Query 010496
Match_columns 509
No_of_seqs 566 out of 3250
Neff 11.2
Searched_HMMs 46136
Date Fri Mar 29 01:12:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03081 pentatricopeptide (PP 100.0 2.8E-70 6E-75 558.7 56.6 463 40-505 82-615 (697)
2 PLN03077 Protein ECB2; Provisi 100.0 3.3E-68 7.1E-73 556.2 53.8 462 38-504 246-777 (857)
3 PLN03218 maturation of RBCL 1; 100.0 8.2E-59 1.8E-63 476.8 43.2 459 37-503 362-850 (1060)
4 PLN03077 Protein ECB2; Provisi 100.0 1.6E-58 3.5E-63 483.3 41.9 443 39-503 146-660 (857)
5 PLN03218 maturation of RBCL 1; 100.0 2E-57 4.3E-62 466.6 48.9 376 43-426 404-797 (1060)
6 PLN03081 pentatricopeptide (PP 100.0 3.1E-52 6.6E-57 426.0 43.1 407 76-502 83-496 (697)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 2.1E-26 4.5E-31 246.5 46.5 397 41-449 461-868 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 3E-26 6.5E-31 245.2 47.1 391 45-447 431-832 (899)
9 KOG4626 O-linked N-acetylgluco 99.9 1.7E-23 3.6E-28 192.3 30.1 388 35-436 106-508 (966)
10 KOG4626 O-linked N-acetylgluco 99.9 1.5E-22 3.2E-27 186.2 29.5 415 22-448 26-486 (966)
11 TIGR00990 3a0801s09 mitochondr 99.9 1.2E-20 2.7E-25 190.8 43.7 392 47-448 129-572 (615)
12 PRK11447 cellulose synthase su 99.9 8.1E-20 1.8E-24 196.8 47.1 392 44-451 302-745 (1157)
13 PRK11788 tetratricopeptide rep 99.9 4.1E-21 8.8E-26 184.7 31.2 291 161-455 47-355 (389)
14 PRK11447 cellulose synthase su 99.9 2.8E-19 6E-24 192.7 46.9 389 47-446 114-665 (1157)
15 PRK11788 tetratricopeptide rep 99.9 7.1E-20 1.5E-24 176.1 31.1 287 124-414 41-348 (389)
16 PRK15174 Vi polysaccharide exp 99.9 1.9E-18 4.2E-23 174.3 39.3 326 83-417 45-385 (656)
17 PRK15174 Vi polysaccharide exp 99.9 3.6E-18 7.8E-23 172.3 39.5 326 47-383 44-384 (656)
18 PRK10049 pgaA outer membrane p 99.9 5.6E-18 1.2E-22 174.6 41.6 391 48-447 18-456 (765)
19 PRK10049 pgaA outer membrane p 99.8 5.1E-17 1.1E-21 167.5 38.8 368 43-420 47-463 (765)
20 PRK09782 bacteriophage N4 rece 99.8 4.8E-16 1E-20 160.7 44.0 393 40-448 176-707 (987)
21 PRK09782 bacteriophage N4 rece 99.8 6.6E-16 1.4E-20 159.7 44.6 195 249-448 476-673 (987)
22 TIGR00990 3a0801s09 mitochondr 99.8 3E-16 6.5E-21 159.0 40.8 368 40-417 155-575 (615)
23 PRK14574 hmsH outer membrane p 99.8 1.2E-15 2.5E-20 154.7 43.9 394 47-447 36-513 (822)
24 PRK14574 hmsH outer membrane p 99.8 5.3E-15 1.1E-19 150.0 40.7 347 96-447 48-479 (822)
25 KOG2002 TPR-containing nuclear 99.7 7.2E-15 1.6E-19 143.0 31.9 402 40-448 265-746 (1018)
26 KOG2002 TPR-containing nuclear 99.7 9E-15 2E-19 142.4 30.9 400 43-449 231-711 (1018)
27 KOG4422 Uncharacterized conser 99.7 1.4E-12 3E-17 116.0 38.8 406 44-451 115-594 (625)
28 KOG2003 TPR repeat-containing 99.7 1.9E-13 4.1E-18 122.3 31.4 205 225-433 500-709 (840)
29 KOG0547 Translocase of outer m 99.7 1.8E-13 4E-18 123.6 31.2 384 48-446 118-565 (606)
30 PF13429 TPR_15: Tetratricopep 99.7 1.2E-16 2.6E-21 145.6 10.2 258 185-446 13-276 (280)
31 KOG2076 RNA polymerase III tra 99.7 3.4E-13 7.5E-18 130.7 33.4 318 125-445 146-510 (895)
32 KOG1155 Anaphase-promoting com 99.7 1E-12 2.2E-17 118.1 32.3 325 118-446 164-494 (559)
33 KOG2003 TPR repeat-containing 99.7 1.7E-13 3.6E-18 122.6 26.7 393 49-447 205-689 (840)
34 KOG0495 HAT repeat protein [RN 99.6 1.1E-11 2.5E-16 116.0 37.6 414 40-465 435-896 (913)
35 PRK10747 putative protoheme IX 99.6 8.4E-13 1.8E-17 125.9 31.0 275 162-446 97-389 (398)
36 KOG1126 DNA-binding cell divis 99.6 4.2E-14 9E-19 132.8 21.1 275 164-448 334-621 (638)
37 PRK10747 putative protoheme IX 99.6 2.1E-12 4.5E-17 123.2 32.7 277 131-414 97-391 (398)
38 KOG4422 Uncharacterized conser 99.6 4.3E-12 9.2E-17 113.0 31.4 358 36-416 198-593 (625)
39 KOG1126 DNA-binding cell divis 99.6 1.2E-13 2.5E-18 129.8 22.9 275 133-417 334-624 (638)
40 TIGR00540 hemY_coli hemY prote 99.6 5.5E-12 1.2E-16 121.0 33.9 115 130-245 96-217 (409)
41 TIGR00540 hemY_coli hemY prote 99.6 4.4E-12 9.6E-17 121.7 30.9 281 159-446 94-398 (409)
42 PF13429 TPR_15: Tetratricopep 99.6 1.5E-14 3.3E-19 131.8 13.3 223 118-343 44-275 (280)
43 KOG1173 Anaphase-promoting com 99.6 6.2E-11 1.3E-15 109.5 34.1 262 179-446 243-517 (611)
44 KOG2076 RNA polymerase III tra 99.6 3.7E-11 8E-16 116.9 33.8 360 45-412 139-554 (895)
45 COG2956 Predicted N-acetylgluc 99.5 7.6E-12 1.7E-16 107.5 24.5 232 222-457 114-357 (389)
46 COG2956 Predicted N-acetylgluc 99.5 1.1E-11 2.5E-16 106.5 25.4 280 131-414 48-348 (389)
47 KOG0495 HAT repeat protein [RN 99.5 5.7E-10 1.2E-14 104.9 38.6 344 54-412 385-781 (913)
48 KOG1155 Anaphase-promoting com 99.5 1.2E-10 2.6E-15 105.1 31.2 358 40-415 159-538 (559)
49 COG3071 HemY Uncharacterized e 99.5 1.5E-10 3.2E-15 102.9 30.0 278 162-447 97-390 (400)
50 COG3071 HemY Uncharacterized e 99.5 2.4E-10 5.1E-15 101.6 31.0 276 131-413 97-390 (400)
51 KOG1915 Cell cycle control pro 99.5 1.2E-09 2.6E-14 99.0 35.8 399 40-447 68-536 (677)
52 KOG1915 Cell cycle control pro 99.5 2E-09 4.4E-14 97.5 36.7 362 79-449 72-502 (677)
53 TIGR02521 type_IV_pilW type IV 99.4 8.7E-11 1.9E-15 104.2 24.2 197 250-447 31-232 (234)
54 KOG1174 Anaphase-promoting com 99.4 6.2E-10 1.4E-14 99.1 27.6 266 148-419 231-506 (564)
55 KOG4318 Bicoid mRNA stability 99.4 1E-11 2.2E-16 120.2 17.7 267 201-507 11-278 (1088)
56 PRK12370 invasion protein regu 99.4 2.2E-10 4.7E-15 114.3 27.7 261 179-449 255-537 (553)
57 KOG1840 Kinesin light chain [C 99.4 1.7E-10 3.7E-15 109.8 25.2 231 216-446 200-478 (508)
58 KOG1129 TPR repeat-containing 99.4 4.7E-11 1E-15 102.9 18.2 223 220-447 228-458 (478)
59 KOG1174 Anaphase-promoting com 99.4 8.7E-09 1.9E-13 91.9 31.6 229 212-446 229-499 (564)
60 KOG4318 Bicoid mRNA stability 99.4 4.1E-10 9E-15 109.3 24.7 271 30-331 10-286 (1088)
61 TIGR02521 type_IV_pilW type IV 99.4 6.2E-10 1.3E-14 98.8 24.7 192 180-376 31-227 (234)
62 PF13041 PPR_2: PPR repeat fam 99.4 1.4E-12 3E-17 83.5 5.3 50 43-92 1-50 (50)
63 KOG1129 TPR repeat-containing 99.4 1.2E-10 2.5E-15 100.5 18.2 230 182-416 225-461 (478)
64 KOG4162 Predicted calmodulin-b 99.3 2.6E-09 5.6E-14 102.6 28.5 128 319-448 653-784 (799)
65 PRK12370 invasion protein regu 99.3 6.4E-10 1.4E-14 111.0 24.3 257 148-415 255-537 (553)
66 KOG0547 Translocase of outer m 99.3 1.6E-09 3.4E-14 98.7 23.9 290 152-448 118-492 (606)
67 KOG2376 Signal recognition par 99.3 6.9E-08 1.5E-12 90.3 32.2 382 51-444 18-517 (652)
68 KOG2047 mRNA splicing factor [ 99.3 1.3E-07 2.9E-12 89.3 34.2 391 45-447 102-687 (835)
69 KOG2047 mRNA splicing factor [ 99.3 2E-07 4.3E-12 88.1 35.1 381 47-435 250-711 (835)
70 PF13041 PPR_2: PPR repeat fam 99.2 4E-11 8.7E-16 76.7 6.8 50 279-328 1-50 (50)
71 KOG1173 Anaphase-promoting com 99.2 7.4E-09 1.6E-13 96.1 23.9 275 118-397 244-535 (611)
72 KOG4340 Uncharacterized conser 99.2 9E-08 1.9E-12 82.0 28.5 387 47-447 12-443 (459)
73 PRK11189 lipoprotein NlpI; Pro 99.2 1.4E-08 3.1E-13 92.8 25.4 226 194-427 40-280 (296)
74 PF12569 NARP1: NMDA receptor- 99.2 6.3E-08 1.4E-12 93.6 30.4 283 158-446 13-333 (517)
75 KOG1840 Kinesin light chain [C 99.2 1.3E-08 2.8E-13 97.2 25.3 237 152-412 202-478 (508)
76 KOG1156 N-terminal acetyltrans 99.2 6.1E-07 1.3E-11 85.1 35.6 393 40-445 70-509 (700)
77 KOG1156 N-terminal acetyltrans 99.2 2.7E-07 5.8E-12 87.4 33.2 344 96-449 55-470 (700)
78 PRK11189 lipoprotein NlpI; Pro 99.2 4.4E-09 9.5E-14 96.1 21.0 212 228-448 39-266 (296)
79 PF12569 NARP1: NMDA receptor- 99.2 3.2E-08 6.9E-13 95.7 26.4 260 187-451 11-295 (517)
80 KOG1125 TPR repeat-containing 99.2 4.1E-09 8.8E-14 98.2 19.2 249 224-494 294-558 (579)
81 KOG3785 Uncharacterized conser 99.2 4.7E-07 1E-11 79.6 30.5 386 52-448 29-491 (557)
82 KOG0624 dsRNA-activated protei 99.2 1.7E-07 3.7E-12 81.9 27.7 301 114-419 34-376 (504)
83 KOG4162 Predicted calmodulin-b 99.1 4.3E-06 9.3E-11 81.1 39.0 331 117-448 322-750 (799)
84 KOG0548 Molecular co-chaperone 99.1 8.6E-07 1.9E-11 82.4 32.7 372 53-446 10-454 (539)
85 COG3063 PilF Tfp pilus assembl 99.1 5.4E-08 1.2E-12 80.5 22.3 191 182-377 37-232 (250)
86 cd05804 StaR_like StaR_like; a 99.1 2.3E-07 5E-12 88.1 30.0 191 114-308 2-213 (355)
87 KOG3785 Uncharacterized conser 99.1 4.2E-07 9.2E-12 79.8 28.1 342 96-444 36-454 (557)
88 COG3063 PilF Tfp pilus assembl 99.1 1.2E-07 2.7E-12 78.4 22.6 199 217-418 37-241 (250)
89 KOG2376 Signal recognition par 99.1 2.2E-06 4.9E-11 80.5 33.4 350 90-448 22-488 (652)
90 PF04733 Coatomer_E: Coatomer 99.1 4.9E-09 1.1E-13 94.3 14.7 145 292-446 113-264 (290)
91 cd05804 StaR_like StaR_like; a 99.0 1.2E-06 2.5E-11 83.3 31.0 297 149-448 6-337 (355)
92 KOG4340 Uncharacterized conser 99.0 9.9E-08 2.1E-12 81.7 20.3 82 361-443 250-335 (459)
93 KOG0548 Molecular co-chaperone 99.0 1.3E-06 2.9E-11 81.2 27.6 339 96-447 16-421 (539)
94 PF04733 Coatomer_E: Coatomer 98.9 9.5E-08 2.1E-12 86.1 18.2 248 159-418 11-270 (290)
95 KOG0624 dsRNA-activated protei 98.9 2E-06 4.3E-11 75.4 25.1 282 96-384 52-374 (504)
96 KOG1125 TPR repeat-containing 98.9 1.3E-07 2.9E-12 88.3 19.0 249 187-440 292-564 (579)
97 KOG3616 Selective LIM binding 98.9 1.3E-06 2.8E-11 84.0 25.4 259 122-408 619-906 (1636)
98 KOG3617 WD40 and TPR repeat-co 98.9 2.8E-06 6.1E-11 82.7 27.8 366 79-495 725-1159(1416)
99 PRK04841 transcriptional regul 98.8 1.3E-05 2.8E-10 86.4 33.3 322 127-448 383-761 (903)
100 KOG3617 WD40 and TPR repeat-co 98.8 2.4E-05 5.2E-10 76.6 30.8 23 420-442 1147-1169(1416)
101 KOG0985 Vesicle coat protein c 98.8 1.1E-05 2.4E-10 80.5 28.8 355 48-443 841-1245(1666)
102 KOG1070 rRNA processing protei 98.8 1E-06 2.2E-11 90.4 21.4 202 247-452 1455-1668(1710)
103 KOG3616 Selective LIM binding 98.8 1.7E-05 3.7E-10 76.6 28.3 347 52-442 739-1129(1636)
104 TIGR03302 OM_YfiO outer membra 98.8 8.9E-07 1.9E-11 78.5 19.0 184 247-447 30-232 (235)
105 PRK14720 transcript cleavage f 98.8 4.1E-06 8.9E-11 85.3 25.4 246 104-395 17-268 (906)
106 PLN02789 farnesyltranstransfer 98.8 3.8E-06 8.3E-11 76.8 22.6 227 182-444 39-299 (320)
107 KOG1128 Uncharacterized conser 98.7 3.9E-06 8.5E-11 80.9 22.5 201 246-466 394-596 (777)
108 PRK10370 formate-dependent nit 98.7 1.6E-06 3.4E-11 73.9 17.8 146 289-448 24-174 (198)
109 KOG0985 Vesicle coat protein c 98.7 0.0001 2.2E-09 74.0 31.2 359 33-438 974-1374(1666)
110 PF12854 PPR_1: PPR repeat 98.7 1.9E-08 4.1E-13 57.6 3.4 34 39-72 1-34 (34)
111 KOG1127 TPR repeat-containing 98.7 4.2E-06 9.1E-11 83.3 21.4 371 61-443 474-909 (1238)
112 KOG1070 rRNA processing protei 98.7 8.1E-06 1.8E-10 84.1 23.8 220 115-336 1455-1691(1710)
113 PRK04841 transcriptional regul 98.7 0.00027 5.9E-09 76.2 37.0 323 125-447 348-720 (903)
114 PLN02789 farnesyltranstransfer 98.7 5.4E-05 1.2E-09 69.3 26.4 209 151-364 39-267 (320)
115 PRK15179 Vi polysaccharide bio 98.6 4.5E-06 9.7E-11 84.2 20.9 208 279-499 84-315 (694)
116 KOG1128 Uncharacterized conser 98.6 2.8E-06 6.1E-11 81.9 17.9 233 118-364 398-635 (777)
117 PRK15359 type III secretion sy 98.6 2.5E-06 5.5E-11 68.6 15.3 121 302-428 14-136 (144)
118 PRK15359 type III secretion sy 98.6 1.2E-06 2.5E-11 70.5 13.3 108 336-448 13-122 (144)
119 KOG1914 mRNA cleavage and poly 98.6 0.0004 8.7E-09 65.2 30.1 78 77-159 17-96 (656)
120 TIGR03302 OM_YfiO outer membra 98.6 8.6E-06 1.9E-10 72.2 19.2 180 214-415 32-234 (235)
121 KOG3081 Vesicle coat complex C 98.6 7.5E-05 1.6E-09 63.6 22.6 118 254-378 112-233 (299)
122 PRK10370 formate-dependent nit 98.6 1.7E-05 3.7E-10 67.5 19.2 155 256-421 22-181 (198)
123 COG5010 TadD Flp pilus assembl 98.6 1.6E-05 3.5E-10 67.6 18.4 155 285-442 70-226 (257)
124 KOG3081 Vesicle coat complex C 98.5 3.7E-05 8.1E-10 65.4 20.1 245 187-447 15-271 (299)
125 COG5010 TadD Flp pilus assembl 98.5 2.8E-05 6E-10 66.2 19.1 157 114-273 63-225 (257)
126 COG4783 Putative Zn-dependent 98.5 6.9E-05 1.5E-09 69.5 22.9 135 159-310 316-454 (484)
127 PRK14720 transcript cleavage f 98.5 3.7E-05 8E-10 78.6 23.1 151 249-429 115-268 (906)
128 PF12854 PPR_1: PPR repeat 98.5 2.6E-07 5.6E-12 52.9 4.5 32 245-276 2-33 (34)
129 KOG2053 Mitochondrial inherita 98.5 0.002 4.3E-08 64.4 35.1 390 54-453 18-508 (932)
130 PRK15363 pathogenicity island 98.5 5.2E-06 1.1E-10 65.7 12.8 119 352-493 35-155 (157)
131 KOG1127 TPR repeat-containing 98.5 6.3E-05 1.4E-09 75.3 22.7 393 47-446 494-951 (1238)
132 KOG3060 Uncharacterized conser 98.4 0.00016 3.4E-09 61.2 21.0 167 253-422 55-229 (289)
133 COG4783 Putative Zn-dependent 98.4 0.00023 4.9E-09 66.2 23.5 118 326-445 316-435 (484)
134 TIGR02552 LcrH_SycD type III s 98.4 7.7E-06 1.7E-10 65.4 12.1 96 352-447 17-114 (135)
135 KOG1914 mRNA cleavage and poly 98.3 0.003 6.6E-08 59.6 35.1 388 39-437 14-529 (656)
136 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2.4E-05 5.2E-10 73.1 15.4 124 152-277 172-295 (395)
137 TIGR00756 PPR pentatricopeptid 98.3 1.2E-06 2.7E-11 51.0 4.5 35 46-80 1-35 (35)
138 PF07079 DUF1347: Protein of u 98.3 0.003 6.4E-08 58.3 31.3 376 55-444 16-521 (549)
139 PF13812 PPR_3: Pentatricopept 98.3 1.3E-06 2.8E-11 50.5 4.1 34 45-78 1-34 (34)
140 PRK15179 Vi polysaccharide bio 98.3 0.00018 3.8E-09 72.9 21.4 229 118-365 28-268 (694)
141 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 6.3E-05 1.4E-09 70.4 16.5 127 252-382 171-298 (395)
142 COG5107 RNA14 Pre-mRNA 3'-end 98.2 0.005 1.1E-07 56.8 28.2 130 283-416 399-534 (660)
143 KOG3060 Uncharacterized conser 98.2 0.00032 6.9E-09 59.5 17.6 163 283-449 54-222 (289)
144 TIGR02552 LcrH_SycD type III s 98.2 9.1E-05 2E-09 59.1 14.1 113 303-419 5-120 (135)
145 PF09976 TPR_21: Tetratricopep 98.1 0.00026 5.5E-09 57.2 16.1 123 182-306 14-143 (145)
146 PF09976 TPR_21: Tetratricopep 98.1 0.00013 2.7E-09 59.0 14.0 114 329-443 24-143 (145)
147 KOG0550 Molecular chaperone (D 98.0 0.00026 5.5E-09 64.2 15.2 154 289-448 177-351 (486)
148 cd00189 TPR Tetratricopeptide 98.0 6.7E-05 1.4E-09 55.3 10.4 93 355-447 3-97 (100)
149 TIGR02795 tol_pal_ybgF tol-pal 98.0 9E-05 2E-09 57.6 11.1 93 355-447 5-105 (119)
150 TIGR00756 PPR pentatricopeptid 98.0 1E-05 2.3E-10 46.9 4.4 33 182-214 2-34 (35)
151 PF13812 PPR_3: Pentatricopept 98.0 1.2E-05 2.6E-10 46.4 4.3 33 181-213 2-34 (34)
152 PF13414 TPR_11: TPR repeat; P 98.0 2.1E-05 4.6E-10 54.2 6.1 65 383-447 2-67 (69)
153 PLN03088 SGT1, suppressor of 98.0 0.00016 3.4E-09 68.0 13.8 99 324-424 10-110 (356)
154 TIGR02795 tol_pal_ybgF tol-pal 98.0 0.00023 5E-09 55.2 12.4 105 318-422 4-114 (119)
155 PF12895 Apc3: Anaphase-promot 98.0 5.8E-06 1.3E-10 59.6 2.9 55 388-443 29-83 (84)
156 PF01535 PPR: PPR repeat; Int 98.0 1.2E-05 2.7E-10 45.1 3.7 31 46-76 1-31 (31)
157 KOG0553 TPR repeat-containing 97.9 6.3E-05 1.4E-09 65.4 9.3 97 325-424 90-189 (304)
158 KOG2053 Mitochondrial inherita 97.9 0.01 2.3E-07 59.5 25.4 104 161-267 21-127 (932)
159 PF13432 TPR_16: Tetratricopep 97.9 3.3E-05 7.2E-10 52.4 5.7 58 390-447 3-60 (65)
160 PRK02603 photosystem I assembl 97.9 0.00024 5.1E-09 59.4 11.3 82 352-433 35-121 (172)
161 KOG0553 TPR repeat-containing 97.8 0.00021 4.6E-09 62.2 10.8 100 289-392 89-190 (304)
162 PRK02603 photosystem I assembl 97.8 0.00089 1.9E-08 55.9 14.0 92 179-271 34-127 (172)
163 PF04840 Vps16_C: Vps16, C-ter 97.8 0.027 5.9E-07 51.7 25.2 112 316-444 177-288 (319)
164 PF12895 Apc3: Anaphase-promot 97.8 8.2E-05 1.8E-09 53.6 6.6 47 295-341 3-50 (84)
165 cd00189 TPR Tetratricopeptide 97.8 0.00038 8.1E-09 51.2 10.6 92 183-276 3-94 (100)
166 PLN03088 SGT1, suppressor of 97.8 0.00054 1.2E-08 64.4 13.7 102 287-391 8-110 (356)
167 PRK15363 pathogenicity island 97.8 0.00077 1.7E-08 53.6 12.3 104 171-276 25-129 (157)
168 CHL00033 ycf3 photosystem I as 97.8 0.00038 8.2E-09 57.9 10.9 95 351-445 34-140 (168)
169 KOG2280 Vacuolar assembly/sort 97.7 0.025 5.4E-07 55.8 23.9 305 123-443 442-795 (829)
170 PF04840 Vps16_C: Vps16, C-ter 97.7 0.036 7.8E-07 50.9 30.4 284 46-379 1-289 (319)
171 KOG1130 Predicted G-alpha GTPa 97.7 0.00042 9.1E-09 62.8 11.0 130 317-446 196-343 (639)
172 PF14938 SNAP: Soluble NSF att 97.7 0.0027 5.9E-08 57.8 16.6 123 322-444 120-263 (282)
173 PRK15331 chaperone protein Sic 97.7 0.002 4.4E-08 51.5 13.5 89 358-446 43-133 (165)
174 PRK10153 DNA-binding transcrip 97.7 0.0027 5.9E-08 62.4 17.5 61 385-446 421-481 (517)
175 PF06239 ECSIT: Evolutionarily 97.7 0.00041 9E-09 57.7 9.9 94 39-133 41-153 (228)
176 PF14559 TPR_19: Tetratricopep 97.7 5.6E-05 1.2E-09 51.9 4.0 53 395-447 2-54 (68)
177 PF12688 TPR_5: Tetratrico pep 97.7 0.0024 5.2E-08 48.9 12.8 106 185-291 6-116 (120)
178 PF14938 SNAP: Soluble NSF att 97.6 0.0081 1.7E-07 54.7 18.7 158 184-343 39-223 (282)
179 KOG0550 Molecular chaperone (D 97.6 0.032 6.9E-07 51.2 21.5 85 291-378 259-347 (486)
180 PRK10866 outer membrane biogen 97.6 0.041 8.9E-07 48.6 22.7 65 179-245 31-99 (243)
181 CHL00033 ycf3 photosystem I as 97.6 0.0023 4.9E-08 53.2 13.6 81 180-261 35-117 (168)
182 PF01535 PPR: PPR repeat; Int 97.6 8.9E-05 1.9E-09 41.5 3.6 29 283-311 2-30 (31)
183 PF13371 TPR_9: Tetratricopept 97.6 0.00024 5.3E-09 49.5 6.6 58 391-448 2-59 (73)
184 PF05843 Suf: Suppressor of fo 97.6 0.0026 5.7E-08 57.6 14.8 133 282-417 2-140 (280)
185 PRK10866 outer membrane biogen 97.6 0.013 2.8E-07 51.7 18.5 175 255-446 37-240 (243)
186 COG4235 Cytochrome c biogenesi 97.6 0.0055 1.2E-07 54.0 15.7 101 349-449 153-258 (287)
187 PF10037 MRP-S27: Mitochondria 97.6 0.001 2.2E-08 62.7 12.0 116 148-263 65-186 (429)
188 PF10037 MRP-S27: Mitochondria 97.6 0.0014 3.1E-08 61.7 12.5 97 247-343 63-165 (429)
189 PRK10153 DNA-binding transcrip 97.6 0.0075 1.6E-07 59.4 18.1 129 212-343 334-480 (517)
190 PF08579 RPM2: Mitochondrial r 97.5 0.0018 3.8E-08 47.8 10.2 81 182-262 27-116 (120)
191 PF13432 TPR_16: Tetratricopep 97.5 0.00047 1E-08 46.7 6.6 61 358-418 3-65 (65)
192 COG4700 Uncharacterized protei 97.5 0.016 3.5E-07 46.9 15.8 133 312-446 85-221 (251)
193 PF05843 Suf: Suppressor of fo 97.4 0.0071 1.5E-07 54.8 14.8 127 182-310 3-136 (280)
194 PF08579 RPM2: Mitochondrial r 97.4 0.003 6.5E-08 46.6 9.7 79 285-364 29-116 (120)
195 PRK10803 tol-pal system protei 97.4 0.0019 4.1E-08 57.5 10.5 93 355-447 146-246 (263)
196 COG4700 Uncharacterized protei 97.3 0.059 1.3E-06 43.8 17.3 124 212-337 86-214 (251)
197 KOG2796 Uncharacterized conser 97.3 0.015 3.3E-07 49.9 14.7 127 184-310 181-315 (366)
198 PF13414 TPR_11: TPR repeat; P 97.3 0.00084 1.8E-08 46.1 5.9 64 352-415 3-69 (69)
199 PF13281 DUF4071: Domain of un 97.3 0.067 1.5E-06 49.7 19.6 161 254-417 145-338 (374)
200 KOG1538 Uncharacterized conser 97.3 0.028 6E-07 54.5 17.4 72 263-343 729-800 (1081)
201 COG3898 Uncharacterized membra 97.3 0.14 3.1E-06 46.8 26.7 287 83-378 85-389 (531)
202 PF06239 ECSIT: Evolutionarily 97.3 0.0042 9.1E-08 51.9 10.4 97 169-265 34-153 (228)
203 PF12688 TPR_5: Tetratrico pep 97.2 0.0087 1.9E-07 45.9 11.1 54 389-442 43-99 (120)
204 KOG2041 WD40 repeat protein [G 97.2 0.26 5.7E-06 48.5 26.0 70 131-205 747-821 (1189)
205 KOG1130 Predicted G-alpha GTPa 97.2 0.0014 3E-08 59.6 7.6 260 47-309 17-343 (639)
206 KOG2280 Vacuolar assembly/sort 97.2 0.31 6.7E-06 48.5 26.7 109 283-408 686-794 (829)
207 PF14559 TPR_19: Tetratricopep 97.1 0.003 6.6E-08 43.1 7.3 50 227-277 3-52 (68)
208 PLN03098 LPA1 LOW PSII ACCUMUL 97.1 0.003 6.5E-08 59.1 8.9 64 384-447 75-141 (453)
209 KOG2796 Uncharacterized conser 97.0 0.087 1.9E-06 45.4 16.3 135 282-417 178-319 (366)
210 PF13431 TPR_17: Tetratricopep 97.0 0.00046 1E-08 39.3 2.1 34 406-439 1-34 (34)
211 PRK10803 tol-pal system protei 97.0 0.018 3.8E-07 51.3 12.5 102 317-418 144-251 (263)
212 PF13525 YfiO: Outer membrane 97.0 0.2 4.3E-06 43.0 20.0 181 181-371 6-197 (203)
213 PF13371 TPR_9: Tetratricopept 96.9 0.0034 7.5E-08 43.6 6.4 61 360-420 3-65 (73)
214 KOG1258 mRNA processing protei 96.9 0.46 9.9E-06 46.3 28.1 382 41-433 41-490 (577)
215 PF13424 TPR_12: Tetratricopep 96.9 0.0037 8E-08 44.1 6.2 62 385-446 6-74 (78)
216 KOG2041 WD40 repeat protein [G 96.9 0.35 7.5E-06 47.8 20.8 248 165-447 679-952 (1189)
217 KOG1538 Uncharacterized conser 96.9 0.1 2.2E-06 50.8 17.0 179 184-384 602-806 (1081)
218 PF13428 TPR_14: Tetratricopep 96.9 0.002 4.4E-08 39.4 4.1 42 385-426 2-43 (44)
219 PF13525 YfiO: Outer membrane 96.9 0.031 6.7E-07 48.0 12.9 49 390-438 147-198 (203)
220 KOG0543 FKBP-type peptidyl-pro 96.8 0.015 3.3E-07 53.3 10.4 62 386-447 259-320 (397)
221 PF09205 DUF1955: Domain of un 96.7 0.057 1.2E-06 41.2 11.4 140 292-450 13-152 (161)
222 PF03704 BTAD: Bacterial trans 96.7 0.009 2E-07 48.3 7.8 69 385-453 63-136 (146)
223 COG4235 Cytochrome c biogenesi 96.6 0.11 2.3E-06 46.1 13.8 96 247-343 153-254 (287)
224 KOG0543 FKBP-type peptidyl-pro 96.6 0.044 9.6E-07 50.4 11.8 96 352-447 257-355 (397)
225 PF07079 DUF1347: Protein of u 96.5 0.71 1.5E-05 43.4 29.6 115 293-410 391-521 (549)
226 PF13512 TPR_18: Tetratricopep 96.5 0.098 2.1E-06 41.0 11.8 88 360-447 18-128 (142)
227 PF13424 TPR_12: Tetratricopep 96.4 0.0061 1.3E-07 42.9 4.7 60 353-412 6-74 (78)
228 PF12921 ATP13: Mitochondrial 96.4 0.061 1.3E-06 41.7 10.4 53 311-363 47-99 (126)
229 KOG2610 Uncharacterized conser 96.4 0.11 2.4E-06 46.4 12.9 149 294-445 116-274 (491)
230 KOG3941 Intermediate in Toll s 96.4 0.04 8.6E-07 47.9 9.9 106 39-145 61-186 (406)
231 COG3898 Uncharacterized membra 96.3 0.84 1.8E-05 42.0 28.6 286 119-413 83-392 (531)
232 PRK11619 lytic murein transgly 96.3 1.5 3.3E-05 44.8 33.1 95 133-229 81-177 (644)
233 KOG1585 Protein required for f 96.3 0.62 1.3E-05 40.0 16.5 50 390-440 196-249 (308)
234 PRK15331 chaperone protein Sic 96.3 0.068 1.5E-06 43.0 10.1 87 188-276 45-131 (165)
235 KOG0890 Protein kinase of the 96.2 2.2 4.8E-05 48.7 23.8 318 123-450 1388-1734(2382)
236 PF03704 BTAD: Bacterial trans 96.1 0.078 1.7E-06 42.7 10.3 71 182-253 64-139 (146)
237 KOG1920 IkappaB kinase complex 96.1 1.2 2.7E-05 47.0 20.5 151 163-341 894-1051(1265)
238 KOG1920 IkappaB kinase complex 96.1 2.4 5.2E-05 45.0 24.4 52 359-410 972-1025(1265)
239 PLN03098 LPA1 LOW PSII ACCUMUL 96.1 0.057 1.2E-06 50.9 10.0 63 351-413 74-141 (453)
240 PF10300 DUF3808: Protein of u 96.1 1.7 3.6E-05 42.8 22.4 156 121-277 191-374 (468)
241 PF13281 DUF4071: Domain of un 96.0 1.4 3E-05 41.2 19.8 79 183-261 144-228 (374)
242 PF04184 ST7: ST7 protein; In 96.0 0.91 2E-05 43.4 17.3 100 317-416 260-378 (539)
243 COG5107 RNA14 Pre-mRNA 3'-end 96.0 1.5 3.2E-05 41.3 30.1 372 66-445 30-529 (660)
244 PF12921 ATP13: Mitochondrial 95.9 0.14 3E-06 39.8 10.1 80 180-259 2-97 (126)
245 COG3118 Thioredoxin domain-con 95.9 1.2 2.6E-05 39.6 17.4 146 290-437 143-291 (304)
246 COG0457 NrfG FOG: TPR repeat [ 95.8 1.2 2.5E-05 38.8 27.5 194 252-447 61-265 (291)
247 KOG1941 Acetylcholine receptor 95.7 0.19 4.1E-06 45.5 11.3 223 190-412 16-274 (518)
248 KOG4555 TPR repeat-containing 95.7 0.16 3.4E-06 38.8 9.1 89 361-449 52-146 (175)
249 PF08631 SPO22: Meiosis protei 95.7 1.6 3.4E-05 39.6 24.2 60 217-277 86-148 (278)
250 PRK11906 transcriptional regul 95.7 0.29 6.2E-06 46.4 12.9 142 297-441 274-430 (458)
251 PF02259 FAT: FAT domain; Int 95.7 2 4.3E-05 40.6 20.9 149 280-431 145-305 (352)
252 PF13512 TPR_18: Tetratricopep 95.6 0.54 1.2E-05 37.0 12.3 19 400-418 115-133 (142)
253 PF04053 Coatomer_WDAD: Coatom 95.6 0.73 1.6E-05 44.6 15.8 134 118-276 295-428 (443)
254 PF10300 DUF3808: Protein of u 95.6 1.2 2.6E-05 43.7 17.6 160 284-446 191-375 (468)
255 COG1729 Uncharacterized protei 95.4 0.23 5.1E-06 43.4 10.7 100 318-418 144-249 (262)
256 PF04053 Coatomer_WDAD: Coatom 95.3 0.49 1.1E-05 45.8 13.7 158 189-379 270-429 (443)
257 PF09205 DUF1955: Domain of un 95.3 0.53 1.1E-05 36.1 10.7 61 184-245 90-150 (161)
258 COG1729 Uncharacterized protei 95.2 0.25 5.4E-06 43.3 10.2 94 353-447 143-244 (262)
259 COG0457 NrfG FOG: TPR repeat [ 95.2 1.9 4E-05 37.4 26.8 221 194-416 37-268 (291)
260 KOG1585 Protein required for f 95.2 1.8 4E-05 37.2 15.3 27 119-145 32-58 (308)
261 PF04184 ST7: ST7 protein; In 95.0 2.9 6.3E-05 40.1 17.1 160 185-359 173-338 (539)
262 COG3118 Thioredoxin domain-con 95.0 2.5 5.5E-05 37.6 18.2 116 224-343 143-263 (304)
263 COG3629 DnrI DNA-binding trans 94.9 0.17 3.6E-06 45.0 8.5 62 385-446 154-215 (280)
264 KOG4234 TPR repeat-containing 94.9 0.19 4E-06 41.6 8.0 88 361-448 104-198 (271)
265 KOG3941 Intermediate in Toll s 94.9 0.31 6.8E-06 42.6 9.6 109 269-378 53-185 (406)
266 KOG2066 Vacuolar assembly/sort 94.7 5.6 0.00012 40.4 25.3 147 51-207 362-532 (846)
267 PF00515 TPR_1: Tetratricopept 94.7 0.077 1.7E-06 30.0 4.1 32 385-416 2-33 (34)
268 COG4105 ComL DNA uptake lipopr 94.7 2.7 5.9E-05 36.7 20.6 58 390-447 173-233 (254)
269 PF07719 TPR_2: Tetratricopept 94.7 0.11 2.4E-06 29.2 4.7 31 386-416 3-33 (34)
270 KOG3364 Membrane protein invol 94.6 0.53 1.1E-05 36.3 9.1 64 383-446 31-99 (149)
271 KOG1941 Acetylcholine receptor 94.5 1.2 2.6E-05 40.6 12.6 220 159-378 16-272 (518)
272 PRK11906 transcriptional regul 94.4 3.8 8.3E-05 39.2 16.4 30 231-261 274-306 (458)
273 smart00299 CLH Clathrin heavy 94.3 2.2 4.8E-05 33.9 15.3 83 220-306 12-94 (140)
274 PF13431 TPR_17: Tetratricopep 94.2 0.085 1.8E-06 29.9 3.4 26 114-139 9-34 (34)
275 COG4105 ComL DNA uptake lipopr 94.2 3.6 7.7E-05 36.0 17.0 56 287-343 173-231 (254)
276 KOG2114 Vacuolar assembly/sort 94.1 6.4 0.00014 40.4 17.9 175 152-343 337-517 (933)
277 KOG1550 Extracellular protein 94.0 7.9 0.00017 39.2 25.4 274 165-448 228-539 (552)
278 KOG2610 Uncharacterized conser 94.0 0.75 1.6E-05 41.4 10.2 117 327-445 114-236 (491)
279 KOG1464 COP9 signalosome, subu 93.9 4 8.7E-05 35.7 19.2 224 183-412 68-331 (440)
280 PF14853 Fis1_TPR_C: Fis1 C-te 93.9 0.43 9.4E-06 30.3 6.4 51 420-496 3-53 (53)
281 PF04097 Nic96: Nup93/Nic96; 93.9 4.9 0.00011 41.2 17.5 49 43-93 110-158 (613)
282 PF13176 TPR_7: Tetratricopept 93.8 0.13 2.8E-06 29.7 3.7 26 420-445 1-26 (36)
283 PF13428 TPR_14: Tetratricopep 93.8 0.19 4.1E-06 30.5 4.7 27 182-208 3-29 (44)
284 PF02259 FAT: FAT domain; Int 93.7 5.9 0.00013 37.4 17.1 67 383-449 145-215 (352)
285 smart00299 CLH Clathrin heavy 93.7 2.9 6.2E-05 33.2 14.7 127 47-191 9-136 (140)
286 COG4649 Uncharacterized protei 93.4 3.7 8E-05 33.4 13.0 119 327-446 69-195 (221)
287 PF07035 Mic1: Colon cancer-as 93.1 4.1 8.9E-05 33.3 13.0 128 107-243 19-148 (167)
288 KOG4555 TPR repeat-containing 93.1 1.8 4E-05 33.2 9.6 53 190-243 53-105 (175)
289 PRK09687 putative lyase; Provi 93.0 6.9 0.00015 35.5 27.3 50 146-195 34-83 (280)
290 KOG2114 Vacuolar assembly/sort 92.6 14 0.00031 38.0 23.5 135 57-206 380-516 (933)
291 COG4785 NlpI Lipoprotein NlpI, 92.6 5.9 0.00013 33.6 13.2 162 281-449 99-268 (297)
292 PF13176 TPR_7: Tetratricopept 92.5 0.3 6.5E-06 28.1 4.0 27 386-412 1-27 (36)
293 PRK09687 putative lyase; Provi 92.5 8.1 0.00017 35.0 28.2 212 118-343 37-261 (280)
294 COG4649 Uncharacterized protei 92.4 3.5 7.6E-05 33.5 10.8 19 393-411 176-194 (221)
295 TIGR02561 HrpB1_HrpK type III 92.3 1.1 2.4E-05 35.3 7.8 69 365-433 23-93 (153)
296 KOG1586 Protein required for f 92.2 6.9 0.00015 33.7 13.5 55 392-446 162-223 (288)
297 PF02284 COX5A: Cytochrome c o 92.2 1.4 3E-05 32.1 7.5 63 297-361 26-88 (108)
298 PF09613 HrpB1_HrpK: Bacterial 92.0 1.3 2.8E-05 35.6 8.2 72 362-433 20-93 (160)
299 PF10602 RPN7: 26S proteasome 92.0 4.6 0.0001 33.6 11.9 60 284-343 39-100 (177)
300 cd00923 Cyt_c_Oxidase_Va Cytoc 91.9 1.7 3.6E-05 31.4 7.6 63 296-360 22-84 (103)
301 COG2976 Uncharacterized protei 91.8 6.9 0.00015 32.7 14.5 127 183-311 57-189 (207)
302 PF13181 TPR_8: Tetratricopept 91.7 0.41 9E-06 26.8 3.9 30 386-415 3-32 (34)
303 PF10602 RPN7: 26S proteasome 91.4 3.8 8.2E-05 34.2 10.7 63 181-243 37-101 (177)
304 KOG2066 Vacuolar assembly/sort 91.4 19 0.00041 36.9 25.5 30 252-281 507-536 (846)
305 PF09613 HrpB1_HrpK: Bacterial 91.2 6.9 0.00015 31.6 12.8 110 326-439 20-130 (160)
306 KOG4648 Uncharacterized conser 91.2 0.43 9.4E-06 42.9 5.2 94 324-420 105-201 (536)
307 COG2976 Uncharacterized protei 91.0 8.2 0.00018 32.2 12.4 84 126-209 97-188 (207)
308 KOG1586 Protein required for f 91.0 9.6 0.00021 32.8 15.5 70 357-426 159-239 (288)
309 KOG1258 mRNA processing protei 90.9 18 0.00038 35.8 27.4 126 79-208 44-179 (577)
310 KOG4234 TPR repeat-containing 90.9 5.4 0.00012 33.4 10.6 102 326-427 105-211 (271)
311 PF07719 TPR_2: Tetratricopept 90.6 0.39 8.5E-06 26.9 3.1 29 419-447 2-30 (34)
312 PF13170 DUF4003: Protein of u 90.6 13 0.00029 33.9 14.7 126 232-360 79-225 (297)
313 COG3629 DnrI DNA-binding trans 90.3 3.6 7.9E-05 36.8 10.1 78 181-259 154-236 (280)
314 PF00515 TPR_1: Tetratricopept 89.6 0.98 2.1E-05 25.3 4.2 28 181-208 2-29 (34)
315 COG3947 Response regulator con 89.6 15 0.00032 32.9 13.9 61 386-446 281-341 (361)
316 KOG4570 Uncharacterized conser 89.1 4.4 9.5E-05 36.4 9.4 100 244-344 58-163 (418)
317 PF07035 Mic1: Colon cancer-as 89.0 11 0.00025 30.8 13.6 137 65-210 14-150 (167)
318 PF07721 TPR_4: Tetratricopept 88.9 0.61 1.3E-05 24.4 2.7 23 420-442 3-25 (26)
319 PF00637 Clathrin: Region in C 88.7 0.49 1.1E-05 37.9 3.4 85 186-277 13-97 (143)
320 COG1747 Uncharacterized N-term 88.6 25 0.00054 34.2 23.2 58 214-274 65-122 (711)
321 KOG4648 Uncharacterized conser 88.5 1.6 3.4E-05 39.5 6.5 93 288-384 104-198 (536)
322 PRK13800 putative oxidoreducta 88.4 42 0.0009 36.5 26.6 254 66-344 624-880 (897)
323 PF13174 TPR_6: Tetratricopept 88.3 1.1 2.5E-05 24.6 3.9 25 422-446 4-28 (33)
324 PRK15180 Vi polysaccharide bio 88.2 9.3 0.0002 36.5 11.5 120 327-448 300-421 (831)
325 TIGR02508 type_III_yscG type I 88.0 8.5 0.00018 28.1 10.0 61 156-219 46-106 (115)
326 PF00637 Clathrin: Region in C 88.0 1.5 3.3E-05 35.0 5.8 84 86-175 13-96 (143)
327 PF13374 TPR_10: Tetratricopep 88.0 1 2.2E-05 26.6 3.7 27 420-446 4-30 (42)
328 PF13174 TPR_6: Tetratricopept 87.9 0.74 1.6E-05 25.4 2.9 26 387-412 3-28 (33)
329 PF13181 TPR_8: Tetratricopept 87.7 1.3 2.8E-05 24.7 3.8 29 419-447 2-30 (34)
330 PF08631 SPO22: Meiosis protei 87.6 22 0.00047 32.3 25.9 18 191-208 4-21 (278)
331 KOG0276 Vesicle coat complex C 87.1 20 0.00043 35.6 13.1 122 162-309 599-720 (794)
332 COG4785 NlpI Lipoprotein NlpI, 87.0 18 0.0004 30.8 17.0 177 231-416 81-269 (297)
333 KOG0276 Vesicle coat complex C 86.6 12 0.00027 36.9 11.5 97 130-243 598-694 (794)
334 PF07721 TPR_4: Tetratricopept 86.4 1.3 2.9E-05 23.1 3.1 22 121-142 4-25 (26)
335 PRK10941 hypothetical protein; 86.2 4.8 0.0001 36.0 8.4 63 386-448 183-245 (269)
336 PF13374 TPR_10: Tetratricopep 86.2 2.2 4.8E-05 25.0 4.5 28 385-412 3-30 (42)
337 PF11207 DUF2989: Protein of u 85.6 9.3 0.0002 32.2 9.1 79 190-270 117-198 (203)
338 KOG4570 Uncharacterized conser 85.5 13 0.00028 33.6 10.2 45 332-377 116-160 (418)
339 TIGR03504 FimV_Cterm FimV C-te 85.4 1.8 3.9E-05 26.2 3.6 27 422-448 3-29 (44)
340 cd00923 Cyt_c_Oxidase_Va Cytoc 85.4 7.2 0.00016 28.3 7.1 45 198-242 25-69 (103)
341 PRK15180 Vi polysaccharide bio 84.5 40 0.00088 32.5 23.3 110 96-208 303-419 (831)
342 PF10345 Cohesin_load: Cohesin 84.3 54 0.0012 33.8 26.1 48 395-442 372-428 (608)
343 COG3947 Response regulator con 83.7 31 0.00067 31.0 11.6 67 252-318 281-355 (361)
344 KOG2471 TPR repeat-containing 83.5 40 0.00086 32.7 13.0 275 48-328 18-381 (696)
345 PF02284 COX5A: Cytochrome c o 83.4 8.3 0.00018 28.3 6.8 47 198-244 28-74 (108)
346 PF07163 Pex26: Pex26 protein; 83.3 17 0.00037 32.3 9.9 87 187-273 90-181 (309)
347 KOG1464 COP9 signalosome, subu 83.0 33 0.00071 30.4 18.8 151 193-343 40-218 (440)
348 KOG0890 Protein kinase of the 82.8 1.1E+02 0.0024 36.3 24.9 140 96-239 1397-1542(2382)
349 smart00028 TPR Tetratricopepti 82.2 3.5 7.6E-05 21.8 4.0 29 387-415 4-32 (34)
350 PF14853 Fis1_TPR_C: Fis1 C-te 81.1 3.1 6.7E-05 26.4 3.6 32 389-420 6-37 (53)
351 PF11207 DUF2989: Protein of u 80.8 20 0.00043 30.3 9.2 73 298-371 123-197 (203)
352 KOG1550 Extracellular protein 80.2 72 0.0016 32.4 16.4 177 231-416 228-429 (552)
353 TIGR03504 FimV_Cterm FimV C-te 79.9 5 0.00011 24.3 4.1 24 287-310 5-28 (44)
354 COG4455 ImpE Protein of avirul 79.6 8.4 0.00018 32.8 6.6 73 355-427 4-81 (273)
355 PF10579 Rapsyn_N: Rapsyn N-te 78.7 4.8 0.0001 27.9 4.1 46 396-441 18-66 (80)
356 COG2909 MalT ATP-dependent tra 78.6 93 0.002 32.8 29.0 219 190-409 425-684 (894)
357 PF09986 DUF2225: Uncharacteri 78.6 15 0.00033 31.6 8.3 64 386-449 120-196 (214)
358 PF06552 TOM20_plant: Plant sp 78.2 16 0.00035 30.1 7.7 66 379-451 63-140 (186)
359 TIGR02561 HrpB1_HrpK type III 78.2 33 0.00072 27.4 11.7 19 260-278 54-72 (153)
360 PF13929 mRNA_stabil: mRNA sta 77.6 54 0.0012 29.6 12.3 110 165-275 144-263 (292)
361 PRK13800 putative oxidoreducta 77.5 1.1E+02 0.0025 33.2 27.9 159 273-445 720-879 (897)
362 PF07163 Pex26: Pex26 protein; 77.5 31 0.00067 30.8 9.6 87 288-377 90-183 (309)
363 smart00028 TPR Tetratricopepti 77.2 4.1 8.9E-05 21.5 3.2 29 419-447 2-30 (34)
364 PF06552 TOM20_plant: Plant sp 77.0 6.6 0.00014 32.3 5.2 46 399-444 50-99 (186)
365 KOG0376 Serine-threonine phosp 77.0 4.4 9.4E-05 38.7 4.8 52 392-443 46-97 (476)
366 KOG4077 Cytochrome c oxidase, 76.0 22 0.00047 27.3 7.2 59 299-359 67-125 (149)
367 KOG4642 Chaperone-dependent E3 75.7 9.8 0.00021 32.9 6.0 84 326-412 20-106 (284)
368 PF04190 DUF410: Protein of un 75.4 61 0.0013 29.0 14.9 145 53-209 18-170 (260)
369 PF10579 Rapsyn_N: Rapsyn N-te 74.9 10 0.00022 26.4 4.8 46 328-373 18-64 (80)
370 PF14561 TPR_20: Tetratricopep 74.9 7.7 0.00017 28.0 4.7 42 406-447 10-51 (90)
371 cd08819 CARD_MDA5_2 Caspase ac 74.7 12 0.00025 26.7 5.2 33 132-165 50-82 (88)
372 PF14432 DYW_deaminase: DYW fa 74.1 4 8.7E-05 31.1 3.2 38 454-503 2-39 (116)
373 COG5187 RPN7 26S proteasome re 74.0 67 0.0015 28.9 11.7 26 352-377 115-140 (412)
374 KOG2063 Vacuolar assembly/sort 73.3 1.4E+02 0.0029 32.1 15.4 220 121-359 507-776 (877)
375 KOG1308 Hsp70-interacting prot 72.7 2.8 6.1E-05 38.1 2.4 88 364-451 126-215 (377)
376 PF09670 Cas_Cas02710: CRISPR- 72.5 92 0.002 29.8 12.6 51 292-343 142-196 (379)
377 COG4455 ImpE Protein of avirul 71.8 65 0.0014 27.7 10.3 78 283-361 3-81 (273)
378 smart00386 HAT HAT (Half-A-TPR 71.7 8.8 0.00019 20.7 3.6 30 398-427 1-30 (33)
379 KOG4279 Serine/threonine prote 71.7 60 0.0013 33.4 11.1 64 179-245 200-273 (1226)
380 cd08819 CARD_MDA5_2 Caspase ac 71.6 34 0.00073 24.4 7.2 38 262-300 48-85 (88)
381 TIGR02508 type_III_yscG type I 71.0 39 0.00084 24.8 9.3 85 231-319 21-105 (115)
382 KOG4507 Uncharacterized conser 70.9 21 0.00046 35.2 7.7 83 365-447 620-705 (886)
383 PRK13184 pknD serine/threonine 70.9 1.6E+02 0.0035 32.0 18.5 272 188-464 483-850 (932)
384 PF12862 Apc5: Anaphase-promot 70.6 17 0.00037 26.4 5.8 54 394-447 8-70 (94)
385 COG2909 MalT ATP-dependent tra 69.9 1.5E+02 0.0033 31.3 26.1 217 224-443 424-684 (894)
386 KOG0545 Aryl-hydrocarbon recep 69.3 37 0.0008 29.7 8.0 61 387-447 233-293 (329)
387 PF08311 Mad3_BUB1_I: Mad3/BUB 67.7 37 0.0008 26.4 7.4 61 380-443 62-124 (126)
388 KOG0403 Neoplastic transformat 66.6 1.3E+02 0.0028 29.1 27.4 103 386-496 511-617 (645)
389 KOG0551 Hsp90 co-chaperone CNS 66.0 34 0.00075 31.3 7.5 90 355-444 84-179 (390)
390 PRK13342 recombination factor 65.2 1.4E+02 0.003 29.0 13.7 43 183-225 230-275 (413)
391 COG1747 Uncharacterized N-term 64.9 1.5E+02 0.0032 29.3 22.9 175 179-362 65-249 (711)
392 PRK12798 chemotaxis protein; R 64.8 1.3E+02 0.0029 28.7 21.6 30 385-414 258-287 (421)
393 PF04762 IKI3: IKI3 family; I 64.6 2.2E+02 0.0048 31.2 15.5 114 250-378 812-927 (928)
394 KOG4642 Chaperone-dependent E3 64.1 1E+02 0.0022 27.0 9.8 81 260-342 20-104 (284)
395 PF04910 Tcf25: Transcriptiona 63.8 1.4E+02 0.0029 28.4 14.2 120 315-446 39-167 (360)
396 PF10255 Paf67: RNA polymerase 63.4 57 0.0012 31.2 9.0 25 420-444 166-190 (404)
397 COG5159 RPN6 26S proteasome re 62.1 1.2E+02 0.0026 27.3 12.2 122 185-306 8-150 (421)
398 PF11846 DUF3366: Domain of un 61.7 37 0.0008 28.7 7.0 34 382-415 142-175 (193)
399 PF08967 DUF1884: Domain of un 61.4 11 0.00023 26.1 2.8 25 477-501 7-31 (85)
400 KOG2396 HAT (Half-A-TPR) repea 61.0 1.7E+02 0.0038 28.7 20.7 97 313-412 456-558 (568)
401 PF11846 DUF3366: Domain of un 60.9 43 0.00093 28.3 7.3 56 327-382 119-175 (193)
402 PF13170 DUF4003: Protein of u 60.2 1.4E+02 0.003 27.4 20.6 146 297-444 78-243 (297)
403 PF04190 DUF410: Protein of un 60.1 1.3E+02 0.0028 27.0 19.6 157 161-344 2-169 (260)
404 TIGR02270 conserved hypothetic 59.7 1.7E+02 0.0038 28.3 25.4 53 138-190 89-141 (410)
405 KOG4507 Uncharacterized conser 59.3 33 0.00072 34.0 6.7 101 328-429 619-721 (886)
406 PF09670 Cas_Cas02710: CRISPR- 59.2 1.7E+02 0.0037 28.0 12.5 57 187-244 138-198 (379)
407 cd08326 CARD_CASP9 Caspase act 58.9 30 0.00066 24.5 4.9 33 163-195 44-76 (84)
408 KOG0687 26S proteasome regulat 58.7 1.5E+02 0.0033 27.3 11.3 91 251-343 105-208 (393)
409 KOG4077 Cytochrome c oxidase, 58.6 76 0.0016 24.5 7.1 43 201-243 70-112 (149)
410 COG0790 FOG: TPR repeat, SEL1 58.5 1.4E+02 0.0031 27.0 20.4 48 399-449 206-268 (292)
411 PRK10941 hypothetical protein; 58.4 1.4E+02 0.0031 26.9 10.6 79 284-363 184-262 (269)
412 PF04910 Tcf25: Transcriptiona 58.4 1.7E+02 0.0037 27.8 18.3 125 115-243 37-167 (360)
413 PF10366 Vps39_1: Vacuolar sor 58.1 78 0.0017 23.8 7.5 27 283-309 41-67 (108)
414 PF14863 Alkyl_sulf_dimr: Alky 58.0 56 0.0012 26.0 6.8 62 368-432 57-118 (141)
415 cd00280 TRFH Telomeric Repeat 57.6 88 0.0019 26.1 7.8 20 324-343 119-138 (200)
416 PF11663 Toxin_YhaV: Toxin wit 57.0 15 0.00032 28.6 3.2 34 55-90 105-138 (140)
417 KOG0687 26S proteasome regulat 56.6 1.6E+02 0.0036 27.1 13.6 21 321-341 109-129 (393)
418 PRK11619 lytic murein transgly 56.4 2.5E+02 0.0055 29.2 37.2 137 52-196 40-179 (644)
419 PF04097 Nic96: Nup93/Nic96; 56.1 2.5E+02 0.0054 29.0 19.3 151 257-411 265-441 (613)
420 smart00777 Mad3_BUB1_I Mad3/BU 55.2 97 0.0021 24.0 8.2 42 401-442 80-123 (125)
421 PF11848 DUF3368: Domain of un 55.2 36 0.00079 21.0 4.3 38 52-89 9-46 (48)
422 COG2256 MGS1 ATPase related to 54.5 2E+02 0.0044 27.5 12.8 46 180-225 246-294 (436)
423 KOG0686 COP9 signalosome, subu 54.4 2E+02 0.0044 27.4 15.4 60 182-241 152-213 (466)
424 COG4976 Predicted methyltransf 53.9 23 0.00049 30.6 4.1 51 396-446 7-57 (287)
425 PF11817 Foie-gras_1: Foie gra 53.8 89 0.0019 27.7 8.3 56 220-275 183-243 (247)
426 COG5108 RPO41 Mitochondrial DN 53.6 91 0.002 31.7 8.6 72 321-393 33-112 (1117)
427 PF08424 NRDE-2: NRDE-2, neces 53.1 1.9E+02 0.0042 26.9 15.1 79 196-276 47-128 (321)
428 PF10366 Vps39_1: Vacuolar sor 53.0 96 0.0021 23.3 8.4 27 182-208 41-67 (108)
429 PF08311 Mad3_BUB1_I: Mad3/BUB 52.4 1.1E+02 0.0024 23.8 8.4 95 44-143 21-124 (126)
430 PF13762 MNE1: Mitochondrial s 52.2 1.2E+02 0.0026 24.2 8.9 83 46-131 40-128 (145)
431 PRK10564 maltose regulon perip 52.1 32 0.00068 31.2 5.0 37 182-218 259-295 (303)
432 KOG4279 Serine/threonine prote 51.9 3E+02 0.0066 28.7 12.8 183 232-417 180-399 (1226)
433 PF10255 Paf67: RNA polymerase 51.8 2E+02 0.0044 27.7 10.5 55 153-207 126-191 (404)
434 cd00280 TRFH Telomeric Repeat 51.2 1.1E+02 0.0023 25.6 7.4 65 332-396 85-155 (200)
435 PF13762 MNE1: Mitochondrial s 50.1 1.3E+02 0.0028 24.0 10.9 76 253-328 42-127 (145)
436 PF11768 DUF3312: Protein of u 50.0 2.7E+02 0.006 27.8 11.2 25 253-277 411-435 (545)
437 KOG4567 GTPase-activating prot 49.4 2.1E+02 0.0046 26.2 9.8 41 237-277 265-305 (370)
438 KOG3824 Huntingtin interacting 48.9 33 0.00072 31.0 4.6 59 363-421 127-187 (472)
439 PRK13342 recombination factor 48.7 2.6E+02 0.0057 27.1 16.0 40 285-324 231-273 (413)
440 COG0735 Fur Fe2+/Zn2+ uptake r 48.7 1E+02 0.0022 24.7 7.1 62 202-264 8-69 (145)
441 PF14689 SPOB_a: Sensor_kinase 48.1 52 0.0011 21.7 4.4 22 221-242 29-50 (62)
442 PF11848 DUF3368: Domain of un 48.0 65 0.0014 19.9 5.2 31 191-221 13-43 (48)
443 PF11838 ERAP1_C: ERAP1-like C 47.7 2.3E+02 0.005 26.2 18.0 110 332-442 146-261 (324)
444 PRK10564 maltose regulon perip 47.6 42 0.00091 30.4 5.1 39 283-321 259-297 (303)
445 cd08326 CARD_CASP9 Caspase act 46.9 89 0.0019 22.2 5.7 61 103-168 20-80 (84)
446 KOG0376 Serine-threonine phosp 46.7 50 0.0011 32.0 5.7 88 187-277 11-99 (476)
447 COG4259 Uncharacterized protei 46.4 81 0.0018 23.1 5.3 44 401-444 54-98 (121)
448 PF00244 14-3-3: 14-3-3 protei 46.4 2.1E+02 0.0045 25.2 10.6 157 186-342 7-195 (236)
449 PF14689 SPOB_a: Sensor_kinase 46.0 33 0.00072 22.6 3.3 27 420-446 25-51 (62)
450 PF07064 RIC1: RIC1; InterPro 45.6 2.3E+02 0.0049 25.4 14.1 153 284-447 85-249 (258)
451 KOG2659 LisH motif-containing 45.5 2.1E+02 0.0044 24.9 10.1 98 312-412 22-131 (228)
452 smart00777 Mad3_BUB1_I Mad3/BU 45.4 1.4E+02 0.0031 23.1 7.1 42 101-142 82-123 (125)
453 KOG2396 HAT (Half-A-TPR) repea 45.2 3.2E+02 0.0069 27.0 31.9 239 199-446 301-558 (568)
454 TIGR02270 conserved hypothetic 44.3 3.1E+02 0.0067 26.6 25.5 232 52-307 45-278 (410)
455 KOG1114 Tripeptidyl peptidase 44.3 4.5E+02 0.0097 28.5 14.7 72 298-369 1213-1284(1304)
456 KOG4567 GTPase-activating prot 43.9 2.6E+02 0.0056 25.7 9.6 90 101-192 262-361 (370)
457 COG2912 Uncharacterized conser 43.6 1E+02 0.0022 27.6 6.8 60 388-447 185-244 (269)
458 KOG0545 Aryl-hydrocarbon recep 43.3 2.4E+02 0.0051 25.0 8.9 91 187-278 185-292 (329)
459 TIGR02328 conserved hypothetic 43.1 19 0.00042 26.7 1.9 24 478-501 48-71 (120)
460 PF12862 Apc5: Anaphase-promot 43.0 1.3E+02 0.0027 21.8 8.3 24 322-345 47-70 (94)
461 cd08332 CARD_CASP2 Caspase act 42.7 63 0.0014 23.3 4.6 29 164-192 49-77 (90)
462 PF06957 COPI_C: Coatomer (COP 42.5 98 0.0021 29.9 7.0 44 374-417 288-333 (422)
463 PF14669 Asp_Glu_race_2: Putat 42.5 2.1E+02 0.0045 24.2 12.6 55 220-274 137-205 (233)
464 PRK09857 putative transposase; 42.1 1.8E+02 0.004 26.6 8.5 64 388-451 210-273 (292)
465 PF11817 Foie-gras_1: Foie gra 41.5 1.1E+02 0.0025 27.1 7.0 17 326-342 188-204 (247)
466 KOG1308 Hsp70-interacting prot 41.3 35 0.00076 31.4 3.6 115 226-343 125-242 (377)
467 PF11663 Toxin_YhaV: Toxin wit 40.9 37 0.00079 26.5 3.2 33 190-224 105-137 (140)
468 PF13934 ELYS: Nuclear pore co 40.7 2.5E+02 0.0054 24.5 11.7 115 118-237 76-198 (226)
469 PF12968 DUF3856: Domain of Un 40.6 1.7E+02 0.0036 22.5 6.9 59 386-444 57-126 (144)
470 PF07575 Nucleopor_Nup85: Nup8 40.0 4.3E+02 0.0093 27.1 19.2 137 301-453 390-530 (566)
471 KOG4814 Uncharacterized conser 39.3 2.1E+02 0.0046 29.2 8.6 86 362-447 364-457 (872)
472 COG5108 RPO41 Mitochondrial DN 39.0 2.6E+02 0.0056 28.7 9.2 70 123-192 33-115 (1117)
473 COG0735 Fur Fe2+/Zn2+ uptake r 38.8 2E+02 0.0043 23.0 7.3 20 324-343 28-47 (145)
474 KOG2300 Uncharacterized conser 38.4 4E+02 0.0087 26.3 20.0 212 166-377 299-553 (629)
475 TIGR03581 EF_0839 conserved hy 38.2 1.7E+02 0.0038 25.1 6.9 79 367-445 136-235 (236)
476 KOG2659 LisH motif-containing 38.0 2.7E+02 0.0059 24.2 9.4 94 282-378 27-129 (228)
477 PF10345 Cohesin_load: Cohesin 37.4 4.9E+02 0.011 27.0 30.5 50 397-446 547-605 (608)
478 PRK09462 fur ferric uptake reg 37.3 2E+02 0.0044 23.0 7.3 60 205-265 7-67 (148)
479 PF14561 TPR_20: Tetratricopep 37.1 1.6E+02 0.0034 21.2 8.1 53 383-435 21-75 (90)
480 cd08323 CARD_APAF1 Caspase act 36.8 1.3E+02 0.0029 21.4 5.4 29 164-192 43-71 (86)
481 PF07575 Nucleopor_Nup85: Nup8 36.7 67 0.0014 32.8 5.4 25 45-70 149-173 (566)
482 PF05570 DUF765: Circovirus pr 36.7 17 0.00036 18.6 0.6 17 1-17 1-17 (29)
483 KOG0889 Histone acetyltransfer 36.2 1E+03 0.023 30.4 25.4 90 358-447 2742-2841(3550)
484 PF11768 DUF3312: Protein of u 36.2 2.4E+02 0.0052 28.2 8.5 58 356-413 412-473 (545)
485 PF07720 TPR_3: Tetratricopept 36.2 87 0.0019 17.9 4.7 15 392-406 9-23 (36)
486 PRK11639 zinc uptake transcrip 35.9 1.8E+02 0.0039 24.0 6.8 61 307-369 17-77 (169)
487 COG0790 FOG: TPR repeat, SEL1 34.7 3.5E+02 0.0076 24.5 21.7 112 164-278 92-219 (292)
488 KOG2034 Vacuolar sorting prote 33.9 6.2E+02 0.013 27.1 24.2 307 124-452 364-701 (911)
489 COG2178 Predicted RNA-binding 33.5 3E+02 0.0065 23.3 9.1 19 428-446 131-149 (204)
490 KOG0889 Histone acetyltransfer 33.5 1.2E+03 0.025 30.1 20.2 20 53-72 2490-2509(3550)
491 COG5159 RPN6 26S proteasome re 33.5 3.7E+02 0.008 24.4 19.0 260 154-415 8-316 (421)
492 PF02847 MA3: MA3 domain; Int 33.0 2.1E+02 0.0045 21.4 7.3 24 155-178 8-31 (113)
493 PF15297 CKAP2_C: Cytoskeleton 32.6 2.2E+02 0.0048 26.6 7.3 58 364-421 114-177 (353)
494 KOG0991 Replication factor C, 32.4 3.5E+02 0.0076 23.8 14.5 50 381-431 236-285 (333)
495 PF00356 LacI: Bacterial regul 32.0 50 0.0011 20.2 2.3 17 483-499 30-46 (46)
496 COG4976 Predicted methyltransf 31.9 1E+02 0.0022 26.9 4.7 53 364-416 7-61 (287)
497 PF09454 Vps23_core: Vps23 cor 31.6 97 0.0021 20.7 3.7 45 215-260 8-52 (65)
498 PRK11639 zinc uptake transcrip 31.6 2.1E+02 0.0047 23.5 6.7 60 206-266 17-76 (169)
499 cd08332 CARD_CASP2 Caspase act 31.2 2E+02 0.0044 20.7 5.6 36 129-164 45-80 (90)
500 KOG0292 Vesicle coat complex C 30.1 68 0.0015 33.7 4.0 44 364-410 655-698 (1202)
No 1
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2.8e-70 Score=558.71 Aligned_cols=463 Identities=30% Similarity=0.500 Sum_probs=432.8
Q ss_pred CCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCC-CCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCch
Q 010496 40 STVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHG-TNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNV 118 (509)
Q Consensus 40 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 118 (509)
...++..+|+.+|.+|.+.|++++|+.+|+.|...+ +.||..+|+.++.+|++. ++.+.+.+++..|.+.|+.|+ .
T Consensus 82 ~~~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~--~~~~~a~~l~~~m~~~g~~~~-~ 158 (697)
T PLN03081 82 QIRKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIAL--KSIRCVKAVYWHVESSGFEPD-Q 158 (697)
T ss_pred cCCCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhCCCcc-h
Confidence 345567799999999999999999999999998764 789999999999999998 999999999999999999987 8
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhc------------------------
Q 010496 119 MVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDE------------------------ 174 (509)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~------------------------ 174 (509)
.+|+.|+.+|++.|+++.|.++|++|..||..+|+.++.+|++.|++++|.++|++
T Consensus 159 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 159 YMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCC
Confidence 88888888888888888888888888877777776666666666655555555554
Q ss_pred ----------------------------------------------CCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010496 175 ----------------------------------------------MPVRDAISWTALLNGFVKRGYFEEALECFREMQI 208 (509)
Q Consensus 175 ----------------------------------------------~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 208 (509)
|..+|..+||+++.+|++.|++++|+++|++|.+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~ 318 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRD 318 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 4466889999999999999999999999999999
Q ss_pred cCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHH
Q 010496 209 SGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSII 288 (509)
Q Consensus 209 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~ 288 (509)
.|+.||..||+.++.+|++.|++++|.+++..|.+.|++++..+|+.|+.+|++.|++++|.++|++|.++|..+||.||
T Consensus 319 ~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI 398 (697)
T PLN03081 319 SGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALI 398 (697)
T ss_pred cCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 010496 289 VGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRL 368 (509)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 368 (509)
.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|..++|.++|+.|.+..++.|+..+|+.++++|++.|++
T Consensus 399 ~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~ 478 (697)
T PLN03081 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478 (697)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH
Confidence 99999999999999999999999999999999999999999999999999999997789999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 369 EDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 369 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
++|.+++++|+..|+..+|++|+.+|...|+++.|..+++++.+.+|.+...|..|+.+|++.|++++|.+++++|.+.|
T Consensus 479 ~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 479 DEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CccCCcccEEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHcCccCCCCcccc
Q 010496 449 IQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPETVAGEL 505 (509)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~pd~~~~~~ 505 (509)
+...|+++|+.+++.+|.|..++.+||...+++..++.+..+|++.||.||+....+
T Consensus 559 ~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~~~ 615 (697)
T PLN03081 559 LSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLP 615 (697)
T ss_pred CccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchhhc
Confidence 999999999999999999999999999999999999999999999999999886554
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=3.3e-68 Score=556.21 Aligned_cols=462 Identities=34% Similarity=0.638 Sum_probs=429.4
Q ss_pred cCCCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCc
Q 010496 38 SKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNN 117 (509)
Q Consensus 38 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 117 (509)
+..+.||+.+||++|.+|++.|++++|+.+|++|.+.|+.||..||+.++.+|++. ++.+.+.+++..+.+.|+.|+
T Consensus 246 ~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~--g~~~~a~~l~~~~~~~g~~~d- 322 (857)
T PLN03077 246 DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL--GDERLGREMHGYVVKTGFAVD- 322 (857)
T ss_pred hcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc--CChHHHHHHHHHHHHhCCccc-
Confidence 34667999999999999999999999999999999999999999999999999999 999999999999999999998
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcC----------------------
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEM---------------------- 175 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---------------------- 175 (509)
..+|+.|+.+|++.|++++|.++|++|..+|..+|+.++.+|++.|++++|.++|++|
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~ 402 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL 402 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc
Confidence 9999999999999999999999999998887777777777777777777666666655
Q ss_pred ------------------------------------------------CCCCHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010496 176 ------------------------------------------------PVRDAISWTALLNGFVKRGYFEEALECFREMQ 207 (509)
Q Consensus 176 ------------------------------------------------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 207 (509)
.++|..+|+++|.+|++.|+.++|+++|++|.
T Consensus 403 g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 403 GDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34456666666666666667777777777776
Q ss_pred HcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHH
Q 010496 208 ISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSI 287 (509)
Q Consensus 208 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l 287 (509)
. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..+++.|+.+|++.|++++|.++|+.+ .+|..+|+.+
T Consensus 483 ~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~l 560 (857)
T PLN03077 483 L-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNIL 560 (857)
T ss_pred h-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHH
Confidence 4 4789999999999999999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC
Q 010496 288 IVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGR 367 (509)
Q Consensus 288 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 367 (509)
|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+..++.|+..+|+.++++|++.|+
T Consensus 561 I~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~ 640 (857)
T PLN03077 561 LTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGK 640 (857)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999778999999999999999999999
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 368 LEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 368 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+++|.+++++|+++||..+|++|+.+|...|+.+.+....+++.+..|++...|..|++.|...|+|++|.++.+.|+++
T Consensus 641 ~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 641 LTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCcccEEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHcCccCCCCccc
Q 010496 448 GIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPETVAGE 504 (509)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~pd~~~~~ 504 (509)
|+.++|+++|+++++.+|.|..++++||...+++..++.+..+|++.||.||+....
T Consensus 721 g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~~ 777 (857)
T PLN03077 721 GLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSM 777 (857)
T ss_pred CCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchhc
Confidence 999999999999999999999999999999999999999999999999999987654
No 3
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=8.2e-59 Score=476.77 Aligned_cols=459 Identities=17% Similarity=0.252 Sum_probs=408.6
Q ss_pred ccCCCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCC-CCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCC
Q 010496 37 NSKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGT-NPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDR 115 (509)
Q Consensus 37 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 115 (509)
......+|+..|..++..+++.|++++|+++|+.|...|+ .|+..+++.++..|.+. +....|..++..|.. |
T Consensus 362 ~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~--g~~~eAl~lf~~M~~----p 435 (1060)
T PLN03218 362 GGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ--RAVKEAFRFAKLIRN----P 435 (1060)
T ss_pred cccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC--CCHHHHHHHHHHcCC----C
Confidence 3346778899999999999999999999999999999995 56778888999999998 999999999888864 7
Q ss_pred CchHHHHHHHHHHHhcCCchHHHHHHHhcC----CCChHHHHHHHHHHHhCCCHHHHHHHHhcCC----CCCHhHHHHHH
Q 010496 116 NNVMVGTALLDMYAKFGRMDLATVVFDAMR----VKSSFTWNAMIDGYMRRGDIESAVRMFDEMP----VRDAISWTALL 187 (509)
Q Consensus 116 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li 187 (509)
+ ..+|+.++.+|++.|+++.|.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|
T Consensus 436 d-~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI 514 (1060)
T PLN03218 436 T-LSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALI 514 (1060)
T ss_pred C-HHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 6 9999999999999999999999999997 4699999999999999999999999999997 57999999999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH--cCCCCcHhHHHHHHHHHHhcCC
Q 010496 188 NGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLK--QDFKDNVKVCNTLIDLYSRCGC 265 (509)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~ 265 (509)
.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+ .|+.||..+|+.++.+|++.|+
T Consensus 515 ~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ 594 (1060)
T PLN03218 515 DGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQ 594 (1060)
T ss_pred HHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCC
Confidence 99999999999999999999999999999999999999999999999999999986 5789999999999999999999
Q ss_pred HHHHHHHHHhccC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010496 266 IEFARQVFQRMHK----RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDI 341 (509)
Q Consensus 266 ~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 341 (509)
+++|.++|+.|.+ ++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.
T Consensus 595 ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~e 674 (1060)
T PLN03218 595 VDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQD 674 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999985 467999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-C
Q 010496 342 MKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM---PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG-V 417 (509)
Q Consensus 342 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~ 417 (509)
|. +.|+.|+..+|+.||.+|++.|++++|.++|++| +..||..+|+.|+.+|++.|++++|.++|++|.+.+.. +
T Consensus 675 M~-k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd 753 (1060)
T PLN03218 675 AR-KQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753 (1060)
T ss_pred HH-HcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99 6799999999999999999999999999999998 58899999999999999999999999999999987765 5
Q ss_pred CchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecC----------CCCCCch-HHHHHHHHH
Q 010496 418 DSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAG----------DRSHIES-EHIYSMLEL 486 (509)
Q Consensus 418 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~-~~~~~~~~~ 486 (509)
..+|..++.+|++.|++++|.+++++|.+.|+.|+..++..++.-....|... ...++.. ..-....-.
T Consensus 754 ~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~ 833 (1060)
T PLN03218 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALM 833 (1060)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHH
Confidence 56899999999999999999999999999999998754433321100000000 0001100 011133556
Q ss_pred HHHHHHHcCccCCCCcc
Q 010496 487 LSFDLKLCGYVPETVAG 503 (509)
Q Consensus 487 ~~~~m~~~g~~pd~~~~ 503 (509)
++++|.+.|+.||..+.
T Consensus 834 lf~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 834 VYRETISAGTLPTMEVL 850 (1060)
T ss_pred HHHHHHHCCCCCCHHHH
Confidence 77899999999997654
No 4
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.6e-58 Score=483.32 Aligned_cols=443 Identities=28% Similarity=0.466 Sum_probs=393.4
Q ss_pred CCCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCch
Q 010496 39 KSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNV 118 (509)
Q Consensus 39 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 118 (509)
....||+.+||++|.+|++.|++++|+.+|++|...|+.||..||+.++.+|+.. ++...+.+++..+.+.|+.|+ .
T Consensus 146 ~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~--~~~~~~~~~~~~~~~~g~~~~-~ 222 (857)
T PLN03077 146 KMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGI--PDLARGREVHAHVVRFGFELD-V 222 (857)
T ss_pred cCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCc--cchhhHHHHHHHHHHcCCCcc-c
Confidence 3567999999999999999999999999999999999999999999999999998 999999999999999999988 8
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHH--------------------------------------
Q 010496 119 MVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYM-------------------------------------- 160 (509)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~-------------------------------------- 160 (509)
.+++.|+.+|++.|+++.|.++|++|..+|..+|+++|.+|+
T Consensus 223 ~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g 302 (857)
T PLN03077 223 DVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG 302 (857)
T ss_pred chHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence 999999999999999999999999887666555555555544
Q ss_pred --------------------------------hCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010496 161 --------------------------------RRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQI 208 (509)
Q Consensus 161 --------------------------------~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 208 (509)
+.|++++|.++|++|..+|..+|+++|.+|++.|++++|+++|++|.+
T Consensus 303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~ 382 (857)
T PLN03077 303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ 382 (857)
T ss_pred ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 455566666666666677888999999999999999999999999999
Q ss_pred cCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHH
Q 010496 209 SGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSII 288 (509)
Q Consensus 209 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~ 288 (509)
.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.++..+|+.|+.+|++.|++++|.++|++|.++|..+|+.++
T Consensus 383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi 462 (857)
T PLN03077 383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSII 462 (857)
T ss_pred hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 010496 289 VGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRL 368 (509)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 368 (509)
.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|..+.+.+++..+. +.|+.++..+++.|+++|+++|++
T Consensus 463 ~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~-~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 463 AGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL-RTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH-HhCCCccceechHHHHHHHHcCCH
Confidence 999999999999999999986 599999999999999999999999999999999 679999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHcCCchHHHHHHHHHH-h
Q 010496 369 EDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG-VDSNYVLLANMYAAVGKWDGAGKIRRTMK-G 446 (509)
Q Consensus 369 ~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~ 446 (509)
++|.++|+.+ .||..+|+.++.+|++.|+.++|.++|++|.+.+.. +..+|..++.+|.+.|++++|.++|++|. +
T Consensus 541 ~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~ 618 (857)
T PLN03077 541 NYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEK 618 (857)
T ss_pred HHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHH
Confidence 9999999998 789999999999999999999999999999997765 66789999999999999999999999998 6
Q ss_pred CCCccCCcccEEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHcCccCCCCcc
Q 010496 447 RGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPETVAG 503 (509)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~pd~~~~ 503 (509)
.|+.|+... ++.++..++..+ ...++.+.+ +.| +++||...+
T Consensus 619 ~gi~P~~~~----y~~lv~~l~r~G----~~~eA~~~~----~~m---~~~pd~~~~ 660 (857)
T PLN03077 619 YSITPNLKH----YACVVDLLGRAG----KLTEAYNFI----NKM---PITPDPAVW 660 (857)
T ss_pred hCCCCchHH----HHHHHHHHHhCC----CHHHHHHHH----HHC---CCCCCHHHH
Confidence 799887654 344444555533 233333333 233 567776543
No 5
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2e-57 Score=466.62 Aligned_cols=376 Identities=22% Similarity=0.316 Sum_probs=215.8
Q ss_pred CCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHH
Q 010496 43 NPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGT 122 (509)
Q Consensus 43 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 122 (509)
|+..+++.++.+|++.|..++|+.+|+.|.. ||..+|+.+|.+|++. ++.+.|.+++..|.+.|+.|+ ..+|+
T Consensus 404 ~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~--g~~e~A~~lf~~M~~~Gl~pD-~~tyn 476 (1060)
T PLN03218 404 MDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASS--QDIDGALRVLRLVQEAGLKAD-CKLYT 476 (1060)
T ss_pred chHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhC--cCHHHHHHHHHHHHHcCCCCC-HHHHH
Confidence 4444555555555555555555555555542 5555555555555555 555555555555555555555 55555
Q ss_pred HHHHHHHhcCCchHHHHHHHhcC----CCChHHHHHHHHHHHhCCCHHHHHHHHhcCC----CCCHhHHHHHHHHHHHcC
Q 010496 123 ALLDMYAKFGRMDLATVVFDAMR----VKSSFTWNAMIDGYMRRGDIESAVRMFDEMP----VRDAISWTALLNGFVKRG 194 (509)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~ 194 (509)
.|+.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|+.|. .||..+|+.+|.+|++.|
T Consensus 477 sLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G 556 (1060)
T PLN03218 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG 556 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence 55555555555555555555554 3455555555555555555555555555553 245555555555555555
Q ss_pred ChHHHHHHHHHHHH--cCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 010496 195 YFEEALECFREMQI--SGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQV 272 (509)
Q Consensus 195 ~~~~A~~~~~~m~~--~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 272 (509)
++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+.|.+.|++|+..+|+.++.+|++.|++++|.++
T Consensus 557 ~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~l 636 (1060)
T PLN03218 557 AVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSI 636 (1060)
T ss_pred CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHH
Confidence 55555555555544 3455555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHhcc----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC
Q 010496 273 FQRMH----KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRV 348 (509)
Q Consensus 273 ~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~ 348 (509)
|++|. .||..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|. ..++
T Consensus 637 f~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~-~~g~ 715 (1060)
T PLN03218 637 YDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK-SIKL 715 (1060)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH-HcCC
Confidence 55554 245555555555555555555555555555555555555555555555555555555555555555 3455
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-CCchHHHH
Q 010496 349 SPRIEHYGCIVDLYSRAGRLEDALNVVENM---PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG-VDSNYVLL 424 (509)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l 424 (509)
.|+..+|+.||.+|++.|++++|.++|++| ++.||..+|+.++.+|++.|++++|.+++++|.+.+.. +..+|..+
T Consensus 716 ~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsL 795 (1060)
T PLN03218 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCI 795 (1060)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 555555555555555555555555555555 35555555555555555555555555555555555544 23345554
Q ss_pred HH
Q 010496 425 AN 426 (509)
Q Consensus 425 ~~ 426 (509)
+.
T Consensus 796 Ig 797 (1060)
T PLN03218 796 TG 797 (1060)
T ss_pred HH
Confidence 43
No 6
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=3.1e-52 Score=426.05 Aligned_cols=407 Identities=24% Similarity=0.349 Sum_probs=373.8
Q ss_pred CCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHhcCCchHHHHHHHhcC----CCChH
Q 010496 76 TNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLG-LDRNNVMVGTALLDMYAKFGRMDLATVVFDAMR----VKSSF 150 (509)
Q Consensus 76 ~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~ 150 (509)
..++..+|+.++.++.+. |+...|.+++..|...+ ..|+ ..+|+.++.+|++.++++.|.+++..|. .+|..
T Consensus 83 ~~~~~~~~~~~i~~l~~~--g~~~~Al~~f~~m~~~~~~~~~-~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~ 159 (697)
T PLN03081 83 IRKSGVSLCSQIEKLVAC--GRHREALELFEILEAGCPFTLP-ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159 (697)
T ss_pred CCCCceeHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH
Confidence 355677999999999999 99999999999999875 5676 9999999999999999999999999986 47999
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC
Q 010496 151 TWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGT 230 (509)
Q Consensus 151 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 230 (509)
+|+.++.+|++.|++++|.++|++|..+|..+|++++.+|++.|++++|+++|++|.+.|+.|+..+|..++.+|++.|.
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010496 231 LGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKE 310 (509)
Q Consensus 231 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 310 (509)
.+.+.+++..+.+.|+.+|..+|+.|+.+|++.|++++|.++|++|.++|+++|+.++.+|++.|++++|+++|++|.+.
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~ 319 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 010496 311 GFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSL 390 (509)
Q Consensus 311 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 390 (509)
|+.||..||+.++.+|++.|++++|.+++..|. +.|+.|+..+|+.|+++|+++|++++|.++|++|. +||..+|+.|
T Consensus 320 g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~-~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~l 397 (697)
T PLN03081 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI-RTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNAL 397 (697)
T ss_pred CCCCCHHHHHHHHHHHHhccchHHHHHHHHHHH-HhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHH
Confidence 999999999999999999999999999999999 67999999999999999999999999999999996 5799999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHcCCchHHHHHHHHHHh-CCCccCCcccEEEECCEEEEEe
Q 010496 391 LAACRTKGDIILAERLMKYLVDLDPG-VDSNYVLLANMYAAVGKWDGAGKIRRTMKG-RGIQKKPGLSSIEIGSGIHEFM 468 (509)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~~~~~~~~~~~~~~~~~~ 468 (509)
+.+|++.|+.++|.++|++|.+.+.. +..+|..++.+|.+.|+.++|.++|+.|.+ .|+.|+... ++.++..|+
T Consensus 398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~----y~~li~~l~ 473 (697)
T PLN03081 398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH----YACMIELLG 473 (697)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccc----hHhHHHHHH
Confidence 99999999999999999999998766 566899999999999999999999999986 688887643 455555565
Q ss_pred cCCCCCCchHHHHHHHHHHHHHHHHcCccCCCCc
Q 010496 469 AGDRSHIESEHIYSMLELLSFDLKLCGYVPETVA 502 (509)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~m~~~g~~pd~~~ 502 (509)
..+ ...++.+. +++.+++||...
T Consensus 474 r~G----~~~eA~~~-------~~~~~~~p~~~~ 496 (697)
T PLN03081 474 REG----LLDEAYAM-------IRRAPFKPTVNM 496 (697)
T ss_pred hcC----CHHHHHHH-------HHHCCCCCCHHH
Confidence 533 33333332 334566666544
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=2.1e-26 Score=246.49 Aligned_cols=397 Identities=14% Similarity=0.093 Sum_probs=321.4
Q ss_pred CCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHH
Q 010496 41 TVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMV 120 (509)
Q Consensus 41 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 120 (509)
.++++.+|+.+...+...|++++|...|+++.+.. +.+...+..+...+... |+.+.|...+..+.+.+ |++..+
T Consensus 461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~--g~~~~A~~~~~~~~~~~--~~~~~~ 535 (899)
T TIGR02917 461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQE--GNPDDAIQRFEKVLTID--PKNLRA 535 (899)
T ss_pred CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhC--cCcHHH
Confidence 34567789999999999999999999999998743 22445566666677777 99999999999998875 666888
Q ss_pred HHHHHHHHHhcCCchHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHcC
Q 010496 121 GTALLDMYAKFGRMDLATVVFDAMRV---KSSFTWNAMIDGYMRRGDIESAVRMFDEMPV---RDAISWTALLNGFVKRG 194 (509)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~ 194 (509)
+..+...+.+.|+.++|...++++.. .+...+..++..|.+.|++++|..+++.+.. .+...|..+..++...|
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 99999999999999999999998853 2556777888889999999999999987753 36778889999999999
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 010496 195 YFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQ 274 (509)
Q Consensus 195 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 274 (509)
++++|...|+++.+.. +.+...+..+..++...|++++|..+++++.+.. +.+..++..++..+...|++++|.++++
T Consensus 616 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 693 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAK 693 (899)
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999988753 4456778888888889999999999999988875 6677888888889999999999999888
Q ss_pred hccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 010496 275 RMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR 351 (509)
Q Consensus 275 ~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 351 (509)
.+.+ .+...+..+...+...|++++|.+.|+++... .|+..++..+..++.+.|++++|...++++.+ ..+.+
T Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~ 769 (899)
T TIGR02917 694 SLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPND 769 (899)
T ss_pred HHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCC
Confidence 8864 35567777888888888999999998888876 34556677788888888888888888888874 33456
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMK-PNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYA 429 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 429 (509)
...+..+...|...|++++|.+.|+++ ... ++..++..+...+...|+ .+|+..++++.+..|.++..+..++.++.
T Consensus 770 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 848 (899)
T TIGR02917 770 AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLV 848 (899)
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 778888888888888888888888886 333 356677888888888888 77888888888888887777888888888
Q ss_pred HcCCchHHHHHHHHHHhCCC
Q 010496 430 AVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~ 449 (509)
..|++++|.++++++.+.+.
