Query 010496
Match_columns 509
No_of_seqs 566 out of 3250
Neff 11.2
Searched_HMMs 29240
Date Mon Mar 25 08:03:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010496.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010496hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.9E-36 6.6E-41 307.4 40.9 396 40-447 79-579 (597)
2 2xpi_A Anaphase-promoting comp 100.0 2.7E-33 9.4E-38 284.2 35.3 378 55-447 63-504 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-28 9.3E-33 233.7 39.5 372 51-433 5-388 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 6.8E-27 2.3E-31 223.9 42.3 345 96-447 13-368 (388)
5 4g26_A Pentatricopeptide repea 100.0 1.5E-28 5E-33 239.6 24.3 185 180-365 26-223 (501)
6 4g26_A Pentatricopeptide repea 100.0 4.1E-27 1.4E-31 229.5 22.9 200 197-397 7-223 (501)
7 2gw1_A Mitochondrial precursor 99.9 1.2E-24 4.1E-29 216.3 31.4 393 45-448 6-479 (514)
8 2y4t_A DNAJ homolog subfamily 99.9 2.7E-23 9.3E-28 203.0 32.6 326 114-444 22-406 (450)
9 2y4t_A DNAJ homolog subfamily 99.9 4.3E-23 1.5E-27 201.5 33.8 365 42-436 23-443 (450)
10 3fp2_A TPR repeat-containing p 99.9 3.2E-23 1.1E-27 207.2 31.5 392 44-448 24-492 (537)
11 2gw1_A Mitochondrial precursor 99.9 7.7E-23 2.6E-27 203.3 31.6 358 83-448 9-445 (514)
12 3ieg_A DNAJ homolog subfamily 99.9 2.4E-20 8.4E-25 175.9 34.5 302 118-447 3-335 (359)
13 3ieg_A DNAJ homolog subfamily 99.9 3.1E-20 1.1E-24 175.2 31.9 323 80-431 3-353 (359)
14 3fp2_A TPR repeat-containing p 99.9 3.8E-19 1.3E-23 177.6 31.7 368 42-422 56-500 (537)
15 1fch_A Peroxisomal targeting s 99.9 8.3E-20 2.8E-24 173.2 24.6 301 132-443 15-355 (368)
16 3hym_B Cell division cycle pro 99.9 3.7E-19 1.3E-23 165.8 28.1 278 154-434 27-321 (330)
17 3hym_B Cell division cycle pro 99.8 8.7E-19 3E-23 163.3 28.7 265 178-447 20-299 (330)
18 2xm6_A Protein corresponding t 99.8 1.3E-17 4.5E-22 164.3 38.4 367 42-430 36-452 (490)
19 2xm6_A Protein corresponding t 99.8 5.6E-17 1.9E-21 159.8 39.9 362 65-450 27-435 (490)
20 4eqf_A PEX5-related protein; a 99.8 7.6E-19 2.6E-23 166.4 22.7 261 179-443 64-352 (365)
21 2ooe_A Cleavage stimulation fa 99.8 2.8E-16 9.6E-21 156.4 38.7 392 43-447 11-492 (530)
22 3cv0_A Peroxisome targeting si 99.8 4.4E-18 1.5E-22 158.3 22.6 260 181-445 22-313 (327)
23 3mkr_A Coatomer subunit epsilo 99.8 7.3E-17 2.5E-21 146.9 29.5 270 157-440 7-287 (291)
24 1b89_A Protein (clathrin heavy 99.8 2.1E-19 7.3E-24 167.1 11.8 281 130-440 15-304 (449)
25 1fch_A Peroxisomal targeting s 99.8 9E-18 3.1E-22 159.1 22.5 277 162-447 14-314 (368)
26 4g1t_A Interferon-induced prot 99.8 1E-16 3.4E-21 157.4 30.7 326 115-453 91-465 (472)
27 1b89_A Protein (clathrin heavy 99.8 1.9E-17 6.4E-22 154.1 21.6 286 57-378 15-308 (449)
28 1xi4_A Clathrin heavy chain; a 99.8 1.9E-15 6.7E-20 156.5 37.7 355 40-442 982-1340(1630)
29 3mkr_A Coatomer subunit epsilo 99.8 4.8E-17 1.6E-21 148.1 23.2 247 187-448 6-265 (291)
30 4eqf_A PEX5-related protein; a 99.8 3.8E-17 1.3E-21 154.7 23.0 231 214-447 64-310 (365)
31 2ooe_A Cleavage stimulation fa 99.8 2.8E-15 9.7E-20 149.2 34.3 371 68-448 2-455 (530)
32 3cv0_A Peroxisome targeting si 99.8 6.9E-17 2.4E-21 150.1 20.3 268 119-412 22-314 (327)
33 4g1t_A Interferon-induced prot 99.7 1.2E-15 4E-20 149.7 30.1 369 41-425 47-471 (472)
34 1xi4_A Clathrin heavy chain; a 99.7 1.2E-14 4.1E-19 150.7 36.0 347 51-442 1055-1440(1630)
35 3uq3_A Heat shock protein STI1 99.7 1.2E-15 4.2E-20 136.4 20.6 222 181-446 6-235 (258)
36 3uq3_A Heat shock protein STI1 99.7 2.4E-15 8.2E-20 134.5 22.5 187 252-448 7-203 (258)
37 2pl2_A Hypothetical conserved 99.7 3.5E-15 1.2E-19 129.7 19.5 195 247-444 2-211 (217)
38 1xnf_A Lipoprotein NLPI; TPR, 99.7 5.7E-15 1.9E-19 133.5 21.4 241 192-441 17-269 (275)
39 3u4t_A TPR repeat-containing p 99.7 9.1E-15 3.1E-19 132.0 21.9 246 182-431 5-268 (272)
40 2h6f_A Protein farnesyltransfe 99.7 1.9E-14 6.4E-19 135.4 23.3 248 179-431 96-366 (382)
41 3e4b_A ALGK; tetratricopeptide 99.7 3.8E-15 1.3E-19 144.5 19.1 376 50-447 8-421 (452)
42 3spa_A Mtrpol, DNA-directed RN 99.6 1.6E-16 5.4E-21 159.6 8.3 143 149-295 127-286 (1134)
43 2pl2_A Hypothetical conserved 99.6 2.5E-14 8.5E-19 124.3 21.2 194 179-378 4-211 (217)
44 3spa_A Mtrpol, DNA-directed RN 99.6 3.2E-16 1.1E-20 157.5 9.6 116 249-365 126-249 (1134)
45 1ouv_A Conserved hypothetical 99.6 2.4E-13 8.2E-18 122.8 27.3 224 179-448 5-252 (273)
46 2ho1_A Type 4 fimbrial biogene 99.6 1.7E-13 5.9E-18 122.0 24.2 205 180-419 37-244 (252)
47 4a1s_A PINS, partner of inscut 99.6 1.7E-14 5.9E-19 138.7 18.8 262 185-447 53-372 (411)
48 1ouv_A Conserved hypothetical 99.6 5.9E-13 2E-17 120.2 27.8 187 148-343 5-213 (273)
49 3u4t_A TPR repeat-containing p 99.6 7.4E-14 2.5E-18 126.0 21.7 230 215-448 3-251 (272)
50 2h6f_A Protein farnesyltransfe 99.6 7E-14 2.4E-18 131.5 22.2 228 215-447 97-348 (382)
51 2q7f_A YRRB protein; TPR, prot 99.6 2.4E-14 8.1E-19 126.8 18.0 206 218-427 26-236 (243)
52 3e4b_A ALGK; tetratricopeptide 99.6 1.3E-13 4.4E-18 133.8 24.3 336 96-450 17-390 (452)
53 3sf4_A G-protein-signaling mod 99.6 6.4E-14 2.2E-18 134.3 21.0 268 150-417 10-340 (406)
54 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.9E-14 1.7E-18 127.3 19.0 237 162-407 18-269 (275)
55 3ro2_A PINS homolog, G-protein 99.6 2.4E-14 8.4E-19 133.2 17.3 264 183-447 8-332 (338)
56 2vq2_A PILW, putative fimbrial 99.6 4.9E-13 1.7E-17 116.6 24.5 133 284-418 79-216 (225)
57 2ho1_A Type 4 fimbrial biogene 99.6 4.8E-13 1.7E-17 119.1 24.3 194 149-344 37-237 (252)
58 2vq2_A PILW, putative fimbrial 99.6 3.4E-13 1.2E-17 117.6 22.7 198 248-447 6-211 (225)
59 2q7f_A YRRB protein; TPR, prot 99.6 9E-14 3.1E-18 123.0 17.8 198 248-448 21-223 (243)
60 3sf4_A G-protein-signaling mod 99.5 4.8E-14 1.6E-18 135.1 13.5 261 118-378 9-333 (406)
61 3vtx_A MAMA; tetratricopeptide 99.5 1.2E-12 4E-17 110.4 20.2 165 280-447 4-170 (184)
62 4abn_A Tetratricopeptide repea 99.5 1.5E-13 5E-18 134.3 16.1 192 248-443 100-317 (474)
63 4a1s_A PINS, partner of inscut 99.5 3.6E-13 1.2E-17 129.4 17.4 234 183-416 89-375 (411)
64 3ulq_A Response regulator aspa 99.5 3E-12 1E-16 121.7 21.3 227 186-412 109-367 (383)
65 3ro2_A PINS homolog, G-protein 99.5 8.7E-13 3E-17 122.6 17.0 235 182-416 45-335 (338)