T Consensus 849 ~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 849 EKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCC
Confidence 88888888888888887654
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.97 E-value=3e-26 Score=245.22 Aligned_cols=391 Identities=15% Similarity=0.051 Sum_probs=323.8
Q ss_pred ccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHH
Q 010496 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTAL 124 (509)
Q Consensus 45 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 124 (509)
...+..++..+.+.|++++|+.+++.+... .+++...+..+...+... ++.+.|...+..+.+.. |++...+..+
T Consensus 431 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~--~~~~~~~~~l 505 (899)
T TIGR02917 431 GRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGK--GDLAKAREAFEKALSIE--PDFFPAAANL 505 (899)
T ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhC--CCHHHHHHHHHHHHhhC--CCcHHHHHHH
Confidence 445667788888999999999999998874 344667788888888887 89999999999888764 6668888888
Q ss_pred HHHHHhcCCchHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHcCChHH
Q 010496 125 LDMYAKFGRMDLATVVFDAMRV---KSSFTWNAMIDGYMRRGDIESAVRMFDEMPV---RDAISWTALLNGFVKRGYFEE 198 (509)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 198 (509)
+..+...|++++|.+.|+++.. .+..++..+...+.+.|++++|...|+.+.. .+...+..++..+...|++++
T Consensus 506 a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 585 (899)
T TIGR02917 506 ARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKK 585 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHH
Confidence 9999999999999999988863 3667888888889999999999999987743 256677888889999999999
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC
Q 010496 199 ALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK 278 (509)
Q Consensus 199 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 278 (509)
|..+++.+.... +.+...|..+..++...|++++|...++++.+.. +.+...+..++.++...|++++|..+|+++.+
T Consensus 586 A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 663 (899)
T TIGR02917 586 ALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALE 663 (899)
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999988753 5567788888999999999999999999988875 56777888889999999999999999988763
Q ss_pred ---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHH
Q 010496 279 ---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHY 355 (509)
Q Consensus 279 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 355 (509)
.+..++..++..+...|++++|..+++.+...+ +.+...+..+...+...|++++|...++.+.+ ..|+..++
T Consensus 664 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 739 (899)
T TIGR02917 664 LKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALK---RAPSSQNA 739 (899)
T ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh---hCCCchHH
Confidence 356788888889999999999999999988874 44667777788888899999999999999884 23555677
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 010496 356 GCIVDLYSRAGRLEDALNVVENM-P-MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGK 433 (509)
Q Consensus 356 ~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 433 (509)
..++.++.+.|++++|.+.++++ . ...+...+..+...|...|++++|.+.|+++++..|+++..+..++..+.+.|+
T Consensus 740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 819 (899)
T TIGR02917 740 IKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD 819 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc
Confidence 78888899999999999988887 3 334667888888888899999999999999999999888889999999999999
Q ss_pred chHHHHHHHHHHhC
Q 010496 434 WDGAGKIRRTMKGR 447 (509)
Q Consensus 434 ~~~A~~~~~~m~~~ 447 (509)
.+|+..++++.+.
T Consensus 820 -~~A~~~~~~~~~~ 832 (899)
T TIGR02917 820 -PRALEYAEKALKL 832 (899)
T ss_pred -HHHHHHHHHHHhh
Confidence 8899999988765
No 9
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.94 E-value=1.7e-23 Score=192.27 Aligned_cols=388 Identities=14% Similarity=0.193 Sum_probs=337.1
Q ss_pred ccccCCCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCC-CcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCC
Q 010496 35 TNNSKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNP-NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGL 113 (509)
Q Consensus 35 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~ 113 (509)
....+....-..+|..+...+-..|++++|+.+++.|++. .| ....|..+..++... |+.+.|.+.+...++.+
T Consensus 106 ~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~--~~~~~a~~~~~~alqln- 180 (966)
T KOG4626|consen 106 LLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQ--GDLELAVQCFFEALQLN- 180 (966)
T ss_pred hhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhc--CCCcccHHHHHHHHhcC-
Confidence 3444555566789999999999999999999999999985 55 567788888888888 99999999999988875
Q ss_pred CCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCC---HhHHHHHH
Q 010496 114 DRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRD---AISWTALL 187 (509)
Q Consensus 114 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li 187 (509)
|+..-+.+.+...+...|++++|...+.+.... =...|..|...+-..|+...|+..|++...-| ..+|-.|.
T Consensus 181 -P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLG 259 (966)
T KOG4626|consen 181 -PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLG 259 (966)
T ss_pred -cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHH
Confidence 776777788888888999999999999887743 34689999999999999999999999886553 67899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 010496 188 NGFVKRGYFEEALECFREMQISGVEPD-YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCI 266 (509)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 266 (509)
..|...+.++.|+..|.+.... .|+ ...+..+...|...|.++.|+..|++.++.. |--...|+.|..++-..|++
T Consensus 260 nV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V 336 (966)
T KOG4626|consen 260 NVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSV 336 (966)
T ss_pred HHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccch
Confidence 9999999999999999998874 554 6678888888999999999999999999986 55578999999999999999
Q ss_pred HHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHh
Q 010496 267 EFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPD-GVSFTGALTACSHAGLIEDGLRYFDIM 342 (509)
Q Consensus 267 ~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~ 342 (509)
.+|.+.|.+... ....+.+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|++++|+..|++.
T Consensus 337 ~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea 414 (966)
T KOG4626|consen 337 TEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEA 414 (966)
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHH
Confidence 999999998764 35578899999999999999999999999884 554 457888999999999999999999999
Q ss_pred HHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010496 343 KKIYRVSPR-IEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 343 ~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 419 (509)
. .+.|+ ...|+.+...|...|+...|.+.+.+. .+.|. ....+.|...|-..|++.+|+..|+.++++.|+.+.
T Consensus 415 l---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpd 491 (966)
T KOG4626|consen 415 L---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPD 491 (966)
T ss_pred H---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCch
Confidence 8 67786 678999999999999999999999886 67775 458899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCchH
Q 010496 420 NYVLLANMYAAVGKWDG 436 (509)
Q Consensus 420 ~~~~l~~~~~~~g~~~~ 436 (509)
+|..++.++.--.+|.+
T Consensus 492 A~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 492 AYCNLLHCLQIVCDWTD 508 (966)
T ss_pred hhhHHHHHHHHHhcccc
Confidence 99999888766666554
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.92 E-value=1.5e-22 Score=186.17 Aligned_cols=415 Identities=16% Similarity=0.170 Sum_probs=315.7
Q ss_pred CCcccCCccccccccccCCCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCC--------------------------
Q 010496 22 NQNLTTTPQISIQTNNSKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHG-------------------------- 75 (509)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-------------------------- 75 (509)
.+....+.+.++.+.....+.-+.. ...|..-..+.|++.+|++.-...-+.+
T Consensus 26 d~~~~s~~s~~v~qq~~~t~~~~~~-~l~lah~~yq~gd~~~a~~h~nmv~~~d~t~~~~llll~ai~~q~~r~d~s~a~ 104 (966)
T KOG4626|consen 26 DQSVSSSGSSSVLQQFNKTHEGSDD-RLELAHRLYQGGDYKQAEKHCNMVGQEDPTNTERLLLLSAIFFQGSRLDKSSAG 104 (966)
T ss_pred ccCcccccchHHHHHhccCCccchh-HHHHHHHHHhccCHHHHHHHHhHhhccCCCcccceeeehhhhhcccchhhhhhh
Confidence 4444455555555555444444333 5556777788999999998755433221
Q ss_pred ------CCC-CcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCCC
Q 010496 76 ------TNP-NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKS 148 (509)
Q Consensus 76 ------~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 148 (509)
+.| -..+|+.+...+... |++..|...+..+++.. |+++..|..+..++...|+.+.|.+.|.+..+-+
T Consensus 105 ~~~a~r~~~q~ae~ysn~aN~~ker--g~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~alqln 180 (966)
T KOG4626|consen 105 SLLAIRKNPQGAEAYSNLANILKER--GQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEALQLN 180 (966)
T ss_pred hhhhhhccchHHHHHHHHHHHHHHh--chHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC
Confidence 001 122344444444444 66666666666666653 5556777777777777777777777776665543
Q ss_pred hHHH---HHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HhHHHHH
Q 010496 149 SFTW---NAMIDGYMRRGDIESAVRMFDEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISGVEPD-YVTIISV 221 (509)
Q Consensus 149 ~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l 221 (509)
+..| ..+...+...|++.+|...+-+..+. -..+|+.|...+-..|+...|+..|++.++ +.|+ ...|..|
T Consensus 181 P~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNL 258 (966)
T KOG4626|consen 181 PDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINL 258 (966)
T ss_pred cchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhH
Confidence 3222 23344445566677766666544332 355788888888888999999999998887 4565 6788889
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHhCCChH
Q 010496 222 LNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVG 298 (509)
Q Consensus 222 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 298 (509)
...|...+.++.|...|.+..... +-...++..+...|...|..+.|+..|++..+. -+..|+.|..++-..|+..
T Consensus 259 GnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ 337 (966)
T KOG4626|consen 259 GNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVT 337 (966)
T ss_pred HHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchH
Confidence 999999999999999998888765 566788888888999999999999999988753 3578999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHh
Q 010496 299 EALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDALNVVEN 377 (509)
Q Consensus 299 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~ 377 (509)
+|.+.|.+.+... .--....+.|...+...|.++.|..+|.... .+.|. ....+.|...|.+.|++++|+..+++
T Consensus 338 ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Yke 413 (966)
T KOG4626|consen 338 EAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKE 413 (966)
T ss_pred HHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHH
Confidence 9999999999862 2245678889999999999999999999988 34454 66789999999999999999999988
Q ss_pred C-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 378 M-PMKPNE-VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 378 ~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
. +++|+. ..|+.+...|-..|+.+.|.+.+.+++..+|.-..++..|+..|...|+..+|+.-|++..+..
T Consensus 414 alrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 414 ALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 7 889975 4999999999999999999999999999999988999999999999999999999999987754
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.92 E-value=1.2e-20 Score=190.78 Aligned_cols=392 Identities=13% Similarity=0.067 Sum_probs=298.0
Q ss_pred chHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 010496 47 QWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLD 126 (509)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 126 (509)
.+......+.+.|++++|+..|++.++ +.|+...|..+-.++... ++++.|...+...++. .|++..++..+..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l--~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~ 202 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNAL--GDWEKVVEDTTAALEL--DPDYSKALNRRAN 202 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHh--CCHHHHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence 455678889999999999999999987 578888888888888888 9999999999998887 4777999999999
Q ss_pred HHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC-------------------------
Q 010496 127 MYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR------------------------- 178 (509)
Q Consensus 127 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------------- 178 (509)
+|...|++++|+..|..+... +......++..+........+...++.-...
T Consensus 203 a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (615)
T TIGR00990 203 AYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLED 282 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhc
Confidence 999999999999877655321 1111111111111111112222222211110
Q ss_pred ----CH---hHHHHHHHH---HHHcCChHHHHHHHHHHHHcC-CCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 010496 179 ----DA---ISWTALLNG---FVKRGYFEEALECFREMQISG-VEP-DYVTIISVLNACANVGTLGIGLWIHRYVLKQDF 246 (509)
Q Consensus 179 ----~~---~~~~~li~~---~~~~~~~~~A~~~~~~m~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 246 (509)
+. ..+..+... ....+++++|.+.|+.....+ ..| ....+..+...+...|++++|...+++.++..
T Consensus 283 ~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~- 361 (615)
T TIGR00990 283 SNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD- 361 (615)
T ss_pred ccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-
Confidence 00 011111111 122467999999999998764 234 34567778888899999999999999999875
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010496 247 KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGAL 323 (509)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 323 (509)
|.....|..+..++...|++++|...|+++.+ .+..+|..+...+...|++++|+..|++.++.. +.+...+..+.
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la 440 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLG 440 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHH
Confidence 55677889999999999999999999998763 367889999999999999999999999999863 33566777788
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-H-------HHHHHHHHH
Q 010496 324 TACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNE-V-------VLGSLLAAC 394 (509)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~-------~~~~l~~~~ 394 (509)
.++.+.|++++|+..+++..+ ..+.+...++.+...+...|++++|++.|++. .+.|+. . .++..+..+
T Consensus 441 ~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~ 518 (615)
T TIGR00990 441 VTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALF 518 (615)
T ss_pred HHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHH
Confidence 889999999999999999985 33445788999999999999999999999885 444431 1 122222233
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 395 RTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 395 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
...|++++|.++++++++.+|.+...+..++.++.+.|++++|++.|++..+..
T Consensus 519 ~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 519 QWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 446999999999999999999988889999999999999999999999987653
No 12
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.91 E-value=8.1e-20 Score=196.75 Aligned_cols=392 Identities=11% Similarity=0.020 Sum_probs=279.9
Q ss_pred CccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcc---cHHHH------------HHhhcCCCccchhHHHHHHHHH
Q 010496 44 PTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHI---TFITL------------LSGCADFPSQCLFLGAMIHGLV 108 (509)
Q Consensus 44 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~l------------l~~~~~~~~~~~~~a~~~~~~~ 108 (509)
+...+..+...+.+.|++++|+..|++..+. .|+.. .+..+ ...+... ++.+.|...+.++
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~--~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~--g~~~eA~~~~~~A 377 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALAL--DPHSSNRDKWESLLKVNRYWLLIQQGDAALKA--NNLAQAERLYQQA 377 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCccchhHHHHHHHhhhHHHHHHHHHHHHHC--CCHHHHHHHHHHH
Confidence 4556666666677777777777777776653 23221 11111 1122334 6667777777766
Q ss_pred HHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCC------
Q 010496 109 CKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV--K-SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRD------ 179 (509)
Q Consensus 109 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~------ 179 (509)
.+.. |++..++..+..++...|++++|++.|+++.. | +...+..+...|. .++.++|..+++.+....
T Consensus 378 l~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~ 454 (1157)
T PRK11447 378 RQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDD 454 (1157)
T ss_pred HHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHH
Confidence 6663 55566666677777777777777777776653 2 3444555555553 345677777766554321
Q ss_pred ------HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHH
Q 010496 180 ------AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVC 253 (509)
Q Consensus 180 ------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 253 (509)
...+..+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|...++++++.. +.+...+
T Consensus 455 ~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~ 532 (1157)
T PRK11447 455 IERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQV 532 (1157)
T ss_pred HHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHH
Confidence 1234445667778899999999999988853 2346667778888999999999999999988765 5566666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCC----h---------hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010496 254 NTLIDLYSRCGCIEFARQVFQRMHKRT----L---------VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFT 320 (509)
Q Consensus 254 ~~l~~~~~~~g~~~~a~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 320 (509)
..+...+...++.++|...++.+.... . ..+..+...+...|+.++|+.+++. .+.+...+.
T Consensus 533 ~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~ 607 (1157)
T PRK11447 533 YAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDL 607 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHH
Confidence 666667788899999999998876321 1 1123456678889999999998872 244556677
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 010496 321 GALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKG 398 (509)
Q Consensus 321 ~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g 398 (509)
.+...+.+.|++++|+..|+++.+. .+.+...+..++..|...|++++|++.++.. ...|+ ...+..+..++...|
T Consensus 608 ~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g 685 (1157)
T PRK11447 608 TLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALG 685 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCC
Confidence 7888999999999999999999952 3446888999999999999999999999987 45554 556777888899999
Q ss_pred CHHHHHHHHHHHHhcCCCCCc------hHHHHHHHHHHcCCchHHHHHHHHHHh-CCCcc
Q 010496 399 DIILAERLMKYLVDLDPGVDS------NYVLLANMYAAVGKWDGAGKIRRTMKG-RGIQK 451 (509)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~~ 451 (509)
++++|.+++++++...|.++. .+..++..+...|++++|++.|++... .|+.|
T Consensus 686 ~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~ 745 (1157)
T PRK11447 686 DTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITP 745 (1157)
T ss_pred CHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCC
Confidence 999999999999998766432 566778999999999999999998863 45554
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.90 E-value=4.1e-21 Score=184.71 Aligned_cols=291 Identities=13% Similarity=0.100 Sum_probs=201.9
Q ss_pred hCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHccCCHHHH
Q 010496 161 RRGDIESAVRMFDEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISGVEPD---YVTIISVLNACANVGTLGIG 234 (509)
Q Consensus 161 ~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a 234 (509)
..|++++|...|.++... +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+++.|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 344444444444444322 344555566666666666666666666655321111 13455556666666666666
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCC--------hhhHHHHHHHHHhCCChHHHHHHHHH
Q 010496 235 LWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRT--------LVSWNSIIVGFAVNGFVGEALEYFNS 306 (509)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~ 306 (509)
..+|+++.+.. +.+..++..++.++.+.|++++|.+.++.+.+.+ ...+..+...+...|++++|...|++
T Consensus 127 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 127 EELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 66666666543 4455666666666777777777776666664321 11345566777788888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH
Q 010496 307 MQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEV 385 (509)
Q Consensus 307 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~ 385 (509)
+.+.. +.+...+..+...+.+.|++++|.++++++.+. .......++..++.+|...|++++|...++++ ...|+..
T Consensus 206 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 206 ALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD 283 (389)
T ss_pred HHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 88753 224556777888888999999999999998842 21112456788889999999999999999887 5677777
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH---cCCchHHHHHHHHHHhCCCccCCcc
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAA---VGKWDGAGKIRRTMKGRGIQKKPGL 455 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~~~ 455 (509)
.+..++..+.+.|++++|..+++++++..|++. .+..++..+.. .|+.+++..++++|.++++.++|.+
T Consensus 284 ~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 284 LLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 778889999999999999999999999988764 55555655553 5689999999999999999998863
No 14
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.90 E-value=2.8e-19 Score=192.65 Aligned_cols=389 Identities=13% Similarity=0.020 Sum_probs=262.3
Q ss_pred chHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHh-hcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHH
Q 010496 47 QWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSG-CADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALL 125 (509)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 125 (509)
..-.+...+.+.|++++|+..|+.+.+.+ +|+...-...... .... ++.+.|...++.+.+.. |+++.++..+.
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~--g~~~~A~~~L~~ll~~~--P~~~~~~~~LA 188 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLP--AQRPEAINQLQRLNADY--PGNTGLRNTLA 188 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCC--ccHHHHHHHHHHHHHhC--CCCHHHHHHHH
Confidence 34455667889999999999999998753 3332211111122 2233 88899999999999885 77789999999
Q ss_pred HHHHhcCCchHHHHHHHhcCCCCh------H-----------------HHH-----------------------------
Q 010496 126 DMYAKFGRMDLATVVFDAMRVKSS------F-----------------TWN----------------------------- 153 (509)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~~~~~~~------~-----------------~~~----------------------------- 153 (509)
..+...|+.++|++.++++..... . .+.
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp 268 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADP 268 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCc
Confidence 999999999999999988642100 0 000
Q ss_pred -----HHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHhHH------
Q 010496 154 -----AMIDGYMRRGDIESAVRMFDEMPV---RDAISWTALLNGFVKRGYFEEALECFREMQISGVEP-DYVTI------ 218 (509)
Q Consensus 154 -----~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p-~~~~~------ 218 (509)
.....+...|++++|+..|++... .+..++..+..++.+.|++++|+..|++..+..... ....+
T Consensus 269 ~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 269 AFRARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 113346678999999999987753 378889999999999999999999999988753211 11111
Q ss_pred ------HHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHH---
Q 010496 219 ------ISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNS--- 286 (509)
Q Consensus 219 ------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~--- 286 (509)
......+.+.|++++|...|+++++.. +.+...+..+..++...|++++|++.|+++.+. +...+..
T Consensus 349 ~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 349 NRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 122445678899999999999999886 667778888999999999999999999987632 2222221
Q ss_pred ---------------------------------------HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010496 287 ---------------------------------------IIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACS 327 (509)
Q Consensus 287 ---------------------------------------l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 327 (509)
+...+...|++++|++.|++.++... -+...+..+...+.
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLR 506 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 23345567899999999999888632 24566777888899
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH--------------------------------------------HHHH
Q 010496 328 HAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIV--------------------------------------------DLYS 363 (509)
Q Consensus 328 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li--------------------------------------------~~~~ 363 (509)
+.|++++|...++++.+... .+...+..+. ..+.
T Consensus 507 ~~G~~~~A~~~l~~al~~~P--~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~ 584 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKP--NDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLR 584 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHH
Confidence 99999999999998874221 1222222222 2233
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 364 RAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 364 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
..|++++|.++++.- .++...+..+...+.+.|++++|+..|+++++..|.++.++..++.+|...|++++|++.+++
T Consensus 585 ~~G~~~eA~~~l~~~--p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ 662 (1157)
T PRK11447 585 DSGKEAEAEALLRQQ--PPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK 662 (1157)
T ss_pred HCCCHHHHHHHHHhC--CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 334444444444321 123334455555666666666666666666666666666666666666666666666666665
Q ss_pred HHh
Q 010496 444 MKG 446 (509)
Q Consensus 444 m~~ 446 (509)
..+
T Consensus 663 ll~ 665 (1157)
T PRK11447 663 LPA 665 (1157)
T ss_pred Hhc
Confidence 544
No 15
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.88 E-value=7.1e-20 Score=176.11 Aligned_cols=287 Identities=14% Similarity=0.101 Sum_probs=224.4
Q ss_pred HHHHHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC-------CHhHHHHHHHHHHHc
Q 010496 124 LLDMYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR-------DAISWTALLNGFVKR 193 (509)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~ 193 (509)
....+...|++++|+..|+++... +..++..+...+...|++++|..+++.+... ....+..++..|.+.
T Consensus 41 ~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 41 KGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 344566777888888888877643 3456777777778888888888887766532 124577788888899
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc----HhHHHHHHHHHHhcCCHHHH
Q 010496 194 GYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDN----VKVCNTLIDLYSRCGCIEFA 269 (509)
Q Consensus 194 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a 269 (509)
|++++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..+. ...+..++..+.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999888753 44677888888888999999999999998887652221 22456677888899999999
Q ss_pred HHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 010496 270 RQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIY 346 (509)
Q Consensus 270 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 346 (509)
...|+++.+ .+...+..+...+.+.|++++|.++++++...+......++..++.+|...|++++|...++++.+.
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 999998764 2456778888899999999999999999987633323456788899999999999999999999842
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcC
Q 010496 347 RVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEVVLGSLLAACRT---KGDIILAERLMKYLVDLD 414 (509)
Q Consensus 347 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~ 414 (509)
.|+...+..++..+.+.|++++|..+++++ ...|+...+..++..+.. .|+.+++..+++++.+..
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 466666788999999999999999999876 677999999988877664 558899999999888744
No 16
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=1.9e-18 Score=174.28 Aligned_cols=326 Identities=11% Similarity=-0.023 Sum_probs=228.9
Q ss_pred HHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC--C-ChHHHHHHHHHH
Q 010496 83 FITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV--K-SSFTWNAMIDGY 159 (509)
Q Consensus 83 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~ 159 (509)
...++..+.+. |+...|..++....... |++...+..++.+....|++++|+..|+++.. | +...+..+...+
T Consensus 45 ~~~~~~~~~~~--g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 45 IILFAIACLRK--DETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred HHHHHHHHHhc--CCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 33344444555 77777777777777764 55566677777777778888888888877753 2 456677777777
Q ss_pred HhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHH
Q 010496 160 MRRGDIESAVRMFDEMPV---RDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLW 236 (509)
Q Consensus 160 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~ 236 (509)
.+.|++++|.+.|+.... .+...+..+...+...|++++|...++.+.... +.+...+..+ ..+...|++++|..
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-P~~~~a~~~~-~~l~~~g~~~eA~~ 198 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-PPRGDMIATC-LSFLNKSRLPEDHD 198 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-CCCHHHHHHH-HHHHHcCCHHHHHH
Confidence 788888888887776643 256677777888888888888888887776543 2222333222 34677788888888
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHH----HHHHHHHHHH
Q 010496 237 IHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGE----ALEYFNSMQK 309 (509)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~----A~~~~~~m~~ 309 (509)
.++.+++....++......+..++...|++++|...|+++.. .+...+..+...+...|++++ |+..|++...
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 888877664333444455556777788888888888887653 245667777788888888775 7888888887
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH-H
Q 010496 310 EGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEVV-L 387 (509)
Q Consensus 310 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~ 387 (509)
.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|...++++ ...|+... +
T Consensus 279 l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~ 355 (656)
T PRK15174 279 FN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWN 355 (656)
T ss_pred hC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHH
Confidence 52 234567777888888888888888888888842 2334566777888888888888888888876 45565433 3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010496 388 GSLLAACRTKGDIILAERLMKYLVDLDPGV 417 (509)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 417 (509)
..+..++...|+.++|...|+++++..|++
T Consensus 356 ~~~a~al~~~G~~deA~~~l~~al~~~P~~ 385 (656)
T PRK15174 356 RYAAAALLQAGKTSEAESVFEHYIQARASH 385 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhChhh
Confidence 345667788888888888888888888874
No 17
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.87 E-value=3.6e-18 Score=172.33 Aligned_cols=326 Identities=8% Similarity=-0.045 Sum_probs=262.7
Q ss_pred chHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 010496 47 QWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLD 126 (509)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 126 (509)
-.-.++..+.+.|++++|+.+++........+ ...+..+..+.... |+.+.|...++.+.+.. |++...+..+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~--g~~~~A~~~l~~~l~~~--P~~~~a~~~la~ 118 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLAS--SQPDAVLQVVNKLLAVN--VCQPEDVLLVAS 118 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhc--CCHHHHHHHHHHHHHhC--CCChHHHHHHHH
Confidence 34456788899999999999999998864332 33344444444555 99999999999999885 888999999999
Q ss_pred HHHhcCCchHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCCHHHHHHHHhcCCC--C-CHhHHHHHHHHHHHcCChHHHH
Q 010496 127 MYAKFGRMDLATVVFDAMRV--K-SSFTWNAMIDGYMRRGDIESAVRMFDEMPV--R-DAISWTALLNGFVKRGYFEEAL 200 (509)
Q Consensus 127 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~ 200 (509)
.+.+.|++++|+..++++.. | +...+..+...+...|++++|...++.+.. | +...+..+ ..+...|++++|.
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHcCCHHHHH
Confidence 99999999999999999874 3 567888999999999999999999986632 2 44444444 3478899999999
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH----HHHHHHhc
Q 010496 201 ECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEF----ARQVFQRM 276 (509)
Q Consensus 201 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~ 276 (509)
..++.+......++...+..+..++...|++++|...++++.+.. +.+...+..+..+|...|++++ |...|+++
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 999998876433444555566778899999999999999999886 6678889999999999999986 78999887
Q ss_pred cC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH-
Q 010496 277 HK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRI- 352 (509)
Q Consensus 277 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~- 352 (509)
.+ .+...+..+...+...|++++|+..+++..... +.+...+..+..++.+.|++++|...++++.+. .|+.
T Consensus 277 l~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~---~P~~~ 352 (656)
T PRK15174 277 LQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE---KGVTS 352 (656)
T ss_pred HhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---Cccch
Confidence 63 356788999999999999999999999999863 224556777888999999999999999999843 3443
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC
Q 010496 353 EHYGCIVDLYSRAGRLEDALNVVENM-PMKPN 383 (509)
Q Consensus 353 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~ 383 (509)
..+..+..++...|++++|...|++. ...|+
T Consensus 353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 353 KWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 33444677889999999999999986 44443
No 18
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.87 E-value=5.6e-18 Score=174.63 Aligned_cols=391 Identities=11% Similarity=0.011 Sum_probs=299.2
Q ss_pred hHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 010496 48 WTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDM 127 (509)
Q Consensus 48 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (509)
..-.+......|+.++|++++.+..... +.+...+..+...+... ++.+.|..++...++. .|.++..+..++.+
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~--g~~~~A~~~~~~al~~--~P~~~~a~~~la~~ 92 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNL--KQWQNSLTLWQKALSL--EPQNDDYQRGLILT 92 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 3445667778999999999999998622 33444577777777777 9999999999999887 47778889999999
Q ss_pred HHhcCCchHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCChHHHHH
Q 010496 128 YAKFGRMDLATVVFDAMRV--K-SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR---DAISWTALLNGFVKRGYFEEALE 201 (509)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~ 201 (509)
+...|++++|+..++++.. | +.. +..+..++...|+.++|+..++++... +...+..+..++...+..++|++
T Consensus 93 l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~ 171 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALG 171 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHH
Confidence 9999999999999999864 3 556 888889999999999999999987643 66777788889999999999999
Q ss_pred HHHHHHHcCCCCCH------hHHHHHHHHHH-----ccCCH---HHHHHHHHHHHHc-CCCCcHh-HH----HHHHHHHH
Q 010496 202 CFREMQISGVEPDY------VTIISVLNACA-----NVGTL---GIGLWIHRYVLKQ-DFKDNVK-VC----NTLIDLYS 261 (509)
Q Consensus 202 ~~~~m~~~~~~p~~------~~~~~l~~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~ 261 (509)
.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+.. .+ ...+.++.
T Consensus 172 ~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 172 AIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 9887654 3331 11122222222 22234 7788888888865 1122221 11 11133456
Q ss_pred hcCCHHHHHHHHHhccCCC---h-hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHH
Q 010496 262 RCGCIEFARQVFQRMHKRT---L-VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKP---DGVSFTGALTACSHAGLIED 334 (509)
Q Consensus 262 ~~g~~~~a~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~~~~~~ 334 (509)
..|++++|+..|+.+.+.+ + .....+..+|...|++++|+..|+++....... .......+..++...|++++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~e 328 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPG 328 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHH
Confidence 7799999999999998642 2 122335778999999999999999988653211 13445666778899999999
Q ss_pred HHHHHHHhHHhcC----------CCCC---HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 010496 335 GLRYFDIMKKIYR----------VSPR---IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGD 399 (509)
Q Consensus 335 a~~~~~~~~~~~~----------~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~ 399 (509)
|...++.+.+... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..++..+...|+
T Consensus 329 A~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~ 408 (765)
T PRK10049 329 ALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGW 408 (765)
T ss_pred HHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCC
Confidence 9999999985321 1122 234567788899999999999999997 4445 56788889999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 400 IILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 400 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+++|++.++++++..|++...+..++..+...|++++|..+++++++.
T Consensus 409 ~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 409 PRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999875
No 19
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.84 E-value=5.1e-17 Score=167.55 Aligned_cols=368 Identities=9% Similarity=-0.051 Sum_probs=281.8
Q ss_pred CCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCC-cccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHH
Q 010496 43 NPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPN-HITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVG 121 (509)
Q Consensus 43 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (509)
.+...+..+...+...|++++|+.+|++..+. .|+ ...+..+...+... ++.+.|...++.+.+. .|++.. +
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~--g~~~eA~~~l~~~l~~--~P~~~~-~ 119 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADA--GQYDEALVKAKQLVSG--APDKAN-L 119 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHh--CCCCHH-H
Confidence 34446899999999999999999999999884 454 45555666667777 9999999999999988 477788 9
Q ss_pred HHHHHHHHhcCCchHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHh--------HHHHHHHHH
Q 010496 122 TALLDMYAKFGRMDLATVVFDAMRV--K-SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAI--------SWTALLNGF 190 (509)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--------~~~~li~~~ 190 (509)
..+..++...|+.++|+..++++.. | +...+..+..++...+..++|+..++.... ++. ....+++..
T Consensus 120 ~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~ 198 (765)
T PRK10049 120 LALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLS 198 (765)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999874 3 556677788888899999999999998776 211 222233333
Q ss_pred HH-----cCCh---HHHHHHHHHHHHc-CCCCCHh-HHH----HHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHH
Q 010496 191 VK-----RGYF---EEALECFREMQIS-GVEPDYV-TII----SVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTL 256 (509)
Q Consensus 191 ~~-----~~~~---~~A~~~~~~m~~~-~~~p~~~-~~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 256 (509)
.. .+++ ++|++.++.+.+. ...|+.. .+. ..+..+...|++++|+..|+.+.+.+.+........+
T Consensus 199 ~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~l 278 (765)
T PRK10049 199 FMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWV 278 (765)
T ss_pred cccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHH
Confidence 22 2234 7788899988864 1233321 111 1134456779999999999999987632112223335
Q ss_pred HHHHHhcCCHHHHHHHHHhccCCC-------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-----------CCCH--
Q 010496 257 IDLYSRCGCIEFARQVFQRMHKRT-------LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGF-----------KPDG-- 316 (509)
Q Consensus 257 ~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-----------~p~~-- 316 (509)
..+|...|++++|+..|+++.+.+ ...+..+..++...|++++|...++.+..... .|+.
T Consensus 279 a~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~ 358 (765)
T PRK10049 279 ASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDW 358 (765)
T ss_pred HHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchH
Confidence 789999999999999999986432 23455667788999999999999999987521 1332
Q ss_pred -HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH
Q 010496 317 -VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAA 393 (509)
Q Consensus 317 -~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~ 393 (509)
..+..+...+...|+.++|+..++++.. ..+.+...+..+...+...|++++|++.+++. ...|+ ...+..++..
T Consensus 359 ~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~ 436 (765)
T PRK10049 359 LQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWT 436 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 2445667788899999999999999985 33456888999999999999999999999987 56776 5577777778
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCch
Q 010496 394 CRTKGDIILAERLMKYLVDLDPGVDSN 420 (509)
Q Consensus 394 ~~~~g~~~~a~~~~~~~~~~~~~~~~~ 420 (509)
+...|++++|+.+++++++..|+++.+
T Consensus 437 al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 437 ALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 999999999999999999999998743
No 20
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=4.8e-16 Score=160.71 Aligned_cols=393 Identities=10% Similarity=0.038 Sum_probs=269.9
Q ss_pred CCCCCccchHHH-HHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcC-CCccchhHHHHHHHHHHHhCCCCCc
Q 010496 40 STVNPTVQWTSS-ISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCAD-FPSQCLFLGAMIHGLVCKLGLDRNN 117 (509)
Q Consensus 40 ~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~ 117 (509)
.+.|........ ...|.+.|++++|+.++.++.+.+.. +..-...+-..+.. . ++ +.+..++.. .+. .+
T Consensus 176 ~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l--~~-~~a~al~~~----~lk-~d 246 (987)
T PRK09782 176 AASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQ--LD-DRLLALQSQ----GIF-TD 246 (987)
T ss_pred CCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhh--CH-HHHHHHhch----hcc-cC
Confidence 344444444444 88999999999999999999997532 33334445455544 2 33 555555332 222 45
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCC-----CChHHH------------------------------HHHHHHHHhC
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRV-----KSSFTW------------------------------NAMIDGYMRR 162 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~------------------------------~~l~~~~~~~ 162 (509)
+.++..++..|.+.|+.++|.++++++.. +...+| -.++..+.+.
T Consensus 247 ~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (987)
T PRK09782 247 PQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKE 326 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhc
Confidence 88999999999999999999999999862 111111 1124445555
Q ss_pred CCHHHHHHHHh---------------------------------------------------------------cCCC-C
Q 010496 163 GDIESAVRMFD---------------------------------------------------------------EMPV-R 178 (509)
Q Consensus 163 ~~~~~A~~~~~---------------------------------------------------------------~~~~-~ 178 (509)
++++.++++.. .... +
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~ 406 (987)
T PRK09782 327 GQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQ 406 (987)
T ss_pred cHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCC
Confidence 55555555433 2211 0
Q ss_pred -----CHhHHHHHHHHHHHcCC---hHHHHHH----------------------HHHHHHc-CC-CC--CHhHHHHHHHH
Q 010496 179 -----DAISWTALLNGFVKRGY---FEEALEC----------------------FREMQIS-GV-EP--DYVTIISVLNA 224 (509)
Q Consensus 179 -----~~~~~~~li~~~~~~~~---~~~A~~~----------------------~~~m~~~-~~-~p--~~~~~~~l~~~ 224 (509)
+.....-++..|.+.+. ..++..+ ....... +. ++ +...|..+..+
T Consensus 407 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~ 486 (987)
T PRK09782 407 GDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKC 486 (987)
T ss_pred cccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHH
Confidence 11222344444444443 2222222 1111110 11 23 55667777777
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHhCCChHHHHH
Q 010496 225 CANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALE 302 (509)
Q Consensus 225 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~ 302 (509)
+.. ++.++|...+.+..... |+......+...+...|++++|...|+++.. ++...+..+..++.+.|+.++|..
T Consensus 487 l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~ 563 (987)
T PRK09782 487 YRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDR 563 (987)
T ss_pred HHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHH
Confidence 766 78888999888877664 4544444455666789999999999988763 344556677788889999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCC
Q 010496 303 YFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMK 381 (509)
Q Consensus 303 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~ 381 (509)
.+++..+.. +.+...+..+...+...|++++|...+++..+ ..|+...+..+...+.+.|++++|+..+++. ...
T Consensus 564 ~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~ 639 (987)
T PRK09782 564 WLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE 639 (987)
T ss_pred HHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999998863 22333333344445566999999999999983 3467888889999999999999999999887 566
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 382 PN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 382 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
|+ ...+..+..++...|++++|+..++++++..|.++..+..++.++...|++++|...+++..+..
T Consensus 640 Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 640 PNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 64 55778888889999999999999999999999999999999999999999999999999987654
No 21
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.83 E-value=6.6e-16 Score=159.69 Aligned_cols=195 Identities=13% Similarity=0.073 Sum_probs=159.4
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHH--HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010496 249 NVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSI--IVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTAC 326 (509)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 326 (509)
+...|..+..++.. ++.++|...+.+.....+..+..+ ...+...|++++|...|+++... +|+...+..+..++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 67788888888887 889999998877664333334444 44456899999999999998764 45555566777888
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010496 327 SHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEVVLGSLLAACRTKGDIILAER 405 (509)
Q Consensus 327 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~ 405 (509)
.+.|+.++|...++...+. . +.....+..+...+.+.|++++|...+++. ...|+...+..+..++.+.|++++|..
T Consensus 553 l~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999842 2 333444444445555679999999999887 678888899999999999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 406 LMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
.++++++..|+++..+..++.++...|++++|+.++++..+..
T Consensus 631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~ 673 (987)
T PRK09782 631 DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL 673 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999988753
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.82 E-value=3e-16 Score=159.00 Aligned_cols=368 Identities=13% Similarity=0.070 Sum_probs=268.2
Q ss_pred CCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCC-CcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCch
Q 010496 40 STVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNP-NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNV 118 (509)
Q Consensus 40 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 118 (509)
...|+...|..+..+|.+.|++++|+..++..++. .| +...|..+-.++... |+++.|...+..+...+...+ .
T Consensus 155 ~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~~~l--g~~~eA~~~~~~~~~~~~~~~-~ 229 (615)
T TIGR00990 155 ECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAYDGL--GKYADALLDLTASCIIDGFRN-E 229 (615)
T ss_pred hcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCCCcc-H
Confidence 34577888999999999999999999999999985 45 455677777778888 999999887776655532111 2
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcCC-----------------------------CCh---HHHHHHHHH---HHhCC
Q 010496 119 MVGTALLDMYAKFGRMDLATVVFDAMRV-----------------------------KSS---FTWNAMIDG---YMRRG 163 (509)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------------------------~~~---~~~~~l~~~---~~~~~ 163 (509)
.....+...+ .......+...++.-.. .+. ..+..+... ....+
T Consensus 230 ~~~~~~~~~l-~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~ 308 (615)
T TIGR00990 230 QSAQAVERLL-KKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADE 308 (615)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhh
Confidence 1111111111 11111122222211110 000 001111111 12246
Q ss_pred CHHHHHHHHhcCCCC------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccCCHHHHHH
Q 010496 164 DIESAVRMFDEMPVR------DAISWTALLNGFVKRGYFEEALECFREMQISGVEPD-YVTIISVLNACANVGTLGIGLW 236 (509)
Q Consensus 164 ~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~ 236 (509)
++++|.+.|+..... ....|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...|++++|..
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~ 386 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELGDPDKAEE 386 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 789999999876532 4567888899999999999999999999885 454 6678888899999999999999
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 010496 237 IHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFK 313 (509)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 313 (509)
.++++++.. +.+..++..+..++...|++++|...|++..+. +...+..+..++.+.|++++|+..|++.+.. .+
T Consensus 387 ~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P 464 (615)
T TIGR00990 387 DFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FP 464 (615)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CC
Confidence 999999886 667889999999999999999999999998743 5567888888999999999999999999875 23
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC-CC---CH-HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHH
Q 010496 314 PDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRV-SP---RI-EHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVV 386 (509)
Q Consensus 314 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~-~~---~~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~ 386 (509)
-+...+..+..++...|++++|+..|++..+...- .+ +. ..++.....+...|++++|.+++++. ...|+ ...
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a 544 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIA 544 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 35678888899999999999999999998842111 01 11 11222233344579999999999885 56665 447
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010496 387 LGSLLAACRTKGDIILAERLMKYLVDLDPGV 417 (509)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 417 (509)
+..+...+...|++++|.+.|+++.++.+..
T Consensus 545 ~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 545 VATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 8889999999999999999999999987653
No 23
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=1.2e-15 Score=154.72 Aligned_cols=394 Identities=12% Similarity=0.000 Sum_probs=283.9
Q ss_pred chHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcc-cHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHH
Q 010496 47 QWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHI-TFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALL 125 (509)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 125 (509)
+-...+-...+.|+++.|+..|++..+. .|+.. ....++..+... |+.+.|...++... ...|........++
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~dll~l~~~~--G~~~~A~~~~eka~--~p~n~~~~~llalA 109 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKA--GPLQSGQVDDWLQIAGWA--GRDQEVIDVYERYQ--SSMNISSRGLASAA 109 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhh--CccchhhHHHHHHHHHHc--CCcHHHHHHHHHhc--cCCCCCHHHHHHHH
Confidence 3344455568899999999999999874 56642 222666677777 99999999988887 21222234444447
Q ss_pred HHHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHH--HcCChHHHH
Q 010496 126 DMYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFV--KRGYFEEAL 200 (509)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~A~ 200 (509)
..|...|++++|+++|+++.+. ++..+..++..+...++.++|++.++.+.+.++.....+..++. ..++..+|+
T Consensus 110 ~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 110 RAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHH
Confidence 7899999999999999999753 56677788888999999999999999998765443333444444 456666699
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHH-------------------------------------------
Q 010496 201 ECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWI------------------------------------------- 237 (509)
Q Consensus 201 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~------------------------------------------- 237 (509)
+.++++.+.. +-+...+..+..++.+.|-...|.++
T Consensus 190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 9999998863 33455555555555555544333332
Q ss_pred -----HHHHHHc--CCCCcHhH----HHHHHHHHHhcCCHHHHHHHHHhccCC----ChhhHHHHHHHHHhCCChHHHHH
Q 010496 238 -----HRYVLKQ--DFKDNVKV----CNTLIDLYSRCGCIEFARQVFQRMHKR----TLVSWNSIIVGFAVNGFVGEALE 302 (509)
Q Consensus 238 -----~~~~~~~--~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~ 302 (509)
++.+... ..|+.... ..-.+-++...|++.++++.|+.+... ...+-..+..+|...+++++|+.
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 2222221 11222111 123345667788899999999998843 33466778889999999999999
Q ss_pred HHHHHHHCC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC----------CCC---HHHHHHHHHHHHh
Q 010496 303 YFNSMQKEG-----FKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRV----------SPR---IEHYGCIVDLYSR 364 (509)
Q Consensus 303 ~~~~m~~~g-----~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~----------~~~---~~~~~~li~~~~~ 364 (509)
+|+.+.... ..++......|.-++...+++++|..+++.+.+.... .|+ ...+..++..+.-
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 999987643 1223444577888999999999999999999852210 122 2334556777888
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 010496 365 AGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRR 442 (509)
Q Consensus 365 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 442 (509)
.|+..+|++.++++ ...| |......+...+...|.+.+|++.++.+....|++..+....+.++...|+|.+|..+.+
T Consensus 429 ~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~ 508 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTD 508 (822)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999988 4445 777888889999999999999999999999999988889999999999999999999988
Q ss_pred HHHhC
Q 010496 443 TMKGR 447 (509)
Q Consensus 443 ~m~~~ 447 (509)
.+.+.
T Consensus 509 ~l~~~ 513 (822)
T PRK14574 509 DVISR 513 (822)
T ss_pred HHHhh
Confidence 87664
No 24
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.79 E-value=5.3e-15 Score=149.96 Aligned_cols=347 Identities=12% Similarity=0.047 Sum_probs=275.5
Q ss_pred cchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCCCh-HHHHHH--HHHHHhCCCHHHHHHHH
Q 010496 96 QCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSS-FTWNAM--IDGYMRRGDIESAVRMF 172 (509)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~l--~~~~~~~~~~~~A~~~~ 172 (509)
|+...|...+.+..+.. |.+......++..+...|+.++|+..+++...++. ..+..+ ...+...|++++|+++|
T Consensus 48 Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely 125 (822)
T PRK14574 48 GDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALW 125 (822)
T ss_pred CCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999998885 65432333888899999999999999999997633 333334 55788899999999999
Q ss_pred hcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 010496 173 DEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDN 249 (509)
Q Consensus 173 ~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 249 (509)
+.+... ++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+|++.++++.+.. |.+
T Consensus 126 ~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n 202 (822)
T PRK14574 126 QSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTS 202 (822)
T ss_pred HHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCC
Confidence 988643 6777888889999999999999999999885 6676666555555555677767999999999986 777
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccC---------------------------------------------------
Q 010496 250 VKVCNTLIDLYSRCGCIEFARQVFQRMHK--------------------------------------------------- 278 (509)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------------------------------------------------- 278 (509)
...+..+..++.+.|-...|.++..+-..
T Consensus 203 ~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~ 282 (822)
T PRK14574 203 EEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWG 282 (822)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence 88888888888888877666666553321
Q ss_pred CCh---h----hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC----
Q 010496 279 RTL---V----SWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYR---- 347 (509)
Q Consensus 279 ~~~---~----~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---- 347 (509)
+++ . ..--.+-++...|++.++++.|+.+...|.+....+-..+..+|...+.+++|+.+++.+....+
T Consensus 283 ~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~ 362 (822)
T PRK14574 283 KDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFR 362 (822)
T ss_pred CCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccC
Confidence 011 0 11123446777899999999999999988765667888999999999999999999999975332
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCC-C-------------C--CH-HHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010496 348 VSPRIEHYGCIVDLYSRAGRLEDALNVVENMPM-K-------------P--NE-VVLGSLLAACRTKGDIILAERLMKYL 410 (509)
Q Consensus 348 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-------------p--~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 410 (509)
..++......|.-+|...+++++|..+++.+.- . | |- ..+..++..+...|+..+|++.++++
T Consensus 363 ~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l 442 (822)
T PRK14574 363 NSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDL 442 (822)
T ss_pred CCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 223454467889999999999999999998831 1 2 22 24445567788999999999999999
Q ss_pred HhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 411 VDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 411 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
....|.+......++..+...|++.+|.+.++.....
T Consensus 443 ~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 443 SSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999776654
No 25
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.75 E-value=7.2e-15 Score=143.01 Aligned_cols=402 Identities=13% Similarity=0.058 Sum_probs=260.8
Q ss_pred CCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCC--CCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCc
Q 010496 40 STVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTN--PNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNN 117 (509)
Q Consensus 40 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 117 (509)
...-|++..+.|..-|.-.|+++.+..+...+...... .-..+|-.+.+++-.. |+++.|...|-+..+.. +++
T Consensus 265 ~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~--Gd~ekA~~yY~~s~k~~--~d~ 340 (1018)
T KOG2002|consen 265 ENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ--GDFEKAFKYYMESLKAD--NDN 340 (1018)
T ss_pred hcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHccC--CCC
Confidence 44567778888888888888888888888888765411 1234566677777666 88888888887766664 554
Q ss_pred -hHHHHHHHHHHHhcCCchHHHHHHHhcCC--C-ChHHHHHHHHHHHhCC----CHHHHHHHHhcCCCC---CHhHHHHH
Q 010496 118 -VMVGTALLDMYAKFGRMDLATVVFDAMRV--K-SSFTWNAMIDGYMRRG----DIESAVRMFDEMPVR---DAISWTAL 186 (509)
Q Consensus 118 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~----~~~~A~~~~~~~~~~---~~~~~~~l 186 (509)
...+..|..+|.+.|+.+.+...|+.+.. | +..+...|...|+..+ ..+.|..++.....+ |..+|-.+
T Consensus 341 ~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~l 420 (1018)
T KOG2002|consen 341 FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLEL 420 (1018)
T ss_pred ccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 56667788888888888888888888763 2 4455555556665553 345555555554433 44455555
Q ss_pred HHHHHHcCChHHHHHHHHHH----HHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCCc------HhHH
Q 010496 187 LNGFVKRGYFEEALECFREM----QISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQ---DFKDN------VKVC 253 (509)
Q Consensus 187 i~~~~~~~~~~~A~~~~~~m----~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~------~~~~ 253 (509)
...+.....+.. +.+|... ...+..+.....+.+.......|.+..|...|...... ...++ ..+-
T Consensus 421 aql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~ 499 (1018)
T KOG2002|consen 421 AQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLK 499 (1018)
T ss_pred HHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHH
Confidence 444444433322 4444332 22333344455555555555555555555555554433 01111 1122
Q ss_pred HHHHHHHHhcCCHH----------------------------------HHHHHHHhcc---CCChhhHHHHHHHHHhCCC
Q 010496 254 NTLIDLYSRCGCIE----------------------------------FARQVFQRMH---KRTLVSWNSIIVGFAVNGF 296 (509)
Q Consensus 254 ~~l~~~~~~~g~~~----------------------------------~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~ 296 (509)
..+..++-..++++ +|...+.... +.++..+..+...+.....
T Consensus 500 YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~ 579 (1018)
T KOG2002|consen 500 YNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSE 579 (1018)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhh
Confidence 22333333344444 4444444433 2355666666667777777
Q ss_pred hHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhc------------cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 010496 297 VGEALEYFNSMQKE-GFKPDGVSFTGALTACSH------------AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYS 363 (509)
Q Consensus 297 ~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 363 (509)
+..|.+-|..+... ...+|..+...|.+.|.+ .+..++|+++|.++.+ ..+.|...-+.+.-.++
T Consensus 580 ~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA 657 (1018)
T KOG2002|consen 580 WKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLA 657 (1018)
T ss_pred hcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhh
Confidence 77777766655543 123566666666665542 2346788888888884 34557778888888999
Q ss_pred hcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C-CCchHHHHHHHHHHcCCchHHHH
Q 010496 364 RAGRLEDALNVVENMP--MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDP-G-VDSNYVLLANMYAAVGKWDGAGK 439 (509)
Q Consensus 364 ~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~ 439 (509)
..|++.+|..+|.... ......+|..+..+|...|++..|+++|+...+... . ++.+...|++++.+.|++.+|.+
T Consensus 658 ~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 658 EKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred hccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 9999999999998873 223456888899999999999999999999887543 3 56679999999999999999999
Q ss_pred HHHHHHhCC
Q 010496 440 IRRTMKGRG 448 (509)
Q Consensus 440 ~~~~m~~~~ 448 (509)
.+.......
T Consensus 738 ~ll~a~~~~ 746 (1018)
T KOG2002|consen 738 ALLKARHLA 746 (1018)
T ss_pred HHHHHHHhC
Confidence 988876654
No 26
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.73 E-value=9e-15 Score=142.35 Aligned_cols=400 Identities=13% Similarity=0.037 Sum_probs=260.4
Q ss_pred CCccchHHHHHHHHcCC---ChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCC-CCch
Q 010496 43 NPTVQWTSSISRHCRSG---RIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLD-RNNV 118 (509)
Q Consensus 43 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~ 118 (509)
-++.++-.|.-.-.... .+..++.++...-... .-++...+.|-..+... ++...+..+...+...... +--.
T Consensus 231 ~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK--~dy~~v~~la~~ai~~t~~~~~~a 307 (1018)
T KOG2002|consen 231 TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFK--KDYERVWHLAEHAIKNTENKSIKA 307 (1018)
T ss_pred hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhc--ccHHHHHHHHHHHHHhhhhhHHHH
Confidence 35555554444433333 3566777776665532 23455566666666666 9999999999888877522 2224
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcCCC--C--hHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHH
Q 010496 119 MVGTALLDMYAKFGRMDLATVVFDAMRVK--S--SFTWNAMIDGYMRRGDIESAVRMFDEMPVR---DAISWTALLNGFV 191 (509)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~ 191 (509)
..|..+.++|-..|++++|.+.|-+..+. + ...+--+...|.+.|+++.+...|+.+... +..+...|...|.
T Consensus 308 es~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya 387 (1018)
T KOG2002|consen 308 ESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYA 387 (1018)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHH
Confidence 56889999999999999999999988753 2 334556889999999999999999988643 6778888888888
Q ss_pred HcC----ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHH----HcCCCCcHhHHHHHHHHHHhc
Q 010496 192 KRG----YFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVL----KQDFKDNVKVCNTLIDLYSRC 263 (509)
Q Consensus 192 ~~~----~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~ 263 (509)
..+ ..+.|..++.+..+.- +.|...|..+...+...+-+.. +.+|..+. ..+.++.....|.+...+...
T Consensus 388 ~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~ 465 (1018)
T KOG2002|consen 388 HSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRL 465 (1018)
T ss_pred hhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHh
Confidence 775 4577777777777653 4467788777777766554444 66666544 455567889999999999999
Q ss_pred CCHHHHHHHHHhccCC-------Ch------hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhcc
Q 010496 264 GCIEFARQVFQRMHKR-------TL------VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGV-SFTGALTACSHA 329 (509)
Q Consensus 264 g~~~~a~~~~~~~~~~-------~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~ 329 (509)
|++.+|...|...... |. .+--.+...+-..++++.|.+.|..+++. .|.-. .|..++......
T Consensus 466 g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k 543 (1018)
T KOG2002|consen 466 GNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDK 543 (1018)
T ss_pred cChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhc
Confidence 9999999999887532 22 11222344455566777777777777764 33332 333333222233
Q ss_pred CCHHHHHHHHHHhHHhcCC----------------------------------CCCHHHHHHHHHHHHh-----------
Q 010496 330 GLIEDGLRYFDIMKKIYRV----------------------------------SPRIEHYGCIVDLYSR----------- 364 (509)
Q Consensus 330 ~~~~~a~~~~~~~~~~~~~----------------------------------~~~~~~~~~li~~~~~----------- 364 (509)
++..+|...++........ .+|..+.-.|...|.+
T Consensus 544 ~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek 623 (1018)
T KOG2002|consen 544 NNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEK 623 (1018)
T ss_pred cCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHH
Confidence 4455555555544431111 1233333333332221
Q ss_pred -cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 010496 365 -AGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIR 441 (509)
Q Consensus 365 -~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 441 (509)
.+..++|+++|.+. ...| |.+.-+.+...++..|++.+|..+|.+..+...+...+|..++.+|...|+|-.|+++|
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 12345666666554 4444 55566666666777777777777777777766666667777777777777777777777
Q ss_pred HHHHhCCC
Q 010496 442 RTMKGRGI 449 (509)
Q Consensus 442 ~~m~~~~~ 449 (509)
+...++..
T Consensus 704 e~~lkkf~ 711 (1018)
T KOG2002|consen 704 ENCLKKFY 711 (1018)
T ss_pred HHHHHHhc
Confidence 77666544
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.71 E-value=1.4e-12 Score=116.04 Aligned_cols=406 Identities=14% Similarity=0.107 Sum_probs=274.7
Q ss_pred CccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHH-HHHHHHHHhC----------
Q 010496 44 PTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGA-MIHGLVCKLG---------- 112 (509)
Q Consensus 44 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~-~~~~~~~~~~---------- 112 (509)
.|.+=|+|+.. ..+|....+.-+|++|.+.|+..+...-..|+....-....+...+. +.|-.|...|
T Consensus 115 ~V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G 193 (625)
T KOG4422|consen 115 QVETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSG 193 (625)
T ss_pred hhcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccc
Confidence 34455665554 56788999999999999999887777666666543222112222111 1111111111
Q ss_pred --------CCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCC----ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCH
Q 010496 113 --------LDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVK----SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDA 180 (509)
Q Consensus 113 --------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 180 (509)
..|..+.++..+|.++|+.-..+.|.+++++.... +..+||.+|.+-.-..+-+-.-++...-..||.
T Consensus 194 ~vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl 273 (625)
T KOG4422|consen 194 AVADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNL 273 (625)
T ss_pred cHHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCch
Confidence 23556888999999999999999999999887643 677888888765544443333333444456799
Q ss_pred hHHHHHHHHHHHcCChHH----HHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHH-HHHHHHHHHH----cCC----C
Q 010496 181 ISWTALLNGFVKRGYFEE----ALECFREMQISGVEPDYVTIISVLNACANVGTLGI-GLWIHRYVLK----QDF----K 247 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~----A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~----~ 247 (509)
.|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..++..+++.++..+ +..+..++.. ..+ +
T Consensus 274 ~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p 353 (625)
T KOG4422|consen 274 FTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITP 353 (625)
T ss_pred HhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCC
Confidence 999999999999997764 56678888999999999999999998888888754 3334444332 222 3
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-----------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH
Q 010496 248 DNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR-----------TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDG 316 (509)
Q Consensus 248 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~ 316 (509)
.+...|...+..|.+..+.+-|..+-.-+... ...-|..+..+.|+....+.....|+.|+-.-+-|+.
T Consensus 354 ~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~ 433 (625)
T KOG4422|consen 354 TDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHS 433 (625)
T ss_pred chhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCc
Confidence 34555677778888888888887776554421 1234666777888888999999999999988888999
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC-Ch--------HH-----HHHHHHh-----
Q 010496 317 VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAG-RL--------ED-----ALNVVEN----- 377 (509)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~--------~~-----A~~~~~~----- 377 (509)
.+...++++..-.|.++-.-++|..+. .+|..-+...-..+...+++.. .. .. |..+++.
T Consensus 434 ~~m~~~lrA~~v~~~~e~ipRiw~D~~-~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~ 512 (625)
T KOG4422|consen 434 QTMIHLLRALDVANRLEVIPRIWKDSK-EYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQP 512 (625)
T ss_pred hhHHHHHHHHhhcCcchhHHHHHHHHH-HhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 999999999999999998888888888 5665555444444555555443 11 10 1111111
Q ss_pred --C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHH---HHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010496 378 --M-PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG--VDSNYV---LLANMYAAVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 378 --~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~---~l~~~~~~~g~~~~A~~~~~~m~~~~~ 449 (509)
+ ...-.....+..+-.+.+.|..++|.+++.-..+.+-. .....+ -+...-.+.+...+|..+++-|...+.
T Consensus 513 ~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~ 592 (625)
T KOG4422|consen 513 IRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNL 592 (625)
T ss_pred HHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCc
Confidence 1 12334556667777788999999999999998765433 112234 455556677889999999999987765
Q ss_pred cc
Q 010496 450 QK 451 (509)
Q Consensus 450 ~~ 451 (509)
..
T Consensus 593 ~~ 594 (625)
T KOG4422|consen 593 PI 594 (625)
T ss_pred hh
Confidence 43
No 28
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.70 E-value=1.9e-13 Score=122.32 Aligned_cols=205 Identities=16% Similarity=0.123 Sum_probs=169.5
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHH
Q 010496 225 CANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEAL 301 (509)
Q Consensus 225 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~ 301 (509)
....|++++|...|++.+..+-......|| +.-.+...|++++|++.|-++. ..+..+.-.+.+.|-...+...|+
T Consensus 500 ~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqai 578 (840)
T KOG2003|consen 500 AFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAI 578 (840)
T ss_pred eeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHH
Confidence 345688999999999998776444444444 4556778899999999998775 457777778888899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 010496 302 EYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PM 380 (509)
Q Consensus 302 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 380 (509)
+++.+.... ++.|+..+..|...|-+.|+-..|.+.+-.--+ -++-+..+...|...|....-+++++.+|++. -+
T Consensus 579 e~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaali 655 (840)
T KOG2003|consen 579 ELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI 655 (840)
T ss_pred HHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc
Confidence 999888775 566788889999999999999999887765542 34558889999999999999999999999997 57
Q ss_pred CCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 010496 381 KPNEVVLGSLLAAC-RTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGK 433 (509)
Q Consensus 381 ~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 433 (509)
.|+..-|..++..| .+.|++.+|.++|+..-+..|.+...+..|++.+...|-
T Consensus 656 qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 656 QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 89999999988765 578999999999999999999999999999998887764
No 29
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.69 E-value=1.8e-13 Score=123.56 Aligned_cols=384 Identities=16% Similarity=0.113 Sum_probs=263.3
Q ss_pred hHHHHHHHHcCCChhHHHHHHHHHhhCCCCCC-cccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 010496 48 WTSSISRHCRSGRIAEAALEFTRMTLHGTNPN-HITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLD 126 (509)
Q Consensus 48 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 126 (509)
+-+...-|.++|++++|++.|.+.++ ..|| +..|...-.+|... |+++...+--...++.+ |+-..++..-..
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~l--gd~~~Vied~TkALEl~--P~Y~KAl~RRA~ 191 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESL--GDWEKVIEDCTKALELN--PDYVKALLRRAS 191 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHH--hhHHHHHHHHHHHhhcC--cHHHHHHHHHHH
Confidence 44456678899999999999999998 5788 66677777777777 99999888877777664 776778888888
Q ss_pred HHHhcCCchHHHHHH------HhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CH-----------------
Q 010496 127 MYAKFGRMDLATVVF------DAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVR---DA----------------- 180 (509)
Q Consensus 127 ~~~~~g~~~~A~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~----------------- 180 (509)
++-..|++++|+.=. +.....+. ..++.-..+.--..++.+-|..-..| +.
T Consensus 192 A~E~lg~~~eal~D~tv~ci~~~F~n~s~---~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~ 268 (606)
T KOG0547|consen 192 AHEQLGKFDEALFDVTVLCILEGFQNASI---EPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPL 268 (606)
T ss_pred HHHhhccHHHHHHhhhHHHHhhhcccchh---HHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccccc
Confidence 999999998875422 21111111 11111111111112233333311111 11
Q ss_pred ------hHHHHHHHHHHH--cC---ChHHHHHHHHHHHHcC-CCC-----C------HhHHHHHHHHHHccCCHHHHHHH
Q 010496 181 ------ISWTALLNGFVK--RG---YFEEALECFREMQISG-VEP-----D------YVTIISVLNACANVGTLGIGLWI 237 (509)
Q Consensus 181 ------~~~~~li~~~~~--~~---~~~~A~~~~~~m~~~~-~~p-----~------~~~~~~l~~~~~~~~~~~~a~~~ 237 (509)
.+...+..++.. .+ .+..|...+.+-.... ..+ | ..+.......+.-.|+.-.+..-
T Consensus 269 ~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d 348 (606)
T KOG0547|consen 269 FDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQED 348 (606)
T ss_pred ccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhh
Confidence 111111111111 11 2333333333221110 011 1 11122222234556888899999
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 010496 238 HRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKP 314 (509)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 314 (509)
|+..+... +.+...|-.+..+|....+.++....|.+.. ..++.+|..-.+.+.-.+++++|..=|++.+.. .|
T Consensus 349 ~~~~I~l~-~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--~p 425 (606)
T KOG0547|consen 349 FDAAIKLD-PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--DP 425 (606)
T ss_pred HHHHHhcC-cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--Ch
Confidence 99999987 4444557778888999999999999999876 347789999999999999999999999999985 33
Q ss_pred -CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH--------
Q 010496 315 -DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNE-------- 384 (509)
Q Consensus 315 -~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-------- 384 (509)
+...|..+..+..+.+.+++++..|++..+ .++-.+..|+.....+...++++.|.+.|+.. .+.|+.
T Consensus 426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~ 503 (606)
T KOG0547|consen 426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAA 503 (606)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccch
Confidence 455666666667788999999999999996 55667889999999999999999999999886 455541
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 385 -VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 385 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.+--.++..- =.+++..|..+++++++.+|....+|..|+..-.+.|+.++|+++|++-..
T Consensus 504 plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 504 PLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 1222222222 238999999999999999999999999999999999999999999997654
No 30
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.68 E-value=1.2e-16 Score=145.65 Aligned_cols=258 Identities=17% Similarity=0.131 Sum_probs=111.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 010496 185 ALLNGFVKRGYFEEALECFREMQISGVEPD-YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRC 263 (509)
Q Consensus 185 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 263 (509)
.+...+.+.|++++|++++........+|+ ...|..+...+...++++.|.+.++++...+ +.+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 456778888999999999966554432344 4444555666777889999999999998876 4467777778877 788
Q ss_pred CCHHHHHHHHHhccC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHH
Q 010496 264 GCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEG-FKPDGVSFTGALTACSHAGLIEDGLRYFD 340 (509)
Q Consensus 264 g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 340 (509)
+++++|.+++...-+ ++...+..++..+...++++++.++++.+.... .+.+...|..+...+.+.|+.++|+..++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999998877643 456677788888999999999999999987643 34566778888888999999999999999
Q ss_pred HhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010496 341 IMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMP--MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD 418 (509)
Q Consensus 341 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 418 (509)
++.+. .+.+......++..+...|+.+++.++++... ...|...+..+..++...|+.++|...++++.+..|+++
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 99952 23357788889999999999999888887762 234556788899999999999999999999999999999
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 419 SNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 419 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.....++.++...|+.++|.+++++..+
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccc
Confidence 9999999999999999999999887643
No 31
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.68 E-value=3.4e-13 Score=130.66 Aligned_cols=318 Identities=15% Similarity=0.157 Sum_probs=245.1
Q ss_pred HHHHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHh---cCCCCCHhHHHHHHHHHHHcCChHH
Q 010496 125 LDMYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFD---EMPVRDAISWTALLNGFVKRGYFEE 198 (509)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~---~~~~~~~~~~~~li~~~~~~~~~~~ 198 (509)
++.....|++++|..++.++... ....|.+|...|-..|+.+++...+- .+.+.|...|..+.....+.|++++
T Consensus 146 AN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 146 ANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence 33344459999999999888743 66788899999999999999888764 4455688889999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHh----HHHHHHHHHHhcCCHHHHHHHHH
Q 010496 199 ALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVK----VCNTLIDLYSRCGCIEFARQVFQ 274 (509)
Q Consensus 199 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~ 274 (509)
|.-+|.+.++.. +++...+---...|-+.|+...|...|.++.....+.+.. .-...++.+...++.+.|.+.++
T Consensus 226 A~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999998864 5555555566778889999999999999998876333322 22334666777777788888888
Q ss_pred hccC-----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC---------------------------CCCCHHHHHHH
Q 010496 275 RMHK-----RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEG---------------------------FKPDGVSFTGA 322 (509)
Q Consensus 275 ~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g---------------------------~~p~~~~~~~l 322 (509)
.... -+...++.++..|.+...++.|......+.... ..++... ..+
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl 383 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRL 383 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhH
Confidence 7764 244678888999999999999998888877621 1222222 122
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHhCCCC---CCHHHHHHHHHHHHhc
Q 010496 323 LTACSHAGLIEDGLRYFDIMKKIYRVSP--RIEHYGCIVDLYSRAGRLEDALNVVENMPMK---PNEVVLGSLLAACRTK 397 (509)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---p~~~~~~~l~~~~~~~ 397 (509)
.-++.+.+..+....+...+. .....| +...|.-+.++|.+.|++.+|+.++..+... .+...|-.+..+|...
T Consensus 384 ~icL~~L~~~e~~e~ll~~l~-~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l 462 (895)
T KOG2076|consen 384 MICLVHLKERELLEALLHFLV-EDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMEL 462 (895)
T ss_pred hhhhhcccccchHHHHHHHHH-HhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHH
Confidence 334445555555555555555 344333 5778999999999999999999999998322 2567999999999999
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010496 398 GDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMK 445 (509)
Q Consensus 398 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 445 (509)
|.+++|.+.|++++...|.+..+-..|...+.+.|+.++|.+.++.+.
T Consensus 463 ~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 463 GEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred hhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999876
No 32
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=1e-12 Score=118.10 Aligned_cols=325 Identities=14% Similarity=0.070 Sum_probs=245.1
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHh-HHHHHHHHHHHcCCh
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAI-SWTALLNGFVKRGYF 196 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~~~~ 196 (509)
...+......+.+.|....|+..|-.....-+..|.+.+....-..+.+.+..+...+...+.. .--.+..++....+.
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~ 243 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQH 243 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHH
Confidence 6666666677777888888888888877655556666555554445555554444444332211 112344566666788
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC---CcHhHHHHHHHHHHhcCCHHHHHHHH
Q 010496 197 EEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFK---DNVKVCNTLIDLYSRCGCIEFARQVF 273 (509)
Q Consensus 197 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~ 273 (509)
++++.-.+.....|++.+...-+....+.....|+++|+.+|+++++.+ | .|..+|..++-+-....++.---...
T Consensus 244 ~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PYRl~dmdlySN~LYv~~~~skLs~LA~~v 322 (559)
T KOG1155|consen 244 EEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PYRLDDMDLYSNVLYVKNDKSKLSYLAQNV 322 (559)
T ss_pred HHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence 8888888888888866555554555556678889999999999999885 3 24567776653333322222211222
Q ss_pred HhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHH
Q 010496 274 QRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIE 353 (509)
Q Consensus 274 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 353 (509)
-.+.+-.+.|...+.+-|.-.++.++|...|++.++.+. -....|+.+.+-|...++...|++-++++.+ -.+.|-.
T Consensus 323 ~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyR 399 (559)
T KOG1155|consen 323 SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYR 399 (559)
T ss_pred HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHH
Confidence 233344667788888889999999999999999998632 2456777788889999999999999999994 2344888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 010496 354 HYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAV 431 (509)
Q Consensus 354 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 431 (509)
.|-.|.++|.-.+...-|+-+|++. .++| |...|.+|..+|.+.++.++|++.|++++..+..+...+..|+..|-+.
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l 479 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEEL 479 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence 9999999999999999999999997 6777 6789999999999999999999999999999888888999999999999
Q ss_pred CCchHHHHHHHHHHh
Q 010496 432 GKWDGAGKIRRTMKG 446 (509)
Q Consensus 432 g~~~~A~~~~~~m~~ 446 (509)
++.++|.+.|++.++
T Consensus 480 ~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 480 KDLNEAAQYYEKYVE 494 (559)
T ss_pred HhHHHHHHHHHHHHH
Confidence 999999999998876
No 33
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=1.7e-13 Score=122.64 Aligned_cols=393 Identities=12% Similarity=0.055 Sum_probs=252.2
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHH-HHhhcCCCccchhHHHHHHHHHHHhCCCCC---chHHHHHH
Q 010496 49 TSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITL-LSGCADFPSQCLFLGAMIHGLVCKLGLDRN---NVMVGTAL 124 (509)
Q Consensus 49 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~~l 124 (509)
..|.+.|..+....+|+..|+.+.+...-|+......- -..+.+. +++..|.+.+...+..-.... -+.+.+.+
T Consensus 205 ~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kk--r~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 205 FNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKK--REFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeeh--hhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 34555666667777777777777766555655433221 1223333 666666666665554421111 01233333
Q ss_pred HHHHHhcCCchHHHHHHHhcCC--CChHHHHHHHHHHHhCCCHHHHHHHHhcCC--------------------------
Q 010496 125 LDMYAKFGRMDLATVVFDAMRV--KSSFTWNAMIDGYMRRGDIESAVRMFDEMP-------------------------- 176 (509)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------------------------- 176 (509)
...+.+.|+++.|+.-|+...+ |+..+-..|+-++..-|+-++..+.|..|.
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~ea 362 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEA 362 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHH
Confidence 4445666677777666666553 344433334444444555555555555543
Q ss_pred --------------------------------CCCH-------------hHHH--------HHHHHHHHcCChHHHHHHH
Q 010496 177 --------------------------------VRDA-------------ISWT--------ALLNGFVKRGYFEEALECF 203 (509)
Q Consensus 177 --------------------------------~~~~-------------~~~~--------~li~~~~~~~~~~~A~~~~ 203 (509)
.++- ..+. .-...+.++|+++.|++++
T Consensus 363 i~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieil 442 (840)
T KOG2003|consen 363 IKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEIL 442 (840)
T ss_pred HhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHH
Confidence 1100 0000 1112355667777777777
Q ss_pred HHHHHcCCCCCHhHHHHH--HHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCh
Q 010496 204 REMQISGVEPDYVTIISV--LNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTL 281 (509)
Q Consensus 204 ~~m~~~~~~p~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 281 (509)
.-+.+..-+.-...-+.| +..+....++..|.++-+..+..+ .-+......-.......|++++|.+.|++....|.
T Consensus 443 kv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nda 521 (840)
T KOG2003|consen 443 KVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDA 521 (840)
T ss_pred HHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCch
Confidence 766654322222222222 222223345666666666655543 33444433334444557899999999999998887
Q ss_pred hhHHHHHH---HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHH
Q 010496 282 VSWNSIIV---GFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCI 358 (509)
Q Consensus 282 ~~~~~l~~---~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 358 (509)
.+-.+|.. .+-..|+.++|++.|-++... +..+...+..+...|-...+...|++++..... -++-|+.+...|
T Consensus 522 sc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl 598 (840)
T KOG2003|consen 522 SCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKL 598 (840)
T ss_pred HHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHH
Confidence 66555543 467789999999999887654 344677777888889999999999999988873 445578899999
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchH
Q 010496 359 VDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDG 436 (509)
Q Consensus 359 i~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 436 (509)
.+.|-+.|+-..|.+..-+. +.-| +..+..-|..-|....-.++++.+|+++.-..|.....-..++.++.+.|++.+
T Consensus 599 ~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqk 678 (840)
T KOG2003|consen 599 ADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQK 678 (840)
T ss_pred HHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHH
Confidence 99999999999999987554 5444 777888888889999999999999999988888765444556667788999999
Q ss_pred HHHHHHHHHhC
Q 010496 437 AGKIRRTMKGR 447 (509)
Q Consensus 437 A~~~~~~m~~~ 447 (509)
|..+|+..-.+
T Consensus 679 a~d~yk~~hrk 689 (840)
T KOG2003|consen 679 AFDLYKDIHRK 689 (840)
T ss_pred HHHHHHHHHHh
Confidence 99999988554
No 34
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.64 E-value=1.1e-11 Score=115.98 Aligned_cols=414 Identities=11% Similarity=0.058 Sum_probs=236.8
Q ss_pred CCCCCccchHHHHHHHHcCCChhHHHHHHHH----HhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCC
Q 010496 40 STVNPTVQWTSSISRHCRSGRIAEAALEFTR----MTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDR 115 (509)
Q Consensus 40 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 115 (509)
..+.+...|-+-...--++|+.+...+++.+ +...|+..+-..|..=...|-.. |..-.++.+....+..|++.
T Consensus 435 ~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~a--gsv~TcQAIi~avigigvEe 512 (913)
T KOG0495|consen 435 IIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDA--GSVITCQAIIRAVIGIGVEE 512 (913)
T ss_pred hCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhc--CChhhHHHHHHHHHhhcccc
Confidence 4455667777777777788888888877665 34567777777776666666666 66667777777776666654
Q ss_pred Cc-hHHHHHHHHHHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHH
Q 010496 116 NN-VMVGTALLDMYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR---DAISWTALLN 188 (509)
Q Consensus 116 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~ 188 (509)
.+ ..+|..-...|.+.+.++-|..+|....+- +...|......=-..|..+.-..+|++.... ....|-....
T Consensus 513 ed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ak 592 (913)
T KOG0495|consen 513 EDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAK 592 (913)
T ss_pred chhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHH
Confidence 32 346666666677777777776666665431 3344444444434444455555544443221 2333333334
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH
Q 010496 189 GFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEF 268 (509)
Q Consensus 189 ~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 268 (509)
.+-..|+...|..++....+.. +.+...+...+........++.|..+|.+.... .++..+|..-+....-.++.++
T Consensus 593 e~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~ee 669 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEE 669 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHH
Confidence 4444455555555555444432 223444444444444555555555555444442 2344444444444444444555
Q ss_pred HHHHHHhccCC---ChhhHHHHHHHHHhCC----------------------------------ChHHHHHHHHHHHHCC
Q 010496 269 ARQVFQRMHKR---TLVSWNSIIVGFAVNG----------------------------------FVGEALEYFNSMQKEG 311 (509)
Q Consensus 269 a~~~~~~~~~~---~~~~~~~l~~~~~~~~----------------------------------~~~~A~~~~~~m~~~g 311 (509)
|.+++++..+. -...|..+.+.+-+.+ ..-.|..++++....+
T Consensus 670 A~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 670 ALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 55555444432 1123444444444444 4444555554444432
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHH
Q 010496 312 FKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLL 391 (509)
Q Consensus 312 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~ 391 (509)
+-+...|...|+.-.+.|+.+.|..+..++.+ ..+.+-..|..-|....+.++-......+++. .-|.++...+.
T Consensus 750 -Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia 824 (913)
T KOG0495|consen 750 -PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIA 824 (913)
T ss_pred -CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHH
Confidence 12334444444444455555555554444443 22333334444444444444433333333333 35667777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEE
Q 010496 392 AACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIH 465 (509)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 465 (509)
..+....++++|.+-|.+++..+|++..+|..+...+.+.|.-++-.+++++.... .|.-+..|..+..-+.
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~--EP~hG~~W~avSK~i~ 896 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA--EPTHGELWQAVSKDIK 896 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCCCcHHHHHhhhHH
Confidence 88888899999999999999999999999999999999999999999999988764 4566666665544333
No 35
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.64 E-value=8.4e-13 Score=125.91 Aligned_cols=275 Identities=10% Similarity=0.024 Sum_probs=191.0
Q ss_pred CCCHHHHHHHHhcCCCC--CHhHHH-HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHH--HHHHHHHccCCHHHHHH
Q 010496 162 RGDIESAVRMFDEMPVR--DAISWT-ALLNGFVKRGYFEEALECFREMQISGVEPDYVTII--SVLNACANVGTLGIGLW 236 (509)
Q Consensus 162 ~~~~~~A~~~~~~~~~~--~~~~~~-~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~ 236 (509)
.|++++|++.+...... ++..+. .......+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 57888888777765443 233333 3344557888888888888888763 45543332 33566778888888888
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCh---h--------hHHHHHHHHHhCCChHHHHHHHH
Q 010496 237 IHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTL---V--------SWNSIIVGFAVNGFVGEALEYFN 305 (509)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~--------~~~~l~~~~~~~~~~~~A~~~~~ 305 (509)
.++++.+.. |-+..++..+...|.+.|++++|.+++..+.+... . +|..++.......+.+...++++
T Consensus 175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~ 253 (398)
T PRK10747 175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK 253 (398)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 888888776 66777888888888888888888888877764311 1 23333443444455566666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-C
Q 010496 306 SMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-N 383 (509)
Q Consensus 306 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~ 383 (509)
.+.+. .+.+......+..++...|+.++|.+++++..+ .+++.... ++.+....++.+++.+.++.. +..| |
T Consensus 254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~---~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~ 327 (398)
T PRK10747 254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK---RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT 327 (398)
T ss_pred hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCC
Confidence 65443 344666777788888888889888888888873 23444222 233334558888888888776 4555 4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 384 EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 384 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
...+..+...|.+.+++++|.+.|+++.+..|++ ..+..++.++.+.|+.++|.+++++-..
T Consensus 328 ~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 328 PLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5567788888888889999999999988888775 4577888888899999999888886654
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.64 E-value=4.2e-14 Score=132.75 Aligned_cols=275 Identities=15% Similarity=0.109 Sum_probs=208.8
Q ss_pred CHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHccCCHHHHHHHH
Q 010496 164 DIESAVRMFDEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISG--VEPDYVTIISVLNACANVGTLGIGLWIH 238 (509)
Q Consensus 164 ~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 238 (509)
+..+|...|..++.. .......+.++|...+++++|.++|+.+.+.. ..-+...|.+.+..+-+. -++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 467888888875543 34555677888999999999999998887752 112566777777655332 222333
Q ss_pred -HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 010496 239 -RYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKP 314 (509)
Q Consensus 239 -~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 314 (509)
+.+++.. +..+.+|.++.++|.-+++.+.|++.|++..+- ...+|+.+..-+.....+|.|...|+..+.. .|
T Consensus 410 aq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--~~ 486 (638)
T KOG1126|consen 410 AQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--DP 486 (638)
T ss_pred HHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--Cc
Confidence 3444444 667888999999999999999999999988754 4467888888888888999999999887753 22
Q ss_pred C-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 010496 315 D-GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSL 390 (509)
Q Consensus 315 ~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 390 (509)
. -..|..+...|.+.++++.|+-.|+++. .+.| +.+....+...+.+.|+.++|+++++++ ...| |+..--..
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 2 2345556677889999999999999988 4455 5666777788888999999999999887 4444 55555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 391 LAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
+..+...+++++|+..++++.+.-|++..+|..++..|.+.|+.+.|+.-|.-+.+..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 6677888999999999999999999999999999999999999999999888776643
No 37
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.63 E-value=2.1e-12 Score=123.23 Aligned_cols=277 Identities=11% Similarity=-0.030 Sum_probs=217.2
Q ss_pred cCCchHHHHHHHhcCCC--ChHHHHHH-HHHHHhCCCHHHHHHHHhcCCCC--CHhHHH--HHHHHHHHcCChHHHHHHH
Q 010496 131 FGRMDLATVVFDAMRVK--SSFTWNAM-IDGYMRRGDIESAVRMFDEMPVR--DAISWT--ALLNGFVKRGYFEEALECF 203 (509)
Q Consensus 131 ~g~~~~A~~~~~~~~~~--~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~--~li~~~~~~~~~~~A~~~~ 203 (509)
.|+++.|.+.+...... ++..+..+ ..+..+.|+++.|.+.|.++.+. +..... .....+...|++++|...+
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l 176 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV 176 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 69999999999877653 23333333 44558899999999999988654 322222 3367889999999999999
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcH-------hHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010496 204 REMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNV-------KVCNTLIDLYSRCGCIEFARQVFQRM 276 (509)
Q Consensus 204 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (509)
+++.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...++++.+
T Consensus 177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l 255 (398)
T PRK10747 177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ 255 (398)
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 9998864 446778888899999999999999999999988743222 13334444444555667777777777
Q ss_pred cC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHH
Q 010496 277 HK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIE 353 (509)
Q Consensus 277 ~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 353 (509)
.+ .++.....+...+...|+.++|.+.+++..+. .|+.... ++.+....++.+++.+..+...+ ..+-|..
T Consensus 256 p~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~ 329 (398)
T PRK10747 256 SRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIK--QHGDTPL 329 (398)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHh--hCCCCHH
Confidence 53 47788899999999999999999999999884 5555322 33444566999999999999985 3345677
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010496 354 HYGCIVDLYSRAGRLEDALNVVENM-PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLD 414 (509)
Q Consensus 354 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 414 (509)
.+..+...+.+.+++++|.+.|+.+ ...|+...+..+...+.+.|+.++|.+++++.+..-
T Consensus 330 l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 330 LWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 7889999999999999999999997 788999999999999999999999999999987643
No 38
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.63 E-value=4.3e-12 Score=113.03 Aligned_cols=358 Identities=13% Similarity=0.138 Sum_probs=230.9
Q ss_pred cccCCCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCC
Q 010496 36 NNSKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDR 115 (509)
Q Consensus 36 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 115 (509)
..-+..+.+..+|.++|.++|+--..+.|.++|++-.....+.+..+||.+|.+.+-. ....+...|....+.|
T Consensus 198 L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~------~~K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 198 LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS------VGKKLVAEMISQKMTP 271 (625)
T ss_pred HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh------ccHHHHHHHHHhhcCC
Confidence 3345666778899999999999999999999999998877888999999999875444 3478899999999999
Q ss_pred CchHHHHHHHHHHHhcCCchHHHHHH----HhcC----CCChHHHHHHHHHHHhCCCHHH-HHHHHhcCC----------
Q 010496 116 NNVMVGTALLDMYAKFGRMDLATVVF----DAMR----VKSSFTWNAMIDGYMRRGDIES-AVRMFDEMP---------- 176 (509)
Q Consensus 116 ~~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~----~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~~~---------- 176 (509)
+ ..++|+++.+..+.|+++.|.+.+ .+|+ +|+..+|..+|..+.+.++..+ |..++.++.
T Consensus 272 n-l~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 272 N-LFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred c-hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 8 999999999999999988766554 4443 4677788888888877777644 333332221
Q ss_pred --CCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcC----CCCC---HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 010496 177 --VRDAISWTALLNGFVKRGYFEEALECFREMQISG----VEPD---YVTIISVLNACANVGTLGIGLWIHRYVLKQDFK 247 (509)
Q Consensus 177 --~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~----~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 247 (509)
..|...|...+..|.+..+.+-|..+..-+.... +.|+ ..-|..+....|+....+.-...|..|+-.-.-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 1145556666666667777777766654443221 2222 122444555566666666666777777666556
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH---HHHHHHH
Q 010496 248 DNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGV---SFTGALT 324 (509)
Q Consensus 248 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---~~~~li~ 324 (509)
|+..+...++++..-.|.++-.-+++.++..-+ ..-+-+--++++..|......|+.. -+.....
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g------------ht~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~a 498 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG------------HTFRSDLREEILMLLARDKLHPLTPEREQLQVAFA 498 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh------------hhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Confidence 666666666666666666666666665554211 1111222334444444443344322 2222222
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhc
Q 010496 325 ACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-------PMKPNEVVLGSLLAACRTK 397 (509)
Q Consensus 325 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~ 397 (509)
-|.. .-.+.....-.+++ .........+.+.-.+.+.|+.++|.+++..+ ...|......-++......
T Consensus 499 k~aa-d~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~ 574 (625)
T KOG4422|consen 499 KCAA-DIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS 574 (625)
T ss_pred HHHH-HHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence 2211 11112222223344 22334455777788899999999999998766 2334455556777778888
Q ss_pred CCHHHHHHHHHHHHhcCCC
Q 010496 398 GDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 398 g~~~~a~~~~~~~~~~~~~ 416 (509)
+....|..+++-+...+..
T Consensus 575 ~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 575 NSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred CCHHHHHHHHHHHHHcCch
Confidence 8999999999998776544
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=1.2e-13 Score=129.81 Aligned_cols=275 Identities=13% Similarity=0.088 Sum_probs=209.9
Q ss_pred CchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC------CHhHHHHHHHHHHHcCChHHHHHHH
Q 010496 133 RMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR------DAISWTALLNGFVKRGYFEEALECF 203 (509)
Q Consensus 133 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~ 203 (509)
+..+|..+|+.++.. ...+...+..+|...+++++|+++|+.+... +...|.+.+..+-+ +-++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 467888888886532 3456667788899999999999999887643 67788887766543 2334433
Q ss_pred HH-HHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChh
Q 010496 204 RE-MQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLV 282 (509)
Q Consensus 204 ~~-m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 282 (509)
.+ +... -+-.+.+|..+..+|+-+++.+.|++.|++.++.+ +....+|+.+..-+.....+|.|...|+.....|+.
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r 487 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR 487 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence 33 3332 24457889999999999999999999999999876 557888888888888889999999999998887777
Q ss_pred hHHH---HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHH
Q 010496 283 SWNS---IIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCI 358 (509)
Q Consensus 283 ~~~~---l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l 358 (509)
.|++ +.-.|.+.++++.|+-.|+++++.+ +-+.+....+...+-+.|+.++|+++++++.. +.| |+-.-..-
T Consensus 488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~---ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH---LDPKNPLCKYHR 563 (638)
T ss_pred hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh---cCCCCchhHHHH
Confidence 6665 5667889999999999999988853 22455566677778888999999999998882 233 44444455
Q ss_pred HHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010496 359 VDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV 417 (509)
Q Consensus 359 i~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 417 (509)
+..+...+++++|+..++++ .+.|+ ..++..++..|.+.|+.+.|+.-|..+.+++|..
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 66778888999999999988 45665 4577777888999999999999999998888874
No 40
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.61 E-value=5.5e-12 Score=121.03 Aligned_cols=115 Identities=11% Similarity=-0.009 Sum_probs=57.7
Q ss_pred hcCCchHHHHHHHhcCCC--C-hHHHHHHHHHHHhCCCHHHHHHHHhcCCC--CCH--hHHHHHHHHHHHcCChHHHHHH
Q 010496 130 KFGRMDLATVVFDAMRVK--S-SFTWNAMIDGYMRRGDIESAVRMFDEMPV--RDA--ISWTALLNGFVKRGYFEEALEC 202 (509)
Q Consensus 130 ~~g~~~~A~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~~A~~~ 202 (509)
..|+++.|.+.+.+..+. + ...+-....++.+.|+++.|.+.|....+ |+. ...-.....+...|++++|...
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~ 175 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG 175 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence 346666666666554432 1 12223333445555666666665555321 111 1222234555556666666666
Q ss_pred HHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 010496 203 FREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQD 245 (509)
Q Consensus 203 ~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 245 (509)
++.+.+.. +-+...+..+...+...|+++.|.+++..+.+.+
T Consensus 176 l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~ 217 (409)
T TIGR00540 176 VDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAG 217 (409)
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 66665542 2234455555555666666666666666665554
No 41
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.59 E-value=4.4e-12 Score=121.68 Aligned_cols=281 Identities=11% Similarity=0.037 Sum_probs=206.7
Q ss_pred HHhCCCHHHHHHHHhcCCCC--C-HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHh--HHHHHHHHHHccCCHHH
Q 010496 159 YMRRGDIESAVRMFDEMPVR--D-AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYV--TIISVLNACANVGTLGI 233 (509)
Q Consensus 159 ~~~~~~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~~~~~~ 233 (509)
....|+++.|.+.+....+. + ...+-....++.+.|+++.|.+.+.+..+. .|+.. ........+...|+++.
T Consensus 94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~ 171 (409)
T TIGR00540 94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHA 171 (409)
T ss_pred HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHH
Confidence 34689999999999877543 2 334455567888999999999999998774 35543 33445788889999999
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHH----HHHHHHhCCChHHHHHHHHH
Q 010496 234 GLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNS----IIVGFAVNGFVGEALEYFNS 306 (509)
Q Consensus 234 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~----l~~~~~~~~~~~~A~~~~~~ 306 (509)
|...++.+.+.. |-+..++..+..++...|++++|.+.+..+.+. +...+.. ........+..+.+.+.+..