66 3ulq_A Response regulator aspa 99.5 1.5E-12 5E-17 123.9 18.4 225 221-446 109-367 (383)
67 4e6h_A MRNA 3'-END-processing 99.5 3.1E-10 1.1E-14 113.9 34.1 403 41-448 62-571 (679)
68 3nf1_A KLC 1, kinesin light ch 99.5 2.1E-13 7.3E-18 125.4 10.4 165 179-343 26-222 (311)
69 2ond_A Cleavage stimulation fa 99.5 8.1E-11 2.8E-15 108.1 27.5 218 197-418 33-275 (308)
70 1hz4_A MALT regulatory protein 99.4 1.4E-10 4.8E-15 109.7 29.2 264 184-447 18-322 (373)
71 3q15_A PSP28, response regulat 99.4 5.9E-11 2E-15 112.5 25.7 227 185-412 106-364 (378)
72 2ond_A Cleavage stimulation fa 99.4 6.3E-11 2.2E-15 108.8 24.8 212 232-448 33-271 (308)
73 3vtx_A MAMA; tetratricopeptide 99.4 4.2E-11 1.4E-15 100.8 21.3 162 179-343 4-168 (184)
74 3nf1_A KLC 1, kinesin light ch 99.4 1.3E-12 4.5E-17 120.1 12.7 246 148-415 26-309 (311)
75 4gyw_A UDP-N-acetylglucosamine 99.4 9.3E-12 3.2E-16 126.5 18.5 163 281-446 9-173 (723)
76 4abn_A Tetratricopeptide repea 99.4 1.6E-11 5.3E-16 119.9 18.9 208 196-408 84-316 (474)
77 3as5_A MAMA; tetratricopeptide 99.4 2.8E-11 9.4E-16 101.8 17.3 130 316-447 42-173 (186)
78 4i17_A Hypothetical protein; T 99.4 3E-11 1E-15 105.6 17.6 190 248-447 5-209 (228)
79 3q15_A PSP28, response regulat 99.4 2.9E-11 1E-15 114.6 18.8 226 220-446 106-364 (378)
80 4i17_A Hypothetical protein; T 99.3 1.2E-10 4.2E-15 101.7 19.3 204 213-427 5-223 (228)
81 3as5_A MAMA; tetratricopeptide 99.3 5.2E-10 1.8E-14 93.8 21.5 152 154-307 13-170 (186)
82 4e6h_A MRNA 3'-END-processing 99.3 1.5E-08 5.1E-13 101.8 34.9 383 61-449 48-535 (679)
83 1hz4_A MALT regulatory protein 99.3 1.9E-09 6.3E-14 101.9 26.4 232 183-414 56-323 (373)
84 4gyw_A UDP-N-acetylglucosamine 99.2 3.2E-10 1.1E-14 115.2 20.1 162 179-343 8-172 (723)
85 1qqe_A Vesicular transport pro 99.2 1.4E-10 4.9E-15 105.5 15.8 187 258-444 45-266 (292)
86 3edt_B KLC 2, kinesin light ch 99.2 5E-11 1.7E-15 107.7 12.0 152 192-343 13-196 (283)
87 1qqe_A Vesicular transport pro 99.2 3.4E-10 1.2E-14 103.0 16.5 215 165-416 33-272 (292)
88 3qky_A Outer membrane assembly 99.2 1.7E-09 5.9E-14 96.6 19.3 208 247-494 12-248 (261)
89 3edt_B KLC 2, kinesin light ch 99.2 1.1E-09 3.9E-14 98.6 18.1 130 180-309 43-197 (283)
90 3mv2_B Coatomer subunit epsilo 99.2 3.8E-09 1.3E-13 94.3 19.8 239 159-419 23-288 (310)
91 3mv2_B Coatomer subunit epsilo 99.1 8.1E-09 2.8E-13 92.2 21.1 241 129-384 24-286 (310)
92 3qky_A Outer membrane assembly 99.1 2.3E-09 8E-14 95.7 17.1 202 213-436 13-250 (261)
93 2yhc_A BAMD, UPF0169 lipoprote 99.1 6.4E-09 2.2E-13 90.5 19.0 186 249-451 3-217 (225)
94 2fo7_A Synthetic consensus TPR 99.1 2.9E-09 9.8E-14 83.9 14.6 126 320-447 5-132 (136)
95 2pzi_A Probable serine/threoni 99.1 6E-10 2.1E-14 113.7 11.7 167 261-431 402-581 (681)
96 4ga2_A E3 SUMO-protein ligase 99.0 2.4E-10 8.3E-15 92.4 6.4 141 289-433 5-149 (150)
97 2fo7_A Synthetic consensus TPR 99.0 1.6E-08 5.4E-13 79.5 17.0 126 182-309 3-131 (136)
98 3qou_A Protein YBBN; thioredox 99.0 9.9E-09 3.4E-13 92.9 17.4 176 267-446 103-283 (287)
99 3rjv_A Putative SEL1 repeat pr 99.0 2.6E-08 8.8E-13 85.6 19.1 161 280-449 17-199 (212)
100 3urz_A Uncharacterized protein 99.0 1.7E-08 5.7E-13 86.6 17.5 23 186-208 10-32 (208)
101 2pzi_A Probable serine/threoni 99.0 2.7E-08 9.4E-13 101.5 21.1 189 226-419 402-608 (681)
102 3urz_A Uncharacterized protein 99.0 1.9E-08 6.6E-13 86.2 16.8 186 118-319 4-193 (208)
103 2ifu_A Gamma-SNAP; membrane fu 99.0 1.9E-08 6.6E-13 92.0 17.9 220 193-440 4-254 (307)
104 4ga2_A E3 SUMO-protein ligase 99.0 9.7E-10 3.3E-14 88.8 8.1 123 322-447 3-129 (150)
105 2uy1_A Cleavage stimulation fa 99.0 1.9E-06 6.4E-11 84.0 32.2 349 47-412 17-412 (493)
106 3dra_A Protein farnesyltransfe 99.0 9E-07 3.1E-11 79.8 27.3 228 193-425 46-300 (306)
107 3dra_A Protein farnesyltransfe 98.9 1.7E-07 5.7E-12 84.6 21.8 214 229-446 47-286 (306)
108 2r5s_A Uncharacterized protein 98.9 2E-08 6.9E-13 83.5 14.5 156 287-446 12-172 (176)
109 3qou_A Protein YBBN; thioredox 98.9 5.9E-08 2E-12 87.8 18.5 162 214-377 116-280 (287)
110 2vsy_A XCC0866; transferase, g 98.9 1.4E-08 4.9E-13 101.7 15.8 160 263-425 2-169 (568)
111 2ifu_A Gamma-SNAP; membrane fu 98.9 7.8E-09 2.7E-13 94.7 12.2 197 227-445 3-222 (307)
112 3rjv_A Putative SEL1 repeat pr 98.9 1.1E-07 3.6E-12 81.8 18.0 156 179-343 17-195 (212)
113 2r5s_A Uncharacterized protein 98.9 3.2E-08 1.1E-12 82.3 14.2 56 121-176 9-67 (176)
114 3gyz_A Chaperone protein IPGC; 98.9 1.2E-08 4.2E-13 81.9 10.6 102 347-448 30-134 (151)
115 2yhc_A BAMD, UPF0169 lipoprote 98.9 1.5E-07 5E-12 81.8 18.0 57 322-378 153-210 (225)
116 2vsy_A XCC0866; transferase, g 98.9 6.1E-08 2.1E-12 97.0 17.0 147 228-378 2-154 (568)
117 1hh8_A P67PHOX, NCF-2, neutrop 98.8 2.1E-07 7.1E-12 79.9 18.0 91 153-244 10-100 (213)
118 3u3w_A Transcriptional activat 98.8 6.6E-07 2.3E-11 81.1 22.1 160 287-446 81-265 (293)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.8 8.7E-08 3E-12 82.3 15.5 125 319-448 9-151 (213)
120 2vgx_A Chaperone SYCD; alterna 98.8 2.7E-08 9.1E-13 80.0 10.9 97 351-447 20-118 (148)
121 2qfc_A PLCR protein; TPR, HTH, 98.8 1.8E-07 6.1E-12 84.9 17.4 164 283-446 77-265 (293)
122 4gco_A Protein STI-1; structur 98.8 5.9E-08 2E-12 75.5 11.7 93 354-446 15-109 (126)
123 4gco_A Protein STI-1; structur 98.8 1.1E-07 3.7E-12 74.0 12.6 114 312-427 8-124 (126)
124 1a17_A Serine/threonine protei 98.8 1.4E-07 4.8E-12 77.2 13.9 128 317-446 14-145 (166)
125 2uy1_A Cleavage stimulation fa 98.7 1.5E-06 5.1E-11 84.7 21.6 356 57-446 6-412 (493)
126 2lni_A Stress-induced-phosphop 98.7 2.4E-07 8.4E-12 72.5 13.0 117 315-433 15-133 (133)
127 3u3w_A Transcriptional activat 98.7 1.3E-06 4.4E-11 79.2 19.6 61 283-343 198-264 (293)
128 4f3v_A ESX-1 secretion system 98.7 2.5E-07 8.5E-12 81.5 14.0 192 227-424 18-247 (282)
129 2vyi_A SGTA protein; chaperone 98.7 2.7E-07 9.3E-12 71.8 13.0 118 316-435 12-131 (131)
130 3q7a_A Farnesyltransferase alp 98.7 2E-05 6.7E-10 71.9 26.7 230 188-422 62-341 (349)
131 1na0_A Designed protein CTPR3; 98.7 3.7E-07 1.3E-11 70.4 13.6 115 316-432 9-125 (125)
132 2c2l_A CHIP, carboxy terminus 98.7 4.3E-08 1.5E-12 88.3 9.2 50 397-446 148-198 (281)
133 2xcb_A PCRH, regulatory protei 98.7 2.9E-07 1E-11 73.3 13.1 97 351-447 17-115 (142)
134 2qfc_A PLCR protein; TPR, HTH, 98.7 8.8E-07 3E-11 80.3 17.8 163 251-413 76-266 (293)
135 3upv_A Heat shock protein STI1 98.7 2.7E-07 9.2E-12 71.7 11.8 96 352-447 4-101 (126)
136 1p5q_A FKBP52, FK506-binding p 98.6 3.7E-07 1.3E-11 84.5 14.2 128 318-445 149-292 (336)
137 3gw4_A Uncharacterized protein 98.6 3.6E-07 1.2E-11 77.6 12.6 116 161-276 4-133 (203)
138 4f3v_A ESX-1 secretion system 98.6 3.2E-06 1.1E-10 74.5 18.3 179 96-277 20-235 (282)
139 1a17_A Serine/threonine protei 98.6 1.6E-06 5.5E-11 70.7 15.8 93 182-276 15-107 (166)
140 2e2e_A Formate-dependent nitri 98.6 1.3E-07 4.3E-12 78.6 9.0 117 329-447 23-144 (177)
141 3q7a_A Farnesyltransferase alp 98.6 5.6E-06 1.9E-10 75.4 19.3 218 226-447 65-331 (349)
142 3gw4_A Uncharacterized protein 98.6 3.5E-06 1.2E-10 71.4 17.2 25 319-343 110-134 (203)
143 2kck_A TPR repeat; tetratricop 98.6 4.1E-07 1.4E-11 68.6 10.1 98 352-449 6-108 (112)
144 2c2l_A CHIP, carboxy terminus 98.5 2.8E-07 9.5E-12 83.0 10.0 189 215-413 4-199 (281)
145 3gyz_A Chaperone protein IPGC; 98.5 1.1E-06 3.8E-11 70.4 12.3 93 182-276 38-130 (151)
146 1na0_A Designed protein CTPR3; 98.5 3.7E-06 1.3E-10 64.6 15.0 93 181-275 10-102 (125)
147 4gcn_A Protein STI-1; structur 98.5 3.7E-07 1.3E-11 71.0 9.1 94 353-446 9-111 (127)
148 3q49_B STIP1 homology and U bo 98.5 1.1E-06 3.7E-11 69.3 11.9 98 350-447 7-106 (137)
149 3sz7_A HSC70 cochaperone (SGT) 98.5 6.8E-07 2.3E-11 73.1 10.8 109 315-425 10-120 (164)
150 1hxi_A PEX5, peroxisome target 98.5 4.7E-07 1.6E-11 69.7 9.1 93 355-447 20-114 (121)
151 2vyi_A SGTA protein; chaperone 98.5 3.1E-06 1E-10 65.7 14.1 94 181-276 13-106 (131)
152 2fbn_A 70 kDa peptidylprolyl i 98.5 9.6E-07 3.3E-11 74.8 11.8 96 353-448 89-187 (198)
153 2lni_A Stress-induced-phosphop 98.5 2.8E-06 9.5E-11 66.3 13.7 97 179-277 15-111 (133)
154 2e2e_A Formate-dependent nitri 98.5 1.6E-06 5.4E-11 71.9 12.8 127 292-421 21-152 (177)
155 2vgx_A Chaperone SYCD; alterna 98.5 1.1E-06 3.9E-11 70.4 11.1 91 218-309 24-117 (148)
156 1elw_A TPR1-domain of HOP; HOP 98.5 2.6E-06 8.8E-11 64.7 12.7 108 318-427 6-115 (118)
157 3dss_A Geranylgeranyl transfer 98.5 3.7E-05 1.3E-09 69.7 22.0 231 192-428 41-319 (331)
158 1elw_A TPR1-domain of HOP; HOP 98.5 1.7E-06 5.9E-11 65.7 11.3 97 352-448 4-102 (118)
159 2dba_A Smooth muscle cell asso 98.5 2.2E-06 7.4E-11 68.4 12.3 95 352-446 28-127 (148)
160 3sz7_A HSC70 cochaperone (SGT) 98.4 2.8E-06 9.7E-11 69.3 12.9 94 282-378 12-105 (164)
161 3upv_A Heat shock protein STI1 98.4 2.2E-06 7.6E-11 66.4 11.5 110 317-428 5-122 (126)
162 1p5q_A FKBP52, FK506-binding p 98.4 4.1E-06 1.4E-10 77.5 15.1 118 180-300 147-283 (336)
163 2fbn_A 70 kDa peptidylprolyl i 98.4 6.9E-07 2.3E-11 75.7 8.8 114 161-276 16-148 (198)
164 2dba_A Smooth muscle cell asso 98.4 5.5E-06 1.9E-10 66.0 13.6 111 315-428 27-143 (148)
165 2xcb_A PCRH, regulatory protei 98.4 2E-06 6.7E-11 68.4 10.7 105 317-423 19-125 (142)
166 3rkv_A Putative peptidylprolyl 98.4 2.8E-06 9.5E-11 69.3 11.7 64 384-447 63-126 (162)
167 4gcn_A Protein STI-1; structur 98.4 5.4E-06 1.9E-10 64.3 12.6 89 220-309 13-111 (127)
168 2hr2_A Hypothetical protein; a 98.4 1.3E-06 4.5E-11 69.3 9.0 63 385-447 58-131 (159)
169 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 4.5E-06 1.5E-10 80.7 14.1 96 352-447 317-415 (457)
170 4b4t_Q 26S proteasome regulato 98.4 8E-06 2.8E-10 78.5 15.6 118 328-445 107-243 (434)
171 1wao_1 Serine/threonine protei 98.3 1.7E-06 5.9E-11 84.1 10.7 119 323-443 13-135 (477)
172 3dss_A Geranylgeranyl transfer 98.3 0.0002 7E-09 64.9 23.1 218 226-447 40-304 (331)
173 2xev_A YBGF; tetratricopeptide 98.3 2.3E-06 7.7E-11 66.6 9.0 90 358-447 8-105 (129)
174 3q49_B STIP1 homology and U bo 98.3 5.2E-06 1.8E-10 65.2 11.2 101 314-416 7-109 (137)
175 4b4t_Q 26S proteasome regulato 98.3 3.7E-05 1.3E-09 73.8 18.7 192 187-378 11-242 (434)
176 2kck_A TPR repeat; tetratricop 98.3 6.6E-06 2.3E-10 61.7 10.5 92 182-275 8-102 (112)
177 1elr_A TPR2A-domain of HOP; HO 98.3 3.7E-06 1.3E-10 65.3 9.0 107 319-428 7-122 (131)
178 1elr_A TPR2A-domain of HOP; HO 98.3 4.1E-06 1.4E-10 65.0 9.2 96 352-447 4-108 (131)
179 1hxi_A PEX5, peroxisome target 98.3 9E-06 3.1E-10 62.4 10.9 93 183-277 20-112 (121)
180 3ro3_A PINS homolog, G-protein 98.2 3.7E-06 1.3E-10 68.0 8.9 128 319-446 12-157 (164)
181 1wao_1 Serine/threonine protei 98.2 1.5E-05 5.1E-10 77.5 14.5 116 258-376 14-134 (477)
182 3n71_A Histone lysine methyltr 98.2 1.6E-05 5.4E-10 76.8 14.3 124 325-448 318-465 (490)
183 3k9i_A BH0479 protein; putativ 98.2 1.1E-06 3.8E-11 67.1 5.0 81 366-446 4-89 (117)
184 2xev_A YBGF; tetratricopeptide 98.2 1.8E-05 6.2E-10 61.3 12.1 102 322-423 8-115 (129)
185 2if4_A ATFKBP42; FKBP-like, al 98.2 2.8E-06 9.7E-11 78.6 8.1 148 281-448 179-329 (338)
186 1ihg_A Cyclophilin 40; ppiase 98.2 1.2E-05 4.2E-10 75.2 12.3 137 282-440 224-363 (370)
187 3ro3_A PINS homolog, G-protein 98.1 1.5E-05 5.3E-10 64.3 10.3 96 318-413 51-158 (164)
188 3rkv_A Putative peptidylprolyl 98.1 6.1E-06 2.1E-10 67.2 7.7 76 352-427 63-141 (162)
189 1dce_A Protein (RAB geranylger 98.1 0.00017 5.7E-09 71.4 19.2 137 297-436 89-244 (567)
190 3k9i_A BH0479 protein; putativ 98.1 4.6E-06 1.6E-10 63.6 5.5 91 329-420 3-97 (117)
191 2if4_A ATFKBP42; FKBP-like, al 98.0 1.8E-05 6.2E-10 73.1 10.0 152 250-418 179-333 (338)
192 2l6j_A TPR repeat-containing p 98.0 2.7E-06 9.2E-11 64.0 3.4 93 351-443 3-103 (111)
193 3ma5_A Tetratricopeptide repea 98.0 2.9E-05 9.8E-10 57.2 8.9 65 383-447 6-70 (100)
194 2hr2_A Hypothetical protein; a 98.0 3.3E-05 1.1E-09 61.3 9.4 102 322-423 17-141 (159)
195 1ihg_A Cyclophilin 40; ppiase 98.0 6.8E-05 2.3E-09 70.1 12.7 91 179-271 272-362 (370)
196 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 0.0001 3.6E-09 71.1 14.3 119 180-301 268-405 (457)
197 2kat_A Uncharacterized protein 98.0 2.7E-05 9.1E-10 59.0 7.9 77 371-447 4-82 (115)
198 1na3_A Designed protein CTPR2; 97.9 7.2E-05 2.5E-09 53.6 8.9 81 352-432 9-91 (91)
199 1zu2_A Mitochondrial import re 97.8 1.3E-05 4.6E-10 63.4 3.4 85 364-448 14-121 (158)
200 1klx_A Cysteine rich protein B 97.7 0.00066 2.3E-08 53.2 12.7 109 195-311 10-127 (138)