T Consensus 172 Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 172 ARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999987 778889999999999999999999999998853 3333321 11122333333334445555
Q ss_pred HHHCCC---CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHH-HHHHHHHH--HHhcCChHHHHHHHHhC-C
Q 010496 307 MQKEGF---KPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIE-HYGCIVDL--YSRAGRLEDALNVVENM-P 379 (509)
Q Consensus 307 m~~~g~---~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~--~~~~g~~~~A~~~~~~~-~ 379 (509)
+..... +.+...+..+...+...|+.++|.+.+++..+.. |+.. ....++.. ....++.+.+.+.++.. +
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~---pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL---GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC---CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 554321 1377888888899999999999999999999532 3322 11012222 23457788888888776 4
Q ss_pred CCCC-H--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 380 MKPN-E--VVLGSLLAACRTKGDIILAERLMK--YLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 380 ~~p~-~--~~~~~l~~~~~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
..|+ . ....++...+.+.|++++|.+.|+ ...+..|++. .+..++..+.+.|+.++|.+++++-..
T Consensus 328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5554 4 567789999999999999999999 5666777654 477999999999999999999997643
No 42
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.59 E-value=1.5e-14 Score=131.76 Aligned_cols=223 Identities=19% Similarity=0.210 Sum_probs=72.9
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHH
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPV--RDAISWTALLNGFVK 192 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~ 192 (509)
+..|..+.......++++.|++.++++... ++..+..++.. ...+++++|.+++...-+ +++..+..++..+.+
T Consensus 44 ~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~ 122 (280)
T PF13429_consen 44 PEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYR 122 (280)
T ss_dssp ---------------------------------------------------------------------------H-HHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccccchhhHHHHHHHH
Confidence 444444444444444555555555544432 22233333333 344555555554443321 234444555555666
Q ss_pred cCChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 010496 193 RGYFEEALECFREMQISG-VEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQ 271 (509)
Q Consensus 193 ~~~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 271 (509)
.++++++.++++.+.... .+.+...|..+...+.+.|+.++|.+.++++++.. |.+..+...++..+...|+.+++.+
T Consensus 123 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~ 201 (280)
T PF13429_consen 123 LGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEARE 201 (280)
T ss_dssp TT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHH
Confidence 666666666666654322 22344455555555666666666666666666654 4445556666666666666665444
Q ss_pred HHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 272 VFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 272 ~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
++.... ..|+..+..+..++...|+.++|+.+|++..+. .+.|......+..++...|+.++|.++.+++.
T Consensus 202 ~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 202 ALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence 444433 234455556666666666666666666665553 12245555556666666666666666655544
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=6.2e-11 Score=109.53 Aligned_cols=262 Identities=13% Similarity=0.028 Sum_probs=207.6
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLID 258 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (509)
++........-+...+++.+..++.+...+.. ++....+..-|.++...|+..+-..+=.++++.- |....+|.++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHH
Confidence 33444445556667788888888888887763 5666677777778888888877777777777764 677888989988
Q ss_pred HHHhcCCHHHHHHHHHhccCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010496 259 LYSRCGCIEFARQVFQRMHKRT---LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDG 335 (509)
Q Consensus 259 ~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 335 (509)
.|.-.|+..+|+++|.+...-| ...|-.....|+-.|..+.|+..|...-+. ++-...-+.-+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 8888899999999999876443 368999999999999999999988877663 221222233344558889999999
Q ss_pred HHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 010496 336 LRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENMP--------MKP-NEVVLGSLLAACRTKGDIILAER 405 (509)
Q Consensus 336 ~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--------~~p-~~~~~~~l~~~~~~~g~~~~a~~ 405 (509)
.++|..+. ++-| |+...+.+.-.....+.+.+|..+|+... ..+ -..+++.|..+|.+.+.+++|+.
T Consensus 400 e~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 400 EKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 99999988 4445 67777888777778899999999997751 111 34478999999999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 406 LMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.+++++...|.+..++.+++..|...|+++.|...|.+..-
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999988654
No 44
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.56 E-value=3.7e-11 Score=116.88 Aligned_cols=360 Identities=13% Similarity=0.082 Sum_probs=238.6
Q ss_pred ccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHH
Q 010496 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTAL 124 (509)
Q Consensus 45 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 124 (509)
+...-.....+...|+.++|..++.+.++.. +-....|.+|-..+-.. |+.+.+...+- ....+.|.+...|..+
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqr--Gd~eK~l~~~l--lAAHL~p~d~e~W~~l 213 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQR--GDIEKALNFWL--LAAHLNPKDYELWKRL 213 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHc--ccHHHHHHHHH--HHHhcCCCChHHHHHH
Confidence 3333344444555699999999999988763 33667788888888777 77777766554 4444567778889999
Q ss_pred HHHHHhcCCchHHHHHHHhcCCCCh---HHHHHHHHHHHhCCCHHHHHHHHhcCCCCCH----hHH----HHHHHHHHHc
Q 010496 125 LDMYAKFGRMDLATVVFDAMRVKSS---FTWNAMIDGYMRRGDIESAVRMFDEMPVRDA----ISW----TALLNGFVKR 193 (509)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~----~~~----~~li~~~~~~ 193 (509)
.....+.|+++.|.-+|.+..+.++ ..+---...|-+.|+...|.+.|.++.+.++ .-+ ...++.+...
T Consensus 214 adls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 214 ADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITH 293 (895)
T ss_pred HHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHh
Confidence 9888899999999999988875433 3333456678888998888888877754322 222 2345566677
Q ss_pred CChHHHHHHHHHHHHcC-CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC---------------------------
Q 010496 194 GYFEEALECFREMQISG-VEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQD--------------------------- 245 (509)
Q Consensus 194 ~~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------------------- 245 (509)
++-+.|.+.++.....+ -..+...+++++..+.+...++.+...........
T Consensus 294 ~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~ 373 (895)
T KOG2076|consen 294 NERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKE 373 (895)
T ss_pred hHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCC
Confidence 77788888888776632 23345567777888888888888887777666511
Q ss_pred CCCcHhHHHHHHHHHHhc--CCHHHHHHHHHhcc----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 010496 246 FKDNVKVCNTLIDLYSRC--GCIEFARQVFQRMH----KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSF 319 (509)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 319 (509)
..++..++ .+.-++... +...+++.-|..-. ..++..|.-+..+|...|++.+|+.+|..+......-+...|
T Consensus 374 ~s~~l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw 452 (895)
T KOG2076|consen 374 LSYDLRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVW 452 (895)
T ss_pred CCccchhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhh
Confidence 12222231 122223333 33333333322221 124567778888888888888888888888876544556678
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC-----------CCCCHHHHH
Q 010496 320 TGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMP-----------MKPNEVVLG 388 (509)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-----------~~p~~~~~~ 388 (509)
..+..+|...|.++.|.+.|+++.. -.+.+...-..|...+.+.|+.++|.+.+..+. ..|+.....
T Consensus 453 ~~~a~c~~~l~e~e~A~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~ 530 (895)
T KOG2076|consen 453 YKLARCYMELGEYEEAIEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILA 530 (895)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHH
Confidence 8888888888888888888888884 223345566677778888888888888888862 234444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 389 SLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
.....+...|+.++-......++.
T Consensus 531 ~r~d~l~~~gk~E~fi~t~~~Lv~ 554 (895)
T KOG2076|consen 531 HRCDILFQVGKREEFINTASTLVD 554 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 555566777777665554444433
No 45
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.55 E-value=7.6e-12 Score=107.55 Aligned_cols=232 Identities=13% Similarity=0.079 Sum_probs=120.5
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhh--------HHHHHHHHHh
Q 010496 222 LNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVS--------WNSIIVGFAV 293 (509)
Q Consensus 222 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--------~~~l~~~~~~ 293 (509)
..-|...|-+|.|+.+|..+.+.+ ..-......|+..|-...+|++|+++-+++.+-+... |--+...+..
T Consensus 114 ~~Dym~aGl~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~ 192 (389)
T COG2956 114 GRDYMAAGLLDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA 192 (389)
T ss_pred HHHHHHhhhhhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence 334444455555555555554433 2233444445555555555555555554444322222 2223333334
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010496 294 NGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALN 373 (509)
Q Consensus 294 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 373 (509)
..+.+.|..++.+......+ ....-..+.+.....|+++.|.+.++.+.+ .+..--..+...|..+|...|+.++...
T Consensus 193 ~~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-Qn~~yl~evl~~L~~~Y~~lg~~~~~~~ 270 (389)
T COG2956 193 SSDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLE-QNPEYLSEVLEMLYECYAQLGKPAEGLN 270 (389)
T ss_pred hhhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 55666666666666654221 122222344556666667777666666663 2222224455666666777777777666
Q ss_pred HHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH---HcCCchHHHHHHHHHHhCCC
Q 010496 374 VVENM-PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYA---AVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 374 ~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~A~~~~~~m~~~~~ 449 (509)
++.++ ...+....-..+...-....-.+.|...+.+-+...|.- ..+..++.... ..|+..+.+.+++.|+...+
T Consensus 271 fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l 349 (389)
T COG2956 271 FLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL 349 (389)
T ss_pred HHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence 66554 344444444444444444445566666666666655543 23444444332 23557777778888877766
Q ss_pred ccCCcccE
Q 010496 450 QKKPGLSS 457 (509)
Q Consensus 450 ~~~~~~~~ 457 (509)
+.+|.+-.
T Consensus 350 ~~~~~YRC 357 (389)
T COG2956 350 RRKPRYRC 357 (389)
T ss_pred hhcCCcee
Confidence 66665433
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.54 E-value=1.1e-11 Score=106.48 Aligned_cols=280 Identities=13% Similarity=0.125 Sum_probs=193.9
Q ss_pred cCCchHHHHHHHhcCCCChHHH---HHHHHHHHhCCCHHHHHHHHhcCCCC-C------HhHHHHHHHHHHHcCChHHHH
Q 010496 131 FGRMDLATVVFDAMRVKSSFTW---NAMIDGYMRRGDIESAVRMFDEMPVR-D------AISWTALLNGFVKRGYFEEAL 200 (509)
Q Consensus 131 ~g~~~~A~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~~~~~~~A~ 200 (509)
..+.++|+.+|-+|.+.|+.++ -+|.+.|.+.|..|.|+++-..+... | ..+...|..-|...|-++.|+
T Consensus 48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 5677888888888776655444 45677777888888888877766543 2 223445667778888888888
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc----HhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010496 201 ECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDN----VKVCNTLIDLYSRCGCIEFARQVFQRM 276 (509)
Q Consensus 201 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (509)
.+|..+.+.+ ..-......|+..|-...+|++|..+-+++.+.+-.+. ...|..|...+....+.+.|...+.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 8888887654 33455667778888888888888888887777664333 234666777777778888888888887
Q ss_pred cCCCh---hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHH
Q 010496 277 HKRTL---VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIE 353 (509)
Q Consensus 277 ~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 353 (509)
.+.|+ ..--.+...+...|++..|.+.++...+.+...-+.+...|..+|.+.|+.++...++.++.+ . .+...
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~-~--~~g~~ 283 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME-T--NTGAD 283 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-c--cCCcc
Confidence 75433 344456677888899999999999888875555566778888899999999999998888873 2 34444
Q ss_pred HHHHHHHHHHhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcC
Q 010496 354 HYGCIVDLYSRAGRLEDALNVV-ENMPMKPNEVVLGSLLAACRT---KGDIILAERLMKYLVDLD 414 (509)
Q Consensus 354 ~~~~li~~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~ 414 (509)
.-..+.+.-......+.|...+ +.+.-+|+...+..|+..... -|...+-...++.|+...
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~ 348 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQ 348 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHH
Confidence 4444555444555555555554 556778999988888876543 334555556666665543
No 47
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.54 E-value=5.7e-10 Score=104.91 Aligned_cols=344 Identities=13% Similarity=0.060 Sum_probs=177.8
Q ss_pred HHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Q 010496 54 RHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGR 133 (509)
Q Consensus 54 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 133 (509)
+-...-+.+.|.-++.+..+. ++.+...| -++++. ..++.|.++++...+. -|.+..+|.+-...--.+|+
T Consensus 385 aAVelE~~~darilL~rAvec-cp~s~dLw----lAlarL--etYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn 455 (913)
T KOG0495|consen 385 AAVELEEPEDARILLERAVEC-CPQSMDLW----LALARL--ETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGN 455 (913)
T ss_pred HHHhccChHHHHHHHHHHHHh-ccchHHHH----HHHHHH--HHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCC
Confidence 334456667788888888874 23333334 344555 7788888888888877 36668888888888888899
Q ss_pred chHHHHHHHhcCC--------CChHHHHHHHHHHHhCC-------------------------------------CHHHH
Q 010496 134 MDLATVVFDAMRV--------KSSFTWNAMIDGYMRRG-------------------------------------DIESA 168 (509)
Q Consensus 134 ~~~A~~~~~~~~~--------~~~~~~~~l~~~~~~~~-------------------------------------~~~~A 168 (509)
.+...+++++-.. -+...|..=...|-..| .++-|
T Consensus 456 ~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~ca 535 (913)
T KOG0495|consen 456 VDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECA 535 (913)
T ss_pred HHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHH
Confidence 8888888876541 13333333333333333 33334
Q ss_pred HHHHhcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 010496 169 VRMFDEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQD 245 (509)
Q Consensus 169 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 245 (509)
..+|....+- +...|...+..--..|..+....+|++.... ++-....|......+-..|+...|..++.++.+..
T Consensus 536 rAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~ 614 (913)
T KOG0495|consen 536 RAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN 614 (913)
T ss_pred HHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC
Confidence 4444333221 2333433333334444555555555555443 12223333333444444555555555555555543
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 010496 246 FKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPD-GVSFTGA 322 (509)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l 322 (509)
+-+...+...+........++.|..+|.+... ++...|.--+...--.+..++|++++++.++. .|+ ...|..+
T Consensus 615 -pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lml 691 (913)
T KOG0495|consen 615 -PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLML 691 (913)
T ss_pred -CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHH
Confidence 33445555555555555555555555555442 33344444444444445555555555555543 222 2334444
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCH
Q 010496 323 LTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPM-KP-NEVVLGSLLAACRTKGDI 400 (509)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~ 400 (509)
.+.+-+.++++.|...|..-.+ ..+-.+..|..|...=-+.|.+-.|..++++..+ .| +...|...|..-.+.|+.
T Consensus 692 GQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~ 769 (913)
T KOG0495|consen 692 GQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNK 769 (913)
T ss_pred hHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCH
Confidence 4444455555555554444332 2222344444444444455555555555555421 12 444555555555555555
Q ss_pred HHHHHHHHHHHh
Q 010496 401 ILAERLMKYLVD 412 (509)
Q Consensus 401 ~~a~~~~~~~~~ 412 (509)
+.|..++.++++
T Consensus 770 ~~a~~lmakALQ 781 (913)
T KOG0495|consen 770 EQAELLMAKALQ 781 (913)
T ss_pred HHHHHHHHHHHH
Confidence 555555554444
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=1.2e-10 Score=105.11 Aligned_cols=358 Identities=11% Similarity=0.026 Sum_probs=238.4
Q ss_pred CCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchH
Q 010496 40 STVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVM 119 (509)
Q Consensus 40 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 119 (509)
+...|+.-+-...-.+.+.|....|++.|...... . +..|.+.+....-. .+.+ +.......+....+..
T Consensus 159 ~~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~--P~~W~AWleL~~li--t~~e----~~~~l~~~l~~~~h~M 228 (559)
T KOG1155|consen 159 GGEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR--Y--PWFWSAWLELSELI--TDIE----ILSILVVGLPSDMHWM 228 (559)
T ss_pred cccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc--C--CcchHHHHHHHHhh--chHH----HHHHHHhcCcccchHH
Confidence 44445444444444556678888888888887642 2 33344444332222 2222 2222222221112233
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHhcCCC----ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC------CHhHHHHHHHH
Q 010496 120 VGTALLDMYAKFGRMDLATVVFDAMRVK----SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR------DAISWTALLNG 189 (509)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~ 189 (509)
.---+..++-...+.+++.+-.+..... +...-+....+.-...++++|+.+|+++.+. |..+|+.++..
T Consensus 229 ~~~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv 308 (559)
T KOG1155|consen 229 KKFFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV 308 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH
Confidence 3333555666667777777777666543 3333333444455678899999999988754 56677776644
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHH
Q 010496 190 FVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFA 269 (509)
Q Consensus 190 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 269 (509)
- +.+ ..+.++.+-...--+--+.|+.++.+-|+-.++.++|..+|++.++.+ |....+|+.+..-|....+...|
T Consensus 309 ~--~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AA 383 (559)
T KOG1155|consen 309 K--NDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAA 383 (559)
T ss_pred H--hhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHH
Confidence 3 322 222233222211113345678888888888899999999999999887 67788899999999999999999
Q ss_pred HHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 010496 270 RQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIY 346 (509)
Q Consensus 270 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 346 (509)
.+-|+++.+ .|-..|-.+.++|.-.+...-|+-.|++.... .+-|...|.+|..+|.+.++.++|++.|++... .
T Consensus 384 i~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~-kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~-~ 461 (559)
T KOG1155|consen 384 IESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL-KPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL-L 461 (559)
T ss_pred HHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc-CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh-c
Confidence 999988764 46678888999999999999999999998885 244678889999999999999999999999884 3
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010496 347 RVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-------P-MKPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDP 415 (509)
Q Consensus 347 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 415 (509)
+ ..+...+..|...|-+.++..+|...++.- + ..|. ......|..-+.+.+++++|..........++
T Consensus 462 ~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~ 538 (559)
T KOG1155|consen 462 G-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKGET 538 (559)
T ss_pred c-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCc
Confidence 3 345677888999999999999988877654 1 2332 22333355667788888888887777766533
No 49
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=1.5e-10 Score=102.87 Aligned_cols=278 Identities=14% Similarity=0.142 Sum_probs=144.9
Q ss_pred CCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHH
Q 010496 162 RGDIESAVRMFDEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIH 238 (509)
Q Consensus 162 ~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 238 (509)
.|+|.+|+++..+-.+. ....|-.-+.+.-+.|+.+.+-.++.+.-+..-.++...+.+..+.....|+++.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 45555555555543322 233344444555555666666666665555321333334444445555566666666666
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCh-----------hhHHHHHHHHHhCCChHHHHHHHHHH
Q 010496 239 RYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTL-----------VSWNSIIVGFAVNGFVGEALEYFNSM 307 (509)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~A~~~~~~m 307 (509)
.++.+.+ +.+..+.....++|.+.|++.....++..+.+... .+|..++.-....+..+.-...|+..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 6665554 45555566666666666666666666665554311 24555555444444444444455544
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHH
Q 010496 308 QKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEV 385 (509)
Q Consensus 308 ~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~ 385 (509)
-.+ .+-++..-..++.-+.+.|+.++|.++.++.. +.+..|... .+ -.+.+-++.+.-.+..+.. ...| ++-
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L-k~~~D~~L~---~~-~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDAL-KRQWDPRLC---RL-IPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHH-HhccChhHH---HH-HhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 332 23334444445555566666666666666666 334444411 11 1233444444444433332 1111 234
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
.+.+|...|.+.+.+.+|...|+.+++..|. ...|..++.++.+.|+..+|.+++++....
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 5566666666666666666666666665554 245666666666666666666666655533
No 50
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.50 E-value=2.4e-10 Score=101.58 Aligned_cols=276 Identities=14% Similarity=0.061 Sum_probs=217.5
Q ss_pred cCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC----CHhHHHHHHHHHHHcCChHHHHHHH
Q 010496 131 FGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR----DAISWTALLNGFVKRGYFEEALECF 203 (509)
Q Consensus 131 ~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~ 203 (509)
.|+|..|+++..+..+. ....|..-+.+.-+.|+.+.+-..+.+..++ +....-+..+.....|++..|..-+
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 58899999888876543 3334555556677888999999988887655 3455667778888899999999999
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcH-------hHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010496 204 REMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNV-------KVCNTLIDLYSRCGCIEFARQVFQRM 276 (509)
Q Consensus 204 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (509)
.++.+.+ +-+........++|.+.|++..+..++..+.+.+.-.+. .+|..+++-....+..+.-...++..
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 8888864 445677788888999999999999999999988865443 34555665555555555555566666
Q ss_pred c---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHH
Q 010496 277 H---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIE 353 (509)
Q Consensus 277 ~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 353 (509)
. +.++..-..++.-+.+.|+.++|.++..+..+++..|+ .. ..-.+.+.++...-++..++-.+..+..| .
T Consensus 256 pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h~~~p--~ 329 (400)
T COG3071 256 PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQHPEDP--L 329 (400)
T ss_pred cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhCCCCh--h
Confidence 5 34778888889999999999999999999999877776 22 22346788888888888888776555444 6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010496 354 HYGCIVDLYSRAGRLEDALNVVENM-PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDL 413 (509)
Q Consensus 354 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 413 (509)
.+.+|...|.+.+.+.+|...|+.. +..|+..+|+.+..++.+.|+..+|.++.++....
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 7889999999999999999999976 78999999999999999999999999999988753
No 51
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.50 E-value=1.2e-09 Score=98.97 Aligned_cols=399 Identities=11% Similarity=0.081 Sum_probs=209.2
Q ss_pred CCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchH
Q 010496 40 STVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVM 119 (509)
Q Consensus 40 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 119 (509)
..+-+...|-...+.-..++++..|.++|++.+.-. ..+...|..-+..-.+. .....|+-+++.....- |.-..
T Consensus 68 rnR~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emkn--k~vNhARNv~dRAvt~l--PRVdq 142 (677)
T KOG1915|consen 68 RNRLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKN--KQVNHARNVWDRAVTIL--PRVDQ 142 (677)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhh--hhHhHHHHHHHHHHHhc--chHHH
Confidence 455666677776777777788888888888877632 22333343333333344 56666666666666553 22133
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHhcC--CCChHHHHHHHHHHHhCCCHHHHHHHHhcCC--CCCHhHHHHHHHHHHHcCC
Q 010496 120 VGTALLDMYAKFGRMDLATVVFDAMR--VKSSFTWNAMIDGYMRRGDIESAVRMFDEMP--VRDAISWTALLNGFVKRGY 195 (509)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~ 195 (509)
.|.--+-+--..|++..|.++|++.. +|+...|.+.|..=.+-+.++.|..+++... .|++.+|--..+.-.++|+
T Consensus 143 lWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 143 LWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCc
Confidence 44444444445567777777776654 4666677777776666677777777776543 3455566555555566666
Q ss_pred hHHHHHHHHHHHHc-CC-CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC----------------------------
Q 010496 196 FEEALECFREMQIS-GV-EPDYVTIISVLNACANVGTLGIGLWIHRYVLKQD---------------------------- 245 (509)
Q Consensus 196 ~~~A~~~~~~m~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------- 245 (509)
...|.++|+...+. |- ..+...+.+....-.+...++.|.-+|+-.++.-
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~ 302 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDA 302 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence 66666666655442 10 0011223333333334444455554544444331
Q ss_pred ---------------CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC--Ch---hhHHHHHH--------HHHhCCCh
Q 010496 246 ---------------FKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR--TL---VSWNSIIV--------GFAVNGFV 297 (509)
Q Consensus 246 ---------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~---~~~~~l~~--------~~~~~~~~ 297 (509)
-+.|-.+|--.+..-...|+.+...++|+++... .. ..|...|- .-....+.
T Consensus 303 Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 303 IVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred HhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 0334444444455555555555555555554421 00 11111111 11124455
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 010496 298 GEALEYFNSMQKEGFKPDGVSFTGALTAC----SHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALN 373 (509)
Q Consensus 298 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 373 (509)
+.+.++|+..++. ++-...||..+=-.| .+..++..|.+++..+. |.-|...+|...|..=.+.+.++.+..
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRk 458 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRK 458 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHH
Confidence 5555555555542 222333333222211 24455555666555555 555555555555555555666666666
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 374 VVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG--VDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 374 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
++++. ...| +..+|......-...|+.+.|..+|+-++..... +...|...+..-...|.+++|..+|+++.+.
T Consensus 459 LYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 459 LYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 66554 4444 3445555555555566666666666665553222 2223555555556666666666666666654
No 52
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.49 E-value=2e-09 Score=97.54 Aligned_cols=362 Identities=13% Similarity=0.110 Sum_probs=281.5
Q ss_pred CcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC--C-ChHHHHHH
Q 010496 79 NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV--K-SSFTWNAM 155 (509)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l 155 (509)
+...|..-.+--... ++...|+.+++..+..+ ..|...|..-+.+-.++.++..|..++++... | -...|.-.
T Consensus 72 ~~~~WikYaqwEesq--~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY 147 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQ--KEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKY 147 (677)
T ss_pred HHHHHHHHHHHHHhH--HHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHH
Confidence 344444433333444 89999999999998876 44588899999999999999999999999874 2 23455556
Q ss_pred HHHHHhCCCHHHHHHHHhcCC--CCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHH
Q 010496 156 IDGYMRRGDIESAVRMFDEMP--VRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGI 233 (509)
Q Consensus 156 ~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~ 233 (509)
+..=-..|++..|.++|+.-. +|+..+|.+.|..-.+.+.++.|.++++..+- +.|+..+|.-....-.+.|....
T Consensus 148 ~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 148 IYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHH
Confidence 666667899999999998665 57999999999999999999999999999987 57999999999999999999999
Q ss_pred HHHHHHHHHHc-C-CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---------------------------------
Q 010496 234 GLWIHRYVLKQ-D-FKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK--------------------------------- 278 (509)
Q Consensus 234 a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------------------------------- 278 (509)
+.++|..+++. | -..+...+.++...-.++..++.|.-+|+-...
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~ 305 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG 305 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence 99999988764 2 122344566666655666777777766654321
Q ss_pred -----------C---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHH----HH-HH---hccCCHHH
Q 010496 279 -----------R---TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGV--SFTGA----LT-AC---SHAGLIED 334 (509)
Q Consensus 279 -----------~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~l----i~-~~---~~~~~~~~ 334 (509)
. |-.+|.-.+..-...|+.+...++|++.+.. ++|-.. .|... |+ +| ....+.+.
T Consensus 306 KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 306 KRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred hhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 1 3346666777777789999999999999886 565321 11111 11 11 35678999
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHH----HHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010496 335 GLRYFDIMKKIYRVSPRIEHYGCIVDL----YSRAGRLEDALNVVENM-PMKPNEVVLGSLLAACRTKGDIILAERLMKY 409 (509)
Q Consensus 335 a~~~~~~~~~~~~~~~~~~~~~~li~~----~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 409 (509)
+.++++...+ -++-...+|..+--+ -.++.++..|.+++-.. |..|...+|...|..-.+.++++....+|++
T Consensus 385 tr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEk 462 (677)
T KOG1915|consen 385 TRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEK 462 (677)
T ss_pred HHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999984 333345555544433 45788999999999765 8899999999999999999999999999999
Q ss_pred HHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010496 410 LVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 410 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 449 (509)
.++.+|.+-.+|...+..-...|+++.|..+|+-.+.+..
T Consensus 463 fle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 463 FLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred HHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 9999999999999999999999999999999999887654
No 53
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.43 E-value=8.7e-11 Score=104.25 Aligned_cols=197 Identities=13% Similarity=0.092 Sum_probs=144.4
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010496 250 VKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTAC 326 (509)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 326 (509)
...+..+...+...|++++|.+.++++.+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 45566666777777777777777766542 234566667777777777888888877777653 23455666677777
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 010496 327 SHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAE 404 (509)
Q Consensus 327 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 404 (509)
...|++++|...++++.+..........+..+...+...|++++|...+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888888742222234456677778888888888888888776 3344 4567778888888999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 405 RLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
..++++.+..|.++..+..++..+...|+.++|..+.+.+...
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999998887777777888888888999999999988877553
No 54
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=6.2e-10 Score=99.06 Aligned_cols=266 Identities=12% Similarity=0.034 Sum_probs=207.0
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHH---HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 010496 148 SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTA---LLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224 (509)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 224 (509)
|......+...+...|+.++|+..|++....|+.+... -...+.+.|+.++...+...+.... .-+...|-.-+..
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~ 309 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQL 309 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhh
Confidence 66777788888888888888888888776555544333 2344567888888888887776542 2344444444555
Q ss_pred HHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc--C-CChhhHHHHHHHHHhCCChHHHH
Q 010496 225 CANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH--K-RTLVSWNSIIVGFAVNGFVGEAL 301 (509)
Q Consensus 225 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~-~~~~~~~~l~~~~~~~~~~~~A~ 301 (509)
....+++..|+.+-++.++.+ +.+...|-.-...+...|+.++|.-.|+... . -+..+|.-++.+|...|++.+|.
T Consensus 310 l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 310 LYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHH
Confidence 667788999999999988876 6677777777888889999999999998765 3 47889999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-HHHh-ccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC
Q 010496 302 EYFNSMQKEGFKPDGVSFTGAL-TACS-HAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDALNVVENM 378 (509)
Q Consensus 302 ~~~~~m~~~g~~p~~~~~~~li-~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 378 (509)
-+-+...+. ..-+..+...+. ..|. ...--++|.+++++.. .+.|+ ....+.+...+...|..+.++.++++.
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~ 464 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH 464 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence 888877664 444566666553 3333 3344678999999887 45665 566778888999999999999999886
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010496 379 -PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 379 -~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 419 (509)
...||....+.|...+...+.+.+|...|..+++.+|.+..
T Consensus 465 L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~ 506 (564)
T KOG1174|consen 465 LIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR 506 (564)
T ss_pred HhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence 78899999999999999999999999999999999998743
No 55
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.42 E-value=1e-11 Score=120.16 Aligned_cols=267 Identities=14% Similarity=0.150 Sum_probs=200.1
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 010496 201 ECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRT 280 (509)
Q Consensus 201 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 280 (509)
.++..+...|+.|+..||..++.-||..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46678888999999999999999999999999999 9999998888999999999999999998877665 688
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 010496 281 LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVD 360 (509)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 360 (509)
..+|..+..+|..+|+... .+..++ ....+...+...|.-.....++..+.-..+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8999999999999999766 222222 223344556666766666777766553334455553 3556
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHH
Q 010496 361 LYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKG-DIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGK 439 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 439 (509)
.....|-++.+++++..++..........+++-+.... .+++-..+.+...+ . .++.+|..+..+-.-+|+.+.|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~-~~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-A-PTSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-C-CChHHHHHHHHHHHhcCchhhHHH
Confidence 66778889999999988842211111111344444433 45555555555554 3 356789999999999999999999
Q ss_pred HHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHcCccCCCCcccccc
Q 010496 440 IRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPETVAGELYE 507 (509)
Q Consensus 440 ~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~pd~~~~~~~~ 507 (509)
++.+|++.|+..+++++|.++-+ . +....++-+++-|++.|++|++++...|.
T Consensus 226 ll~emke~gfpir~HyFwpLl~g--------~-------~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG--------I-------NAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc--------C-------ccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 99999999999999999988733 1 22346667778999999999999876553
No 56
>PRK12370 invasion protein regulator; Provisional
Probab=99.41 E-value=2.2e-10 Score=114.35 Aligned_cols=261 Identities=14% Similarity=0.040 Sum_probs=190.1
Q ss_pred CHhHHHHHHHHHHH-----cCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHH---------ccCCHHHHHHHHHHHHH
Q 010496 179 DAISWTALLNGFVK-----RGYFEEALECFREMQISGVEPD-YVTIISVLNACA---------NVGTLGIGLWIHRYVLK 243 (509)
Q Consensus 179 ~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~ 243 (509)
+...|...+++... .+.+++|..+|++..+. .|+ ...|..+..++. ..+++++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 45555555554322 13467899999999885 554 445555554443 23458999999999999
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHH
Q 010496 244 QDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDG-VSF 319 (509)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~ 319 (509)
.+ |.+..++..+..++...|++++|...|+++.+ | +...+..+..++...|++++|+..+++..+. .|+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 87 77888999999999999999999999999764 3 4567888899999999999999999999986 3442 233
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHh
Q 010496 320 TGALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEV-VLGSLLAACRT 396 (509)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~ 396 (509)
..++..+...|++++|...++++.+. .+| +...+..+..++...|++++|...+.++ ...|+.. ..+.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 33444566689999999999998742 234 4556777888899999999999999887 4455544 44555556676
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010496 397 KGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 397 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 449 (509)
.| +.|...++++.+..-..+..+..+...|.-.|+.+.+..+ +++.+.+.
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 66 4788888887775444333344477778888888888777 88877653
No 57
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.41 E-value=1.7e-10 Score=109.80 Aligned_cols=231 Identities=19% Similarity=0.233 Sum_probs=158.5
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHc-----C-CCCcHh-HHHHHHHHHHhcCCHHHHHHHHHhccC-------C--
Q 010496 216 VTIISVLNACANVGTLGIGLWIHRYVLKQ-----D-FKDNVK-VCNTLIDLYSRCGCIEFARQVFQRMHK-------R-- 279 (509)
Q Consensus 216 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~-- 279 (509)
.++..+...|...|+++.|..+++..++. | ..|... ..+.+...|...+++++|..+|+++.. +
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34444666666666666666666665543 1 122222 233466677777777777777766642 1
Q ss_pred --ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC-----CC-CCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcC--C
Q 010496 280 --TLVSWNSIIVGFAVNGFVGEALEYFNSMQKE-----GF-KPDGV-SFTGALTACSHAGLIEDGLRYFDIMKKIYR--V 348 (509)
Q Consensus 280 --~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-----g~-~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~--~ 348 (509)
-..+++.|..+|.+.|++++|..+++...+. |. .|... .++.+...|+..+++++|..+++...+... .
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1235666666777777777776666655431 11 22222 355667778899999999999988765333 1
Q ss_pred CCC----HHHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--
Q 010496 349 SPR----IEHYGCIVDLYSRAGRLEDALNVVENM---------PMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVD-- 412 (509)
Q Consensus 349 ~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 412 (509)
.++ ..+++.|...|...|++.+|.++++++ +..+. ...++.|...|.+.+++.+|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 222 457899999999999999999999886 11222 44788889999999999999999988665
Q ss_pred --cCCCCCc---hHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 413 --LDPGVDS---NYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 413 --~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.+|..+. +|..|+.+|.+.|++++|.++.+.+..
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4555443 589999999999999999999998863
No 58
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.39 E-value=4.7e-11 Score=102.86 Aligned_cols=223 Identities=17% Similarity=0.045 Sum_probs=132.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-ChhhHHHHHHHHHhCCC
Q 010496 220 SVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK--R-TLVSWNSIIVGFAVNGF 296 (509)
Q Consensus 220 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~ 296 (509)
.+.++|.+.|.+.+|.+.++..++. .|.+.||..|.++|.+..+...|+.+|.+..+ | |+....-+...+-..++
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~ 305 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQ 305 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHh
Confidence 4444555555555555555544443 23444455555555555555555555554442 2 22222223444445555
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010496 297 VGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVE 376 (509)
Q Consensus 297 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 376 (509)
.++|.++|+...+.. +.+......+...|.-.++.+.|..+|+++.+ .|. -+...|+.+.-+|.-.++++-++..|+
T Consensus 306 ~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 306 QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 566666666555541 22344444455555556666666666666662 333 344556666666666666666666665
Q ss_pred hC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 377 NM---PMKPN--EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 377 ~~---~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+. --.|+ ..+|..+.......|++..|.+.|+-++..++++...++.|+..-.+.|++++|..++......
T Consensus 383 RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 383 RALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 54 11233 3467777777778888888888888888888888888888888888889999988888877654
No 59
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=8.7e-09 Score=91.95 Aligned_cols=229 Identities=14% Similarity=0.092 Sum_probs=111.4
Q ss_pred CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHH
Q 010496 212 EPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNSII 288 (509)
Q Consensus 212 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~ 288 (509)
+-|......+..++...|+.++|...|++..-.+ +-+........-.+.+.|+++....+...+... ....|..-+
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA 307 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence 3345556666666666666666666666665543 222333333333344555555555544444322 222233333
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCC
Q 010496 289 VGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGR 367 (509)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~ 367 (509)
......+++..|+.+-++.+... +-+...|..-...+...|+.++|.-.|+... .+.| +..+|..|+.+|...|+
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq---~Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQ---MLAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHH---hcchhhHHHHHHHHHHHHhhch
Confidence 33344445555555555444421 1122233333334444555555555555544 2222 34455555555555555
Q ss_pred hHHH------------------------------------HHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHH
Q 010496 368 LEDA------------------------------------LNVVENM-PMKPNEV-VLGSLLAACRTKGDIILAERLMKY 409 (509)
Q Consensus 368 ~~~A------------------------------------~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~ 409 (509)
+.+| ..+++.. .++|+-. ..+.+...|...|..++++.++++
T Consensus 384 ~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 384 FKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 5554 4444332 3444432 444444555555666666666666
Q ss_pred HHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 410 LVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 410 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.+...++. .....|++.+...+.+.+|++.|.....
T Consensus 464 ~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 464 HLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 55554432 3455566666666666666665555433
No 60
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.36 E-value=4.1e-10 Score=109.31 Aligned_cols=271 Identities=13% Similarity=0.108 Sum_probs=173.7
Q ss_pred cccccccccCCCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHH
Q 010496 30 QISIQTNNSKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVC 109 (509)
Q Consensus 30 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~ 109 (509)
..++......|..||.+||.++|..||..|+.+.|- +|.-|.-+....+...++.++.+.... ++.+.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~A--nd~Enpk------- 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEA--NDAENPK------- 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccc--ccccCCC-------
Confidence 344445555677888888888888888888888877 888887777777777888888776666 6665554
Q ss_pred HhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCC--CCCHhHHHHHH
Q 010496 110 KLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMP--VRDAISWTALL 187 (509)
Q Consensus 110 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li 187 (509)
.|. +.+|..|..+|.+.||... |+...+ ....+...+...|--.....++..+. ......-...+
T Consensus 80 ----ep~-aDtyt~Ll~ayr~hGDli~----fe~veq----dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~i 146 (1088)
T KOG4318|consen 80 ----EPL-ADTYTNLLKAYRIHGDLIL----FEVVEQ----DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAI 146 (1088)
T ss_pred ----CCc-hhHHHHHHHHHHhccchHH----HHHHHH----HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHH
Confidence 355 7788888888888888665 222221 23334455556666555555555432 11112223345
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 010496 188 NGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIE 267 (509)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 267 (509)
......|-|+.+++++..+..... +. ++..+++-+.... ...+++.......--.++..+|..++++-...|+.+
T Consensus 147 lllv~eglwaqllkll~~~Pvsa~--~~-p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 147 LLLVLEGLWAQLLKLLAKVPVSAW--NA-PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHHHhhCCcccc--cc-hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchh
Confidence 556667778888887766643311 11 1111244433332 223333333322211588888888888888889999
Q ss_pred HHHHHHHhccCCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 010496 268 FARQVFQRMHKRT----LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGL 331 (509)
Q Consensus 268 ~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 331 (509)
.|..++.+|.+.. ..-|..++-+ .++...++.+++-|.+.|+.|+..|+...+..+...|.
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 9998888888653 3334444433 77788888888888888889998888877777776444
No 61
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.36 E-value=6.2e-10 Score=98.75 Aligned_cols=192 Identities=17% Similarity=0.118 Sum_probs=101.3
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 010496 180 AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDL 259 (509)
Q Consensus 180 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (509)
...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4455566666666777777777776666542 2234555566666666667777776666666654 4445555556666
Q ss_pred HHhcCCHHHHHHHHHhccCC-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 010496 260 YSRCGCIEFARQVFQRMHKR-----TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIED 334 (509)
Q Consensus 260 ~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 334 (509)
+...|++++|.+.++++... ....+..+...+...|++++|...+.+..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 66666666666666655421 12234444445555555555555555554431 1123344444445555555555
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHH
Q 010496 335 GLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVE 376 (509)
Q Consensus 335 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 376 (509)
|...+++..+. .+.+...+..++..+...|+.++|..+.+
T Consensus 188 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 188 ARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 55555555421 12233333344444444444444444433
No 62
>PF13041 PPR_2: PPR repeat family
Probab=99.36 E-value=1.4e-12 Score=83.50 Aligned_cols=50 Identities=28% Similarity=0.523 Sum_probs=48.5
Q ss_pred CCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcC
Q 010496 43 NPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCAD 92 (509)
Q Consensus 43 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 92 (509)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999999864
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.35 E-value=1.2e-10 Score=100.49 Aligned_cols=230 Identities=15% Similarity=0.094 Sum_probs=199.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYS 261 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (509)
--+.+.++|.+.|.+.+|.+.|+...+. .|-+.||..|-++|.+..++..|+.++.+-++.- |.++.........+.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~f-P~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF-PFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC-CchhhhhhhhHHHHH
Confidence 3467889999999999999999998885 6788899999999999999999999999988874 677777778889999
Q ss_pred hcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010496 262 RCGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRY 338 (509)
Q Consensus 262 ~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 338 (509)
..++.++|.++|+.+.+. ++.....+...|.-.++.+-|+..|++++..|+. +...|+.+.-+|.-.+++|-+..-
T Consensus 302 am~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999998754 5566666777888999999999999999999976 788899999999999999999999
Q ss_pred HHHhHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010496 339 FDIMKKIYRVSPR--IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLD 414 (509)
Q Consensus 339 ~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 414 (509)
|.+.... .-.|+ ..+|..|.......|++.-|.+.|+-. ...| +...++.|.-.-.+.|++++|..++..+....
T Consensus 381 f~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~ 459 (478)
T KOG1129|consen 381 FQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVM 459 (478)
T ss_pred HHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhC
Confidence 9998842 33343 567888888889999999999999886 3333 56799999998999999999999999999988
Q ss_pred CC
Q 010496 415 PG 416 (509)
Q Consensus 415 ~~ 416 (509)
|.
T Consensus 460 P~ 461 (478)
T KOG1129|consen 460 PD 461 (478)
T ss_pred cc
Confidence 87
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.34 E-value=2.6e-09 Score=102.61 Aligned_cols=128 Identities=17% Similarity=0.117 Sum_probs=107.9
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 010496 319 FTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRT 396 (509)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~ 396 (509)
|......+.+.+..++|...+.++.+ -.+.....|......+...|..++|.+.|... -+.|+ +....++...+.+
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 33445567788888999888888874 33446777888888889999999999998776 67775 5589999999999
Q ss_pred cCCHHHHHH--HHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 397 KGDIILAER--LMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 397 ~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
.|+..-|.. ++..+++.+|.++.+|..++..+.+.|+.++|.+.|....+..
T Consensus 731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 999888888 9999999999999999999999999999999999999887653
No 65
>PRK12370 invasion protein regulator; Provisional
Probab=99.31 E-value=6.4e-10 Score=110.97 Aligned_cols=257 Identities=11% Similarity=-0.006 Sum_probs=180.4
Q ss_pred ChHHHHHHHHHHHh-----CCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHH---------cCChHHHHHHHHHHHHcC
Q 010496 148 SSFTWNAMIDGYMR-----RGDIESAVRMFDEMPVR---DAISWTALLNGFVK---------RGYFEEALECFREMQISG 210 (509)
Q Consensus 148 ~~~~~~~l~~~~~~-----~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~---------~~~~~~A~~~~~~m~~~~ 210 (509)
+...|...+.+... .+++++|...|++.... +...|..+..++.. .+++++|...+++..+.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld 334 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD 334 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC
Confidence 44555555554321 23467899999877654 45666666665542 244789999999999864
Q ss_pred CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCh---hhHHHH
Q 010496 211 VEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTL---VSWNSI 287 (509)
Q Consensus 211 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l 287 (509)
+-+...+..+...+...|++++|...++++++.+ |.+...+..+..++...|++++|...++++.+.++ ..+..+
T Consensus 335 -P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~ 412 (553)
T PRK12370 335 -HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITK 412 (553)
T ss_pred -CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHH
Confidence 3467778888888899999999999999999987 67788899999999999999999999999875333 233444
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhc
Q 010496 288 IVGFAVNGFVGEALEYFNSMQKEGFKP-DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRA 365 (509)
Q Consensus 288 ~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 365 (509)
+..+...|++++|+..++++.... .| +...+..+..++...|+.++|...++++.. ..| +....+.+...|...
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST---QEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh---ccchhHHHHHHHHHHHhcc
Confidence 555677899999999999988753 34 344566677788899999999999998773 234 344456666677777
Q ss_pred CChHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010496 366 GRLEDALNVVENM----PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDP 415 (509)
Q Consensus 366 g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 415 (509)
| ++|...++.+ ...+....+..+ .+.-.|+-+.+... +++.+.+.
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhccch
Confidence 7 4666666555 233333333333 34455665555554 77766543
No 66
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.31 E-value=1.6e-09 Score=98.66 Aligned_cols=290 Identities=14% Similarity=0.110 Sum_probs=206.0
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCC--CC-HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHc
Q 010496 152 WNAMIDGYMRRGDIESAVRMFDEMPV--RD-AISWTALLNGFVKRGYFEEALECFREMQISGVEPD-YVTIISVLNACAN 227 (509)
Q Consensus 152 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~ 227 (509)
+-...+-|.+.|.+++|++.+..... |+ +..|....-+|...|+|+++.+.-.+.++ +.|+ ...+..-..++-.
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALE--l~P~Y~KAl~RRA~A~E~ 195 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALE--LNPDYVKALLRRASAHEQ 195 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcHHHHHHHHHHHHHHh
Confidence 34455668899999999999998764 45 77889999999999999999998888877 4665 4556666778888
Q ss_pred cCCHHHHHHHHHHHH-HcC-----------------------------CCCcHhHHHHHHHHHHhc------------C-
Q 010496 228 VGTLGIGLWIHRYVL-KQD-----------------------------FKDNVKVCNTLIDLYSRC------------G- 264 (509)
Q Consensus 228 ~~~~~~a~~~~~~~~-~~~-----------------------------~~~~~~~~~~l~~~~~~~------------g- 264 (509)
.|++++|+.=..-.. -.| -+|... -...|..|... +
T Consensus 196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lP-S~~fi~syf~sF~~~~~~~~~~~~~ 274 (606)
T KOG0547|consen 196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLP-SATFIASYFGSFHADPKPLFDNKSD 274 (606)
T ss_pred hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCC-cHHHHHHHHhhccccccccccCCCc
Confidence 999988764222111 000 111110 11112222210 0
Q ss_pred ----CHHHHHHHHHhccC--------------------C-----Chh------hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010496 265 ----CIEFARQVFQRMHK--------------------R-----TLV------SWNSIIVGFAVNGFVGEALEYFNSMQK 309 (509)
Q Consensus 265 ----~~~~a~~~~~~~~~--------------------~-----~~~------~~~~l~~~~~~~~~~~~A~~~~~~m~~ 309 (509)
...++.+.+..-.+ . |.. +......-+.-.|+.-.|..-|+..+.
T Consensus 275 ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~ 354 (606)
T KOG0547|consen 275 KSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIK 354 (606)
T ss_pred cchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHh
Confidence 01122222111110 0 111 111111223346888899999999998
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHH
Q 010496 310 EGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVV 386 (509)
Q Consensus 310 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 386 (509)
....++. .|..+...|....+.++.+..|....+ +.| +..+|..-.+.+.-.+++++|..-|++. .+.| +...
T Consensus 355 l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~---ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~ 430 (606)
T KOG0547|consen 355 LDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAED---LDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYA 430 (606)
T ss_pred cCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHh---cCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHH
Confidence 7544333 277777789999999999999999984 334 5677888888888899999999999887 6777 4668
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 387 LGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
|..+..+..+.+++++++..|+..++..|..+.+|+..+..+..++++++|.+.|+..++..
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 88888888899999999999999999999999999999999999999999999999988753
No 67
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=6.9e-08 Score=90.31 Aligned_cols=382 Identities=13% Similarity=0.079 Sum_probs=229.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCC-CCCchHHHHHHHHHHH
Q 010496 51 SISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGL-DRNNVMVGTALLDMYA 129 (509)
Q Consensus 51 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 129 (509)
=+.-+...|++++|+....++...+ +-+...+..=+-++... +.++.|..+.+ ..+. ...+... .--+-+..
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~--~ky~~ALk~ik---k~~~~~~~~~~~-fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQL--DKYEDALKLIK---KNGALLVINSFF-FEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhh--hHHHHHHHHHH---hcchhhhcchhh-HHHHHHHH
Confidence 4566677889999999999998854 22344444444455555 77777764432 2221 1111111 12233345
Q ss_pred hcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC-------------------------------
Q 010496 130 KFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVR------------------------------- 178 (509)
Q Consensus 130 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------------------------------- 178 (509)
+.+..|+|+..++-....+..+...-...+-+.|++++|+++|+.+.+.
T Consensus 91 rlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v 170 (652)
T KOG2376|consen 91 RLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEV 170 (652)
T ss_pred HcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCC
Confidence 6788999999988666666667777778888899999999998877311
Q ss_pred CHhHH---HHHHHHHHHcCChHHHHHHHHHHHHcC-------CCCCHh-------HHHHHHHHHHccCCHHHHHHHHHHH
Q 010496 179 DAISW---TALLNGFVKRGYFEEALECFREMQISG-------VEPDYV-------TIISVLNACANVGTLGIGLWIHRYV 241 (509)
Q Consensus 179 ~~~~~---~~li~~~~~~~~~~~A~~~~~~m~~~~-------~~p~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~ 241 (509)
...+| ......+...|++.+|+++++.....+ -.-+.. .-.-+.-++...|+..+|.+++...
T Consensus 171 ~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 171 PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDI 250 (652)
T ss_pred CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 11122 234456677899999999998883221 011111 1123444567889999999999998
Q ss_pred HHcCCCCcHhH----HHHHHHHHHhcC---------------------------------------------CHHHHHHH
Q 010496 242 LKQDFKDNVKV----CNTLIDLYSRCG---------------------------------------------CIEFARQV 272 (509)
Q Consensus 242 ~~~~~~~~~~~----~~~l~~~~~~~g---------------------------------------------~~~~a~~~ 272 (509)
++.. ++|... .|.|+.+-.... ..+.+.++
T Consensus 251 i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~ 329 (652)
T KOG2376|consen 251 IKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVREL 329 (652)
T ss_pred HHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 8876 444422 222221111110 00111111
Q ss_pred HHhccCC-ChhhHHHHHHHHH--hCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHH--------H
Q 010496 273 FQRMHKR-TLVSWNSIIVGFA--VNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFD--------I 341 (509)
Q Consensus 273 ~~~~~~~-~~~~~~~l~~~~~--~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~--------~ 341 (509)
....... ....+.+++.... +...+..|.+++....+....-........+......|+++.|.+++. .
T Consensus 330 ~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss 409 (652)
T KOG2376|consen 330 SASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSS 409 (652)
T ss_pred HHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhh
Confidence 1111101 1123333333322 223466777777776654222223445556667788999999999999 4
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 342 MKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM--------PMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 342 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
+. ..+..|. +...++..+.+.++.+.|..++.+. ...+. ..++..++..-.+.|+.++|..+++++.+
T Consensus 410 ~~-~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k 486 (652)
T KOG2376|consen 410 IL-EAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVK 486 (652)
T ss_pred hh-hhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHH
Confidence 54 3344444 4455677788877776666666554 11221 22444444555678999999999999999
Q ss_pred cCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010496 413 LDPGVDSNYVLLANMYAAVGKWDGAGKIRRTM 444 (509)
Q Consensus 413 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 444 (509)
..|.+..+...++.+|++. +.+.|..+-+.+
T Consensus 487 ~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 487 FNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred hCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999999999887 677777765544
No 68
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.26 E-value=1.3e-07 Score=89.25 Aligned_cols=391 Identities=15% Similarity=0.155 Sum_probs=245.1
Q ss_pred ccchHHHHHHHHcCCChhHHHHHHHHHhhC-CCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHH
Q 010496 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLH-GTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTA 123 (509)
Q Consensus 45 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 123 (509)
+..|-..+....++|+...-...|++.+.. -+..-...|-..+...... +-.+.+..+++..++.. +...+-
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~--~lPets~rvyrRYLk~~-----P~~~ee 174 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESH--GLPETSIRVYRRYLKVA-----PEAREE 174 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhC--CChHHHHHHHHHHHhcC-----HHHHHH
Confidence 345666677777788888888888776543 1112233465566655555 66667777777777663 334566
Q ss_pred HHHHHHhcCCchHHHHHHHhcCC--------------------------C--------------------C--hHHHHHH
Q 010496 124 LLDMYAKFGRMDLATVVFDAMRV--------------------------K--------------------S--SFTWNAM 155 (509)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~~--------------------------~--------------------~--~~~~~~l 155 (509)
-+..+++.+++++|.+.+..+.. | | ...|.+|
T Consensus 175 yie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SL 254 (835)
T KOG2047|consen 175 YIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSL 254 (835)
T ss_pred HHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHH
Confidence 66777777777777777766641 0 1 1346778
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCC---------------------------------------------------------
Q 010496 156 IDGYMRRGDIESAVRMFDEMPVR--------------------------------------------------------- 178 (509)
Q Consensus 156 ~~~~~~~~~~~~A~~~~~~~~~~--------------------------------------------------------- 178 (509)
.+.|.+.|.+++|.++|++....
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 88888899999998888765411
Q ss_pred -------------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC------HhHHHHHHHHHHccCCHHHHHHHHH
Q 010496 179 -------------DAISWTALLNGFVKRGYFEEALECFREMQISGVEPD------YVTIISVLNACANVGTLGIGLWIHR 239 (509)
Q Consensus 179 -------------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~------~~~~~~l~~~~~~~~~~~~a~~~~~ 239 (509)
++..|.. +.-+..|+..+-...|.+..+. +.|. ...|..+.+.|-..|+++.|..+|+
T Consensus 335 ~~lNsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hHHHHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHH
Confidence 1111111 1111235556666666666554 2331 2467788889999999999999999
Q ss_pred HHHHcCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHHhccC-C--------------------ChhhHHHHHHHHHhCC
Q 010496 240 YVLKQDFKDN---VKVCNTLIDLYSRCGCIEFARQVFQRMHK-R--------------------TLVSWNSIIVGFAVNG 295 (509)
Q Consensus 240 ~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~--------------------~~~~~~~l~~~~~~~~ 295 (509)
+..+...+.- ..+|......-.+..+++.|+++.++..- | +...|...+...-..|
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~g 491 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLG 491 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhc
Confidence 9998764433 56788888888889999999999887641 0 2224544454444455
Q ss_pred ChHHHHHHHHHHHHCCC----------------------------------CCCHH-HHHHHHHHHh---ccCCHHHHHH
Q 010496 296 FVGEALEYFNSMQKEGF----------------------------------KPDGV-SFTGALTACS---HAGLIEDGLR 337 (509)
Q Consensus 296 ~~~~A~~~~~~m~~~g~----------------------------------~p~~~-~~~~li~~~~---~~~~~~~a~~ 337 (509)
-++....+|+++++..+ .|+.. .|+..+.-+. ....++.|..
T Consensus 492 tfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 492 TFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred cHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 55555555555544321 23322 2222222222 2246788999
Q ss_pred HHHHhHHhcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010496 338 YFDIMKKIYRVSPRIEH--YGCIVDLYSRAGRLEDALNVVENM--PMKPN--EVVLGSLLAACRTKGDIILAERLMKYLV 411 (509)
Q Consensus 338 ~~~~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 411 (509)
+|++..+ +.+|...- |......=-+.|-...|+.++++. ++++. ...|+..|.-....=.+.....+|++++
T Consensus 572 LFEqaL~--~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaI 649 (835)
T KOG2047|consen 572 LFEQALD--GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAI 649 (835)
T ss_pred HHHHHHh--cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 9999885 66664322 222222233568888889999887 34443 2367777765444444556678899998
Q ss_pred hcCCCCCc--hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 412 DLDPGVDS--NYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 412 ~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+.-|+... .....+..-.+.|..+.|..++..-.+-
T Consensus 650 e~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~ 687 (835)
T KOG2047|consen 650 ESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI 687 (835)
T ss_pred HhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence 88776332 3556667778899999999999776554
No 69
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.25 E-value=2e-07 Score=88.11 Aligned_cols=381 Identities=14% Similarity=0.136 Sum_probs=247.1
Q ss_pred chHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCc--------------c------chhHHHHHHH
Q 010496 47 QWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPS--------------Q------CLFLGAMIHG 106 (509)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--------------~------~~~~a~~~~~ 106 (509)
-|.+|...|.+.|.+++|.++|++..+. ..++.-|..+..+|+.... + +++....-++
T Consensus 250 Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e 327 (835)
T KOG2047|consen 250 LWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE 327 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence 5899999999999999999999998874 3456667777666654310 1 1111122222
Q ss_pred HHHHhC----------CCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC---C------ChHHHHHHHHHHHhCCCHHH
Q 010496 107 LVCKLG----------LDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV---K------SSFTWNAMIDGYMRRGDIES 167 (509)
Q Consensus 107 ~~~~~~----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~------~~~~~~~l~~~~~~~~~~~~ 167 (509)
.+.... -.|.|...|..-+..+ .|+..+-...+.+... | -...|..+...|-..|+++.
T Consensus 328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~ 405 (835)
T KOG2047|consen 328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDD 405 (835)
T ss_pred HHHhccchHHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHH
Confidence 222221 1233444444443332 4566666666666542 1 23468888999999999999
Q ss_pred HHHHHhcCCCCC-------HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-----------C------CHhHHHHHHH
Q 010496 168 AVRMFDEMPVRD-------AISWTALLNGFVKRGYFEEALECFREMQISGVE-----------P------DYVTIISVLN 223 (509)
Q Consensus 168 A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-----------p------~~~~~~~l~~ 223 (509)
|..+|++..+.+ ..+|......-.+..+++.|+++++......-. + +...|...+.
T Consensus 406 aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~D 485 (835)
T KOG2047|consen 406 ARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYAD 485 (835)
T ss_pred HHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHH
Confidence 999999887542 345666667777888999999998877542111 1 1123444455
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC----CCh-hhHHHHHHHHHh---CC
Q 010496 224 ACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK----RTL-VSWNSIIVGFAV---NG 295 (509)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~l~~~~~~---~~ 295 (509)
.--..|-++....+|+.+++..+. ++.+.-.....+-...-++++.++|++-.. |++ ..|+..+.-+.+ ..
T Consensus 486 leEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~ 564 (835)
T KOG2047|consen 486 LEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGT 564 (835)
T ss_pred HHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCC
Confidence 555678889999999999988743 344433444455666778999999998763 333 467766665554 34
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--hccCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHhcCChHHH
Q 010496 296 FVGEALEYFNSMQKEGFKPDGVSFTGALTAC--SHAGLIEDGLRYFDIMKKIYRVSPR--IEHYGCIVDLYSRAGRLEDA 371 (509)
Q Consensus 296 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~--~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A 371 (509)
..+.|..+|++.++ |.+|...-+..|+-+- -+.|....|+.+++++.. ++++. ...|+..|.-....=.+...
T Consensus 565 klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~T 641 (835)
T KOG2047|consen 565 KLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRT 641 (835)
T ss_pred CHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCccc
Confidence 68999999999999 6777655443343322 245888999999999874 55553 56788877655544444444
Q ss_pred HHHHHhC-CCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHHcCCch
Q 010496 372 LNVVENM-PMKPNEVV---LGSLLAACRTKGDIILAERLMKYLVDLDPG--VDSNYVLLANMYAAVGKWD 435 (509)
Q Consensus 372 ~~~~~~~-~~~p~~~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 435 (509)
..++++. ..-|+... ...+...-.+.|.++.|..+|....+.-+. +...|...=..-.+.|+-+
T Consensus 642 R~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGned 711 (835)
T KOG2047|consen 642 REIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNED 711 (835)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHH
Confidence 4555544 23344432 333344567889999999999988885443 5556777777788888843
No 70
>PF13041 PPR_2: PPR repeat family
Probab=99.23 E-value=4e-11 Score=76.67 Aligned_cols=50 Identities=30% Similarity=0.595 Sum_probs=41.6
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010496 279 RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSH 328 (509)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 328 (509)
||+.+||+++.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 57788888888888888888888888888888888888888888888764
No 71
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=7.4e-09 Score=96.15 Aligned_cols=275 Identities=14% Similarity=0.086 Sum_probs=206.5
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHH
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPV---RDAISWTALLNGFV 191 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 191 (509)
..+.....+-+...+++.+..++++.+.+. ....+..-|..+...|+..+-..+=.++.. ..+.+|-++..-|.
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHH
Confidence 777777788888889999999999888754 344556666677777776555554444432 26778888888888
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 010496 192 KRGYFEEALECFREMQISGVEPD-YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFAR 270 (509)
Q Consensus 192 ~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 270 (509)
-.|+.++|.++|.+.... .|. ...|......+.-.|..++|...+..+-+.= +...--+.-+.--|.+.++.+.|.
T Consensus 324 ~i~k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe 400 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAE 400 (611)
T ss_pred HhcCcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHH
Confidence 889999999998887653 343 5677888888888899999998888777652 222222333455577888899999
Q ss_pred HHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC----C--CCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010496 271 QVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKE----G--FKPDGVSFTGALTACSHAGLIEDGLRYFDI 341 (509)
Q Consensus 271 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 341 (509)
++|.... ..|+...+-+.-..-..+.+.+|..+|+..+.. + ..-...+++.|..+|.+.+.+++|+..+++
T Consensus 401 ~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~ 480 (611)
T KOG1173|consen 401 KFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQK 480 (611)
T ss_pred HHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHH
Confidence 9988765 347778888877777788889999888877631 0 112455788899999999999999999999
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc
Q 010496 342 MKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEVVLGSLLAACRTK 397 (509)
Q Consensus 342 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~ 397 (509)
... -.+.+..++.++.-.|...|+++.|.+.|.+. .++|+..+...++..+...
T Consensus 481 aL~--l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~ 535 (611)
T KOG1173|consen 481 ALL--LSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED 535 (611)
T ss_pred HHH--cCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 984 33557888999999999999999999999876 7889888877777765543
No 72
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.22 E-value=9e-08 Score=81.98 Aligned_cols=387 Identities=14% Similarity=0.051 Sum_probs=251.7
Q ss_pred chHHHHHHHHcCCChhHHHHHHHHHhhCCCCC-CcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHH
Q 010496 47 QWTSSISRHCRSGRIAEAALEFTRMTLHGTNP-NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALL 125 (509)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 125 (509)
-+.+.+..+.+..++..|++++..-.+. .| +....+.+..++-.. .++..|...++++......-..... .-.
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er--~p~~rAgLSlLgyCYY~~--Q~f~~AA~CYeQL~ql~P~~~qYrl--Y~A 85 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELER--SPRSRAGLSLLGYCYYRL--QEFALAAECYEQLGQLHPELEQYRL--YQA 85 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhChHHHHHHH--HHH
Confidence 4778888889999999999999988775 44 556666676777777 8999999999999888532221122 235
Q ss_pred HHHHhcCCchHHHHHHHhcCCCC-hHHHHHHH--HHHHhCCCHHHHHHHHhcCCC-CCHhHHHHHHHHHHHcCChHHHHH
Q 010496 126 DMYAKFGRMDLATVVFDAMRVKS-SFTWNAMI--DGYMRRGDIESAVRMFDEMPV-RDAISWTALLNGFVKRGYFEEALE 201 (509)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~l~--~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~A~~ 201 (509)
..+.+.+.+..|+++...|...+ ...-..-+ ...-..+++..+..++++.+. .+..+.+.......+.|+++.|.+
T Consensus 86 QSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 86 QSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred HHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHH
Confidence 66778899999999999998742 21111112 223467899999999999984 577777888888899999999999
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-------------cH---------------hHH
Q 010496 202 CFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKD-------------NV---------------KVC 253 (509)
Q Consensus 202 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~---------------~~~ 253 (509)
-|+...+-+-.-....|+..+ +..+.++++.|+++..+++++|+.. |+ ..+
T Consensus 166 kFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAf 244 (459)
T KOG4340|consen 166 KFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAF 244 (459)
T ss_pred HHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHh
Confidence 999988765343455666544 5567899999999999999876532 11 123
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCC-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010496 254 NTLIDLYSRCGCIEFARQVFQRMHKR-----TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSH 328 (509)
Q Consensus 254 ~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 328 (509)
|.-...+.+.|+++.|.+.+-.|..+ |++|...+.-.= ..+++.+..+-+.-+..... ....||..++-.||+
T Consensus 245 NLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCK 322 (459)
T KOG4340|consen 245 NLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCK 322 (459)
T ss_pred hhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhh
Confidence 33444556788999999999999843 677766554322 23445555555555555433 346788888889999
Q ss_pred cCCHHHHHHHHHHhHHhcCCC-CCHHHHHHHHHHHH-hcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCC---HH
Q 010496 329 AGLIEDGLRYFDIMKKIYRVS-PRIEHYGCIVDLYS-RAGRLEDALNVVENMPMKP--NEVVLGSLLAACRTKGD---II 401 (509)
Q Consensus 329 ~~~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~-~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~---~~ 401 (509)
..-++.|-+++.+-. ..... .+...|+ |++++. .....++|++-++.+...- .......-+..-...++ ..
T Consensus 323 Neyf~lAADvLAEn~-~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R 400 (459)
T KOG4340|consen 323 NEYFDLAADVLAENA-HLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIR 400 (459)
T ss_pred hHHHhHHHHHHhhCc-chhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 998999888876544 11111 2333344 344444 3456677776665541000 00011111111111111 22
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 402 LAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 402 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
.+++-++..++.- -.+...-++.|++..++..+.++|..-.+.
T Consensus 401 ~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 401 KAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 2233333333321 124566777889999999999999876553
No 73
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=1.4e-08 Score=92.80 Aligned_cols=226 Identities=11% Similarity=-0.014 Sum_probs=147.2
Q ss_pred CChHHHHHHHHHHHHcC-CCCC--HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH
Q 010496 194 GYFEEALECFREMQISG-VEPD--YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFAR 270 (509)
Q Consensus 194 ~~~~~A~~~~~~m~~~~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 270 (509)
++.+.++..+.++.... ..|+ ...|..+...+...|+.++|...|++.++.. |.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45666777777776532 1222 3446666777788888888888888888876 667788888888888888888888
Q ss_pred HHHHhccC--C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 010496 271 QVFQRMHK--R-TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYR 347 (509)
Q Consensus 271 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 347 (509)
..|++..+ | +..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|...+++... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 88888753 2 4567777888888888888998888888875 44433222222223456788888888876553 2
Q ss_pred CCCCHHHHHHHHHHHHhcCChHH--HHHHHHhC-C----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-C
Q 010496 348 VSPRIEHYGCIVDLYSRAGRLED--ALNVVENM-P----MKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV-D 418 (509)
Q Consensus 348 ~~~~~~~~~~li~~~~~~g~~~~--A~~~~~~~-~----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~ 418 (509)
..++... ..+.. ...|+..+ +.+.+.+. . ..| ....|..+...+...|++++|...|+++++.+|.+ .
T Consensus 195 ~~~~~~~-~~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~ 271 (296)
T PRK11189 195 LDKEQWG-WNIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFV 271 (296)
T ss_pred CCccccH-HHHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHH
Confidence 2333222 12222 23444433 33333221 1 112 23578888999999999999999999999988753 3
Q ss_pred chHHHHHHH
Q 010496 419 SNYVLLANM 427 (509)
Q Consensus 419 ~~~~~l~~~ 427 (509)
..-..++..
T Consensus 272 e~~~~~~e~ 280 (296)
T PRK11189 272 EHRYALLEL 280 (296)
T ss_pred HHHHHHHHH
Confidence 333334433
No 74
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.20 E-value=6.3e-08 Score=93.64 Aligned_cols=283 Identities=14% Similarity=0.065 Sum_probs=153.5
Q ss_pred HHHhCCCHHHHHHHHhcCCCC--C-HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc-----C
Q 010496 158 GYMRRGDIESAVRMFDEMPVR--D-AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANV-----G 229 (509)
Q Consensus 158 ~~~~~~~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~-----~ 229 (509)
.+...|++++|++.++.-... | ..........+.+.|+.++|..+|..+...+ +.+..-|..+..+..-. .
T Consensus 13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~~ 91 (517)
T PF12569_consen 13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSDE 91 (517)
T ss_pred HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccccc
Confidence 344555555555555443322 2 2233444555566666666666666665543 22222333333333111 1
Q ss_pred CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH-HHHHHHHhccCCCh-hhHHHHHHHHHhCCChHHHHHHHHHH
Q 010496 230 TLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIE-FARQVFQRMHKRTL-VSWNSIIVGFAVNGFVGEALEYFNSM 307 (509)
Q Consensus 230 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m 307 (509)
+.+...++++++...- |.......+.-.+.....+. .+..++..+..+++ .+|+.+-..|.......-..+++...
T Consensus 92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~ 169 (517)
T PF12569_consen 92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEY 169 (517)
T ss_pred cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 3444455555554432 22222211111111111121 22233333333332 34444444444444444444444443
Q ss_pred HHC--------------CCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHH
Q 010496 308 QKE--------------GFKPDG--VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLED 370 (509)
Q Consensus 308 ~~~--------------g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~ 370 (509)
... .-+|.. .++..+...|...|++++|..++++..+ ..|+ +..|..-...|.+.|++.+
T Consensus 170 ~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~---htPt~~ely~~KarilKh~G~~~~ 246 (517)
T PF12569_consen 170 VNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE---HTPTLVELYMTKARILKHAGDLKE 246 (517)
T ss_pred HHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh---cCCCcHHHHHHHHHHHHHCCCHHH
Confidence 321 113333 3455666777888888888888888883 2454 7778888888888899998
Q ss_pred HHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------h--HHHHHHHHHHcCCchHHHH
Q 010496 371 ALNVVENMP-MKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS-------N--YVLLANMYAAVGKWDGAGK 439 (509)
Q Consensus 371 A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~--~~~l~~~~~~~g~~~~A~~ 439 (509)
|.+.++... +.+ |...-+..+..+.+.|++++|.+++....+.+.++.. . ....+.+|.+.|++..|++
T Consensus 247 Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk 326 (517)
T PF12569_consen 247 AAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALK 326 (517)
T ss_pred HHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 888888873 333 5556666677788888999998888887665532111 1 2456677888888888888
Q ss_pred HHHHHHh
Q 010496 440 IRRTMKG 446 (509)
Q Consensus 440 ~~~~m~~ 446 (509)
.|..+.+
T Consensus 327 ~~~~v~k 333 (517)
T PF12569_consen 327 RFHAVLK 333 (517)
T ss_pred HHHHHHH
Confidence 7766654
No 75
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.20 E-value=1.3e-08 Score=97.15 Aligned_cols=237 Identities=15% Similarity=0.152 Sum_probs=143.4
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCC----------CCHh-HHHHHHHHHHHcCChHHHHHHHHHHHHc-----C-CCCC
Q 010496 152 WNAMIDGYMRRGDIESAVRMFDEMPV----------RDAI-SWTALLNGFVKRGYFEEALECFREMQIS-----G-VEPD 214 (509)
Q Consensus 152 ~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~-----~-~~p~ 214 (509)
...+...|...|+++.|+.+++...+ +... ..+.+...|...+++.+|..+|+++... | ..|.
T Consensus 202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~ 281 (508)
T KOG1840|consen 202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA 281 (508)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence 33456666666666666666654432 1222 2345778889999999999999998653 2 1222
Q ss_pred -HhHHHHHHHHHHccCCHHHHHHHHHHHHHc-----CC-CCc-HhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHH
Q 010496 215 -YVTIISVLNACANVGTLGIGLWIHRYVLKQ-----DF-KDN-VKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNS 286 (509)
Q Consensus 215 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 286 (509)
..++..|..+|.+.|++++|..+++.+.+. +. .+. ...++.++..++..+++++|..+++..
T Consensus 282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~a---------- 351 (508)
T KOG1840|consen 282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKA---------- 351 (508)
T ss_pred HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHH----------
Confidence 345666777788888888887777765542 10 111 122444455555555555555554422
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc----C-CCC-CHHHHHHHHH
Q 010496 287 IIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIY----R-VSP-RIEHYGCIVD 360 (509)
Q Consensus 287 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~li~ 360 (509)
.+++.........--..+++.|...|.+.|++++|.++++++.+.. + ..+ .-..++.+..
T Consensus 352 --------------l~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~ 417 (508)
T KOG1840|consen 352 --------------LKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAE 417 (508)
T ss_pred --------------HHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHH
Confidence 1111111110000112466677777777777777777777765422 1 112 1344666777
Q ss_pred HHHhcCChHHHHHHHHhC--------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 361 LYSRAGRLEDALNVVENM--------PMKPNE-VVLGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~--------~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
.|.+.+++.+|.++|.+. ...|+. .+|..|...|...|+++.|.++.+.+..
T Consensus 418 ~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 418 AYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 777888887777777665 134554 4899999999999999999999888874
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.20 E-value=6.1e-07 Score=85.06 Aligned_cols=393 Identities=13% Similarity=0.102 Sum_probs=226.9
Q ss_pred CCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcc-cHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCch
Q 010496 40 STVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHI-TFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNV 118 (509)
Q Consensus 40 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 118 (509)
+-..+.++|+.+.-.+....++++|++.|...... .||.. .|.-+--.-++. ++++.......+..+.. |.+.
T Consensus 70 ~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~Qm--Rd~~~~~~tr~~LLql~--~~~r 143 (700)
T KOG1156|consen 70 NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQM--RDYEGYLETRNQLLQLR--PSQR 143 (700)
T ss_pred cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHH--HhhhhHHHHHHHHHHhh--hhhH
Confidence 44456677887777777777888888888887763 44433 232111111233 56666666666666653 5556
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcCC-----CChHHHHHH------HHHHHhCCCHHHHHHHHhcCCCC--CHhHH-H
Q 010496 119 MVGTALLDMYAKFGRMDLATVVFDAMRV-----KSSFTWNAM------IDGYMRRGDIESAVRMFDEMPVR--DAISW-T 184 (509)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l------~~~~~~~~~~~~A~~~~~~~~~~--~~~~~-~ 184 (509)
..|...+.++.-.|+...|..+++...+ ++...+... .....+.|.++.|++.+...... |...+ .
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e 223 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEE 223 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhh
Confidence 6777777777777888888777776642 333333322 23455677777777777665543 32222 3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHH-HHHHHHccC-CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 010496 185 ALLNGFVKRGYFEEALECFREMQISGVEPDYVTIIS-VLNACANVG-TLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR 262 (509)
Q Consensus 185 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (509)
.-...+.+.++.++|..++..+... .||..-|.. +..++.+.. ..+....+|....+. .|....-..+--....
T Consensus 224 ~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~ 299 (700)
T KOG1156|consen 224 TKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLN 299 (700)
T ss_pred hHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhC
Confidence 4456677778888888888888775 455544443 344443222 233333555544443 1111111111111111
Q ss_pred cCCH-HHHHHHHHhccCC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHH----CC----------CCCCHH--HHHHHHH
Q 010496 263 CGCI-EFARQVFQRMHKR-TLVSWNSIIVGFAVNGFVGEALEYFNSMQK----EG----------FKPDGV--SFTGALT 324 (509)
Q Consensus 263 ~g~~-~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~----~g----------~~p~~~--~~~~li~ 324 (509)
..++ +...+++....+. -+.++..+.+.|-.....+-..++.-.+.. .| -+|... ++..++.
T Consensus 300 ~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laq 379 (700)
T KOG1156|consen 300 GEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQ 379 (700)
T ss_pred cchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHH
Confidence 1112 2222333333322 234444555444433322212222222221 11 144443 4556777
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHH
Q 010496 325 ACSHAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDALNVVENMP--MKPNEVVLGSLLAACRTKGDII 401 (509)
Q Consensus 325 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~ 401 (509)
.+-+.|+++.|..+++... +..|+ +..|..-.+.+...|++++|..++++.. ..||...-..-+.-..+.++.+
T Consensus 380 h~D~~g~~~~A~~yId~AI---dHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~ 456 (700)
T KOG1156|consen 380 HYDKLGDYEVALEYIDLAI---DHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIE 456 (700)
T ss_pred HHHHcccHHHHHHHHHHHh---ccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccH
Confidence 8889999999999999988 44666 5566667788999999999999999883 3455555546677778899999
Q ss_pred HHHHHHHHHHhcCCC---C---Cc-hHHHH--HHHHHHcCCchHHHHHHHHHH
Q 010496 402 LAERLMKYLVDLDPG---V---DS-NYVLL--ANMYAAVGKWDGAGKIRRTMK 445 (509)
Q Consensus 402 ~a~~~~~~~~~~~~~---~---~~-~~~~l--~~~~~~~g~~~~A~~~~~~m~ 445 (509)
+|.++....-+.+.. + .. .|..+ +.+|.+.|++..|++=|..+.
T Consensus 457 eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 457 EAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 999999988776642 1 11 13322 456888888888877665543
No 77
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.20 E-value=2.7e-07 Score=87.42 Aligned_cols=344 Identities=13% Similarity=0.070 Sum_probs=187.7
Q ss_pred cchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHH
Q 010496 96 QCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV---KSSFTWNAMIDGYMRRGDIESAVRMF 172 (509)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~ 172 (509)
|+.+.|..........+ +.+...|+.+.-.+-.-.++++|++.|..... .|...|..+.-.-++.|+++...+.-
T Consensus 55 g~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred cchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 55556655555555443 33355566666555556666666666665542 24455555544445555555555444
Q ss_pred hcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHhHHHHH------HHHHHccCCHHHHHHHHHHHH
Q 010496 173 DEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISG-VEPDYVTIISV------LNACANVGTLGIGLWIHRYVL 242 (509)
Q Consensus 173 ~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~~~~l------~~~~~~~~~~~~a~~~~~~~~ 242 (509)
..+.+. ....|..++.++.-.|+...|..++++..+.. -.|+...|.-. .......|.++.|.+.+..-.
T Consensus 133 ~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e 212 (700)
T KOG1156|consen 133 NQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNE 212 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhh
Confidence 433322 33445555555566666666666666655543 12443333221 122344555555555554433
Q ss_pred HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCh--hhHHHH-HHHHHhC-------------------------
Q 010496 243 KQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTL--VSWNSI-IVGFAVN------------------------- 294 (509)
Q Consensus 243 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~l-~~~~~~~------------------------- 294 (509)
..- ......-..-...+.+.+++++|..++..+..+++ ..|... ..++.+-
T Consensus 213 ~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~ 291 (700)
T KOG1156|consen 213 KQI-VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPR 291 (700)
T ss_pred hHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccch
Confidence 221 11122222334455555666666666655553322 222221 1111111
Q ss_pred ----------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH-------hc----------C
Q 010496 295 ----------GFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK-------IY----------R 347 (509)
Q Consensus 295 ----------~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~-------~~----------~ 347 (509)
.-.+..-.++..+.+.|+++--..+..+ |-.-...+ +++++.. .. .
T Consensus 292 Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SL---yk~p~k~~----~le~Lvt~y~~~L~~~~~f~~~D~~~~ 364 (700)
T KOG1156|consen 292 RLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSL---YKDPEKVA----FLEKLVTSYQHSLSGTGMFNFLDDGKQ 364 (700)
T ss_pred hccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHH---HhchhHhH----HHHHHHHHHHhhcccccCCCccccccc
Confidence 1122333445555556655432222222 21111111 2222211 00 0
Q ss_pred CCCCHH--HHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 010496 348 VSPRIE--HYGCIVDLYSRAGRLEDALNVVENM-PMKPNEV-VLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVL 423 (509)
Q Consensus 348 ~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 423 (509)
-+|+.. ++..++..|-+.|+++.|..+++.. .-.|+.. .|..-.+.+...|++++|...++++.+++-.|...-.-
T Consensus 365 E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsK 444 (700)
T KOG1156|consen 365 EPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSK 444 (700)
T ss_pred CCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHH
Confidence 145543 4456788889999999999999987 6667654 66666788999999999999999999987766443345
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCCC
Q 010496 424 LANMYAAVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 424 l~~~~~~~g~~~~A~~~~~~m~~~~~ 449 (509)
-+.-..++++.++|.++.....+.|.
T Consensus 445 cAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 445 CAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHccccHHHHHHHHHhhhccc
Confidence 66777899999999999999988875
No 78
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.19 E-value=4.4e-09 Score=96.14 Aligned_cols=212 Identities=16% Similarity=0.113 Sum_probs=154.1
Q ss_pred cCCHHHHHHHHHHHHHcC-CC--CcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHH
Q 010496 228 VGTLGIGLWIHRYVLKQD-FK--DNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEAL 301 (509)
Q Consensus 228 ~~~~~~a~~~~~~~~~~~-~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 301 (509)
.+..+.+..-+.+++... .. .....|..+...|...|++++|...|++..+ .+...|+.+...+...|++++|.
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 345677777888887643 11 2245688888999999999999999998864 36688999999999999999999
Q ss_pred HHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC--
Q 010496 302 EYFNSMQKEGFKP-DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-- 378 (509)
Q Consensus 302 ~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-- 378 (509)
..|++.++. .| +..++..+..++...|++++|.+.+++..+. .|+..........+...+++++|...+.+.
T Consensus 119 ~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 119 EAFDSVLEL--DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 999999985 44 4567778888889999999999999999843 343221222222345678899999999664
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 379 PMKPNEVVLGSLLAACRTKGDIILAERLMKYLV-------DLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 379 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
...|+...+ .+ .....|+...+ +.++.+. +..|....+|..++..+.+.|++++|+..|++..+.+
T Consensus 194 ~~~~~~~~~-~~--~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KLDKEQWGW-NI--VEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hCCccccHH-HH--HHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 233433322 22 23345554443 2444443 3344455689999999999999999999999998765
No 79
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.17 E-value=3.2e-08 Score=95.67 Aligned_cols=260 Identities=13% Similarity=0.103 Sum_probs=188.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC--
Q 010496 187 LNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG-- 264 (509)
Q Consensus 187 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 264 (509)
...+...|++++|++.++.-... +......+......+.+.|+.++|..+|..+++.+ |.+..-|..+..+.....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~ 88 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQL 88 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccc
Confidence 45678899999999999886553 33345556677888999999999999999999998 667777777777763332
Q ss_pred ---CHHHHHHHHHhccCCCh--hhHHHHHHHHHhCCCh-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHH
Q 010496 265 ---CIEFARQVFQRMHKRTL--VSWNSIIVGFAVNGFV-GEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRY 338 (509)
Q Consensus 265 ---~~~~a~~~~~~~~~~~~--~~~~~l~~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~ 338 (509)
+.+...++|+++....+ .....+.-.+.....+ ..+..++..+...|+++ +|..|-..|....+.+....+
T Consensus 89 ~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l 165 (517)
T PF12569_consen 89 SDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESL 165 (517)
T ss_pred ccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHH
Confidence 56777888888764322 2222222222222223 34556777788888764 455555556655555555555
Q ss_pred HHHhHHhc-------------CCCCCH--HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 010496 339 FDIMKKIY-------------RVSPRI--EHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKGDII 401 (509)
Q Consensus 339 ~~~~~~~~-------------~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~ 401 (509)
+....... .-+|+. .++..+...|-..|++++|++++++. ...|. +..|..-...+-+.|++.
T Consensus 166 ~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 166 VEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHH
Confidence 55544211 123443 34567788899999999999999976 67776 558888889999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 010496 402 LAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQK 451 (509)
Q Consensus 402 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 451 (509)
+|.+.++.+..+++.|.-.-+-.+..+.+.|+.++|.+++....+.+..|
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~ 295 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDP 295 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCc
Confidence 99999999999999988777888888999999999999999998877633
No 80
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.16 E-value=4.1e-09 Score=98.20 Aligned_cols=249 Identities=15% Similarity=0.120 Sum_probs=190.6
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHhCCChHHH
Q 010496 224 ACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEA 300 (509)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A 300 (509)
-+.+.|++.+|.-.|+..++.+ |-+...|..|.......++-..|+..+++..+- +....-.|.-.|...|.-..|
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHH
Confidence 3467888999999999999887 788999999999999999999999999888754 456667777788889998999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHH-----------HHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 010496 301 LEYFNSMQKEGFKPDGVSFTGAL-----------TACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLE 369 (509)
Q Consensus 301 ~~~~~~m~~~g~~p~~~~~~~li-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 369 (509)
++.++.-+....+ |..+. ..+.....+....++|-.+....+..+|..++..|.-.|--.|.++
T Consensus 373 l~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 373 LKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred HHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 9999888764311 11111 1122223344555566666545665678888999999999999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 370 DALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 370 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+|...|+.+ .++| |...||.|...++...+.++|+..|.+++++.|.-..+...|+..|...|.+++|.+.|-..+..
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 999999987 7788 56699999999999999999999999999999999999999999999999999999999776654
Q ss_pred CCccCCcccEEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHc
Q 010496 448 GIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLC 494 (509)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 494 (509)
.-..... .+..++ .+.+|..+...+..|.+.
T Consensus 528 q~ks~~~---------------~~~~~~-se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 528 QRKSRNH---------------NKAPMA-SENIWQTLRLALSAMNRS 558 (579)
T ss_pred hhccccc---------------ccCCcc-hHHHHHHHHHHHHHcCCc
Confidence 2211000 000022 578888888777777655
No 81
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.16 E-value=4.7e-07 Score=79.55 Aligned_cols=386 Identities=12% Similarity=0.059 Sum_probs=228.6
Q ss_pred HHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhh-cCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh
Q 010496 52 ISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGC-ADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAK 130 (509)
Q Consensus 52 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 130 (509)
+.-+....++..|+.+++--...+-. ........|..| .+. |+++.|...+..+.... .++ ...+..|+.++.-
T Consensus 29 Ledfls~rDytGAislLefk~~~~~E-EE~~~~lWia~C~fhL--gdY~~Al~~Y~~~~~~~-~~~-~el~vnLAcc~Fy 103 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDRE-EEDSLQLWIAHCYFHL--GDYEEALNVYTFLMNKD-DAP-AELGVNLACCKFY 103 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchh-hhHHHHHHHHHHHHhh--ccHHHHHHHHHHHhccC-CCC-cccchhHHHHHHH
Confidence 55666778888888888776643322 222344444433 445 88888888887777644 344 6666777777777
Q ss_pred cCCchHHHHHHHhcCCC---------------ChH--------------HHHHHHHHHHhCCCHHHHHHHHhcCCCCCHh
Q 010496 131 FGRMDLATVVFDAMRVK---------------SSF--------------TWNAMIDGYMRRGDIESAVRMFDEMPVRDAI 181 (509)
Q Consensus 131 ~g~~~~A~~~~~~~~~~---------------~~~--------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 181 (509)
.|.+.+|.++-++..+. |.. .-.+|....--.-.+.+|+++++++...++.
T Consensus 104 Lg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~e 183 (557)
T KOG3785|consen 104 LGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPE 183 (557)
T ss_pred HHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChh
Confidence 78888888877766531 111 1112233333344678888888877655432
Q ss_pred --HHH-HHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHc--cCCHHHHH--H----------HHHHHHH
Q 010496 182 --SWT-ALLNGFVKRGYFEEALECFREMQISGVEPDY-VTIISVLNACAN--VGTLGIGL--W----------IHRYVLK 243 (509)
Q Consensus 182 --~~~-~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~--~~~~~~a~--~----------~~~~~~~ 243 (509)
..| .+.-+|.+..-++-+.+++.-..+. .||. ...+..+....+ .|+..+.+ . ..+.+.+
T Consensus 184 y~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~r 261 (557)
T KOG3785|consen 184 YIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCR 261 (557)
T ss_pred hhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHH
Confidence 222 3455677888888888888777664 3443 333332222222 12211110 1 1111111
Q ss_pred cCC------C------C-----cHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCC-------ChHH
Q 010496 244 QDF------K------D-----NVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNG-------FVGE 299 (509)
Q Consensus 244 ~~~------~------~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~ 299 (509)
.++ + | -+..-..|+-.|.+.+++++|..+.+++...++.-|-.-.-.++..| ...-
T Consensus 262 HNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKi 341 (557)
T KOG3785|consen 262 HNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKI 341 (557)
T ss_pred cCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 110 0 0 01223345566788899999999999888666655544444444444 3455
Q ss_pred HHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC
Q 010496 300 ALEYFNSMQKEGFKPDGV-SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM 378 (509)
Q Consensus 300 A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 378 (509)
|.+.|+..-+.+..-|.. --.++..++.-..++++++.+++.+. .+-...|...+ .+.++++..|.+.+|+++|-++
T Consensus 342 AqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~-sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~i 419 (557)
T KOG3785|consen 342 AQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIE-SYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRI 419 (557)
T ss_pred HHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhh
Confidence 666666555544433322 12234444555667888888888888 44444444444 4788999999999999999887
Q ss_pred C-CC-CCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 379 P-MK-PNEVVLGS-LLAACRTKGDIILAERLMKYLVDLDPGVD-SNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 379 ~-~~-p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
. .+ .|..+|.. |.++|.+.++++.|..++-++ ..|... .....++..|.+.+.+=-|-+.|+.+....
T Consensus 420 s~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~--~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 420 SGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT--NTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred cChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc--CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 3 11 25566655 456788899998887776544 222222 235566778889999888888888886654
No 82
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.16 E-value=1.7e-07 Score=81.87 Aligned_cols=301 Identities=13% Similarity=0.072 Sum_probs=195.1
Q ss_pred CCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHH---HHHHHhCCCHHHHHHHHhcCCCCCHhHHHHH---H
Q 010496 114 DRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAM---IDGYMRRGDIESAVRMFDEMPVRDAISWTAL---L 187 (509)
Q Consensus 114 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---i 187 (509)
.|.++.-..-|.+.+...|++..|+.-|....+-|+..|.++ ...|...|+-..|+.=|..+.+..+..+.+- .
T Consensus 34 ~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg 113 (504)
T KOG0624|consen 34 SPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRG 113 (504)
T ss_pred CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhc
Confidence 333344555566666777777777777777776666655554 3456666766666666665554433333333 2
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCH----------------hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHh
Q 010496 188 NGFVKRGYFEEALECFREMQISGVEPDY----------------VTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVK 251 (509)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 251 (509)
..+.+.|.+++|..-|+...+.. |+. ......+..+...|+...|+.....+++.. +.+..