201 3qwp_A SET and MYND domain-con 97.7 0.0002 7E-09 68.0 11.3 117 359-493 294-428 (429)
202 1klx_A Cysteine rich protein B 97.7 0.00046 1.6E-08 54.1 11.6 90 358-449 31-128 (138)
203 3n71_A Histone lysine methyltr 97.7 0.00021 7.2E-09 69.0 11.2 93 252-344 353-463 (490)
204 2l6j_A TPR repeat-containing p 97.7 0.00013 4.5E-09 54.5 7.9 66 383-448 3-68 (111)
205 1na3_A Designed protein CTPR2; 97.7 0.00058 2E-08 48.6 11.0 82 180-263 9-90 (91)
206 1dce_A Protein (RAB geranylger 97.6 0.0025 8.7E-08 63.0 18.1 170 196-370 45-244 (567)
207 1pc2_A Mitochondria fission pr 97.6 0.00042 1.4E-08 54.2 9.5 91 382-498 30-125 (152)
208 3bee_A Putative YFRE protein; 97.6 0.00037 1.3E-08 50.1 8.6 68 382-449 4-74 (93)
209 3qww_A SET and MYND domain-con 97.5 0.00027 9.1E-09 67.1 9.0 83 364-446 310-410 (433)
210 2kat_A Uncharacterized protein 97.4 0.00072 2.5E-08 50.9 9.1 76 199-276 4-79 (115)
211 1zu2_A Mitochondrial import re 97.3 0.00089 3.1E-08 53.0 7.8 71 192-264 14-94 (158)
212 3ma5_A Tetratricopeptide repea 97.2 0.0014 4.8E-08 47.8 8.2 60 249-308 6-68 (100)
213 3qww_A SET and MYND domain-con 97.2 0.0015 5E-08 62.0 10.2 93 328-420 310-423 (433)
214 2kc7_A BFR218_protein; tetratr 97.2 0.0009 3.1E-08 48.6 6.9 61 360-420 8-71 (99)
215 3qwp_A SET and MYND domain-con 97.1 0.0047 1.6E-07 58.7 12.7 98 323-420 294-412 (429)
216 1wy6_A Hypothetical protein ST 97.1 0.017 5.7E-07 43.4 12.2 141 291-450 17-157 (172)
217 3ly7_A Transcriptional activat 97.1 0.015 5.1E-07 53.0 14.7 137 279-417 192-343 (372)
218 1qsa_A Protein (soluble lytic 97.0 0.29 1E-05 48.4 28.0 114 295-412 228-347 (618)
219 3mkq_A Coatomer beta'-subunit; 97.0 0.055 1.9E-06 56.2 21.0 97 160-276 610-707 (814)
220 3ly7_A Transcriptional activat 97.0 0.013 4.6E-07 53.3 13.9 72 279-355 275-346 (372)
221 3mkq_A Coatomer beta'-subunit; 97.0 0.04 1.4E-06 57.3 19.9 129 122-275 633-761 (814)
222 2kc7_A BFR218_protein; tetratr 97.0 0.0047 1.6E-07 44.7 9.1 54 323-378 7-61 (99)
223 1nzn_A CGI-135 protein, fissio 96.9 0.0055 1.9E-07 46.0 8.7 88 382-495 33-125 (126)
224 3lvg_A Clathrin heavy chain 1; 96.9 4.9E-05 1.7E-09 70.5 -3.5 237 45-302 54-325 (624)
225 1y8m_A FIS1; mitochondria, unk 96.7 0.042 1.4E-06 42.0 12.2 92 381-498 36-131 (144)
226 3u64_A Protein TP_0956; tetrat 96.7 0.24 8.1E-06 43.3 18.5 79 197-277 180-267 (301)
227 2v5f_A Prolyl 4-hydroxylase su 96.5 0.019 6.6E-07 42.0 9.3 73 352-424 5-86 (104)
228 3bee_A Putative YFRE protein; 96.5 0.029 9.8E-07 40.0 9.6 68 349-416 3-75 (93)
229 3mkq_B Coatomer subunit alpha; 96.3 0.33 1.1E-05 38.9 16.6 100 161-277 17-116 (177)
230 3lvg_A Clathrin heavy chain 1; 96.2 2.5E-05 8.6E-10 72.4 -9.7 236 151-405 56-325 (624)
231 3u64_A Protein TP_0956; tetrat 96.0 0.023 7.9E-07 49.6 8.3 86 368-453 179-275 (301)
232 1pc2_A Mitochondria fission pr 96.0 0.03 1E-06 43.7 8.2 86 333-420 15-107 (152)
233 3o48_A Mitochondria fission 1 96.0 0.038 1.3E-06 41.6 8.2 90 380-495 36-129 (134)
234 3mkq_B Coatomer subunit alpha; 96.0 0.46 1.6E-05 38.1 16.3 104 124-240 11-114 (177)
235 2v5f_A Prolyl 4-hydroxylase su 95.8 0.1 3.4E-06 38.1 10.1 67 179-245 4-76 (104)
236 1wy6_A Hypothetical protein ST 95.8 0.2 6.7E-06 37.8 11.0 116 130-246 19-156 (172)
237 1nzn_A CGI-135 protein, fissio 94.5 0.37 1.2E-05 36.2 9.5 87 332-420 17-110 (126)
238 4ady_A RPN2, 26S proteasome re 94.2 5.9 0.0002 41.0 22.6 23 48-70 233-255 (963)
239 4h7y_A Dual specificity protei 94.2 0.63 2.1E-05 35.9 10.2 60 365-425 73-135 (161)
240 4h7y_A Dual specificity protei 94.1 0.12 4.2E-06 39.8 6.2 55 395-449 71-125 (161)
241 3lpz_A GET4 (YOR164C homolog); 93.5 4.1 0.00014 36.5 17.7 24 47-70 37-60 (336)
242 2wpv_A GET4, UPF0363 protein Y 93.4 4.1 0.00014 36.2 17.6 52 148-199 133-187 (312)
243 4b4t_P 26S proteasome regulato 93.2 3.8 0.00013 38.8 16.5 185 193-378 29-244 (445)
244 2ff4_A Probable regulatory pro 93.1 0.19 6.5E-06 46.8 7.2 70 386-455 173-247 (388)
245 4gns_B Protein CSD3, chitin bi 92.9 0.36 1.2E-05 48.8 9.2 54 391-444 344-397 (754)
246 4ady_A RPN2, 26S proteasome re 92.8 10 0.00035 39.3 19.8 149 159-309 500-657 (963)
247 1v54_E Cytochrome C oxidase po 92.8 1.2 4E-05 31.6 8.8 64 296-361 25-88 (109)
248 4gns_B Protein CSD3, chitin bi 91.7 12 0.00042 37.8 24.7 81 213-295 611-708 (754)
249 1qsa_A Protein (soluble lytic 91.4 12 0.00041 37.0 28.3 362 55-446 16-409 (618)
250 4fhn_B Nucleoporin NUP120; pro 91.0 13 0.00044 40.2 19.2 118 249-369 841-988 (1139)
251 3lpz_A GET4 (YOR164C homolog); 90.6 9.1 0.00031 34.2 23.1 181 126-343 20-214 (336)
252 2wpv_A GET4, UPF0363 protein Y 90.3 9.3 0.00032 33.9 22.4 182 126-344 21-216 (312)
253 3ltm_A Alpha-REP4; protein eng 90.3 6.8 0.00023 32.3 19.6 46 118-163 33-78 (211)
254 4fhn_B Nucleoporin NUP120; pro 90.1 9.8 0.00033 41.1 17.3 145 154-299 817-989 (1139)
255 2y69_E Cytochrome C oxidase su 89.8 3 0.0001 31.4 8.8 64 296-361 68-131 (152)
256 3ltm_A Alpha-REP4; protein eng 89.2 8.4 0.00029 31.7 19.3 54 142-195 26-79 (211)
257 3ffl_A Anaphase-promoting comp 89.1 2.9 9.9E-05 32.9 9.0 21 358-378 128-148 (167)
258 3txn_A 26S proteasome regulato 88.8 15 0.0005 34.0 18.4 162 216-377 20-206 (394)
259 2uwj_G Type III export protein 88.7 4.8 0.00016 28.3 9.7 61 156-219 46-106 (115)
260 3ffl_A Anaphase-promoting comp 88.5 3.3 0.00011 32.6 8.9 69 41-111 16-92 (167)
261 2p58_C Putative type III secre 88.4 5.1 0.00017 28.3 10.1 61 156-219 47-107 (116)
262 2ff4_A Probable regulatory pro 88.3 4.4 0.00015 37.6 11.5 71 183-254 174-249 (388)
263 3ltj_A Alpharep-4; protein eng 88.1 9.5 0.00033 31.1 18.8 47 118-164 28-74 (201)
264 1v54_E Cytochrome C oxidase po 86.7 4 0.00014 28.9 7.4 59 198-257 28-86 (109)
265 3o48_A Mitochondria fission 1 86.4 3.8 0.00013 30.9 7.8 70 350-419 38-113 (134)
266 3ltj_A Alpharep-4; protein eng 86.4 12 0.00041 30.4 20.4 47 118-164 59-105 (201)
267 3esl_A Checkpoint serine/threo 85.9 7.2 0.00025 31.8 9.8 92 380-496 73-168 (202)
268 1y8m_A FIS1; mitochondria, unk 85.4 11 0.00036 28.9 10.6 71 349-419 36-112 (144)
269 4b4t_P 26S proteasome regulato 85.2 25 0.00087 33.1 21.2 199 162-377 29-263 (445)
270 1oyz_A Hypothetical protein YI 81.5 25 0.00087 30.3 21.6 9 403-411 253-261 (280)
271 1zbp_A Hypothetical protein VP 79.6 4.1 0.00014 35.0 6.4 56 361-416 6-63 (273)