T Consensus 114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~ 190 (504)
T KOG0624|consen 114 VVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDAS 190 (504)
T ss_pred hhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhH
Confidence 45677777777777777776653 211 112233445667788888888888888775 77888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH----HHH--
Q 010496 252 VCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSF----TGA-- 322 (509)
Q Consensus 252 ~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~----~~l-- 322 (509)
.+..-..+|...|++..|+.-++.+. ..+..+.--+-..+-..|+.+.++..+++-++. .||.... ..|
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHH
Confidence 88888888888888888877666554 345666666777777788888888888777763 5664321 111
Q ss_pred -HH------HHhccCCHHHHHHHHHHhHHhcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHH
Q 010496 323 -LT------ACSHAGLIEDGLRYFDIMKKIYRVSP--RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLL 391 (509)
Q Consensus 323 -i~------~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~ 391 (509)
.. .....+.|.++..-.+.+.+...-.+ ....+..+..++...|++.+|++...+. .+.|+ +.++.--.
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRA 348 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRA 348 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHH
Confidence 11 12344666677776666663211111 1233455666777778888888877775 56665 66777778
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010496 392 AACRTKGDIILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 419 (509)
.+|.-...++.|+.-|+++.+.++.+..
T Consensus 349 eA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 349 EAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred HHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 8888888888888888888888877653
No 83
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.14 E-value=4.3e-06 Score=81.11 Aligned_cols=331 Identities=15% Similarity=0.084 Sum_probs=223.2
Q ss_pred chHHHHHHHHHHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC-----CHhHHHHHHH
Q 010496 117 NVMVGTALLDMYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR-----DAISWTALLN 188 (509)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~ 188 (509)
++.+|..|.-++...|+++.+-+.|++...- ....|+.+...|...|.-..|..+++....+ +...+-..-.
T Consensus 322 d~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmask 401 (799)
T KOG4162|consen 322 DAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASK 401 (799)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHH
Confidence 4788888888889999999999999988743 5567888888899999999999999866533 2333333333
Q ss_pred HH-HHcCChHHHHHHHHHHHHc--CC--CCCHhHHHHHHHHHHcc----CC-------HHHHHHHHHHHHHcCCCCcHhH
Q 010496 189 GF-VKRGYFEEALECFREMQIS--GV--EPDYVTIISVLNACANV----GT-------LGIGLWIHRYVLKQDFKDNVKV 252 (509)
Q Consensus 189 ~~-~~~~~~~~A~~~~~~m~~~--~~--~p~~~~~~~l~~~~~~~----~~-------~~~a~~~~~~~~~~~~~~~~~~ 252 (509)
.| -+.+..++++.+-.+.... +. ......|..+.-+|... .. ..++.+.+++..+.+ +.|..+
T Consensus 402 lc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~dp~~ 480 (799)
T KOG4162|consen 402 LCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PTDPLV 480 (799)
T ss_pred HHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CCCchH
Confidence 33 3457788888888887762 11 12334555555555432 11 256777888888876 445555
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcc----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCC-------------
Q 010496 253 CNTLIDLYSRCGCIEFARQVFQRMH----KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKE-GFKP------------- 314 (509)
Q Consensus 253 ~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p------------- 314 (509)
...+.--|+..++.+.|.+..++.. ..+...|..+.-.+...+++.+|+.+.+..... |..-
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhc
Confidence 5555666788889999998888765 347789999999999999999999999987764 2100
Q ss_pred -----CHHHHHHHHHHHhc---------c--------------CCHHHHHHHHHHhHH-------hcC---------CCC
Q 010496 315 -----DGVSFTGALTACSH---------A--------------GLIEDGLRYFDIMKK-------IYR---------VSP 350 (509)
Q Consensus 315 -----~~~~~~~li~~~~~---------~--------------~~~~~a~~~~~~~~~-------~~~---------~~~ 350 (509)
-..|...++..+-. . ++..++.+..+.+.. ..+ ..|
T Consensus 561 ~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~ 640 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLP 640 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccC
Confidence 01122222221110 0 011111111111100 001 111
Q ss_pred --C------HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 010496 351 --R------IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSN 420 (509)
Q Consensus 351 --~------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 420 (509)
+ ...|......+.+.+..++|...+.+. ++.| ....|......+...|..++|.+.|..+...+|++...
T Consensus 641 ~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s 720 (799)
T KOG4162|consen 641 GPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS 720 (799)
T ss_pred CCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH
Confidence 1 223445666777888888888777776 4444 45577777788889999999999999999999999999
Q ss_pred HHHHHHHHHHcCCchHHHH--HHHHHHhCC
Q 010496 421 YVLLANMYAAVGKWDGAGK--IRRTMKGRG 448 (509)
Q Consensus 421 ~~~l~~~~~~~g~~~~A~~--~~~~m~~~~ 448 (509)
..+++.++.+.|+..-|.. ++..+.+.+
T Consensus 721 ~~Ala~~lle~G~~~la~~~~~L~dalr~d 750 (799)
T KOG4162|consen 721 MTALAELLLELGSPRLAEKRSLLSDALRLD 750 (799)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHHhhC
Confidence 9999999999998887777 888887754
No 84
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=8.6e-07 Score=82.39 Aligned_cols=372 Identities=14% Similarity=0.113 Sum_probs=191.8
Q ss_pred HHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcC
Q 010496 53 SRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFG 132 (509)
Q Consensus 53 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 132 (509)
.+.+..|+++.|+.+|...+... ++|...|+.=..+++.. ++++.|.+--...++.. |+=+..|..+..++.-.|
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~--~~~~~al~da~k~~~l~--p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASL--GSYEKALKDATKTRRLN--PDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHH--hhHHHHHHHHHHHHhcC--CchhhHHHHhHHHHHhcc
Confidence 44566788888888888877643 33555676667777777 77777777666665554 554677788888888888
Q ss_pred CchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhc------CC-CC------CHhHHHHHHHHHHHc---
Q 010496 133 RMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDE------MP-VR------DAISWTALLNGFVKR--- 193 (509)
Q Consensus 133 ~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~------~~-~~------~~~~~~~li~~~~~~--- 193 (509)
++++|+..|.+-.+. +...++.+..++... . ++.+.|.. +. .| ....|..++..+-+.
T Consensus 85 ~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~ 161 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEKDPSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTS 161 (539)
T ss_pred cHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHh
Confidence 888888888876643 444555555555111 0 01111110 00 00 111222222222111
Q ss_pred -------CChHHHHHHHHH-----HHHcC-------CCC----------------------CHhHHHHHHHHHHccCCHH
Q 010496 194 -------GYFEEALECFRE-----MQISG-------VEP----------------------DYVTIISVLNACANVGTLG 232 (509)
Q Consensus 194 -------~~~~~A~~~~~~-----m~~~~-------~~p----------------------~~~~~~~l~~~~~~~~~~~ 232 (509)
.+...|...+.. +...| ..| -..-...+.++..+..++.
T Consensus 162 l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 162 LKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred hhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHH
Confidence 001111111100 00000 001 1134566777777888888
Q ss_pred HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCh---h-------hHHHHHHHHHhCCChHHHHH
Q 010496 233 IGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTL---V-------SWNSIIVGFAVNGFVGEALE 302 (509)
Q Consensus 233 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~-------~~~~l~~~~~~~~~~~~A~~ 302 (509)
.+.+.+...++.. .+..-++....+|...|.+..+...-....+..- . .+..+..+|.+.++++.|+.
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 8888888887765 5566677777788888877777666665543311 1 22224445666777888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 010496 303 YFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRI-EHYGCIVDLYSRAGRLEDALNVVENM-PM 380 (509)
Q Consensus 303 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 380 (509)
.|.+.+.....|+..+ +....+++....+... -+.|.. .-...-...+.+.|++..|+..+.++ ..
T Consensus 320 ~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr 387 (539)
T KOG0548|consen 320 YYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR 387 (539)
T ss_pred HHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Confidence 8888776544443322 1122222222222222 111211 11111133444455555555555444 22
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 381 KP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 381 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.| |...|....-+|.+.|.+..|+.-.+..++++|.....|..=+.++....+|++|++.|.+-.+
T Consensus 388 ~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 388 DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 23 3344555555555555555555555555555555444455555555555555555555544433
No 85
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.13 E-value=5.4e-08 Score=80.48 Aligned_cols=191 Identities=15% Similarity=0.090 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYS 261 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (509)
+...|.-.|...|+...|..-+++.++.. +-+..++..+...|.+.|..+.|.+-|++.++.. |.+..+.|.....+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 34456667777777777777777777753 3345666677777777777777777777777765 566677777777777
Q ss_pred hcCCHHHHHHHHHhccC-C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010496 262 RCGCIEFARQVFQRMHK-R----TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGL 336 (509)
Q Consensus 262 ~~g~~~~a~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 336 (509)
..|++++|...|++... | -..+|..+.-+..+.|+.+.|...|++.++... -...+...+.....+.|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp-~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDP-QFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCc-CCChHHHHHHHHHHhcccchHHH
Confidence 77777777777776653 2 234566666666666777777777766666521 13345555566666666666666
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHh
Q 010496 337 RYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVEN 377 (509)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 377 (509)
.+++.... +..++..+....|+.-.+.|+.+.+-++=..
T Consensus 194 ~~~~~~~~--~~~~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 194 LYLERYQQ--RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred HHHHHHHh--cccccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 66666663 2235555555555555566665555544333
No 86
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.12 E-value=2.3e-07 Score=88.07 Aligned_cols=191 Identities=12% Similarity=0.089 Sum_probs=95.8
Q ss_pred CCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC---CC--h-HHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHH
Q 010496 114 DRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV---KS--S-FTWNAMIDGYMRRGDIESAVRMFDEMPVR---DAISWT 184 (509)
Q Consensus 114 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~--~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~ 184 (509)
+|+.+..+..+...+...|+.+.+.+.+..... .+ . .........+...|++++|.+.++..... +...+.
T Consensus 2 dp~~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 2 DPDFALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred CCccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 466677777788777777877776665555431 11 1 11112233345566666666666554321 333332
Q ss_pred HHHHHHHH----cCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 010496 185 ALLNGFVK----RGYFEEALECFREMQISGVEPD-YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDL 259 (509)
Q Consensus 185 ~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (509)
. ...+.. .+....+.+.+... ....|+ ......+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus 82 ~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i 157 (355)
T cd05804 82 L-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHV 157 (355)
T ss_pred H-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence 1 112222 23333333333331 111222 2223344445566666666666666666654 4445555566666
Q ss_pred HHhcCCHHHHHHHHHhccCC-----Ch--hhHHHHHHHHHhCCChHHHHHHHHHHH
Q 010496 260 YSRCGCIEFARQVFQRMHKR-----TL--VSWNSIIVGFAVNGFVGEALEYFNSMQ 308 (509)
Q Consensus 260 ~~~~g~~~~a~~~~~~~~~~-----~~--~~~~~l~~~~~~~~~~~~A~~~~~~m~ 308 (509)
+...|++++|...+++..+. +. ..|..+...+...|++++|..++++..
T Consensus 158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 66666666666666654421 11 123345555555566666666665553
No 87
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.11 E-value=4.2e-07 Score=79.83 Aligned_cols=342 Identities=13% Similarity=0.130 Sum_probs=204.9
Q ss_pred cchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHH
Q 010496 96 QCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMF 172 (509)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~ 172 (509)
+++..|..+++.-...+-+.. ..+-.-+..++.+.|++++|...+..+... +...+..|...+.-.|.+.+|..+-
T Consensus 36 rDytGAislLefk~~~~~EEE-~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~ 114 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEE-DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIA 114 (557)
T ss_pred ccchhHHHHHHHhhccchhhh-HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHH
Confidence 677777777776665543333 233344667788999999999999988753 5567777777777788899988887
Q ss_pred hcCCCC---------------CHh---HH-----------HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHH-
Q 010496 173 DEMPVR---------------DAI---SW-----------TALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVL- 222 (509)
Q Consensus 173 ~~~~~~---------------~~~---~~-----------~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~- 222 (509)
....+. |.. ++ -.|....-..-.+++|++++...... .|+....+.-+
T Consensus 115 ~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey~alNVy~A 192 (557)
T KOG3785|consen 115 EKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEYIALNVYMA 192 (557)
T ss_pred hhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--ChhhhhhHHHHH
Confidence 766421 111 01 11222222233577888888887764 45555555433
Q ss_pred HHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc--CCHHH--HHHHHHhcc----------C----------
Q 010496 223 NACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRC--GCIEF--ARQVFQRMH----------K---------- 278 (509)
Q Consensus 223 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~--a~~~~~~~~----------~---------- 278 (509)
-+|.+..-++.+.+++.-.++.- +.+....|.......+. |+..+ -.++-+... +
T Consensus 193 LCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngE 271 (557)
T KOG3785|consen 193 LCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGE 271 (557)
T ss_pred HHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCc
Confidence 45567777777777777666542 44444444443333322 22111 111111111 0
Q ss_pred -----------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-----hccCCHHHHHHHHHHh
Q 010496 279 -----------RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTAC-----SHAGLIEDGLRYFDIM 342 (509)
Q Consensus 279 -----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-----~~~~~~~~a~~~~~~~ 342 (509)
-=+.....++--|.+.++..+|..+.+++.- ..|-......+..+- ........|.+.|+.+
T Consensus 272 gALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlV 349 (557)
T KOG3785|consen 272 GALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLV 349 (557)
T ss_pred cHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHh
Confidence 0112333445557788888888888776532 233333333333221 1122355567777666
Q ss_pred HHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010496 343 KKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENMP--MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 343 ~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 419 (509)
-. .+..- ++.--.++..++.-..++++++-+++.++ +..|...-..+..+.+..|++.+|+++|-++......+..
T Consensus 350 G~-Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~ 428 (557)
T KOG3785|consen 350 GE-SALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKI 428 (557)
T ss_pred cc-cccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhH
Confidence 52 23222 22223445566666678888888887773 3334444445788999999999999999988776666666
Q ss_pred hH-HHHHHHHHHcCCchHHHHHHHHH
Q 010496 420 NY-VLLANMYAAVGKWDGAGKIRRTM 444 (509)
Q Consensus 420 ~~-~~l~~~~~~~g~~~~A~~~~~~m 444 (509)
.| ..|+++|.+.++.+-|..++-++
T Consensus 429 ~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 429 LYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 66 45778999999999998887655
No 88
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.09 E-value=1.2e-07 Score=78.35 Aligned_cols=199 Identities=14% Similarity=0.055 Sum_probs=156.9
Q ss_pred HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHh
Q 010496 217 TIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAV 293 (509)
Q Consensus 217 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~ 293 (509)
+...|.-.|...|+...|..-+++.++.+ |.+..++..+...|.+.|+.+.|.+.|++..+ .+..+.|.....+|.
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHh
Confidence 34556677889999999999999999887 67788888899999999999999999988763 466778888888899
Q ss_pred CCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHH
Q 010496 294 NGFVGEALEYFNSMQKEGFKP-DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDAL 372 (509)
Q Consensus 294 ~~~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 372 (509)
.|++++|...|++....-.-| -..+|..+.-+..+.|+.+.|...|++..+. .+-.......+.....+.|++..|.
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHHH
Confidence 999999999999888753222 2457778887888899999999999988842 2223456677888888889999998
Q ss_pred HHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010496 373 NVVENM--PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD 418 (509)
Q Consensus 373 ~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 418 (509)
.+++.. ...++..+.-..|..-...|+.+.+.+.=.++.+..|...
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 888876 3457777777778888888888888888777777777654
No 89
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=2.2e-06 Score=80.49 Aligned_cols=350 Identities=11% Similarity=0.055 Sum_probs=220.7
Q ss_pred hcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHH--HhCCCHHH
Q 010496 90 CADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGY--MRRGDIES 167 (509)
Q Consensus 90 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~ 167 (509)
.... ++++.|.+....++..+ |++..++..-+.++++.+.+++|+.+.+.-........-.+=.+| .+.+..++
T Consensus 22 ~~~~--~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~De 97 (652)
T KOG2376|consen 22 HGKN--GEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDE 97 (652)
T ss_pred hccc--hHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHH
Confidence 3444 89999999999998887 777899999999999999999999877765532111111123444 47899999
Q ss_pred HHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-------------------------C--CHhHHHH
Q 010496 168 AVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVE-------------------------P--DYVTIIS 220 (509)
Q Consensus 168 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~-------------------------p--~~~~~~~ 220 (509)
|+..++...+.+..+...-...+-+.|++++|+.+|+.+.+.+.. | ...+|..
T Consensus 98 alk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel 177 (652)
T KOG2376|consen 98 ALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYEL 177 (652)
T ss_pred HHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHH
Confidence 999999776667667777778889999999999999998654321 0 1124444
Q ss_pred HHH---HHHccCCHHHHHHHHHHHHHcCC-------CCcH-------hHHHHHHHHHHhcCCHHHHHHHHHhccCC---C
Q 010496 221 VLN---ACANVGTLGIGLWIHRYVLKQDF-------KDNV-------KVCNTLIDLYSRCGCIEFARQVFQRMHKR---T 280 (509)
Q Consensus 221 l~~---~~~~~~~~~~a~~~~~~~~~~~~-------~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~ 280 (509)
+.+ .+...|++.+|+++++...+.+. ..+. .+-..|.-++-..|+..+|..+|..+.+. |
T Consensus 178 ~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~~D 257 (652)
T KOG2376|consen 178 LYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNPAD 257 (652)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcCCC
Confidence 433 34577899999999988833210 0001 12234566677889999999988876532 1
Q ss_pred hh----hHHHHHHHHH---------------------------------------------hCCChHHHHHHHHHHHHCC
Q 010496 281 LV----SWNSIIVGFA---------------------------------------------VNGFVGEALEYFNSMQKEG 311 (509)
Q Consensus 281 ~~----~~~~l~~~~~---------------------------------------------~~~~~~~A~~~~~~m~~~g 311 (509)
.. .-|.++..-. ..+..+.+.++-.... +
T Consensus 258 ~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp--~ 335 (652)
T KOG2376|consen 258 EPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP--G 335 (652)
T ss_pred chHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC--c
Confidence 10 1111111000 0011111111111100 1
Q ss_pred CCCCHHHHHHHHHHHh--ccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHH--------hC-C
Q 010496 312 FKPDGVSFTGALTACS--HAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDALNVVE--------NM-P 379 (509)
Q Consensus 312 ~~p~~~~~~~li~~~~--~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~--------~~-~ 379 (509)
..|. ..+..++..+. +...+..+..++....+ +.+-+ ..+....+......|+++.|.+++. .+ .
T Consensus 336 ~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~ 412 (652)
T KOG2376|consen 336 MSPE-SLFPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILE 412 (652)
T ss_pred cCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhh
Confidence 1222 23334443332 23356777777777764 33333 4556677788889999999999988 33 2
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC----C---CCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 380 MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDP----G---VDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 380 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
+.-.+.+...++..+.+.++.+.|..++..++..-. . -...+..++..-.+.|+.++|..+++++.+.+
T Consensus 413 ~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 413 AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 333445666667778888888888888888776321 1 12235556666678899999999999998843
No 90
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.06 E-value=4.9e-09 Score=94.34 Aligned_cols=145 Identities=15% Similarity=0.135 Sum_probs=69.3
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH----HhcCC
Q 010496 292 AVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLY----SRAGR 367 (509)
Q Consensus 292 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~ 367 (509)
...|++++|++++.+. .+.......+..+.+.++++.|.+.++.|.+ +..|. +...+..++ .-.+.
T Consensus 113 ~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 113 FHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDEDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp CCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCCH-HHHHHHHHHHHHHHTTTC
T ss_pred HHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCcH-HHHHHHHHHHHHHhCchh
Confidence 3345555555444321 2333444445555555555555555555551 22221 111222222 22234
Q ss_pred hHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCc-hHHHHHHHHH
Q 010496 368 LEDALNVVENM--PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKW-DGAGKIRRTM 444 (509)
Q Consensus 368 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~m 444 (509)
+.+|..+|+++ ...++..+.+.+..++...|++++|.+++.++.+.+|.++.+...++.+....|+. +.+.+++.++
T Consensus 183 ~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 183 YQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp CCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 55566666555 23345555555666666666666666666666666666555555666665555555 4455555555
Q ss_pred Hh
Q 010496 445 KG 446 (509)
Q Consensus 445 ~~ 446 (509)
..
T Consensus 263 ~~ 264 (290)
T PF04733_consen 263 KQ 264 (290)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 91
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.04 E-value=1.2e-06 Score=83.27 Aligned_cols=297 Identities=11% Similarity=-0.054 Sum_probs=188.1
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhcCC---CC--CH-hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 010496 149 SFTWNAMIDGYMRRGDIESAVRMFDEMP---VR--DA-ISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVL 222 (509)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~--~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 222 (509)
...|..+...+...|+.+.+.+.+.... .. +. .........+...|++++|.+++++..+.. +.+...+.. .
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~-~ 83 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL-H 83 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-h
Confidence 3456666666777777777655555432 11 22 222333456778899999999999988752 334434432 2
Q ss_pred HHHH----ccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCC
Q 010496 223 NACA----NVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNG 295 (509)
Q Consensus 223 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~ 295 (509)
..+. ..+..+.+.+.+... ....+........+..++...|++++|...+++..+ .+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLW-APENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhcc-CcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence 2222 344555555555441 112233345556777889999999999999999874 35667888899999999
Q ss_pred ChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHH-H--HHHHHHHhcCChH
Q 010496 296 FVGEALEYFNSMQKEGF-KPDG--VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHY-G--CIVDLYSRAGRLE 369 (509)
Q Consensus 296 ~~~~A~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~li~~~~~~g~~~ 369 (509)
++++|...+++...... .|+. ..+..+...+...|++++|..+++++.......+..... + .++.-+...|...
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 99999999999887532 2232 245567788899999999999999986322212222211 1 2333344445433
Q ss_pred HHHHH---HHhC-C---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---------CCchHHHHHHHHHHcCC
Q 010496 370 DALNV---VENM-P---MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG---------VDSNYVLLANMYAAVGK 433 (509)
Q Consensus 370 ~A~~~---~~~~-~---~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~ 433 (509)
.+.++ .... . .............++...|+.++|..+++.+...... ........+.++...|+
T Consensus 243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~ 322 (355)
T cd05804 243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN 322 (355)
T ss_pred hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence 33333 1111 1 1111222235666788999999999999988663321 22345566677889999
Q ss_pred chHHHHHHHHHHhCC
Q 010496 434 WDGAGKIRRTMKGRG 448 (509)
Q Consensus 434 ~~~A~~~~~~m~~~~ 448 (509)
+++|.+.+......+
T Consensus 323 ~~~A~~~L~~al~~a 337 (355)
T cd05804 323 YATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999888754
No 92
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.03 E-value=9.9e-08 Score=81.73 Aligned_cols=82 Identities=15% Similarity=0.161 Sum_probs=60.4
Q ss_pred HHHhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchH
Q 010496 361 LYSRAGRLEDALNVVENMP----MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDG 436 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 436 (509)
.+.+.|+++.|.+.+..|+ ...|+.|...+.-.- ..+++.+..+-+.-+++..|-++.+|..++..||+..-++-
T Consensus 250 Ieyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~l 328 (459)
T KOG4340|consen 250 IEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPFPPETFANLLLLYCKNEYFDL 328 (459)
T ss_pred hhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhH
Confidence 3567788888888888883 334667776654322 34556777777788888888888889999999999888888
Q ss_pred HHHHHHH
Q 010496 437 AGKIRRT 443 (509)
Q Consensus 437 A~~~~~~ 443 (509)
|-.++-+
T Consensus 329 AADvLAE 335 (459)
T KOG4340|consen 329 AADVLAE 335 (459)
T ss_pred HHHHHhh
Confidence 8877643
No 93
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.3e-06 Score=81.16 Aligned_cols=339 Identities=14% Similarity=0.069 Sum_probs=220.3
Q ss_pred cchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC--CC-hHHHHHHHHHHHhCCCHHHHHHHH
Q 010496 96 QCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV--KS-SFTWNAMIDGYMRRGDIESAVRMF 172 (509)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~A~~~~ 172 (509)
|+++.|...|...+.. +|.|...|..-..+|+..|++++|++=-.+-.+ |+ +..|.-...++.-.|++++|+..|
T Consensus 16 ~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay 93 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAY 93 (539)
T ss_pred ccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHH
Confidence 8999999999887766 477799999999999999999999887766654 32 457889999999999999999999
Q ss_pred hcCCCC---CHhHHHHHHHHHHHcCChHHH---HHHHHHHHHc---CCCCCHhHHHHHHHHHHcc-------CCHHHHHH
Q 010496 173 DEMPVR---DAISWTALLNGFVKRGYFEEA---LECFREMQIS---GVEPDYVTIISVLNACANV-------GTLGIGLW 236 (509)
Q Consensus 173 ~~~~~~---~~~~~~~li~~~~~~~~~~~A---~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~-------~~~~~a~~ 236 (509)
.+-.+. |...++.+..++.......+. -.++..+... ........|..++..+-+. ...+...+
T Consensus 94 ~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~ 173 (539)
T KOG0548|consen 94 SEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMK 173 (539)
T ss_pred HHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHH
Confidence 977654 566777777766211000000 0011111000 0000111222222222111 00111111
Q ss_pred HHHHHHH--------cC-------CCC----------------------cHhHHHHHHHHHHhcCCHHHHHHHHHhccCC
Q 010496 237 IHRYVLK--------QD-------FKD----------------------NVKVCNTLIDLYSRCGCIEFARQVFQRMHKR 279 (509)
Q Consensus 237 ~~~~~~~--------~~-------~~~----------------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 279 (509)
..-.+.. .+ ..| -..-...+..+..+..++..|.+-+.....-
T Consensus 174 a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el 253 (539)
T KOG0548|consen 174 ADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKALEL 253 (539)
T ss_pred HHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhH
Confidence 1111110 00 011 0112456788888888999999988877643
Q ss_pred --ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH-------HHHHHHhccCCHHHHHHHHHHhHHhcCCCC
Q 010496 280 --TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFT-------GALTACSHAGLIEDGLRYFDIMKKIYRVSP 350 (509)
Q Consensus 280 --~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-------~li~~~~~~~~~~~a~~~~~~~~~~~~~~~ 350 (509)
+..-++....+|...|.+..+...-....+.|.. ...-|+ .+..++.+.++++.++..|.+... ....|
T Consensus 254 ~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLt-e~Rt~ 331 (539)
T KOG0548|consen 254 ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALT-EHRTP 331 (539)
T ss_pred hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhh-hhcCH
Confidence 4445666777899999988888887777766533 222222 233466677889999999999874 33334
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 010496 351 RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEV-VLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMY 428 (509)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 428 (509)
+ ...+....+++....+.. -+.|... -...-...+.+.|++..|++.|.+++..+|+++..|...+-+|
T Consensus 332 ~---------~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~ 402 (539)
T KOG0548|consen 332 D---------LLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACY 402 (539)
T ss_pred H---------HHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 3 233445566666666554 2445432 3333367788999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 010496 429 AAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~~ 447 (509)
.+.|.+..|++-.+..++.
T Consensus 403 ~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHhhHHHHHHHHHHHHhc
Confidence 9999999999977766665
No 94
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.94 E-value=9.5e-08 Score=86.09 Aligned_cols=248 Identities=14% Similarity=0.110 Sum_probs=150.2
Q ss_pred HHhCCCHHHHHHHHhcCCCC----CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHH
Q 010496 159 YMRRGDIESAVRMFDEMPVR----DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIG 234 (509)
Q Consensus 159 ~~~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 234 (509)
+.-.|++..++.-.+ .... +......+.+++...|+++.++ .+..... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 334566776665444 2111 2334455667777888766543 3333332 55555555555555444444455
Q ss_pred HHHHHHHHHcCCC-CcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC
Q 010496 235 LWIHRYVLKQDFK-DNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFK 313 (509)
Q Consensus 235 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~ 313 (509)
..-+++....... .+..+......++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. .
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~ 161 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--D 161 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--S
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence 4444443333222 23333344445566678888888887765 45666677788888888888888888888764 3
Q ss_pred CCHHHHHHHHHHHhc----cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHH
Q 010496 314 PDGVSFTGALTACSH----AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVL 387 (509)
Q Consensus 314 p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~ 387 (509)
.| .+...+..++.. .+.+.+|..+|+++.+ ...+++.+.+.+..+....|++++|.+++.+. ...| +..++
T Consensus 162 eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~L 238 (290)
T PF04733_consen 162 ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTL 238 (290)
T ss_dssp CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHH
T ss_pred Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHH
Confidence 33 344444444432 3468888888888874 44567778888888888888888888888775 4444 45577
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHhcCCCCC
Q 010496 388 GSLLAACRTKGDI-ILAERLMKYLVDLDPGVD 418 (509)
Q Consensus 388 ~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~ 418 (509)
..++.+....|+. +.+.+++.++....|..+
T Consensus 239 aNliv~~~~~gk~~~~~~~~l~qL~~~~p~h~ 270 (290)
T PF04733_consen 239 ANLIVCSLHLGKPTEAAERYLSQLKQSNPNHP 270 (290)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHCHHHTTTSH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHhCCCCh
Confidence 7777777777776 667788888888777654
No 95
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.93 E-value=2e-06 Score=75.41 Aligned_cols=282 Identities=13% Similarity=0.042 Sum_probs=187.9
Q ss_pred cchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHH---HHHHHhCCCHHHHHHHH
Q 010496 96 QCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAM---IDGYMRRGDIESAVRMF 172 (509)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~~ 172 (509)
+.+..|..-+...++. +|+|..++..-...|...|+-..|+.-|+++.+..+..+.+- ...+.+.|.+++|..=|
T Consensus 52 ~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF 129 (504)
T KOG0624|consen 52 GQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADF 129 (504)
T ss_pred hhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHH
Confidence 4444444444444443 355455555555566666666666666665554322222222 23455666666666666
Q ss_pred hcCCCCCH------h------------HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHH
Q 010496 173 DEMPVRDA------I------------SWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIG 234 (509)
Q Consensus 173 ~~~~~~~~------~------------~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 234 (509)
+.+...++ . .....+..+...|+...|++....+.+.. +.|...|..-..+|...|++..|
T Consensus 130 ~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~A 208 (504)
T KOG0624|consen 130 DQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKA 208 (504)
T ss_pred HHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHH
Confidence 55543211 1 11233455667788999999999888853 55888888888899999999999
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChh------hHHHH---------HHHHHhCCChHH
Q 010496 235 LWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLV------SWNSI---------IVGFAVNGFVGE 299 (509)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~l---------~~~~~~~~~~~~ 299 (509)
+.=++.+.+.. ..+...+..+-..+...|+.+.++...++..+-|+. .|..+ +......++|.+
T Consensus 209 I~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~ 287 (504)
T KOG0624|consen 209 IHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTE 287 (504)
T ss_pred HHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 88888877765 556777777888888899999998888888754332 12111 223456788999
Q ss_pred HHHHHHHHHHCCCCCCHH---HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHH
Q 010496 300 ALEYFNSMQKEGFKPDGV---SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDALNVV 375 (509)
Q Consensus 300 A~~~~~~m~~~g~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~ 375 (509)
+++..+..++........ .+..+-.++...+++.+|++...++. .+.|+ +.++.--..+|.-...++.|+.-|
T Consensus 288 cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dy 364 (504)
T KOG0624|consen 288 CLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDY 364 (504)
T ss_pred HHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 999999988864332233 34445556778899999999999998 44564 888888888999999999999999
Q ss_pred HhC-CCCCCH
Q 010496 376 ENM-PMKPNE 384 (509)
Q Consensus 376 ~~~-~~~p~~ 384 (509)
+.. ...++.
T Consensus 365 e~A~e~n~sn 374 (504)
T KOG0624|consen 365 EKALELNESN 374 (504)
T ss_pred HHHHhcCccc
Confidence 887 455543
No 96
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.93 E-value=1.3e-07 Score=88.35 Aligned_cols=249 Identities=15% Similarity=0.105 Sum_probs=188.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 010496 187 LNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCI 266 (509)
Q Consensus 187 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 266 (509)
...+.+.|+..+|.=.|+..++.+ +-+...|..|.......++-..|+..+++.++.+ |.+..+.-.|.-.|...|.-
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q 369 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQ 369 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhH
Confidence 445678899999999999998874 4467889999999999999999999999999987 78899999999999999999
Q ss_pred HHHHHHHHhccCCC-hhhHHHHH---------HHHHhCCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhccCCHHHH
Q 010496 267 EFARQVFQRMHKRT-LVSWNSII---------VGFAVNGFVGEALEYFNSMQK-EGFKPDGVSFTGALTACSHAGLIEDG 335 (509)
Q Consensus 267 ~~a~~~~~~~~~~~-~~~~~~l~---------~~~~~~~~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~~~~~~a 335 (509)
..|++.|+.-.... ...|.... ..+..........++|-++.. .+..+|......|.-.|--.|++++|
T Consensus 370 ~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 370 NQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 99999988763211 00110000 112222234455555555544 44346666777777778889999999
Q ss_pred HHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 336 LRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEV-VLGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 336 ~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
++.|+.++ .++| |...||.|...++...+.++|+..|.+. .++|.-+ +...|.-.|...|.+++|.+.|-.++.
T Consensus 450 iDcf~~AL---~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 450 VDCFEAAL---QVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHH---hcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999999 4556 6889999999999999999999999887 7889744 777788899999999999999998888
Q ss_pred cCCCC----------CchHHHHHHHHHHcCCchHHHHH
Q 010496 413 LDPGV----------DSNYVLLANMYAAVGKWDGAGKI 440 (509)
Q Consensus 413 ~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~ 440 (509)
+.+.. ...|..|=.++.-.++.|-+.+.
T Consensus 527 mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 65441 13566666666666766644443
No 97
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.92 E-value=1.3e-06 Score=84.02 Aligned_cols=259 Identities=15% Similarity=0.191 Sum_probs=129.4
Q ss_pred HHHHHHHHhcCCchHHHHHHHhcC--CCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhH--------H--------
Q 010496 122 TALLDMYAKFGRMDLATVVFDAMR--VKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAIS--------W-------- 183 (509)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~-------- 183 (509)
.+.+..|.+.|.+.+|.+....-. ..|......+..++.+..-+++|-++|+.+..++... |
T Consensus 619 laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielar 698 (1636)
T KOG3616|consen 619 LAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR 698 (1636)
T ss_pred HHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH
Confidence 345777888888877766543221 2355555555555555555566666665554332110 0
Q ss_pred -----------HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhH
Q 010496 184 -----------TALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKV 252 (509)
Q Consensus 184 -----------~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 252 (509)
......+...|+++.|+..|-+.. .....+.+......+.+|+.+++.+.... .-...
T Consensus 699 fafp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~y 767 (1636)
T KOG3616|consen 699 FAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGY 767 (1636)
T ss_pred hhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--ccccc
Confidence 011112222233333332222111 11122334445556666666666555543 22334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH
Q 010496 253 CNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLI 332 (509)
Q Consensus 253 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~ 332 (509)
|..+.+.|...|+++.|.++|-+.. .++-.|..|.+.|+|++|.++-.+.. |.......|..-..-+-+.|++
T Consensus 768 y~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf 840 (1636)
T KOG3616|consen 768 YGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKF 840 (1636)
T ss_pred chHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcch
Confidence 5566666677777777777665543 34445666667777776666654432 3333444454444445556666
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010496 333 EDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMK 408 (509)
Q Consensus 333 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 408 (509)
.+|+++|-.+. .|+. .|.+|-+.|..+..+++..+-.-.--..|-..+..-+-..|+...|...|-
T Consensus 841 ~eaeqlyiti~-----~p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~fl 906 (1636)
T KOG3616|consen 841 AEAEQLYITIG-----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFL 906 (1636)
T ss_pred hhhhheeEEcc-----CchH-----HHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHH
Confidence 66666554443 2433 345666666666666666554211112233344444445555555544433
No 98
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=2.8e-06 Score=82.72 Aligned_cols=366 Identities=13% Similarity=0.080 Sum_probs=226.8
Q ss_pred CcccHHHHHHh--hcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC----------
Q 010496 79 NHITFITLLSG--CADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV---------- 146 (509)
Q Consensus 79 ~~~~~~~ll~~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------- 146 (509)
|..|-..++.. |... |+.+.|.+-...+. + ..+|..++++|.+..++|-|.-.+-.|..
T Consensus 725 d~~TRkaml~FSfyvti--G~MD~AfksI~~Ik------S-~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a 795 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTI--GSMDAAFKSIQFIK------S-DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRA 795 (1416)
T ss_pred CHHHHHhhhceeEEEEe--ccHHHHHHHHHHHh------h-hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHH
Confidence 45555555543 3344 77777766554443 2 67889999999999999988888877762
Q ss_pred --CChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 010496 147 --KSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224 (509)
Q Consensus 147 --~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 224 (509)
.+...-..........|.+++|..+|++.+. |..|=..|...|.|++|+++-+.=-. + .=..||.....-
T Consensus 796 ~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DR--i-HLr~Tyy~yA~~ 867 (1416)
T KOG3617|consen 796 QQNGEEDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDR--I-HLRNTYYNYAKY 867 (1416)
T ss_pred HhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccc--e-ehhhhHHHHHHH
Confidence 1223333344445678899999999987654 44555678888999999888654322 1 123466666666
Q ss_pred HHccCCHHHHHHHHHHHH----------HcC---------CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHH
Q 010496 225 CANVGTLGIGLWIHRYVL----------KQD---------FKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWN 285 (509)
Q Consensus 225 ~~~~~~~~~a~~~~~~~~----------~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 285 (509)
+...+|.+.|+++|++.- ... -..+...|..-...+...|+.+.|+.+|.... -|.
T Consensus 868 Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~-----D~f 942 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK-----DYF 942 (1416)
T ss_pred HHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh-----hhh
Confidence 777788888888776522 111 02234455556666666777777777777654 355
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH--
Q 010496 286 SIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYS-- 363 (509)
Q Consensus 286 ~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-- 363 (509)
.++...|-.|+.++|-++-++ .-|......|.+.|-..|++.+|..+|.++.. +...|+.|.
T Consensus 943 s~VrI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa----------fsnAIRlcKEn 1006 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQA----------FSNAIRLCKEN 1006 (1416)
T ss_pred hheeeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH----------HHHHHHHHHhc
Confidence 566666677777777776654 22556666788888888888888888887652 222222222
Q ss_pred -------------hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH----------HHhcCCC-CCc
Q 010496 364 -------------RAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKY----------LVDLDPG-VDS 419 (509)
Q Consensus 364 -------------~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~----------~~~~~~~-~~~ 419 (509)
...+.-.|-++|++.+..- ...+..|-+.|.+.+|+++.=+ +.++++. +|.
T Consensus 1007 d~~d~L~nlal~s~~~d~v~aArYyEe~g~~~-----~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ 1081 (1416)
T KOG3617|consen 1007 DMKDRLANLALMSGGSDLVSAARYYEELGGYA-----HKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPK 1081 (1416)
T ss_pred CHHHHHHHHHhhcCchhHHHHHHHHHHcchhh-----hHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHH
Confidence 2223445556666654221 1223346677777777764321 2235555 667
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHh----------CCCccCCcccEEEECCEEEEEecCCCCCCchHHHHHHHHHHHH
Q 010496 420 NYVLLANMYAAVGKWDGAGKIRRTMKG----------RGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSF 489 (509)
Q Consensus 420 ~~~~l~~~~~~~g~~~~A~~~~~~m~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (509)
....-+..++...++++|..++-..++ +|++.+..... ++. ...+..++..+...+++++.+
T Consensus 1082 ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE-----~mT---p~Kd~~~~e~~R~~vLeqvae 1153 (1416)
T KOG3617|consen 1082 LLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAE-----LMT---PTKDDMPNEQERKQVLEQVAE 1153 (1416)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH-----hcC---cCcCCCccHHHHHHHHHHHHH
Confidence 788888889999999999988765543 33332221111 110 112235556666677777777
Q ss_pred HHHHcC
Q 010496 490 DLKLCG 495 (509)
Q Consensus 490 ~m~~~g 495 (509)
-..++|
T Consensus 1154 ~c~qQG 1159 (1416)
T KOG3617|consen 1154 LCLQQG 1159 (1416)
T ss_pred HHHhcc
Confidence 766666
No 99
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.84 E-value=1.3e-05 Score=86.36 Aligned_cols=322 Identities=12% Similarity=0.022 Sum_probs=207.1
Q ss_pred HHHhcCCchHHHHHHHhcCC----CChHHHHHHHHHHHhCCCHHHHHHHHhcCCC----C----C----HhHHHHHHHHH
Q 010496 127 MYAKFGRMDLATVVFDAMRV----KSSFTWNAMIDGYMRRGDIESAVRMFDEMPV----R----D----AISWTALLNGF 190 (509)
Q Consensus 127 ~~~~~g~~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~----~----~~~~~~li~~~ 190 (509)
.+...|+++.+...++.+.. .++.........+...|++++|...+..... . + ......+...+
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~ 462 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA 462 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence 34456777777777776631 1333334445556678899998888765421 1 1 11222334556
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHccCCHHHHHHHHHHHHHcCC---CC--cHhHHHHHHHHHH
Q 010496 191 VKRGYFEEALECFREMQISGVEPDY----VTIISVLNACANVGTLGIGLWIHRYVLKQDF---KD--NVKVCNTLIDLYS 261 (509)
Q Consensus 191 ~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~ 261 (509)
...|++++|...+++....-...+. .....+...+...|+++.|...+.+.....- .+ ...++..+...+.
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~ 542 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF 542 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence 7889999999999988763111121 2344556667789999999999888775311 11 1235566777888
Q ss_pred hcCCHHHHHHHHHhccC-------CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCC--CCCC--HHHHHHHHHHH
Q 010496 262 RCGCIEFARQVFQRMHK-------RT----LVSWNSIIVGFAVNGFVGEALEYFNSMQKEG--FKPD--GVSFTGALTAC 326 (509)
Q Consensus 262 ~~g~~~~a~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g--~~p~--~~~~~~li~~~ 326 (509)
..|+++.|...+++... ++ ...+..+...+...|++++|...+.+..... ..+. ...+..+...+
T Consensus 543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 622 (903)
T PRK04841 543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS 622 (903)
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence 99999999998877542 11 1234455566777899999999998876531 1122 23344455667
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHH-----HHHHHHHHhcCChHHHHHHHHhCCCC--CCHH----HHHHHHHHHH
Q 010496 327 SHAGLIEDGLRYFDIMKKIYRVSPRIEHY-----GCIVDLYSRAGRLEDALNVVENMPMK--PNEV----VLGSLLAACR 395 (509)
Q Consensus 327 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~--p~~~----~~~~l~~~~~ 395 (509)
...|+++.|...+...............+ ...+..+...|+.+.|.+++...... .... .+..+..++.
T Consensus 623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 702 (903)
T PRK04841 623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI 702 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence 78899999999988876321111111111 11224455688999999998776311 1111 2345667788
Q ss_pred hcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 396 TKGDIILAERLMKYLVDLDPG------VDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 396 ~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
..|++++|...++++...... ...++..++.++.+.|+.++|...+.+..+..
T Consensus 703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999998874221 12356778889999999999999999998754
No 100
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.83 E-value=2.4e-05 Score=76.55 Aligned_cols=23 Identities=17% Similarity=0.133 Sum_probs=16.6
Q ss_pred hHHHHHHHHHHcCCchHHHHHHH
Q 010496 420 NYVLLANMYAAVGKWDGAGKIRR 442 (509)
Q Consensus 420 ~~~~l~~~~~~~g~~~~A~~~~~ 442 (509)
.+..++.+|.++|.+..|-+=|.
T Consensus 1147 vLeqvae~c~qQG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1147 VLEQVAELCLQQGAYHAATKKFT 1169 (1416)
T ss_pred HHHHHHHHHHhccchHHHHHHHh
Confidence 46778888888888776665543
No 101
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.82 E-value=1.1e-05 Score=80.50 Aligned_cols=355 Identities=16% Similarity=0.199 Sum_probs=215.4
Q ss_pred hHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 010496 48 WTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDM 127 (509)
Q Consensus 48 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (509)
-+.|..-.-+.++..--+..++...+.|.. |..+++++.+.+... ++..+.. .+. |+.-=+..+.-
T Consensus 841 ~deLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDS--NNnPE~f------Lke-----N~yYDs~vVGk 906 (1666)
T KOG0985|consen 841 VDELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDS--NNNPERF------LKE-----NPYYDSKVVGK 906 (1666)
T ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecC--CCChHHh------ccc-----CCcchhhHHhh
Confidence 344555566677777777778888888855 888899988888776 3333211 111 12222333444
Q ss_pred HHhcCCchHHHHHHHhcCCC--------ChHHHHHHHHHHHhCCCHHHHHHHHhcCC-----------------CCCHhH
Q 010496 128 YAKFGRMDLATVVFDAMRVK--------SSFTWNAMIDGYMRRGDIESAVRMFDEMP-----------------VRDAIS 182 (509)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----------------~~~~~~ 182 (509)
||..+++..|.-.+++-... ....|-.....+.+..+.+--.+++.+-. ..|+..
T Consensus 907 YCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~ 986 (1666)
T KOG0985|consen 907 YCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEE 986 (1666)
T ss_pred hhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHH
Confidence 55555555554444433211 11233444444455555444444442211 226677
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC---------------
Q 010496 183 WTALLNGFVKRGYFEEALECFREMQISG--VEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQD--------------- 245 (509)
Q Consensus 183 ~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--------------- 245 (509)
.+..+.++...+-+.+-++++++..-.+ +..+...-+.|+-...+. +...+.++.+++-.-+
T Consensus 987 vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~~ia~iai~~~LyE 1065 (1666)
T KOG0985|consen 987 VSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAPDIAEIAIENQLYE 1065 (1666)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCchhHHHHHhhhhHHH
Confidence 7777888888888888888888876432 111122222333332222 2233333333333222
Q ss_pred --------CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 010496 246 --------FKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGV 317 (509)
Q Consensus 246 --------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 317 (509)
+..+....+.|++ ..+..++|.++-++.. .+..|..+..+-.+.|...+|++-|-+. -|+.
T Consensus 1066 EAF~ifkkf~~n~~A~~VLie---~i~~ldRA~efAe~~n--~p~vWsqlakAQL~~~~v~dAieSyika------dDps 1134 (1666)
T KOG0985|consen 1066 EAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYEFAERCN--EPAVWSQLAKAQLQGGLVKDAIESYIKA------DDPS 1134 (1666)
T ss_pred HHHHHHHHhcccHHHHHHHHH---HhhhHHHHHHHHHhhC--ChHHHHHHHHHHHhcCchHHHHHHHHhc------CCcH
Confidence 0112222222221 1233444444444443 4567999999999999999999877542 3677
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 010496 318 SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTK 397 (509)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~ 397 (509)
.|.-++..+.+.|.+++-.+++..+++ ..-.|.+. ..||-+|++.++..+.++++. .||......+..-|...
T Consensus 1135 ~y~eVi~~a~~~~~~edLv~yL~MaRk-k~~E~~id--~eLi~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~ 1207 (1666)
T KOG0985|consen 1135 NYLEVIDVASRTGKYEDLVKYLLMARK-KVREPYID--SELIFAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEE 1207 (1666)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHH-hhcCccch--HHHHHHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhh
Confidence 899999999999999999999988884 34456554 568889999999988877664 47777788888888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 398 GDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 398 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
|.++.|.-+|... +.|..|+..+...|++..|...-++
T Consensus 1208 ~~y~aAkl~y~~v--------SN~a~La~TLV~LgeyQ~AVD~aRK 1245 (1666)
T KOG0985|consen 1208 KMYEAAKLLYSNV--------SNFAKLASTLVYLGEYQGAVDAARK 1245 (1666)
T ss_pred hhhHHHHHHHHHh--------hhHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8888887777643 3477777777777777776655443
No 102
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.79 E-value=1e-06 Score=90.40 Aligned_cols=202 Identities=13% Similarity=0.075 Sum_probs=168.3
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC--------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHH
Q 010496 247 KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR--------TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVS 318 (509)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~ 318 (509)
|-+...|-..+......++.++|+++++++.+. -...|.++++....-|.-+...++|+++.+. --.-..
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 556778888899999999999999999988742 2347888888878888888889999998875 212346
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHHHH
Q 010496 319 FTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN---EVVLGSLLAAC 394 (509)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~ 394 (509)
|..|...|.+.+..++|.++++.|.++.+ -....|..+++.+.+..+-++|.+++.++ ..-|. .......+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 77888899999999999999999998665 45677999999999999999999999876 44443 44566666777
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccC
Q 010496 395 RTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKK 452 (509)
Q Consensus 395 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~ 452 (509)
.+.|+.+.+..+|+..+...|.....|..+++.-.+.|+.+.+..+|++.+..++.+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 8899999999999999999999888999999999999999999999999999988763
No 103
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=98.79 E-value=1.7e-05 Score=76.57 Aligned_cols=347 Identities=14% Similarity=0.076 Sum_probs=213.6
Q ss_pred HHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Q 010496 52 ISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKF 131 (509)
Q Consensus 52 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 131 (509)
+.+-.+...|.+|+.+++.+.... .-..-|..+...|+.. ++++.|.++|.. ...++..+.+|.+.
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~--~dfe~ae~lf~e----------~~~~~dai~my~k~ 804 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANK--GDFEIAEELFTE----------ADLFKDAIDMYGKA 804 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccc--hhHHHHHHHHHh----------cchhHHHHHHHhcc
Confidence 444556788999999999888753 2344577777888888 999999998743 23456688999999
Q ss_pred CCchHHHHHHHhcCCC--ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 010496 132 GRMDLATVVFDAMRVK--SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQIS 209 (509)
Q Consensus 132 g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 209 (509)
|+++.|.++-++...| ....|-+-..-+-+.|++.+|.+++-.+..|+. .|..|-+.|..+..+++.++--..
T Consensus 805 ~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 805 GKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred ccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh
Confidence 9999999999998877 445677777778899999999999999888863 577899999999999887664321
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChh-----hH
Q 010496 210 GVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLV-----SW 284 (509)
Q Consensus 210 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~ 284 (509)
.-..|...+..-+-..|++..|...|-+.-+ |...+++|...+-|++|.++-+.--..+.. .|
T Consensus 880 ---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flw 947 (1636)
T KOG3616|consen 880 ---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLW 947 (1636)
T ss_pred ---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHH
Confidence 1235666777788889999999887755432 566677888888888888876543322211 11
Q ss_pred -------------------HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 010496 285 -------------------NSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKI 345 (509)
Q Consensus 285 -------------------~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 345 (509)
..-+...+..+.++-|.++-+-..+.. .|... ..+..-+-..|++++|.+.|-+..+.
T Consensus 948 aksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k-~~~vh--lk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 948 AKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK-MGEVH--LKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred HHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc-Cccch--hHHhhhhhhccchhhhhHhhHHHhhc
Confidence 111112223334444444443333321 12211 12222345678888887777666532
Q ss_pred cCC-------CCCHHHH---------HHHHHHHHhcCChHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHH
Q 010496 346 YRV-------SPRIEHY---------GCIVDLYSRAGRLEDALNVVENMPMKPN--EVVLGSLLAACRTKGDIILAERLM 407 (509)
Q Consensus 346 ~~~-------~~~~~~~---------~~li~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~ 407 (509)
... .|+..-. ...+.++.+..+++.|.++-+.-- |+ ..++..-.+.....|++-+|..++
T Consensus 1025 ntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dndwa~aervae~h~--~~~l~dv~tgqar~aiee~d~~kae~fl 1102 (1636)
T KOG3616|consen 1025 NTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDNDWAAAERVAEAHC--EDLLADVLTGQARGAIEEGDFLKAEGFL 1102 (1636)
T ss_pred ccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcccHHHHHHHHHhhC--hhhhHHHHhhhhhccccccchhhhhhhe
Confidence 111 0111000 012233444445555554444331 22 223444445556667777777665
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 010496 408 KYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRR 442 (509)
Q Consensus 408 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 442 (509)
-++ ..|+ ..++-|...+.|.+|+++-+
T Consensus 1103 lra--nkp~------i~l~yf~e~~lw~dalri~k 1129 (1636)
T KOG3616|consen 1103 LRA--NKPD------IALNYFIEAELWPDALRIAK 1129 (1636)
T ss_pred eec--CCCc------hHHHHHHHhccChHHHHHHH
Confidence 443 1222 22344556667777766654
No 104
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.79 E-value=8.9e-07 Score=78.54 Aligned_cols=184 Identities=11% Similarity=0.016 Sum_probs=125.8
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---Ch---hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HH
Q 010496 247 KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TL---VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDG--VS 318 (509)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~ 318 (509)
+.....+..++..+...|+++.|...|+++.+. +. .++..+..++...|++++|...++++.+....... .+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 345667778888888899999999998877642 22 35677788888899999999999998875322111 13
Q ss_pred HHHHHHHHhcc--------CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 010496 319 FTGALTACSHA--------GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSL 390 (509)
Q Consensus 319 ~~~li~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 390 (509)
+..+..++.+. |+.+.|.+.++.+.+.. +-+...+..+..... ..... ......+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~ 172 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDY----LRNRL-----------AGKELYV 172 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHH----HHHHH-----------HHHHHHH
Confidence 44445555543 67788888888887432 222222222211110 00000 0111245
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 391 LAACRTKGDIILAERLMKYLVDLDPGVD---SNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
...+...|++.+|...++++++..|..+ ..+..++.++.+.|++++|..+++.+...
T Consensus 173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6678899999999999999999877643 57899999999999999999999988765
No 105
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.78 E-value=4.1e-06 Score=85.31 Aligned_cols=246 Identities=11% Similarity=0.050 Sum_probs=167.5
Q ss_pred HHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC--C-ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCH
Q 010496 104 IHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV--K-SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDA 180 (509)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 180 (509)
.|.+..-.+++|++...+..|+..+...+++++|.++.+.... | ....|..+...+.+.++...+..+
T Consensus 17 ~~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--------- 87 (906)
T PRK14720 17 KWTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--------- 87 (906)
T ss_pred hhhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh---------
Confidence 3444455577899999999999999999999999999997664 3 333444444466777765544433
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 010496 181 ISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLY 260 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (509)
.++.......++.-+..+...|... .-+...+-.+..+|-+.|+.+++..+|+++++.+ +-|..+.|.+...|
T Consensus 88 ----~~l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ 160 (906)
T PRK14720 88 ----NLIDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSY 160 (906)
T ss_pred ----hhhhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHH
Confidence 4566666666776666666666663 3455678888999999999999999999999998 88899999999999
Q ss_pred HhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHH
Q 010496 261 SRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGV-SFTGALTACSHAGLIEDGLRYF 339 (509)
Q Consensus 261 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~ 339 (509)
... ++++|.+++.++. ..+...+++..+.++|.++... .|+.. .|..+ .
T Consensus 161 ae~-dL~KA~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i----------------~ 210 (906)
T PRK14720 161 EEE-DKEKAITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRI----------------E 210 (906)
T ss_pred HHh-hHHHHHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchHHHHH----------------H
Confidence 999 9999999988765 3366677888888888888875 33322 22222 2
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 010496 340 DIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACR 395 (509)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 395 (509)
+.+....+..--+.++..+...|....+++++..+++.+ ...| |.....-++.+|.
T Consensus 211 ~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 211 RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 222211122222344455556666666777777777665 3333 3445555555443
No 106
>PLN02789 farnesyltranstransferase
Probab=98.77 E-value=3.8e-06 Score=76.79 Aligned_cols=227 Identities=11% Similarity=0.056 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPD-YVTIISVLNACANVG-TLGIGLWIHRYVLKQDFKDNVKVCNTLIDL 259 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (509)
++..+-..+...++.++|+.++.++++. .|+ ...|.....++...| ++++++..++++++.+ +.+..+|+....+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHH
Confidence 3344444455566666666666666653 332 333444444444444 4566666666666554 4444555544444
Q ss_pred HHhcCCH--HHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc---CC
Q 010496 260 YSRCGCI--EFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHA---GL 331 (509)
Q Consensus 260 ~~~~g~~--~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---~~ 331 (509)
+.+.|+. ++++.+++++.+ .+..+|+...-++...|+++++++.++++++.++. |...|+.....+.+. |.
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~ 194 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGG 194 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccc
Confidence 4444432 344444444432 23344444444455555555555555555554322 233333332222221 11
Q ss_pred HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHh----cCCHHHHHH
Q 010496 332 IEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVEN-MPMKP-NEVVLGSLLAACRT----KGDIILAER 405 (509)
Q Consensus 332 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p-~~~~~~~l~~~~~~----~g~~~~a~~ 405 (509)
.+ ...++++++..+ +...| |...|+.+...+.. .++..+|.+
T Consensus 195 ~~--------------------------------~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~ 242 (320)
T PLN02789 195 LE--------------------------------AMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSS 242 (320)
T ss_pred cc--------------------------------ccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence 10 001233444422 23344 33455555555544 233455666
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcC------------------CchHHHHHHHHH
Q 010496 406 LMKYLVDLDPGVDSNYVLLANMYAAVG------------------KWDGAGKIRRTM 444 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~m 444 (509)
.+.++...+|.++.++..|+..|+... ..++|.++++.+
T Consensus 243 ~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 243 VCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred HHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 666666666666666777777776532 236688888777
No 107
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.75 E-value=3.9e-06 Score=80.94 Aligned_cols=201 Identities=15% Similarity=0.106 Sum_probs=160.1
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010496 246 FKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTA 325 (509)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 325 (509)
.+|--..-..+...+...|-...|..+|+++. .|...+.+|+..|+..+|..+..+-.++ +||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhh
Confidence 35555666788899999999999999998865 6777888999999999999999988874 8899999999988
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 010496 326 CSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILA 403 (509)
Q Consensus 326 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a 403 (509)
.....-+++|+++.+..... .-..+.....+.++++++.+.|+.. .+.| ...+|-.+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 88877888898888776531 1122223334578999999998764 6666 456888888888899999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEE
Q 010496 404 ERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHE 466 (509)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~ 466 (509)
.+.|...+...|++...|+.+..+|.+.|+..+|...+++..+.+.+ .|-.+.+..+.
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-----~w~iWENymlv 596 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-----HWQIWENYMLV 596 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-----CCeeeechhhh
Confidence 99999999999999999999999999999999999999998887643 23445544443
No 108
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.73 E-value=1.6e-06 Score=73.85 Aligned_cols=146 Identities=11% Similarity=0.111 Sum_probs=107.8
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 010496 289 VGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRL 368 (509)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 368 (509)
..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..+...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCH
Confidence 356677777665444322221 11 012235666777777777774 3355788888899999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 369 EDALNVVENM-PMKP-NEVVLGSLLAAC-RTKGD--IILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 369 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
++|...+++. ...| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..++..+.+.|++++|+..|++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999887 5566 566777777764 56676 58999999999999999999999999999999999999999999
Q ss_pred HHhCC
Q 010496 444 MKGRG 448 (509)
Q Consensus 444 m~~~~ 448 (509)
+.+..
T Consensus 170 aL~l~ 174 (198)
T PRK10370 170 VLDLN 174 (198)
T ss_pred HHhhC
Confidence 97764
No 109
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.70 E-value=0.0001 Score=73.96 Aligned_cols=359 Identities=11% Similarity=0.115 Sum_probs=199.6
Q ss_pred ccccccCCCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHH-----HHHHhhcCCCccchhHHHHHHHH
Q 010496 33 IQTNNSKSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFI-----TLLSGCADFPSQCLFLGAMIHGL 107 (509)
Q Consensus 33 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-----~ll~~~~~~~~~~~~~a~~~~~~ 107 (509)
.++-..+...|. .-+..+.++...+-+.+-+++++++.- .|++.+=+ .|+-...+ -+.....+..+.
T Consensus 974 v~tal~E~~dPe--~vS~tVkAfMtadLp~eLIELLEKIvL---~~S~Fse~~nLQnLLiLtAik---ad~trVm~YI~r 1045 (1666)
T KOG0985|consen 974 VQTALPETQDPE--EVSVTVKAFMTADLPNELIELLEKIVL---DNSVFSENRNLQNLLILTAIK---ADRTRVMEYINR 1045 (1666)
T ss_pred HHhcCCccCChH--HHHHHHHHHHhcCCcHHHHHHHHHHhc---CCcccccchhhhhhHHHHHhh---cChHHHHHHHHH
Confidence 344444444444 445678999999999999999999874 44443322 22222222 233333333333
Q ss_pred HHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC-------------------------CChHHHHHHHHHHHhC
Q 010496 108 VCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV-------------------------KSSFTWNAMIDGYMRR 162 (509)
Q Consensus 108 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~ 162 (509)
+...+ .|+ +.......+-+++|..+|+.... ..+..|..+..+-.+.
T Consensus 1046 LdnyD-a~~-------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1046 LDNYD-APD-------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQG 1117 (1666)
T ss_pred hccCC-chh-------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhc
Confidence 32221 121 33344445555566655554431 1334566666666666
Q ss_pred CCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010496 163 GDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVL 242 (509)
Q Consensus 163 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 242 (509)
|.+.+|.+-|-+ ..|+..|..+++...+.|.|++-.+++...++..-.|...+ .|+-+|++.+++.+.+++.
T Consensus 1118 ~~v~dAieSyik--adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi---- 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIK--ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI---- 1189 (1666)
T ss_pred CchHHHHHHHHh--cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh----
Confidence 666666665533 23555666666666666666666666666655544444332 4555666666665554443
Q ss_pred HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010496 243 KQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGA 322 (509)
Q Consensus 243 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 322 (509)
.-||......+.+-|...|.++.|.-+|. ++..|..+...+...|.+..|.+.-++. .+..||..+
T Consensus 1190 ---~gpN~A~i~~vGdrcf~~~~y~aAkl~y~-----~vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~V 1255 (1666)
T KOG0985|consen 1190 ---AGPNVANIQQVGDRCFEEKMYEAAKLLYS-----NVSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEV 1255 (1666)
T ss_pred ---cCCCchhHHHHhHHHhhhhhhHHHHHHHH-----HhhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHH
Confidence 23555555566666666666666665554 3446777777788888888777665543 245677777
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCC--CCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 010496 323 LTACSHAGLIEDGLRYFDIMKKIYRVS--PRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKG 398 (509)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 398 (509)
-.+|...+.+.-|. ..|+. ....-...|+..|...|-+++.+.+++.. ++.- ....|+.|.-.|++.
T Consensus 1256 cfaCvd~~EFrlAQ--------iCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky- 1326 (1666)
T KOG0985|consen 1256 CFACVDKEEFRLAQ--------ICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY- 1326 (1666)
T ss_pred HHHHhchhhhhHHH--------hcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-
Confidence 77777766554331 23432 34455677888888888888888888764 4332 233555555555443
Q ss_pred CHHHHHHHHHHHHh-cC-C------CCCchHHHHHHHHHHcCCchHHH
Q 010496 399 DIILAERLMKYLVD-LD-P------GVDSNYVLLANMYAAVGKWDGAG 438 (509)
Q Consensus 399 ~~~~a~~~~~~~~~-~~-~------~~~~~~~~l~~~~~~~g~~~~A~ 438 (509)
++++..+.++-.-. .+ | +....|.-+...|.+-..|+.|.
T Consensus 1327 kp~km~EHl~LFwsRvNipKviRA~eqahlW~ElvfLY~~y~eyDNAa 1374 (1666)
T KOG0985|consen 1327 KPEKMMEHLKLFWSRVNIPKVIRAAEQAHLWSELVFLYDKYEEYDNAA 1374 (1666)
T ss_pred CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 23333332222211 00 1 01234556666666655555543
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.70 E-value=1.9e-08 Score=57.61 Aligned_cols=34 Identities=26% Similarity=0.463 Sum_probs=31.7
Q ss_pred CCCCCCccchHHHHHHHHcCCChhHHHHHHHHHh
Q 010496 39 KSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMT 72 (509)
Q Consensus 39 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 72 (509)
+|..||+.+||+||.+||+.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678999999999999999999999999999984
No 111
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.69 E-value=4.2e-06 Score=83.32 Aligned_cols=371 Identities=14% Similarity=0.046 Sum_probs=191.7
Q ss_pred hhHHHHHHHHHhhCCCCCC-cccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHH
Q 010496 61 IAEAALEFTRMTLHGTNPN-HITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATV 139 (509)
Q Consensus 61 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (509)
...|+..|-+..+. .|+ ...|..|...|... .+...|.+.|....+.+ +++........+.|++..+++.|..
T Consensus 474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~--~Dm~RA~kCf~KAFeLD--atdaeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDS--DDMKRAKKCFDKAFELD--ATDAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCC--chhhhhHHHHHHHhhccccHHHHHH
Confidence 45555555555442 222 34566666666666 56667777777666553 5557777777788888888887777
Q ss_pred HHHhcCCCC-----hHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 010496 140 VFDAMRVKS-----SFTWNAMIDGYMRRGDIESAVRMFDEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISGV 211 (509)
Q Consensus 140 ~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~ 211 (509)
+.-..-+.+ ...|....-.|.+.++...|..-|+...+. |...|..+..+|...|++..|+++|.+... +
T Consensus 548 I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--L 625 (1238)
T KOG1127|consen 548 ICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--L 625 (1238)
T ss_pred HHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--c
Confidence 744433321 123334455566777777777777755433 566677788888888888888888877766 3
Q ss_pred CCCHhHHHHH--HHHHHccCCHHHHHHHHHHHHHcC------CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC-----
Q 010496 212 EPDYVTIISV--LNACANVGTLGIGLWIHRYVLKQD------FKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK----- 278 (509)
Q Consensus 212 ~p~~~~~~~l--~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----- 278 (509)
.|+. +|... ....+..|.+.++...+...+... ...-..++-.+...+.-.|-..+|..++++-.+
T Consensus 626 rP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 626 RPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred CcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 4543 22222 223466777777777777665431 111122333333333333444444444433221
Q ss_pred ------CChhhHHHHHHHHH---hCC--Ch-HHHHHHH-HHHHHCCCCC--------------------CHHHHHHHHHH
Q 010496 279 ------RTLVSWNSIIVGFA---VNG--FV-GEALEYF-NSMQKEGFKP--------------------DGVSFTGALTA 325 (509)
Q Consensus 279 ------~~~~~~~~l~~~~~---~~~--~~-~~A~~~~-~~m~~~g~~p--------------------~~~~~~~li~~ 325 (509)
.+...|-.+..+|. ... -+ .....++ .+....+.-| +..+|..|+..
T Consensus 705 l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGin 784 (1238)
T KOG1127|consen 705 LIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGIN 784 (1238)
T ss_pred HHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHH
Confidence 11122222221111 100 00 0000000 1111111111 11222222222
Q ss_pred Hhc----c----CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 010496 326 CSH----A----GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACR 395 (509)
Q Consensus 326 ~~~----~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 395 (509)
|.+ . .+...|+..+++..+. ..-+...|+.|.-. ...|.+.-|...|-+. -..| ...+|..+.-.+.
T Consensus 785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l 861 (1238)
T KOG1127|consen 785 YLRYFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVL 861 (1238)
T ss_pred HHHHHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEE
Confidence 221 0 1122444555544421 11233344444332 4445555555444333 2233 3446666666677
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 396 TKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 396 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
...+++.|...|.+...+.|.+...|.-.+......|+.-++..+|..
T Consensus 862 ~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 862 ENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 777777777777777777777777777766666677777777777765
No 112
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.68 E-value=8.1e-06 Score=84.13 Aligned_cols=220 Identities=15% Similarity=0.082 Sum_probs=150.2
Q ss_pred CCchHHHHHHHHHHHhcCCchHHHHHHHhcCCC--------ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC-C-HhHHH
Q 010496 115 RNNVMVGTALLDMYAKFGRMDLATVVFDAMRVK--------SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR-D-AISWT 184 (509)
Q Consensus 115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~ 184 (509)
|++...|-.-|....+.++.++|++++++.... -...|.++++.-..-|.-+...++|++..+- | -..|.
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~ 1534 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHL 1534 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHH
Confidence 666777777777778888888888888877632 2346777777766677777777777776554 3 33567
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--cHhHHHHHHHHHHh
Q 010496 185 ALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKD--NVKVCNTLIDLYSR 262 (509)
Q Consensus 185 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~ 262 (509)
.|...|.+.+++++|.++|+.|.+. ..-....|...+..+.+.++-+.|..++.++++.- |. ........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~l-Pk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSL-PKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhc-chhhhHHHHHHHHHHHhh
Confidence 7778888888888888888888765 33456677777777788888788888887777652 22 34455556666677
Q ss_pred cCCHHHHHHHHHhccCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCCHHHHH
Q 010496 263 CGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGV--SFTGALTACSHAGLIEDGL 336 (509)
Q Consensus 263 ~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~~~~~~a~ 336 (509)
.|+.+++..+|+..... -...|+..+..-.++|+.+.+..+|++....++.|-.. .|...+..--+.|+-..++
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 78888877777776633 45678888888788888888888888877776665432 3444444333344443333
No 113
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.67 E-value=0.00027 Score=76.19 Aligned_cols=323 Identities=10% Similarity=0.002 Sum_probs=202.3
Q ss_pred HHHHHhcCCchHHHHHHHhcCCCChH--HHHHHHHHHHhCCCHHHHHHHHhcCCC----CCHhHHHHHHHHHHHcCChHH
Q 010496 125 LDMYAKFGRMDLATVVFDAMRVKSSF--TWNAMIDGYMRRGDIESAVRMFDEMPV----RDAISWTALLNGFVKRGYFEE 198 (509)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~ 198 (509)
...+...|++.+|............. ........+...|+++.+..++..+.. .++.........+...|++++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~ 427 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSE 427 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHH
Confidence 34445556666555555444333111 112223345567888888888887742 133334445566678899999
Q ss_pred HHHHHHHHHHcC--C----CCCH--hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc----HhHHHHHHHHHHhcCCH
Q 010496 199 ALECFREMQISG--V----EPDY--VTIISVLNACANVGTLGIGLWIHRYVLKQDFKDN----VKVCNTLIDLYSRCGCI 266 (509)
Q Consensus 199 A~~~~~~m~~~~--~----~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 266 (509)
|..++......- . .+.. .....+...+...|+++.|...+++..+.-...+ ....+.+...+...|++
T Consensus 428 a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~ 507 (903)
T PRK04841 428 VNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL 507 (903)
T ss_pred HHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH
Confidence 999998875431 0 1111 1222233456789999999999998876421112 23456677778889999
Q ss_pred HHHHHHHHhccC-------CC--hhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHhccC
Q 010496 267 EFARQVFQRMHK-------RT--LVSWNSIIVGFAVNGFVGEALEYFNSMQKE----GFK--P-DGVSFTGALTACSHAG 330 (509)
Q Consensus 267 ~~a~~~~~~~~~-------~~--~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~~ 330 (509)
++|...+++... +. ..++..+...+...|++++|...+++.... +.. + ....+..+...+...|
T Consensus 508 ~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G 587 (903)
T PRK04841 508 ARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWA 587 (903)
T ss_pred HHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 999999888752 11 134455667788899999999998886652 211 1 1233444555667789
Q ss_pred CHHHHHHHHHHhHHhcC-CCC--CHHHHHHHHHHHHhcCChHHHHHHHHhCC----CCCCHHHH-----HHHHHHHHhcC
Q 010496 331 LIEDGLRYFDIMKKIYR-VSP--RIEHYGCIVDLYSRAGRLEDALNVVENMP----MKPNEVVL-----GSLLAACRTKG 398 (509)
Q Consensus 331 ~~~~a~~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~-----~~l~~~~~~~g 398 (509)
++++|...+.+...... ..+ ....+..+...+...|++++|.+.+.+.. .......+ ...+..+...|
T Consensus 588 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 667 (903)
T PRK04841 588 RLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTG 667 (903)
T ss_pred CHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCC
Confidence 99999999988763211 112 23345556677888999999998887751 11111111 11123445688
Q ss_pred CHHHHHHHHHHHHhcCCCCCch----HHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 399 DIILAERLMKYLVDLDPGVDSN----YVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+.+.|.+.+.......+..... +..++.++...|++++|...+++....
T Consensus 668 ~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~ 720 (903)
T PRK04841 668 DKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN 720 (903)
T ss_pred CHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999987765532222211 457888899999999999999988654
No 114
>PLN02789 farnesyltranstransferase
Probab=98.65 E-value=5.4e-05 Score=69.33 Aligned_cols=209 Identities=11% Similarity=0.033 Sum_probs=147.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH
Q 010496 151 TWNAMIDGYMRRGDIESAVRMFDEMPVR---DAISWTALLNGFVKRG-YFEEALECFREMQISGVEPDYVTIISVLNACA 226 (509)
Q Consensus 151 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 226 (509)
++..+-..+...++.++|+.+...+... +..+|+....++...| ++++++..++++.+.+ +-+..+|......+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 4555666677788999999999988654 4455666666777777 5799999999999864 335556665555566
Q ss_pred ccCCH--HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHhC---CCh-
Q 010496 227 NVGTL--GIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVN---GFV- 297 (509)
Q Consensus 227 ~~~~~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~---~~~- 297 (509)
+.|+. +.+..+++++++.+ +.+..+|+...-++...|+++++++.++++.+. +..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccc
Confidence 66653 67889999999887 788999999999999999999999999998753 567787777666554 222
Q ss_pred ---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh
Q 010496 298 ---GEALEYFNSMQKEGFKPDGVSFTGALTACSHA----GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSR 364 (509)
Q Consensus 298 ---~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 364 (509)
++++....+++... +-|...|+.+...+... +...+|..++.++.+ .-+.+......|++.|+.
T Consensus 197 ~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 197 AMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred ccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHHHHHHHHh
Confidence 45666666666652 23555666666666552 344557777777652 123345666777777764
No 115
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.64 E-value=4.5e-06 Score=84.22 Aligned_cols=208 Identities=12% Similarity=0.050 Sum_probs=136.8
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHH
Q 010496 279 RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDG-VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGC 357 (509)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 357 (509)
.++..+..|.....+.|.+++|+.+++...+. .|+. .....+...+.+.+++++|...+++... .-+-+......
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 35778888888888888888888888888875 5554 4556677788888888888888888884 33345667777
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCch
Q 010496 358 IVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWD 435 (509)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 435 (509)
+..++.+.|++++|.++|+++ ...|+ ..++..+..++...|+.++|...|+++++...+-...|+.++. +..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~~ 233 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DLN 233 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HHH
Confidence 888888888888888888887 34444 6688888888888888888888888888866554444444332 233
Q ss_pred HHHHHHHHHHhCCCccCCcccEEEECCEEE---------------------EEecCCCCCCchHHHHHHHHHHHHHHHHc
Q 010496 436 GAGKIRRTMKGRGIQKKPGLSSIEIGSGIH---------------------EFMAGDRSHIESEHIYSMLELLSFDLKLC 494 (509)
Q Consensus 436 ~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 494 (509)
.-...++++.-.+......+..+.++..+. .++.... ........+-.+...+.+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rIl~vi~sl---~~GGAEr~~~~La~~l~~~ 310 (694)
T PRK15179 234 ADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRRRNAEYDAGPESFVGPVLMINGSL---GAGGAERQFVNTAVALQSA 310 (694)
T ss_pred HHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhcCcccccCCCCCCcceEEEEeCCC---CCCcHHHHHHHHHHHHHhc
Confidence 334555555444333222222222211111 1122211 2235556777777888888
Q ss_pred CccCC
Q 010496 495 GYVPE 499 (509)
Q Consensus 495 g~~pd 499 (509)
++.|+
T Consensus 311 ~~~~~ 315 (694)
T PRK15179 311 IQQGQ 315 (694)
T ss_pred ccCcc
Confidence 77655
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.63 E-value=2.8e-06 Score=81.89 Aligned_cols=233 Identities=13% Similarity=0.085 Sum_probs=166.7
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCC--CCCHhHHHHHHHHHHHcCC
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMP--VRDAISWTALLNGFVKRGY 195 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~ 195 (509)
...-..+...+...|-...|..+|+++ ..|...+..|...|+-.+|..+..+.. ++++..|..+.+......-
T Consensus 398 Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 398 WQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred chHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 344556777888888888888888875 457777888888888888888776554 3477788888887777777
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010496 196 FEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQR 275 (509)
Q Consensus 196 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 275 (509)
+++|.++.+..... .-..+.....+.+++.++.+.|+.-.+.+ +.-..+|..+..++.+.++++.|.+.|..
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~r 544 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHR 544 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHH
Confidence 88888887765432 11112222334688888888888887776 66778888888888888899888888887
Q ss_pred cc--CC-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH
Q 010496 276 MH--KR-TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRI 352 (509)
Q Consensus 276 ~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 352 (509)
.. +| +...||.+-.+|.+.++-.+|...+.+..+.+.. +-..|...+....+.|.+++|++.+.++........|.
T Consensus 545 cvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~ 623 (777)
T KOG1128|consen 545 CVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDD 623 (777)
T ss_pred HhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccc
Confidence 66 33 4568888989999999988999988888886533 33445555556678888898888888877533333354
Q ss_pred HHHHHHHHHHHh
Q 010496 353 EHYGCIVDLYSR 364 (509)
Q Consensus 353 ~~~~~li~~~~~ 364 (509)
.+...++....+
T Consensus 624 ~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 624 EVLLIIVRTVLE 635 (777)
T ss_pred hhhHHHHHHHHh
Confidence 455555544433
No 117
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.63 E-value=2.5e-06 Score=68.59 Aligned_cols=121 Identities=9% Similarity=0.007 Sum_probs=72.3
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 010496 302 EYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PM 380 (509)
Q Consensus 302 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 380 (509)
.++++.++. .|+. +..+..++...|++++|...|+.+.. --+.+...|..+..++.+.|++++|...|++. ..
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344444443 3332 33445556666777777777766662 22235566666666666677777777666665 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 010496 381 KP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMY 428 (509)
Q Consensus 381 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 428 (509)
.| +...+..+..++...|++++|...|+++++..|+++..+...+.+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 44 4556666666666777777777777777777776666665555443
No 118
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.63 E-value=1.2e-06 Score=70.54 Aligned_cols=108 Identities=11% Similarity=-0.062 Sum_probs=92.7
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010496 336 LRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDL 413 (509)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 413 (509)
..++++.. .+.|+. +..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++++.
T Consensus 13 ~~~~~~al---~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLL---SVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH---HcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34556655 234543 556788889999999999999987 5566 6778999999999999999999999999999
Q ss_pred CCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 414 DPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 414 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
+|.++..+..++.++.+.|++++|+..|++..+..
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999998754
No 119
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.60 E-value=0.0004 Score=65.18 Aligned_cols=78 Identities=8% Similarity=-0.034 Sum_probs=51.0
Q ss_pred CCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCC--ChHHHHH
Q 010496 77 NPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVK--SSFTWNA 154 (509)
Q Consensus 77 ~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~ 154 (509)
+-|..+|+.|++-+.. ...+..++.++++... .|..+..|..-+..-.+.++++..+++|.+.... +...|..
T Consensus 17 P~di~sw~~lire~qt---~~~~~~R~~YEq~~~~--FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~l 91 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQT---QPIDKVRETYEQLVNV--FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKL 91 (656)
T ss_pred CccHHHHHHHHHHHcc---CCHHHHHHHHHHHhcc--CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHH
Confidence 3366777777765433 4566777777766544 4666777777777777777777777777776543 5566666
Q ss_pred HHHHH
Q 010496 155 MIDGY 159 (509)
Q Consensus 155 l~~~~ 159 (509)
.++.-
T Consensus 92 Yl~YV 96 (656)
T KOG1914|consen 92 YLSYV 96 (656)
T ss_pred HHHHH
Confidence 65543
No 120
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.59 E-value=8.6e-06 Score=72.23 Aligned_cols=180 Identities=14% Similarity=0.064 Sum_probs=126.7
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcH---hHHHHHHHHHHhcCCHHHHHHHHHhccCC---Chh---hH
Q 010496 214 DYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNV---KVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLV---SW 284 (509)
Q Consensus 214 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~---~~ 284 (509)
....+..+...+...|+++.|...++++.... |.+. .++..+..++...|++++|...++++.+. +.. ++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45667788888999999999999999998865 3332 46788899999999999999999998643 222 45
Q ss_pred HHHHHHHHhC--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHH
Q 010496 285 NSIIVGFAVN--------GFVGEALEYFNSMQKEGFKPDGV-SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHY 355 (509)
Q Consensus 285 ~~l~~~~~~~--------~~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 355 (509)
..+..++... |++++|.+.|+.+... .|+.. ....+... .. . ..... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~------~~~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---L------RNRLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---H------HHHHH---------HHH
Confidence 5556666654 7889999999999886 44432 22222111 00 0 00000 112
Q ss_pred HHHHHHHHhcCChHHHHHHHHhC-CCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010496 356 GCIVDLYSRAGRLEDALNVVENM-PMK---P-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDP 415 (509)
Q Consensus 356 ~~li~~~~~~g~~~~A~~~~~~~-~~~---p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 415 (509)
..+...|.+.|++.+|...+++. ... | ....+..++.++...|++++|..+++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 24566788899999999888876 222 3 245788888899999999999998888876654
No 121
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.57 E-value=7.5e-05 Score=63.62 Aligned_cols=118 Identities=15% Similarity=0.086 Sum_probs=51.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----c
Q 010496 254 NTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSH----A 329 (509)
Q Consensus 254 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~ 329 (509)
..-...|+..|++++|++...... +....-.=...+.+..+.+-|.+.+++|... -+..|.+.|..++.+ .
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~gg 186 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGG 186 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccc
Confidence 333444555555555555554421 2222222223334444555555555555542 133444444443332 2
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC
Q 010496 330 GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM 378 (509)
Q Consensus 330 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 378 (509)
+.+.+|.-+|+++.+ ..+|+..+.+....++...|++++|..++++.
T Consensus 187 ek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea 233 (299)
T KOG3081|consen 187 EKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA 233 (299)
T ss_pred hhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence 234444444554442 23444444444444444444444444444443
No 122
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.56 E-value=1.7e-05 Score=67.49 Aligned_cols=155 Identities=13% Similarity=0.128 Sum_probs=113.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010496 256 LIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDG 335 (509)
Q Consensus 256 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 335 (509)
.+-.|...|+++.+....+.+..+. ..+...++.+++...++..++.. +.|...|..+...|...|++++|
T Consensus 22 ~~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 22 CVGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3456677777776655443332221 01223566778888888877763 45777888888999999999999
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHH-HHhcCC--hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010496 336 LRYFDIMKKIYRVSPRIEHYGCIVDL-YSRAGR--LEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYL 410 (509)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 410 (509)
...|++..+ -.+.+...+..+..+ +...|+ .++|.+++++. ...| +...+..+...+...|++++|...|+++
T Consensus 93 ~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999884 223367778888876 467777 58999999887 5566 5668888888999999999999999999
Q ss_pred HhcCCCCCchH
Q 010496 411 VDLDPGVDSNY 421 (509)
Q Consensus 411 ~~~~~~~~~~~ 421 (509)
++..|.+..-+
T Consensus 171 L~l~~~~~~r~ 181 (198)
T PRK10370 171 LDLNSPRVNRT 181 (198)
T ss_pred HhhCCCCccHH
Confidence 99888865444
No 123
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.55 E-value=1.6e-05 Score=67.60 Aligned_cols=155 Identities=13% Similarity=0.123 Sum_probs=110.0
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh
Q 010496 285 NSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSR 364 (509)
Q Consensus 285 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 364 (509)
..+-..+...|+-+....+..+.... .+-|.......+....+.|++..|...++++.. .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44455566667777766666665442 223444555567777778888888888887773 445677778888888888
Q ss_pred cCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHH
Q 010496 365 AGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRR 442 (509)
Q Consensus 365 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 442 (509)
.|++++|..-|.+. .+.| +...++.+...+.-.|+.+.|..++.......+.+..+-..++.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 88888887777665 4555 455777777777788888888888888877777777777888888888888888877654
No 124
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.54 E-value=3.7e-05 Score=65.40 Aligned_cols=245 Identities=11% Similarity=0.133 Sum_probs=156.9
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 010496 187 LNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCI 266 (509)
Q Consensus 187 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 266 (509)
++-+.-.|++..++..-...... +-+...-..+.++|...|.+..... ++.. +-.+.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~~---eI~~-~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVIS---EIKE-GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccccc---cccc-ccCChHHHHHHHHHHhhCcchh
Confidence 34455567777776665554433 1333444445566666665443322 1111 1123333444444433334443
Q ss_pred HHHH-HHHHhccCC----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010496 267 EFAR-QVFQRMHKR----TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDI 341 (509)
Q Consensus 267 ~~a~-~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 341 (509)
+.-. ++.+.+..+ +......-...|+..|++++|++...... ....... =+..+.+..+.+-|.+.+++
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al--~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAAL--NVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3332 233333322 22233334456889999999999988622 2222222 23446677889999999999
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010496 342 MKKIYRVSPRIEHYGCIVDLYSR----AGRLEDALNVVENM--PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDP 415 (509)
Q Consensus 342 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 415 (509)
|.+ + .+..+.+-|..++.+ .+.+.+|.-+|+++ +..|+..+.+....++...|++++|..+++.++..++
T Consensus 163 mq~---i-ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQ---I-DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHc---c-chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 984 2 344556656666554 46788999999999 4789999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHcCCchHH-HHHHHHHHhC
Q 010496 416 GVDSNYVLLANMYAAVGKWDGA-GKIRRTMKGR 447 (509)
Q Consensus 416 ~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~~~ 447 (509)
.++.+...++.+-...|.-.++ .+.+.+++..
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 9999999999888888887654 4456666543
No 125
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.52 E-value=2.8e-05 Score=66.17 Aligned_cols=157 Identities=15% Similarity=0.115 Sum_probs=71.5
Q ss_pred CCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHH
Q 010496 114 DRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV---KSSFTWNAMIDGYMRRGDIESAVRMFDEMPV---RDAISWTALL 187 (509)
Q Consensus 114 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li 187 (509)
.|.+..+ ..+...+...|+-+....+...... .|......++....+.|++..|...|++... +|..+|+.+.
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg 141 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG 141 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence 3443444 4445555555555555555444321 1333333344444555555555555544332 2444555555
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 010496 188 NGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIE 267 (509)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 267 (509)
-+|.+.|+++.|..-|.+..+.. .-+...++.+.-.+.-.|+++.|..++......+ +-+..+-..+..+....|+++
T Consensus 142 aaldq~Gr~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 142 AALDQLGRFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred HHHHHccChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChH
Confidence 55555555555555555444421 1123334444444444455555555544444433 234444444444444445544
Q ss_pred HHHHHH
Q 010496 268 FARQVF 273 (509)
Q Consensus 268 ~a~~~~ 273 (509)
+|..+.
T Consensus 220 ~A~~i~ 225 (257)
T COG5010 220 EAEDIA 225 (257)
T ss_pred HHHhhc
Confidence 444443
No 126
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.52 E-value=6.9e-05 Score=69.47 Aligned_cols=135 Identities=14% Similarity=0.177 Sum_probs=73.6
Q ss_pred HHhCCCHHHHHHHHhcCCC--C-CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccCCHHHH
Q 010496 159 YMRRGDIESAVRMFDEMPV--R-DAISWTALLNGFVKRGYFEEALECFREMQISGVEPD-YVTIISVLNACANVGTLGIG 234 (509)
Q Consensus 159 ~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a 234 (509)
+...|++++|+..++.+.. | |+..+......+.+.|+..+|.+.++.+... .|+ ......+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHH
Confidence 3445556666665555432 2 4445555555666666666666666666553 344 33334445556666666666
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010496 235 LWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKE 310 (509)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 310 (509)
..+++...... +.++..|..|.++|...|+..++..... ..+...|+++.|...+....+.
T Consensus 394 i~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~A--------------E~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 394 IRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARA--------------EGYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHH--------------HHHHhCCCHHHHHHHHHHHHHh
Confidence 66666555554 5555566666666666665555544332 2344556666666555555543
No 127
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.51 E-value=3.7e-05 Score=78.56 Aligned_cols=151 Identities=12% Similarity=0.061 Sum_probs=91.0
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010496 249 NVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTA 325 (509)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 325 (509)
+..++..+..+|-+.|+.++|..+++++.+ .|+.+.|.+...|... +.++|++++.+.+..
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------- 178 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------- 178 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------
Confidence 334555666666666666666666666553 2445566666666666 666666666655443
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010496 326 CSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAER 405 (509)
Q Consensus 326 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 405 (509)
+...+++..+..+|.++.. ..+.+...+..+.+..... .+..--..++.-+-..|...++++++..
T Consensus 179 ~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~------------~~~~~~~~~~~~l~~~y~~~~~~~~~i~ 244 (906)
T PRK14720 179 FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH------------REFTRLVGLLEDLYEPYKALEDWDEVIY 244 (906)
T ss_pred HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh------------hccchhHHHHHHHHHHHhhhhhhhHHHH
Confidence 3444456666666666662 1122222222222222111 1222233455556667788889999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHH
Q 010496 406 LMKYLVDLDPGVDSNYVLLANMYA 429 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~~ 429 (509)
+++.+++.+|++..+..-++.+|.
T Consensus 245 iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 245 ILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHhcCCcchhhHHHHHHHHH
Confidence 999999999999888888888887
No 128
>PF12854 PPR_1: PPR repeat
Probab=98.50 E-value=2.6e-07 Score=52.87 Aligned_cols=32 Identities=34% Similarity=0.527 Sum_probs=19.5
Q ss_pred CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010496 245 DFKDNVKVCNTLIDLYSRCGCIEFARQVFQRM 276 (509)
Q Consensus 245 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (509)
|++||..+|+.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45566666666666666666666666666655
No 129
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.48 E-value=0.002 Score=64.41 Aligned_cols=390 Identities=15% Similarity=0.145 Sum_probs=224.8
Q ss_pred HHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Q 010496 54 RHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGR 133 (509)
Q Consensus 54 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 133 (509)
.....+++..|+....++.++ .|+. .|..++.++.....|..++|..+++.....+ +++..+...+-.+|...|+
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~--~~D~~tLq~l~~~y~d~~~ 92 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLK--GTDDLTLQFLQNVYRDLGK 92 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCC--CCchHHHHHHHHHHHHHhh
Confidence 345678999999999998874 4443 4666777765443388888887777666554 4468999999999999999
Q ss_pred chHHHHHHHhcCCC--ChHHHHHHHHHHHhCCCHH----HHHHHHhcCCCCCHhHHHHHHHHHHHcC-C---------hH
Q 010496 134 MDLATVVFDAMRVK--SSFTWNAMIDGYMRRGDIE----SAVRMFDEMPVRDAISWTALLNGFVKRG-Y---------FE 197 (509)
Q Consensus 134 ~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~----~A~~~~~~~~~~~~~~~~~li~~~~~~~-~---------~~ 197 (509)
.++|..++++..+. +......+..+|.|.+.+. .|.++++..++. +..+-++++.+.+.- . ..
T Consensus 93 ~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~-~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 93 LDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKR-AYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred hhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc-cchHHHHHHHHHHhccCCcccccchhHH
Confidence 99999999999864 5455556667777777664 577777766543 444444555444321 1 23
Q ss_pred HHHHHHHHHHHcCCCC-CHhHHHHHHHHHHccCCHHHHHHHH-HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010496 198 EALECFREMQISGVEP-DYVTIISVLNACANVGTLGIGLWIH-RYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQR 275 (509)
Q Consensus 198 ~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 275 (509)
-|...++.+.+.+-+. +..-...-...+...|++++|..++ ....+.-...+...-+.-++.+...++|++..++-.+
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 3555566665543111 2222222344556778899999988 3444443345555566778888888888888777777
Q ss_pred ccCCChhhHHHHHHHHH----------------hCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHH-
Q 010496 276 MHKRTLVSWNSIIVGFA----------------VNGFVGEALEYFNSMQKEG-FKPDGVSFTGALTACSHAGLIEDGLR- 337 (509)
Q Consensus 276 ~~~~~~~~~~~l~~~~~----------------~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~- 337 (509)
+...+..-|...+..+. ..+..+...+..++..... -.|-...+. +..-+-..|+.+++..
T Consensus 252 Ll~k~~Ddy~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~le-l~kr~~~~gd~ee~~~~ 330 (932)
T KOG2053|consen 252 LLEKGNDDYKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLE-LDKRYKLIGDSEEMLSY 330 (932)
T ss_pred HHHhCCcchHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHH-HHHHhcccCChHHHHHH
Confidence 65432221333222111 1122233333333322221 111111111 1111122344444322
Q ss_pred -----------------------------HHHHhHHhcCCCCCHH-------HHHHHHHHHHhcCC-----hHHHHHHHH
Q 010496 338 -----------------------------YFDIMKKIYRVSPRIE-------HYGCIVDLYSRAGR-----LEDALNVVE 376 (509)
Q Consensus 338 -----------------------------~~~~~~~~~~~~~~~~-------~~~~li~~~~~~g~-----~~~A~~~~~ 376 (509)
++.... +..++.. .+...+..-.-.|. -+.-..++.
T Consensus 331 y~~kfg~kpcc~~Dl~~yl~~l~~~q~~~l~~~l~---~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~ 407 (932)
T KOG2053|consen 331 YFKKFGDKPCCAIDLNHYLGHLNIDQLKSLMSKLV---LADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSILAYVR 407 (932)
T ss_pred HHHHhCCCcHhHhhHHHhhccCCHHHHHHHHHHhh---ccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHHHHHH
Confidence 222222 1111111 01111111122221 112222222
Q ss_pred hC------C------CCCCH---------HHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 010496 377 NM------P------MKPNE---------VVLGSLLAACRTKGD---IILAERLMKYLVDLDPGVDSNYVLLANMYAAVG 432 (509)
Q Consensus 377 ~~------~------~~p~~---------~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 432 (509)
+. + .-|.. -+.+.|+..+.+.++ +-+|+-+++......|.+...-..+++.|+-.|
T Consensus 408 kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lG 487 (932)
T KOG2053|consen 408 KLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLG 487 (932)
T ss_pred HHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhc
Confidence 21 1 11221 145667788888876 456777888888888988888889999999999
Q ss_pred CchHHHHHHHHHHhCCCccCC
Q 010496 433 KWDGAGKIRRTMKGRGIQKKP 453 (509)
Q Consensus 433 ~~~~A~~~~~~m~~~~~~~~~ 453 (509)
-+..|.++|+.|.-+.++.+.
T Consensus 488 a~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 488 AFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred CChhHHHHHHhcchHHhhhcc
Confidence 999999999999777766543
No 130
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.48 E-value=5.2e-06 Score=65.67 Aligned_cols=119 Identities=10% Similarity=-0.095 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYA 429 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 429 (509)
....-.+...+...|++++|..+|+-. .+.| +..-|..|.-++-..|++++|+..|.++..++|+++..+..++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 344555666778899999999999987 5566 56688889999999999999999999999999999999999999999
Q ss_pred HcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHH
Q 010496 430 AVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKL 493 (509)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~ 493 (509)
..|+.+.|.+.|+..+...- .+|+...+....+.+++.+.+
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~~-----------------------~~~~~~~l~~~A~~~L~~l~~ 155 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRICG-----------------------EVSEHQILRQRAEKMLQQLSD 155 (157)
T ss_pred HcCCHHHHHHHHHHHHHHhc-----------------------cChhHHHHHHHHHHHHHHhhc
Confidence 99999999999998877531 156666666777777666654
No 131
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.47 E-value=6.3e-05 Score=75.33 Aligned_cols=393 Identities=11% Similarity=-0.011 Sum_probs=241.2
Q ss_pred chHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 010496 47 QWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLD 126 (509)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 126 (509)
.|..|...|+...+...|...|+...+.+ .-+......+...+++. .+.+.|..+.-..-+......-...|..+.-
T Consensus 494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~--~~we~a~~I~l~~~qka~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 494 AFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEE--STWEEAFEICLRAAQKAPAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhcc--ccHHHHHHHHHHHhhhchHHHHHhhhhhccc
Confidence 67888888888888899999999988743 22566677788888888 8999998884444333221111233444555
Q ss_pred HHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHH---HHHHHHHHHcCChHHHH
Q 010496 127 MYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISW---TALLNGFVKRGYFEEAL 200 (509)
Q Consensus 127 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~A~ 200 (509)
.|.+.+++..|+.-|+....- |...|..+..+|.+.|++..|.++|.+...-++..+ .-.....+..|.+.+|+
T Consensus 571 yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeal 650 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEAL 650 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHH
Confidence 677889999999999987643 667888899999999999999999977655433322 22334456788999999
Q ss_pred HHHHHHHHcC------CCCCHhHHHHHHHHHHccCCHHHHHHHHHH-------HHHcCCCCcHhHHHHHHHHHHh-----
Q 010496 201 ECFREMQISG------VEPDYVTIISVLNACANVGTLGIGLWIHRY-------VLKQDFKDNVKVCNTLIDLYSR----- 262 (509)
Q Consensus 201 ~~~~~m~~~~------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~l~~~~~~----- 262 (509)
..+....... ..--..++..+...+...|-..++..+++. ........+...|-.+.+++.-
T Consensus 651 d~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q~e 730 (1238)
T KOG1127|consen 651 DALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQEE 730 (1238)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHHhc
Confidence 8888775431 111122333333333333333333333332 2222212222222222222111
Q ss_pred ------------------cCCH---H---HHHHHHHhcc--CCChhhHHHHHHHHHh--------CCChHHHHHHHHHHH
Q 010496 263 ------------------CGCI---E---FARQVFQRMH--KRTLVSWNSIIVGFAV--------NGFVGEALEYFNSMQ 308 (509)
Q Consensus 263 ------------------~g~~---~---~a~~~~~~~~--~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~m~ 308 (509)
.+.. + -+.+.+-.-. -.+..+|..++..|.+ ..+...|+..+.+.+
T Consensus 731 ~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV 810 (1238)
T KOG1127|consen 731 PSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAV 810 (1238)
T ss_pred ccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 1110 0 0001110000 0134456666555443 223457888888888
Q ss_pred HCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHH
Q 010496 309 KEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVV 386 (509)
Q Consensus 309 ~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 386 (509)
+.. .-+..+|+.|. .....|++.-+...|-+-.. ..+....+|..+...+.+..+++.|...|... .+.| |...
T Consensus 811 ~L~-ann~~~WnaLG-Vlsg~gnva~aQHCfIks~~--sep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~ 886 (1238)
T KOG1127|consen 811 SLC-ANNEGLWNALG-VLSGIGNVACAQHCFIKSRF--SEPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQ 886 (1238)
T ss_pred HHh-hccHHHHHHHH-Hhhccchhhhhhhhhhhhhh--ccccchhheeccceeEEecccHHHhhHHHHhhhhcCchhhHH
Confidence 752 33555666554 45777888888877766652 33446778999999999999999999999988 4666 5567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-----CCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 387 LGSLLAACRTKGDIILAERLMKYLVDLDPG-----VDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
|..........|+.-++..+|..--+.... .-..|.+........|+.++-+...+++-.
T Consensus 887 WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~s 951 (1238)
T KOG1127|consen 887 WLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISS 951 (1238)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhh
Confidence 766666667889999999998874443322 112344555556677887777776665543
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=0.00016 Score=61.24 Aligned_cols=167 Identities=17% Similarity=0.242 Sum_probs=112.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHH---HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 010496 253 CNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNS---IIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHA 329 (509)
Q Consensus 253 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 329 (509)
|..++-+....|+.+.|..+++.+...-+.++.. -.-.+-..|++++|+++|+.+++.. +.|..++..-+...-..
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~ 133 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ 133 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence 4444555556666666666666655322221111 1122345678888888888888764 34556666555566667
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHH
Q 010496 330 GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKG---DIILAE 404 (509)
Q Consensus 330 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g---~~~~a~ 404 (509)
|+.-+|++-+....+ .+..|...|..+...|...|++++|.-.++++ -..| +...+..+...+.-.| +.+.+.
T Consensus 134 GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar 211 (289)
T KOG3060|consen 134 GKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR 211 (289)
T ss_pred CCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 777788888888875 56678899999999999999999999999887 3556 4445555555544333 678888
Q ss_pred HHHHHHHhcCCCCCchHH
Q 010496 405 RLMKYLVDLDPGVDSNYV 422 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~ 422 (509)
++|.+++++.|.+...+.
T Consensus 212 kyy~~alkl~~~~~ral~ 229 (289)
T KOG3060|consen 212 KYYERALKLNPKNLRALF 229 (289)
T ss_pred HHHHHHHHhChHhHHHHH
Confidence 999999999886544433
No 133
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.41 E-value=0.00023 Score=66.16 Aligned_cols=118 Identities=19% Similarity=0.195 Sum_probs=83.8
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 010496 326 CSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKGDIILA 403 (509)
Q Consensus 326 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a 403 (509)
+...|.++.|+..+..+.+ ..+-|+..+....+.+.+.++.++|.+.++++ ...|+ ......+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 4456777778877777774 33445666666677777888888888877776 55665 44566667777788888888
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010496 404 ERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMK 445 (509)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 445 (509)
+.+++.....+|.++..|..|+++|...|+..+|.....+..
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 888888877778777778888777777777666666555543
No 134
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.38 E-value=7.7e-06 Score=65.39 Aligned_cols=96 Identities=21% Similarity=0.202 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYA 429 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 429 (509)
......+...+...|++++|.+.++.+ ...| +...+..+...+...|++++|...++++++.+|.++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 445556666777778888887777775 3334 55677777777778888888888888888888887778888888888
Q ss_pred HcCCchHHHHHHHHHHhC
Q 010496 430 AVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~ 447 (509)
..|++++|.+.|++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888777664
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.33 E-value=0.003 Score=59.57 Aligned_cols=388 Identities=13% Similarity=0.102 Sum_probs=214.3
Q ss_pred CCCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCC-cccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCc
Q 010496 39 KSTVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPN-HITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNN 117 (509)
Q Consensus 39 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 117 (509)
+..+-|+.+|+.||+-+-.+ ..+++.+.++++.. +-|+ ...|..-+..-... .+++....+|.+.+..-+.
T Consensus 14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~--~FP~s~r~W~~yi~~El~s--kdfe~VEkLF~RCLvkvLn--- 85 (656)
T KOG1914|consen 14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVN--VFPSSPRAWKLYIERELAS--KDFESVEKLFSRCLVKVLN--- 85 (656)
T ss_pred hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhc--cCCCCcHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHhh---
Confidence 34556889999999887666 99999999999986 4554 45666667766666 8888888888887766443
Q ss_pred hHHHHHHHHHHHh-cCCchH----HHHHHHhcCC------CChHHHHHHHHH---------HHhCCCHHHHHHHHhcCCC
Q 010496 118 VMVGTALLDMYAK-FGRMDL----ATVVFDAMRV------KSSFTWNAMIDG---------YMRRGDIESAVRMFDEMPV 177 (509)
Q Consensus 118 ~~~~~~l~~~~~~-~g~~~~----A~~~~~~~~~------~~~~~~~~l~~~---------~~~~~~~~~A~~~~~~~~~ 177 (509)
...|..-+.---+ .|+... ..+.|+-... .+...|+..+.- |....+++...+++.++..
T Consensus 86 lDLW~lYl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~ 165 (656)
T KOG1914|consen 86 LDLWKLYLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALV 165 (656)
T ss_pred HhHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhc
Confidence 3344443332211 233222 2222322221 133344444432 3344566667777766642
Q ss_pred C----------CHhHHHHHHHHH-------HHcCChHHHHHHHHHHHHc--C----------------------------
Q 010496 178 R----------DAISWTALLNGF-------VKRGYFEEALECFREMQIS--G---------------------------- 210 (509)
Q Consensus 178 ~----------~~~~~~~li~~~-------~~~~~~~~A~~~~~~m~~~--~---------------------------- 210 (509)
. |-..|..=|... -+...+..|.++++++... |
T Consensus 166 tPm~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~ 245 (656)
T KOG1914|consen 166 TPMHNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIK 245 (656)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHH
Confidence 1 111111111100 1112233333333333211 1
Q ss_pred -------------------------------CCCCHhHH-HH----HHHHHHccCC-------HHHHHHHHHHHHHcCCC
Q 010496 211 -------------------------------VEPDYVTI-IS----VLNACANVGT-------LGIGLWIHRYVLKQDFK 247 (509)
Q Consensus 211 -------------------------------~~p~~~~~-~~----l~~~~~~~~~-------~~~a~~~~~~~~~~~~~ 247 (509)
..|+.... .. .-+.+...|+ .+++..+++..+..-..
T Consensus 246 wEksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~ 325 (656)
T KOG1914|consen 246 WEKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK 325 (656)
T ss_pred HHhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 11111000 00 0011111222 23444444444433222
Q ss_pred CcHhHHHHHHHHHHhcC---CHHHHHHHHHhccC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHH
Q 010496 248 DNVKVCNTLIDLYSRCG---CIEFARQVFQRMHK----RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKP-DGVSF 319 (509)
Q Consensus 248 ~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~ 319 (509)
.+..+|..+...--..- +.+.....++++.. .-..+|-..++.-.+....+.|..+|.+..+.+..+ +....
T Consensus 326 ~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa 405 (656)
T KOG1914|consen 326 ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVA 405 (656)
T ss_pred HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHH
Confidence 23333333332221111 24444444444432 233567777887788888888999999988887777 56677
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC---CCCCC--HHHHHHHHHHH
Q 010496 320 TGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM---PMKPN--EVVLGSLLAAC 394 (509)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~ 394 (509)
.+++.-+|. ++...|.++|+.-.+.+|- +..--...++-+...++-..+..+|++. .+.|+ ...|..++.--
T Consensus 406 ~A~mEy~cs-kD~~~AfrIFeLGLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yE 482 (656)
T KOG1914|consen 406 AALMEYYCS-KDKETAFRIFELGLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYE 482 (656)
T ss_pred HHHHHHHhc-CChhHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHH
Confidence 777776664 7888888998887764443 3333456677778888888888888887 23443 45888888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC--C--CchHHHHHHHHHHcCCchHH
Q 010496 395 RTKGDIILAERLMKYLVDLDPG--V--DSNYVLLANMYAAVGKWDGA 437 (509)
Q Consensus 395 ~~~g~~~~a~~~~~~~~~~~~~--~--~~~~~~l~~~~~~~g~~~~A 437 (509)
..-|+...+.++-++....-|. . ...-..++.-|.-.+.+..-
T Consensus 483 S~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~ 529 (656)
T KOG1914|consen 483 SNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCS 529 (656)
T ss_pred HhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhccccccc
Confidence 8889998888888887776652 1 12344455556555554433
No 136
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.32 E-value=2.4e-05 Score=73.09 Aligned_cols=124 Identities=12% Similarity=0.083 Sum_probs=85.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCH
Q 010496 152 WNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTL 231 (509)
Q Consensus 152 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~ 231 (509)
...++..+...++++.|.++|+++.+.++.....+++.+...++-.+|.+++++..+.. +-+...+......+.+.+++
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 34455556666777777777777777666666667777777777777777777777542 33555555556667777777
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 010496 232 GIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH 277 (509)
Q Consensus 232 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 277 (509)
+.|+++.+++.+.. |.+..+|..|..+|...|+++.|+..+..+.
T Consensus 251 ~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 251 ELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 77777777777764 5556677777777777777777777777665
No 137
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.31 E-value=1.2e-06 Score=51.00 Aligned_cols=35 Identities=31% Similarity=0.581 Sum_probs=33.0
Q ss_pred cchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCc
Q 010496 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNH 80 (509)
Q Consensus 46 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 80 (509)
.+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999984
No 138
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=98.30 E-value=0.003 Score=58.34 Aligned_cols=376 Identities=12% Similarity=0.077 Sum_probs=200.6
Q ss_pred HHcCCChhHHHHHHHHHhhCCCCCCccc------HHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Q 010496 55 HCRSGRIAEAALEFTRMTLHGTNPNHIT------FITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMY 128 (509)
Q Consensus 55 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~------~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 128 (509)
+-+++++.+|..+|.+..+. +..+... -+.++.++.. .+.+..........+.. |..+..---..-.+
T Consensus 16 Lqkq~~~~esEkifskI~~e-~~~~~f~lkeEvl~grilnAffl---~nld~Me~~l~~l~~~~--~~s~~l~LF~~L~~ 89 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDE-KESSPFLLKEEVLGGRILNAFFL---NNLDLMEKQLMELRQQF--GKSAYLPLFKALVA 89 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHH-hhcchHHHHHHHHhhHHHHHHHH---hhHHHHHHHHHHHHHhc--CCchHHHHHHHHHH
Confidence 34678999999999998764 2323222 3345555544 55666555555555543 32233222223345
Q ss_pred HhcCCchHHHHHHHhcCCC-----------------Ch-HHHHHHHHHHHhCCCHHHHHHHHhcCCCC--------CHhH
Q 010496 129 AKFGRMDLATVVFDAMRVK-----------------SS-FTWNAMIDGYMRRGDIESAVRMFDEMPVR--------DAIS 182 (509)
Q Consensus 129 ~~~g~~~~A~~~~~~~~~~-----------------~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~ 182 (509)
.+.+++++|.+.+...... +. ..=+..+..+...|++.+++.+++++.+. +..+
T Consensus 90 Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 90 YKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 6789999999988766521 11 11234567788999999999999887532 7788
Q ss_pred HHHHHHHHHHc--------C-------ChHHHHHHHHHHHHc------CCCCCHhHHHHHHHHHHccC--CHHHHHHHHH
Q 010496 183 WTALLNGFVKR--------G-------YFEEALECFREMQIS------GVEPDYVTIISVLNACANVG--TLGIGLWIHR 239 (509)
Q Consensus 183 ~~~li~~~~~~--------~-------~~~~A~~~~~~m~~~------~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~ 239 (509)
|+.++-.+.+. . .++.+.-+..+|... .+.|.......++....-.. +..--.+++.
T Consensus 170 yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 170 YDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred HHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 88755444332 1 123333333333221 12344333444443332211 1222233333
Q ss_pred HHHHcCCCCcHh-HHHHHHHHHHhcCCHHHHHHHHHhcc--------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010496 240 YVLKQDFKDNVK-VCNTLIDLYSRCGCIEFARQVFQRMH--------KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKE 310 (509)
Q Consensus 240 ~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 310 (509)
.....-+.|+-. +...+..-+.. +.+++..+-+.+. +.=+.++..++....+.++...|.+.+.-+...
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l 327 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL 327 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Confidence 333333333322 22233333322 2233322222221 122334555555555555555555555444332
Q ss_pred CCCCCHH---------------------HH------------------------HHHHH---HHhccCC-HHHHHHHHHH
Q 010496 311 GFKPDGV---------------------SF------------------------TGALT---ACSHAGL-IEDGLRYFDI 341 (509)
Q Consensus 311 g~~p~~~---------------------~~------------------------~~li~---~~~~~~~-~~~a~~~~~~ 341 (509)
.|+.. .+ ..|+. -+-+.|. -++|..+++.
T Consensus 328 --dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~ 405 (549)
T PF07079_consen 328 --DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKL 405 (549)
T ss_pred --CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 11111 11 11111 1223343 6677777777
Q ss_pred hHHhcCCCC-CHHHHHHHHH----HHHhc---CCh---HHHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHH
Q 010496 342 MKKIYRVSP-RIEHYGCIVD----LYSRA---GRL---EDALNVVENMPMKP----NEVVLGSLLAA--CRTKGDIILAE 404 (509)
Q Consensus 342 ~~~~~~~~~-~~~~~~~li~----~~~~~---g~~---~~A~~~~~~~~~~p----~~~~~~~l~~~--~~~~g~~~~a~ 404 (509)
+.+ +.+ |..+-+.+.. .|... ..+ -+-..++++.++.| +...-|.|..+ +...|++.++.
T Consensus 406 il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 406 ILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 773 222 3333332221 22211 111 12233444555554 44566777665 56899999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010496 405 RLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTM 444 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 444 (509)
-.-..+.+..| ++.+|..++.++....++++|..++..+
T Consensus 483 ~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 483 LYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 99999999999 7789999999999999999999999865
No 139
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.29 E-value=1.3e-06 Score=50.48 Aligned_cols=34 Identities=18% Similarity=0.315 Sum_probs=32.2
Q ss_pred ccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCC
Q 010496 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNP 78 (509)
Q Consensus 45 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 78 (509)
+.+||.+|.+|++.|+++.|..+|+.|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 4689999999999999999999999999999987
No 140
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.27 E-value=0.00018 Score=72.94 Aligned_cols=229 Identities=12% Similarity=0.090 Sum_probs=152.4
Q ss_pred hHHHHHHHHHHHhcCCchHHH-HHHHhcCCCChHHHHHHHHHHHhCCC----HHHHHHHHhcCCCCCHhHHHHHHHHHHH
Q 010496 118 VMVGTALLDMYAKFGRMDLAT-VVFDAMRVKSSFTWNAMIDGYMRRGD----IESAVRMFDEMPVRDAISWTALLNGFVK 192 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~A~~~~~~~~~~~~~~~~~li~~~~~ 192 (509)
+.....+=.+...-|.-++|- +++.+.. .++....+... +.++.++.+... .++.++-.|.....+
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~La~i~~~ 98 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQAR--------QVLERHAAVHKPAAALPELLDYVRRYP-HTELFQVLVARALEA 98 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHH--------HHHHHhhhhcchHhhHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence 555555555566666666663 3333321 12222222222 223333333322 258888889999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 010496 193 RGYFEEALECFREMQISGVEPD-YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQ 271 (509)
Q Consensus 193 ~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 271 (509)
.|.+++|..+++...+. .|+ ......++.++.+.+++++|....++..... +-+......+..++.+.|++++|.+
T Consensus 99 ~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A~~ 175 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSEQADA 175 (694)
T ss_pred cCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHHHH
Confidence 99999999999999884 565 5566777888999999999999999999887 7778888889999999999999999
Q ss_pred HHHhccCCC---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh---
Q 010496 272 VFQRMHKRT---LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKI--- 345 (509)
Q Consensus 272 ~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~--- 345 (509)
+|+++..++ ..++..+..++...|+.++|...|++..+. ..|....|+..+. +...-..+++++.-+
T Consensus 176 ~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 248 (694)
T PRK15179 176 CFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV------DLNADLAALRRLGVEGDG 248 (694)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH------HHHHHHHHHHHcCccccc
Confidence 999988543 567888888888999999999999998875 3445555554442 333344555555411
Q ss_pred cCCCCCHHHHHHHHHHHHhc
Q 010496 346 YRVSPRIEHYGCIVDLYSRA 365 (509)
Q Consensus 346 ~~~~~~~~~~~~li~~~~~~ 365 (509)
.+.+..+......|..|.+.
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~ 268 (694)
T PRK15179 249 RDVPVSILVLEKMLQEIGRR 268 (694)
T ss_pred CCCceeeeeHHHHHHHHhhc
Confidence 12222334445555555443
No 141
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.25 E-value=6.3e-05 Score=70.35 Aligned_cols=127 Identities=18% Similarity=0.165 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 010496 252 VCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGL 331 (509)
Q Consensus 252 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~ 331 (509)
....|+..+...++++.|..+|+++.+.++.....++..+...++-.+|.+++++.+.. .+-+...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCC
Confidence 34556667777888999999999998888888888888888888889999999998875 23355556566667888999
Q ss_pred HHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 010496 332 IEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENMPMKP 382 (509)
Q Consensus 332 ~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 382 (509)
++.|..+.+++.+ ..| +..+|..|..+|...|++++|+-.++.++..+
T Consensus 250 ~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999999984 345 56789999999999999999999999885443
No 142
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=98.20 E-value=0.005 Score=56.78 Aligned_cols=130 Identities=12% Similarity=0.099 Sum_probs=90.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHH-HHHHHH
Q 010496 283 SWNSIIVGFAVNGFVGEALEYFNSMQKEG-FKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEH-YGCIVD 360 (509)
Q Consensus 283 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~li~ 360 (509)
+|...+....+....+.|..+|-+..+.| +.++...+++++..++ .|+...|..+|+.-.... ||... -+..+.
T Consensus 399 v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d~~~y~~kyl~ 474 (660)
T COG5107 399 VFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PDSTLYKEKYLL 474 (660)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CCchHHHHHHHH
Confidence 56666777777777888888888888877 5667777777777555 477778888887766322 33322 344556
Q ss_pred HHHhcCChHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 361 LYSRAGRLEDALNVVENM--PMKPN--EVVLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
-+.+.++-+.|..+|+.. ++..+ ...|..++.--..-|+...+..+-+++.+.-|.
T Consensus 475 fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQ 534 (660)
T COG5107 475 FLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQ 534 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCc
Confidence 667778888888888755 22223 457777887777788888888877777777665
No 143
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=0.00032 Score=59.46 Aligned_cols=163 Identities=12% Similarity=0.132 Sum_probs=128.2
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 010496 283 SWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGA-LTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDL 361 (509)
Q Consensus 283 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 361 (509)
.|..++-+....|+.+.|..+++++... + |.+.-...+ .--+-..|++++|+++++.+.+ .-+-|..++-.-+..
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~--ddpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE--DDPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc--cCcchhHHHHHHHHH
Confidence 3455566677789999999999998886 3 444322222 2224567999999999999995 224567777777777
Q ss_pred HHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC---CchH
Q 010496 362 YSRAGRLEDALNVVENM--PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVG---KWDG 436 (509)
Q Consensus 362 ~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~ 436 (509)
....|+.-+|++-+... .+..|...|..+...|...|++++|.-.+++++-..|.++..+..++..+.-.| +.+-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77888888888877665 466799999999999999999999999999999999999999999999877665 4667
Q ss_pred HHHHHHHHHhCCC
Q 010496 437 AGKIRRTMKGRGI 449 (509)
Q Consensus 437 A~~~~~~m~~~~~ 449 (509)
|.++|.+..+...
T Consensus 210 arkyy~~alkl~~ 222 (289)
T KOG3060|consen 210 ARKYYERALKLNP 222 (289)
T ss_pred HHHHHHHHHHhCh
Confidence 8899988877654
No 144
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.17 E-value=9.1e-05 Score=59.13 Aligned_cols=113 Identities=7% Similarity=0.041 Sum_probs=85.0
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CC
Q 010496 303 YFNSMQKEGFKPD-GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PM 380 (509)
Q Consensus 303 ~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 380 (509)
.|++.... .|+ ......+...+...|++++|...++.+.+ ..+.+...+..+...+.+.|++++|...++.. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555553 343 34455666777888999999999988874 22446777888888888889999999888876 44
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010496 381 KP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 381 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 419 (509)
.| +...+..+...+...|++++|...++++++..|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 45 4667777888889999999999999999998887654
No 145
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.14 E-value=0.00026 Score=57.21 Aligned_cols=123 Identities=11% Similarity=0.035 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc--HhHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPD---YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDN--VKVCNTL 256 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 256 (509)
.|..++..+ ..++...+...++.+.... +.+ ......+...+...|++++|...|+.+......+. ......|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3666777777777776652 222 12223344566677777777777777776552222 2234445
Q ss_pred HHHHHhcCCHHHHHHHHHhccCC--ChhhHHHHHHHHHhCCChHHHHHHHHH
Q 010496 257 IDLYSRCGCIEFARQVFQRMHKR--TLVSWNSIIVGFAVNGFVGEALEYFNS 306 (509)
Q Consensus 257 ~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~ 306 (509)
..++...|++++|+..++....+ ....+......+...|++++|...|++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66666777777777777665432 233455556666667777777666664
No 146
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.13 E-value=0.00013 Score=59.00 Aligned_cols=114 Identities=18% Similarity=0.117 Sum_probs=58.9
Q ss_pred cCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHH
Q 010496 329 AGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNE----VVLGSLLAACRTKGDIIL 402 (509)
Q Consensus 329 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~ 402 (509)
.++...+...++.+.+.++-.+ .......+...+...|++++|...|+.. ...|+. .....|...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 5555555555666554222111 1223333445555666666666666555 112222 133344555666666666
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 403 AERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 403 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
|+..++... ..+-.+..+...+.+|.+.|++++|...|++
T Consensus 104 Al~~L~~~~-~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 104 ALATLQQIP-DEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHhcc-CcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666665421 1122334556666666667777777666654
No 147
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=0.00026 Score=64.24 Aligned_cols=154 Identities=14% Similarity=0.030 Sum_probs=106.9
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCCHHHHHHHHHHhHHhcCCCCCHHHH-----------
Q 010496 289 VGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALT--ACSHAGLIEDGLRYFDIMKKIYRVSPRIEHY----------- 355 (509)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------- 355 (509)
.++...|++++|...--..++.. ++ ..+..+++ ++--.++.+.+...|++.. ...|+...-
T Consensus 177 ~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 177 ECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred hhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence 35566788888887777666642 11 12222333 2334677888888888777 334442221
Q ss_pred --HHHHHHHHhcCChHHHHHHHHhC-CC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 010496 356 --GCIVDLYSRAGRLEDALNVVENM-PM-----KPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANM 427 (509)
Q Consensus 356 --~~li~~~~~~g~~~~A~~~~~~~-~~-----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 427 (509)
..=..-..+.|++.+|.+.+.+. .+ +|+...|.....+..+.|+..+|+.-.+.+..+++.....|..-+.+
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c 330 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC 330 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 11122345778899999988776 43 44566777777788889999999999999999888877788888888
Q ss_pred HHHcCCchHHHHHHHHHHhCC
Q 010496 428 YAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~~ 448 (509)
+.-.++|++|.+-+++..+..
T Consensus 331 ~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 331 HLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999998877654
No 148
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.05 E-value=6.7e-05 Score=55.34 Aligned_cols=93 Identities=23% Similarity=0.248 Sum_probs=74.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 010496 355 YGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVG 432 (509)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 432 (509)
+..+...+...|++++|..++++. ...|+ ...+..+...+...|++++|.+.++...+..|.++..+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777788888888888775 44443 3567777778888889999999999998888887778888889999999
Q ss_pred CchHHHHHHHHHHhC
Q 010496 433 KWDGAGKIRRTMKGR 447 (509)
Q Consensus 433 ~~~~A~~~~~~m~~~ 447 (509)
++++|...+++..+.
T Consensus 83 ~~~~a~~~~~~~~~~ 97 (100)
T cd00189 83 KYEEALEAYEKALEL 97 (100)
T ss_pred hHHHHHHHHHHHHcc
Confidence 999999988887654
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.03 E-value=9e-05 Score=57.57 Aligned_cols=93 Identities=18% Similarity=0.127 Sum_probs=53.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHH
Q 010496 355 YGCIVDLYSRAGRLEDALNVVENM-PMKPN----EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV---DSNYVLLAN 426 (509)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~ 426 (509)
+..++..+.+.|++++|.+.++.+ ...|+ ...+..+..++...|++++|...++.+....|.+ +..+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 444555555666666666666554 22222 2344445566666666666666666666655553 334566666
Q ss_pred HHHHcCCchHHHHHHHHHHhC
Q 010496 427 MYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~ 447 (509)
++.+.|++++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666554
No 150
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.03 E-value=1e-05 Score=46.94 Aligned_cols=33 Identities=48% Similarity=0.870 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPD 214 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 214 (509)
+|++++.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 678888888888888888888888888887776
No 151
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.00 E-value=1.2e-05 Score=46.36 Aligned_cols=33 Identities=39% Similarity=0.593 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 010496 181 ISWTALLNGFVKRGYFEEALECFREMQISGVEP 213 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p 213 (509)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777766
No 152
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.99 E-value=2.1e-05 Score=54.22 Aligned_cols=65 Identities=20% Similarity=0.165 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC-CchHHHHHHHHHHhC
Q 010496 383 NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVG-KWDGAGKIRRTMKGR 447 (509)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~~ 447 (509)
+..+|..+...+...|++++|+..|+++++.+|.++.+|..++.+|.+.| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 46788889999999999999999999999999999999999999999999 799999999987653
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.99 E-value=0.00016 Score=67.97 Aligned_cols=99 Identities=12% Similarity=0.071 Sum_probs=59.7
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 010496 324 TACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDII 401 (509)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 401 (509)
..+...|+++.|+..|+++.+ ..+.+...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|+++
T Consensus 10 ~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 10 KEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 344556667777777766663 12234555666666666666666666666665 3444 3445666666666666666
Q ss_pred HHHHHHHHHHhcCCCCCchHHHH
Q 010496 402 LAERLMKYLVDLDPGVDSNYVLL 424 (509)
Q Consensus 402 ~a~~~~~~~~~~~~~~~~~~~~l 424 (509)
+|...|+++++.+|.++.....+
T Consensus 88 eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHH
Confidence 66666666666666665544443
No 154
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.97 E-value=0.00023 Score=55.24 Aligned_cols=105 Identities=19% Similarity=0.195 Sum_probs=67.3
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHH
Q 010496 318 SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN----EVVLGSLL 391 (509)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~ 391 (509)
++..+...+.+.|++++|...|+.+.+...-.+ ....+..+..++.+.|++++|...++.+ ...|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 344455566667777777777777764322111 1344555677777777777777777765 22333 34566667
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 010496 392 AACRTKGDIILAERLMKYLVDLDPGVDSNYV 422 (509)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 422 (509)
.++...|+.++|...++++++..|.++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7777888888888888888888777654433
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.96 E-value=5.8e-06 Score=59.61 Aligned_cols=55 Identities=25% Similarity=0.243 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 388 GSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
..+..++.+.|++++|..++++ .+.++.+......++.+|.+.|++++|++++++
T Consensus 29 ~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~ 83 (84)
T PF12895_consen 29 YNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEK 83 (84)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 3344455555555555555554 333333333333445555555555555555543
No 156
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.96 E-value=1.2e-05 Score=45.10 Aligned_cols=31 Identities=35% Similarity=0.521 Sum_probs=28.9
Q ss_pred cchHHHHHHHHcCCChhHHHHHHHHHhhCCC
Q 010496 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGT 76 (509)
Q Consensus 46 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 76 (509)
++||++|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4899999999999999999999999998874
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.95 E-value=6.3e-05 Score=65.39 Aligned_cols=97 Identities=22% Similarity=0.222 Sum_probs=73.6
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHH
Q 010496 325 ACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNE-VVLGSLLAACRTKGDII 401 (509)
Q Consensus 325 ~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~ 401 (509)
-+.+.+++.+|+..|.+++ .+.| |...|..-..+|.+.|.++.|++-.+.. .+.|.. .+|..|..+|...|+++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHH
Confidence 4667788888888888888 3344 5666777778888888888888777665 666653 48888888888888888
Q ss_pred HHHHHHHHHHhcCCCCCchHHHH
Q 010496 402 LAERLMKYLVDLDPGVDSNYVLL 424 (509)
Q Consensus 402 ~a~~~~~~~~~~~~~~~~~~~~l 424 (509)
+|++.|+++++++|.+......|
T Consensus 167 ~A~~aykKaLeldP~Ne~~K~nL 189 (304)
T KOG0553|consen 167 EAIEAYKKALELDPDNESYKSNL 189 (304)
T ss_pred HHHHHHHhhhccCCCcHHHHHHH
Confidence 88888888888888876443333
No 158
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.94 E-value=0.01 Score=59.50 Aligned_cols=104 Identities=13% Similarity=0.163 Sum_probs=50.6
Q ss_pred hCCCHHHHHHHHhcCCCCCH-hHHHHHHH--HHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHH
Q 010496 161 RRGDIESAVRMFDEMPVRDA-ISWTALLN--GFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWI 237 (509)
Q Consensus 161 ~~~~~~~A~~~~~~~~~~~~-~~~~~li~--~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 237 (509)
..+++.+|......+.++.+ ..|...+. ...+.|+.++|..+++.....+.. |..|...+-.+|...+..++|..+
T Consensus 21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHH
Confidence 34555555555554433211 11222222 234555566666555555443322 455555555555666666666666
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 010496 238 HRYVLKQDFKDNVKVCNTLIDLYSRCGCIE 267 (509)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 267 (509)
|+...+.. |+......+..+|.+.+.+.
T Consensus 100 Ye~~~~~~--P~eell~~lFmayvR~~~yk 127 (932)
T KOG2053|consen 100 YERANQKY--PSEELLYHLFMAYVREKSYK 127 (932)
T ss_pred HHHHHhhC--CcHHHHHHHHHHHHHHHHHH
Confidence 66555542 33444445555555555443
No 159
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.90 E-value=3.3e-05 Score=52.45 Aligned_cols=58 Identities=21% Similarity=0.185 Sum_probs=50.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 390 LLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+...+...|++++|.+.|+++++..|.++..+..++.++...|++++|..+|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4567888999999999999999999998889999999999999999999999988764
No 160
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.86 E-value=0.00024 Score=59.37 Aligned_cols=82 Identities=17% Similarity=0.131 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN----EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLAN 426 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 426 (509)
...+..+...+...|++++|...+++. ...|+ ...+..+...+.+.|++++|...++++++..|.+...+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 344566666666777777777777665 22222 3467777777888888888888888888888877777777788
Q ss_pred HHHHcCC
Q 010496 427 MYAAVGK 433 (509)
Q Consensus 427 ~~~~~g~ 433 (509)
+|...|+
T Consensus 115 ~~~~~g~ 121 (172)
T PRK02603 115 IYHKRGE 121 (172)
T ss_pred HHHHcCC
Confidence 8777666
No 161
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.85 E-value=0.00021 Score=62.23 Aligned_cols=100 Identities=19% Similarity=0.266 Sum_probs=82.4
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCC
Q 010496 289 VGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGR 367 (509)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~ 367 (509)
.-+.+.+++.+|+..|.+.++.. +-|.+-|..=..+|++.|.++.|++-.+... .+.|. ..+|..|..+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHccCc
Confidence 45678899999999999999962 3356667777889999999999999999888 44564 6789999999999999
Q ss_pred hHHHHHHHHhC-CCCCCHHHHHHHHH
Q 010496 368 LEDALNVVENM-PMKPNEVVLGSLLA 392 (509)
Q Consensus 368 ~~~A~~~~~~~-~~~p~~~~~~~l~~ 392 (509)
+++|++.|++. .+.|+-.+|-.=+.
T Consensus 165 ~~~A~~aykKaLeldP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 165 YEEAIEAYKKALELDPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHHHhhhccCCCcHHHHHHHH
Confidence 99999999886 78898776654443
No 162
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.81 E-value=0.00089 Score=55.90 Aligned_cols=92 Identities=16% Similarity=0.116 Sum_probs=63.0
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPD--YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTL 256 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 256 (509)
....+..+...+...|++++|...|++..+....+. ...+..+..++.+.|++++|...+.+.++.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 445566777777778888888888887776432221 3466677777788888888888888887764 4456666677
Q ss_pred HHHHHhcCCHHHHHH
Q 010496 257 IDLYSRCGCIEFARQ 271 (509)
Q Consensus 257 ~~~~~~~g~~~~a~~ 271 (509)
..++...|+...+..
T Consensus 113 g~~~~~~g~~~~a~~ 127 (172)
T PRK02603 113 AVIYHKRGEKAEEAG 127 (172)
T ss_pred HHHHHHcCChHhHhh
Confidence 777777776554443
No 163
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.80 E-value=0.027 Score=51.67 Aligned_cols=112 Identities=13% Similarity=0.171 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 010496 316 GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACR 395 (509)
Q Consensus 316 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~ 395 (509)
..+.+..+.-|...|+...|.++-++.. .|+...|..-+.+|+..++|++..++... +-.+..|..++.+|.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk-----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK-----VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACL 248 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHcC-----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHH
Confidence 3455666667778888888877755544 38888899999999999999998887654 234578888999999
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010496 396 TKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTM 444 (509)
Q Consensus 396 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 444 (509)
+.|+..+|..+..++ .+..-+..|.+.|++.+|.+.--+.
T Consensus 249 ~~~~~~eA~~yI~k~---------~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI---------PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HCCCHHHHHHHHHhC---------ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 999999999988872 2366778889999999988775443
No 164
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.80 E-value=8.2e-05 Score=53.57 Aligned_cols=47 Identities=13% Similarity=0.272 Sum_probs=20.2
Q ss_pred CChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHhccCCHHHHHHHHHH
Q 010496 295 GFVGEALEYFNSMQKEGFK-PDGVSFTGALTACSHAGLIEDGLRYFDI 341 (509)
Q Consensus 295 ~~~~~A~~~~~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~ 341 (509)
|+++.|+.+++++.+.... ++...+..+..++.+.|++++|+.++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~ 50 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK 50 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 4455555555555443211 1222233344445555555555555544
No 165
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.80 E-value=0.00038 Score=51.17 Aligned_cols=92 Identities=23% Similarity=0.196 Sum_probs=53.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 010496 183 WTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR 262 (509)
Q Consensus 183 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (509)
+..+...+...|++++|...+++..+.. +.+...+..+..++...++++.|.+.++...+.. +.+..++..+..++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 3445556666666666666666665542 2233445555556666666666666666666554 3344455555566666
Q ss_pred cCCHHHHHHHHHhc
Q 010496 263 CGCIEFARQVFQRM 276 (509)
Q Consensus 263 ~g~~~~a~~~~~~~ 276 (509)
.|+++.|...+...
T Consensus 81 ~~~~~~a~~~~~~~ 94 (100)
T cd00189 81 LGKYEEALEAYEKA 94 (100)
T ss_pred HHhHHHHHHHHHHH
Confidence 66666666655544
No 166
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.79 E-value=0.00054 Score=64.38 Aligned_cols=102 Identities=9% Similarity=0.046 Sum_probs=82.6
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC
Q 010496 287 IIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAG 366 (509)
Q Consensus 287 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 366 (509)
-...+...|++++|+..|+++++.. +-+...|..+..+|.+.|++++|+..++++.+. .+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 3456778899999999999999863 335677888888999999999999999999842 2336778899999999999
Q ss_pred ChHHHHHHHHhC-CCCCCHHHHHHHH
Q 010496 367 RLEDALNVVENM-PMKPNEVVLGSLL 391 (509)
Q Consensus 367 ~~~~A~~~~~~~-~~~p~~~~~~~l~ 391 (509)
++++|...|++. .+.|+......++
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999886 6677655544444
No 167
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.79 E-value=0.00077 Score=53.56 Aligned_cols=104 Identities=11% Similarity=0.114 Sum_probs=59.1
Q ss_pred HHhcCC-CCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 010496 171 MFDEMP-VRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDN 249 (509)
Q Consensus 171 ~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 249 (509)
.+..+. +.+......+...+...|++++|..+|+.+.... +-+..-|-.|..++...|++++|+..|......+ +-+
T Consensus 25 ~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~dd 102 (157)
T PRK15363 25 MLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDA 102 (157)
T ss_pred HHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCC
Confidence 333443 3344444555555666666666666666665532 2234444555555666666666666666666655 455
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010496 250 VKVCNTLIDLYSRCGCIEFARQVFQRM 276 (509)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (509)
...+..+..++...|+.+.|.+.|+..
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555666666666666666666665544
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.76 E-value=0.00038 Score=57.89 Aligned_cols=95 Identities=12% Similarity=-0.009 Sum_probs=74.1
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 010496 351 RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN----EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLA 425 (509)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 425 (509)
....|..+...+...|++++|...+++. ...|+ ..++..+...+...|++++|...+++++...|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677777788888999998888876 33332 347888888999999999999999999999888777788888
Q ss_pred HHHH-------HcCCchHHHHHHHHHH
Q 010496 426 NMYA-------AVGKWDGAGKIRRTMK 445 (509)
Q Consensus 426 ~~~~-------~~g~~~~A~~~~~~m~ 445 (509)
..+. ..|++++|...+++..
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 8877 7888887766666543
No 169
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.74 E-value=0.025 Score=55.79 Aligned_cols=305 Identities=12% Similarity=0.089 Sum_probs=182.1
Q ss_pred HHHHHHHhcCCchHHHHHHHhcCCCC---hHHHHHHHHHHHhCC---CHHHHHHHHhcCCC--CCHhHHHHHHHHHHHcC
Q 010496 123 ALLDMYAKFGRMDLATVVFDAMRVKS---SFTWNAMIDGYMRRG---DIESAVRMFDEMPV--RDAISWTALLNGFVKRG 194 (509)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~ 194 (509)
.+++-+...+.+..|+++-..+..|. ..+|......+.+.. +.+-+..+-+++.. ....+|..+.+..-..|
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~G 521 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEG 521 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcC
Confidence 35666777888999999999888764 566777777776653 33334444445544 36677888888888999
Q ss_pred ChHHHHHHHHHHHHcCCC----CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc-----------CCCCcHhHHHHHHH-
Q 010496 195 YFEEALECFREMQISGVE----PDYVTIISVLNACANVGTLGIGLWIHRYVLKQ-----------DFKDNVKVCNTLID- 258 (509)
Q Consensus 195 ~~~~A~~~~~~m~~~~~~----p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~l~~- 258 (509)
+++-|..+++.=...+.. .+..-+...+.-+...|+.+....++..+... ..|.....|..+++
T Consensus 522 R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~ 601 (829)
T KOG2280|consen 522 RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRH 601 (829)
T ss_pred cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHh
Confidence 999998887653222100 11223445566677778877766666555432 11222223322222
Q ss_pred -------HHHhcCCHHHHHHHHHhcc-------CCChhhHHHHHHHHHhCCCh---HHH-------HHHHHHHHH-CCCC
Q 010496 259 -------LYSRCGCIEFARQVFQRMH-------KRTLVSWNSIIVGFAVNGFV---GEA-------LEYFNSMQK-EGFK 313 (509)
Q Consensus 259 -------~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~---~~A-------~~~~~~m~~-~g~~ 313 (509)
.+.+.++...+...|..-. ..-.........++.+.... ++| +.+.+.+.. .|..
T Consensus 602 ~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~ 681 (829)
T KOG2280|consen 602 QDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGS 681 (829)
T ss_pred hchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 0011111111211111100 01111222233344433321 111 111111211 2333
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHH
Q 010496 314 PDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAA 393 (509)
Q Consensus 314 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~ 393 (509)
-...+.+--+.-+...|+..+|.++-.+.+ -|+...|..-+.+++..+++++-+++-+..+ .+..|.-++.+
T Consensus 682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~ 753 (829)
T KOG2280|consen 682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEA 753 (829)
T ss_pred cccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHH
Confidence 444566666667778889999888777666 4888888888899999999999888887775 25667778889
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 394 CRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 394 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
|.+.|+.++|.+++.+... +.-...+|.+.|++.+|.++--+
T Consensus 754 c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 754 CLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 9999999999998876532 12677888888888888876533
No 170
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.73 E-value=0.036 Score=50.89 Aligned_cols=284 Identities=14% Similarity=0.140 Sum_probs=147.4
Q ss_pred cchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHH
Q 010496 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALL 125 (509)
Q Consensus 46 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 125 (509)
++|..+...-...|+..-|..+++. .|...-=.-++ ... ++.+.| +....+.| +| ..+|..|+
T Consensus 1 IS~a~IA~~A~~~GR~~LA~~LL~~------Ep~~~~qVplL---L~m--~e~e~A---L~kAi~Sg-D~--DLi~~vLl 63 (319)
T PF04840_consen 1 ISYAEIARKAYEEGRPKLATKLLEL------EPRASKQVPLL---LKM--GEDELA---LNKAIESG-DT--DLIYLVLL 63 (319)
T ss_pred CCHHHHHHHHHHcChHHHHHHHHHc------CCChHHHHHHH---hcC--CchHHH---HHHHHHcC-Cc--cHHHHHHH
Confidence 3577788888889999988887654 44443322222 222 444443 44555555 22 34555555
Q ss_pred HHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHH
Q 010496 126 DMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFRE 205 (509)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~ 205 (509)
..--+.. .. +++ .+....+.. ..+...|++..+.+.-.++|..-..........+-.++.. .+.+.-...+..
T Consensus 64 ~L~~~l~-~s---~f~-~il~~~p~a-~~l~~~~~r~~~~~~L~~~y~q~d~~~~~a~~~l~~~~~~-~~~~~~~~~L~~ 136 (319)
T PF04840_consen 64 HLKRKLS-LS---QFF-KILNQNPVA-SNLYKKYCREQDRELLKDFYYQEDRFQELANLHLQEALSQ-KDVEEKISFLKQ 136 (319)
T ss_pred HHHHhCC-HH---HHH-HHHHhCcch-HHHHHHHHHhccHHHHHHHHHhcchHHHHHHHHHHHHHhC-CChHHHHHHHHH
Confidence 5433322 11 122 221111212 2344556676677776666654333222222222223222 333333333333
Q ss_pred HHHc-CCCCCHhHHHHHHHHHHccCCHHHHHHHHHH---HHH-cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCC
Q 010496 206 MQIS-GVEPDYVTIISVLNACANVGTLGIGLWIHRY---VLK-QDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRT 280 (509)
Q Consensus 206 m~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~---~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 280 (509)
..+. +-..+......++ ++-.++++. +.+ .+......+.+.-+.-+...|+...|.++-.+..-|+
T Consensus 137 a~~~y~~~k~~~f~~~~~---------e~q~~Ll~~Q~~Le~~~~~~f~~~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~d 207 (319)
T PF04840_consen 137 AQKLYSKSKNDAFEAKLI---------EEQIKLLEYQKELEEKYNTNFVGLSLNDTIRKLIEMGQEKQAEKLKKEFKVPD 207 (319)
T ss_pred HHHHHHhcchhHHHHHHH---------HHHHHHHHHHHHHHHHhccchhcCCHHHHHHHHHHCCCHHHHHHHHHHcCCcH
Confidence 3221 0001111111111 111112111 110 1111122334444566667788888888888887788
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 010496 281 LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVD 360 (509)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 360 (509)
..-|...+.+++..++|++-.++-.. +-++.-|..++.+|.+.|+..+|..++.++. +..-+.
T Consensus 208 krfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA~~yI~k~~-----------~~~rv~ 270 (319)
T PF04840_consen 208 KRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEASKYIPKIP-----------DEERVE 270 (319)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHHHHHHHhCC-----------hHHHHH
Confidence 88888888888888888776665332 1133667777888888888888877776633 233566
Q ss_pred HHHhcCChHHHHHHHHhCC
Q 010496 361 LYSRAGRLEDALNVVENMP 379 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~~ 379 (509)
.|.++|++.+|.+.--+.+
T Consensus 271 ~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 271 MYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HHHHCCCHHHHHHHHHHcC
Confidence 7788888888776655543
No 171
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.72 E-value=0.00042 Score=62.81 Aligned_cols=130 Identities=10% Similarity=0.006 Sum_probs=86.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhH---HhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-------CCC-CCH
Q 010496 317 VSFTGALTACSHAGLIEDGLRYFDIMK---KIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-------PMK-PNE 384 (509)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~~~---~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~-p~~ 384 (509)
..|..|...|.-.|+++.|+...+.-. +.+|-.. -...+..|..++.-.|+++.|.+.++.. +.+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 345566666666788888876655322 2333332 2456777888888888888888877654 211 234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----C--CCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVDL----D--PGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
....+|..+|.-..++++|+.++.+-+.+ + .....++.+|+.+|...|..++|+.+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56677788887778888888877765442 1 12345688888888888888888877766544
No 172
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.71 E-value=0.0027 Score=57.76 Aligned_cols=123 Identities=19% Similarity=0.262 Sum_probs=65.4
Q ss_pred HHHHHhcc-CCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhCC---C-----CCCHH-HH
Q 010496 322 ALTACSHA-GLIEDGLRYFDIMKKIYRVSPR----IEHYGCIVDLYSRAGRLEDALNVVENMP---M-----KPNEV-VL 387 (509)
Q Consensus 322 li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~---~-----~p~~~-~~ 387 (509)
+...|... |+++.|++.|++..+.+..... ..++..+...+.+.|++++|.++|++.. . +.+.. .+
T Consensus 120 lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~ 199 (282)
T PF14938_consen 120 LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYF 199 (282)
T ss_dssp HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHH
Confidence 33445555 6777777777766542211111 3345566677778888888888887651 1 11221 22
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCc---hHHHHHHHHHHc--CCchHHHHHHHHH
Q 010496 388 GSLLAACRTKGDIILAERLMKYLVDLDPG--VDS---NYVLLANMYAAV--GKWDGAGKIRRTM 444 (509)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~---~~~~l~~~~~~~--g~~~~A~~~~~~m 444 (509)
...+-++...|+...|.+.+++.....|. ++. ....|+.++-.. ..+++|+.-|+.+
T Consensus 200 l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 200 LKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence 33334566778888888888888877765 222 234444444332 2345555555443
No 173
>PRK15331 chaperone protein SicA; Provisional
Probab=97.71 E-value=0.002 Score=51.46 Aligned_cols=89 Identities=16% Similarity=0.039 Sum_probs=76.8
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCch
Q 010496 358 IVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWD 435 (509)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 435 (509)
...-+...|++++|..+|+-+ -..| +..-|..|..++-..+++++|...|..+...++++|..+...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 444556789999999999887 2333 56677888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 010496 436 GAGKIRRTMKG 446 (509)
Q Consensus 436 ~A~~~~~~m~~ 446 (509)
.|+..|+..++
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998877
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.71 E-value=0.0027 Score=62.43 Aligned_cols=61 Identities=25% Similarity=0.196 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
..|..+.-.+...|++++|...++++++++| +...|..++.++...|+.++|.+.+++...
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~ 481 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFN 481 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4444444444445555555555555555555 234455555555555555555555555544
No 175
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.70 E-value=0.00041 Score=57.73 Aligned_cols=94 Identities=9% Similarity=0.086 Sum_probs=80.0
Q ss_pred CCCCCCccchHHHHHHHHcC-----CChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCC--------------ccchh
Q 010496 39 KSTVNPTVQWTSSISRHCRS-----GRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFP--------------SQCLF 99 (509)
Q Consensus 39 ~~~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--------------~~~~~ 99 (509)
.+...|..+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.||..+=+.. ....+
T Consensus 41 ~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~ 120 (228)
T PF06239_consen 41 PGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQE 120 (228)
T ss_pred hhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHH
Confidence 46788999999999999754 778888889999999999999999999999875432 35667
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC
Q 010496 100 LGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGR 133 (509)
Q Consensus 100 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 133 (509)
-+..++++|...|+-|+ .+++..|++.+++.+.
T Consensus 121 c~i~lL~qME~~gV~Pd-~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 121 CAIDLLEQMENNGVMPD-KETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHcCCCCc-HHHHHHHHHHhccccH
Confidence 88999999999999998 9999999998876654
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.68 E-value=5.6e-05 Score=51.89 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=46.0
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 395 RTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 395 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
...|++++|.++|+++.+..|.+..++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999998889999999999999999999999887665
No 177
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.65 E-value=0.0024 Score=48.92 Aligned_cols=106 Identities=19% Similarity=0.128 Sum_probs=67.3
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---cHhHHHHHHHH
Q 010496 185 ALLNGFVKRGYFEEALECFREMQISGVEPD--YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKD---NVKVCNTLIDL 259 (509)
Q Consensus 185 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~ 259 (509)
.+..++-..|+.++|+.+|++....|.... ...+..+...+...|++++|..++++..... |. +......+..+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHH
Confidence 355667777888888888888887775543 3345556677778888888888888777652 22 23333334456
Q ss_pred HHhcCCHHHHHHHHHhccCCChhhHHHHHHHH
Q 010496 260 YSRCGCIEFARQVFQRMHKRTLVSWNSIIVGF 291 (509)
Q Consensus 260 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 291 (509)
+...|+.++|++.+-...-++...|..-|..|
T Consensus 85 L~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777776655544444444444444
No 178
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.65 E-value=0.0081 Score=54.67 Aligned_cols=158 Identities=15% Similarity=0.081 Sum_probs=68.8
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCC---CCC--HhHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCc--HhH
Q 010496 184 TALLNGFVKRGYFEEALECFREMQISGV---EPD--YVTIISVLNACANVGTLGIGLWIHRYVLKQ----DFKDN--VKV 252 (509)
Q Consensus 184 ~~li~~~~~~~~~~~A~~~~~~m~~~~~---~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~ 252 (509)
......|...|++++|.+.|.+...... .+. ...|.....++. ..++++|...+++..+. | .++ ..+
T Consensus 39 ~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~ 116 (282)
T PF14938_consen 39 EKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIECYEKAIEIYREAG-RFSQAAKC 116 (282)
T ss_dssp HHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHCT--HHHHHHH
T ss_pred HHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHHHHHHHHHHHhcC-cHHHHHHH
Confidence 3455666667777777777666532110 111 112333333333 33666666666554431 2 111 223
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-----CCHH
Q 010496 253 CNTLIDLYSRC-GCIEFARQVFQRMHK-----RT----LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFK-----PDGV 317 (509)
Q Consensus 253 ~~~l~~~~~~~-g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-----p~~~ 317 (509)
+..+...|... |+++.|++.|++..+ .. ..++..+...+.+.|++++|.++|+++...... .+..
T Consensus 117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~ 196 (282)
T PF14938_consen 117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAK 196 (282)
T ss_dssp HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHH
Confidence 44455555555 566666655555431 11 123444455555556666666666555443211 1111
Q ss_pred -HHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 318 -SFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 318 -~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
.|...+-++...|+.-.|...+++..
T Consensus 197 ~~~l~a~l~~L~~~D~v~A~~~~~~~~ 223 (282)
T PF14938_consen 197 EYFLKAILCHLAMGDYVAARKALERYC 223 (282)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11222223344455555555555554
No 179
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.64 E-value=0.032 Score=51.21 Aligned_cols=85 Identities=12% Similarity=0.077 Sum_probs=43.4
Q ss_pred HHhCCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcC
Q 010496 291 FAVNGFVGEALEYFNSMQKE---GFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAG 366 (509)
Q Consensus 291 ~~~~~~~~~A~~~~~~m~~~---g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g 366 (509)
..+.|++..|.+.|.+.+.. .+.|+...|.....+..+.|+.++|+.-.+... .+.+. +..|..-..++...+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al---~iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL---KIDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh---hcCHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666542 233344445555555556666666666666555 22222 222222333444455
Q ss_pred ChHHHHHHHHhC
Q 010496 367 RLEDALNVVENM 378 (509)
Q Consensus 367 ~~~~A~~~~~~~ 378 (509)
++++|.+-++..
T Consensus 336 ~~e~AV~d~~~a 347 (486)
T KOG0550|consen 336 KWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHH
Confidence 666666666553
No 180
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.62 E-value=0.041 Score=48.59 Aligned_cols=65 Identities=9% Similarity=0.065 Sum_probs=44.1
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHh-HH---HHHHHHHHccCCHHHHHHHHHHHHHcC
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYV-TI---ISVLNACANVGTLGIGLWIHRYVLKQD 245 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~-~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~ 245 (509)
++..+......+...|++++|.+.|+.+... .|+.. .. -.++.++.+.++++.|...+++.++..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 4444545666667788888888888888774 34322 21 345566778888888888888887764
No 181
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.62 E-value=0.0023 Score=53.23 Aligned_cols=81 Identities=14% Similarity=0.067 Sum_probs=50.9
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC--CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 010496 180 AISWTALLNGFVKRGYFEEALECFREMQISGVEP--DYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLI 257 (509)
Q Consensus 180 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 257 (509)
...|..+...+...|++++|+..|++.......+ ...++..+..++...|++++|...+++..... +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 3455666667777777777777777776542222 12356666677777777777777777777653 34445555555
Q ss_pred HHHH
Q 010496 258 DLYS 261 (509)
Q Consensus 258 ~~~~ 261 (509)
.++.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 5555
No 182
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.62 E-value=8.9e-05 Score=41.50 Aligned_cols=29 Identities=41% Similarity=0.746 Sum_probs=20.6
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 010496 283 SWNSIIVGFAVNGFVGEALEYFNSMQKEG 311 (509)
Q Consensus 283 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 311 (509)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776665
No 183
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.62 E-value=0.00024 Score=49.48 Aligned_cols=58 Identities=14% Similarity=0.101 Sum_probs=51.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 391 LAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
...|.+.+++++|.+++++++..+|.++..+...+.++.+.|++++|.+.+++..+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 3567889999999999999999999999999999999999999999999999988654
No 184
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.61 E-value=0.0026 Score=57.60 Aligned_cols=133 Identities=12% Similarity=0.102 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 010496 282 VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTA-CSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVD 360 (509)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 360 (509)
.+|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 357777777778888888888888887542 2233344433333 33356777799999998864 4456777888888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010496 361 LYSRAGRLEDALNVVENM-PMKPNE----VVLGSLLAACRTKGDIILAERLMKYLVDLDPGV 417 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 417 (509)
.+.+.++.+.|..+|++. ..-|.. ..|...+..-.+.|+.+.+.++.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 888999999999999886 323333 488888888889999999999999998887763
No 185
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.59 E-value=0.013 Score=51.75 Aligned_cols=175 Identities=11% Similarity=0.082 Sum_probs=99.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCCh---hh---HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010496 255 TLIDLYSRCGCIEFARQVFQRMHKRTL---VS---WNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSH 328 (509)
Q Consensus 255 ~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~---~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 328 (509)
.....+...|++++|.+.|+.+....+ .. .-.++.++.+.+++++|...+++.++....-....+...+.+.+.
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~ 116 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN 116 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence 344455566777777777777653211 11 233455667777777777777777764222112222222222221
Q ss_pred --cC---------------C---HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH
Q 010496 329 --AG---------------L---IEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLG 388 (509)
Q Consensus 329 --~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~ 388 (509)
.+ + ...|...|+.+.+. |=...-..+|...+..+..+--..- .
T Consensus 117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~----------------yP~S~ya~~A~~rl~~l~~~la~~e-~ 179 (243)
T PRK10866 117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG----------------YPNSQYTTDATKRLVFLKDRLAKYE-L 179 (243)
T ss_pred hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH----------------CcCChhHHHHHHHHHHHHHHHHHHH-H
Confidence 10 1 12344444444432 2222223333333333311101111 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 389 SLLAACRTKGDIILAERLMKYLVDLDPGVD---SNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.+..-|.+.|.+..|..-++.+++.-|..+ .+...++.+|...|..++|..+...+..
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~ 240 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA 240 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence 345668899999999999999999888744 4678888999999999999998876643
No 186
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.0055 Score=53.97 Aligned_cols=101 Identities=22% Similarity=0.158 Sum_probs=83.6
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCCchHHH
Q 010496 349 SPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTK---GDIILAERLMKYLVDLDPGVDSNYVL 423 (509)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~ 423 (509)
+-|...|..|...|...|++..|..-|.+. ++.| +...+..+..++..+ ....++..++++++..+|.+..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 447888999999999999999999999886 4444 555666666665433 35778899999999999999999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCCC
Q 010496 424 LANMYAAVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 424 l~~~~~~~g~~~~A~~~~~~m~~~~~ 449 (509)
|+..+...|++.+|...|+.|.+..-
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp 258 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLP 258 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCC
Confidence 99999999999999999999988753
No 187
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.58 E-value=0.001 Score=62.72 Aligned_cols=116 Identities=14% Similarity=0.151 Sum_probs=95.2
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 010496 148 SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR------DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISV 221 (509)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 221 (509)
+......+++.+....+++.+.+++...... -+.+.+++++.|.+.|..+++++++..=...|+-||..+++.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 5556666777777777888888888766532 2446679999999999999999999999999999999999999
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc
Q 010496 222 LNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRC 263 (509)
Q Consensus 222 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 263 (509)
+..+.+.|++..|.++...|...+...+..++...+.+|.+-
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999988877666777776666666554
No 188
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.55 E-value=0.0014 Score=61.74 Aligned_cols=97 Identities=12% Similarity=0.108 Sum_probs=60.0
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010496 247 KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR------TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFT 320 (509)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 320 (509)
+.+......+++.+....+.+.+..++.+.... ...|..+++..|...|..+.++.+++.=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 444555555555555555566666665555421 22344566666666666666666666666666677777777
Q ss_pred HHHHHHhccCCHHHHHHHHHHhH
Q 010496 321 GALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 321 ~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
.|++.+.+.|++..|.++...|.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~ 165 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMM 165 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHH
Confidence 77777777777766666666665
No 189
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.55 E-value=0.0075 Score=59.41 Aligned_cols=129 Identities=9% Similarity=-0.069 Sum_probs=65.6
Q ss_pred CCCHhHHHHHHHHHHc--c---CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC--------CHHHHHHHHHhcc-
Q 010496 212 EPDYVTIISVLNACAN--V---GTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG--------CIEFARQVFQRMH- 277 (509)
Q Consensus 212 ~p~~~~~~~l~~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~- 277 (509)
+.+...|...+++... . ++...|..+|+++++.. |-....+..+..+|.... ++..+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4556667666666432 2 22567777777777765 444555555544443221 1222222222211
Q ss_pred ----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 278 ----KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 278 ----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
..+...|.++.......|++++|...++++... .|+...|..+...+...|+.++|...+++..
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 113344444444444455555555555555554 2455555555555555555555555555555
No 190
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.55 E-value=0.0018 Score=47.76 Aligned_cols=81 Identities=15% Similarity=0.162 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHccC--------CHHHHHHHHHHHHHcCCCCcHhH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGV-EPDYVTIISVLNACANVG--------TLGIGLWIHRYVLKQDFKDNVKV 252 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 252 (509)
+-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|+..++.|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 334566667777999999999999999999 899999999998876543 24467788999999999999999
Q ss_pred HHHHHHHHHh
Q 010496 253 CNTLIDLYSR 262 (509)
Q Consensus 253 ~~~l~~~~~~ 262 (509)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999987765
No 191
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.50 E-value=0.00047 Score=46.68 Aligned_cols=61 Identities=16% Similarity=0.172 Sum_probs=46.2
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010496 358 IVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD 418 (509)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 418 (509)
+...+.+.|++++|.+.|+++ ...|+ ...+..+..++...|++++|...|+++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456677888888888888886 55564 55777888888888888888888888888888753
No 192
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.49 E-value=0.016 Score=46.94 Aligned_cols=133 Identities=12% Similarity=0.064 Sum_probs=99.3
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHH
Q 010496 312 FKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN---EVVL 387 (509)
Q Consensus 312 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~ 387 (509)
..|+...-..|..+....|+..+|...|++.. ..-+.-|......+.++....+++..|...++.+ ...|. +.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 35677777778888889999999999999888 4444557777888888888899999998888876 33332 2344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 388 GSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
..+..++...|++.+|...|+.++...|.. ..-......+.++|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 456778888999999999999999887763 4555667778888887776665555444
No 193
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.40 E-value=0.0071 Score=54.82 Aligned_cols=127 Identities=14% Similarity=0.114 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH-HHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA-CANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLY 260 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (509)
+|..+++...+.+..+.|..+|.+.++.+ ..+...|...+.. +...++.+.|..+|+..++. ++.+...+...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 55666666666666777777777766432 2233444444443 23345555577777766665 355666666666666
Q ss_pred HhcCCHHHHHHHHHhccCC------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010496 261 SRCGCIEFARQVFQRMHKR------TLVSWNSIIVGFAVNGFVGEALEYFNSMQKE 310 (509)
Q Consensus 261 ~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 310 (509)
...|+.+.|..+|++.... -...|..++..-.+.|+.+.+.++.+++.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6777777777777666532 2235666666666666666666666666553
No 194
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.39 E-value=0.003 Score=46.58 Aligned_cols=79 Identities=13% Similarity=0.159 Sum_probs=59.2
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------CHHHHHHHHHHhHHhcCCCCCHHHH
Q 010496 285 NSIIVGFAVNGFVGEALEYFNSMQKEGF-KPDGVSFTGALTACSHAG--------LIEDGLRYFDIMKKIYRVSPRIEHY 355 (509)
Q Consensus 285 ~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~~~~~li~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 355 (509)
...|..+...+++...-.+|+.+.+.|+ .|+..+|+.++.+..+.. ++-....+|+.|. ..+++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL-~~~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDIL-SNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHH-HhccCCcHHHH
Confidence 3345556666888888888988888888 888889998888776542 2345667778887 56788888888
Q ss_pred HHHHHHHHh
Q 010496 356 GCIVDLYSR 364 (509)
Q Consensus 356 ~~li~~~~~ 364 (509)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 888877654
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.38 E-value=0.0019 Score=57.46 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=56.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHH
Q 010496 355 YGCIVDLYSRAGRLEDALNVVENM-PMKPNE----VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD---SNYVLLAN 426 (509)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~ 426 (509)
|...+..+.+.|++++|...|+.+ ...|+. ..+..+...|...|++++|...|+.+++..|+++ .++..++.
T Consensus 146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 444444445556666666666665 333332 3455566667777777777777777776666533 34555566
Q ss_pred HHHHcCCchHHHHHHHHHHhC
Q 010496 427 MYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~ 447 (509)
++...|++++|.++|+++++.
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 677777777777777776654
No 196
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.34 E-value=0.059 Score=43.82 Aligned_cols=124 Identities=14% Similarity=0.049 Sum_probs=70.0
Q ss_pred CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CChhhHHH
Q 010496 212 EPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK-----RTLVSWNS 286 (509)
Q Consensus 212 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 286 (509)
.|+...-..|..++...|+..+|...|++...--+-.|......+.++....+++..|...++++-+ +.+.+...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 4555555566666666666666666666666554455666666666666666666666666666543 13334445
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010496 287 IIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLR 337 (509)
Q Consensus 287 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 337 (509)
+...+...|++.+|+..|+..... -|+...-......+.+.|+.+++..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~a 214 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANA 214 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHH
Confidence 555666666666666666666654 3333322222223445555444433
No 197
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.34 E-value=0.015 Score=49.86 Aligned_cols=127 Identities=13% Similarity=0.070 Sum_probs=60.5
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc-----HhHHHHHHH
Q 010496 184 TALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDN-----VKVCNTLID 258 (509)
Q Consensus 184 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~ 258 (509)
+.++..+...|.+.-...++++.++...+.++.....|++...+.||.+.|..+|+...+..-..+ ..+......
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~ 260 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF 260 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence 344444445555555555555555544333444455555555555666666555555444321222 222222233
Q ss_pred HHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010496 259 LYSRCGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNSMQKE 310 (509)
Q Consensus 259 ~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 310 (509)
.|.-.+++..|...|.++... ++..-|.-.-+..-.|+..+|++.++.|...
T Consensus 261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344445555555555554432 3333344333444455555555555555553
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.28 E-value=0.00084 Score=46.09 Aligned_cols=64 Identities=25% Similarity=0.295 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKG-DIILAERLMKYLVDLDP 415 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 415 (509)
...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 456777777788888888888888775 4455 3557777788888888 68888888888887766
No 199
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.28 E-value=0.067 Score=49.65 Aligned_cols=161 Identities=12% Similarity=0.065 Sum_probs=96.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccCC-------ChhhHHHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010496 254 NTLIDLYSRCGCIEFARQVFQRMHKR-------TLVSWNSIIVGFAV---NGFVGEALEYFNSMQKEGFKPDGVSFTGAL 323 (509)
Q Consensus 254 ~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 323 (509)
..++-+|....+++...++.+.+... ....-....-++.+ .|+.++|++++..++.....+++.+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34445566777777777777766643 12222233445555 778888888888766655667777777776
Q ss_pred HHHhc---------cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC-hH---HHHHHH---Hh-C------CC
Q 010496 324 TACSH---------AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGR-LE---DALNVV---EN-M------PM 380 (509)
Q Consensus 324 ~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~---~A~~~~---~~-~------~~ 380 (509)
+.|-. ....++|+..|.+.- .+.|+...=-.++..+...|. .+ +..++- .. . .-
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 65431 123677777777665 333543322222223333332 11 222222 11 1 12
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010496 381 KPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV 417 (509)
Q Consensus 381 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 417 (509)
..+-..+.+++.++.-.|++++|.+.++++.+..|..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 3467788899999999999999999999999886553
No 200
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=97.28 E-value=0.028 Score=54.46 Aligned_cols=72 Identities=10% Similarity=0.035 Sum_probs=37.6
Q ss_pred cCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 010496 263 CGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIM 342 (509)
Q Consensus 263 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 342 (509)
.|-.+.+.++-+++...+..+...+..-+.+...+.-|-++|.+|-.. ..+++.+...++|++|..+-++.
T Consensus 729 ~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 729 HGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred ccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhC
Confidence 333344444444444444444444444445555566666666655431 23455566667777766665554
Q ss_pred H
Q 010496 343 K 343 (509)
Q Consensus 343 ~ 343 (509)
.
T Consensus 800 P 800 (1081)
T KOG1538|consen 800 P 800 (1081)
T ss_pred c
Confidence 4
No 201
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.27 E-value=0.14 Score=46.76 Aligned_cols=287 Identities=17% Similarity=0.100 Sum_probs=143.5
Q ss_pred HHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHH--HHHhcCCchHHHHHHHhcCCCCh---HHHHHHHH
Q 010496 83 FITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLD--MYAKFGRMDLATVVFDAMRVKSS---FTWNAMID 157 (509)
Q Consensus 83 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~~~~---~~~~~l~~ 157 (509)
|..|=.++...+.|+-..++++-.+..+. +..| ......|+. .-.-.|+.+.|.+-|+.|..... .-...|.-
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~l-lssD-qepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyl 162 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKL-LSSD-QEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYL 162 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhcc-chHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHH
Confidence 33444443333336666666665554422 1122 222222332 33345777777777777764211 11222222
Q ss_pred HHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHhH--HHHHHHH--HH-cc
Q 010496 158 GYMRRGDIESAVRMFDEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISG-VEPDYVT--IISVLNA--CA-NV 228 (509)
Q Consensus 158 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~-~~p~~~~--~~~l~~~--~~-~~ 228 (509)
.--+.|+.+.|...-+..-.. -...+.+.+...+..|+|+.|+++++.-+... +.++..- -..|+.+ .. -.
T Consensus 163 eAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld 242 (531)
T COG3898 163 EAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD 242 (531)
T ss_pred HHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc
Confidence 233566666666665544322 34566677777777777777777777655432 2333221 1122221 11 12
Q ss_pred CCHHHHHHHHHHHHHcCCCCcH-hHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 010496 229 GTLGIGLWIHRYVLKQDFKDNV-KVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSM 307 (509)
Q Consensus 229 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 307 (509)
.+...|...-.+..+.. |+. ..-.....++.+.|+..++-.+++.+=+..+.---..+-.+.+.|+ .++.-+++.
T Consensus 243 adp~~Ar~~A~~a~KL~--pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gd--ta~dRlkRa 318 (531)
T COG3898 243 ADPASARDDALEANKLA--PDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGD--TALDRLKRA 318 (531)
T ss_pred CChHHHHHHHHHHhhcC--CccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCC--cHHHHHHHH
Confidence 24555555555555442 332 2223345666777777777777776653322221122222333443 233333322
Q ss_pred HH-CCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh-cCChHHHHHHHHhC
Q 010496 308 QK-EGFKPD-GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSR-AGRLEDALNVVENM 378 (509)
Q Consensus 308 ~~-~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~ 378 (509)
.+ ...+|| ..+...+..+-...|++..|..--+... ...|....|..|.+.-.. .|+-.++..++-+.
T Consensus 319 ~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 319 KKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 21 112333 3455556666667777777766555554 445666667666665443 37777777777654
No 202
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.25 E-value=0.0042 Score=51.93 Aligned_cols=97 Identities=14% Similarity=0.235 Sum_probs=72.9
Q ss_pred HHHHhcC--CCCCHhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc-------------
Q 010496 169 VRMFDEM--PVRDAISWTALLNGFVKR-----GYFEEALECFREMQISGVEPDYVTIISVLNACANV------------- 228 (509)
Q Consensus 169 ~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~------------- 228 (509)
.+.|+.. ...+..+|..+++.|.+. |..+=....+..|.+-|+.-|..+|+.|++++=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 344666777777776543 66777777788888888888899999988887542
Q ss_pred ---CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 010496 229 ---GTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGC 265 (509)
Q Consensus 229 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 265 (509)
.+-+-|.+++++|...|+-||..++..+++.+.+.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1236788999999999999999999999999977654
No 203
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.21 E-value=0.0087 Score=45.86 Aligned_cols=54 Identities=20% Similarity=0.073 Sum_probs=24.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHHcCCchHHHHHHH
Q 010496 389 SLLAACRTKGDIILAERLMKYLVDLDPG---VDSNYVLLANMYAAVGKWDGAGKIRR 442 (509)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~ 442 (509)
.+..++...|++++|..++++.....|+ +......++.++...|+.++|++.+-
T Consensus 43 ~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l 99 (120)
T PF12688_consen 43 QLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGRPKEALEWLL 99 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 3444444455555555555544444443 22233333444444455555544443
No 204
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.21 E-value=0.26 Score=48.54 Aligned_cols=70 Identities=13% Similarity=0.155 Sum_probs=52.2
Q ss_pred cCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC-----CHhHHHHHHHHHHHcCChHHHHHHHHH
Q 010496 131 FGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVR-----DAISWTALLNGFVKRGYFEEALECFRE 205 (509)
Q Consensus 131 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~A~~~~~~ 205 (509)
.|++++|.+++-.+..+|. .+..+.+.|++-...++++.-... -..+|+.+...+.....|++|.+.|..
T Consensus 747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5889999999988877664 456677888888888888764432 245777788888777778887777654
No 205
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.20 E-value=0.0014 Score=59.63 Aligned_cols=260 Identities=17% Similarity=0.107 Sum_probs=149.9
Q ss_pred chHHHHHH--HHcCCChhHHHHHHHHHhhCCCCCCccc----HHHHHHhhcCCCccchhHHHHHHHHHHHh----CCCCC
Q 010496 47 QWTSSISR--HCRSGRIAEAALEFTRMTLHGTNPNHIT----FITLLSGCADFPSQCLFLGAMIHGLVCKL----GLDRN 116 (509)
Q Consensus 47 ~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~ 116 (509)
++...+.+ +|+.|+...-+.+|+..++-|.. |..+ |+.|-.++.-. +++..|.+.+..=+.. |-...
T Consensus 17 CleLalEGERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL--~DY~kAl~yH~hDltlar~lgdklG 93 (639)
T KOG1130|consen 17 CLELALEGERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYL--KDYEKALKYHTHDLTLARLLGDKLG 93 (639)
T ss_pred HHHHHHHHHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhH--hhHHHHHhhhhhhHHHHHHhcchhc
Confidence 44444443 78999999999999999997733 4443 45555555566 7888888765432221 21111
Q ss_pred chHHHHHHHHHHHhcCCchHHHHHHHhcCC-------C--ChHHHHHHHHHHHhCCC--------------------HHH
Q 010496 117 NVMVGTALLDMYAKFGRMDLATVVFDAMRV-------K--SSFTWNAMIDGYMRRGD--------------------IES 167 (509)
Q Consensus 117 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~l~~~~~~~~~--------------------~~~ 167 (509)
-...-..|.+.+--.|.+++|+..-.+-.. + ....+..+...|...|+ ++.
T Consensus 94 EAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~ 173 (639)
T KOG1130|consen 94 EAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALEN 173 (639)
T ss_pred cccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHH
Confidence 122333456666667888888665443221 1 23345556666654432 233
Q ss_pred HHHHHhcCCCC---------CHhHHHHHHHHHHHcCChHHHHHHHHHH----HHcCCC-CCHhHHHHHHHHHHccCCHHH
Q 010496 168 AVRMFDEMPVR---------DAISWTALLNGFVKRGYFEEALECFREM----QISGVE-PDYVTIISVLNACANVGTLGI 233 (509)
Q Consensus 168 A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~A~~~~~~m----~~~~~~-p~~~~~~~l~~~~~~~~~~~~ 233 (509)
|.++|.+-.+- -..+|..|...|.-.|+++.|+...+.- ++.|-. .....+..+..++.-.|+++.
T Consensus 174 Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~ 253 (639)
T KOG1130|consen 174 AVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFEL 253 (639)
T ss_pred HHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHh
Confidence 33443321110 1234555555555567777777665432 222211 123456667777777788888
Q ss_pred HHHHHHHHH----HcCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---------CChhhHHHHHHHHHhCCChHH
Q 010496 234 GLWIHRYVL----KQDF-KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---------RTLVSWNSIIVGFAVNGFVGE 299 (509)
Q Consensus 234 a~~~~~~~~----~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~ 299 (509)
|.+.|+... +.|- ......+..|...|.-..++++|+.++.+-.. -....+..|..+|...|..++
T Consensus 254 A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~k 333 (639)
T KOG1130|consen 254 AIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRK 333 (639)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHH
Confidence 877776544 2331 22345566677777777777888777765431 134567777777777777777
Q ss_pred HHHHHHHHHH
Q 010496 300 ALEYFNSMQK 309 (509)
Q Consensus 300 A~~~~~~m~~ 309 (509)
|+...+.-.+
T Consensus 334 Al~fae~hl~ 343 (639)
T KOG1130|consen 334 ALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHH
Confidence 7776665443
No 206
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.31 Score=48.54 Aligned_cols=109 Identities=17% Similarity=0.111 Sum_probs=67.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 010496 283 SWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLY 362 (509)
Q Consensus 283 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 362 (509)
+.+--+.-+...|+..+|.++-.+.. -||-..|..-+.++...+++++-+++-+..+. +.-|.-++..|
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks-------PIGy~PFVe~c 754 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS-------PIGYLPFVEAC 754 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC-------CCCchhHHHHH
Confidence 34444555666777777776666543 45666666667777777777765555444331 22355566777
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010496 363 SRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMK 408 (509)
Q Consensus 363 ~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 408 (509)
.+.|+.++|.+++.+.+--+ -.+.+|.+.|++.+|.++.-
T Consensus 755 ~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 755 LKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHH
Confidence 77788888777777764222 34566667777777766443
No 207
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.12 E-value=0.003 Score=43.10 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=26.2
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 010496 227 NVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH 277 (509)
Q Consensus 227 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 277 (509)
..|++++|.++|+++.+.. |.+..++..++.+|.+.|++++|.++++++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 52 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLL 52 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCH
T ss_pred hccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455555555555555543 4445555555555555555555555555554
No 208
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.08 E-value=0.003 Score=59.12 Aligned_cols=64 Identities=20% Similarity=0.051 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 384 EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS---NYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 384 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
...++.+..+|...|++++|+..|+++++++|++.. +|..++.+|...|+.++|+..+++.++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445555666666666666666666666666665543 2566666666666666666666665553
No 209
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.04 E-value=0.087 Score=45.41 Aligned_cols=135 Identities=14% Similarity=0.038 Sum_probs=90.6
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHH----
Q 010496 282 VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGC---- 357 (509)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---- 357 (509)
..-+.++..+.-.|.+.-....+.+.++...+-++.....|.+.-.+.|+.+.|...|++..+..+ ..+.-..+.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~-kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQ-KLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hhhccchhHHHHh
Confidence 344566667777788888888888888876566777778888888888999988888887764322 222222222
Q ss_pred -HHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010496 358 -IVDLYSRAGRLEDALNVVENMP-M-KPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV 417 (509)
Q Consensus 358 -li~~~~~~g~~~~A~~~~~~~~-~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 417 (509)
....|.-.+++.+|...+.++. . ..++...|.-.-+..-.|+..+|.+.++.+++..|..
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 2233455667777777777763 2 2244455554445556778888888888888877763
No 210
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.04 E-value=0.00046 Score=39.34 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=31.0
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHH
Q 010496 406 LMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGK 439 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 439 (509)
+|+++++.+|+++.+|..++.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3688999999999999999999999999999863
No 211
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.98 E-value=0.018 Score=51.34 Aligned_cols=102 Identities=18% Similarity=0.219 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHH
Q 010496 317 VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN----EVVLGSL 390 (509)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l 390 (509)
..|...+....+.|++++|+..|+.+.+.+.-.+ ....+..+..+|...|++++|...|+.+ ...|+ ...+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455444444566788888888888875432221 1345667778888888888888888776 22232 3355556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010496 391 LAACRTKGDIILAERLMKYLVDLDPGVD 418 (509)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 418 (509)
+..+...|+.++|.++|+++++..|++.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 6677788999999999999998888754
No 212
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.97 E-value=0.2 Score=42.99 Aligned_cols=181 Identities=12% Similarity=0.053 Sum_probs=87.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcH-hHHHHHH
Q 010496 181 ISWTALLNGFVKRGYFEEALECFREMQISGVE--PDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNV-KVCNTLI 257 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~--p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~ 257 (509)
...-.....+...|++.+|.+.|+.+...-.. --....-.++.++.+.|+++.|...++..++.- |-+. .-+...+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~~A~Y~ 84 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhhHHHH
Confidence 34445566677788888888888888765211 112344456677778888888888888877653 2111 1122222
Q ss_pred HHHHhcCCHHHHHHHHHhccCCCh-------hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 010496 258 DLYSRCGCIEFARQVFQRMHKRTL-------VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAG 330 (509)
Q Consensus 258 ~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 330 (509)
.+.+.-....... ....|. ..+..++.-|=...-..+|...+..+... =...-..+..-|.+.|
T Consensus 85 ~g~~~~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 85 LGLSYYKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRG 155 (203)
T ss_dssp HHHHHHHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcc
Confidence 2221111111110 011111 12333444444445555555555444332 0011112445577777
Q ss_pred CHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHH
Q 010496 331 LIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDA 371 (509)
Q Consensus 331 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A 371 (509)
.+..|..-++.+.+...-.+. ......++.+|.+.|..+.+
T Consensus 156 ~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred cHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 777777777777754432221 23445566677777766643
No 213
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.95 E-value=0.0034 Score=43.56 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=48.2
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 010496 360 DLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSN 420 (509)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 420 (509)
..|.+.+++++|.++++.+ ...| +...+......+...|++++|.+.++++++..|+++..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~ 65 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA 65 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence 4677888888888888887 5555 45577777888888999999999999999888876544
No 214
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=96.92 E-value=0.46 Score=46.26 Aligned_cols=382 Identities=13% Similarity=0.069 Sum_probs=226.7
Q ss_pred CCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHH-HhhcCCCccchhHHHHHHHHHHHhCCCCCchH
Q 010496 41 TVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLL-SGCADFPSQCLFLGAMIHGLVCKLGLDRNNVM 119 (509)
Q Consensus 41 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 119 (509)
..-+-..|..+|.---.....+.+..++..++.+ -|....|=.-. ..=.+. |..+.+.++|+..+..- |-+..
T Consensus 41 ~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~kl--g~~~~s~~Vfergv~ai--p~Svd 114 (577)
T KOG1258|consen 41 DSLDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKL--GNAENSVKVFERGVQAI--PLSVD 114 (577)
T ss_pred chhcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHhh--hhHHH
Confidence 3345567777777666666667777888888753 56655432222 112344 77788888888777663 34477
Q ss_pred HHHHHHHHHH-hcCCchHHHHHHHhcCCC------ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHH
Q 010496 120 VGTALLDMYA-KFGRMDLATVVFDAMRVK------SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVK 192 (509)
Q Consensus 120 ~~~~l~~~~~-~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 192 (509)
.|......++ ..|+.+.....|+....- +...|...|.--...+++.....+++.+.+-....|+..-..|.+
T Consensus 115 lW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~ 194 (577)
T KOG1258|consen 115 LWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQ 194 (577)
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHH
Confidence 7766665544 457888888888877632 556677777777788888888888887765443433333333221
Q ss_pred ---c------CChHHHHHHHHHHHHc------C-------------CCCCH---hHHHHHHHH-------HHccCCHHHH
Q 010496 193 ---R------GYFEEALECFREMQIS------G-------------VEPDY---VTIISVLNA-------CANVGTLGIG 234 (509)
Q Consensus 193 ---~------~~~~~A~~~~~~m~~~------~-------------~~p~~---~~~~~l~~~-------~~~~~~~~~a 234 (509)
. ...+++.++-...... + ..|.. ...+.+... +...-.....
T Consensus 195 ~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~k 274 (577)
T KOG1258|consen 195 LLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEK 274 (577)
T ss_pred HHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence 1 1223333322221110 0 01110 001111111 1111111222
Q ss_pred HHHHHHHHHcC-------CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHhCCChHHHHHHH
Q 010496 235 LWIHRYVLKQD-------FKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYF 304 (509)
Q Consensus 235 ~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~ 304 (509)
...++.-++.- .+++..+|...+..-...|+++.+.-+|++..-+ -...|-..+......|+.+-|..++
T Consensus 275 r~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~ 354 (577)
T KOG1258|consen 275 RWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVL 354 (577)
T ss_pred HHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHH
Confidence 22222222221 1234567888888888999999999999998755 3345666666666669999998888
Q ss_pred HHHHHCCCC--CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHHH---HHHHhC
Q 010496 305 NSMQKEGFK--PDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDAL---NVVENM 378 (509)
Q Consensus 305 ~~m~~~g~~--p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~---~~~~~~ 378 (509)
....+-.++ |....+.+.+ +-..|+++.|..+++.+.+. . |+ +..-..-+....+.|..+.+. +++...