272 1zbp_A Hypothetical protein VP 78.7 31 0.0011 29.7 11.8 119 290-419 6-135 (273)
273 4a1g_A Mitotic checkpoint seri 77.9 17 0.00059 28.1 8.9 77 372-451 55-134 (152)
274 2y69_E Cytochrome C oxidase su 77.8 14 0.00047 27.8 7.8 59 198-257 71-129 (152)
275 2uwj_G Type III export protein 76.1 18 0.00061 25.5 9.3 87 229-320 20-106 (115)
276 2p58_C Putative type III secre 75.2 19 0.00066 25.4 9.9 87 229-320 21-107 (116)
277 2wvi_A Mitotic checkpoint seri 74.9 24 0.00082 27.8 9.1 69 380-451 59-129 (164)
278 4b4t_R RPN7, 26S proteasome re 73.5 8.8 0.0003 36.1 7.7 96 318-413 133-237 (429)
279 4b4t_R RPN7, 26S proteasome re 68.9 59 0.002 30.4 12.2 33 415-449 344-376 (429)
280 1wdy_A 2-5A-dependent ribonucl 66.8 45 0.0015 28.5 10.6 114 50-175 7-128 (285)
281 2nsz_A Programmed cell death p 66.5 38 0.0013 25.3 9.4 63 153-215 11-78 (129)
282 2ion_A PDCD4, programmed cell 64.4 35 0.0012 26.4 8.0 62 153-214 13-79 (152)
283 4b4t_S RPN3, 26S proteasome re 61.9 52 0.0018 31.5 10.1 64 353-416 232-302 (523)
284 2qx5_A Nucleoporin NIC96; mRNA 59.9 1.4E+02 0.0049 29.7 18.1 89 360-451 451-568 (661)
285 1oyz_A Hypothetical protein YI 58.8 86 0.003 26.8 23.7 172 118-296 37-221 (280)
286 3txn_A 26S proteasome regulato 56.5 1.2E+02 0.0042 27.8 28.6 92 349-450 253-346 (394)
287 4b4t_S RPN3, 26S proteasome re 56.5 1.4E+02 0.0048 28.6 12.2 61 250-310 231-299 (523)
288 2pk8_A Uncharacterized protein 56.5 11 0.00037 25.9 3.2 26 476-501 14-39 (103)
289 3esl_A Checkpoint serine/threo 55.6 83 0.0028 25.6 10.7 55 194-248 93-148 (202)
290 4aez_C MAD3, mitotic spindle c 55.1 53 0.0018 27.3 7.9 69 380-451 113-183 (223)
291 2d2s_A Exocyst complex compone 54.2 76 0.0026 26.7 9.0 88 186-276 24-117 (235)
292 3mv2_A Coatomer subunit alpha; 53.9 1.2E+02 0.004 26.9 11.3 62 374-449 195-258 (325)
293 4a1g_A Mitotic checkpoint seri 53.8 47 0.0016 25.7 6.9 56 101-156 84-139 (152)
294 4gq2_M Nucleoporin NUP120; bet 53.4 1.6E+02 0.0053 31.0 13.1 127 155-295 816-950 (950)
295 2r9g_A AAA ATPase, central reg 51.0 98 0.0034 25.1 9.1 65 183-248 14-86 (204)
296 4gq2_M Nucleoporin NUP120; bet 48.2 2.1E+02 0.0071 30.1 13.1 129 123-264 815-950 (950)
297 2qx5_A Nucleoporin NIC96; mRNA 46.8 2.3E+02 0.0079 28.2 15.5 26 47-73 155-180 (661)
298 1ug3_A EIF4GI, eukaryotic prot 46.0 97 0.0033 27.8 9.0 26 122-147 15-40 (339)
299 2ion_A PDCD4, programmed cell 45.9 87 0.003 24.2 7.5 62 253-314 12-78 (152)
300 2d2s_A Exocyst complex compone 45.5 66 0.0022 27.1 7.2 89 50-144 23-117 (235)
301 3jxi_A Vanilloid receptor-rela 43.7 38 0.0013 28.7 5.8 57 51-109 8-73 (260)
302 3bge_A Predicted ATPase; struc 43.6 1.2E+02 0.0041 24.6 7.9 46 184-229 8-56 (201)
303 1wdy_A 2-5A-dependent ribonucl 43.0 1.3E+02 0.0044 25.4 9.3 50 125-174 9-61 (285)
304 1ug3_A EIF4GI, eukaryotic prot 42.5 1.9E+02 0.0064 25.9 12.1 92 152-243 14-113 (339)
305 2nsz_A Programmed cell death p 41.6 1.1E+02 0.0036 22.8 8.8 63 253-315 10-77 (129)
306 3ctd_A Putative ATPase, AAA fa 39.4 1.6E+02 0.0054 24.2 8.4 67 181-247 33-107 (213)
307 3mkr_B Coatomer subunit alpha; 39.1 1.5E+02 0.0052 26.2 8.6 62 374-449 186-249 (320)
308 3i5p_A Nucleoporin NUP170; hel 37.6 2.8E+02 0.0097 26.6 13.9 67 382-448 176-247 (525)
309 2zu6_B Programmed cell death p 36.9 82 0.0028 27.8 6.8 24 49-72 7-30 (307)
310 4aez_C MAD3, mitotic spindle c 36.7 66 0.0023 26.7 5.7 46 100-145 132-177 (223)
311 1te4_A Conserved protein MTH18 35.3 1.1E+02 0.0036 22.5 6.5 67 78-151 54-120 (131)
312 3ljn_A Hypothetical protein; a 34.6 1.5E+02 0.0051 26.5 8.7 83 127-210 26-111 (364)
313 2fe3_A Peroxide operon regulat 34.1 1.2E+02 0.0042 22.9 6.7 59 307-367 13-71 (145)
314 3kea_A K1L; tropism, ANK repea 34.0 1.7E+02 0.0059 25.0 8.6 92 358-454 132-224 (285)
315 3ygs_P Procaspase 9; apoptosis 33.2 72 0.0024 22.3 4.8 37 264-300 51-87 (97)
316 1k1a_A B-cell lymphoma 3-encod 33.1 1.5E+02 0.0053 24.1 8.0 87 51-144 12-102 (241)
317 3ygs_P Procaspase 9; apoptosis 32.9 73 0.0025 22.3 4.8 34 133-166 52-85 (97)
318 1ya0_A SMG-7 transcript varian 32.8 1.4E+02 0.005 28.4 8.2 48 394-441 162-209 (497)
319 1n11_A Ankyrin; clathrin, BAND 31.6 2.4E+02 0.0082 25.9 9.8 78 124-203 50-133 (437)
320 2xig_A Ferric uptake regulatio 29.8 1.7E+02 0.0058 22.3 6.9 59 307-367 18-76 (150)
321 2fe3_A Peroxide operon regulat 29.3 1.4E+02 0.0048 22.6 6.3 61 204-265 11-71 (145)
322 2w57_A Ferric uptake regulatio 28.5 1.9E+02 0.0063 22.1 6.9 63 69-135 6-69 (150)
323 2ijq_A Hypothetical protein; s 28.3 2.1E+02 0.0072 22.3 7.6 51 294-344 45-103 (161)
324 4ets_A Ferric uptake regulatio 27.5 1.4E+02 0.0049 23.2 6.1 71 298-369 14-86 (162)
325 2xig_A Ferric uptake regulatio 27.0 2.1E+02 0.0072 21.8 7.0 61 204-265 16-76 (150)
326 3kea_A K1L; tropism, ANK repea 26.3 1.2E+02 0.0042 26.0 6.2 16 128-143 102-117 (285)
327 2pnn_A Transient receptor pote 26.2 1.4E+02 0.0046 25.3 6.5 64 44-108 10-80 (273)
328 2w57_A Ferric uptake regulatio 26.1 1.8E+02 0.0062 22.2 6.5 61 204-265 6-67 (150)
329 1k1a_A B-cell lymphoma 3-encod 25.9 2.5E+02 0.0084 22.8 8.0 27 187-213 13-39 (241)
330 3hra_A Ankyrin repeat family p 25.2 2.5E+02 0.0085 22.0 8.6 17 260-276 113-129 (201)
331 3hra_A Ankyrin repeat family p 25.1 1.5E+02 0.0051 23.4 6.3 84 52-143 9-94 (201)
332 2zu6_B Programmed cell death p 25.0 3.5E+02 0.012 23.7 15.4 26 122-147 7-32 (307)
333 2ijq_A Hypothetical protein; s 24.9 2.5E+02 0.0084 21.9 7.7 30 229-258 46-77 (161)
334 2fu4_A Ferric uptake regulatio 23.4 1.6E+02 0.0056 19.3 6.5 60 204-264 6-66 (83)
335 2etb_A Transient receptor pote 23.1 2.9E+02 0.0099 22.8 8.0 93 51-144 5-113 (256)
336 2p1h_A APAF-1, apoptotic prote 23.0 1.9E+02 0.0064 19.8 7.3 35 263-297 49-83 (94)
337 2rfa_A Transient receptor pote 22.5 1.7E+02 0.0058 23.8 6.2 19 51-69 6-24 (232)
338 1mzb_A Ferric uptake regulatio 22.5 2.3E+02 0.008 21.0 6.4 60 205-265 8-68 (136)
339 1te4_A Conserved protein MTH18 22.5 2.3E+02 0.0077 20.6 7.1 48 118-165 56-103 (131)
340 3kae_A CDC27, possible protein 22.5 2.9E+02 0.01 21.9 12.9 114 125-240 9-139 (242)
341 3eu9_A Huntingtin-interacting 22.2 1E+02 0.0034 25.2 4.8 55 391-446 181-235 (240)
342 2o03_A Probable zinc uptake re 20.4 1.5E+02 0.0052 21.9 4.8 44 287-330 16-59 (131)
343 2b7e_A PRE-mRNA processing pro 20.1 1.1E+02 0.0037 19.2 3.1 30 61-90 2-31 (59)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.9e-36 Score=307.42 Aligned_cols=396 Identities=10% Similarity=-0.060 Sum_probs=346.4
Q ss_pred CCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchH
Q 010496 40 STVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVM 119 (509)
Q Consensus 40 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 119 (509)
.+.+++..|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..++... |+.+.|..++..+... |.++.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~---~~~~~ 151 (597)
T 2xpi_A 79 DSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCT--GDYARAKCLLTKEDLY---NRSSA 151 (597)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHT--TCHHHHHHHHHHTCGG---GTCHH
T ss_pred chHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHc--CcHHHHHHHHHHHhcc---ccchh
Confidence 3457888999999999999999999999999986 568888999999999999 9999999999887654 34489
Q ss_pred HHHHHHHHHHhcCCchHHHHHHHhcCCCC-------------------hHHHHHHHHHHHhCCCHHHHHHHHhcCC----
Q 010496 120 VGTALLDMYAKFGRMDLATVVFDAMRVKS-------------------SFTWNAMIDGYMRRGDIESAVRMFDEMP---- 176 (509)
Q Consensus 120 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~---- 176 (509)
+++.++.+|.+.|++++|+++|+++...+ ..+|+.++.+|.+.|++++|.++|+++.
T Consensus 152 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 231 (597)
T 2xpi_A 152 CRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA 231 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999654433 7789999999999999888888877652
Q ss_pred --------------------------------------------------------------------C--CCHhHHHHH
Q 010496 177 --------------------------------------------------------------------V--RDAISWTAL 186 (509)
Q Consensus 177 --------------------------------------------------------------------~--~~~~~~~~l 186 (509)
. ++..+|+.+
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 311 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCK 311 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHH
T ss_pred hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHH
Confidence 1 356678888
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCH
Q 010496 187 LNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCI 266 (509)
Q Consensus 187 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 266 (509)
+..|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..+++.++.+|.+.|++
T Consensus 312 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~ 389 (597)
T 2xpi_A 312 ADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKI 389 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccH
Confidence 888899999999999999988765 4467788888889999999999999999988765 67888999999999999999
Q ss_pred HHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 267 EFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 267 ~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.
T Consensus 390 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 468 (597)
T 2xpi_A 390 SEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSY 468 (597)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999875 3467899999999999999999999999999863 4477899999999999999999999999998
Q ss_pred HhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010496 344 KIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-------PMKPN--EVVLGSLLAACRTKGDIILAERLMKYLVDLD 414 (509)
Q Consensus 344 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 414 (509)
+. .+.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+
T Consensus 469 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 546 (597)
T 2xpi_A 469 AL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546 (597)
T ss_dssp HH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred Hh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 53 2447889999999999999999999999887 44777 7899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 415 PGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 415 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
|.++.+|..++.+|.+.|++++|.++|+++.+.
T Consensus 547 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999875
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.7e-33 Score=284.21 Aligned_cols=378 Identities=11% Similarity=-0.001 Sum_probs=319.4
Q ss_pred HHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCc
Q 010496 55 HCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRM 134 (509)
Q Consensus 55 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 134 (509)
+.+.|....+...+..+. .++...|+.++..+.+. |+++.|..++..+.... |+ ..++..++.+|.+.|++
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--g~~~~A~~~~~~~~~~~--p~-~~~~~~l~~~~~~~g~~ 133 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQ--QQYKCAAFVGEKVLDIT--GN-PNDAFWLAQVYCCTGDY 133 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH--CC-HHHHHHHHHHHHHTTCH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHc--cCchHHHHHHHHHHhhC--CC-chHHHHHHHHHHHcCcH
Confidence 445666666666666553 36788999999999999 99999999999998664 66 68889999999999999
Q ss_pred hHHHHHHHhcC--CCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC-------------------CHhHHHHHHHHHHHc
Q 010496 135 DLATVVFDAMR--VKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVR-------------------DAISWTALLNGFVKR 193 (509)
Q Consensus 135 ~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~ 193 (509)
++|+.+|+++. .++..+++.++.+|.+.|++++|.++|+++.+. +..+|+.++.+|.+.
T Consensus 134 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 213 (597)
T 2xpi_A 134 ARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL 213 (597)
T ss_dssp HHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc
Confidence 99999999994 568999999999999999999999999965444 388999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHhHHHHH--------------------------------------HHHHHccCCHHHHH
Q 010496 194 GYFEEALECFREMQISGVEPDYVTIISV--------------------------------------LNACANVGTLGIGL 235 (509)
Q Consensus 194 ~~~~~A~~~~~~m~~~~~~p~~~~~~~l--------------------------------------~~~~~~~~~~~~a~ 235 (509)
|++++|.++|++|.+.+ +.+...+..+ +..|.+.|++++|.