T Consensus 355 ~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~ 429 (577)
T KOG1258|consen 355 ARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSI 429 (577)
T ss_pred HhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHh
Confidence 877665333 2222233322 34578999999999999963 3 55 333334455667788888887 444443
Q ss_pred -CCCCCHHHHHHH----HH-HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 010496 379 -PMKPNEVVLGSL----LA-ACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGK 433 (509)
Q Consensus 379 -~~~p~~~~~~~l----~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 433 (509)
..+-+..+...+ .+ .+.-.++.+.|..++.++.+..|.+...|..++......+.
T Consensus 430 ~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 430 YEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred cccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 212222222222 22 24456789999999999999999998899999988777653
No 215
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.89 E-value=0.0037 Score=44.10 Aligned_cols=62 Identities=15% Similarity=0.121 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCC---CchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVDL----DPGV---DSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.+++.+...|...|++++|+..++++++. ++.+ ..++..++.+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 36777777888888888888888887753 2222 23577888888888888888888877653
No 216
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=96.89 E-value=0.35 Score=47.76 Aligned_cols=248 Identities=13% Similarity=0.084 Sum_probs=147.7
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHH----------HHHHHccCCHHHH
Q 010496 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISV----------LNACANVGTLGIG 234 (509)
Q Consensus 165 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l----------~~~~~~~~~~~~a 234 (509)
+++|.++.+. .|.+..|..+.......-.++.|...|-+... .+.......| ...-.--|++++|
T Consensus 679 ledA~qfiEd--nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~d---Y~Gik~vkrl~~i~s~~~q~aei~~~~g~feea 753 (1189)
T KOG2041|consen 679 LEDAIQFIED--NPHPRLWRLLAEYALFKLALDTAEHAFVRCGD---YAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEA 753 (1189)
T ss_pred hHHHHHHHhc--CCchHHHHHHHHHHHHHHhhhhHhhhhhhhcc---ccchhHHHHhhhhhhHHHHhHhHhhhhcchhHh
Confidence 4555555544 34456666666555555555555555443322 1111111111 1122335888999
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010496 235 LWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR-----TLVSWNSIIVGFAVNGFVGEALEYFNSMQK 309 (509)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 309 (509)
+++|-++-+++ ..+..+.+.|+|-.+..+++.-... -...|+.+...+.....|++|.+.|..-..
T Consensus 754 ek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~ 824 (1189)
T KOG2041|consen 754 EKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD 824 (1189)
T ss_pred hhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 98887777654 3567788889998888888765432 125788888889888889999888875322
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH
Q 010496 310 EGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGS 389 (509)
Q Consensus 310 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~ 389 (509)
. ...+.++.+..++++-+.+-+.+. .+....-.+.+++.+.|.-++|.+.+-+-+.+ ..
T Consensus 825 ------~---e~~~ecly~le~f~~LE~la~~Lp------e~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p------ka 883 (1189)
T KOG2041|consen 825 ------T---ENQIECLYRLELFGELEVLARTLP------EDSELLPVMADMFTSVGMCDQAVEAYLRRSLP------KA 883 (1189)
T ss_pred ------h---HhHHHHHHHHHhhhhHHHHHHhcC------cccchHHHHHHHHHhhchHHHHHHHHHhccCc------HH
Confidence 1 224556666666665554444333 34455666788888888888888877665432 12
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCC-----------CCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 390 LLAACRTKGDIILAERLMKYLVDLDPG-----------VDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
.+.+|...+++.+|.++.++..-.... ...-..--+..+.+.|+.-+|-+++.+|.+.
T Consensus 884 Av~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 884 AVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 345566667777777665543110000 0011223345677788888888888888654
No 217
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.88 E-value=0.1 Score=50.84 Aligned_cols=179 Identities=12% Similarity=0.137 Sum_probs=91.2
Q ss_pred HHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 010496 184 TALLNGFVKRGY--FEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYS 261 (509)
Q Consensus 184 ~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (509)
+..-.+|.+..+ +-+.+.-++++++.|-.|+... +...++-.|++.+|.++|.+--.. +..+++|-
T Consensus 602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~G~e---------nRAlEmyT 669 (1081)
T KOG1538|consen 602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRSGHE---------NRALEMYT 669 (1081)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHcCch---------hhHHHHHH
Confidence 333445544443 3445555677777776677543 345667778888888887543221 22344455
Q ss_pred hcCCHHHHHHHHHhccCC--------------ChhhHHHHHHHHHhCCChHHHHHHHHH------HHHCCC---CCCHHH
Q 010496 262 RCGCIEFARQVFQRMHKR--------------TLVSWNSIIVGFAVNGFVGEALEYFNS------MQKEGF---KPDGVS 318 (509)
Q Consensus 262 ~~g~~~~a~~~~~~~~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~------m~~~g~---~p~~~~ 318 (509)
....++.|.+++...... ++.-=.+....+...|+.++|..+.-+ +.+.+- ..+..+
T Consensus 670 DlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~ 749 (1081)
T KOG1538|consen 670 DLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREP 749 (1081)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhH
Confidence 555555555554433210 111112233444455555555544221 111111 122334
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 010496 319 FTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNE 384 (509)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 384 (509)
...+...+-+...+.-|.++|.+|-. ...+++.....+++.+|..+-++. ++.||+
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dV 806 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDV 806 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccc
Confidence 44444444455556666666666652 233566667777777777777776 344443
No 218
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.88 E-value=0.002 Score=39.40 Aligned_cols=42 Identities=31% Similarity=0.322 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLAN 426 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 426 (509)
.++..+...|...|++++|.++++++++..|+++..+..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 356778889999999999999999999999999888877764
No 219
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.88 E-value=0.031 Score=47.98 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=38.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHHcCCchHHH
Q 010496 390 LLAACRTKGDIILAERLMKYLVDLDPGVDS---NYVLLANMYAAVGKWDGAG 438 (509)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~ 438 (509)
+...|.+.|.+..|..-++.+++.-|+.+. +...++.+|.+.|..+.|.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 456788999999999999999998888543 5778888899999887544
No 220
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.015 Score=53.32 Aligned_cols=62 Identities=16% Similarity=0.033 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
.+..+..++.+.+++..|++...+.++.+|.|..++..-+.+|...|+++.|+..|+++.+.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 44555555666666666666666666666666666666666666666666666666666553
No 221
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.73 E-value=0.057 Score=41.17 Aligned_cols=140 Identities=14% Similarity=0.179 Sum_probs=85.3
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHH
Q 010496 292 AVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDA 371 (509)
Q Consensus 292 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 371 (509)
.-.|..++..+++.+.... .+..-++.+|.-....-+-+-..+.++.+-+-+.+. .+|+....
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3467777777777777763 245556666655555555555566666555322221 23333444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010496 372 LNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQ 450 (509)
Q Consensus 372 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 450 (509)
...+-.++ .+.......+..+...|+-+.-.+++..+.+.+..+|.....++.+|.+.|+..++-+++.+..++|+.
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33333332 234455666778889999999999999988766667888999999999999999999999999999874
No 222
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.67 E-value=0.009 Score=48.25 Aligned_cols=69 Identities=30% Similarity=0.354 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh-----CCCccCC
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG-----RGIQKKP 453 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~ 453 (509)
.....++..+...|++++|..++++++..+|-+...|..++.+|...|+..+|.++|+++.. .|+.|.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 35566777788999999999999999999999999999999999999999999999998853 4776654
No 223
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.11 Score=46.07 Aligned_cols=96 Identities=7% Similarity=-0.019 Sum_probs=46.3
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhC---CChHHHHHHHHHHHHCCCCCCHHHHH
Q 010496 247 KDNVKVCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVN---GFVGEALEYFNSMQKEGFKPDGVSFT 320 (509)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~m~~~g~~p~~~~~~ 320 (509)
|-|...|-.|..+|...|+++.|..-|.+.. .+++..+..+..++... ....++..+|++++... +-|..+..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 4445555555555555555555555555443 22344444444433321 12345555555555531 12333344
Q ss_pred HHHHHHhccCCHHHHHHHHHHhH
Q 010496 321 GALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 321 ~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
.|...+...|++.+|...|+.|.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHH
Confidence 44445555566666666666655
No 224
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.55 E-value=0.044 Score=50.38 Aligned_cols=96 Identities=15% Similarity=0.184 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYA 429 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 429 (509)
..++..|.-+|.+.+++.+|++..+.. ...| |...+..-..+|...|+++.|...|+++.+..|.|..+-..|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345777888999999999999988876 4444 66677777899999999999999999999999999888888888877
Q ss_pred HcCCchHH-HHHHHHHHhC
Q 010496 430 AVGKWDGA-GKIRRTMKGR 447 (509)
Q Consensus 430 ~~g~~~~A-~~~~~~m~~~ 447 (509)
+..++.+. .++|..|-..
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 77665554 7888888654
No 225
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=96.54 E-value=0.71 Score=43.37 Aligned_cols=115 Identities=13% Similarity=0.028 Sum_probs=73.9
Q ss_pred hCCC-hHHHHHHHHHHHHCCCCCCHH-HHHH----HHHHHhc---cCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHH
Q 010496 293 VNGF-VGEALEYFNSMQKEGFKPDGV-SFTG----ALTACSH---AGLIEDGLRYFDIMKKIYRVSPR----IEHYGCIV 359 (509)
Q Consensus 293 ~~~~-~~~A~~~~~~m~~~g~~p~~~-~~~~----li~~~~~---~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li 359 (509)
+.|. -++|+++++.+..- .|... .-+. +=.+|.+ ...+..-..+-+-+. ..|++|- ...-|.|.
T Consensus 391 ~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~-e~gl~~i~i~e~eian~La 467 (549)
T PF07079_consen 391 EIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFIT-EVGLTPITISEEEIANFLA 467 (549)
T ss_pred hcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH-hcCCCcccccHHHHHHHHH
Confidence 4454 78899999888874 33322 2222 2222322 123333333333334 6677763 34445554
Q ss_pred HH--HHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010496 360 DL--YSRAGRLEDALNVVENM-PMKPNEVVLGSLLAACRTKGDIILAERLMKYL 410 (509)
Q Consensus 360 ~~--~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 410 (509)
++ +...|++.++.-.-... ++.|++.+|..+.-++....++++|..++..+
T Consensus 468 DAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 468 DAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 43 56789999987665555 68899999999999999999999999999876
No 226
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.48 E-value=0.098 Score=41.04 Aligned_cols=88 Identities=18% Similarity=0.132 Sum_probs=55.3
Q ss_pred HHHHhcCChHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-HHHHHHH--HHHc
Q 010496 360 DLYSRAGRLEDALNVVENMP----MKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSN-YVLLANM--YAAV 431 (509)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~~----~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~l~~~--~~~~ 431 (509)
....+.|++++|.+.|+.+. ..| ....-..|+.++.+.+++++|...+++.+++.|.++.+ |.....+ +.+.
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHH
Confidence 34456677777777777662 112 23455667777888888888888888888888875543 3333333 3333
Q ss_pred CC---------------chHHHHHHHHHHhC
Q 010496 432 GK---------------WDGAGKIRRTMKGR 447 (509)
Q Consensus 432 g~---------------~~~A~~~~~~m~~~ 447 (509)
.. ..+|..-|+++++.
T Consensus 98 ~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~ 128 (142)
T PF13512_consen 98 DEGSLQSFFRSDRDPTPARQAFRDFEQLVRR 128 (142)
T ss_pred hhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence 33 55677777777664
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.43 E-value=0.0061 Score=42.95 Aligned_cols=60 Identities=23% Similarity=0.357 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-----CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 353 EHYGCIVDLYSRAGRLEDALNVVENM-----PMK---PN-EVVLGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 353 ~~~~~li~~~~~~g~~~~A~~~~~~~-----~~~---p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
.+|+.+...|...|++++|+..+++. ... |+ ..++..+...+...|++++|++.++++.+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34555555666666666665555544 011 22 33666667777777777777777777655
No 228
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.42 E-value=0.061 Score=41.72 Aligned_cols=53 Identities=13% Similarity=0.211 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 010496 311 GFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYS 363 (509)
Q Consensus 311 g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 363 (509)
...|+..+..+++.+|+..|++..|.++++...+.++++.+...|..|+.-..
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 35677788888888888888888888888888777777777777777776443
No 229
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.39 E-value=0.11 Score=46.40 Aligned_cols=149 Identities=12% Similarity=0.020 Sum_probs=77.7
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHH----HHHHHHhcCChH
Q 010496 294 NGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGC----IVDLYSRAGRLE 369 (509)
Q Consensus 294 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----li~~~~~~g~~~ 369 (509)
.|+..+|-..++++++. .+.|...+...-.+|...|+...-...++++.. ...++...|.. +.-++..+|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccch
Confidence 45555555556665554 334445555555566666666666666666553 22344333322 222334566666
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 370 DALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG----VDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 370 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
+|++.-++. .+.| |...-.++...+-..|++.++.+++.+-...-.. -...|...+..+...+.++.|+++|+.
T Consensus 193 dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 193 DAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred hHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 666666554 3333 4445555555566666666666665544332111 111355555556666666666666654
Q ss_pred HH
Q 010496 444 MK 445 (509)
Q Consensus 444 m~ 445 (509)
-+
T Consensus 273 ei 274 (491)
T KOG2610|consen 273 EI 274 (491)
T ss_pred HH
Confidence 43
No 230
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.38 E-value=0.04 Score=47.91 Aligned_cols=106 Identities=8% Similarity=0.007 Sum_probs=81.8
Q ss_pred CCCCCCccchHHHHHHHHc-----CCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCC--------------ccchh
Q 010496 39 KSTVNPTVQWTSSISRHCR-----SGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFP--------------SQCLF 99 (509)
Q Consensus 39 ~~~~p~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~--------------~~~~~ 99 (509)
.+...|-.+|-..+..+.. .+..+=.-..++.|.+.|+.-|..+|..||..+-+.. .....
T Consensus 61 ~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~ 140 (406)
T KOG3941|consen 61 EPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQN 140 (406)
T ss_pred CcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhh
Confidence 4567788888888888753 3567777788999999999999999999999875542 24455
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCch-HHHHHHHhcC
Q 010496 100 LGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMD-LATVVFDAMR 145 (509)
Q Consensus 100 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~ 145 (509)
-+..++++|...|+.|+ ..+-..|++++.+.+..- +..++.-.|.
T Consensus 141 C~I~vLeqME~hGVmPd-kE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 141 CAIKVLEQMEWHGVMPD-KEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHHHHHcCCCCc-hHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 67888999999999998 888899999988877643 4444444443
No 231
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.34 E-value=0.84 Score=42.03 Aligned_cols=286 Identities=17% Similarity=0.070 Sum_probs=194.6
Q ss_pred HHHHHHHHHHHh--cCCchHHHHHHHhcC---CCChHHHHHHHHH--HHhCCCHHHHHHHHhcCCCCCHhH----HHHHH
Q 010496 119 MVGTALLDMYAK--FGRMDLATVVFDAMR---VKSSFTWNAMIDG--YMRRGDIESAVRMFDEMPVRDAIS----WTALL 187 (509)
Q Consensus 119 ~~~~~l~~~~~~--~g~~~~A~~~~~~~~---~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~~----~~~li 187 (509)
..|..|-.+++. .|+-..|.+.-.+.. ..|....-.++.+ -.-.|+++.|.+-|+.|... +.+ ...|.
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-PEtRllGLRgLy 161 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-PETRLLGLRGLY 161 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-hHHHHHhHHHHH
Confidence 445666665544 578888888877655 3355555555544 45679999999999999753 222 23344
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCcHhHH--HHHHHHH--H
Q 010496 188 NGFVKRGYFEEALECFREMQISGVEPD-YVTIISVLNACANVGTLGIGLWIHRYVLKQD-FKDNVKVC--NTLIDLY--S 261 (509)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~--~~l~~~~--~ 261 (509)
-...+.|..+.|..+-+..-.. -|. ......++...+..|+++.|+++++.-.... +.++..-- ..|+.+- .
T Consensus 162 leAqr~GareaAr~yAe~Aa~~--Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEK--APQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhh--ccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 4456789999999988887664 343 5677889999999999999999998776543 23333211 1122111 1
Q ss_pred -hcCCHHHHHHHHHhccC--CChh-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHH
Q 010496 262 -RCGCIEFARQVFQRMHK--RTLV-SWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLR 337 (509)
Q Consensus 262 -~~g~~~~a~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~ 337 (509)
-..+...|...-.+..+ ||.+ .--....++.+.|+..++-.+++.+-+....|+.. ..|.+...-+.+..
T Consensus 240 ~ldadp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia------~lY~~ar~gdta~d 313 (531)
T COG3898 240 LLDADPASARDDALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA------LLYVRARSGDTALD 313 (531)
T ss_pred HhcCChHHHHHHHHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH------HHHHHhcCCCcHHH
Confidence 12345666666555443 4433 33445567899999999999999999986666533 23444444455666
Q ss_pred HHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhc
Q 010496 338 YFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEVVLGSLLAACR-TKGDIILAERLMKYLVDL 413 (509)
Q Consensus 338 ~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~ 413 (509)
-+++..+...++|+ ......+.++-...|++..|..--+.. ...|....|..|...-. ..|+-.++...+.+.++.
T Consensus 314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 66776655567775 666777888888999999888777665 56788888888887654 459999999999988873
No 232
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.32 E-value=1.5 Score=44.81 Aligned_cols=95 Identities=13% Similarity=0.065 Sum_probs=50.0
Q ss_pred CchHHHHHHHhcCC-C-ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 010496 133 RMDLATVVFDAMRV-K-SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISG 210 (509)
Q Consensus 133 ~~~~A~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 210 (509)
.+++....+++... | ....-...+..+.+.++++....++.. ...+...-.....+....|+.++|.+....+-..|
T Consensus 81 ~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~~~~~~~-~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g 159 (644)
T PRK11619 81 PAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGLLAFSPE-KPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG 159 (644)
T ss_pred CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHHHHhcCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC
Confidence 45555555555543 2 112223344455566777777763322 23355555556666777777766666666654444
Q ss_pred CCCCHhHHHHHHHHHHccC
Q 010496 211 VEPDYVTIISVLNACANVG 229 (509)
Q Consensus 211 ~~p~~~~~~~l~~~~~~~~ 229 (509)
......+..++..+.+.|
T Consensus 160 -~~~p~~cd~l~~~~~~~g 177 (644)
T PRK11619 160 -KSLPNACDKLFSVWQQSG 177 (644)
T ss_pred -CCCChHHHHHHHHHHHcC
Confidence 333445555555554444
No 233
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.29 E-value=0.62 Score=39.97 Aligned_cols=50 Identities=14% Similarity=0.134 Sum_probs=22.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC----CCCCchHHHHHHHHHHcCCchHHHHH
Q 010496 390 LLAACRTKGDIILAERLMKYLVDLD----PGVDSNYVLLANMYAAVGKWDGAGKI 440 (509)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~ 440 (509)
.|-.+....++..|.+.++.-.+.. +.+..+...|+.+| ..|+.+++.++
T Consensus 196 ~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv 249 (308)
T KOG1585|consen 196 AILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV 249 (308)
T ss_pred HHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence 3334444455555555555543321 22333444444444 33444444443
No 234
>PRK15331 chaperone protein SicA; Provisional
Probab=96.28 E-value=0.068 Score=42.96 Aligned_cols=87 Identities=15% Similarity=0.043 Sum_probs=37.5
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 010496 188 NGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIE 267 (509)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 267 (509)
.-+...|++++|..+|+-+...+ .-+..-+..|..++-..+++++|...|......+ .-|...+.....+|...|+.+
T Consensus 45 y~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 45 YEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHH
Confidence 33444555555555555444432 1233333344444444444555554444444333 223333333444444444444
Q ss_pred HHHHHHHhc
Q 010496 268 FARQVFQRM 276 (509)
Q Consensus 268 ~a~~~~~~~ 276 (509)
.|...|..+
T Consensus 123 ~A~~~f~~a 131 (165)
T PRK15331 123 KARQCFELV 131 (165)
T ss_pred HHHHHHHHH
Confidence 444444443
No 235
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=96.19 E-value=2.2 Score=48.68 Aligned_cols=318 Identities=9% Similarity=0.026 Sum_probs=181.0
Q ss_pred HHHHHHHhcCCchHHHHHHHhcC----CC--ChHHHHHHHHHHHhCCCHHHHHHHHhc-CCCCCHhHHHHHHHHHHHcCC
Q 010496 123 ALLDMYAKFGRMDLATVVFDAMR----VK--SSFTWNAMIDGYMRRGDIESAVRMFDE-MPVRDAISWTALLNGFVKRGY 195 (509)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~ 195 (509)
.|..+-.+++.+.+|...++.-. .. ...-|-.+...|+.-+++|...-+... ...++ ....|......|+
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~ 1464 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGN 1464 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhcc
Confidence 45556677899999999999842 11 223344455589999998888777763 33322 2334556678899
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010496 196 FEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQR 275 (509)
Q Consensus 196 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 275 (509)
+..|...|+.+.+.+ ++...++.-++......+.+..+.-..+-.....-+.....++.-+++-.+.++++.....+.
T Consensus 1465 ~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1465 WADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred HHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence 999999999999874 444778888888888888887777655554443312222334444666678888888888776
Q ss_pred ccCCChhhHHHH--HHHHHhCCChH--HHHHHHHHHHHCCCCC---------CHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 010496 276 MHKRTLVSWNSI--IVGFAVNGFVG--EALEYFNSMQKEGFKP---------DGVSFTGALTACSHAGLIEDGLRYFDIM 342 (509)
Q Consensus 276 ~~~~~~~~~~~l--~~~~~~~~~~~--~A~~~~~~m~~~g~~p---------~~~~~~~li~~~~~~~~~~~a~~~~~~~ 342 (509)
..+..+|.+. +..+.+...-+ .-.+.++.+.+.-+.| -...|..++..+.-. +.+.-.+.+...
T Consensus 1543 --~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~~~~~l~~~ 1619 (2382)
T KOG0890|consen 1543 --DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELENSIEELKKV 1619 (2382)
T ss_pred --cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHHHHHHhhcc
Confidence 4455555554 33333222211 1112333322211111 012333333322211 111111111111
Q ss_pred HHhcCCCCCHHHHHHHH---HHHHhcCChHHHHH-HHHhCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010496 343 KKIYRVSPRIEHYGCIV---DLYSRAGRLEDALN-VVENMPMKPN-----EVVLGSLLAACRTKGDIILAERLMKYLVDL 413 (509)
Q Consensus 343 ~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~-~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 413 (509)
.......-+...|..-+ +.+.+...+--|.+ .+.....+|+ ..+|-...+.....|.++.|...+-.+.+.
T Consensus 1620 s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~ 1699 (2382)
T KOG0890|consen 1620 SYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES 1699 (2382)
T ss_pred CccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc
Confidence 10000011111222221 12222222222211 1111112222 448888888899999999999988888777
Q ss_pred CCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010496 414 DPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQ 450 (509)
Q Consensus 414 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 450 (509)
+ .+..+.-.+..++..|+-..|+.++++-.+....
T Consensus 1700 r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1700 R--LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred c--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence 6 4678999999999999999999999998865443
No 236
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.15 E-value=0.078 Score=42.74 Aligned_cols=71 Identities=15% Similarity=0.137 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCcHhHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLK-----QDFKDNVKVC 253 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~ 253 (509)
+...++..+...|++++|..+.+.+.... +-+...|..+|.++...|+...|.+.|+.+.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34455666677777888888777777753 44667777777788888887777777776542 4666766543
No 237
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.14 E-value=1.2 Score=46.99 Aligned_cols=151 Identities=16% Similarity=0.142 Sum_probs=85.4
Q ss_pred CCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHH----HHHHHHHccCCHHHHHHHH
Q 010496 163 GDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTII----SVLNACANVGTLGIGLWIH 238 (509)
Q Consensus 163 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~----~l~~~~~~~~~~~~a~~~~ 238 (509)
++++.|+.-+..+. ...|.-.+..--+.|.+.+|+.++ .|+...+. +....+.....+++|.-.|
T Consensus 894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y 962 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAYADHLREELMSDEAALMY 962 (1265)
T ss_pred HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 45566666555554 223344444445566666666554 44544443 3344455666677776666
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-Chhh--HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC
Q 010496 239 RYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR-TLVS--WNSIIVGFAVNGFVGEALEYFNSMQKEGFKPD 315 (509)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~--~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~ 315 (509)
+..-+ ....+.+|..+|+|.+|+.+..++... |... -..|+.-+...+++-+|-++..+.... |.
T Consensus 963 e~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~ 1030 (1265)
T KOG1920|consen 963 ERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PE 1030 (1265)
T ss_pred HHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HH
Confidence 54433 223567777788888888887777654 3222 255667777778877777777765542 11
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHH
Q 010496 316 GVSFTGALTACSHAGLIEDGLRYFDI 341 (509)
Q Consensus 316 ~~~~~~li~~~~~~~~~~~a~~~~~~ 341 (509)
-.+..+++...+++|.++-..
T Consensus 1031 -----~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1031 -----EAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred -----HHHHHHhhHhHHHHHHHHHHh
Confidence 123334555556666554443
No 238
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=96.11 E-value=2.4 Score=45.00 Aligned_cols=52 Identities=15% Similarity=0.265 Sum_probs=26.2
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHH
Q 010496 359 VDLYSRAGRLEDALNVVENMPMKPNEVV--LGSLLAACRTKGDIILAERLMKYL 410 (509)
Q Consensus 359 i~~~~~~g~~~~A~~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~ 410 (509)
+.+|..+|++.+|+.+..++...-+... -..|+.-+...++.-+|-++....
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 4455566666666666655543323222 244455555555555555554443
No 239
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.06 E-value=0.057 Score=50.87 Aligned_cols=63 Identities=16% Similarity=0.077 Sum_probs=47.9
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010496 351 RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNE----VVLGSLLAACRTKGDIILAERLMKYLVDL 413 (509)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 413 (509)
+...++.+..+|.+.|++++|+..|++. .+.|+. .+|..+..+|...|+.++|++.++++++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4667777788888888888888888774 666763 34777888888888888888888888775
No 240
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.06 E-value=1.7 Score=42.77 Aligned_cols=156 Identities=14% Similarity=0.074 Sum_probs=74.2
Q ss_pred HHHHHHHHHhcCCchHHHHHHHhcCCC-C---h------HHHHHHHHHHHh----CCCHHHHHHHHhcCCC--CCHhHHH
Q 010496 121 GTALLDMYAKFGRMDLATVVFDAMRVK-S---S------FTWNAMIDGYMR----RGDIESAVRMFDEMPV--RDAISWT 184 (509)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-~---~------~~~~~l~~~~~~----~~~~~~A~~~~~~~~~--~~~~~~~ 184 (509)
...++...+=.||-+.+++.+.+..+. + + ..|+..+..++- ..+.+.|.+++..+.. |+...|.
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~lfl 270 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSALFL 270 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcHHHH
Confidence 344555555556666666666554432 1 1 123333332222 3345666666665554 3433332
Q ss_pred -HHHHHHHHcCChHHHHHHHHHHHHcC--C-CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHH-HHH
Q 010496 185 -ALLNGFVKRGYFEEALECFREMQISG--V-EPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTL-IDL 259 (509)
Q Consensus 185 -~li~~~~~~~~~~~A~~~~~~m~~~~--~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~ 259 (509)
.-.+.+...|+.++|++.|+...... . +.....+--+..++.-..++++|...+..+.+.. ..+..+|.-+ ..+
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c 349 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAAC 349 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHH
Confidence 22345555666666666666543211 0 1112223344455566666666666666666554 2333333222 233
Q ss_pred HHhcCCH-------HHHHHHHHhcc
Q 010496 260 YSRCGCI-------EFARQVFQRMH 277 (509)
Q Consensus 260 ~~~~g~~-------~~a~~~~~~~~ 277 (509)
+...|+. ++|.++|.++.
T Consensus 350 ~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 350 LLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHhhccchhhhhhHHHHHHHHHHHH
Confidence 3444555 66666666554
No 241
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.99 E-value=1.4 Score=41.24 Aligned_cols=79 Identities=15% Similarity=0.081 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC---CCCCHhHHHHHHHHHHc---cCCHHHHHHHHHHHHHcCCCCcHhHHHHH
Q 010496 183 WTALLNGFVKRGYFEEALECFREMQISG---VEPDYVTIISVLNACAN---VGTLGIGLWIHRYVLKQDFKDNVKVCNTL 256 (509)
Q Consensus 183 ~~~li~~~~~~~~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 256 (509)
...++-+|....+++..+++++.+.... +.-+...--...-++.+ .|+.++|++++..++.....++..+|..+
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~ 223 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL 223 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence 3344445666666666666666665531 00011111122333444 66666666666665444445666666666
Q ss_pred HHHHH
Q 010496 257 IDLYS 261 (509)
Q Consensus 257 ~~~~~ 261 (509)
+..|-
T Consensus 224 GRIyK 228 (374)
T PF13281_consen 224 GRIYK 228 (374)
T ss_pred HHHHH
Confidence 55554
No 242
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.97 E-value=0.91 Score=43.37 Aligned_cols=100 Identities=12% Similarity=0.186 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCH--HHHHHHHH
Q 010496 317 VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPM--KPNE--VVLGSLLA 392 (509)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~p~~--~~~~~l~~ 392 (509)
..-..+..++.+.|+.++|++.++++.+.........+...|+.++...+.+.++..++.+-.. -|.. ..|+..+-
T Consensus 260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL 339 (539)
T PF04184_consen 260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL 339 (539)
T ss_pred hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence 3334566677788999999999999985443333455778899999999999999999888631 2332 35554432
Q ss_pred HHHhcCC---------------HHHHHHHHHHHHhcCCC
Q 010496 393 ACRTKGD---------------IILAERLMKYLVDLDPG 416 (509)
Q Consensus 393 ~~~~~g~---------------~~~a~~~~~~~~~~~~~ 416 (509)
-+...++ -..|.+.+.++++.+|.
T Consensus 340 kaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH 378 (539)
T PF04184_consen 340 KARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH 378 (539)
T ss_pred HHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence 2222221 23466788888887765
No 243
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.95 E-value=1.5 Score=41.29 Aligned_cols=372 Identities=10% Similarity=0.001 Sum_probs=203.0
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcC
Q 010496 66 LEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMR 145 (509)
Q Consensus 66 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 145 (509)
.+=+++.+ .+-|..+|-.|+.-+... +..+..++.++++..-- |--+.+|..-+.+-...++++....+|.+..
T Consensus 30 rLRerIkd--NPtnI~S~fqLiq~~~tq--~s~~~~re~yeq~~~pf--p~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 30 RLRERIKD--NPTNILSYFQLIQYLETQ--ESMDAEREMYEQLSSPF--PIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred HHHHHhhc--CchhHHHHHHHHHHHhhh--hhHHHHHHHHHHhcCCC--ccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 55555554 244778899999998888 88888899988886542 3335677777777777789999999998887
Q ss_pred CC--ChHHHHHHHHHHHhCCC---------HHHHHHHHhcC--CC-CCHhHHHHHH---HHHHHcCChH------HHHHH
Q 010496 146 VK--SSFTWNAMIDGYMRRGD---------IESAVRMFDEM--PV-RDAISWTALL---NGFVKRGYFE------EALEC 202 (509)
Q Consensus 146 ~~--~~~~~~~l~~~~~~~~~---------~~~A~~~~~~~--~~-~~~~~~~~li---~~~~~~~~~~------~A~~~ 202 (509)
.. +...|...+..-.+.+. +-+|.++.-.. -+ .....|+..+ ...-..|.|+ ...+.
T Consensus 104 ~k~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~ 183 (660)
T COG5107 104 KKSLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNG 183 (660)
T ss_pred hhhccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence 54 67778777776555432 22333322211 11 2333344333 3333445554 34445
Q ss_pred HHHHHHcCCCCCHhH------HHHHHHH-----HH--ccCCHHHHHHHHHHHHHc--CC---------------------
Q 010496 203 FREMQISGVEPDYVT------IISVLNA-----CA--NVGTLGIGLWIHRYVLKQ--DF--------------------- 246 (509)
Q Consensus 203 ~~~m~~~~~~p~~~~------~~~l~~~-----~~--~~~~~~~a~~~~~~~~~~--~~--------------------- 246 (509)
+.+|....+..=... |..=+.- +. ...-+-.|.+.++++... |+
T Consensus 184 Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~ 263 (660)
T COG5107 184 YMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSN 263 (660)
T ss_pred HHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccch
Confidence 555544211100001 1000000 00 000122333333333210 11
Q ss_pred -----------------------------------CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHH
Q 010496 247 -----------------------------------KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGF 291 (509)
Q Consensus 247 -----------------------------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~ 291 (509)
+....+|.-.-..+...++-+.|+...++..+-.+..--.+...|
T Consensus 264 WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~lse~y 343 (660)
T COG5107 264 WLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLSEYY 343 (660)
T ss_pred hhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHHHHH
Confidence 011111111122223345666666666654432221111111122
Q ss_pred HhCCChHHHHHHHHHHHH--------------CCC---------------CCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 010496 292 AVNGFVGEALEYFNSMQK--------------EGF---------------KPDGVSFTGALTACSHAGLIEDGLRYFDIM 342 (509)
Q Consensus 292 ~~~~~~~~A~~~~~~m~~--------------~g~---------------~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 342 (509)
...++.+.....|++... .+. .--...|...+++..+..-.+.|..+|-++
T Consensus 344 el~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~ 423 (660)
T COG5107 344 ELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKL 423 (660)
T ss_pred hhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 222222222222221110 011 111234566677777778899999999999
Q ss_pred HHhcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--
Q 010496 343 KKIYR-VSPRIEHYGCIVDLYSRAGRLEDALNVVEN-MPMKPNEVVL-GSLLAACRTKGDIILAERLMKYLVDLDPGV-- 417 (509)
Q Consensus 343 ~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-~~~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-- 417 (509)
.+ .+ +.+++.++++++..++ .|++.-|..+|+- |..-||...| ...+.-+...++-+.|..+|+..++.-.+.
T Consensus 424 rk-~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~~q~ 501 (660)
T COG5107 424 RK-EGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEKTQL 501 (660)
T ss_pred hc-cCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHhhh
Confidence 94 45 5678888899887665 5788889999976 4555665544 445666778899999999999776643332
Q ss_pred CchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010496 418 DSNYVLLANMYAAVGKWDGAGKIRRTMK 445 (509)
Q Consensus 418 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 445 (509)
...|..++.--.+-|+...+..+=++|.
T Consensus 502 k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 502 KRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred hHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 4568888887788888866665555553
No 244
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=95.92 E-value=0.14 Score=39.78 Aligned_cols=80 Identities=9% Similarity=0.133 Sum_probs=40.8
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHH---------------cCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 010496 180 AISWTALLNGFVKRGYFEEALECFREMQI---------------SGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQ 244 (509)
Q Consensus 180 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~---------------~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 244 (509)
..++.+++.++++.|+.+....+++..-. ....|+..+..+++.+++..|++..|.++.+...+.
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34555566666666666665555544311 123455555555555555555555555555554433
Q ss_pred -CCCCcHhHHHHHHHH
Q 010496 245 -DFKDNVKVCNTLIDL 259 (509)
Q Consensus 245 -~~~~~~~~~~~l~~~ 259 (509)
+++.+..+|..|++-
T Consensus 82 Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEW 97 (126)
T ss_pred cCCCCCHHHHHHHHHH
Confidence 344444555554443
No 245
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.88 E-value=1.2 Score=39.61 Aligned_cols=146 Identities=12% Similarity=0.051 Sum_probs=81.9
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 010496 290 GFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLE 369 (509)
Q Consensus 290 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 369 (509)
.....|++.+|..+|......... +......+..++...|+.+.|..++..+-... -.........-+..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~-~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQA-QDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccc-hhhHHHHHHHHHHHHHHHhcCC
Confidence 445567777777777776664222 33445556667777777777777777665211 1111111122334444444444
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCCchHHHHHHHHHHcCCchHH
Q 010496 370 DALNVVENMPMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDP--GVDSNYVLLANMYAAVGKWDGA 437 (509)
Q Consensus 370 ~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A 437 (509)
+...+-.+..-.| |...-..+...+...|+.+.|.+.+-.+++.+- .+...-..++..+.-.|.-+.+
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 4444444443445 455566666777777777777776666665433 3566667777776666644443
No 246
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.79 E-value=1.2 Score=38.77 Aligned_cols=194 Identities=18% Similarity=0.146 Sum_probs=86.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC-----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-H
Q 010496 252 VCNTLIDLYSRCGCIEFARQVFQRMHK-----RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALT-A 325 (509)
Q Consensus 252 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~-~ 325 (509)
.+......+...+++..+...+..... .....+......+...+.+..+...+.........+. ........ .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHH
Confidence 333444444444444444444443321 1223333334444444444555555554444322211 11111111 3
Q ss_pred HhccCCHHHHHHHHHHhHHhcCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCH
Q 010496 326 CSHAGLIEDGLRYFDIMKKIYRV--SPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN--EVVLGSLLAACRTKGDI 400 (509)
Q Consensus 326 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~ 400 (509)
+...|+++.+...+.+... ... ......+......+...++.+.+...+... ...++ ...+..+...+...+++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 140 LYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence 4455555555555555531 110 011222223333344555555555555554 22222 34555555555555566
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 401 ILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+.+...+.......+.....+..+...+...+.++++...+.+....
T Consensus 219 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 219 EEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666655553334444444444455566666665555443
No 247
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.73 E-value=0.19 Score=45.52 Aligned_cols=223 Identities=13% Similarity=0.062 Sum_probs=101.0
Q ss_pred HHHcCChHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCc---HhHHHHHHHHHHh
Q 010496 190 FVKRGYFEEALECFREMQISG--VEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQ--DFKDN---VKVCNTLIDLYSR 262 (509)
Q Consensus 190 ~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~ 262 (509)
+....+.++|+..+.+-..+- ...--.+|..+..+.++.|.+++++..--.-++. ..... -..|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777777666655431 1112345556666677777766665443222211 00111 1233444444444
Q ss_pred cCCHHHHHHHHHhccC-C-------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhcc
Q 010496 263 CGCIEFARQVFQRMHK-R-------TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPD-----GVSFTGALTACSHA 329 (509)
Q Consensus 263 ~g~~~~a~~~~~~~~~-~-------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~ 329 (509)
..++.+++.+-..-.. | .-.....+..++...+.++++++.|+...+.-...+ ...+..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 4444444444332210 0 112333455555556666666666666554211111 13455555556666
Q ss_pred CCHHHHHHHHHHhHH---hcCCCCCHHHHHH-----HHHHHHhcCChHHHHHHHHhC-------CCCC-CHHHHHHHHHH
Q 010496 330 GLIEDGLRYFDIMKK---IYRVSPRIEHYGC-----IVDLYSRAGRLEDALNVVENM-------PMKP-NEVVLGSLLAA 393 (509)
Q Consensus 330 ~~~~~a~~~~~~~~~---~~~~~~~~~~~~~-----li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~ 393 (509)
.++++|.-+..+..+ ..++..-...|.. +.-++...|+.-.|.+.-++. +.++ .......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 666666655544332 2222211111221 223344455554444444332 2222 12244445555
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 010496 394 CRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 394 ~~~~g~~~~a~~~~~~~~~ 412 (509)
|...|+.+.|..-|+.+..
T Consensus 256 yR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHhcccHhHHHHHHHHHHH
Confidence 6666666666666665544
No 248
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.71 E-value=0.16 Score=38.77 Aligned_cols=89 Identities=20% Similarity=0.203 Sum_probs=66.1
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-c---hHHHHHHHHHHcCCc
Q 010496 361 LYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD-S---NYVLLANMYAAVGKW 434 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~---~~~~l~~~~~~~g~~ 434 (509)
++...|+.+.|++.|.+. .+-| +...||.-..++.-+|+.++|+.-+++++++..+.. . .|..-+..|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 567778888888888765 3444 567888888888888888888888888888543322 2 366666778888888
Q ss_pred hHHHHHHHHHHhCCC
Q 010496 435 DGAGKIRRTMKGRGI 449 (509)
Q Consensus 435 ~~A~~~~~~m~~~~~ 449 (509)
+.|..-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888888777663
No 249
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.69 E-value=1.6 Score=39.63 Aligned_cols=60 Identities=15% Similarity=0.045 Sum_probs=30.7
Q ss_pred HHHHHHHHHHccCCHH---HHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 010496 217 TIISVLNACANVGTLG---IGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH 277 (509)
Q Consensus 217 ~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 277 (509)
++..++.++...+..+ +|..+++.+.... +-...++..-++.+.+.++.+.+.+.+.+|.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence 3445556665555543 3344444443322 2234444445555555666666666666665
No 250
>PRK11906 transcriptional regulator; Provisional
Probab=95.68 E-value=0.29 Score=46.44 Aligned_cols=142 Identities=10% Similarity=0.021 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHhcc---------CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc
Q 010496 297 VGEALEYFNSMQK-EGFKPDG-VSFTGALTACSHA---------GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRA 365 (509)
Q Consensus 297 ~~~A~~~~~~m~~-~g~~p~~-~~~~~li~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 365 (509)
.+.|+.+|.+.+. ....|+- ..|..+..++... ....+|.++-++..+ --+-|......+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhh
Confidence 4567777777762 1234443 3444444433221 123344455555552 1123455555555555666
Q ss_pred CChHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch--HHHHHHHHHHcCCchHHHHHH
Q 010496 366 GRLEDALNVVENM-PMKPNE-VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSN--YVLLANMYAAVGKWDGAGKIR 441 (509)
Q Consensus 366 g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~ 441 (509)
++++.|..+|++. .+.||. .+|......+.-.|+.++|.+.+++++++.|....+ ....+..|+.. ..++|+++|
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 6677777777766 455653 355555555666777777777777777777663222 22223344433 455566655
No 251
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=95.67 E-value=2 Score=40.58 Aligned_cols=149 Identities=13% Similarity=-0.004 Sum_probs=81.9
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC--CHHH
Q 010496 280 TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKP---DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP--RIEH 354 (509)
Q Consensus 280 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~ 354 (509)
...+|..++..+.+.|.++.|...+.++...+... .+.....-++.+...|+..+|+..++...+ ..... +...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~-~~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK-CRLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH-HHhhhcccccc
Confidence 44577788888888888888888888887643211 223333344556677888888888887774 11111 1111
Q ss_pred HHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 010496 355 YGCIVDLYSRAGRLEDALNV-VENMPMKPNEVVLGSLLAACRTK------GDIILAERLMKYLVDLDPGVDSNYVLLANM 427 (509)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 427 (509)
...+...+.. ..+..... ........-...+..+...+... +..+++...|..+.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111000 00000000 00000000122344444444444 788999999999999999877788887777
Q ss_pred HHHc
Q 010496 428 YAAV 431 (509)
Q Consensus 428 ~~~~ 431 (509)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6543
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.65 E-value=0.54 Score=36.97 Aligned_cols=19 Identities=26% Similarity=0.130 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhcCCCCC
Q 010496 400 IILAERLMKYLVDLDPGVD 418 (509)
Q Consensus 400 ~~~a~~~~~~~~~~~~~~~ 418 (509)
...|..-|+.+++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5677788888888777653
No 253
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.61 E-value=0.73 Score=44.62 Aligned_cols=134 Identities=16% Similarity=0.209 Sum_probs=82.5
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChH
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFE 197 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 197 (509)
..-.+.++..+.+.|..+.|+++... + ..-.....+.|+++.|.++.++.. +...|..|.....+.|+++
T Consensus 295 ~~~~~~i~~fL~~~G~~e~AL~~~~D-----~---~~rFeLAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~ 364 (443)
T PF04053_consen 295 KDQGQSIARFLEKKGYPELALQFVTD-----P---DHRFELALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIE 364 (443)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHSS------H---HHHHHHHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHhhcCC-----h---HHHhHHHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHH
Confidence 33466677777777777777766432 1 233445566777777777776654 5667777888888888888
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010496 198 EALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRM 276 (509)
Q Consensus 198 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (509)
-|.+.|.+... +..|+-.|.-.|+.+...++.......| . ++....++.-.|+.++..+++.+.
T Consensus 365 lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~-~-----~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 365 LAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG-D-----INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc-C-----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 88777766542 4455556667777777777776666655 1 344444555567777766666544
No 254
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.58 E-value=1.2 Score=43.72 Aligned_cols=160 Identities=14% Similarity=0.073 Sum_probs=92.3
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHh----ccCCHHHHHHHHHHhHHhcCCCCCHH
Q 010496 284 WNSIIVGFAVNGFVGEALEYFNSMQKEG-FKPDG-----VSFTGALTACS----HAGLIEDGLRYFDIMKKIYRVSPRIE 353 (509)
Q Consensus 284 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~-----~~~~~li~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~ 353 (509)
...+++...-.|+-+.+++.+.+..+.+ +.-.. ..|..++..++ .....+.|.+++..+.+.+ |+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y---P~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY---PNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC---CCcH
Confidence 3344444445566666666665544421 11111 12233333222 2456777888888887432 4444
Q ss_pred HHH-HHHHHHHhcCChHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH-HH
Q 010496 354 HYG-CIVDLYSRAGRLEDALNVVENMPM-K-----PNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVL-LA 425 (509)
Q Consensus 354 ~~~-~li~~~~~~g~~~~A~~~~~~~~~-~-----p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-l~ 425 (509)
.|. .-.+.+...|++++|++.|++... + .....+--+...+....++++|.+.+..+.+...-....|.. .+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 333 334556677888888888886521 1 122344555667778888888888888888866554444443 34
Q ss_pred HHHHHcCCc-------hHHHHHHHHHHh
Q 010496 426 NMYAAVGKW-------DGAGKIRRTMKG 446 (509)
Q Consensus 426 ~~~~~~g~~-------~~A~~~~~~m~~ 446 (509)
.++...|+. ++|.++|+++..
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 455667777 788888877654
No 255
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.43 E-value=0.23 Score=43.41 Aligned_cols=100 Identities=21% Similarity=0.235 Sum_probs=49.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-HHHHHHHH
Q 010496 318 SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM----PMKPN-EVVLGSLL 391 (509)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-~~~~~~l~ 391 (509)
.|+.-+. +.+.|++..|...|....+.+.-.+ ....+..|..++...|++++|..+|..+ +..|- +..+..|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 3444443 3344556666666666664221111 1333444555555555555555555444 12221 23444555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010496 392 AACRTKGDIILAERLMKYLVDLDPGVD 418 (509)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~~~~~~~~~~ 418 (509)
....+.|+.++|...|+++.+..|..+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 555556666666666666666555543
No 256
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=95.34 E-value=0.49 Score=45.76 Aligned_cols=158 Identities=16% Similarity=0.148 Sum_probs=76.4
Q ss_pred HHHHcCChHHHHHHHHH--HHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 010496 189 GFVKRGYFEEALECFRE--MQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCI 266 (509)
Q Consensus 189 ~~~~~~~~~~A~~~~~~--m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 266 (509)
...-.++++++.++.+. +.. .+ .......++..+.+.|-.+.|+++...-. .-.+...+.|++
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 34445666665555431 111 11 13335556666666666666665532211 122445566677
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 010496 267 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIY 346 (509)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 346 (509)
+.|.++.+... +...|..|.......|+++-|++.|++... |..|+-.|.-.|+.+.-.++.+.... .
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~-~ 402 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE-R 402 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH-T
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH-c
Confidence 76666654443 455677777777777777777776665332 23333345555666655555555442 2
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC
Q 010496 347 RVSPRIEHYGCIVDLYSRAGRLEDALNVVENMP 379 (509)
Q Consensus 347 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 379 (509)
|. ++....++.-.|+.++..+++.+.+
T Consensus 403 ~~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 GD------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred cC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 21 3334445555566666666665554
No 257
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=95.30 E-value=0.53 Score=36.12 Aligned_cols=61 Identities=15% Similarity=0.169 Sum_probs=29.2
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 010496 184 TALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQD 245 (509)
Q Consensus 184 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 245 (509)
...+....+.|+-++-.+++..+.+.+ .+++.....+..+|.+.|+..++.+++.++-+.|
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 344445555555555555555554322 4455555555555555555555555555555555
No 258
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.23 E-value=0.25 Score=43.25 Aligned_cols=94 Identities=19% Similarity=0.185 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHH
Q 010496 353 EHYGCIVDLYSRAGRLEDALNVVENM-PMKPN----EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV---DSNYVLL 424 (509)
Q Consensus 353 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l 424 (509)
..|+.-+.. .+.|++..|...|... ..-|+ ...+.-|..++...|++++|..+|..+.+..|+. |..+.-|
T Consensus 143 ~~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 357766654 4667799999999876 22222 2244557899999999999999999999988774 4569999
Q ss_pred HHHHHHcCCchHHHHHHHHHHhC
Q 010496 425 ANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 425 ~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+.+..+.|+.++|...|+++.+.
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999999999999875
No 259
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=95.21 E-value=1.9 Score=37.43 Aligned_cols=221 Identities=19% Similarity=0.109 Sum_probs=139.5
Q ss_pred CChHHHHHHHHHHHHcCCC-CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCcHhHHHHHHHHHHhcCCHHHHHH
Q 010496 194 GYFEEALECFREMQISGVE-PDYVTIISVLNACANVGTLGIGLWIHRYVLKQ-DFKDNVKVCNTLIDLYSRCGCIEFARQ 271 (509)
Q Consensus 194 ~~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 271 (509)
+....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 3444555555555443211 12445555666666677777766666666542 224455566666666677777777777
Q ss_pred HHHhccCC--C-hhhHHHHHH-HHHhCCChHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 010496 272 VFQRMHKR--T-LVSWNSIIV-GFAVNGFVGEALEYFNSMQKEGF--KPDGVSFTGALTACSHAGLIEDGLRYFDIMKKI 345 (509)
Q Consensus 272 ~~~~~~~~--~-~~~~~~l~~-~~~~~~~~~~A~~~~~~m~~~g~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 345 (509)
.+...... + ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+....+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~- 195 (291)
T COG0457 117 LLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK- 195 (291)
T ss_pred HHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh-
Confidence 77766542 1 122333333 67788888888888888755211 11233344444446677888999998888884
Q ss_pred cCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 346 YRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 346 ~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
.... ....+..+...+...++++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....+.
T Consensus 196 -~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 -LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred -hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 2233 3667777888888888899998888776 44454 445555555555777799999999999888776
No 260
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=1.8 Score=37.24 Aligned_cols=27 Identities=4% Similarity=-0.084 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcC
Q 010496 119 MVGTALLDMYAKFGRMDLATVVFDAMR 145 (509)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 145 (509)
..|.....+|-...++++|...+.+..
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~ 58 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKAS 58 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 344445555666666776666555543
No 261
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.03 E-value=2.9 Score=40.14 Aligned_cols=160 Identities=12% Similarity=0.079 Sum_probs=86.6
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 010496 185 ALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG 264 (509)
Q Consensus 185 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 264 (509)
.++.-.-+..+...-+++-++..+ +.|+-.+.-.++ +--......++++++++..+.|- ..+. +..
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~lg-------~s~ 238 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----ASLG-------KSQ 238 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hhhc-------hhh
Confidence 344444556666666666666666 456543322222 22234557888888888877651 0010 000
Q ss_pred CHHHHHHHHHhccCCC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHH
Q 010496 265 CIEFARQVFQRMHKRT----LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKP-DGVSFTGALTACSHAGLIEDGLRYF 339 (509)
Q Consensus 265 ~~~~a~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~ 339 (509)
..+..-..++....++ ..+-..+..++-+.|+.++|++.+++|.+....- +......|+.++...+.+.++..++
T Consensus 239 ~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL 318 (539)
T PF04184_consen 239 FLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALL 318 (539)
T ss_pred hhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHH
Confidence 0000001111122222 2334456666777888888888888887652221 2335567888888888888888888
Q ss_pred HHhHHhcCCCCC-HHHHHHHH
Q 010496 340 DIMKKIYRVSPR-IEHYGCIV 359 (509)
Q Consensus 340 ~~~~~~~~~~~~-~~~~~~li 359 (509)
.+-. +...+.+ ..+|+..+
T Consensus 319 ~kYd-Di~lpkSAti~YTaAL 338 (539)
T PF04184_consen 319 AKYD-DISLPKSATICYTAAL 338 (539)
T ss_pred HHhc-cccCCchHHHHHHHHH
Confidence 8765 2222222 44555544
No 262
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.95 E-value=2.5 Score=37.61 Aligned_cols=116 Identities=12% Similarity=0.069 Sum_probs=70.1
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCh-h---hHHHHHHHHHhCCChHH
Q 010496 224 ACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTL-V---SWNSIIVGFAVNGFVGE 299 (509)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~---~~~~l~~~~~~~~~~~~ 299 (509)
.....|++..|..+|....... +-+...-..++.+|...|+.+.|..++..+..... . ....-+..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 4566778888888888877765 44566677788888888888888888888764311 1 11223344444444444
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 300 ALEYFNSMQKEGFKP-DGVSFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 300 A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
...+-.+.-. .| |...-..+...+...|+.+.|.+.+=.+.
T Consensus 222 ~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 222 IQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4444444333 33 44444556666667777777765554444
No 263
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.93 E-value=0.17 Score=45.04 Aligned_cols=62 Identities=24% Similarity=0.280 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.++..++..+...|+++.+.+.+++++..+|-+...|..++.+|.+.|+...|+..|+++.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 35566677777788888888888888888888888888888888888888888888887765
No 264
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.91 E-value=0.19 Score=41.58 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=68.4
Q ss_pred HHHhcCChHHHHHHHHhC-CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 010496 361 LYSRAGRLEDALNVVENM-PMKPN------EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGK 433 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 433 (509)
-+...|++++|..-|.+. ...|. ...|..-..++.+.+..+.|+.-..++++++|....+...-+.+|-+..+
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 456777888887777665 22221 23455556678889999999999999999999888888888889999999
Q ss_pred chHHHHHHHHHHhCC
Q 010496 434 WDGAGKIRRTMKGRG 448 (509)
Q Consensus 434 ~~~A~~~~~~m~~~~ 448 (509)
+++|++-|+++.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999987753
No 265
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=94.86 E-value=0.31 Score=42.59 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=78.9
Q ss_pred HHHHHHhcc--CCChhhHHHHHHHHHh-----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----------
Q 010496 269 ARQVFQRMH--KRTLVSWNSIIVGFAV-----NGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAG----------- 330 (509)
Q Consensus 269 a~~~~~~~~--~~~~~~~~~l~~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~----------- 330 (509)
....|..+. ++|..+|...+..|.. .+..+=....++.|.+.|+.-|..+|+.|+..+-+..
T Consensus 53 ~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F 132 (406)
T KOG3941|consen 53 VEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVF 132 (406)
T ss_pred hhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHH
Confidence 344555555 5677777777777754 3456666677888889999999999999998765432
Q ss_pred -----CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChH-HHHHHHHhC
Q 010496 331 -----LIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLE-DALNVVENM 378 (509)
Q Consensus 331 -----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-~A~~~~~~~ 378 (509)
+-+-+++++++|. .+|+.||..+-..|+.++.+.+-.- +..++.-.|
T Consensus 133 ~HYP~QQ~C~I~vLeqME-~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 133 LHYPQQQNCAIKVLEQME-WHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hhCchhhhHHHHHHHHHH-HcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 2345789999999 7899999999999999998887643 344444444
No 266
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.70 E-value=5.6 Score=40.38 Aligned_cols=147 Identities=10% Similarity=0.033 Sum_probs=84.8
Q ss_pred HHHHHHcCCChhHHHHHHHHHhhCCCCC---CcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHH
Q 010496 51 SISRHCRSGRIAEAALEFTRMTLHGTNP---NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDM 127 (509)
Q Consensus 51 li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 127 (509)
-|..+.+.+.+++|++.-+.-.. ..| -.......+..+... +++..|....-.|... +...|..-+..
T Consensus 362 hi~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~--~~y~~Aas~~p~m~gn-----~~~eWe~~V~~ 432 (846)
T KOG2066|consen 362 HIDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFE--GKYDEAASLCPKMLGN-----NAAEWELWVFK 432 (846)
T ss_pred hHHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhc--chHHHHHhhhHHHhcc-----hHHHHHHHHHH
Confidence 37778889999999988777654 333 233455566666555 7777777766555433 25566666666
Q ss_pred HHhcCCchHHHHHHHhcCC-CChHHHHHHHHHHHhCCCHHHHHHHHhcCC-------------C-------CCHhHHHHH
Q 010496 128 YAKFGRMDLATVVFDAMRV-KSSFTWNAMIDGYMRRGDIESAVRMFDEMP-------------V-------RDAISWTAL 186 (509)
Q Consensus 128 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------------~-------~~~~~~~~l 186 (509)
+...++......++=.-.. -++..|..++..+.. .+...-.++.++-. + .+...-..|
T Consensus 433 f~e~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~~~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~L 511 (846)
T KOG2066|consen 433 FAELDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SDVKGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVL 511 (846)
T ss_pred hccccccchhhccCCCCCcccCchHHHHHHHHHHH-HHHHHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHH
Confidence 6666665544333222222 256677777777766 33333333332221 0 022233346
Q ss_pred HHHHHHcCChHHHHHHHHHHH
Q 010496 187 LNGFVKRGYFEEALECFREMQ 207 (509)
Q Consensus 187 i~~~~~~~~~~~A~~~~~~m~ 207 (509)
+..|...+++..|+.++-..+
T Consensus 512 a~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 512 AHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHccChHHHHHHHHhcc
Confidence 777777777777777765554
No 267
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.70 E-value=0.077 Score=30.01 Aligned_cols=32 Identities=25% Similarity=0.161 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
.+|..+...+...|++++|+..|+++++.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35666677777777777777777777777664
No 268
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.68 E-value=2.7 Score=36.66 Aligned_cols=58 Identities=17% Similarity=0.227 Sum_probs=46.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCc---hHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 390 LLAACRTKGDIILAERLMKYLVDLDPGVDS---NYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+.+-|.+.|.+..|..-++.+++.-|+.+. .+..+..+|...|-.++|.+.-+-+..+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 345688999999999999999998766433 5777888999999999998887666544
No 269
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=94.67 E-value=0.11 Score=29.23 Aligned_cols=31 Identities=23% Similarity=0.156 Sum_probs=19.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
.+..+...+...|++++|.+.+++++++.|+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 4555666666777777777777777666664
No 270
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=94.58 E-value=0.53 Score=36.27 Aligned_cols=64 Identities=11% Similarity=-0.003 Sum_probs=33.6
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHh-cCCC-CCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 383 NEVVLGSLLAACRTKG---DIILAERLMKYLVD-LDPG-VDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 383 ~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
...+--.+.+++.+.. +..+.+.+++...+ ..|. .......|+.++.+.+++++++++.+.+.+
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 3334444455554443 34445556666654 2232 223445556666666666666666666654
No 271
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.47 E-value=1.2 Score=40.60 Aligned_cols=220 Identities=14% Similarity=0.131 Sum_probs=141.2
Q ss_pred HHhCCCHHHHHHHHhcCCCC------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCC---HhHHHHHHHHHHc
Q 010496 159 YMRRGDIESAVRMFDEMPVR------DAISWTALLNGFVKRGYFEEALECFREMQISG--VEPD---YVTIISVLNACAN 227 (509)
Q Consensus 159 ~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p~---~~~~~~l~~~~~~ 227 (509)
+....+.++|+..+.....+ --.++..+..+.+..|.+++++..--.-...- .... -..|..+.+++.+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888766544 13356667778888888888776532221110 1111 2345555566666
Q ss_pred cCCHHHHHHHHHHHHHc-CCC---CcHhHHHHHHHHHHhcCCHHHHHHHHHhccC-----C----ChhhHHHHHHHHHhC
Q 010496 228 VGTLGIGLWIHRYVLKQ-DFK---DNVKVCNTLIDLYSRCGCIEFARQVFQRMHK-----R----TLVSWNSIIVGFAVN 294 (509)
Q Consensus 228 ~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~ 294 (509)
.-++.+++.+-..-... |.. ........+..++...+.++++++.|+...+ . ...++-.+.+.|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 66666666665554432 211 1234556678888888899999999988652 1 335789999999999
Q ss_pred CChHHHHHHHHHHHH----CCCCCCHHHHHH-----HHHHHhccCCHHHHHHHHHHhHHh---cCCCC-CHHHHHHHHHH
Q 010496 295 GFVGEALEYFNSMQK----EGFKPDGVSFTG-----ALTACSHAGLIEDGLRYFDIMKKI---YRVSP-RIEHYGCIVDL 361 (509)
Q Consensus 295 ~~~~~A~~~~~~m~~----~g~~p~~~~~~~-----li~~~~~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~~~li~~ 361 (509)
.++++|.-+..+..+ .++.--..-|.. +.-++...|....|.+..++..+. .|..+ .......+.+.
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 999999988777654 233222222332 334677888888888888877642 23332 23445667888
Q ss_pred HHhcCChHHHHHHHHhC
Q 010496 362 YSRAGRLEDALNVVENM 378 (509)
Q Consensus 362 ~~~~g~~~~A~~~~~~~ 378 (509)
|...|+.+.|+.-++..
T Consensus 256 yR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHhcccHhHHHHHHHHH
Confidence 99999999998888764
No 272
>PRK11906 transcriptional regulator; Provisional
Probab=94.41 E-value=3.8 Score=39.18 Aligned_cols=30 Identities=7% Similarity=-0.075 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHH---HcCCCCcHhHHHHHHHHHH
Q 010496 231 LGIGLWIHRYVL---KQDFKDNVKVCNTLIDLYS 261 (509)
Q Consensus 231 ~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~ 261 (509)
.+.|..+|.+.+ ..+ |.....|..+..++.
T Consensus 274 ~~~Al~lf~ra~~~~~ld-p~~a~a~~~lA~~h~ 306 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQ-TLKTECYCLLAECHM 306 (458)
T ss_pred HHHHHHHHHHHhhcccCC-cccHHHHHHHHHHHH
Confidence 466777777777 332 333555555554443
No 273
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.27 E-value=2.2 Score=33.92 Aligned_cols=83 Identities=16% Similarity=0.134 Sum_probs=39.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHH
Q 010496 220 SVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGE 299 (509)
Q Consensus 220 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 299 (509)
.++..+...+.......+++.+...+ +.+...++.++..|++.+ ..+..+.++. ..+......++..|.+.+.+++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l~~~ 87 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKLYEE 87 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCcHHH
Confidence 34444555555666666666666554 355556666666666542 2333333331 1122223334444444444444
Q ss_pred HHHHHHH
Q 010496 300 ALEYFNS 306 (509)
Q Consensus 300 A~~~~~~ 306 (509)
+.-++.+
T Consensus 88 ~~~l~~k 94 (140)
T smart00299 88 AVELYKK 94 (140)
T ss_pred HHHHHHh
Confidence 4444443
No 274
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=94.20 E-value=0.085 Score=29.94 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=23.1
Q ss_pred CCCchHHHHHHHHHHHhcCCchHHHH
Q 010496 114 DRNNVMVGTALLDMYAKFGRMDLATV 139 (509)
Q Consensus 114 ~~~~~~~~~~l~~~~~~~g~~~~A~~ 139 (509)
.|+|+.+|+.|..+|...|++++|++
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 58899999999999999999998863
No 275
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.19 E-value=3.6 Score=35.97 Aligned_cols=56 Identities=13% Similarity=0.184 Sum_probs=33.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 287 IIVGFAVNGFVGEALEYFNSMQKEGFKPDG---VSFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 287 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
+..-|.+.|.+..|..-+++|++. .+-+. ..+-.+..+|...|..++|.+.-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 344566777777777777777765 22222 234445556667777777666555544
No 276
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.12 E-value=6.4 Score=40.35 Aligned_cols=175 Identities=13% Similarity=0.134 Sum_probs=88.7
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCCCHhH----HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc
Q 010496 152 WNAMIDGYMRRGDIESAVRMFDEMPVRDAIS----WTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACAN 227 (509)
Q Consensus 152 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 227 (509)
...-++.+.+...++-|..+-+.-..+ ..+ ...-..-+.+.|++++|...|-+-... +.|. .++.-+..
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk~~~~d-~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd 409 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAKSQHLD-EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD 409 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence 334455556666666666665543322 222 122233345566777776666554432 2222 22334444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChh--hHHHHHHHHHhCCChHHHHHHHH
Q 010496 228 VGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLV--SWNSIIVGFAVNGFVGEALEYFN 305 (509)
Q Consensus 228 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~ 305 (509)
..+...-..+++.+.+.|+ .+...-..|+.+|.+.++.++-.++.+... .... -....+..+.+.+-.++|..+-.
T Consensus 410 aq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~ 487 (933)
T KOG2114|consen 410 AQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLAT 487 (933)
T ss_pred HHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHH
Confidence 4455555566666666663 345555666777777777777666666555 2211 13344445555555555554443
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 306 SMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 306 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
+... +......++ -..+++++|.++++.+.
T Consensus 488 k~~~-----he~vl~ill---e~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 488 KFKK-----HEWVLDILL---EDLHNYEEALRYISSLP 517 (933)
T ss_pred Hhcc-----CHHHHHHHH---HHhcCHHHHHHHHhcCC
Confidence 3221 223333332 34566777776665543
No 277
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.97 E-value=7.9 Score=39.16 Aligned_cols=274 Identities=11% Similarity=0.034 Sum_probs=158.0
Q ss_pred HHHHHHHHhcCCCC-CHhHHHHHHHHH-----HHcCChHHHHHHHHHHHH-------cCCCCCHhHHHHHHHHHHccC--
Q 010496 165 IESAVRMFDEMPVR-DAISWTALLNGF-----VKRGYFEEALECFREMQI-------SGVEPDYVTIISVLNACANVG-- 229 (509)
Q Consensus 165 ~~~A~~~~~~~~~~-~~~~~~~li~~~-----~~~~~~~~A~~~~~~m~~-------~~~~p~~~~~~~l~~~~~~~~-- 229 (509)
...|.++++..... +...-..+..+| ....+.+.|+.+|+.+.. .| ......-+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 56788888776554 444444444433 345688999999988876 44 2334555666665532
Q ss_pred ---CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh-cCCHHHHHHHHHhccCC-ChhhHHHHHHHHHh----CCChHHH
Q 010496 230 ---TLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR-CGCIEFARQVFQRMHKR-TLVSWNSIIVGFAV----NGFVGEA 300 (509)
Q Consensus 230 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A 300 (509)
+.+.|..++.+..+.| .|+.......+..... ..+...|.++|....+. .+..+-.+..+|.. ..+...|
T Consensus 305 ~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A 383 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELA 383 (552)
T ss_pred ccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHH
Confidence 6678999999998888 4555444333322222 24577899999887754 33443333333332 3468889
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH---Hh----cCChHHHHH
Q 010496 301 LEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLY---SR----AGRLEDALN 373 (509)
Q Consensus 301 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~---~~----~g~~~~A~~ 373 (509)
..++.+..+.| .|....-...+..+.. +..+.+.-.+..+. ..+.+.....-..+.... .. ..+.+.+..
T Consensus 384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a-~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLA-ELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHH-HhhhhHHhhHHHHHHHhccccccccccccchhHHHH
Confidence 99999988887 3333322333334444 66666666655555 233322111111111111 11 124556666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc-C--CchHHHHHHHHHHh
Q 010496 374 VVENMPMKPNEVVLGSLLAACRTK----GDIILAERLMKYLVDLDPGVDSNYVLLANMYAAV-G--KWDGAGKIRRTMKG 446 (509)
Q Consensus 374 ~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~~~A~~~~~~m~~ 446 (509)
++.+....-+......+...|..- .+++.|...+..+...+ ......++..+-.. | .+..|.+++++..+
T Consensus 461 ~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~~~~~~ 537 (552)
T KOG1550|consen 461 LYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYYDQASE 537 (552)
T ss_pred HHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHHHHHHh
Confidence 666665455666666666554332 35888888888887766 45566666655432 1 16778888877766
Q ss_pred CC
Q 010496 447 RG 448 (509)
Q Consensus 447 ~~ 448 (509)
.+
T Consensus 538 ~~ 539 (552)
T KOG1550|consen 538 ED 539 (552)
T ss_pred cC
Confidence 43
No 278
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.96 E-value=0.75 Score=41.40 Aligned_cols=117 Identities=11% Similarity=-0.019 Sum_probs=93.5
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHH----HHHHHHHHHHhcCCH
Q 010496 327 SHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM--PMKPNEV----VLGSLLAACRTKGDI 400 (509)
Q Consensus 327 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~----~~~~l~~~~~~~g~~ 400 (509)
...|++.+|-..++++.+ ..+.|.-.+...-++|.-.|+.+.-...++++ ...||.. +-..+..++...|-+
T Consensus 114 ~~~g~~h~a~~~wdklL~--d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLD--DYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred hccccccHHHHHHHHHHH--hCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 346788888888999886 55667777777778899999998888888887 3355543 333344566789999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010496 401 ILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMK 445 (509)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 445 (509)
++|++..+++.++++.+.-+...++..+-..|+++++.+...+-.
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~te 236 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTE 236 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcc
Confidence 999999999999999988888889999999999999999887654
No 279
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.95 E-value=4 Score=35.73 Aligned_cols=224 Identities=17% Similarity=0.208 Sum_probs=120.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc---CC--CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc-----CCCCcHhH
Q 010496 183 WTALLNGFVKRGYFEEALECFREMQIS---GV--EPDYVTIISVLNACANVGTLGIGLWIHRYVLKQ-----DFKDNVKV 252 (509)
Q Consensus 183 ~~~li~~~~~~~~~~~A~~~~~~m~~~---~~--~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~ 252 (509)
...++..+.+.|++++..+.|.+|..- .+ .-+....++++...+...+.+....+|+.-++. +-..=-.+
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT 147 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKT 147 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeec
Confidence 344566677777777777777666431 11 123445556666555555555555555543321 00111123
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCC---------------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC-CCCCCH
Q 010496 253 CNTLIDLYSRCGCIEFARQVFQRMHKR---------------TLVSWNSIIVGFAVNGFVGEALEYFNSMQKE-GFKPDG 316 (509)
Q Consensus 253 ~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~-g~~p~~ 316 (509)
-..|...|...+.+.+..++++++... -...|..=|..|....+-..-..+|++.+.. ..-|.+
T Consensus 148 NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHP 227 (440)
T KOG1464|consen 148 NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHP 227 (440)
T ss_pred cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCch
Confidence 345777778888888887777776521 1235667777787777777777788776542 233444
Q ss_pred HHHHHHHHHH-----hccCCHHHHHHHHHHhHHhcCC--CCC-H--HHHHHHHHHHHhcCC----hHHHHHHHHhCCCCC
Q 010496 317 VSFTGALTAC-----SHAGLIEDGLRYFDIMKKIYRV--SPR-I--EHYGCIVDLYSRAGR----LEDALNVVENMPMKP 382 (509)
Q Consensus 317 ~~~~~li~~~-----~~~~~~~~a~~~~~~~~~~~~~--~~~-~--~~~~~li~~~~~~g~----~~~A~~~~~~~~~~p 382 (509)
.... +|+-| .+.|.+++|..-|=++.+.+.- .|. . --|..|..++.+.|- ..+|. -.+-.|
T Consensus 228 lImG-vIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAK----PyKNdP 302 (440)
T KOG1464|consen 228 LIMG-VIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAK----PYKNDP 302 (440)
T ss_pred HHHh-HHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccC----CCCCCH
Confidence 4433 34433 4668888876443333322221 222 2 224455555555541 11110 012335
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 383 NEVVLGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
.......|+.+|. .+++.+-.++++.-..
T Consensus 303 EIlAMTnlv~aYQ-~NdI~eFE~Il~~~~~ 331 (440)
T KOG1464|consen 303 EILAMTNLVAAYQ-NNDIIEFERILKSNRS 331 (440)
T ss_pred HHHHHHHHHHHHh-cccHHHHHHHHHhhhc
Confidence 5567788888774 4566666666555444
No 280
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=93.92 E-value=0.43 Score=30.29 Aligned_cols=51 Identities=16% Similarity=0.148 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHcCc
Q 010496 420 NYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGY 496 (509)
Q Consensus 420 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~ 496 (509)
....++.++.+.|++++|.+..+.+.+. +|.+.+....-+.+.++|+..|.
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 3567888999999999999999999875 67777888888888889988884
No 281
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=93.88 E-value=4.9 Score=41.16 Aligned_cols=49 Identities=22% Similarity=0.131 Sum_probs=36.2
Q ss_pred CCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCC
Q 010496 43 NPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADF 93 (509)
Q Consensus 43 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 93 (509)
.+.-.|- +|-.|.|.|++++|.++....... .......+...+..+...
T Consensus 110 ~~~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 110 NGDPIWA-LIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS 158 (613)
T ss_dssp TTEEHHH-HHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred CCCccHH-HHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence 3444565 788999999999999999666543 566677888889888765
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.84 E-value=0.13 Score=29.65 Aligned_cols=26 Identities=15% Similarity=0.185 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHH
Q 010496 420 NYVLLANMYAAVGKWDGAGKIRRTMK 445 (509)
Q Consensus 420 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 445 (509)
+|..|+.+|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 36778888888888888888888854
No 283
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.83 E-value=0.19 Score=30.51 Aligned_cols=27 Identities=26% Similarity=0.415 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQI 208 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 208 (509)
++..+...|...|++++|.++|++..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344445555555555555555555554
No 284
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.72 E-value=5.9 Score=37.36 Aligned_cols=67 Identities=18% Similarity=0.187 Sum_probs=54.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010496 383 NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG----VDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 449 (509)
...+|..++..+.+.|.++.|...+.++....+. .+.+...-+..+...|+..+|+..++......+
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 4457888889999999999999999998886532 456677788899999999999999988887433
No 285
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=93.70 E-value=2.9 Score=33.24 Aligned_cols=127 Identities=11% Similarity=0.084 Sum_probs=69.9
Q ss_pred chHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 010496 47 QWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLD 126 (509)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 126 (509)
.-..++..+...+.+..+...++.+...+ ..+...++.++..+++. . ....... +... .+ ..-....++
T Consensus 9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~--~-~~~ll~~---l~~~---~~-~yd~~~~~~ 77 (140)
T smart00299 9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY--D-PQKEIER---LDNK---SN-HYDIEKVGK 77 (140)
T ss_pred CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH--C-HHHHHHH---HHhc---cc-cCCHHHHHH
Confidence 34567888887888888888888888766 35666777777777654 2 1222222 2211 11 233344566
Q ss_pred HHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhC-CCHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 010496 127 MYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRR-GDIESAVRMFDEMPVRDAISWTALLNGFV 191 (509)
Q Consensus 127 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 191 (509)
.|.+.+-++++.-++.++.. +...+..+... ++++.|.+++.+. .++..|..++..+.
T Consensus 78 ~c~~~~l~~~~~~l~~k~~~-----~~~Al~~~l~~~~d~~~a~~~~~~~--~~~~lw~~~~~~~l 136 (140)
T smart00299 78 LCEKAKLYEEAVELYKKDGN-----FKDAIVTLIEHLGNYEKAIEYFVKQ--NNPELWAEVLKALL 136 (140)
T ss_pred HHHHcCcHHHHHHHHHhhcC-----HHHHHHHHHHcccCHHHHHHHHHhC--CCHHHHHHHHHHHH
Confidence 66666666666666655532 22223333333 5566666665542 24445555554443
No 286
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.36 E-value=3.7 Score=33.42 Aligned_cols=119 Identities=13% Similarity=0.039 Sum_probs=61.8
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHH-----HHHHHhcCC
Q 010496 327 SHAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDALNVVENMP-MKPNEVVLGSL-----LAACRTKGD 399 (509)
Q Consensus 327 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l-----~~~~~~~g~ 399 (509)
.+.+..++|..-|..+.+ .|...- +-............|+...|...|+++. ..|-+....-+ ...+...|.
T Consensus 69 A~~~k~d~Alaaf~~lek-tg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 69 AQENKTDDALAAFTDLEK-TGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHcCCchHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 344556666666666652 232211 1111112233455666677777776662 22222222111 123456677
Q ss_pred HHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 400 IILAERLMKYLVDLD-PGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 400 ~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
++....-.+.+..-+ |-....-..|+.+-.+.|++.+|.+.|+.+..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 777766665543321 11223455677777788888888888877755
No 287
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.13 E-value=4.1 Score=33.30 Aligned_cols=128 Identities=13% Similarity=0.152 Sum_probs=67.4
Q ss_pred HHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCC--CHHHHHHHHhcCCCCCHhHHH
Q 010496 107 LVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRG--DIESAVRMFDEMPVRDAISWT 184 (509)
Q Consensus 107 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~ 184 (509)
.+.+.++.|+ ...+..+++.+.+.|++....+++..-.-+|.......+-.+.... -..-|.+++.++. ..+.
T Consensus 19 Sl~~~~i~~~-~~L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~----~~~~ 93 (167)
T PF07035_consen 19 SLNQHNIPVQ-HELYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG----TAYE 93 (167)
T ss_pred HHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh----hhHH
Confidence 3344555555 6666777777777776666666665544444333333222222211 1344555555543 2345
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 010496 185 ALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLK 243 (509)
Q Consensus 185 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 243 (509)
.++..+...|++-+|+++.+..... +......++.+..+.+|...-..+++-..+
T Consensus 94 ~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 94 EIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5666777777777777776654221 112223455666666665555555554444
No 288
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.10 E-value=1.8 Score=33.21 Aligned_cols=53 Identities=17% Similarity=0.029 Sum_probs=23.5
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 010496 190 FVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLK 243 (509)
Q Consensus 190 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 243 (509)
....|+.+.|++.|.+.... .+-....|+.-..++.-.|+.++|+.=+++.++
T Consensus 53 laE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~Ale 105 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALE 105 (175)
T ss_pred HHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence 34444444444444444432 122344444444444444444444444444443
No 289
>PRK09687 putative lyase; Provisional
Probab=92.99 E-value=6.9 Score=35.49 Aligned_cols=50 Identities=12% Similarity=0.033 Sum_probs=20.0
Q ss_pred CCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCC
Q 010496 146 VKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGY 195 (509)
Q Consensus 146 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 195 (509)
.+|..+....+.++...|..+-...+...+..+|+..-...+.++.+.|.
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~ 83 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGM 83 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 33444444444444444432222222222233344444444444444444
No 290
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.58 E-value=14 Score=38.05 Aligned_cols=135 Identities=16% Similarity=0.139 Sum_probs=65.0
Q ss_pred cCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchH
Q 010496 57 RSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDL 136 (509)
Q Consensus 57 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 136 (509)
+.|++++|...|-+-... +.|. .++.-+... .....-...++.+.+.|+.- ..--..|+.+|.+.++.++
T Consensus 380 ~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLda--q~IknLt~YLe~L~~~gla~--~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 380 GKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDA--QRIKNLTSYLEALHKKGLAN--SDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred hcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCH--HHHHHHHHHHHHHHHccccc--chhHHHHHHHHHHhcchHH
Confidence 455566655555554431 2221 123333222 33333344444555555443 2333556777777777776
Q ss_pred HHHHHHhcCCCChH--HHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHH
Q 010496 137 ATVVFDAMRVKSSF--TWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREM 206 (509)
Q Consensus 137 A~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m 206 (509)
-.+..+... .... -....+..+.+.+-.++|.-+-..... +... +-..+-..+++++|++++..+
T Consensus 450 L~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~-he~v---l~ille~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 450 LTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLATKFKK-HEWV---LDILLEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHHHHhcc-CHHH---HHHHHHHhcCHHHHHHHHhcC
Confidence 666665554 2111 133445555555555555555443332 2222 222334456677777766554
No 291
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=92.55 E-value=5.9 Score=33.63 Aligned_cols=162 Identities=15% Similarity=0.105 Sum_probs=72.3
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 010496 281 LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVD 360 (509)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 360 (509)
+.+||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++.-|.+-+-..-+...-.|-...|..++.
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E 177 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE 177 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 3456666666666666666666666666543222222222222 233346666666555554432222232223322221
Q ss_pred HHHhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHHHHHHHHHHcC
Q 010496 361 LYSRAGRLEDALNVV-ENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV-------DSNYVLLANMYAAVG 432 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~-~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g 432 (509)
..-++.+|..-+ ++.. ..|..-|...+-.+. .|++. ...+++++..-..++ ..+|..|+.-|...|
T Consensus 178 ---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~y-LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G 251 (297)
T COG4785 178 ---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFY-LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLG 251 (297)
T ss_pred ---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHH-Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhccc
Confidence 222444444333 2221 122222322222211 11111 112222222211111 236777777777888
Q ss_pred CchHHHHHHHHHHhCCC
Q 010496 433 KWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 433 ~~~~A~~~~~~m~~~~~ 449 (509)
+.++|..+|+-.+..++
T Consensus 252 ~~~~A~~LfKLaiannV 268 (297)
T COG4785 252 DLDEATALFKLAVANNV 268 (297)
T ss_pred cHHHHHHHHHHHHHHhH
Confidence 88888888877666543
No 292
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=92.54 E-value=0.3 Score=28.07 Aligned_cols=27 Identities=22% Similarity=0.185 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
+|..|...|.+.|++++|++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788899999999999999998554
No 293
>PRK09687 putative lyase; Provisional
Probab=92.49 E-value=8.1 Score=35.04 Aligned_cols=212 Identities=13% Similarity=0.048 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCH----HHHHHHHhcC--CCCCHhHHHHHHHHHH
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDI----ESAVRMFDEM--PVRDAISWTALLNGFV 191 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A~~~~~~~--~~~~~~~~~~li~~~~ 191 (509)
..+....+..+...|..+....+..-+..+|+..-...+.++++.|+. +++...+..+ ..++...-...+.++.
T Consensus 37 ~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG 116 (280)
T PRK09687 37 SLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALEDKSACVRASAINATG 116 (280)
T ss_pred HHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCHHHHHHHHHHHh
Confidence 445555555555555433333333333344555555555555555542 3455555443 3334444444444444
Q ss_pred HcCCh-----HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC-C
Q 010496 192 KRGYF-----EEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG-C 265 (509)
Q Consensus 192 ~~~~~-----~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~ 265 (509)
..+.. ..+.+.+..... .++...-...+.++.+.++ ..+...+-.+.+. ++..+-...+.++.+.+ +
T Consensus 117 ~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~ 189 (280)
T PRK09687 117 HRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYD 189 (280)
T ss_pred cccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCC
Confidence 33211 122232222222 2233333444455555544 2344444444432 23333333444444332 1
Q ss_pred HHHHHHH-HHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 266 IEFARQV-FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 266 ~~~a~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
...+... ...+..++..+....+.++.+.|+ ..|+..+-+..+.+ + .....+.++...|.. +|...+..+.
T Consensus 190 ~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~ALg~ig~~-~a~p~L~~l~ 261 (280)
T PRK09687 190 NPDIREAFVAMLQDKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEAAGELGDK-TLLPVLDTLL 261 (280)
T ss_pred CHHHHHHHHHHhcCCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHHHHhcCCH-hHHHHHHHHH
Confidence 1222222 222334444555555555555554 23444444433321 1 122344455555553 3555555544
No 294
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.40 E-value=3.5 Score=33.55 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=8.3
Q ss_pred HHHhcCCHHHHHHHHHHHH
Q 010496 393 ACRTKGDIILAERLMKYLV 411 (509)
Q Consensus 393 ~~~~~g~~~~a~~~~~~~~ 411 (509)
+-.+.|++..|...|..+.
T Consensus 176 Aa~kagd~a~A~~~F~qia 194 (221)
T COG4649 176 AAYKAGDFAKAKSWFVQIA 194 (221)
T ss_pred HHHhccchHHHHHHHHHHH
Confidence 3334444444444444443
No 295
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.26 E-value=1.1 Score=35.34 Aligned_cols=69 Identities=20% Similarity=0.160 Sum_probs=31.7
Q ss_pred cCChHHHHHHHHhC-CCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 010496 365 AGRLEDALNVVENM-PMKPNEVVLGS-LLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGK 433 (509)
Q Consensus 365 ~g~~~~A~~~~~~~-~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 433 (509)
.++++++..+++.+ .++|+..-... -...+...|++.+|.++++.+.+..+..+..-..++.++.-.|+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 55556666665555 23443221111 12234555666666666666555444433333333333333343
No 296
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.24 E-value=6.9 Score=33.67 Aligned_cols=55 Identities=4% Similarity=-0.136 Sum_probs=32.1
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCch-------HHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 392 AACRTKGDIILAERLMKYLVDLDPGVDSN-------YVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.--...+++.+|+.+|++......+++.. +..-+.++.-..+.-.+...+++-.+
T Consensus 162 ~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 162 QYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 33456789999999999998876665432 22222333333444445555554443
No 297
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=92.19 E-value=1.4 Score=32.15 Aligned_cols=63 Identities=17% Similarity=0.148 Sum_probs=46.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 010496 297 VGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDL 361 (509)
Q Consensus 297 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 361 (509)
.-+..+-++.+....+.|++....+.+++|.+.+++..|.++|+-++.+.+...+ .|..+++-
T Consensus 26 ~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~--~Y~~~lqE 88 (108)
T PF02284_consen 26 GWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE--IYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT--HHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH--HHHHHHHH
Confidence 4466777777777888999999999999999999999999999999876654433 67766643
No 298
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.05 E-value=1.3 Score=35.62 Aligned_cols=72 Identities=26% Similarity=0.266 Sum_probs=45.8
Q ss_pred HHhcCChHHHHHHHHhC-CCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 010496 362 YSRAGRLEDALNVVENM-PMKPNEVVLGSL-LAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGK 433 (509)
Q Consensus 362 ~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 433 (509)
-.+.++.+++..++..+ .++|.......+ ...+...|++.+|.++++.+.+..|..+..-..++.++...|+
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD 93 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence 34567888888888777 356654433222 3346778888888888888777666655555555555555554
No 299
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.97 E-value=4.6 Score=33.65 Aligned_cols=60 Identities=12% Similarity=0.109 Sum_probs=28.5
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 284 WNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDG--VSFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 284 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
+..+...|++.|+.+.|++.|.++.+....+.. ..+..+|......+++..+...+.++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 344444555555555555555555444333222 233344444555555555555555444
No 300
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.90 E-value=1.7 Score=31.39 Aligned_cols=63 Identities=19% Similarity=0.187 Sum_probs=49.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 010496 296 FVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVD 360 (509)
Q Consensus 296 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 360 (509)
+.-++.+-++.+....+.|++....+.+++|.+.+++..|.++|+-++.+.+. +...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 45567777888888888999999999999999999999999999988854443 4446666654
No 301
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.76 E-value=6.9 Score=32.66 Aligned_cols=127 Identities=8% Similarity=-0.013 Sum_probs=72.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHH--HHHHHHHccCCHHHHHHHHHHHHHcCCC--CcHhHHHHHHH
Q 010496 183 WTALLNGFVKRGYFEEALECFREMQISGVEPDYVTII--SVLNACANVGTLGIGLWIHRYVLKQDFK--DNVKVCNTLID 258 (509)
Q Consensus 183 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 258 (509)
|..++.... .+.+ +.....+++...+-......+. .+...+...+++++|...++..+..-.. ....+-..|..
T Consensus 57 Y~~~i~~~~-ak~~-~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLAr 134 (207)
T COG2976 57 YQNAIKAVQ-AKKP-KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLAR 134 (207)
T ss_pred HHHHHHHHh-cCCc-hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHH
Confidence 444444433 3333 4455555555532111122222 2344567778888888777776643111 11223334566
Q ss_pred HHHhcCCHHHHHHHHHhccCCChhh--HHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 010496 259 LYSRCGCIEFARQVFQRMHKRTLVS--WNSIIVGFAVNGFVGEALEYFNSMQKEG 311 (509)
Q Consensus 259 ~~~~~g~~~~a~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~m~~~g 311 (509)
.....|.+++|+..++....++-.. ...-...+...|+-++|..-|.+.+..+
T Consensus 135 vq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 135 VQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 7777788888888888777664332 4444567777888888888888877764
No 302
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=91.67 E-value=0.41 Score=26.84 Aligned_cols=30 Identities=20% Similarity=0.181 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVDLDP 415 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 415 (509)
+|..+...+...|++++|.+.|++.++..|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 445555666666666666666666666555
No 303
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=91.36 E-value=3.8 Score=34.17 Aligned_cols=63 Identities=16% Similarity=0.152 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 010496 181 ISWTALLNGFVKRGYFEEALECFREMQISGVEPD--YVTIISVLNACANVGTLGIGLWIHRYVLK 243 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 243 (509)
..+..+...|.+.|+.+.|++.|.++......+. ...+-.+++.....+++..+.....++..
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3556677777777777777777777766543333 23445566666677777777666665554
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.36 E-value=19 Score=36.89 Aligned_cols=30 Identities=17% Similarity=0.279 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCCCh
Q 010496 252 VCNTLIDLYSRCGCIEFARQVFQRMHKRTL 281 (509)
Q Consensus 252 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 281 (509)
.-..|+..|...+++..|+..+-.+.++++
T Consensus 507 L~e~La~LYl~d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 507 LLEVLAHLYLYDNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred HHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence 344488888888888888888887776544
No 305
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.20 E-value=6.9 Score=31.61 Aligned_cols=110 Identities=16% Similarity=0.142 Sum_probs=56.3
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 010496 326 CSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMP-MKPNEVVLGSLLAACRTKGDIILAE 404 (509)
Q Consensus 326 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~ 404 (509)
-.+.++.+++..++..+.-...-.+...++. ...+...|++.+|.++|+++. ..|....-..|+..|....+-..=.
T Consensus 20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HHccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 3456778888888877773222222233333 334667788888888888873 3344444445555555444333333
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHH
Q 010496 405 RLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGK 439 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 439 (509)
..-.++.+.++++ .-..++..+....+...|..
T Consensus 98 ~~A~evle~~~d~--~a~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 98 RYADEVLESGADP--DARALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHhcCCCh--HHHHHHHHHHHhccccchhh
Confidence 4444455544432 22334444444444444333
No 306
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.20 E-value=0.43 Score=42.93 Aligned_cols=94 Identities=13% Similarity=0.074 Sum_probs=70.4
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCH
Q 010496 324 TACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMK-PNEVVLGSLLAACRTKGDI 400 (509)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~g~~ 400 (509)
+-|.+.|.+++|++.|.+.. ...| +.+++..-..+|.+..++..|..-.... .+. .-...|..-+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 45889999999999999887 3445 7888888888999999998887665554 111 1223555555555667899
Q ss_pred HHHHHHHHHHHhcCCCCCch
Q 010496 401 ILAERLMKYLVDLDPGVDSN 420 (509)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~ 420 (509)
.+|.+-++.++++.|.+...