T Consensus 214 g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 292 (597)
T 2xpi_A 214 SNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAE 292 (597)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHH
Confidence 99999999999998864 2233333322 44566789999999
Q ss_pred HHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 010496 236 WIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGF 312 (509)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 312 (509)
++|+++.+. +++..+++.++.+|.+.|++++|.++|+++. ..+..+|..++.++.+.|++++|..+++++.+. .
T Consensus 293 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~ 369 (597)
T 2xpi_A 293 DYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-H 369 (597)
T ss_dssp HHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-C
T ss_pred HHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-C
Confidence 999998876 6889999999999999999999999999986 347789999999999999999999999999975 3
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHH
Q 010496 313 KPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSL 390 (509)
Q Consensus 313 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l 390 (509)
+.+..++..++..|.+.|++++|.++|+++.+. .+.+..+|+.++.+|.+.|++++|+++|+++ ...| +..+|..+
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l 447 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTM--DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFL 447 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHH
Confidence 457889999999999999999999999999852 2346889999999999999999999999987 3344 78899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 391 LAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+.+|.+.|++++|.++|+++.+..|.++.+|..++.+|.+.|++++|.++|+++.+.
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999876
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=2.7e-28 Score=233.66 Aligned_cols=372 Identities=13% Similarity=0.135 Sum_probs=314.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHhhCCCCCCcc-cHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Q 010496 51 SISRHCRSGRIAEAALEFTRMTLHGTNPNHI-TFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYA 129 (509)
Q Consensus 51 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 129 (509)
+...+.+.|++++|+..+..+.+. .|+.. .+..+...+... ++.+.|...+....+.. |.+..++..+..+|.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~--~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~ 78 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQC--RRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYK 78 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHH
Confidence 456778899999999999999874 56554 444444555666 89999999999888874 777999999999999
Q ss_pred hcCCchHHHHHHHhcC--CC-ChHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHHHcCChHHHHHHH
Q 010496 130 KFGRMDLATVVFDAMR--VK-SSFTWNAMIDGYMRRGDIESAVRMFDEMPV---RDAISWTALLNGFVKRGYFEEALECF 203 (509)
Q Consensus 130 ~~g~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~ 203 (509)
+.|++++|+..|+++. .| +..+|..+..++.+.|++++|.+.|+.+.. .+...+..+...+...|++++|.+.|
T Consensus 79 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 79 ERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999999886 33 566889999999999999999999987643 25667788889999999999999999
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCC
Q 010496 204 REMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH---KRT 280 (509)
Q Consensus 204 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~ 280 (509)
+++.+.. +.+..+|..+...+...|++++|...|+++++.+ |.+...+..+..++...|++++|...|++.. ..+
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 236 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC
Confidence 9998863 3457888899999999999999999999999886 6678889999999999999999999998775 335
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 010496 281 LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVD 360 (509)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 360 (509)
..++..+..++...|++++|+..|+++.+.. +.+..++..+..++.+.|++++|...++++.+. .+.+..++..+..
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLAN 313 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHH
Confidence 7788999999999999999999999999863 235678888999999999999999999999853 3557888999999
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 010496 361 LYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGK 433 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 433 (509)
.+.+.|++++|.+.++++ ...| +..++..++..+.+.|++++|.+.++++++..|..+.+|..++..+...|+
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 999999999999999887 4555 467889999999999999999999999999999988899999988877664
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.97 E-value=6.8e-27 Score=223.89 Aligned_cols=345 Identities=13% Similarity=0.077 Sum_probs=307.0
Q ss_pred cchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHH
Q 010496 96 QCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV---KSSFTWNAMIDGYMRRGDIESAVRMF 172 (509)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~ 172 (509)
|+++.|...+..+.+.. |++...+..+...+...|++++|...++.... .+..+|..+..+|.+.|++++|.+.|
T Consensus 13 g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 90 (388)
T 1w3b_A 13 GDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHY 90 (388)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 89999999999988874 77789999999999999999999999988763 36789999999999999999999999
Q ss_pred hcCC---CCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc
Q 010496 173 DEMP---VRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDN 249 (509)
Q Consensus 173 ~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 249 (509)
+++. +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.|+++.+.. |.+
T Consensus 91 ~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~ 168 (388)
T 1w3b_A 91 RHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNF 168 (388)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTC
T ss_pred HHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCC
Confidence 9774 3367789999999999999999999999999863 3345567778888999999999999999999886 667
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010496 250 VKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTAC 326 (509)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 326 (509)
..++..+..++...|++++|...|+++.+ .+...|..+...+...|++++|+..|++..... +.+..++..+..++
T Consensus 169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 247 (388)
T 1w3b_A 169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVY 247 (388)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHH
Confidence 88999999999999999999999999863 356789999999999999999999999998863 23578888999999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHH
Q 010496 327 SHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-P-MKPNEVVLGSLLAACRTKGDIILAE 404 (509)
Q Consensus 327 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~ 404 (509)
.+.|++++|...++++.+ ..+.+..+|..+...+.+.|++++|.+.++++ . .+.+..++..+...+...|++++|.
T Consensus 248 ~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 325 (388)
T 1w3b_A 248 YEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp HHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999995 22345778999999999999999999999987 3 3447889999999999999999999
Q ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 405 RLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+.++++++..|.+...+..++.+|.+.|++++|.+.|+++.+.
T Consensus 326 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999899999999999999999999999999874
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.96 E-value=1.5e-28 Score=239.63 Aligned_cols=185 Identities=16% Similarity=0.176 Sum_probs=171.8
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC---------HHHHHHHHHHHHHcCCCCcH
Q 010496 180 AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGT---------LGIGLWIHRYVLKQDFKDNV 250 (509)
Q Consensus 180 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~ 250 (509)
...++.+|.+|++.|++++|+++|++|.+.|+.||..||++||.+|++.+. ++.|.++|++|.+.|+.||.
T Consensus 26 e~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 26 EALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 346788999999999999999999999999999999999999999987654 68899999999999999999
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhcc----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 010496 251 KVCNTLIDLYSRCGCIEFARQVFQRMH----KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTAC 326 (509)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~ 326 (509)
.+|+.+|.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 999999999999999999999999987 4799999999999999999999999999999999999999999999999
Q ss_pred hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc
Q 010496 327 SHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRA 365 (509)
Q Consensus 327 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 365 (509)
++.|+.++|.+++++|. ..+..|+..||+.++..|+..
T Consensus 186 ~~~g~~d~A~~ll~~Mr-~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLR-DLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHTTCHHHHHHHHHHHH-HHTSSBCHHHHHHHHHHHHSH
T ss_pred hhCCCHHHHHHHHHHHH-HhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999 679999999999999988763
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=4.1e-27 Score=229.46 Aligned_cols=200 Identities=11% Similarity=0.101 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHcCCCCCH-hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC---------H
Q 010496 197 EEALECFREMQISGVEPDY-VTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGC---------I 266 (509)
Q Consensus 197 ~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------~ 266 (509)
..+..+.+++.+.+..+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4556677778777766554 45888999999999999999999999999999999999999999997664 7
Q ss_pred HHHHHHHHhcc----CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHh
Q 010496 267 EFARQVFQRMH----KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIM 342 (509)
Q Consensus 267 ~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~ 342 (509)
++|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999997 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 010496 343 KKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM---PMKPNEVVLGSLLAACRTK 397 (509)
Q Consensus 343 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~ 397 (509)
. ..|+.||..+|+.||.+|++.|+.++|.+++++| +..|+..||+.++..|...
T Consensus 167 ~-~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 V-ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp H-HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred H-hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9 6899999999999999999999999999999999 6899999999999988753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.94 E-value=1.2e-24 Score=216.32 Aligned_cols=393 Identities=9% Similarity=-0.025 Sum_probs=317.5
Q ss_pred ccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHH
Q 010496 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTAL 124 (509)
Q Consensus 45 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 124 (509)
+..|......+.+.|++++|+..|+++.+. .|+...|..+..++... |+++.|...+..+.+.+ |++..++..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~--p~~~~~~~~l 79 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALEL--KEDPVFYSNLSACYVSV--GDLKKVVEMSTKALELK--PDYSKVLLRR 79 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHC--SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CccHHHHHhHHHHHHHH--hhHHHHHHHHHHHhccC--hHHHHHHHHH
Confidence 456778889999999999999999999985 47888999999999888 99999999999999985 7779999999
Q ss_pred HHHHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHH-----------------------------
Q 010496 125 LDMYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMF----------------------------- 172 (509)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~----------------------------- 172 (509)
+.+|.+.|++++|...|+++... +......++..+.+......+.+.+
T Consensus 80 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (514)
T 2gw1_A 80 ASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLP 159 (514)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCC
T ss_pred HHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCc
Confidence 99999999999999999988532 3333333333333222222221111
Q ss_pred ---------hcCC---------CC-CHhHHHHHHHHHHH---cCChHHHHHHHHHHHH-----cCCC--------CCHhH
Q 010496 173 ---------DEMP---------VR-DAISWTALLNGFVK---RGYFEEALECFREMQI-----SGVE--------PDYVT 217 (509)
Q Consensus 173 ---------~~~~---------~~-~~~~~~~li~~~~~---~~~~~~A~~~~~~m~~-----~~~~--------p~~~~ 217 (509)
.... .+ +...+......+.. .|++++|..+|+++.+ ..-. .+...