T Consensus 182 ~EAKkD~E~vL~LEP~~~EL 201 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNIEL 201 (536)
T ss_pred HHHHHhHHHHHhhCcccHHH
Confidence 99999999999999985443
No 307
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.04 E-value=8.2 Score=32.22 Aligned_cols=84 Identities=10% Similarity=0.057 Sum_probs=36.2
Q ss_pred HHHHhcCCchHHHHHHHhcCC-CChHHH-----HHHHHHHHhCCCHHHHHHHHhcCCCCCHhH--HHHHHHHHHHcCChH
Q 010496 126 DMYAKFGRMDLATVVFDAMRV-KSSFTW-----NAMIDGYMRRGDIESAVRMFDEMPVRDAIS--WTALLNGFVKRGYFE 197 (509)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~ 197 (509)
..+...|++++|+..++.... +....+ -.|.......|.+|+|+.+++....++-.. ...-.+.+...|+-+
T Consensus 97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~ 176 (207)
T COG2976 97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ 176 (207)
T ss_pred HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence 334445555555555554431 211111 122333444455555555555444442221 222334445555555
Q ss_pred HHHHHHHHHHHc
Q 010496 198 EALECFREMQIS 209 (509)
Q Consensus 198 ~A~~~~~~m~~~ 209 (509)
+|..-|++..+.
T Consensus 177 ~Ar~ay~kAl~~ 188 (207)
T COG2976 177 EARAAYEKALES 188 (207)
T ss_pred HHHHHHHHHHHc
Confidence 555555554443
No 308
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.96 E-value=9.6 Score=32.84 Aligned_cols=70 Identities=17% Similarity=0.282 Sum_probs=39.4
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC---CCCCHHHHH---HHHH---HHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHH
Q 010496 357 CIVDLYSRAGRLEDALNVVENMP---MKPNEVVLG---SLLA---ACRTKGDIILAERLMKYLVDLDPG--VDSNYVLLA 425 (509)
Q Consensus 357 ~li~~~~~~g~~~~A~~~~~~~~---~~p~~~~~~---~l~~---~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 425 (509)
-....-...+++.+|+++|++.. ...+..-|. .++. ++....+.-.+...+++..+.+|. +..-+..|-
T Consensus 159 KvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsREckflk 238 (288)
T KOG1586|consen 159 KVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSRECKFLK 238 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccHHHHHHH
Confidence 33444456788888999888762 222221111 1111 122336777788888888888887 333344443
Q ss_pred H
Q 010496 426 N 426 (509)
Q Consensus 426 ~ 426 (509)
.
T Consensus 239 ~ 239 (288)
T KOG1586|consen 239 D 239 (288)
T ss_pred H
Confidence 3
No 309
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=90.93 E-value=18 Score=35.84 Aligned_cols=126 Identities=11% Similarity=0.067 Sum_probs=88.1
Q ss_pred CcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCC---ChHHHHHH
Q 010496 79 NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVK---SSFTWNAM 155 (509)
Q Consensus 79 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 155 (509)
+...+..++.--... .....++.++..++..- |--...|...+..=.+.|..+.+.++|++-..- +...|...
T Consensus 44 ~f~~wt~li~~~~~~--~~~~~~r~~y~~fL~ky--Pl~~gyW~kfA~~E~klg~~~~s~~Vfergv~aip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSI--EDVDALREVYDIFLSKY--PLCYGYWKKFADYEYKLGNAENSVKVFERGVQAIPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCch--hHHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 445566667655444 55577777777777552 543445556666667889999999999988753 55566655
Q ss_pred HHHHH-hCCCHHHHHHHHhcCCCC------CHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010496 156 IDGYM-RRGDIESAVRMFDEMPVR------DAISWTALLNGFVKRGYFEEALECFREMQI 208 (509)
Q Consensus 156 ~~~~~-~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 208 (509)
+..+. ..|+.+...+.|+....- +...|...|..-..++++.....+++..++
T Consensus 120 ~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 120 LAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 54443 457788888888766532 456677788777888899999999999887
No 310
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=90.85 E-value=5.4 Score=33.36 Aligned_cols=102 Identities=14% Similarity=0.088 Sum_probs=62.4
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 010496 326 CSHAGLIEDGLRYFDIMKKIYRVSPR---IEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKGDI 400 (509)
Q Consensus 326 ~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~ 400 (509)
+...|++++|..-|..+.....-.+. ...|..-..++.+.+.++.|+.-..+. .+.|. ...+..-..+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 45567777777777666642221111 223444445566677777776655443 45553 22344445678888889
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHH
Q 010496 401 ILAERLMKYLVDLDPGVDSNYVLLANM 427 (509)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~~~~l~~~ 427 (509)
++|++-|+++.+.+|....+-...++.
T Consensus 185 eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred HHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 999999999999988866555554443
No 311
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=90.64 E-value=0.39 Score=26.87 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 419 SNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 419 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
..+..++.+|.+.|++++|++.|++..+.
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 46889999999999999999999998764
No 312
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=90.64 E-value=13 Score=33.92 Aligned_cols=126 Identities=13% Similarity=0.162 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh--cC----CHHHHHHHHHhccCC-------ChhhHHHHHHHHHhCCC--
Q 010496 232 GIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR--CG----CIEFARQVFQRMHKR-------TLVSWNSIIVGFAVNGF-- 296 (509)
Q Consensus 232 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~-------~~~~~~~l~~~~~~~~~-- 296 (509)
++...+++.+.+.|+..+..+|-+....... .. ...+|.++|+.|++. +-..+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3444556666666665555544443222222 11 234566666666642 33344444332 2222
Q ss_pred --hHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCC--HHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 010496 297 --VGEALEYFNSMQKEGFKPDGV--SFTGALTACSHAGL--IEDGLRYFDIMKKIYRVSPRIEHYGCIVD 360 (509)
Q Consensus 297 --~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 360 (509)
.+.++.+|+.+.+.|+..+.. ....++..+..... ...+..+++.+. +.++++....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~-~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALK-KNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHH-HcCCccccccccHHHH
Confidence 356777788888777665433 33333332222211 346777788887 5677777666665543
No 313
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=90.32 E-value=3.6 Score=36.79 Aligned_cols=78 Identities=12% Similarity=0.112 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCcHhHHHH
Q 010496 181 ISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLK-----QDFKDNVKVCNT 255 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 255 (509)
.++..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345566667777777777777777777653 34666777777777777777777777766554 466666665554
Q ss_pred HHHH
Q 010496 256 LIDL 259 (509)
Q Consensus 256 l~~~ 259 (509)
..+.
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
No 314
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=89.56 E-value=0.98 Score=25.28 Aligned_cols=28 Identities=29% Similarity=0.433 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010496 181 ISWTALLNGFVKRGYFEEALECFREMQI 208 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~A~~~~~~m~~ 208 (509)
.+|..+..+|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 3556666666677777777777666665
No 315
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=89.56 E-value=15 Score=32.86 Aligned_cols=61 Identities=23% Similarity=0.139 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
+++.....|...|.+.+|.++.++++..+|-+...+..++..+...|+--.|.+.++++.+
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 3344456789999999999999999999999999999999999999998888888887754
No 316
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.08 E-value=4.4 Score=36.42 Aligned_cols=100 Identities=12% Similarity=0.062 Sum_probs=73.6
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-Ch-----hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHH
Q 010496 244 QDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR-TL-----VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGV 317 (509)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~-----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~ 317 (509)
.|.+....+...++..-....+++.+..++-++... +. .+-..++..+ -.=+.++++.++..=+..|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchh
Confidence 455666677777777777778888888888777632 11 1112222222 2346678888888888899999999
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHH
Q 010496 318 SFTGALTACSHAGLIEDGLRYFDIMKK 344 (509)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~~~~ 344 (509)
+++.+++.+.+.+++.+|.++...|..
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 999999999999999999888887764
No 317
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.05 E-value=11 Score=30.80 Aligned_cols=137 Identities=11% Similarity=0.051 Sum_probs=88.1
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhc
Q 010496 65 ALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAM 144 (509)
Q Consensus 65 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 144 (509)
.+.++.+.+.|+.|+...|..++..+.+. +... .+.++...++-+|+..+-..|+..- +....+.++--.|
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~--~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~---~~~~~~~Ql~lDM 84 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRN--GQFS----QLHQLLQYHVIPDSKPLACQLLSLG---NQYPPAYQLGLDM 84 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCHH----HHHHHHhhcccCCcHHHHHHHHHhH---ccChHHHHHHHHH
Confidence 45666677788899988999999998887 6544 3445566777777555544443322 2333344433333
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 010496 145 RVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISG 210 (509)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 210 (509)
..+=...+..++..+...|++-+|+++.+.....+......++.+..+.++...-..+|+-....+
T Consensus 85 LkRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 85 LKRLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred HHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 333223456677788889999999999887655554555667777777777766666666665543
No 318
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.87 E-value=0.61 Score=24.41 Aligned_cols=23 Identities=30% Similarity=0.289 Sum_probs=16.3
Q ss_pred hHHHHHHHHHHcCCchHHHHHHH
Q 010496 420 NYVLLANMYAAVGKWDGAGKIRR 442 (509)
Q Consensus 420 ~~~~l~~~~~~~g~~~~A~~~~~ 442 (509)
....++.++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45567777777777777777664
No 319
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.68 E-value=0.49 Score=37.90 Aligned_cols=85 Identities=15% Similarity=0.126 Sum_probs=48.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 010496 186 LLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGC 265 (509)
Q Consensus 186 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 265 (509)
++..+.+.+.+.....+++.+...+...+....+.++..|++.++.+....+++. .+..-...++..+.+.|.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~l 85 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHGL 85 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTTS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcch
Confidence 4555566667777777777777655445566677777777777666666666551 111222344555555666
Q ss_pred HHHHHHHHHhcc
Q 010496 266 IEFARQVFQRMH 277 (509)
Q Consensus 266 ~~~a~~~~~~~~ 277 (509)
+++|.-++.++.
T Consensus 86 ~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 86 YEEAVYLYSKLG 97 (143)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHHHcc
Confidence 666655555443
No 320
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=88.61 E-value=25 Score=34.20 Aligned_cols=58 Identities=14% Similarity=0.120 Sum_probs=25.9
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 010496 214 DYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQ 274 (509)
Q Consensus 214 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 274 (509)
|.....+++..++....+.-++.+..+|+.-| .+...|..++++|... ..+.-..+++
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWe 122 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWE 122 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHH
Confidence 33344444444444444445555555554443 2334444445555444 2233334444
No 321
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=88.53 E-value=1.6 Score=39.52 Aligned_cols=93 Identities=12% Similarity=0.105 Sum_probs=61.7
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC
Q 010496 288 IVGFAVNGFVGEALEYFNSMQKEGFKP-DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAG 366 (509)
Q Consensus 288 ~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 366 (509)
.+-|.++|.+++|+++|...+.. .| |.+++..-..+|.+...+..|+.-...+.... ..-+..|..-+.+-...|
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--HHHHHHHHHHHHHHHHHh
Confidence 45699999999999999988774 55 88888888889999999998888777766210 011223333333333344
Q ss_pred ChHHHHHHHHhC-CCCCCH
Q 010496 367 RLEDALNVVENM-PMKPNE 384 (509)
Q Consensus 367 ~~~~A~~~~~~~-~~~p~~ 384 (509)
...+|.+-++.. .+.|+.
T Consensus 180 ~~~EAKkD~E~vL~LEP~~ 198 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKN 198 (536)
T ss_pred hHHHHHHhHHHHHhhCccc
Confidence 555555555443 567763
No 322
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=88.42 E-value=42 Score=36.52 Aligned_cols=254 Identities=11% Similarity=-0.038 Sum_probs=156.1
Q ss_pred HHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCc-hHHHHHHHhc
Q 010496 66 LEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRM-DLATVVFDAM 144 (509)
Q Consensus 66 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~ 144 (509)
..+-.++. .+|...-...+..+... +... +...+..... +++ ..+....+.++.+.+.. .....+...+
T Consensus 624 ~~L~~~L~---D~d~~VR~~Av~~L~~~--~~~~-~~~~L~~aL~---D~d-~~VR~~Aa~aL~~l~~~~~~~~~L~~~L 693 (897)
T PRK13800 624 AELAPYLA---DPDPGVRRTAVAVLTET--TPPG-FGPALVAALG---DGA-AAVRRAAAEGLRELVEVLPPAPALRDHL 693 (897)
T ss_pred HHHHHHhc---CCCHHHHHHHHHHHhhh--cchh-HHHHHHHHHc---CCC-HHHHHHHHHHHHHHHhccCchHHHHHHh
Confidence 34444443 56777777777777776 5433 3333333332 244 66667777777666432 2223333444
Q ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 010496 145 RVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224 (509)
Q Consensus 145 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 224 (509)
..+|+.+-...+.++...+..+ ...++..+..+|...-...+.++.+.+..+. +..+.. .++...-...+.+
T Consensus 694 ~~~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l~---D~~~~VR~~aa~a 765 (897)
T PRK13800 694 GSPDPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVES----VAGAAT---DENREVRIAVAKG 765 (897)
T ss_pred cCCCHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHhc---CCCHHHHHHHHHH
Confidence 5567777777777776544221 2345566677788777777888877665432 222332 4566666667777
Q ss_pred HHccCCHHH-HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH-HHHHhccCCChhhHHHHHHHHHhCCChHHHHH
Q 010496 225 CANVGTLGI-GLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFAR-QVFQRMHKRTLVSWNSIIVGFAVNGFVGEALE 302 (509)
Q Consensus 225 ~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 302 (509)
+...+..+. +...+..+.+ .++..+-...+.++...|....+. .+...+..++..+-...+.++...+. .++..
T Consensus 766 L~~~~~~~~~~~~~L~~ll~---D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~ 841 (897)
T PRK13800 766 LATLGAGGAPAGDAVRALTG---DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVP 841 (897)
T ss_pred HHHhccccchhHHHHHHHhc---CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHH
Confidence 777665443 3445555554 356788888899999988866553 34455556777777778888887775 45666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 010496 303 YFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344 (509)
Q Consensus 303 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 344 (509)
.+..+.. .|+...-...+.++.+......+...+..+.+
T Consensus 842 ~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 842 ALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 6666664 56777767777777776444567777777763
No 323
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=88.31 E-value=1.1 Score=24.65 Aligned_cols=25 Identities=24% Similarity=0.277 Sum_probs=11.7
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 422 VLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 422 ~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
..++.++.+.|++++|.+.|+++++
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 324
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=88.24 E-value=9.3 Score=36.54 Aligned_cols=120 Identities=11% Similarity=0.036 Sum_probs=71.8
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHH
Q 010496 327 SHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMP--MKPNEVVLGSLLAACRTKGDIILAE 404 (509)
Q Consensus 327 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~ 404 (509)
...|+.-.|.+-+....+...-.|+.... ....+...|+++.+...+.... +.....+...++......|+.++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 34566655554444444333334443322 2233556677777777776652 3334556666777777777777777
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 405 RLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
...+.|+.....+++.....+..-...|-++++...++++...+
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 77777777666666655555555555667777777777766544
No 325
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=88.02 E-value=8.5 Score=28.09 Aligned_cols=61 Identities=25% Similarity=0.404 Sum_probs=47.0
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHH
Q 010496 156 IDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTII 219 (509)
Q Consensus 156 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 219 (509)
+..+...|++++|..+.+.+..||...|-+|.. .+.|..+++...+..|..+| .|....|.
T Consensus 46 lsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 46 LSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 456778999999999999998888888876654 46777788888888888877 55555553
No 326
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.01 E-value=1.5 Score=35.00 Aligned_cols=84 Identities=15% Similarity=0.167 Sum_probs=47.3
Q ss_pred HHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCH
Q 010496 86 LLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDI 165 (509)
Q Consensus 86 ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 165 (509)
++..+... +........++.+...+.. .+....+.++..|++.++.++...+++.... .-...++..|.+.|.+
T Consensus 13 vi~~~~~~--~~~~~l~~yLe~~~~~~~~-~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 13 VISAFEER--NQPEELIEYLEALVKENKE-NNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLY 86 (143)
T ss_dssp CHHHCTTT--T-GGGCTCCHHHHHHTSTC--SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSH
T ss_pred HHHHHHhC--CCHHHHHHHHHHHHhcccc-cCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchH
Confidence 34444444 5666666666666655533 3377777777777777777777776663322 2223455555555555
Q ss_pred HHHHHHHhcC
Q 010496 166 ESAVRMFDEM 175 (509)
Q Consensus 166 ~~A~~~~~~~ 175 (509)
++|.-++..+
T Consensus 87 ~~a~~Ly~~~ 96 (143)
T PF00637_consen 87 EEAVYLYSKL 96 (143)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHHHc
Confidence 5555555544
No 327
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=87.97 E-value=1 Score=26.57 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 420 NYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 420 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
++..|+..|...|++++|..++++..+
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 577888888888888888888887764
No 328
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=87.94 E-value=0.74 Score=25.45 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=21.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 387 LGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
+-.+..++.+.|++++|.+.|+++++
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44567788899999999999998763
No 329
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=87.70 E-value=1.3 Score=24.75 Aligned_cols=29 Identities=17% Similarity=0.276 Sum_probs=25.7
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 419 SNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 419 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
.+|..++..|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 36889999999999999999999988763
No 330
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=87.63 E-value=22 Score=32.32 Aligned_cols=18 Identities=17% Similarity=0.187 Sum_probs=11.4
Q ss_pred HHcCChHHHHHHHHHHHH
Q 010496 191 VKRGYFEEALECFREMQI 208 (509)
Q Consensus 191 ~~~~~~~~A~~~~~~m~~ 208 (509)
.+.|+.+.|..++.+...
T Consensus 4 ~~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhhCCHHHHHHHHHHhhh
Confidence 356666777766666654
No 331
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.08 E-value=20 Score=35.58 Aligned_cols=122 Identities=20% Similarity=0.217 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 010496 162 RGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYV 241 (509)
Q Consensus 162 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 241 (509)
.|+++.|..++..+++ ...+.++..+.+.|..++|+++- ..|+. -| ....+.|+++.|.++..+.
T Consensus 599 rrd~~~a~~vLp~I~k---~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-rF----elal~lgrl~iA~~la~e~ 663 (794)
T KOG0276|consen 599 RRDLEVADGVLPTIPK---EIRTKVAHFLESQGMKEQALELS-------TDPDQ-RF----ELALKLGRLDIAFDLAVEA 663 (794)
T ss_pred hccccccccccccCch---hhhhhHHhHhhhccchHhhhhcC-------CChhh-hh----hhhhhcCcHHHHHHHHHhh
Confidence 4555555555544442 22333444455555555554431 11111 11 1223445555555444332
Q ss_pred HHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010496 242 LKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQK 309 (509)
Q Consensus 242 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 309 (509)
. +..-|..|.++....+++..|.+.|.+... |..|+-.+...|+.+....+-....+
T Consensus 664 ~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-----~~~LlLl~t~~g~~~~l~~la~~~~~ 720 (794)
T KOG0276|consen 664 N------SEVKWRQLGDAALSAGELPLASECFLRARD-----LGSLLLLYTSSGNAEGLAVLASLAKK 720 (794)
T ss_pred c------chHHHHHHHHHHhhcccchhHHHHHHhhcc-----hhhhhhhhhhcCChhHHHHHHHHHHh
Confidence 1 233455555555555555555555554432 33344444444444433333333333
No 332
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=86.99 E-value=18 Score=30.83 Aligned_cols=177 Identities=13% Similarity=0.020 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChh-hHHHHHH--HHHhCCChHHHHHHHHHH
Q 010496 231 LGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLV-SWNSIIV--GFAVNGFVGEALEYFNSM 307 (509)
Q Consensus 231 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~A~~~~~~m 307 (509)
+..|.-=|.+..... |.-+.+||-|.-.+...|+++.|.+.|+...+-|+. -|..+-. ++--.|++.-|.+-+.+.
T Consensus 81 ~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 81 RALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAF 159 (297)
T ss_pred HHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHH
Confidence 333333344444332 444667777777777888888888888877765442 2222222 233457777777766665
Q ss_pred HHCCC-CCCHHHHHHHHHHHhccCCHHHHHHHH-HHhHHhcCCCCCHHHHHHH-HHHHHhcCChHHHHHHHHhCCCC---
Q 010496 308 QKEGF-KPDGVSFTGALTACSHAGLIEDGLRYF-DIMKKIYRVSPRIEHYGCI-VDLYSRAGRLEDALNVVENMPMK--- 381 (509)
Q Consensus 308 ~~~g~-~p~~~~~~~li~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~A~~~~~~~~~~--- 381 (509)
-.... .|-...|..+. -+.-++.+|..-+ ++.. + .+..-|... +..|.-.=..+.+.+-...-.-.
T Consensus 160 YQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~---~--~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~a~~n~~ 231 (297)
T COG4785 160 YQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE---K--SDKEQWGWNIVEFYLGKISEETLMERLKADATDNTS 231 (297)
T ss_pred HhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH---h--ccHhhhhHHHHHHHHhhccHHHHHHHHHhhccchHH
Confidence 55421 22222232222 1223444554333 3333 2 233333332 22222222222222222221100
Q ss_pred ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 382 ---PNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 382 ---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
.-..||-.|.+-+...|+.++|..+|+-++..+.-
T Consensus 232 ~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiannVy 269 (297)
T COG4785 232 LAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANNVY 269 (297)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhHH
Confidence 11347777888889999999999999988876543
No 333
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.57 E-value=12 Score=36.93 Aligned_cols=97 Identities=14% Similarity=0.064 Sum_probs=47.3
Q ss_pred hcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 010496 130 KFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQIS 209 (509)
Q Consensus 130 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 209 (509)
-.|+++.|..++..+.++ ..+.++..+-+.|-.++|+++-. |+.. -.....+.|+++.|.++..+..
T Consensus 598 mrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~s~-----D~d~---rFelal~lgrl~iA~~la~e~~-- 664 (794)
T KOG0276|consen 598 LRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALELST-----DPDQ---RFELALKLGRLDIAFDLAVEAN-- 664 (794)
T ss_pred hhccccccccccccCchh---hhhhHHhHhhhccchHhhhhcCC-----Chhh---hhhhhhhcCcHHHHHHHHHhhc--
Confidence 356666666665555522 22334444455555555555422 1111 1223345555555555543321
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 010496 210 GVEPDYVTIISVLNACANVGTLGIGLWIHRYVLK 243 (509)
Q Consensus 210 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 243 (509)
+..-|..|.++....+++..|.+.|.....
T Consensus 665 ----s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d 694 (794)
T KOG0276|consen 665 ----SEVKWRQLGDAALSAGELPLASECFLRARD 694 (794)
T ss_pred ----chHHHHHHHHHHhhcccchhHHHHHHhhcc
Confidence 334455555555666666666655554443
No 334
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=86.40 E-value=1.3 Score=23.10 Aligned_cols=22 Identities=23% Similarity=0.113 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHH
Q 010496 121 GTALLDMYAKFGRMDLATVVFD 142 (509)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~ 142 (509)
...+...+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445566666666666666554
No 335
>PRK10941 hypothetical protein; Provisional
Probab=86.24 E-value=4.8 Score=36.04 Aligned_cols=63 Identities=21% Similarity=0.074 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
..+.+-.+|.+.++++.|.++.+.++...|+++.-+..-+..|.+.|.+..|..=++..++..
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~ 245 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC 245 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC
Confidence 456666789999999999999999999999999889999999999999999999999887763
No 336
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=86.20 E-value=2.2 Score=25.05 Aligned_cols=28 Identities=25% Similarity=0.291 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
.+++.|...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4678888889999999999999888876
No 337
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=85.65 E-value=9.3 Score=32.19 Aligned_cols=79 Identities=15% Similarity=0.078 Sum_probs=48.1
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCCcHhHHHHHHHHHHhcCCH
Q 010496 190 FVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQ---DFKDNVKVCNTLIDLYSRCGCI 266 (509)
Q Consensus 190 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~ 266 (509)
+.+.|+ +.|.+.|-++...+.--++.....|.. |....+.+++..++..+++. +-.+|+..+..|+..|.+.|++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 334443 567777777766654434444444443 33466777777777776654 2256677777777777777777
Q ss_pred HHHH
Q 010496 267 EFAR 270 (509)
Q Consensus 267 ~~a~ 270 (509)
+.|.
T Consensus 195 e~AY 198 (203)
T PF11207_consen 195 EQAY 198 (203)
T ss_pred hhhh
Confidence 7664
No 338
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.50 E-value=13 Score=33.61 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHh
Q 010496 332 IEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVEN 377 (509)
Q Consensus 332 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 377 (509)
.++++.++..=. .+|+-||..+++.+++.+.+.+++.+|.++...
T Consensus 116 pq~~i~~l~npI-qYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~ 160 (418)
T KOG4570|consen 116 PQKAIYTLVNPI-QYGIFPDQFTFCLLMDSFLKKENYKDAASVVTE 160 (418)
T ss_pred hHHHHHHHhCcc-hhccccchhhHHHHHHHHHhcccHHHHHHHHHH
Confidence 344444444444 344444544445555555555544444444433
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=85.38 E-value=1.8 Score=26.19 Aligned_cols=27 Identities=26% Similarity=0.462 Sum_probs=23.0
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 422 VLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 422 ~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
..|+.+|...|+.+.|.++++++...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 357889999999999999999988654
No 340
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=85.37 E-value=7.2 Score=28.25 Aligned_cols=45 Identities=18% Similarity=0.243 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHH
Q 010496 198 EALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVL 242 (509)
Q Consensus 198 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 242 (509)
++.+-++.+....+.|++....+.+++|.+.+|+..|.++++-+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444445555555566666666666666666666666666666555
No 341
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=84.46 E-value=40 Score=32.50 Aligned_cols=110 Identities=8% Similarity=0.054 Sum_probs=61.7
Q ss_pred cchhHHHH-HHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHH
Q 010496 96 QCLFLGAM-IHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV---KSSFTWNAMIDGYMRRGDIESAVRM 171 (509)
Q Consensus 96 ~~~~~a~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~ 171 (509)
|+...|.+ +++-+....-.|+ ............|+++.+.+.+..... ....+...++....+.|+++.|..+
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~---~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~ 379 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPV---LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALST 379 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCch---hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHH
Confidence 55544433 3333333322333 333344455667888888777766543 3555667777777778888888777
Q ss_pred HhcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010496 172 FDEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQI 208 (509)
Q Consensus 172 ~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 208 (509)
-.-|... ++.............|-++++.-.+++...
T Consensus 380 a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~ 419 (831)
T PRK15180 380 AEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLL 419 (831)
T ss_pred HHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhc
Confidence 7665432 333333333334445566777766666654
No 342
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=84.33 E-value=54 Score=33.82 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=34.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCC---------CCchHHHHHHHHHHcCCchHHHHHHH
Q 010496 395 RTKGDIILAERLMKYLVDLDPG---------VDSNYVLLANMYAAVGKWDGAGKIRR 442 (509)
Q Consensus 395 ~~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~ 442 (509)
+-.+++..|...++.+.+.... .+..+...+..+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 4578898999988888764321 12335555556667799999999997
No 343
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=83.67 E-value=31 Score=30.97 Aligned_cols=67 Identities=16% Similarity=0.136 Sum_probs=47.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHH
Q 010496 252 VCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEALEYFNSMQK-----EGFKPDGVS 318 (509)
Q Consensus 252 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~ 318 (509)
+++.....|..+|.+.+|..+.++...- +...|-.++..+...|+--.|.+-++.+.+ .|+..+...
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsi 355 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSI 355 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhH
Confidence 3455667788888888888888887643 456788888888888887777777776643 355555443
No 344
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=83.48 E-value=40 Score=32.70 Aligned_cols=275 Identities=7% Similarity=-0.015 Sum_probs=136.5
Q ss_pred hHHHHHHHH--cCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHH--HHHHHHHHHhCCCCC-------
Q 010496 48 WTSSISRHC--RSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLG--AMIHGLVCKLGLDRN------- 116 (509)
Q Consensus 48 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a--~~~~~~~~~~~~~~~------- 116 (509)
|..+-.++. .++.++..++++..+...|.......++.....+.+. +..... ++-++.+...-..|.
T Consensus 18 ~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt--~~tq~~~ll~el~aL~~~~~~~~~~~~gld 95 (696)
T KOG2471|consen 18 YSLLCQAHEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKT--GCTQHSVLLKELEALTADADAPGDVSSGLS 95 (696)
T ss_pred HHHHHHHHhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhc--ccchhHHHHHHHHHHHHhhccccchhcchh
Confidence 444444443 3577889999999998887666666666666655554 332221 111111111111111
Q ss_pred ---chHHHHHHHHHHHhcCCchHHHHHHHhcCCCC-------h-HHHHHHHHHHHhCCCHHHHHHHHhcCC---------
Q 010496 117 ---NVMVGTALLDMYAKFGRMDLATVVFDAMRVKS-------S-FTWNAMIDGYMRRGDIESAVRMFDEMP--------- 176 (509)
Q Consensus 117 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~-~~~~~l~~~~~~~~~~~~A~~~~~~~~--------- 176 (509)
+...+......|....++..|+++......+. . .........+......++|+.++.-+.
T Consensus 96 ~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~ 175 (696)
T KOG2471|consen 96 LKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMK 175 (696)
T ss_pred hhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 12233333444455556666766666554321 1 111122333455556666666554221
Q ss_pred ---------------CCC------------HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHH-HHHHHcc
Q 010496 177 ---------------VRD------------AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISV-LNACANV 228 (509)
Q Consensus 177 ---------------~~~------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~ 228 (509)
.|. ....---++.|.+..+...+..-.+.... +.-|...+..| -..+.-.
T Consensus 176 ~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK~vmn--~a~~s~~~l~LKsq~eY~~ 253 (696)
T KOG2471|consen 176 LVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVKHVMN--IAQDSSMALLLKSQLEYAH 253 (696)
T ss_pred ccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhhhhhh--hcCCCcHHHHHHHHHHHHh
Confidence 000 00011112333333333333322222211 11122222222 2335567
Q ss_pred CCHHHHHHHHHHHHH---cCCCCc-----HhHHHHHHHHHHhcCCHHHHHHHHHhccC-----------C----------
Q 010496 229 GTLGIGLWIHRYVLK---QDFKDN-----VKVCNTLIDLYSRCGCIEFARQVFQRMHK-----------R---------- 279 (509)
Q Consensus 229 ~~~~~a~~~~~~~~~---~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----------~---------- 279 (509)
|++.+|.+++...-- .|...+ ...+|.|...+.+.|.+..+..+|.+..+ +
T Consensus 254 gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nk 333 (696)
T KOG2471|consen 254 GNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNK 333 (696)
T ss_pred cchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhccc
Confidence 888888877654321 121111 12346666666777777777777666542 1
Q ss_pred -ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 010496 280 -TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSH 328 (509)
Q Consensus 280 -~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~ 328 (509)
-..+||. .-.|...|++-.|.+.|.+.... +..++..|..+..+|..
T Consensus 334 s~eilYNc-G~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 334 SMEILYNC-GLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIM 381 (696)
T ss_pred chhhHHhh-hHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHH
Confidence 1123332 34577789999999999888775 56678888888888763
No 345
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.36 E-value=8.3 Score=28.27 Aligned_cols=47 Identities=17% Similarity=0.230 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 010496 198 EALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQ 244 (509)
Q Consensus 198 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 244 (509)
+..+-++.+....+.|++....+.+++|.+.+++..|.++++-+...
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34444555555556677777777777777777777777777666544
No 346
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=83.27 E-value=17 Score=32.31 Aligned_cols=87 Identities=11% Similarity=0.065 Sum_probs=47.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----
Q 010496 187 LNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR---- 262 (509)
Q Consensus 187 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---- 262 (509)
|.+++..|+|.+++...-+-.+.--+.-.......|-.|++.+.+..+.++-...++.--..+..-|..+++.|..
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 5667777777777766555433211112334444455566777777666666665554223333346655555544
Q ss_pred -cCCHHHHHHHH
Q 010496 263 -CGCIEFARQVF 273 (509)
Q Consensus 263 -~g~~~~a~~~~ 273 (509)
.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 46666666665
No 347
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.03 E-value=33 Score=30.36 Aligned_cols=151 Identities=9% Similarity=0.041 Sum_probs=76.6
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHh---HHHHHHHHHHccCCHHHHHHHHHHHHHc---CC--CCcHhHHHHHHHHHHhcC
Q 010496 193 RGYFEEALECFREMQISGVEPDYV---TIISVLNACANVGTLGIGLWIHRYVLKQ---DF--KDNVKVCNTLIDLYSRCG 264 (509)
Q Consensus 193 ~~~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~g 264 (509)
...+++|+.-|++..+..-.-... ....++....+.+++++....|.+++.- .+ .-+....|.+++..+...
T Consensus 40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~ 119 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK 119 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence 346777777777776642122222 3334566677777777777777766531 11 123344555555555555
Q ss_pred CHHHHHHHHHhccC-----CCh----hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC----CC-------HHHHHHHHH
Q 010496 265 CIEFARQVFQRMHK-----RTL----VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFK----PD-------GVSFTGALT 324 (509)
Q Consensus 265 ~~~~a~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~----p~-------~~~~~~li~ 324 (509)
+.+-..++|+.-.+ .+. .|-.-+...|...+.+.+..++++++...--. -| ...|..-|.
T Consensus 120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ 199 (440)
T KOG1464|consen 120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ 199 (440)
T ss_pred hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence 54444444433221 111 12234555566666666666666665543111 11 123444455
Q ss_pred HHhccCCHHHHHHHHHHhH
Q 010496 325 ACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 325 ~~~~~~~~~~a~~~~~~~~ 343 (509)
.|....+-.+-..++++..
T Consensus 200 mYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 200 MYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hhhhhcccHHHHHHHHHHH
Confidence 5555555555555555554
No 348
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=82.81 E-value=1.1e+02 Score=36.26 Aligned_cols=140 Identities=9% Similarity=0.024 Sum_probs=87.2
Q ss_pred cchhHHHHHHHHHHHhCCCC-CchHHHHHHHHHHHhcCCchHHHHHHHh-cCCCChHHHHHHHHHHHhCCCHHHHHHHHh
Q 010496 96 QCLFLGAMIHGLVCKLGLDR-NNVMVGTALLDMYAKFGRMDLATVVFDA-MRVKSSFTWNAMIDGYMRRGDIESAVRMFD 173 (509)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 173 (509)
+.+..|...++.-.....+. .....+..+...|+..+++|...-+... ...++ ...-|-.....|+++.|...|+
T Consensus 1397 ~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye 1473 (2382)
T KOG0890|consen 1397 KAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYE 1473 (2382)
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHH
Confidence 55566666665520000000 0134455566689999999888877763 33333 2233445667899999999999
Q ss_pred cCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHH-HHHHHccCCHHHHHHHHH
Q 010496 174 EMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISV-LNACANVGTLGIGLWIHR 239 (509)
Q Consensus 174 ~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~ 239 (509)
.+.+. ...+++-++......|.++.++-..+-.... ..+....++.+ +.+.-+.++++.....+.
T Consensus 1474 ~~~q~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~ 1542 (2382)
T KOG0890|consen 1474 RLIQKDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS 1542 (2382)
T ss_pred HhhcCCCccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh
Confidence 88765 3557888888888888888888766665543 23333344333 445567778877777665
No 349
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=82.16 E-value=3.5 Score=21.79 Aligned_cols=29 Identities=31% Similarity=0.236 Sum_probs=14.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010496 387 LGSLLAACRTKGDIILAERLMKYLVDLDP 415 (509)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 415 (509)
+..+...+...|+++.|...+++.++..|
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 33444455555555555555555554443
No 350
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=81.06 E-value=3.1 Score=26.43 Aligned_cols=32 Identities=19% Similarity=0.244 Sum_probs=25.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 010496 389 SLLAACRTKGDIILAERLMKYLVDLDPGVDSN 420 (509)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 420 (509)
.+.-++.+.|++++|.+..+.+++..|.+..+
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 45567889999999999999999999987543
No 351
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=80.82 E-value=20 Score=30.32 Aligned_cols=73 Identities=14% Similarity=0.031 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CCCHHHHHHHHHHHHhcCChHHH
Q 010496 298 GEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRV--SPRIEHYGCIVDLYSRAGRLEDA 371 (509)
Q Consensus 298 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A 371 (509)
+.|.+.|-++...+.--++.....|..-| -..+.++++.++.++.+...- .+|+..+..|+..|.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 34444444444443332333333333222 234455555555444432111 23444555555555555555444
No 352
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.19 E-value=72 Score=32.42 Aligned_cols=177 Identities=15% Similarity=0.057 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHH-----HHhcCCHHHHHHHHHhccC--------CChhhHHHHHHHHHhCC--
Q 010496 231 LGIGLWIHRYVLKQDFKDNVKVCNTLIDL-----YSRCGCIEFARQVFQRMHK--------RTLVSWNSIIVGFAVNG-- 295 (509)
Q Consensus 231 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l~~~~~~~~-- 295 (509)
...+.++++...+.| +......+..+ +....+.+.|+.+|+.+.+ -.......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCC
Confidence 345666666666655 22222222222 2234566666666665533 13344555555555532
Q ss_pred ---ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh----cCC
Q 010496 296 ---FVGEALEYFNSMQKEGFKPDGVSFTGALTACSH-AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSR----AGR 367 (509)
Q Consensus 296 ---~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 367 (509)
+.+.|..++.+....|. |+...+...+.-... ..+...|.++|.... ..|.. ..+-.+..+|.. ..+
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa-~~G~~---~A~~~la~~y~~G~gv~r~ 379 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAA-KAGHI---LAIYRLALCYELGLGVERN 379 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHH-HcCCh---HHHHHHHHHHHhCCCcCCC
Confidence 45567777777766653 344443333222222 234567777777766 33332 222222222222 234
Q ss_pred hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 368 LEDALNVVENMP--MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 368 ~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
.+.|..++++.- ..|....-...+..+.. +.++.+.-.+..+.+.+..
T Consensus 380 ~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~ 429 (552)
T KOG1550|consen 380 LELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYE 429 (552)
T ss_pred HHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence 556666665541 12221111222222222 5555555555555554443
No 353
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.89 E-value=5 Score=24.29 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=13.8
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHC
Q 010496 287 IIVGFAVNGFVGEALEYFNSMQKE 310 (509)
Q Consensus 287 l~~~~~~~~~~~~A~~~~~~m~~~ 310 (509)
+..+|...|+.+.|.+++++....
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHc
Confidence 445555666666666666665543
No 354
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.63 E-value=8.4 Score=32.80 Aligned_cols=73 Identities=19% Similarity=0.146 Sum_probs=52.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHh-CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHH
Q 010496 355 YGCIVDLYSRAGRLEDALNVVEN-MPMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD---SNYVLLANM 427 (509)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~~~~-~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~ 427 (509)
.+..++.+.+.+...+|+...+. .+-+|. ...-..+++.++-.|++++|..-++-+-...|... ..|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34456677788888888888765 466674 44566677888899999999998888888877743 245555544
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=78.75 E-value=4.8 Score=27.88 Aligned_cols=46 Identities=9% Similarity=0.003 Sum_probs=31.6
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCch---HHHHHHHHHHcCCchHHHHHH
Q 010496 396 TKGDIILAERLMKYLVDLDPGVDSN---YVLLANMYAAVGKWDGAGKIR 441 (509)
Q Consensus 396 ~~g~~~~a~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~ 441 (509)
..++.++|+..|+++++..++++.- +..++.+|+..|++.++++.-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667788888888888776665443 445566677777777766643
No 356
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=78.64 E-value=93 Score=32.81 Aligned_cols=219 Identities=14% Similarity=0.092 Sum_probs=113.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCC----Hh---HHHHH-HHHHHccCCHHHHHHHHHHHHHc----CCCCcHhHHHHHH
Q 010496 190 FVKRGYFEEALECFREMQISGVEPD----YV---TIISV-LNACANVGTLGIGLWIHRYVLKQ----DFKDNVKVCNTLI 257 (509)
Q Consensus 190 ~~~~~~~~~A~~~~~~m~~~~~~p~----~~---~~~~l-~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 257 (509)
.....++++|..++.++...-..|+ .. .++.+ .......|+++.+.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 4556788999988888765422222 11 23332 22345678888888888777654 1234456677777
Q ss_pred HHHHhcCCHHHHHHHHHhccCC----ChhhHHHHH-----HHHHhCCC--hHHHHHHHHHHHHCC--CCC----CHHHHH
Q 010496 258 DLYSRCGCIEFARQVFQRMHKR----TLVSWNSII-----VGFAVNGF--VGEALEYFNSMQKEG--FKP----DGVSFT 320 (509)
Q Consensus 258 ~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~l~-----~~~~~~~~--~~~A~~~~~~m~~~g--~~p----~~~~~~ 320 (509)
.+..-.|++++|..+.+...+. ++..+..+. ..+...|. +.+.+..+....... -.| -..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 8888889999998887766532 443333222 23445663 233333333332210 111 123344
Q ss_pred HHHHHHhcc-CCHHHHHHHHHHhHHhcCCCCCHHHH--HHHHHHHHhcCChHHHHHHHHhCC-------CCCCHHHHHHH
Q 010496 321 GALTACSHA-GLIEDGLRYFDIMKKIYRVSPRIEHY--GCIVDLYSRAGRLEDALNVVENMP-------MKPNEVVLGSL 390 (509)
Q Consensus 321 ~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~~-------~~p~~~~~~~l 390 (509)
.++.++.+. +...++..-++--. .....|-...+ ..|+..+...|+.++|...++++. ..++...-...
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~-~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGS-VYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhh-hcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 444444441 11122222222222 11222222222 367777888899999988887761 12222232333
Q ss_pred HHH--HHhcCCHHHHHHHHHH
Q 010496 391 LAA--CRTKGDIILAERLMKY 409 (509)
Q Consensus 391 ~~~--~~~~g~~~~a~~~~~~ 409 (509)
+.. ....|+...+.....+
T Consensus 664 v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hhHHHhcccCCHHHHHHHHHh
Confidence 332 3456777777666555
No 357
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=78.63 E-value=15 Score=31.65 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhcCCHH-------HHHHHHHHHHhcCCC------CCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010496 386 VLGSLLAACRTKGDII-------LAERLMKYLVDLDPG------VDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~-------~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 449 (509)
.+..+.+.|...|+.+ .|.+.|+++.+.... .......++....+.|++++|.+.|.++...+-
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 4555566666666644 445555555543322 123566788889999999999999999987654
No 358
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=78.22 E-value=16 Score=30.14 Aligned_cols=66 Identities=21% Similarity=0.224 Sum_probs=36.7
Q ss_pred CCCCCH-HHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 379 PMKPNE-VVLGSLLAACRTKG-----------DIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 379 ~~~p~~-~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.+.|+. .++..+..++...+ .+++|...|+++.+.+|.+. .|..-+... .+|-++..++.+
T Consensus 63 ~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~ 135 (186)
T PF06552_consen 63 KINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHK 135 (186)
T ss_dssp HH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHH
T ss_pred hcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHH
Confidence 355654 35555555554332 36777788888888888764 555554444 246777777766
Q ss_pred CCCcc
Q 010496 447 RGIQK 451 (509)
Q Consensus 447 ~~~~~ 451 (509)
++...
T Consensus 136 ~~~~~ 140 (186)
T PF06552_consen 136 QGLGQ 140 (186)
T ss_dssp SSS--
T ss_pred HHhhh
Confidence 65443
No 359
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.20 E-value=33 Score=27.40 Aligned_cols=19 Identities=11% Similarity=0.170 Sum_probs=9.0
Q ss_pred HHhcCCHHHHHHHHHhccC
Q 010496 260 YSRCGCIEFARQVFQRMHK 278 (509)
Q Consensus 260 ~~~~g~~~~a~~~~~~~~~ 278 (509)
+...|+|.+|.++|+++.+
T Consensus 54 ~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 54 LIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHcCCHHHHHHHHHhhhc
Confidence 3444445555555544443
No 360
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=77.62 E-value=54 Score=29.55 Aligned_cols=110 Identities=16% Similarity=0.167 Sum_probs=0.0
Q ss_pred HHHHHHHHh-----cCCCCCHhHHHHHHHHHHH--cCChHHHHHHHHHHHHc--CCCCCHhHHHHHHHHHHccCCHHHHH
Q 010496 165 IESAVRMFD-----EMPVRDAISWTALLNGFVK--RGYFEEALECFREMQIS--GVEPDYVTIISVLNACANVGTLGIGL 235 (509)
Q Consensus 165 ~~~A~~~~~-----~~~~~~~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~ 235 (509)
+.+|+++|+ +..-.|......+++.... ......-.++.+-+... + .++..+...++..++..+++....
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~-~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSK-SLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhcccc-CCChhHHHHHHHHHHhcccHHHHH
Q ss_pred HHHHHHHHc-CCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010496 236 WIHRYVLKQ-DFKDNVKVCNTLIDLYSRCGCIEFARQVFQR 275 (509)
Q Consensus 236 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 275 (509)
+++...... +...|...|..+++.....|+..-..++..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
No 361
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=77.47 E-value=1.1e+02 Score=33.24 Aligned_cols=159 Identities=6% Similarity=-0.150 Sum_probs=65.2
Q ss_pred HHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH-HHHHHHHhHHhcCCCCC
Q 010496 273 FQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIED-GLRYFDIMKKIYRVSPR 351 (509)
Q Consensus 273 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~-a~~~~~~~~~~~~~~~~ 351 (509)
+..+..+|...-...+.++...+..+. +.... ..++...-...+.++...+..+. +...+..+.+ .++
T Consensus 720 ~~~L~D~d~~VR~~Av~aL~~~~~~~~----l~~~l---~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~----D~d 788 (897)
T PRK13800 720 AAALGDPDHRVRIEAVRALVSVDDVES----VAGAA---TDENREVRIAVAKGLATLGAGGAPAGDAVRALTG----DPD 788 (897)
T ss_pred HHHhcCCCHHHHHHHHHHHhcccCcHH----HHHHh---cCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc----CCC
Confidence 334445555555555555554433221 11111 13344444444444444443322 2233333331 234
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAV 431 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 431 (509)
...-...+.++.+.|..+.+...+..+-..++..+=...+.++...+. .++...+..+++ -.+..+-...+.++.+.
T Consensus 789 ~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~--D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 789 PLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT--DPHLDVRKAAVLALTRW 865 (897)
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc--CCCHHHHHHHHHHHhcc
Confidence 445555555666665544433333222223343333344445544443 234344443332 11233444444444443
Q ss_pred CCchHHHHHHHHHH
Q 010496 432 GKWDGAGKIRRTMK 445 (509)
Q Consensus 432 g~~~~A~~~~~~m~ 445 (509)
+.-..+...+....
T Consensus 866 ~~~~~a~~~L~~al 879 (897)
T PRK13800 866 PGDPAARDALTTAL 879 (897)
T ss_pred CCCHHHHHHHHHHH
Confidence 22334444444443
No 362
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=77.46 E-value=31 Score=30.78 Aligned_cols=87 Identities=16% Similarity=0.154 Sum_probs=48.4
Q ss_pred HHHHHhCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH--
Q 010496 288 IVGFAVNGFVGEALEYFNSMQKE--GFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYS-- 363 (509)
Q Consensus 288 ~~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-- 363 (509)
|++++..|+|.+++...-+-... .++|.. ...-|-.|.+.+.+..+.++-..-.+ ..-.-+..-|..++..|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkI--leLCILLysKv~Ep~amlev~~~WL~-~p~Nq~lp~y~~vaELyLl~ 166 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKI--LELCILLYSKVQEPAAMLEVASAWLQ-DPSNQSLPEYGTVAELYLLH 166 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHH--HHHHHHHHHHhcCHHHHHHHHHHHHh-CcccCCchhhHHHHHHHHHH
Confidence 56677777777776655444332 233333 33334447777777777766665552 111222333666655554
Q ss_pred ---hcCChHHHHHHHHh
Q 010496 364 ---RAGRLEDALNVVEN 377 (509)
Q Consensus 364 ---~~g~~~~A~~~~~~ 377 (509)
-.|.+++|+++...
T Consensus 167 VLlPLG~~~eAeelv~g 183 (309)
T PF07163_consen 167 VLLPLGHFSEAEELVVG 183 (309)
T ss_pred HHhccccHHHHHHHHhc
Confidence 35788888877743
No 363
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.17 E-value=4.1 Score=21.48 Aligned_cols=29 Identities=21% Similarity=0.208 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 419 SNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 419 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
..|..++.++...|++++|...+++.++.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46788999999999999999999888753
No 364
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=77.04 E-value=6.6 Score=32.32 Aligned_cols=46 Identities=15% Similarity=0.081 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC----chHHHHHHHHH
Q 010496 399 DIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGK----WDGAGKIRRTM 444 (509)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----~~~A~~~~~~m 444 (509)
.+++|+.-|++++.++|+...++.+++.+|...+. ..+|..+|++.
T Consensus 50 miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 50 MIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 46777888888899999988999999999886543 33444444443
No 365
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=76.96 E-value=4.4 Score=38.73 Aligned_cols=52 Identities=19% Similarity=0.032 Sum_probs=25.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 392 AACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
.++.+.+++..|+.=+.++++.+|.....|..=+.++.+.+++.+|...|+.
T Consensus 46 ~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~ 97 (476)
T KOG0376|consen 46 LAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEK 97 (476)
T ss_pred hhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHH
Confidence 3444445555555555555555544444444444455555555555554443
No 366
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=75.99 E-value=22 Score=27.35 Aligned_cols=59 Identities=19% Similarity=0.271 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 010496 299 EALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIV 359 (509)
Q Consensus 299 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 359 (509)
+..+-+..+....+.|++.....-+++|.+.+++..|.++|+-++.+.| +....|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K~g--~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDKCG--AQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHhcc--cHHHHHHHHH
Confidence 4556666677777889999999999999999999999999998885443 3333565554
No 367
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=75.71 E-value=9.8 Score=32.89 Aligned_cols=84 Identities=12% Similarity=0.042 Sum_probs=46.1
Q ss_pred HhccCCHHHHHHHHHHhHHhcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHH
Q 010496 326 CSHAGLIEDGLRYFDIMKKIYRVSPRI-EHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEV-VLGSLLAACRTKGDIIL 402 (509)
Q Consensus 326 ~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~g~~~~ 402 (509)
|.....++.|+..|.+.. -+.|+. .-|..=+.++.+..+++.+..--.+. .+.||.. ....+..+......+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 444556666776666665 334554 33344455566666666655444333 4556544 33333444556666777
Q ss_pred HHHHHHHHHh
Q 010496 403 AERLMKYLVD 412 (509)
Q Consensus 403 a~~~~~~~~~ 412 (509)
|+..+.++..
T Consensus 97 aI~~Lqra~s 106 (284)
T KOG4642|consen 97 AIKVLQRAYS 106 (284)
T ss_pred HHHHHHHHHH
Confidence 7777666644
No 368
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=75.36 E-value=61 Score=29.04 Aligned_cols=145 Identities=12% Similarity=0.029 Sum_probs=67.2
Q ss_pred HHHHcCCChhHHHHHHHHH----hhCCCCCCcccHHHHHHhhcCCCc---cchhHHHHHHHHHHHhCCCCCchHHHHHHH
Q 010496 53 SRHCRSGRIAEAALEFTRM----TLHGTNPNHITFITLLSGCADFPS---QCLFLGAMIHGLVCKLGLDRNNVMVGTALL 125 (509)
Q Consensus 53 ~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 125 (509)
..+.+.|+...|-++-.-| .+.++++|......++..+...+. .......+...+-...+..-.++..+..+.
T Consensus 18 ~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a 97 (260)
T PF04190_consen 18 LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLA 97 (260)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 3455666665555554333 334566666555555554433311 222223333333311122223567777777
Q ss_pred HHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHH-HHHHHHHHHcCChHHHHHHHH
Q 010496 126 DMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISW-TALLNGFVKRGYFEEALECFR 204 (509)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~A~~~~~ 204 (509)
..|.+.|++.+|+..|-.-..++...+..++..+...|...++ ..| .-.+-.|...++...|..++.
T Consensus 98 ~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~------------dlfi~RaVL~yL~l~n~~~A~~~~~ 165 (260)
T PF04190_consen 98 EKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA------------DLFIARAVLQYLCLGNLRDANELFD 165 (260)
T ss_dssp HHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H------------HHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch------------hHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 7888888877777766544444444443344444434433322 111 223334556677777777766
Q ss_pred HHHHc
Q 010496 205 EMQIS 209 (509)
Q Consensus 205 ~m~~~ 209 (509)
...+.
T Consensus 166 ~f~~~ 170 (260)
T PF04190_consen 166 TFTSK 170 (260)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=74.94 E-value=10 Score=26.38 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=20.8
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHH
Q 010496 328 HAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDALN 373 (509)
Q Consensus 328 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~ 373 (509)
..++.++|+..|+.+.++..-.++ -.++..++.+|+..|++.++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~ 64 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLA 64 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555532222222 1233444555555555555444
No 370
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=74.86 E-value=7.7 Score=28.01 Aligned_cols=42 Identities=17% Similarity=0.145 Sum_probs=23.2
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 406 LMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
-+++.++.+|++...-..++..+...|++++|++.+-.+++.
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344445555665556666666666666666666666555544
No 371
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=74.67 E-value=12 Score=26.66 Aligned_cols=33 Identities=6% Similarity=0.047 Sum_probs=16.5
Q ss_pred CCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCH
Q 010496 132 GRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDI 165 (509)
Q Consensus 132 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 165 (509)
|+.+.|.++++.+. +.+..|..++.++...|.-
T Consensus 50 g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~ 82 (88)
T cd08819 50 GNESGARELLKRIV-QKEGWFSKFLQALRETEHH 82 (88)
T ss_pred CcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCch
Confidence 45555555555555 4444455555555444443
No 372
>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases
Probab=74.12 E-value=4 Score=31.14 Aligned_cols=38 Identities=50% Similarity=0.691 Sum_probs=26.3
Q ss_pred cccEEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHcCccCCCCcc
Q 010496 454 GLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVPETVAG 503 (509)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~pd~~~~ 503 (509)
+++|+.. +.|..|+.+||.. .+.++|...|+.|++...
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~ 39 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEV 39 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhh
Confidence 3556555 8899999999987 333455666777766554
No 373
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=74.03 E-value=67 Score=28.87 Aligned_cols=26 Identities=12% Similarity=0.217 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHh
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVEN 377 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~ 377 (509)
...+..+...|++.++.+.+.++..+
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~ 140 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRR 140 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 44455555555555555555555443
No 374
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.30 E-value=1.4e+02 Score=32.06 Aligned_cols=220 Identities=10% Similarity=0.018 Sum_probs=0.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHhcCCCC-------hHHHHHHHHHHHhCCCH--HHHHHHHhcCCCCCHhHHHHHHHH--
Q 010496 121 GTALLDMYAKFGRMDLATVVFDAMRVKS-------SFTWNAMIDGYMRRGDI--ESAVRMFDEMPVRDAISWTALLNG-- 189 (509)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~--~~A~~~~~~~~~~~~~~~~~li~~-- 189 (509)
|..|+..|...|+.++|++++.+....+ ...+..++..+.+.+.. +-+.+.-+.....++..-..+...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~~ 586 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSED 586 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeeccC
Q ss_pred --------------HHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC--------HHHHHHH--HHHHHH--
Q 010496 190 --------------FVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGT--------LGIGLWI--HRYVLK-- 243 (509)
Q Consensus 190 --------------~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~--------~~~a~~~--~~~~~~-- 243 (509)
|......+-+..+++.+....-.++....+.++..|...=+ -+++.+. .+.+..
T Consensus 587 ~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~rekl~~~l 666 (877)
T KOG2063|consen 587 KQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTVREKLLDFL 666 (877)
T ss_pred hhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhHHHHHHHHh
Q ss_pred ------------cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 010496 244 ------------QDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEG 311 (509)
Q Consensus 244 ------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 311 (509)
..++. ...|....-.+.+.|+.++|+.++-... ++++.|..+....-+ .
T Consensus 667 ~~s~~Y~p~~~L~~~~~-~~l~ee~aill~rl~khe~aL~Iyv~~L-----------------~d~~~A~~Yc~~~y~-~ 727 (877)
T KOG2063|consen 667 ESSDLYDPQLLLERLNG-DELYEERAILLGRLGKHEEALHIYVHEL-----------------DDIDAAESYCLPQYE-S 727 (877)
T ss_pred hhhcccCcchhhhhccc-hhHHHHHHHHHhhhhhHHHHHHHHHHHh-----------------cchhHHHHHHHHhcc-C
Q ss_pred CCCCHHHHHHHHHHHhcc-CCHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 010496 312 FKPDGVSFTGALTACSHA-GLIEDGLRYFDIMKKIYRVSPRIEHYGCIV 359 (509)
Q Consensus 312 ~~p~~~~~~~li~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 359 (509)
..++...|..++..+... .++.......-...+.+.-+.|..-+-.++
T Consensus 728 ~~~~~~~y~~lL~~~l~~~~d~~~~~~~il~~l~~h~~r~d~~~~~~~L 776 (877)
T KOG2063|consen 728 DKTNKEIYLTLLRIYLNPIHDYKSGPLYILNFLQKHADRLDLAQVLKLL 776 (877)
T ss_pred CCcccHHHHHHHHHHhcchhhccccchhhhhHHHhhhhhcCHHHHHHhC
No 375
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.67 E-value=2.8 Score=38.07 Aligned_cols=88 Identities=11% Similarity=0.220 Sum_probs=46.2
Q ss_pred hcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 010496 364 RAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIR 441 (509)
Q Consensus 364 ~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 441 (509)
..|.++.|++.+... ...|. ...|..-..++.+.++...|++-+..+++++|+...-|-.-..+..-.|+|++|.+.+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl 205 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL 205 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence 344455555555443 33332 2344444445555555566666666666655555555555555555556666666666
Q ss_pred HHHHhCCCcc
Q 010496 442 RTMKGRGIQK 451 (509)
Q Consensus 442 ~~m~~~~~~~ 451 (509)
....+.++.+
T Consensus 206 ~~a~kld~dE 215 (377)
T KOG1308|consen 206 ALACKLDYDE 215 (377)
T ss_pred HHHHhccccH
Confidence 5555555443
No 376
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=72.53 E-value=92 Score=29.80 Aligned_cols=51 Identities=8% Similarity=0.061 Sum_probs=28.3
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHh--ccCCHHHHHHHHHHhH
Q 010496 292 AVNGFVGEALEYFNSMQKEGFKPDGV--SFTGALTACS--HAGLIEDGLRYFDIMK 343 (509)
Q Consensus 292 ~~~~~~~~A~~~~~~m~~~g~~p~~~--~~~~li~~~~--~~~~~~~a~~~~~~~~ 343 (509)
.+.+++..|.++++.+... ++++.. .+..+..+|. ..-++++|.+.++...
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 3566677777777776665 444433 2333333333 3455666777766665
No 377
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=71.79 E-value=65 Score=27.74 Aligned_cols=78 Identities=12% Similarity=0.070 Sum_probs=52.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh-cCCCCCHHHHHHHHHH
Q 010496 283 SWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKI-YRVSPRIEHYGCIVDL 361 (509)
Q Consensus 283 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~li~~ 361 (509)
+.+.-++.+.+.+...+|+...++-++.. +.|.-+-..+++.+|-.|++++|..-++-..+. ....+....|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 34455677888888999999888877762 234445556788889999999998888776621 1122335566666654
No 378
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=71.69 E-value=8.8 Score=20.69 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=23.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 010496 398 GDIILAERLMKYLVDLDPGVDSNYVLLANM 427 (509)
Q Consensus 398 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 427 (509)
|+.+.+..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 467888889999988888777777766643
No 379
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=71.68 E-value=60 Score=33.37 Aligned_cols=64 Identities=11% Similarity=0.137 Sum_probs=40.9
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHh----------HHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYV----------TIISVLNACANVGTLGIGLWIHRYVLKQD 245 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 245 (509)
.+.+...++-.|....+++..+++.+.++. -||.. .|...++--.+-||-++|+...-.+++..
T Consensus 200 ~~d~V~nlmlSyRDvQdY~amirLVe~Lk~---iP~t~~vve~~nv~f~YaFALNRRNr~GDRakAL~~~l~lve~e 273 (1226)
T KOG4279|consen 200 HPDTVSNLMLSYRDVQDYDAMIRLVEDLKR---IPDTLKVVETHNVRFHYAFALNRRNRPGDRAKALNTVLPLVEKE 273 (1226)
T ss_pred CHHHHHHHHhhhccccchHHHHHHHHHHHh---CcchhhhhccCceEEEeeehhcccCCCccHHHHHHHHHHHHHhc
Confidence 455666777778888888888888888776 23221 23333444445677777777776666553
No 380
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=71.61 E-value=34 Score=24.39 Aligned_cols=38 Identities=13% Similarity=0.098 Sum_probs=21.8
Q ss_pred hcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHH
Q 010496 262 RCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 300 (509)
Q Consensus 262 ~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 300 (509)
..|+.+.|.+++..+. +.+..|..+++++...|.-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 3455666666666666 5556666666666555554433
No 381
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=70.97 E-value=39 Score=24.84 Aligned_cols=85 Identities=14% Similarity=0.090 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHC
Q 010496 231 LGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKE 310 (509)
Q Consensus 231 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~ 310 (509)
.++|..+-+.+...+ .....+--+-+..+...|+|++|..+.+.+.-||...|.++-. -+.|..+++..-+.+|...
T Consensus 21 HqEA~tIAdwL~~~~-~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s 97 (115)
T TIGR02508 21 HQEANTIADWLHLKG-ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAAS 97 (115)
T ss_pred HHHHHHHHHHHhcCC-chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence 455555555555443 1122222333445667777888877777777777777766543 3455556666666666665
Q ss_pred CCCCCHHHH
Q 010496 311 GFKPDGVSF 319 (509)
Q Consensus 311 g~~p~~~~~ 319 (509)
| .|....|
T Consensus 98 g-~p~lq~F 105 (115)
T TIGR02508 98 G-DPRLQTF 105 (115)
T ss_pred C-CHHHHHH
Confidence 4 3444444
No 382
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=70.89 E-value=21 Score=35.24 Aligned_cols=83 Identities=19% Similarity=0.188 Sum_probs=60.8
Q ss_pred cCChHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 010496 365 AGRLEDALNVVENM-PMKPN--EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIR 441 (509)
Q Consensus 365 ~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 441 (509)
.|+...|...+... ..+|. .+....|.....+.|....|-.++.+.+.+....|-++..++++|.-..+.+.|++.|
T Consensus 620 ~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~ 699 (886)
T KOG4507|consen 620 VGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAF 699 (886)
T ss_pred cCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHH
Confidence 57788888877665 44442 2345556667777777888888888888877667777888888888888888888888
Q ss_pred HHHHhC
Q 010496 442 RTMKGR 447 (509)
Q Consensus 442 ~~m~~~ 447 (509)
++..+.
T Consensus 700 ~~a~~~ 705 (886)
T KOG4507|consen 700 RQALKL 705 (886)
T ss_pred HHHHhc
Confidence 877654
No 383
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=70.88 E-value=1.6e+02 Score=31.96 Aligned_cols=272 Identities=13% Similarity=0.027 Sum_probs=0.0
Q ss_pred HHHHHcCChHHHHHHHHHH------HHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCcHhHHHHHHHHH
Q 010496 188 NGFVKRGYFEEALECFREM------QISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQ-DFKDNVKVCNTLIDLY 260 (509)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~m------~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~ 260 (509)
+++...+.+++|+..|++. ++.|...--..=.+++.-....|+.+.-.+.+.+.... |-+.-+--|..-.-+|
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVY 562 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHH
Q ss_pred HhcCCHHHHHHHHHhccC--------------------------------------------------------------
Q 010496 261 SRCGCIEFARQVFQRMHK-------------------------------------------------------------- 278 (509)
Q Consensus 261 ~~~g~~~~a~~~~~~~~~-------------------------------------------------------------- 278 (509)
-+.|++++=.+.+.-..+
T Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (932)
T PRK13184 563 QRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEKISSREEEKFLEILYHKQQ 642 (932)
T ss_pred HHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHhhcc
Q ss_pred ---------CChhhHHHHHHHHHh--CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 010496 279 ---------RTLVSWNSIIVGFAV--NGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYR 347 (509)
Q Consensus 279 ---------~~~~~~~~l~~~~~~--~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 347 (509)
.....-..-+..+.. .|..---.++|++... -++-.+...+.-+.+..|.++-+.+....+.+ .
T Consensus 643 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 717 (932)
T PRK13184 643 ATLFCQLDKTPLQFRSSKMELFLSFWSGFTPFLPELFQRAWD---LRDYRALADIFYVACDLGNWEFFSQFSDILAE--V 717 (932)
T ss_pred CCceeeccCchhhhhhhhHHHHHHHHhcCchhhHHHHHHHhh---cccHHHHHHHHHHHHHhccHHHHHHHHHHHHH--H
Q ss_pred CCCCHHHHHHH-------------HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010496 348 VSPRIEHYGCI-------------VDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLD 414 (509)
Q Consensus 348 ~~~~~~~~~~l-------------i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 414 (509)
+.-...+-+.. +.++.....++++.+.+......--...+..++.-+...++.+....+.+.+....
T Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (932)
T PRK13184 718 SDEITFTESIVEQKVEELMFFLKGLEALSNKEDYEKAFKHLDNTDPTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYV 797 (932)
T ss_pred hhhccchHHHHhhhHHHHHHHHHHHHHHHccccHHHHHhhhhhCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhcc
Q ss_pred CC---CCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEE
Q 010496 415 PG---VDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGI 464 (509)
Q Consensus 415 ~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~ 464 (509)
.. ........+++|.-..++++|-+++......-...+...-++++++++
T Consensus 798 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (932)
T PRK13184 798 SEEERHDHLLVYEIQAHLWNRDLKKAYKLLNRYPLDLLLDEYSEAFVLYGCYL 850 (932)
T ss_pred CChhhhhhhhHHHHHHHHHhccHHHHHHHHHhCChhhhccccchHHHHHHHHH
No 384
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=70.58 E-value=17 Score=26.41 Aligned_cols=54 Identities=15% Similarity=0.082 Sum_probs=37.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCC----C-----CchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 394 CRTKGDIILAERLMKYLVDLDPG----V-----DSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 394 ~~~~g~~~~a~~~~~~~~~~~~~----~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
..+.|++.+|.+.+.+..+.... . ..+...++......|++++|...+++.++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45778888887777766654332 1 123445667788889999999999888653
No 385
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=69.86 E-value=1.5e+02 Score=31.30 Aligned_cols=217 Identities=14% Similarity=0.043 Sum_probs=121.2
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHh-------HHHHH-HHHHHhcCCHHHHHHHHHhccC--------CChhhHHHH
Q 010496 224 ACANVGTLGIGLWIHRYVLKQDFKDNVK-------VCNTL-IDLYSRCGCIEFARQVFQRMHK--------RTLVSWNSI 287 (509)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~l 287 (509)
......++++|..+..++...-.+|+.. .++.| ..+....|++++|.++.+.... .....+.++
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 3456788999999988877643222211 23332 2334457889999888777653 356678888
Q ss_pred HHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-----HHHhccCC--HHHHHHHHHHhHHhcCCC-C----CHHHH
Q 010496 288 IVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGAL-----TACSHAGL--IEDGLRYFDIMKKIYRVS-P----RIEHY 355 (509)
Q Consensus 288 ~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li-----~~~~~~~~--~~~a~~~~~~~~~~~~~~-~----~~~~~ 355 (509)
..+..-.|++++|..+..+..+..-.-+...+..+. ..+...|. ..+....+.......... | -..++
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 888889999999999888766542223333332222 23445663 333334444433211111 1 12334
Q ss_pred HHHHHHHHhcCChHHHHHHHHh----C-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHH
Q 010496 356 GCIVDLYSRAGRLEDALNVVEN----M-PMKPNEV----VLGSLLAACRTKGDIILAERLMKYLVDLDPGV--DSNYVLL 424 (509)
Q Consensus 356 ~~li~~~~~~g~~~~A~~~~~~----~-~~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l 424 (509)
..+..++.+ .+.+..-... - ...|... .+..|+......|+.++|...+.++......+ ...|.+.
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 444444444 3333222221 1 1223222 22366778889999999999999887754332 2223322
Q ss_pred H---H--HHHHcCCchHHHHHHHH
Q 010496 425 A---N--MYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 425 ~---~--~~~~~g~~~~A~~~~~~ 443 (509)
+ . .-...|+.+++.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 2 2 22356888877776654
No 386
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=69.35 E-value=37 Score=29.66 Aligned_cols=61 Identities=16% Similarity=-0.014 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 387 LGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+...-.++...|++-++++.....+...|.+..+|..-+.+.+..=+..+|..-|....+.
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 3334455667788888888888888888888888888888888877888888888777664
No 387
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=67.74 E-value=37 Score=26.38 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=39.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 380 MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG--VDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 380 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
.+.|.......+. |+..-+ .+.++|+.|...+.. .+..|...+..+...|++++|.++|+.
T Consensus 62 Y~nD~RylkiWi~-ya~~~~--~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 62 YKNDERYLKIWIK-YADLSS--DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp GTT-HHHHHHHHH-HHTTBS--HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred hcCCHHHHHHHHH-HHHHcc--CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 3445544433333 333222 888888888886655 444588888889999999999999875
No 388
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=66.60 E-value=1.3e+02 Score=29.08 Aligned_cols=103 Identities=17% Similarity=0.036 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEE
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIH 465 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~ 465 (509)
-...|+.-|...|++.+|.+.++++---......++.+++.+.-+.|+-..-+.+++..-+.|+ ++.+..-+
T Consensus 511 kI~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl--------IT~nQMtk 582 (645)
T KOG0403|consen 511 KIDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL--------ITTNQMTK 582 (645)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc--------eeHHHhhh
Confidence 3456778889999999999998876433333555788999999999998888888888877776 44444444
Q ss_pred EEecCCCC----CCchHHHHHHHHHHHHHHHHcCc
Q 010496 466 EFMAGDRS----HIESEHIYSMLELLSFDLKLCGY 496 (509)
Q Consensus 466 ~~~~~~~~----~~~~~~~~~~~~~~~~~m~~~g~ 496 (509)
+|-.-..+ .-.++..++.++...+.-+++|+
T Consensus 583 Gf~RV~dsl~DlsLDvPna~ekf~~~Ve~~~~~G~ 617 (645)
T KOG0403|consen 583 GFERVYDSLPDLSLDVPNAYEKFERYVEECFQNGI 617 (645)
T ss_pred hhhhhhccCcccccCCCcHHHHHHHHHHHHHHcCc
Confidence 44322221 23556677888888888888884
No 389
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=66.00 E-value=34 Score=31.32 Aligned_cols=90 Identities=19% Similarity=0.112 Sum_probs=66.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 010496 355 YGCIVDLYSRAGRLEDALNVVENM-P---MKP--NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMY 428 (509)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 428 (509)
|.-=..-|.+..++..|...|.+- . -.| +...|+.-..+-...|++..++.-..+++..+|.+..+|..=+.++
T Consensus 84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~ 163 (390)
T KOG0551|consen 84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL 163 (390)
T ss_pred HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence 333345567777888888887664 1 123 4557777777777788999999999999999999888888888888
Q ss_pred HHcCCchHHHHHHHHH
Q 010496 429 AAVGKWDGAGKIRRTM 444 (509)
Q Consensus 429 ~~~g~~~~A~~~~~~m 444 (509)
....++++|....++.
T Consensus 164 ~eLe~~~~a~nw~ee~ 179 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEG 179 (390)
T ss_pred HHHHHHHHHHHHHhhh
Confidence 8888877777666544
No 390
>PRK13342 recombination factor protein RarA; Reviewed
Probab=65.23 E-value=1.4e+02 Score=29.03 Aligned_cols=43 Identities=21% Similarity=0.225 Sum_probs=25.9
Q ss_pred HHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 010496 183 WTALLNGFVK---RGYFEEALECFREMQISGVEPDYVTIISVLNAC 225 (509)
Q Consensus 183 ~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 225 (509)
+..++.++.+ .++++.|+.++..|.+.|..|....-..+..++
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 3444555444 467888888888888877666544444444333
No 391
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=64.90 E-value=1.5e+02 Score=29.27 Aligned_cols=175 Identities=13% Similarity=0.086 Sum_probs=113.6
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLID 258 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (509)
|....-+++..+..+-.+.-+..+-.+|..-| .+...|..++.+|... ..++-..+++++.+..+ .++..-..|+.
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHHH
Confidence 55666778888888888999999999998854 5677888899999888 66778888998888763 34444555555
Q ss_pred HHHhcCCHHHHHHHHHhccCC------Ch---hhHHHHHHHHHhCCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHhc
Q 010496 259 LYSRCGCIEFARQVFQRMHKR------TL---VSWNSIIVGFAVNGFVGEALEYFNSMQK-EGFKPDGVSFTGALTACSH 328 (509)
Q Consensus 259 ~~~~~g~~~~a~~~~~~~~~~------~~---~~~~~l~~~~~~~~~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~ 328 (509)
.|.+ ++.+.+..+|.++..+ +. ..|.-+...- ..+.+..+.+..++.. .|..--...+..+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 5555 8888888888776521 11 1333333211 3455556666655554 2333344555556566777
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH
Q 010496 329 AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLY 362 (509)
Q Consensus 329 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 362 (509)
..++++|++++..+.+ .-..|...-..++.-+
T Consensus 218 ~eN~~eai~Ilk~il~--~d~k~~~ar~~~i~~l 249 (711)
T COG1747 218 NENWTEAIRILKHILE--HDEKDVWARKEIIENL 249 (711)
T ss_pred ccCHHHHHHHHHHHhh--hcchhhhHHHHHHHHH
Confidence 7778888888877774 2234444444555443
No 392
>PRK12798 chemotaxis protein; Reviewed
Probab=64.81 E-value=1.3e+02 Score=28.73 Aligned_cols=30 Identities=17% Similarity=0.068 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVDLD 414 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 414 (509)
..|..+...-.-.|+.+-|...-+++..+.
T Consensus 258 ~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 258 ELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 355555555556666666666666555544
No 393
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=64.60 E-value=2.2e+02 Score=31.16 Aligned_cols=114 Identities=14% Similarity=0.163 Sum_probs=55.6
Q ss_pred HhHHHHHHHHHHhcC--CHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 010496 250 VKVCNTLIDLYSRCG--CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACS 327 (509)
Q Consensus 250 ~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~ 327 (509)
......++.+|++.+ ++++|+....++.+.+...-...++..+-.- ++-++|+..+.. -|.. . .++-|-.
T Consensus 812 ~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~~~~~~ae~alkyl~fLv---Dvn~Ly~~ALG~---YDl~-L-al~VAq~ 883 (928)
T PF04762_consen 812 DKYLQPILTAYVKKSPPDLEEALQLIKELREEDPESAEEALKYLCFLV---DVNKLYDVALGT---YDLE-L-ALMVAQQ 883 (928)
T ss_pred hhhHHHHHHHHHhcCchhHHHHHHHHHHHHhcChHHHHHHHhHheeec---cHHHHHHHHhhh---cCHH-H-HHHHHHH
Confidence 444566777788777 7888888888777654433333333222211 122223222211 0111 1 1122223
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC
Q 010496 328 HAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM 378 (509)
Q Consensus 328 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 378 (509)
.+.++.+=+-+++++. .+++...-| -|+ ...+++++|++.+.++
T Consensus 884 SQkDPKEYLPfL~~L~---~l~~~~rry--~ID--~hLkRy~kAL~~L~~~ 927 (928)
T PF04762_consen 884 SQKDPKEYLPFLQELQ---KLPPLYRRY--KID--DHLKRYEKALRHLSAC 927 (928)
T ss_pred hccChHHHHHHHHHHH---hCChhheee--eHh--hhhCCHHHHHHHHHhh
Confidence 3456666666666666 223332211 122 2346888888777654
No 394
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=64.11 E-value=1e+02 Score=27.05 Aligned_cols=81 Identities=7% Similarity=-0.082 Sum_probs=47.7
Q ss_pred HHhcCCHHHHHHHHHhcc--CCCh-hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhccCCHHHH
Q 010496 260 YSRCGCIEFARQVFQRMH--KRTL-VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFT-GALTACSHAGLIEDG 335 (509)
Q Consensus 260 ~~~~g~~~~a~~~~~~~~--~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~li~~~~~~~~~~~a 335 (509)
|....+++.|...|.+.. .|++ .-|+.-+.++.+..+++.+..--...++ +.||..--. .+..+......++.|
T Consensus 20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~ea 97 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEA 97 (284)
T ss_pred ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHH
Confidence 444456677777666654 3444 3355566667777777776665555554 355554322 334455566677777
Q ss_pred HHHHHHh
Q 010496 336 LRYFDIM 342 (509)
Q Consensus 336 ~~~~~~~ 342 (509)
+..+.+.
T Consensus 98 I~~Lqra 104 (284)
T KOG4642|consen 98 IKVLQRA 104 (284)
T ss_pred HHHHHHH
Confidence 7777766
No 395
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=63.83 E-value=1.4e+02 Score=28.43 Aligned_cols=120 Identities=13% Similarity=0.058 Sum_probs=69.1
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHH-HHHHHHhcC-ChHHHHHHHHhCC--CCCCHHHHHHH
Q 010496 315 DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGC-IVDLYSRAG-RLEDALNVVENMP--MKPNEVVLGSL 390 (509)
Q Consensus 315 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~g-~~~~A~~~~~~~~--~~p~~~~~~~l 390 (509)
...++..+-..+.+.|+.+.|.++++++.-. +.. +...+.... +... --.++. ..-|...|.++
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~---------~e~~~~~~F~~~~~~~~~---g~~rL~~~~~eNR~fflal 106 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFA---------FERAFHPSFSPFRSNLTS---GNCRLDYRRPENRQFFLAL 106 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------HHHHHHHHhhhhhccccc---CccccCCccccchHHHHHH
Confidence 4456666666777778877777777776521 110 001110000 0000 000010 11144444443
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHhcCCC-CCchHHHHHHHHH-HcCCchHHHHHHHHHHh
Q 010496 391 ---LAACRTKGDIILAERLMKYLVDLDPG-VDSNYVLLANMYA-AVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 391 ---~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~m~~ 446 (509)
+..+.+.|-+..|.++.+-+..++|. ||-....+++.|+ +.++++--+++.+....
T Consensus 107 ~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 107 FRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 45677888899999999999999888 7776667777664 66777777777776544
No 396
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=63.45 E-value=57 Score=31.24 Aligned_cols=25 Identities=12% Similarity=0.243 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHH
Q 010496 420 NYVLLANMYAAVGKWDGAGKIRRTM 444 (509)
Q Consensus 420 ~~~~l~~~~~~~g~~~~A~~~~~~m 444 (509)
+|..++.+|...+++.+|.++|...
T Consensus 166 ~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 166 TYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555444
No 397
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.14 E-value=1.2e+02 Score=27.30 Aligned_cols=122 Identities=19% Similarity=0.132 Sum_probs=66.9
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHH-------HHHHHHHccCCHHHHHHHHHH----HHHcCCCCcHhHH
Q 010496 185 ALLNGFVKRGYFEEALECFREMQISGVEPDYVTII-------SVLNACANVGTLGIGLWIHRY----VLKQDFKDNVKVC 253 (509)
Q Consensus 185 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~-------~l~~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~ 253 (509)
.+.+-..+.+++++|+..+.+....|+..+..+.+ .+...|...|+...-.++... |.+..-+....+.
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 35566778888899999999888888877765543 455667777776554444332 2222223334445
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHhccC---CCh------hhHHHHHHHHHhCCChHHHHHHHHH
Q 010496 254 NTLIDLYSRCG-CIEFARQVFQRMHK---RTL------VSWNSIIVGFAVNGFVGEALEYFNS 306 (509)
Q Consensus 254 ~~l~~~~~~~g-~~~~a~~~~~~~~~---~~~------~~~~~l~~~~~~~~~~~~A~~~~~~ 306 (509)
..|++.+.... .++..+.+.....+ +.. ..-.-++..+.+.|.+.+|+.+...
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ 150 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINP 150 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 55555554332 34444444443321 111 1122345556666666666665443
No 398
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=61.69 E-value=37 Score=28.72 Aligned_cols=34 Identities=24% Similarity=0.164 Sum_probs=14.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010496 382 PNEVVLGSLLAACRTKGDIILAERLMKYLVDLDP 415 (509)
Q Consensus 382 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 415 (509)
|+..+|..++.++...|+.++|.+...++....|
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4444444444444444444444444444444433
No 399
>PF08967 DUF1884: Domain of unknown function (DUF1884); InterPro: IPR014418 This group represents an uncharacterised conserved protein.; PDB: 2PK8_A.
Probab=61.39 E-value=11 Score=26.15 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=16.9
Q ss_pred hHHHHHHHHHHHHHHHHcCccCCCC
Q 010496 477 SEHIYSMLELLSFDLKLCGYVPETV 501 (509)
Q Consensus 477 ~~~~~~~~~~~~~~m~~~g~~pd~~ 501 (509)
..++.+.++...++++..|++||-.
T Consensus 7 li~il~~ie~~inELk~dG~ePDiv 31 (85)
T PF08967_consen 7 LIRILELIEEKINELKEDGFEPDIV 31 (85)
T ss_dssp HHHHHHHHHHHHHHHHHTT----EE
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 4567788888899999999999953
No 400
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=61.05 E-value=1.7e+02 Score=28.73 Aligned_cols=97 Identities=6% Similarity=0.070 Sum_probs=63.4
Q ss_pred CCCHHHHH-HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHH---HhcCChHHHHHHHHhC--CCCCCHHH
Q 010496 313 KPDGVSFT-GALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLY---SRAGRLEDALNVVENM--PMKPNEVV 386 (509)
Q Consensus 313 ~p~~~~~~-~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~---~~~g~~~~A~~~~~~~--~~~p~~~~ 386 (509)
.|+..|+. .++.-+.+.|-..+|...+..+.. -.+|+...|..+|+.= ..+| ...+..+++.+ .+..|+..
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~--lpp~sl~l~r~miq~e~~~~sc~-l~~~r~~yd~a~~~fg~d~~l 532 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQE--LPPFSLDLFRKMIQFEKEQESCN-LANIREYYDRALREFGADSDL 532 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHh--CCCccHHHHHHHHHHHhhHhhcC-chHHHHHHHHHHHHhCCChHH
Confidence 45555543 455666677778888888888773 3345667777666532 2233 66777777776 23367777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 387 LGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
|...+.--...|..+.+-.++.++.+
T Consensus 533 w~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 533 WMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHhhccCCCcccccHHHHHHHH
Confidence 77777666678888888777776655
No 401
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=60.85 E-value=43 Score=28.33 Aligned_cols=56 Identities=16% Similarity=0.112 Sum_probs=40.4
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC
Q 010496 327 SHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP 382 (509)
Q Consensus 327 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p 382 (509)
....+.+......+.+.+.....|+..+|..++..+...|+.++|.++..++ ..-|
T Consensus 119 ~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 119 RLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3555665555555555544466788888888888899999999998888887 3445
No 402
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=60.16 E-value=1.4e+02 Score=27.40 Aligned_cols=146 Identities=14% Similarity=0.182 Sum_probs=75.7
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----CHHHHHHHHHHhHHhcCCCC--CHHHHHHHHHHHHhcCCh
Q 010496 297 VGEALEYFNSMQKEGFKPDGVSFTGALTACSH--AG----LIEDGLRYFDIMKKIYRVSP--RIEHYGCIVDLYSRAGRL 368 (509)
Q Consensus 297 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~--~~----~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~ 368 (509)
+++.+.+++.|.+.|+.-+..+|.+..-.... .. ....|..+|+.|++.+.+-- +-..+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44566778888888888777666553322222 22 25668888999987655432 23333333322 33333
Q ss_pred H----HHHHHHHhC---CCCC-CH-HHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCC-CchHHHHHHHHHHcCCchH
Q 010496 369 E----DALNVVENM---PMKP-NE-VVLGSLLAACRTKGD--IILAERLMKYLVDLDPGV-DSNYVLLANMYAAVGKWDG 436 (509)
Q Consensus 369 ~----~A~~~~~~~---~~~p-~~-~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~ 436 (509)
+ .++.+++.+ ++.. |. .....++..+..... ..++.++++.+.+.+..- ...|..++....-.+..++
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 3 333444443 3333 33 344443333222222 457778888888877663 3345555544434444424
Q ss_pred HHHHHHHH
Q 010496 437 AGKIRRTM 444 (509)
Q Consensus 437 A~~~~~~m 444 (509)
...-+.++
T Consensus 236 ~~~~i~ev 243 (297)
T PF13170_consen 236 IVEEIKEV 243 (297)
T ss_pred HHHHHHHH
Confidence 44444444
No 403
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=60.14 E-value=1.3e+02 Score=26.98 Aligned_cols=157 Identities=12% Similarity=0.082 Sum_probs=71.2
Q ss_pred hCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHH----HHHcCCCCCHhHHHHHHHHHHccCCH-----
Q 010496 161 RRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFRE----MQISGVEPDYVTIISVLNACANVGTL----- 231 (509)
Q Consensus 161 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~----m~~~~~~p~~~~~~~l~~~~~~~~~~----- 231 (509)
+.+++++|.+++.. =...+.+.|+...|.++-.- ..+.+.+.+......++..+...+.-
T Consensus 2 ~~kky~eAidLL~~-----------Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~ 70 (260)
T PF04190_consen 2 KQKKYDEAIDLLYS-----------GALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERK 70 (260)
T ss_dssp HTT-HHHHHHHHHH-----------HHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHH
T ss_pred ccccHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHH
Confidence 34556666665532 23334555555444443322 23335555555545555444433221
Q ss_pred HHHHHHHHHHHHcC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010496 232 GIGLWIHRYVLKQD--FKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQK 309 (509)
Q Consensus 232 ~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 309 (509)
+-..+....- +.+ -..++..+..+...|.+.|++.+|+..|-.-..++...+..++......|...+
T Consensus 71 ~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e---------- 139 (260)
T PF04190_consen 71 KFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSE---------- 139 (260)
T ss_dssp HHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS------------
T ss_pred HHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcc----------
Confidence 1112222222 222 234677888899999999999998887755543333333222222222222111
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 010496 310 EGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344 (509)
Q Consensus 310 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 344 (509)
++...-..++. |.-.++...|...+....+
T Consensus 140 ----~dlfi~RaVL~-yL~l~n~~~A~~~~~~f~~ 169 (260)
T PF04190_consen 140 ----ADLFIARAVLQ-YLCLGNLRDANELFDTFTS 169 (260)
T ss_dssp ----HHHHHHHHHHH-HHHTTBHHHHHHHHHHHHH
T ss_pred ----hhHHHHHHHHH-HHHhcCHHHHHHHHHHHHH
Confidence 12222233333 4556778888877766664
No 404
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=59.67 E-value=1.7e+02 Score=28.30 Aligned_cols=53 Identities=6% Similarity=-0.016 Sum_probs=22.7
Q ss_pred HHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHH
Q 010496 138 TVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGF 190 (509)
Q Consensus 138 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~ 190 (509)
..+.+.+..++..+-.....++.+.+..+....+...+...++....+.+.++
T Consensus 89 ~~L~~~L~d~~~~vr~aaa~ALg~i~~~~a~~~L~~~L~~~~p~vR~aal~al 141 (410)
T TIGR02270 89 RSVLAVLQAGPEGLCAGIQAALGWLGGRQAEPWLEPLLAASEPPGRAIGLAAL 141 (410)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHhcCCchHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 33333444444444444555555544444444444444434443333333333
No 405
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=59.26 E-value=33 Score=34.00 Aligned_cols=101 Identities=12% Similarity=-0.004 Sum_probs=71.2
Q ss_pred ccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 010496 328 HAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-P-MKPNEVVLGSLLAACRTKGDIILAER 405 (509)
Q Consensus 328 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~ 405 (509)
-.|+...|...+..+........+ +....|.....+.|-.-.|-.++.+. . ....+.++..+.+++....+++.|++
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~-v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~ 697 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQD-VPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALE 697 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhc-ccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHH
Confidence 357888888888877622222222 22344666667777777787777554 2 23345677888899999999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHH
Q 010496 406 LMKYLVDLDPGVDSNYVLLANMYA 429 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~~ 429 (509)
.|+.+.+..|+++..-..|...-|
T Consensus 698 ~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 698 AFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHhcCCCChhhHHHHHHHHH
Confidence 999999999998887666655443
No 406
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=59.16 E-value=1.7e+02 Score=28.03 Aligned_cols=57 Identities=11% Similarity=-0.010 Sum_probs=39.8
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHh--HHHHHHHHHH--ccCCHHHHHHHHHHHHHc
Q 010496 187 LNGFVKRGYFEEALECFREMQISGVEPDYV--TIISVLNACA--NVGTLGIGLWIHRYVLKQ 244 (509)
Q Consensus 187 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~--~~~~~~~a~~~~~~~~~~ 244 (509)
+..+.+.+++..|.++|+.+... ++++.. .+..+..+|. ..-++++|.+.++.....
T Consensus 138 a~~l~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 138 AKELFNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34455788999999999999886 555544 4445555554 445678888888877765
No 407
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=58.92 E-value=30 Score=24.54 Aligned_cols=33 Identities=15% Similarity=0.320 Sum_probs=15.5
Q ss_pred CCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCC
Q 010496 163 GDIESAVRMFDEMPVRDAISWTALLNGFVKRGY 195 (509)
Q Consensus 163 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 195 (509)
-+.++|..+++.++.+.+.+|..+..++...|+
T Consensus 44 tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~ 76 (84)
T cd08326 44 SRRDQARQLLIDLETRGKQAFPAFLSALRETGQ 76 (84)
T ss_pred CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc
Confidence 334444444444444444444444444444443
No 408
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=58.73 E-value=1.5e+02 Score=27.31 Aligned_cols=91 Identities=15% Similarity=0.178 Sum_probs=49.9
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccCC--------ChhhHHHHHH-HHHhCCChHHHHHHHHHHHHCCCCCCH----H
Q 010496 251 KVCNTLIDLYSRCGCIEFARQVFQRMHKR--------TLVSWNSIIV-GFAVNGFVGEALEYFNSMQKEGFKPDG----V 317 (509)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~l~~-~~~~~~~~~~A~~~~~~m~~~g~~p~~----~ 317 (509)
..+......||+.|+-+.|++.+++.-+. |++.+..-+. .|....-..+-++..+.+.+.|...+. .
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 44556667777777777777777665432 3333322222 223333344555555566666655443 2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 318 SFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
+|..+- |....++.+|-.+|-...
T Consensus 185 vY~Gly--~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 185 VYQGLY--CMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHH--HHHHHhHHHHHHHHHHHc
Confidence 444432 445567777777776665
No 409
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=58.59 E-value=76 Score=24.54 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=24.9
Q ss_pred HHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 010496 201 ECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLK 243 (509)
Q Consensus 201 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 243 (509)
+-++.+...++.|++......+++|.+.+|+..|.++|+-+..
T Consensus 70 kglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~ 112 (149)
T KOG4077|consen 70 KGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD 112 (149)
T ss_pred HHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 3344444445566666666666666666666666666665543
No 410
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=58.52 E-value=1.4e+02 Score=27.04 Aligned_cols=48 Identities=17% Similarity=0.037 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC---------------CchHHHHHHHHHHhCCC
Q 010496 399 DIILAERLMKYLVDLDPGVDSNYVLLANMYAAVG---------------KWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~m~~~~~ 449 (509)
+.++|...|+++.+.+. ......+. .+...| +...|...+......+.
T Consensus 206 d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 268 (292)
T COG0790 206 DLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGF 268 (292)
T ss_pred CHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCC
Confidence 66777777777766655 33444444 444444 66677777777766654
No 411
>PRK10941 hypothetical protein; Provisional
Probab=58.41 E-value=1.4e+02 Score=26.89 Aligned_cols=79 Identities=8% Similarity=-0.024 Sum_probs=47.7
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH
Q 010496 284 WNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYS 363 (509)
Q Consensus 284 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 363 (509)
.+.+-.+|.+.++++.|+++.+.+.... +.+..-+.--.-.|.+.|.+..|..-++...+...-.|+.......+....
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~~l~ 262 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIHSIE 262 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHHHHh
Confidence 3445556777777777777777777642 223334444445567777777777777777655555555555555444443
No 412
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=58.40 E-value=1.7e+02 Score=27.79 Aligned_cols=125 Identities=12% Similarity=0.122 Sum_probs=60.3
Q ss_pred CCchHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHH-HHHHhCC-CHHHHHHHHhcCCCCCHhHHHHH---HHH
Q 010496 115 RNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMI-DGYMRRG-DIESAVRMFDEMPVRDAISWTAL---LNG 189 (509)
Q Consensus 115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~-~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~l---i~~ 189 (509)
|-.+.++..+...+...|+.+.|.+++++..- ++.... ..+.... +......-+.--...|...|-++ |..
T Consensus 37 PyHidtLlqls~v~~~~gd~~~A~~lleRALf----~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~ 112 (360)
T PF04910_consen 37 PYHIDTLLQLSEVYRQQGDHAQANDLLERALF----AFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQS 112 (360)
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----HHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHH
Confidence 44455666666777777777777777666531 111000 0000000 00000000000011144444444 345
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH-HccCCHHHHHHHHHHHHH
Q 010496 190 FVKRGYFEEALECFREMQISGVEPDYVTIISVLNAC-ANVGTLGIGLWIHRYVLK 243 (509)
Q Consensus 190 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~ 243 (509)
+.+.|-+..|+++.+-+...+..-|+......|+.| .+.++++-..++.+....
T Consensus 113 L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~ 167 (360)
T PF04910_consen 113 LGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA 167 (360)
T ss_pred HHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence 677777888888777777754322444444555555 355666666666655443
No 413
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=58.11 E-value=78 Score=23.79 Aligned_cols=27 Identities=15% Similarity=0.358 Sum_probs=18.4
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010496 283 SWNSIIVGFAVNGFVGEALEYFNSMQK 309 (509)
Q Consensus 283 ~~~~l~~~~~~~~~~~~A~~~~~~m~~ 309 (509)
-|..++..|...|..++|++++.++..
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466666667777777777777776665
No 414
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=57.96 E-value=56 Score=26.00 Aligned_cols=62 Identities=26% Similarity=0.198 Sum_probs=44.0
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 010496 368 LEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVG 432 (509)
Q Consensus 368 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 432 (509)
.+.|.++.+-|+ ...............|++..|.++.+.++..+|++..+-...+.+|.+.|
T Consensus 57 ~~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 57 EEEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 356677777775 34444455666778999999999999999999998887777777766554
No 415
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=57.65 E-value=88 Score=26.10 Aligned_cols=20 Identities=10% Similarity=0.235 Sum_probs=15.1
Q ss_pred HHHhccCCHHHHHHHHHHhH
Q 010496 324 TACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~~~ 343 (509)
..|.+.|.+++|.+++++..
T Consensus 119 ~VCm~~g~Fk~A~eiLkr~~ 138 (200)
T cd00280 119 AVCMENGEFKKAEEVLKRLF 138 (200)
T ss_pred HHHHhcCchHHHHHHHHHHh
Confidence 35777788888888887777
No 416
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=57.00 E-value=15 Score=28.63 Aligned_cols=34 Identities=24% Similarity=0.325 Sum_probs=25.6
Q ss_pred HHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhh
Q 010496 55 HCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGC 90 (509)
Q Consensus 55 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 90 (509)
...-|.-..|-.+|++|++.|.+||. |+.|+..+
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 34456677788999999999988874 77777654
No 417
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=56.59 E-value=1.6e+02 Score=27.08 Aligned_cols=21 Identities=14% Similarity=0.061 Sum_probs=9.7
Q ss_pred HHHHHHhccCCHHHHHHHHHH
Q 010496 321 GALTACSHAGLIEDGLRYFDI 341 (509)
Q Consensus 321 ~li~~~~~~~~~~~a~~~~~~ 341 (509)
....-||+.|+.+.|.+.+++
T Consensus 109 ~kaeYycqigDkena~~~~~~ 129 (393)
T KOG0687|consen 109 RKAEYYCQIGDKENALEALRK 129 (393)
T ss_pred HHHHHHHHhccHHHHHHHHHH
Confidence 333444555555555444443
No 418
>PRK11619 lytic murein transglycosylase; Provisional
Probab=56.39 E-value=2.5e+02 Score=29.19 Aligned_cols=137 Identities=7% Similarity=-0.052 Sum_probs=75.2
Q ss_pred HHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhc
Q 010496 52 ISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKF 131 (509)
Q Consensus 52 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 131 (509)
.....+.|++..+..+...+...-+ ..-..|..+...+.. . ...++...+.+..-.|-....-......+.+.
T Consensus 40 A~~a~~~g~~~~~~~~~~~l~d~pL-~~yl~y~~L~~~l~~---~---~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~ 112 (644)
T PRK11619 40 IKQAWDNRQMDVVEQLMPTLKDYPL-YPYLEYRQLTQDLMN---Q---PAVQVTNFIRANPTLPPARSLQSRFVNELARR 112 (644)
T ss_pred HHHHHHCCCHHHHHHHHHhccCCCc-HhHHHHHHHHhcccc---C---CHHHHHHHHHHCCCCchHHHHHHHHHHHHHHc
Confidence 3334677888888887777653222 122233333332211 1 22245555555543444344455555667778
Q ss_pred CCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcC---CCCCHhHHHHHHHHHHHcCCh
Q 010496 132 GRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEM---PVRDAISWTALLNGFVKRGYF 196 (509)
Q Consensus 132 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~ 196 (509)
+++...++.+..- ..+...-.....+....|+.++|....+.+ ....+..++.++..+.+.|..
T Consensus 113 ~~w~~~~~~~~~~-p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~~p~~cd~l~~~~~~~g~l 179 (644)
T PRK11619 113 EDWRGLLAFSPEK-PKPVEARCNYYYAKWATGQQQEAWQGAKELWLTGKSLPNACDKLFSVWQQSGKQ 179 (644)
T ss_pred cCHHHHHHhcCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCCChHHHHHHHHHHHcCCC
Confidence 8888887743222 345555666777888888876665555433 122455666666666655543
No 419
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=56.12 E-value=2.5e+02 Score=29.05 Aligned_cols=151 Identities=11% Similarity=0.183 Sum_probs=59.9
Q ss_pred HHHHHhcCCHHHHHHHHHhcc--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhc---cC
Q 010496 257 IDLYSRCGCIEFARQVFQRMH--KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEG-FKPDGVSFTGALTACSH---AG 330 (509)
Q Consensus 257 ~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~li~~~~~---~~ 330 (509)
..++.-.|+++.|.+++-+.. ..+.+.+...+. ..|-.......-..+.... -.|...-+..||..|.+ ..
T Consensus 265 f~~LlLtgqFE~AI~~L~~~~~~~~dAVH~AIaL~---~~gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~~t 341 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYRNEFNRVDAVHFAIALA---YYGLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFEIT 341 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT--T-HHHHHHHHHHHH---HTT------------------------HHHHHHHHHHTTTTT
T ss_pred HHHHHHHhhHHHHHHHHHhhccCcccHHHHHHHHH---HcCCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHhcc
Confidence 455566788888888887722 223333322222 2222111111112222211 11122556677777764 46
Q ss_pred CHHHHHHHHHHhHHhcCCCCCHHHH-HHHHHHHHhcCChHHHH-----------HHHHh----CCCCC-CHH---HHHHH
Q 010496 331 LIEDGLRYFDIMKKIYRVSPRIEHY-GCIVDLYSRAGRLEDAL-----------NVVEN----MPMKP-NEV---VLGSL 390 (509)
Q Consensus 331 ~~~~a~~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~-----------~~~~~----~~~~p-~~~---~~~~l 390 (509)
+...|.+++-.+.. ...+.....+ .++-+.....++++.-+ .++++ +++.. +.. +....
T Consensus 342 d~~~Al~Y~~li~~-~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~~~ 420 (613)
T PF04097_consen 342 DPREALQYLYLICL-FKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIEQA 420 (613)
T ss_dssp -HHHHHHHHHGGGG-S-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-cCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHHHH
Confidence 77888888877762 2221222222 22333333333333222 12222 12222 222 23333
Q ss_pred HHHHHhcCCHHHHHHHHHHHH
Q 010496 391 LAACRTKGDIILAERLMKYLV 411 (509)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~~~ 411 (509)
..-+...|++++|..+|.-+.
T Consensus 421 A~~~e~~g~~~dAi~Ly~La~ 441 (613)
T PF04097_consen 421 AREAEERGRFEDAILLYHLAE 441 (613)
T ss_dssp HHHHHHCT-HHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHh
Confidence 445667788888888777654
No 420
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=55.22 E-value=97 Score=24.03 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCCC--CCchHHHHHHHHHHcCCchHHHHHHH
Q 010496 401 ILAERLMKYLVDLDPG--VDSNYVLLANMYAAVGKWDGAGKIRR 442 (509)
Q Consensus 401 ~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~ 442 (509)
++..++|..|...+.. .+..|...+..+-..|++.+|.++|+
T Consensus 80 ~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 80 DEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3356778888776665 34457788888888999999998885
No 421
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=55.20 E-value=36 Score=21.01 Aligned_cols=38 Identities=18% Similarity=0.147 Sum_probs=29.2
Q ss_pred HHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHh
Q 010496 52 ISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSG 89 (509)
Q Consensus 52 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~ 89 (509)
+....+.|-..++..++++|.+.|+..+...|..++..
T Consensus 9 L~~Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~~ 46 (48)
T PF11848_consen 9 LLLAKRRGLISEVKPLLDRLQQAGFRISPKLIEEILRR 46 (48)
T ss_pred HHHHHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHHH
Confidence 33445678888899999999988888888888777654
No 422
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=54.47 E-value=2e+02 Score=27.50 Aligned_cols=46 Identities=22% Similarity=0.176 Sum_probs=22.8
Q ss_pred HhHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 010496 180 AISWTALLNGFVK---RGYFEEALECFREMQISGVEPDYVTIISVLNAC 225 (509)
Q Consensus 180 ~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 225 (509)
...+..+++++.+ ..+++.|+-++.+|.+.|-.|-...-..++-++
T Consensus 246 gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~~As 294 (436)
T COG2256 246 GDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVRIAS 294 (436)
T ss_pred cchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 3344445555533 345666666666666666444433333333333
No 423
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=54.40 E-value=2e+02 Score=27.45 Aligned_cols=60 Identities=13% Similarity=0.188 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCCHhHHHHHHHHHHccCCHHHHHHHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISG--VEPDYVTIISVLNACANVGTLGIGLWIHRYV 241 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~--~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 241 (509)
.+.-+...|...|+++.|++.|.+.+.-- .+-....|..+|....-.|+|..+..+..+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A 213 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKA 213 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHH
Confidence 34445555555555555555555533321 0111223334444444445554444444333
No 424
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=53.87 E-value=23 Score=30.59 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=28.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 396 TKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 396 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
+.++.+.+.+++.++.+.-|.....|..++..--+.|+++.|.+.|++..+
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ 57 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLE 57 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHc
Confidence 445555555555555555555555555555555555555555555555544
No 425
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=53.79 E-value=89 Score=27.73 Aligned_cols=56 Identities=13% Similarity=0.048 Sum_probs=35.6
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHH----cCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010496 220 SVLNACANVGTLGIGLWIHRYVLK----QDF-KDNVKVCNTLIDLYSRCGCIEFARQVFQR 275 (509)
Q Consensus 220 ~l~~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 275 (509)
.+...|...|++++|.++|+.+.. .|. .+...+...+..++.+.|+.+....+--+
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 455567777777777777776642 232 34455666777777777777776665443
No 426
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=53.59 E-value=91 Score=31.68 Aligned_cols=72 Identities=11% Similarity=0.136 Sum_probs=30.7
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcC--CCCCHHHHHHHHHHHHhcCChH------HHHHHHHhCCCCCCHHHHHHHHH
Q 010496 321 GALTACSHAGLIEDGLRYFDIMKKIYR--VSPRIEHYGCIVDLYSRAGRLE------DALNVVENMPMKPNEVVLGSLLA 392 (509)
Q Consensus 321 ~li~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~------~A~~~~~~~~~~p~~~~~~~l~~ 392 (509)
.|+.+|...|++..+.++++.... .+ -+.-...||..|+.+.+.|.++ .|.+.++...+.-|..||..|+.
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~-~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~ 111 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFID-HNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhc-CCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 344455555555555555554441 11 0111333444444444444432 33444444444444444444443
Q ss_pred H
Q 010496 393 A 393 (509)
Q Consensus 393 ~ 393 (509)
+
T Consensus 112 ~ 112 (1117)
T COG5108 112 A 112 (1117)
T ss_pred h
Confidence 3
No 427
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=53.13 E-value=1.9e+02 Score=26.86 Aligned_cols=79 Identities=10% Similarity=0.047 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh---cCCHHHHHHH
Q 010496 196 FEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR---CGCIEFARQV 272 (509)
Q Consensus 196 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~ 272 (509)
.+.-+.++++..+.+ +.+.......+..+.+..+.+...+-+++++... +-+...|...+..... .-.+.....+
T Consensus 47 ~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~ 124 (321)
T PF08424_consen 47 AERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDV 124 (321)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHH
Confidence 456677777777763 3456666677888888888888888888888774 4567777776665544 2235555555
Q ss_pred HHhc
Q 010496 273 FQRM 276 (509)
Q Consensus 273 ~~~~ 276 (509)
|.+.
T Consensus 125 y~~~ 128 (321)
T PF08424_consen 125 YEKC 128 (321)
T ss_pred HHHH
Confidence 5443
No 428
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=52.98 E-value=96 Score=23.30 Aligned_cols=27 Identities=19% Similarity=0.425 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQI 208 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~ 208 (509)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466777777777777777777777665
No 429
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=52.39 E-value=1.1e+02 Score=23.76 Aligned_cols=95 Identities=13% Similarity=0.153 Sum_probs=59.1
Q ss_pred CccchHHHHHHHHc----CCChhHHHHHHHHHhhC-----CCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCC
Q 010496 44 PTVQWTSSISRHCR----SGRIAEAALEFTRMTLH-----GTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLD 114 (509)
Q Consensus 44 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~ 114 (509)
+...|...|..... .+.-.....++++.... ...-|.. |..+--.++.. ...+..+|..|...|+-
T Consensus 21 PL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~R-ylkiWi~ya~~----~~~~~~if~~l~~~~IG 95 (126)
T PF08311_consen 21 PLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDER-YLKIWIKYADL----SSDPREIFKFLYSKGIG 95 (126)
T ss_dssp CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HH-HHHHHHHHHTT----BSHHHHHHHHHHHHTTS
T ss_pred ChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHH-HHHHHHHHHHH----ccCHHHHHHHHHHcCcc
Confidence 34555555555443 24455556666665542 1121332 33333334433 33888899999998888
Q ss_pred CCchHHHHHHHHHHHhcCCchHHHHHHHh
Q 010496 115 RNNVMVGTALLDMYAKFGRMDLATVVFDA 143 (509)
Q Consensus 115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 143 (509)
...+..|..-+..+...|++++|.++|+.
T Consensus 96 ~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 96 TKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp TTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 77788888888999999999999988864
No 430
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=52.24 E-value=1.2e+02 Score=24.23 Aligned_cols=83 Identities=4% Similarity=0.009 Sum_probs=63.9
Q ss_pred cchHHHHHHHHcCCChhHHHHHHHHHhhCC-----CCCCcccHHHHHHhhcCCCccc-hhHHHHHHHHHHHhCCCCCchH
Q 010496 46 VQWTSSISRHCRSGRIAEAALEFTRMTLHG-----TNPNHITFITLLSGCADFPSQC-LFLGAMIHGLVCKLGLDRNNVM 119 (509)
Q Consensus 46 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~ 119 (509)
...|.++.-.+..+++...+.+++.+.... -.-+..+|..++.+.+.. .. .-.+..++..+.+.+...+ +.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnS--sSaK~~~~~Lf~~Lk~~~~~~t-~~ 116 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNS--SSAKLTSLTLFNFLKKNDIEFT-PS 116 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccC--hHHHHHHHHHHHHHHHcCCCCC-HH
Confidence 345888888888999999999988884311 134677899999999776 44 5567888999998888777 88
Q ss_pred HHHHHHHHHHhc
Q 010496 120 VGTALLDMYAKF 131 (509)
Q Consensus 120 ~~~~l~~~~~~~ 131 (509)
-|..++.++.+.
T Consensus 117 dy~~li~~~l~g 128 (145)
T PF13762_consen 117 DYSCLIKAALRG 128 (145)
T ss_pred HHHHHHHHHHcC
Confidence 899999887665
No 431
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=52.07 E-value=32 Score=31.16 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTI 218 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~ 218 (509)
-|+..|....+.|++++|+.++++.++.|+.--..+|
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tF 295 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTF 295 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHH
Confidence 3567888888888888888888888888765444444
No 432
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=51.90 E-value=3e+02 Score=28.72 Aligned_cols=183 Identities=12% Similarity=0.093 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHcCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHHhccC-CCh----------hhHHHHHHHHHhCCCh
Q 010496 232 GIGLWIHRYVLKQDFKDN---VKVCNTLIDLYSRCGCIEFARQVFQRMHK-RTL----------VSWNSIIVGFAVNGFV 297 (509)
Q Consensus 232 ~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~----------~~~~~l~~~~~~~~~~ 297 (509)
++-..++.+|..+--.|+ ..+...++-.|....+++...++.+.+.. ||. ..|...++--.+.|+-
T Consensus 180 ~~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~iP~t~~vve~~nv~f~YaFALNRRNr~GDR 259 (1226)
T KOG4279|consen 180 DQLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRIPDTLKVVETHNVRFHYAFALNRRNRPGDR 259 (1226)
T ss_pred HHHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhCcchhhhhccCceEEEeeehhcccCCCccH
Confidence 444456777776533333 45566677788888888888888877763 211 1233333334456788
Q ss_pred HHHHHHHHHHHHCC--CCCCHHH-----HHHH--HHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC-C
Q 010496 298 GEALEYFNSMQKEG--FKPDGVS-----FTGA--LTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAG-R 367 (509)
Q Consensus 298 ~~A~~~~~~m~~~g--~~p~~~~-----~~~l--i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~ 367 (509)
++|+...-.+++.. +.||... |.-+ -..|...+..+.|.+.|++.- .+.|+...=-.+...+...| .
T Consensus 260 akAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaF---eveP~~~sGIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 260 AKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAF---EVEPLEYSGINLATLLRAAGEH 336 (1226)
T ss_pred HHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHh---ccCchhhccccHHHHHHHhhhh
Confidence 88888877777642 4555432 2211 112344556777888888776 44555433222222222222 2
Q ss_pred hHHHHHHH------Hh-CCCCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010496 368 LEDALNVV------EN-MPMKPNEV------VLGSLLAACRTKGDIILAERLMKYLVDLDPGV 417 (509)
Q Consensus 368 ~~~A~~~~------~~-~~~~p~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 417 (509)
++...++- .. ++.+-... -....+.+-.-.+++.+|.+..+.|.++.|..
T Consensus 337 Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~P~ 399 (1226)
T KOG4279|consen 337 FENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKPPV 399 (1226)
T ss_pred ccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCCce
Confidence 22222111 00 01111100 11222334445667777777777777776653
No 433
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=51.80 E-value=2e+02 Score=27.69 Aligned_cols=55 Identities=9% Similarity=0.200 Sum_probs=34.3
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCC-----------CCHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010496 153 NAMIDGYMRRGDIESAVRMFDEMPV-----------RDAISWTALLNGFVKRGYFEEALECFREMQ 207 (509)
Q Consensus 153 ~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 207 (509)
..|+..++-.||+..|+++++.+.- -...+|..+.-+|.-.+++.+|.+.|....
T Consensus 126 igLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 126 IGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556666777777666665531 134456666677777777777777776654
No 434
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=51.18 E-value=1.1e+02 Score=25.63 Aligned_cols=65 Identities=17% Similarity=0.209 Sum_probs=33.7
Q ss_pred HHHHHHHHHHhHHhcCCCCC-HHH-----HHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 010496 332 IEDGLRYFDIMKKIYRVSPR-IEH-----YGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRT 396 (509)
Q Consensus 332 ~~~a~~~~~~~~~~~~~~~~-~~~-----~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~ 396 (509)
.+.|..+|+.+.+....+-+ ... -...+-.|.+.|.+++|.+++++.--.|+......-+....+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~d~~~~~~r~kL~~II~ 155 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFSDPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 45666777776643322101 111 122334577778888888888776335555444444433333
No 435
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=50.15 E-value=1.3e+02 Score=24.03 Aligned_cols=76 Identities=12% Similarity=0.152 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcc---------CCChhhHHHHHHHHHhCCC-hHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010496 253 CNTLIDLYSRCGCIEFARQVFQRMH---------KRTLVSWNSIIVGFAVNGF-VGEALEYFNSMQKEGFKPDGVSFTGA 322 (509)
Q Consensus 253 ~~~l~~~~~~~g~~~~a~~~~~~~~---------~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~l 322 (509)
.+.++.-....+++.....+++.+. ..+...|..++.+..+..- ---+..+|.-|.+.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 3444444444455555555544442 1233455555555544443 22344455555555555555666666
Q ss_pred HHHHhc
Q 010496 323 LTACSH 328 (509)
Q Consensus 323 i~~~~~ 328 (509)
+.++.+
T Consensus 122 i~~~l~ 127 (145)
T PF13762_consen 122 IKAALR 127 (145)
T ss_pred HHHHHc
Confidence 655544
No 436
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=50.01 E-value=2.7e+02 Score=27.82 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=19.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcc
Q 010496 253 CNTLIDLYSRCGCIEFARQVFQRMH 277 (509)
Q Consensus 253 ~~~l~~~~~~~g~~~~a~~~~~~~~ 277 (509)
...++.-|.+.+++++|..++..|.
T Consensus 411 ~~eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 411 LVELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhCC
Confidence 3456677888888888888888886
No 437
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=49.42 E-value=2.1e+02 Score=26.20 Aligned_cols=41 Identities=7% Similarity=0.028 Sum_probs=19.0
Q ss_pred HHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 010496 237 IHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH 277 (509)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 277 (509)
+++.+.+.++.|.-..+..+.-.+.+.=.+..++.+++.+.
T Consensus 265 L~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~ 305 (370)
T KOG4567|consen 265 LWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLL 305 (370)
T ss_pred HHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHh
Confidence 44444444444444444444444444444444444444443
No 438
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=48.85 E-value=33 Score=30.96 Aligned_cols=59 Identities=19% Similarity=0.350 Sum_probs=35.7
Q ss_pred HhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 010496 363 SRAGRLEDALNVVENM-PMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNY 421 (509)
Q Consensus 363 ~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 421 (509)
.+.|+.++|..+|+.. .+.|+ +..+..+....-..+++-+|-.+|-+++...|.+..++
T Consensus 127 ~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseAL 187 (472)
T KOG3824|consen 127 RKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEAL 187 (472)
T ss_pred HhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHH
Confidence 3567777777777664 45553 33444444444455667777777777777777665543
No 439
>PRK13342 recombination factor protein RarA; Reviewed
Probab=48.75 E-value=2.6e+02 Score=27.12 Aligned_cols=40 Identities=18% Similarity=0.141 Sum_probs=23.7
Q ss_pred HHHHHHHHh---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010496 285 NSIIVGFAV---NGFVGEALEYFNSMQKEGFKPDGVSFTGALT 324 (509)
Q Consensus 285 ~~l~~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 324 (509)
..+++++.+ .++.+.|+.++..|.+.|..|....-..++.
T Consensus 231 ~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~ 273 (413)
T PRK13342 231 YDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVII 273 (413)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 334444443 4677778888888887777665444333333
No 440
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=48.65 E-value=1e+02 Score=24.69 Aligned_cols=62 Identities=8% Similarity=0.040 Sum_probs=41.5
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 010496 202 CFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG 264 (509)
Q Consensus 202 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 264 (509)
+.+.+.+.|++++..- ..++..+...++.-.|..+++.+.+.+.+.+..|...-++.+...|
T Consensus 8 ~~~~lk~~glr~T~qR-~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQR-LAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHHH-HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 4455666777766543 3556677777777888889998888876666655555556666555
No 441
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=48.06 E-value=52 Score=21.70 Aligned_cols=22 Identities=9% Similarity=-0.009 Sum_probs=9.6
Q ss_pred HHHHHHccCCHHHHHHHHHHHH
Q 010496 221 VLNACANVGTLGIGLWIHRYVL 242 (509)
Q Consensus 221 l~~~~~~~~~~~~a~~~~~~~~ 242 (509)
++.++...|++++|.++...+.
T Consensus 29 vI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 29 VIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3444444444444444444433
No 442
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=47.98 E-value=65 Score=19.88 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=15.3
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 010496 191 VKRGYFEEALECFREMQISGVEPDYVTIISV 221 (509)
Q Consensus 191 ~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 221 (509)
.+.|-..++..++++|.+.|+.-+...|..+
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~ 43 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEI 43 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHH
Confidence 3444445555555555555554444444433
No 443
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=47.71 E-value=2.3e+02 Score=26.15 Aligned_cols=110 Identities=16% Similarity=0.009 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhHHhcCC---CCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010496 332 IEDGLRYFDIMKKIYRV---SPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMK 408 (509)
Q Consensus 332 ~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 408 (509)
.+.|.+.|+.......- ..+......+.....+.|..+.-..+++.....++...-..++.+++...+.+...++++
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k~~~l~aLa~~~d~~~~~~~l~ 225 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEKRRLLSALACSPDPELLKRLLD 225 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHHHHHHHHHTT-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHHHHHHHhhhccCCHHHHHHHHH
Confidence 56677888887742111 335555666677777888776666666666555677788888888888889888889999
Q ss_pred HHHhcC-CCCCchHHHHHHHHHHcCCc--hHHHHHHH
Q 010496 409 YLVDLD-PGVDSNYVLLANMYAAVGKW--DGAGKIRR 442 (509)
Q Consensus 409 ~~~~~~-~~~~~~~~~l~~~~~~~g~~--~~A~~~~~ 442 (509)
.+...+ ..+.. ...++..+...+.. +.+.+.++
T Consensus 226 ~~l~~~~v~~~d-~~~~~~~~~~~~~~~~~~~~~~~~ 261 (324)
T PF11838_consen 226 LLLSNDKVRSQD-IRYVLAGLASSNPVGRDLAWEFFK 261 (324)
T ss_dssp HHHCTSTS-TTT-HHHHHHHHH-CSTTCHHHHHHHHH
T ss_pred HHcCCcccccHH-HHHHHHHHhcCChhhHHHHHHHHH
Confidence 888854 22333 34444444433333 55555543
No 444
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=47.61 E-value=42 Score=30.39 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010496 283 SWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTG 321 (509)
Q Consensus 283 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 321 (509)
-|+..|....+.|++++|+.++++..+.|..--..+|..
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik 297 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFIS 297 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 356777777777888888888888877776654555543
No 445
>cd08326 CARD_CASP9 Caspase activation and recruitment domain of Caspase-9. Caspase activation and recruitment domain (CARD) similar to that found in caspase-9 (CASP9, MCH6, APAF3), which interacts with the CARD of apoptotic protease-activating factor 1 (APAF-1). Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Initiator caspases are the first to be activated following death- or inflammation-inducing signals. Caspase-9 is the initiator caspase associated with the intrinsic or mitochondrial pathway of apoptosis, induced by many pro-apoptotic signals. Together with APAF-1, it forms the heptameric 'apoptosome' in response to the release of cytochrome c from mitochondria. Activated caspase-9 cleaves and activates downstream effector caspases, like caspase-3, caspase-6, and caspase-7, resulting in apoptosis. In general, CARDs are death domains (DDs) associated with caspases. They are known to be important in the signaling pathways for apopt
Probab=46.88 E-value=89 Score=22.19 Aligned_cols=61 Identities=13% Similarity=0.167 Sum_probs=39.0
Q ss_pred HHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHH
Q 010496 103 MIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESA 168 (509)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 168 (509)
.++..+.+.|+-- ....-.......+.+.|.++++.++.+.+..|..+.+++...|...-|
T Consensus 20 ~v~~~L~~~~Vlt-----~~~~e~I~~~~tr~~q~~~LLd~L~~RG~~AF~~F~~aL~~~~~~~LA 80 (84)
T cd08326 20 YLWDHLLSRGVFT-----PDMIEEIQAAGSRRDQARQLLIDLETRGKQAFPAFLSALRETGQTDLA 80 (84)
T ss_pred HHHHHHHhcCCCC-----HHHHHHHHcCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCchHHH
Confidence 3555555555322 222333334556678888888888888888888888888777754433
No 446
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=46.71 E-value=50 Score=31.96 Aligned_cols=88 Identities=15% Similarity=0.098 Sum_probs=48.3
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHH-HHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 010496 187 LNGFVKRGYFEEALECFREMQISGVEPDYVTI-ISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGC 265 (509)
Q Consensus 187 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 265 (509)
+..+.+.+.++.|..++.+.++. .||...| ..-..++.+.+++..|..=...+++.. +.....|..-..++.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~d-P~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELD-PTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcC-chhhheeeeccHHHHhHHH
Confidence 34455566677777777777663 5544333 333356667777777766666666654 3223333333444444455
Q ss_pred HHHHHHHHHhcc
Q 010496 266 IEFARQVFQRMH 277 (509)
Q Consensus 266 ~~~a~~~~~~~~ 277 (509)
+.+|+..|+...
T Consensus 88 ~~~A~~~l~~~~ 99 (476)
T KOG0376|consen 88 FKKALLDLEKVK 99 (476)
T ss_pred HHHHHHHHHHhh
Confidence 555555555543
No 447
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=46.38 E-value=81 Score=23.12 Aligned_cols=44 Identities=16% Similarity=0.069 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcC-CCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010496 401 ILAERLMKYLVDLD-PGVDSNYVLLANMYAAVGKWDGAGKIRRTM 444 (509)
Q Consensus 401 ~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 444 (509)
...++.++++...+ +.+|.....|+..|.+.|+-+.|.+-|+.=
T Consensus 54 ~~le~~~ek~~ak~~~vpPG~HAhLGlLys~~G~~e~a~~eFetE 98 (121)
T COG4259 54 AALEKYLEKIGAKNGAVPPGYHAHLGLLYSNSGKDEQAVREFETE 98 (121)
T ss_pred HHHHHHHHHHhhcCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHh
Confidence 33344555554433 346667778888888888888888877753
No 448
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=46.36 E-value=2.1e+02 Score=25.24 Aligned_cols=157 Identities=12% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH-HccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-
Q 010496 186 LLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNAC-ANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRC- 263 (509)
Q Consensus 186 li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 263 (509)
++..+-+.|+++++...++++...+...+..-.+.+..+| ...|....+++++..+.+..-.........++.-|.+.
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~ki 86 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKI 86 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHH
Q ss_pred -----CCHHHHHHHHHhccCCChhhHHHHHHHHHhCCC-----------------hHHHHHHHHHHHH---CCCCCCHHH
Q 010496 264 -----GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF-----------------VGEALEYFNSMQK---EGFKPDGVS 318 (509)
Q Consensus 264 -----g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~m~~---~g~~p~~~~ 318 (509)
.--.+.+.+++...-|....-...+-.+-..|+ .+.|.+.|++... ..++|...+
T Consensus 87 e~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~ 166 (236)
T PF00244_consen 87 EDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPL 166 (236)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcH
Q ss_pred HHHHHHHHh-----ccCCHHHHHHHHHHh
Q 010496 319 FTGALTACS-----HAGLIEDGLRYFDIM 342 (509)
Q Consensus 319 ~~~li~~~~-----~~~~~~~a~~~~~~~ 342 (509)
+..|+--++ -.|+.++|.++-+..
T Consensus 167 rLgl~LN~svF~yei~~~~~~A~~ia~~a 195 (236)
T PF00244_consen 167 RLGLALNYSVFYYEILNDPEKAIEIAKQA 195 (236)
T ss_dssp HHHHHHHHHHHHHHTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHH
No 449
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=46.05 E-value=33 Score=22.62 Aligned_cols=27 Identities=15% Similarity=0.223 Sum_probs=19.0
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 420 NYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 420 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
....++.+|...|++++|.++++++.+
T Consensus 25 NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 25 NHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 355677778888888888888777654
No 450
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=45.62 E-value=2.3e+02 Score=25.44 Aligned_cols=153 Identities=16% Similarity=0.124 Sum_probs=84.9
Q ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCH-----HHHHHHHHHhHHhcCCCCCHHHHHHH
Q 010496 284 WNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLI-----EDGLRYFDIMKKIYRVSPRIEHYGCI 358 (509)
Q Consensus 284 ~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~~l 358 (509)
.+.++..+.+.+....|..+.+.+... +--..+...++......... ......+....+--...| .|..+
T Consensus 85 L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll~~f~---~~l~I 159 (258)
T PF07064_consen 85 LHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLLQEFP---EYLEI 159 (258)
T ss_pred hHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHcCc---chHHH
Confidence 445666666666666677666666542 22234444444432221111 111222222221101112 24445
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-------chHHHHHHHHHHc
Q 010496 359 VDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD-------SNYVLLANMYAAV 431 (509)
Q Consensus 359 i~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~ 431 (509)
+..|.|.-+...-..+|+..+ .| ..|+.-|.+.|+++.|-.++--+-..+..+. ..-..++......
T Consensus 160 vv~C~RKtE~~~W~~LF~~lg-~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~ 233 (258)
T PF07064_consen 160 VVNCARKTEVRYWPYLFDYLG-SP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALES 233 (258)
T ss_pred HHHHHHhhHHHHHHHHHHhcC-CH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhc
Confidence 555666656655566677665 33 2567778889999999887776655443322 1244566777788
Q ss_pred CCchHHHHHHHHHHhC
Q 010496 432 GKWDGAGKIRRTMKGR 447 (509)
Q Consensus 432 g~~~~A~~~~~~m~~~ 447 (509)
++|+-+.++.+-+...
T Consensus 234 ~~w~Lc~eL~RFL~~l 249 (258)
T PF07064_consen 234 GDWDLCFELVRFLKAL 249 (258)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 9999999998877654
No 451
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=45.52 E-value=2.1e+02 Score=24.94 Aligned_cols=98 Identities=10% Similarity=0.085 Sum_probs=50.0
Q ss_pred CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC---CHHHH--HHHHHHHHhcCChHHHHHHHHhCC---CCCC
Q 010496 312 FKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP---RIEHY--GCIVDLYSRAGRLEDALNVVENMP---MKPN 383 (509)
Q Consensus 312 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~--~~li~~~~~~g~~~~A~~~~~~~~---~~p~ 383 (509)
+.+...-++.|+--|.-...+.+|...|..-. ++.| +...+ ..-|......|+.++|++.+..+. +.-|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~---~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAKES---GIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcccc---CCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc
Confidence 45555566665555554444544544444332 4443 22222 234556677777777777777762 2233
Q ss_pred HHHHHHHHH----HHHhcCCHHHHHHHHHHHHh
Q 010496 384 EVVLGSLLA----ACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 384 ~~~~~~l~~----~~~~~g~~~~a~~~~~~~~~ 412 (509)
...+-.|.. -..+.|..++|+++.+.=+.
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA 131 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQTKLA 131 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcc
Confidence 322222221 24566666777666664433
No 452
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=45.35 E-value=1.4e+02 Score=23.12 Aligned_cols=42 Identities=12% Similarity=0.187 Sum_probs=20.1
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHH
Q 010496 101 GAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFD 142 (509)
Q Consensus 101 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 142 (509)
...+|..|...++-..-...|...+..+-..|++.+|.++|+
T Consensus 82 p~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 82 PRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555555554444434444444444445555555555443
No 453
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=45.22 E-value=3.2e+02 Score=27.05 Aligned_cols=239 Identities=9% Similarity=0.027 Sum_probs=121.8
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHccC------CHHHHHHHHHHHHHcC-C-CCcHhHHHHHHHHHHhcCCHH-HH
Q 010496 199 ALECFREMQISGVEPDYVTIISVLNACANVG------TLGIGLWIHRYVLKQD-F-KDNVKVCNTLIDLYSRCGCIE-FA 269 (509)
Q Consensus 199 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~-~a 269 (509)
...+|++..+. .|+...+...|..|...- .......+++...+.+ . +.....|..+...++...... .|
T Consensus 301 ~~~v~ee~v~~--l~t~sm~e~YI~~~lE~~~~~r~~~I~h~~~~~~~~~~~~~l~~~~~~~ys~~~l~~~t~~~~r~~a 378 (568)
T KOG2396|consen 301 CCAVYEEAVKT--LPTESMWECYITFCLERFTFLRGKRILHTMCVFRKAHELKLLSECLYKQYSVLLLCLNTLNEAREVA 378 (568)
T ss_pred HHHHHHHHHHH--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHhccchHhHHH
Confidence 34555555542 345555555555543221 2233334444444332 1 233445555555555554433 34
Q ss_pred HHHHHhccCCChhhHHHHHHHHHhCC-ChHHH-HHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHH--HHHHHHHhHH
Q 010496 270 RQVFQRMHKRTLVSWNSIIVGFAVNG-FVGEA-LEYFNSMQKEGFKPDGVSFTGALTACSHAGL-IED--GLRYFDIMKK 344 (509)
Q Consensus 270 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A-~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-~~~--a~~~~~~~~~ 344 (509)
..+..+....+...|..-++...... +++-- ..++......-..+-...+.... .++ .+. -..++..+.
T Consensus 379 ~~l~~e~f~~s~k~~~~kl~~~~~s~sD~q~~f~~l~n~~r~~~~s~~~~~w~s~~-----~~dsl~~~~~~~Ii~a~~- 452 (568)
T KOG2396|consen 379 VKLTTELFRDSGKMWQLKLQVLIESKSDFQMLFEELFNHLRKQVCSELLISWASAS-----EGDSLQEDTLDLIISALL- 452 (568)
T ss_pred HHhhHHHhcchHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhcchhHHHHHHHh-----hccchhHHHHHHHHHHHH-
Confidence 44444555556666665555554321 22111 11222222211112222222222 111 111 112223333
Q ss_pred hcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCCc
Q 010496 345 IYRVSPRIE-HYGCIVDLYSRAGRLEDALNVVENMP-MK-PNEVVLGSLLAACR--TKGDIILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 345 ~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~~-~~-p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~ 419 (509)
..+ .|+.. .-+.+++-+.+.|-..+|...+..+. .+ |+...|..++..-. ..-+...+.++|+.+......++.
T Consensus 453 s~~-~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~fg~d~~ 531 (568)
T KOG2396|consen 453 SVI-GADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREFGADSD 531 (568)
T ss_pred Hhc-CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHhCCChH
Confidence 222 34333 33567777888888999999988873 33 36667777775421 122377788888888876557778
Q ss_pred hHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 420 NYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 420 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.|......-...|+.+.+-.++-+..+
T Consensus 532 lw~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 532 LWMDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHHHhhccCCCcccccHHHHHHHH
Confidence 888777777788888887777665543
No 454
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=44.32 E-value=3.1e+02 Score=26.64 Aligned_cols=232 Identities=9% Similarity=-0.013 Sum_probs=133.5
Q ss_pred HHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhH-HHHHHHHHHHhCCCCCchHHHHHHHHHHHh
Q 010496 52 ISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFL-GAMIHGLVCKLGLDRNNVMVGTALLDMYAK 130 (509)
Q Consensus 52 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 130 (509)
|.++...| +.+...+....... ++...+.....++... +... ...+...+ -.++ ..+....+.++.+
T Consensus 45 LdgL~~~G--~~a~~~L~~aL~~d--~~~ev~~~aa~al~~~---~~~~~~~~L~~~L----~d~~-~~vr~aaa~ALg~ 112 (410)
T TIGR02270 45 VDGLVLAG--KAATELLVSALAEA--DEPGRVACAALALLAQ---EDALDLRSVLAVL----QAGP-EGLCAGIQAALGW 112 (410)
T ss_pred HHHHHHhh--HhHHHHHHHHHhhC--CChhHHHHHHHHHhcc---CChHHHHHHHHHh----cCCC-HHHHHHHHHHHhc
Confidence 77777788 56777777776432 3333344444444332 2222 22222222 2344 6688899999999
Q ss_pred cCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 010496 131 FGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISG 210 (509)
Q Consensus 131 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~ 210 (509)
.+.......+...+...++......+.++...+. +-...+..-+...+...-..-+.++...+.. .+...+..+..
T Consensus 113 i~~~~a~~~L~~~L~~~~p~vR~aal~al~~r~~-~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~-~a~~~L~~al~-- 188 (410)
T TIGR02270 113 LGGRQAEPWLEPLLAASEPPGRAIGLAALGAHRH-DPGPALEAALTHEDALVRAAALRALGELPRR-LSESTLRLYLR-- 188 (410)
T ss_pred CCchHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChHHHHHHHhcCCCHHHHHHHHHHHHhhccc-cchHHHHHHHc--
Confidence 9998888888888877888777777777776542 2222333334466777777777888777764 44444555543
Q ss_pred CCCCHhHHHHHHHHHHccCCHHHHHHHHHH-HHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHH
Q 010496 211 VEPDYVTIISVLNACANVGTLGIGLWIHRY-VLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIV 289 (509)
Q Consensus 211 ~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 289 (509)
.+|...-...+.+....|. ..|...+.. ..+.| ......+.......|. .++.+.+..+.+... +-...+.
T Consensus 189 -d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g----~~~~~~l~~~lal~~~-~~a~~~L~~ll~d~~-vr~~a~~ 260 (410)
T TIGR02270 189 -DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEG----GPHRQRLLVLLAVAGG-PDAQAWLRELLQAAA-TRREALR 260 (410)
T ss_pred -CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccC----ccHHHHHHHHHHhCCc-hhHHHHHHHHhcChh-hHHHHHH
Confidence 4566666666777777777 555555554 33333 2222333333333333 355555555543322 5555666
Q ss_pred HHHhCCChHHHHHHHHHH
Q 010496 290 GFAVNGFVGEALEYFNSM 307 (509)
Q Consensus 290 ~~~~~~~~~~A~~~~~~m 307 (509)
++.+.|+...+.-+.+.|
T Consensus 261 AlG~lg~p~av~~L~~~l 278 (410)
T TIGR02270 261 AVGLVGDVEAAPWCLEAM 278 (410)
T ss_pred HHHHcCCcchHHHHHHHh
Confidence 666777766554444444
No 455
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=44.29 E-value=4.5e+02 Score=28.48 Aligned_cols=72 Identities=13% Similarity=-0.005 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 010496 298 GEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLE 369 (509)
Q Consensus 298 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 369 (509)
+.-.+.|.++...--.-|..++..-.......|++..|.+++.++.+..+-.++...|..++..+...|.-.
T Consensus 1213 d~~~e~y~el~kw~d~~dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lgw~H 1284 (1304)
T KOG1114|consen 1213 DSYNENYQELLKWLDASDSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLGWNH 1284 (1304)
T ss_pred hhHHHHHHHHHHHhhcCCchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhCchH
Confidence 344455555554312224444444444555667888888888888776677777777777776666666543
No 456
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=43.86 E-value=2.6e+02 Score=25.65 Aligned_cols=90 Identities=7% Similarity=0.073 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHH----------hCCCHHHHHH
Q 010496 101 GAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYM----------RRGDIESAVR 170 (509)
Q Consensus 101 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~----------~~~~~~~A~~ 170 (509)
-.++++.+.+.++.|. -..+.-+.-.+.+.=.+..++.+++.+...... |..++..|+ -.|++..-.+
T Consensus 262 D~EL~~~L~~~~i~Pq-fyaFRWitLLLsQEF~lpDvi~lWDsl~sD~~r-fd~Ll~iCcsmlil~Re~il~~DF~~nmk 339 (370)
T KOG4567|consen 262 DEELWRHLEEKEIHPQ-FYAFRWITLLLSQEFPLPDVIRLWDSLLSDPQR-FDFLLYICCSMLILVRERILEGDFTVNMK 339 (370)
T ss_pred hHHHHHHHHhcCCCcc-chhHHHHHHHHhccCCchhHHHHHHHHhcChhh-hHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 3568888888888887 888877777888888889999999988753222 555555554 3689999999
Q ss_pred HHhcCCCCCHhHHHHHHHHHHH
Q 010496 171 MFDEMPVRDAISWTALLNGFVK 192 (509)
Q Consensus 171 ~~~~~~~~~~~~~~~li~~~~~ 192 (509)
+++.-+..|....-++...+..
T Consensus 340 LLQ~yp~tdi~~~l~~A~~Lr~ 361 (370)
T KOG4567|consen 340 LLQNYPTTDISKMLAVADSLRD 361 (370)
T ss_pred HHhcCCCCCHHHHHHHHHHHHh
Confidence 9988877777666555555443
No 457
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=43.63 E-value=1e+02 Score=27.56 Aligned_cols=60 Identities=23% Similarity=0.126 Sum_probs=51.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 388 GSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
..+-..+.+.++++.|....++.+..+|.++.-..--+.+|.+.|.+.-|++-++...+.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~ 244 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEH 244 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHh
Confidence 334456788899999999999999999999888888999999999999999988886665
No 458
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.26 E-value=2.4e+02 Score=25.00 Aligned_cols=91 Identities=18% Similarity=0.074 Sum_probs=40.5
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc------CCCCCHhHH-----------HHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 010496 187 LNGFVKRGYFEEALECFREMQIS------GVEPDYVTI-----------ISVLNACANVGTLGIGLWIHRYVLKQDFKDN 249 (509)
Q Consensus 187 i~~~~~~~~~~~A~~~~~~m~~~------~~~p~~~~~-----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 249 (509)
..-+.+.|++.+|...|.+.+.. .-+|...-| .....++...|++-++++.-.+++... +.+
T Consensus 185 GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~-~~n 263 (329)
T KOG0545|consen 185 GNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGN 263 (329)
T ss_pred hhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC-Cch
Confidence 34456667777776666654321 012322222 122223334444445554444444443 344
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccC
Q 010496 250 VKVCNTLIDLYSRCGCIEFARQVFQRMHK 278 (509)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 278 (509)
+..|..-..+.+..-+.++|.+-|..+.+
T Consensus 264 vKA~frRakAhaa~Wn~~eA~~D~~~vL~ 292 (329)
T KOG0545|consen 264 VKAYFRRAKAHAAVWNEAEAKADLQKVLE 292 (329)
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHh
Confidence 44444444444444444444444444443
No 459
>TIGR02328 conserved hypothetical protein. Members of this protein are found in a small number of taxonomically well separated species, yet are strongly conserved, suggesting lateral gene transfer. Members are found in Treponema denticola, Clostridium acetobutylicum, and several of the Firmicutes. The function of this protein is unknown.
Probab=43.05 E-value=19 Score=26.74 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHcCccCCCC
Q 010496 478 EHIYSMLELLSFDLKLCGYVPETV 501 (509)
Q Consensus 478 ~~~~~~~~~~~~~m~~~g~~pd~~ 501 (509)
..+..-=+.++++|+.+||+|+++
T Consensus 48 ~~L~~yH~lv~~EM~~RGY~~~~~ 71 (120)
T TIGR02328 48 YKLFAYHLLVMEEMATRGYHVSKQ 71 (120)
T ss_pred HHHHHHHHHHHHHHHHcCCCCChh
Confidence 344555567889999999999984
No 460
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=43.01 E-value=1.3e+02 Score=21.80 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=14.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHh
Q 010496 322 ALTACSHAGLIEDGLRYFDIMKKI 345 (509)
Q Consensus 322 li~~~~~~~~~~~a~~~~~~~~~~ 345 (509)
+.......|++++|...+++..+.
T Consensus 47 lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 47 LAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH
Confidence 333455567777777777766543
No 461
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=42.73 E-value=63 Score=23.30 Aligned_cols=29 Identities=14% Similarity=0.366 Sum_probs=13.5
Q ss_pred CHHHHHHHHhcCCCCCHhHHHHHHHHHHH
Q 010496 164 DIESAVRMFDEMPVRDAISWTALLNGFVK 192 (509)
Q Consensus 164 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 192 (509)
+.+++..+++.++...+.+|..+..++..
T Consensus 49 ~~~k~~~Lld~L~~RG~~AF~~F~~aL~~ 77 (90)
T cd08332 49 SFSQNVALLNLLPKRGPRAFSAFCEALRE 77 (90)
T ss_pred cHHHHHHHHHHHHHhChhHHHHHHHHHHh
Confidence 34444444444444444444444444433
No 462
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=42.54 E-value=98 Score=29.88 Aligned_cols=44 Identities=18% Similarity=0.356 Sum_probs=30.0
Q ss_pred HHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010496 374 VVENMPMKPNEV--VLGSLLAACRTKGDIILAERLMKYLVDLDPGV 417 (509)
Q Consensus 374 ~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 417 (509)
+|...+++|... ++..-+..+.+.+++..|..+.+++++++|..
T Consensus 288 YFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 288 YFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 344445665433 66777778889999999999999999998864
No 463
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=42.50 E-value=2.1e+02 Score=24.19 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=27.5
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCC--------------CCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 010496 220 SVLNACANVGTLGIGLWIHRYVLKQDF--------------KDNVKVCNTLIDLYSRCGCIEFARQVFQ 274 (509)
Q Consensus 220 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--------------~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 274 (509)
+++-.|.+.-++.++.++++.|-+..+ .+.-.+.|.....+.+.|..+.|..+++
T Consensus 137 S~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLr 205 (233)
T PF14669_consen 137 SLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLR 205 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHh
Confidence 344455555566666666655554321 1222344455555555555555555554
No 464
>PRK09857 putative transposase; Provisional
Probab=42.13 E-value=1.8e+02 Score=26.59 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=45.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 010496 388 GSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQK 451 (509)
Q Consensus 388 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 451 (509)
..++.-....++.++..++++.+.+..|........++.-+.+.|.-+++.++.++|...|+..
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~ 273 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPL 273 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 3444444456666667777777766656555566678888888888888899999999888764
No 465
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=41.46 E-value=1.1e+02 Score=27.06 Aligned_cols=17 Identities=12% Similarity=0.194 Sum_probs=6.8
Q ss_pred HhccCCHHHHHHHHHHh
Q 010496 326 CSHAGLIEDGLRYFDIM 342 (509)
Q Consensus 326 ~~~~~~~~~a~~~~~~~ 342 (509)
|.+.|++++|.++|+.+
T Consensus 188 y~~~g~~~~A~~~l~~~ 204 (247)
T PF11817_consen 188 YFRLGDYDKALKLLEPA 204 (247)
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 33334444444444333
No 466
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=41.27 E-value=35 Score=31.41 Aligned_cols=115 Identities=10% Similarity=0.015 Sum_probs=71.7
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCCh---hhHHHHHHHHHhCCChHHHHH
Q 010496 226 ANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTL---VSWNSIIVGFAVNGFVGEALE 302 (509)
Q Consensus 226 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~ 302 (509)
...|.++.|.+.+-..+..+ ++....|..-..++.+.+++..|++-+....+-+. ..|-.-..+....|+|++|..
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~ 203 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAH 203 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHH
Confidence 34566777888877777776 66667777777778888888888777776654322 223333344455788888888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 303 YFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 303 ~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
.|....+.+..+....+.. ...-+.+..++-...+++.+
T Consensus 204 dl~~a~kld~dE~~~a~lK--eV~p~a~ki~e~~~k~er~~ 242 (377)
T KOG1308|consen 204 DLALACKLDYDEANSATLK--EVFPNAGKIEEHRRKYERAR 242 (377)
T ss_pred HHHHHHhccccHHHHHHHH--HhccchhhhhhchhHHHHHH
Confidence 8888888766655443322 22334444444444444444
No 467
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=40.92 E-value=37 Score=26.53 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=24.0
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH
Q 010496 190 FVKRGYFEEALECFREMQISGVEPDYVTIISVLNA 224 (509)
Q Consensus 190 ~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 224 (509)
..+.|.-.+|..+|.+|++.|-+||. |+.|+..
T Consensus 105 lR~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 105 LRAYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 34556677889999999999988874 5555544
No 468
>PF13934 ELYS: Nuclear pore complex assembly
Probab=40.66 E-value=2.5e+02 Score=24.54 Aligned_cols=115 Identities=15% Similarity=0.149 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCC--ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC--CHhHHHHHHHHHHHc
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVK--SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR--DAISWTALLNGFVKR 193 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~ 193 (509)
+.-+..++.++....+ ..-.+.++.+..| .+.-...++.++...|+.+.|+.+++....+ +...-..++.. ..+
T Consensus 76 p~~~~~~~~g~W~LD~-~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~~~~~~~~~~-La~ 153 (226)
T PF13934_consen 76 PPKYIKFIQGFWLLDH-GDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAVGPPLSSPEALTLYFVA-LAN 153 (226)
T ss_pred CHHHHHHHHHHHHhCh-HhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcCCCCCCHHHHHHHHHH-HHc
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH----ccCCHHHHHHH
Q 010496 194 GYFEEALECFREMQISGVEPDYVTIISVLNACA----NVGTLGIGLWI 237 (509)
Q Consensus 194 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~ 237 (509)
+.+.+|..+-+.... .-....+..++..+. +.+..++...+
T Consensus 154 ~~v~EAf~~~R~~~~---~~~~~l~e~l~~~~~~~~~~~~~~~~Ll~L 198 (226)
T PF13934_consen 154 GLVTEAFSFQRSYPD---ELRRRLFEQLLEHCLEECARSGRLDELLSL 198 (226)
T ss_pred CCHHHHHHHHHhCch---hhhHHHHHHHHHHHHHHhhhhhHHHHHHhC
No 469
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=40.60 E-value=1.7e+02 Score=22.54 Aligned_cols=59 Identities=15% Similarity=0.040 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-------hcCCCCCchHH----HHHHHHHHcCCchHHHHHHHHH
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLV-------DLDPGVDSNYV----LLANMYAAVGKWDGAGKIRRTM 444 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~m 444 (509)
.+..|..++...|++++++...+.++ ++..+....|. +-+.++-..|+.++|+..|+..
T Consensus 57 chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 57 CHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 44445555666666666554433333 23333222332 3344566778888888777643
No 470
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=40.01 E-value=4.3e+02 Score=27.06 Aligned_cols=137 Identities=15% Similarity=0.172 Sum_probs=30.7
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCC
Q 010496 301 LEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPM 380 (509)
Q Consensus 301 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 380 (509)
...++.++.+-.-.+......++..|.+.|..+.|..+.+.+-.+. ....-|..-+..+.++|+...+..+.+.
T Consensus 390 ~~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~---~~~~~~g~AL~~~~ra~d~~~v~~i~~~--- 463 (566)
T PF07575_consen 390 RERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRL---LKEGRYGEALSWFIRAGDYSLVTRIADR--- 463 (566)
T ss_dssp HHHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---HHCCCHHHHHHHHHHCCCHHHHHHHHHH---
Confidence 4444444444333455566677777888888888877777666321 1112233334444445444443333322
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-C-CCchHHHHHHHH--HHcCCchHHHHHHHHHHhCCCccCC
Q 010496 381 KPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDP-G-VDSNYVLLANMY--AAVGKWDGAGKIRRTMKGRGIQKKP 453 (509)
Q Consensus 381 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~-~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~~~~~~~ 453 (509)
++..|...|... ...+++.+..... . .-..|..+-+.| .+.|++.+|.+.+-.+.+.++.|..
T Consensus 464 ---------ll~~~~~~~~~~-~~~ll~~i~~~~~~~~~L~fla~yreF~~~~~~~~~~~Aa~~Lv~Ll~~~~~Pk~ 530 (566)
T PF07575_consen 464 ---------LLEEYCNNGEPL-DDDLLDNIGSPMLLSQRLSFLAKYREFYELYDEGDFREAASLLVSLLKSPIAPKS 530 (566)
T ss_dssp -----------------------------------------------------------------------------
T ss_pred ---------HHHHHhcCCCcc-cHHHHHHhcchhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHCCCCCcHH
Confidence 223333333211 1122221111000 0 111122222222 3458888888888888877765544
No 471
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.33 E-value=2.1e+02 Score=29.17 Aligned_cols=86 Identities=9% Similarity=0.011 Sum_probs=65.7
Q ss_pred HHhcCChHHHHHHHHh-CCCCC-C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 010496 362 YSRAGRLEDALNVVEN-MPMKP-N------EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGK 433 (509)
Q Consensus 362 ~~~~g~~~~A~~~~~~-~~~~p-~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 433 (509)
..+..++..+.++|.. |..-| | ....+.|.-+|....+.+.|.++++++.+.+|.++-.-..+.......|.
T Consensus 364 ~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~ 443 (872)
T KOG4814|consen 364 LFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDK 443 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcc
Confidence 3456678888887765 33222 1 22556666678888899999999999999999888777788888889999
Q ss_pred chHHHHHHHHHHhC
Q 010496 434 WDGAGKIRRTMKGR 447 (509)
Q Consensus 434 ~~~A~~~~~~m~~~ 447 (509)
-++|+.+.......
T Consensus 444 Se~AL~~~~~~~s~ 457 (872)
T KOG4814|consen 444 SEEALTCLQKIKSS 457 (872)
T ss_pred hHHHHHHHHHHHhh
Confidence 99999998877654
No 472
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=38.97 E-value=2.6e+02 Score=28.72 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=43.5
Q ss_pred HHHHHHHhcCCchHHHHHHHhcCCC------ChHHHHHHHHHHHhCCCHH------HHHHHHhcCCC-CCHhHHHHHHHH
Q 010496 123 ALLDMYAKFGRMDLATVVFDAMRVK------SSFTWNAMIDGYMRRGDIE------SAVRMFDEMPV-RDAISWTALLNG 189 (509)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~------~A~~~~~~~~~-~~~~~~~~li~~ 189 (509)
.|+.+|..+|++-.+.++++..... =...+|..|....+.|.++ .|.+.++...- -|..+|..|+.+
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~~ 112 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQA 112 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHHh
Confidence 6888888888888888888877532 2346777777777777653 33334433322 255666665555
Q ss_pred HHH
Q 010496 190 FVK 192 (509)
Q Consensus 190 ~~~ 192 (509)
...
T Consensus 113 sln 115 (1117)
T COG5108 113 SLN 115 (1117)
T ss_pred hcC
Confidence 443
No 473
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=38.80 E-value=2e+02 Score=23.01 Aligned_cols=20 Identities=5% Similarity=-0.034 Sum_probs=9.1
Q ss_pred HHHhccCCHHHHHHHHHHhH
Q 010496 324 TACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~~~ 343 (509)
..+.+.+..-.|.++++.+.
T Consensus 28 ~~L~~~~~~~sAeei~~~l~ 47 (145)
T COG0735 28 ELLLEADGHLSAEELYEELR 47 (145)
T ss_pred HHHHhcCCCCCHHHHHHHHH
Confidence 33334444444555555554
No 474
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.41 E-value=4e+02 Score=26.29 Aligned_cols=212 Identities=12% Similarity=-0.002 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCCC----------HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH---------hHHHHHHHHHH
Q 010496 166 ESAVRMFDEMPVRD----------AISWTALLNGFVKRGYFEEALECFREMQISGVEPDY---------VTIISVLNACA 226 (509)
Q Consensus 166 ~~A~~~~~~~~~~~----------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~---------~~~~~l~~~~~ 226 (509)
|+|+...++.++.+ ..+...++-+-.-.|++.+|++-+..|.+--..... .....+..-++
T Consensus 299 De~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~ 378 (629)
T KOG2300|consen 299 DEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSH 378 (629)
T ss_pred HHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhh
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHhHHHHH--HHHHHhcCCHHHHHHHHHhccCCChh----------hHHHHHHHHHhC
Q 010496 227 NVGTLGIGLWIHRYVLKQDFKDNVKVCNTL--IDLYSRCGCIEFARQVFQRMHKRTLV----------SWNSIIVGFAVN 294 (509)
Q Consensus 227 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~~~~~----------~~~~l~~~~~~~ 294 (509)
..+.++.|+..|....+.--..+...+..+ .-.|.+.|+-+.-.++++.+..++.. .+-.-.-.....
T Consensus 379 sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~q 458 (629)
T KOG2300|consen 379 SVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQ 458 (629)
T ss_pred hcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHh
Q ss_pred CChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHH-------HHHHHHHH
Q 010496 295 GFVGEALEYFNSMQKEG-----FKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEH-------YGCIVDLY 362 (509)
Q Consensus 295 ~~~~~A~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~~li~~~ 362 (509)
+++.+|...+.+-.+.. .+...-....|-..+...|+..++.....-..+-..-.||..+ |..+..++
T Consensus 459 n~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~ 538 (629)
T KOG2300|consen 459 NDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQAL 538 (629)
T ss_pred ccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcCCCchHHHHHHHHHHHHHHHh
Q ss_pred HhcCChHHHHHHHHh
Q 010496 363 SRAGRLEDALNVVEN 377 (509)
Q Consensus 363 ~~~g~~~~A~~~~~~ 377 (509)
...|.-++-..+-..
T Consensus 539 g~~~~~~e~e~~~~~ 553 (629)
T KOG2300|consen 539 GEKGNEMENEAFRKH 553 (629)
T ss_pred CcchhhHHHHHHHHH
No 475
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=38.19 E-value=1.7e+02 Score=25.06 Aligned_cols=79 Identities=15% Similarity=0.243 Sum_probs=51.7
Q ss_pred ChHHHHHHHHhCCC-----CC-----CHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHhcCCC--CCchHHHHH
Q 010496 367 RLEDALNVVENMPM-----KP-----NEVVLGSLLAACRTKG---------DIILAERLMKYLVDLDPG--VDSNYVLLA 425 (509)
Q Consensus 367 ~~~~A~~~~~~~~~-----~p-----~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~~~~~~~--~~~~~~~l~ 425 (509)
..+.|..++..|+. -| ...-|..+..+|.+.| +.+.-.++++..++.+.. -|..|.+++
T Consensus 136 ~vetAiaml~dmG~~SiKffPM~Gl~~leE~~avA~aca~~g~~lEPTGGIdl~Nf~~I~~i~ldaGv~kviPHIYssiI 215 (236)
T TIGR03581 136 PIETAIAMLKDMGGSSVKFFPMGGLKHLEEYAAVAKACAKHGFYLEPTGGIDLDNFEEIVQIALDAGVEKVIPHVYSSII 215 (236)
T ss_pred eHHHHHHHHHHcCCCeeeEeecCCcccHHHHHHHHHHHHHcCCccCCCCCccHHhHHHHHHHHHHcCCCeeccccceecc
Confidence 35667777777731 11 3446677777777766 455666677777776655 556787777
Q ss_pred HHHHHcCCchHHHHHHHHHH
Q 010496 426 NMYAAVGKWDGAGKIRRTMK 445 (509)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~ 445 (509)
+--.-.-+.++..+++..++
T Consensus 216 Dk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 216 DKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred ccccCCCCHHHHHHHHHHhh
Confidence 66655667788888777664
No 476
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=38.00 E-value=2.7e+02 Score=24.22 Aligned_cols=94 Identities=21% Similarity=0.281 Sum_probs=58.3
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC---CHHHHH--HHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHH
Q 010496 282 VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKP---DGVSFT--GALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYG 356 (509)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p---~~~~~~--~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 356 (509)
.-+|.|+--|.-...+.+|.+.|.. +.|+.| |..++. .-|......|+++.|+.....+.. .-+..|...+-
T Consensus 27 ~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~P-eiLd~n~~l~F 103 (228)
T KOG2659|consen 27 EDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNP-EILDTNRELFF 103 (228)
T ss_pred hhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhCh-HHHccchhHHH
Confidence 3456666666666666667766654 334444 334433 456667889999999999888762 23444443333
Q ss_pred HHHH----HHHhcCChHHHHHHHHhC
Q 010496 357 CIVD----LYSRAGRLEDALNVVENM 378 (509)
Q Consensus 357 ~li~----~~~~~g~~~~A~~~~~~~ 378 (509)
.|.. -..+.|..++|+++.+.-
T Consensus 104 ~Lq~q~lIEliR~~~~eeal~F~q~~ 129 (228)
T KOG2659|consen 104 HLQQLHLIELIREGKTEEALEFAQTK 129 (228)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 2222 245778888888887664
No 477
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=37.44 E-value=4.9e+02 Score=26.96 Aligned_cols=50 Identities=24% Similarity=0.330 Sum_probs=29.7
Q ss_pred cCCHHHHHHHHHHHHhcC---CC-CCchHHH-----HHHHHHHcCCchHHHHHHHHHHh
Q 010496 397 KGDIILAERLMKYLVDLD---PG-VDSNYVL-----LANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 397 ~g~~~~a~~~~~~~~~~~---~~-~~~~~~~-----l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.|+..+..+........- ++ ....|.. +...|...|+.++|.....+...
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 677777666555544422 22 2234533 33446678999999888877643
No 478
>PRK09462 fur ferric uptake regulator; Provisional
Probab=37.28 E-value=2e+02 Score=22.98 Aligned_cols=60 Identities=5% Similarity=0.102 Sum_probs=37.3
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 010496 205 EMQISGVEPDYVTIISVLNACAN-VGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGC 265 (509)
Q Consensus 205 ~m~~~~~~p~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 265 (509)
.+.+.|++++..-. .++..+.. .+..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 7 ~l~~~glr~T~qR~-~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gl 67 (148)
T PRK09462 7 ALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGI 67 (148)
T ss_pred HHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCC
Confidence 35566766665443 33444443 34567888888888887766666665556666666664
No 479
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=37.12 E-value=1.6e+02 Score=21.22 Aligned_cols=53 Identities=23% Similarity=0.123 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHHcCCch
Q 010496 383 NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG--VDSNYVLLANMYAAVGKWD 435 (509)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 435 (509)
|...-..+...+...|++++|++.+-.+++.++. +...-..|+..+.-.|.-+
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~ 75 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD 75 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence 4456666677778888888888888888777665 3445666666666666543
No 480
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1. Caspase activation and recruitment domain (CARD) similar to that found in apoptotic protease-activating factor 1 (APAF-1), which is an activator of caspase-9. APAF-1 contains WD-40 repeats, a CARD, and an ATPase domain. Upon stimulation, APAF-1, together with caspase-9, forms the heptameric 'apoptosome', which leads to the processing and activation of caspase-9, starting a caspase cascade which leads to apoptosis. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and DED (Death Effect
Probab=36.78 E-value=1.3e+02 Score=21.42 Aligned_cols=29 Identities=17% Similarity=0.377 Sum_probs=12.5
Q ss_pred CHHHHHHHHhcCCCCCHhHHHHHHHHHHH
Q 010496 164 DIESAVRMFDEMPVRDAISWTALLNGFVK 192 (509)
Q Consensus 164 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 192 (509)
+.++|..+++.+..+...+|..+..++..
T Consensus 43 ~~~qa~~Lld~L~trG~~Af~~F~~aL~~ 71 (86)
T cd08323 43 QKEKAVMLINMILTKDNHAYVSFYNALLH 71 (86)
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 34444444444444444444444444433
No 481
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=36.73 E-value=67 Score=32.78 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=18.5
Q ss_pred ccchHHHHHHHHcCCChhHHHHHHHH
Q 010496 45 TVQWTSSISRHCRSGRIAEAALEFTR 70 (509)
Q Consensus 45 ~~~~~~li~~~~~~g~~~~A~~~~~~ 70 (509)
+.-|+ .+..+.-.|.++.|..++..
T Consensus 149 p~FW~-~v~~lvlrG~~~~a~~lL~~ 173 (566)
T PF07575_consen 149 PDFWD-YVQRLVLRGLFDQARQLLRL 173 (566)
T ss_dssp HHHHH-HHHHHHHTT-HHHHHHHH-T
T ss_pred hhHHH-HHHHHHHcCCHHHHHHHHHh
Confidence 56676 68888888999999888843
No 482
>PF05570 DUF765: Circovirus protein of unknown function (DUF765); InterPro: IPR008484 This family consists of several short (27-30aa) porcine and bovine circovirus ORF6 proteins of unknown function.
Probab=36.68 E-value=17 Score=18.57 Aligned_cols=17 Identities=35% Similarity=0.423 Sum_probs=9.9
Q ss_pred CCccccccccCCCCCCC
Q 010496 1 MNSSATATILPQPFLPH 17 (509)
Q Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (509)
|-||.+.+..|...+..
T Consensus 1 masstpaspapsdils~ 17 (29)
T PF05570_consen 1 MASSTPASPAPSDILSS 17 (29)
T ss_pred CCcCCCCCCCcHHHHhc
Confidence 45666766666644433
No 483
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=36.24 E-value=1e+03 Score=30.44 Aligned_cols=90 Identities=12% Similarity=0.122 Sum_probs=43.7
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHH---HHHH---HHHHHhc-CCHHHHHHHHHHHHhcCCC---CCchHHHHHHH
Q 010496 358 IVDLYSRAGRLEDALNVVENMPMKPNEVV---LGSL---LAACRTK-GDIILAERLMKYLVDLDPG---VDSNYVLLANM 427 (509)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~~~~~p~~~~---~~~l---~~~~~~~-g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~ 427 (509)
+.....++|-++.+...+.++=--|+... +..+ +.+|... +....++++.+..--.... ....|..=+..
T Consensus 2742 fakvArkh~l~~vcl~~L~~iytlp~veiqdaF~K~req~~c~l~~~~e~~~gLevi~sTNl~yF~~~q~aeff~lkG~f 2821 (3550)
T KOG0889|consen 2742 FAKVARKHGLPDVCLNQLAKIYTLPNVEIQDAFQKLREQAKCYLQNKNELKTGLEVIESTNLMYFSDRQKAEFFTLKGMF 2821 (3550)
T ss_pred HHHHHHhcCChHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHhcChHHHHHHHHHHhcccHHHHhhHHHHHHHHhhhHH
Confidence 33344455666666665555522333222 1111 1222222 2344455544433221111 22345566666
Q ss_pred HHHcCCchHHHHHHHHHHhC
Q 010496 428 YAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~ 447 (509)
..+.|+.++|-+.|....+.
T Consensus 2822 ~~kL~~~eeAn~~fs~AvQi 2841 (3550)
T KOG0889|consen 2822 LEKLGKFEEANKAFSAAVQI 2841 (3550)
T ss_pred HHHhcCcchhHHHHHHHHHH
Confidence 77788888888888776653
No 484
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=36.18 E-value=2.4e+02 Score=28.21 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=37.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCCH-H---HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010496 356 GCIVDLYSRAGRLEDALNVVENMPMKPNE-V---VLGSLLAACRTKGDIILAERLMKYLVDL 413 (509)
Q Consensus 356 ~~li~~~~~~g~~~~A~~~~~~~~~~p~~-~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 413 (509)
..++.-|.+.+++++|..++..|...-.. . ..+.+++.+.+..--.+.+..++.++..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~algs 473 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALGS 473 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHhh
Confidence 45677888889999999998888644322 2 3444455556665455666666666663
No 485
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=36.18 E-value=87 Score=17.93 Aligned_cols=15 Identities=20% Similarity=0.007 Sum_probs=6.3
Q ss_pred HHHHhcCCHHHHHHH
Q 010496 392 AACRTKGDIILAERL 406 (509)
Q Consensus 392 ~~~~~~g~~~~a~~~ 406 (509)
..+-..|++++|..+
T Consensus 9 ~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 9 YNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHTT-HHHHHHH
T ss_pred HHHHHHhhHHHHHHH
Confidence 334444444444444
No 486
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=35.88 E-value=1.8e+02 Score=24.03 Aligned_cols=61 Identities=8% Similarity=0.031 Sum_probs=33.3
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 010496 307 MQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLE 369 (509)
Q Consensus 307 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 369 (509)
+...|++++..-. .++..+...+..-.|.++++.+. ..+...+..|...-+..+.+.|-+.
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~-~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLR-EAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHH-hhCCCCCcchHHHHHHHHHHCCCEE
Confidence 3445665554433 33344444455666777777777 3444455555444556666666553
No 487
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=34.69 E-value=3.5e+02 Score=24.49 Aligned_cols=112 Identities=13% Similarity=0.013 Sum_probs=49.6
Q ss_pred CHHHHHHHHhcCCCC-CHhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC-------CH
Q 010496 164 DIESAVRMFDEMPVR-DAISWTALLNGFVK----RGYFEEALECFREMQISGVEPDYVTIISVLNACANVG-------TL 231 (509)
Q Consensus 164 ~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-------~~ 231 (509)
+..+|.++|...-.. .+.....|...|.. ..+..+|..+|.+..+.|..+...+...+...+.... +.
T Consensus 92 ~~~~A~~~~~~~a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~ 171 (292)
T COG0790 92 DKTKAADWYRCAAADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDD 171 (292)
T ss_pred cHHHHHHHHHHHhhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHH
Confidence 345555555533333 33334444444443 2356666666666666653322122223333332221 12
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhccC
Q 010496 232 GIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR----CGCIEFARQVFQRMHK 278 (509)
Q Consensus 232 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 278 (509)
..|...+.++-..+ +......+...|.. ..+..+|...|....+
T Consensus 172 ~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~ 219 (292)
T COG0790 172 KKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAE 219 (292)
T ss_pred HhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 24555555555554 23333333333332 2245555555555443
No 488
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.94 E-value=6.2e+02 Score=27.15 Aligned_cols=307 Identities=14% Similarity=0.060 Sum_probs=141.8
Q ss_pred HHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHH
Q 010496 124 LLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECF 203 (509)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 203 (509)
+=+.|...|++++|+++-..-+..=..++..-...|.+.+++..|.+++.++. ..|..+.--+...++.+ ++..|
T Consensus 364 vWk~yLd~g~y~kAL~~ar~~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~----~~FEEVaLKFl~~~~~~-~L~~~ 438 (911)
T KOG2034|consen 364 VWKTYLDKGEFDKALEIARTRPDALETVLLKQADFLFQDKEYLRAAEIYAETL----SSFEEVALKFLEINQER-ALRTF 438 (911)
T ss_pred HHHHHHhcchHHHHHHhccCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh----hhHHHHHHHHHhcCCHH-HHHHH
Confidence 34567788888888876554411112234445566777788888888887773 33444444455555554 43333
Q ss_pred HHHHHcCCCCCHhHHHH-----HHHHH-HccCCHH----HHHHHHHHHH--------H-cCCCCcHhHHHHHHHHHHhcC
Q 010496 204 REMQISGVEPDYVTIIS-----VLNAC-ANVGTLG----IGLWIHRYVL--------K-QDFKDNVKVCNTLIDLYSRCG 264 (509)
Q Consensus 204 ~~m~~~~~~p~~~~~~~-----l~~~~-~~~~~~~----~a~~~~~~~~--------~-~~~~~~~~~~~~l~~~~~~~g 264 (509)
-.=+-..++|...+-.. ++..| .+.++.+ .+..-++.-. . .....+.....+..+.+...|
T Consensus 439 L~KKL~~lt~~dk~q~~~Lv~WLlel~L~~Ln~l~~~de~~~en~~~~~~~~~re~~~~~~~~~~~~nretv~~l~~~~~ 518 (911)
T KOG2034|consen 439 LDKKLDRLTPEDKTQRDALVTWLLELYLEQLNDLDSTDEEALENWRLEYDEVQREFSKFLVLHKDELNRETVYQLLASHG 518 (911)
T ss_pred HHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHHHHHHHHHHHHhhHHhhhHHHHHHHHHHcc
Confidence 22111224444333222 12221 2222221 2222111110 0 000111222233333444455
Q ss_pred CHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 010496 265 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344 (509)
Q Consensus 265 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 344 (509)
+.+.+..+-.-+. -|..++.-+++.+.+++|++++..-. +...+....-. ............|....
T Consensus 519 ~~e~ll~fA~l~~-----d~~~vv~~~~q~e~yeeaLevL~~~~------~~el~yk~ap~-Li~~~p~~tV~~wm~~~- 585 (911)
T KOG2034|consen 519 RQEELLQFANLIK-----DYEFVVSYWIQQENYEEALEVLLNQR------NPELFYKYAPE-LITHSPKETVSAWMAQK- 585 (911)
T ss_pred CHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhcc------chhhHHHhhhH-HHhcCcHHHHHHHHHcc-
Confidence 5555544433332 35566677777778887777765431 22221111111 11233444444444443
Q ss_pred hcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010496 345 IYRVSPRIEHYGCIVDLYSRAG---RLEDALNVVENM---PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD 418 (509)
Q Consensus 345 ~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 418 (509)
...| ......++..+.+.+ ....+...++-. --.-+...++.++..|++..+ +...-.++..........
T Consensus 586 --d~~~-~~li~~~L~~~~~~~~~~~~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~-~~ll~~le~~~~~~~~~~ 661 (911)
T KOG2034|consen 586 --DLDP-NRLIPPILSYFSNWHSEYEENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER-DDLLLYLEIIKFMKSRVH 661 (911)
T ss_pred --ccCc-hhhhHHHHHHHhcCCccccHHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc-cchHHHHHHHhhccccce
Confidence 1112 222333444444442 233344444332 112366777888777766544 344444444433332222
Q ss_pred chHHHHHHHHHHcCC------chHHHHHHHHHHhCCCccC
Q 010496 419 SNYVLLANMYAAVGK------WDGAGKIRRTMKGRGIQKK 452 (509)
Q Consensus 419 ~~~~~l~~~~~~~g~------~~~A~~~~~~m~~~~~~~~ 452 (509)
--....++.|.+.+. ..-++++|.++++..++-+
T Consensus 662 YDl~~alRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL~~d 701 (911)
T KOG2034|consen 662 YDLDYALRLCLKFKKTRACVFLLCMLNLFEDAVDLALQFD 701 (911)
T ss_pred ecHHHHHHHHHHhCccceeeeHHHHHHHHHHHHHHHhhcC
Confidence 224455566666655 3456666677777665543
No 489
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=33.51 E-value=3e+02 Score=23.33 Aligned_cols=19 Identities=16% Similarity=0.295 Sum_probs=13.2
Q ss_pred HHHcCCchHHHHHHHHHHh
Q 010496 428 YAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~ 446 (509)
..+.|+++.|.+.++-|.+
T Consensus 131 ~l~~~~~~~Ae~~~~~ME~ 149 (204)
T COG2178 131 LLRKGSFEEAERFLKFMEK 149 (204)
T ss_pred HHHhccHHHHHHHHHHHHH
Confidence 3456778888877777754
No 490
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=33.45 E-value=1.2e+03 Score=30.11 Aligned_cols=20 Identities=15% Similarity=0.026 Sum_probs=13.0
Q ss_pred HHHHcCCChhHHHHHHHHHh
Q 010496 53 SRHCRSGRIAEAALEFTRMT 72 (509)
Q Consensus 53 ~~~~~~g~~~~A~~~~~~m~ 72 (509)
..|.+.|.+++|..+|++..
T Consensus 2490 ~s~eQ~G~~e~AQ~lyekaq 2509 (3550)
T KOG0889|consen 2490 LSYEQLGFWEEAQSLYEKAQ 2509 (3550)
T ss_pred HHHHHhhhHHHHhhHHHHHH
Confidence 34556677777777777654
No 491
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=33.45 E-value=3.7e+02 Score=24.41 Aligned_cols=260 Identities=12% Similarity=0.059 Sum_probs=135.2
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCCC----CHh-------HHHHHHHHHHHcCChHHHHHHHHHHH----HcCCCCCHhHH
Q 010496 154 AMIDGYMRRGDIESAVRMFDEMPVR----DAI-------SWTALLNGFVKRGYFEEALECFREMQ----ISGVEPDYVTI 218 (509)
Q Consensus 154 ~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-------~~~~li~~~~~~~~~~~A~~~~~~m~----~~~~~p~~~~~ 218 (509)
-+.+-..+.+++++|...+.++... +.. +...+...|...|+...--++..... .-.-+-.....
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kii 87 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKII 87 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHH
Confidence 3556677889999999999988654 322 45567788999998876666554432 22112234455
Q ss_pred HHHHHHHHc-cCCHHHHHHHHHHHHHcCCCCc-----HhHHHHHHHHHHhcCCHHHHHHHHHhcc--------CCChhhH
Q 010496 219 ISVLNACAN-VGTLGIGLWIHRYVLKQDFKDN-----VKVCNTLIDLYSRCGCIEFARQVFQRMH--------KRTLVSW 284 (509)
Q Consensus 219 ~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~--------~~~~~~~ 284 (509)
.+|+.-+.. ...++....+....++-..... ...-..++..+.+.|++.+|+.+...+. +++..+.
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~v 167 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITV 167 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeeh
Confidence 666666644 3456766666666554321111 2223467888999999999998765543 1222221
Q ss_pred HHH-HHHHHhCCChHHHHHHHHHHHH----CCCCCCHHHHHHHHHH--HhccCCHHHHHHHHHHhHHhcCCC---CCHHH
Q 010496 285 NSI-IVGFAVNGFVGEALEYFNSMQK----EGFKPDGVSFTGALTA--CSHAGLIEDGLRYFDIMKKIYRVS---PRIEH 354 (509)
Q Consensus 285 ~~l-~~~~~~~~~~~~A~~~~~~m~~----~g~~p~~~~~~~li~~--~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~ 354 (509)
..+ -.+|....+..++..-+..... .-.+|....-.-|+.+ .|...++..|..+|-+..+ |+. .+...
T Consensus 168 hllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~E--gft~l~~d~kA 245 (421)
T COG5159 168 HLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALE--GFTLLKMDVKA 245 (421)
T ss_pred hhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHh--ccccccchHHH
Confidence 111 1234333444443333332221 1134444444444444 3455677888887777664 332 23333
Q ss_pred HHH---HHHHHHhcCChHHHHHHHHhCC-CC-C---CHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCC
Q 010496 355 YGC---IVDLYSRAGRLEDALNVVENMP-MK-P---NEVVLGSLLAACRT--KGDIILAERLMKYLVDLDP 415 (509)
Q Consensus 355 ~~~---li~~~~~~g~~~~A~~~~~~~~-~~-p---~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~ 415 (509)
... ++-.-...++.++...+++.-. .+ - .......+..++.. ..++..|+.-|+.-+..++
T Consensus 246 c~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~ 316 (421)
T COG5159 246 CVSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDS 316 (421)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCH
Confidence 222 2222233455555555553320 11 1 22233333333322 2356666666655444443
No 492
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=32.96 E-value=2.1e+02 Score=21.37 Aligned_cols=24 Identities=25% Similarity=0.588 Sum_probs=12.7
Q ss_pred HHHHHHhCCCHHHHHHHHhcCCCC
Q 010496 155 MIDGYMRRGDIESAVRMFDEMPVR 178 (509)
Q Consensus 155 l~~~~~~~~~~~~A~~~~~~~~~~ 178 (509)
++.-|...|+.++|...+.++..+
T Consensus 8 ~l~ey~~~~d~~ea~~~l~el~~~ 31 (113)
T PF02847_consen 8 ILMEYFSSGDVDEAVECLKELKLP 31 (113)
T ss_dssp HHHHHHHHT-HHHHHHHHHHTT-G
T ss_pred HHHHHhcCCCHHHHHHHHHHhCCC
Confidence 444555556666666666665444
No 493
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=32.61 E-value=2.2e+02 Score=26.60 Aligned_cols=58 Identities=12% Similarity=0.035 Sum_probs=41.4
Q ss_pred hcCC-hHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 010496 364 RAGR-LEDALNVVENM-PMKPNE----VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNY 421 (509)
Q Consensus 364 ~~g~-~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 421 (509)
..|- .+++..++..+ ..-|+. ..|..++......|.+++++.+|++++..+..+..-+
T Consensus 114 ~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~agAqPieEl 177 (353)
T PF15297_consen 114 EEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAGAQPIEEL 177 (353)
T ss_pred HcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcCCChHHHH
Confidence 3444 45777777765 344554 3677888888889999999999999999887754433
No 494
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=32.43 E-value=3.5e+02 Score=23.83 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=35.7
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 010496 381 KPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAV 431 (509)
Q Consensus 381 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 431 (509)
.|.+.....++..|. .+++++|.+++.++-+.+..+......+.++.-..
T Consensus 236 ~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~~ 285 (333)
T KOG0991|consen 236 EPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDIITTLFRVVKNM 285 (333)
T ss_pred CCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 577777777777664 45889999999998888877655555555554433
No 495
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=31.96 E-value=50 Score=20.20 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHcCccCC
Q 010496 483 MLELLSFDLKLCGYVPE 499 (509)
Q Consensus 483 ~~~~~~~~m~~~g~~pd 499 (509)
..+++++.+++.||.||
T Consensus 30 tr~rI~~~a~~lgY~pN 46 (46)
T PF00356_consen 30 TRERILEAAEELGYRPN 46 (46)
T ss_dssp HHHHHHHHHHHHTB-SS
T ss_pred HHHHHHHHHHHHCCCCC
Confidence 45566678889999997
No 496
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=31.95 E-value=1e+02 Score=26.87 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=23.7
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 364 RAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 364 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
+.++.+.|.+++.+. ...| ....|-.+...-.+.|+++.|.+.|++.++++|.
T Consensus 7 ~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~ 61 (287)
T COG4976 7 ESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPE 61 (287)
T ss_pred ccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcc
Confidence 334444444444443 2323 2334444444444555555555555555554443
No 497
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=31.59 E-value=97 Score=20.74 Aligned_cols=45 Identities=4% Similarity=-0.045 Sum_probs=19.5
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 010496 215 YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLY 260 (509)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (509)
...++.++..+++-.-.+.+..++.++.+.| ..+..+|..-++.+
T Consensus 8 ~~l~~Ql~el~Aed~AieDtiy~L~~al~~g-~I~~d~~lK~vR~L 52 (65)
T PF09454_consen 8 DPLSNQLYELVAEDHAIEDTIYYLDRALQRG-SIDLDTFLKQVRSL 52 (65)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-SS-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 3344444444444444445555555555444 23333443333333
No 498
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=31.56 E-value=2.1e+02 Score=23.55 Aligned_cols=60 Identities=8% Similarity=-0.023 Sum_probs=37.3
Q ss_pred HHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 010496 206 MQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCI 266 (509)
Q Consensus 206 m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 266 (509)
+...|+..+..-. .++..+...++.-.|.++++.+.+.+...+..|...-+..+.+.|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 4455666655443 33444444455667788888888777666666666666777776654
No 499
>cd08332 CARD_CASP2 Caspase activation and recruitment domain of Caspase-2. Caspase activation and recruitment domain (CARD) similar to that found in caspase-2. Caspases are aspartate-specific cysteine proteases with functions in apoptosis and immune signaling. Caspase-2 (also known as ICH1, NEDD2, or CASP2) is one of the most evolutionarily conserved caspases, and plays a role in apoptosis, DNA damage response, cell cycle regulation, and tumor suppression. It is localized in the nucleus and exhibits properties of both an initiator and an effector caspase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and
Probab=31.16 E-value=2e+02 Score=20.71 Aligned_cols=36 Identities=8% Similarity=0.160 Sum_probs=27.2
Q ss_pred HhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCC
Q 010496 129 AKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164 (509)
Q Consensus 129 ~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (509)
...-+.+.+.++++.++.+.+..|..+..++...+.
T Consensus 45 ~~~t~~~k~~~Lld~L~~RG~~AF~~F~~aL~~~~~ 80 (90)
T cd08332 45 AKPTSFSQNVALLNLLPKRGPRAFSAFCEALRETSQ 80 (90)
T ss_pred cCCCcHHHHHHHHHHHHHhChhHHHHHHHHHHhcCh
Confidence 344567888888888888888888888888866553
No 500
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.14 E-value=68 Score=33.71 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=22.1
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010496 364 RAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYL 410 (509)
Q Consensus 364 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 410 (509)
.+|+.+.|++.-+.+. +..+|..|+.....+|+.+-|+..|++.
T Consensus 655 e~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~~ 698 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQRT 698 (1202)
T ss_pred hcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHHh
Confidence 4455555554444443 4445555555555555555555555444
Done!