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (514)
T 2gw1_A 160 SVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAIS 239 (514)
T ss_dssp CHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHH
T ss_pred hhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHH
Confidence 1111 01 24555555555554 8999999999999987 3112 23456
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhC
Q 010496 218 IISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVN 294 (509)
Q Consensus 218 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 294 (509)
+..+...+...|++++|..+++++.+.+ +. ..++..+..+|...|++++|.+.++++.+ .+...+..+...+...
T Consensus 240 ~~~~~~~~~~~~~~~~A~~~~~~~l~~~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 317 (514)
T 2gw1_A 240 LEHTGIFKFLKNDPLGAHEDIKKAIELF-PR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFIL 317 (514)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHC-CC-HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC-cc-HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHh
Confidence 7788889999999999999999999886 33 88899999999999999999999998764 3667899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010496 295 GFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNV 374 (509)
Q Consensus 295 ~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 374 (509)
|++++|...++++..... .+...+..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|...
T Consensus 318 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 318 QNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 999999999999998643 35678888889999999999999999999853 234567888999999999999999999
Q ss_pred HHhC-C---CCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 375 VENM-P---MKPN----EVVLGSLLAACRT---KGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 375 ~~~~-~---~~p~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
++++ . ..++ ...+..+...+.. .|++++|...++++++..|.++.++..++.+|.+.|++++|.+.|++
T Consensus 395 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 474 (514)
T 2gw1_A 395 YDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEE 474 (514)
T ss_dssp HHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 9887 2 2222 4488889999999 99999999999999999999988999999999999999999999999
Q ss_pred HHhCC
Q 010496 444 MKGRG 448 (509)
Q Consensus 444 m~~~~ 448 (509)
..+..
T Consensus 475 a~~~~ 479 (514)
T 2gw1_A 475 SADLA 479 (514)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 98764
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=2.7e-23 Score=202.97 Aligned_cols=326 Identities=13% Similarity=0.064 Sum_probs=269.7
Q ss_pred CCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHH
Q 010496 114 DRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV---KSSFTWNAMIDGYMRRGDIESAVRMFDEMPV---RDAISWTALL 187 (509)
Q Consensus 114 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li 187 (509)
.|++...+..++..+.+.|++++|+.+|+++.. .+...|..+..++...|++++|...|+.+.. .+..++..+.
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 101 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 366788889999999999999999999998763 3678888899999999999999999987643 3678889999
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCC-H---hHHHHH------------HHHHHccCCHHHHHHHHHHHHHcCCCCcHh
Q 010496 188 NGFVKRGYFEEALECFREMQISGVEPD-Y---VTIISV------------LNACANVGTLGIGLWIHRYVLKQDFKDNVK 251 (509)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~m~~~~~~p~-~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 251 (509)
.+|.+.|++++|.+.|+++.+. .|+ . ..+..+ ...+...|++++|..+++++.+.. +.+..
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 178 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAE 178 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChH
Confidence 9999999999999999999875 444 3 444444 445889999999999999999876 67888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHH-----
Q 010496 252 VCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPD-GVSFTGA----- 322 (509)
Q Consensus 252 ~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~l----- 322 (509)
++..++.+|.+.|++++|.+.|+++. ..+..+|..++.+|...|++++|+..|+++... .|+ ...+..+
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~~~~~ 256 (450)
T 2y4t_A 179 LRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKK 256 (450)
T ss_dssp HHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHHHHHH
Confidence 99999999999999999999999886 357789999999999999999999999999875 343 3444443
Q ss_pred -------HHHHhccCCHHHHHHHHHHhHHhcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 010496 323 -------LTACSHAGLIEDGLRYFDIMKKIYRVSPR--IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLL 391 (509)
Q Consensus 323 -------i~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 391 (509)
...+.+.|++++|...|+++.+.....+. ...+..+..++.+.|++++|+..++++ ...| +...|..++
T Consensus 257 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~ 336 (450)
T 2y4t_A 257 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRA 336 (450)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 77889999999999999999853222111 457888999999999999999999987 4445 678999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH------------HHHcC-----CchHHHHHHHHH
Q 010496 392 AACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANM------------YAAVG-----KWDGAGKIRRTM 444 (509)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~m 444 (509)
.+|...|++++|...++++++..|.++..+..++.+ |...| +.+++.+.++++
T Consensus 337 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~ 406 (450)
T 2y4t_A 337 EAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL 406 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence 999999999999999999999999998888888844 44444 556777777764
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.93 E-value=4.3e-23 Score=201.53 Aligned_cols=365 Identities=12% Similarity=0.036 Sum_probs=243.2
Q ss_pred CCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHH
Q 010496 42 VNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVG 121 (509)
Q Consensus 42 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (509)
+.++..|..+...+.+.|++++|+.+|+++.+.. +.+...|..+...+... |+.+.|...+..+.+.+ |++..++
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~--p~~~~~~ 97 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAM--GKSKAALPDLTKVIQLK--MDFTAAR 97 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcC--CCcHHHH
Confidence 3467889999999999999999999999998752 34677788888888888 99999999999999885 6678999
Q ss_pred HHHHHHHHhcCCchHHHHHHHhcCCCC---h---HHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCC
Q 010496 122 TALLDMYAKFGRMDLATVVFDAMRVKS---S---FTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGY 195 (509)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 195 (509)
..++.+|.+.|++++|.+.|+++...+ . ..+..++..+.. ..+..+...+...|+
T Consensus 98 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------------~~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 98 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-------------------QRLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-------------------HHHHHHHHHHHHcCC
Confidence 999999999999999999999886532 2 455555444211 112233444555666
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010496 196 FEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQR 275 (509)
Q Consensus 196 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 275 (509)
+++|+.+|+++.+.. +.+...+..+..++...|++++|..+++++.+.. +.+..++..++.+|...|++++|...|++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 666666666665542 3345555556666666666666666666665543 44555666666666666666666666665
Q ss_pred ccC--C-ChhhHHHH------------HHHHHhCCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHhccCCHHHH
Q 010496 276 MHK--R-TLVSWNSI------------IVGFAVNGFVGEALEYFNSMQKEGFKPD-----GVSFTGALTACSHAGLIEDG 335 (509)
Q Consensus 276 ~~~--~-~~~~~~~l------------~~~~~~~~~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~~~~~~a 335 (509)
+.+ | +...+..+ +..+...|++++|...|+++... .|+ ...+..+..++.+.|++++|
T Consensus 237 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A 314 (450)
T 2y4t_A 237 CLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEA 314 (450)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence 542 1 22333333 66777777888888888777764 333 33566677777778888888
Q ss_pred HHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC---
Q 010496 336 LRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EVVLGSLLAA------------CRTKG--- 398 (509)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~g--- 398 (509)
...++++.+. .+.+...|..+..+|...|++++|.+.++++ ...|+ ...+..+..+ |...|
T Consensus 315 ~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~ 392 (450)
T 2y4t_A 315 IRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR 392 (450)
T ss_dssp HHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST
T ss_pred HHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCc
Confidence 8888877742 2335677777777888888888888887776 55554 4455444422 22333
Q ss_pred --CHHHHHHHHHH-HHhcCCCCCc----------hHHHHHHHHHHcCCchH
Q 010496 399 --DIILAERLMKY-LVDLDPGVDS----------NYVLLANMYAAVGKWDG 436 (509)
Q Consensus 399 --~~~~a~~~~~~-~~~~~~~~~~----------~~~~l~~~~~~~g~~~~ 436 (509)
+.+++.+.+++ .++..|+... .+..+..+|...++.++
T Consensus 393 ~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 393 NAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp TCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred cCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 56677888886 6667776221 35566666666665554
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.93 E-value=3.2e-23 Score=207.23 Aligned_cols=392 Identities=10% Similarity=-0.007 Sum_probs=305.2
Q ss_pred CccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHH
Q 010496 44 PTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTA 123 (509)
Q Consensus 44 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 123 (509)
....|..+...+.+.|++++|+..|+++.+.. +.+...|..+..++... |+++.|...+..+.+.+ |++..++..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~--g~~~~A~~~~~~al~~~--p~~~~~~~~ 98 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYIST--GDLEKVIEFTTKALEIK--PDHSKALLR 98 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcC--CchHHHHHH
Confidence 45678889999999999999999999999853 33667788888888888 99999999999999985 777999999
Q ss_pred HHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCC--------------------------
Q 010496 124 LLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPV-------------------------- 177 (509)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------------------------- 177 (509)
+..++...|++++|+..|+.+. .++......+..+...+....|...++.+..
T Consensus 99 la~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 99 RASANESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 9999999999999999997553 2222222223333344444555555544422
Q ss_pred -----------CCHh---HHHHHHHHHH--------HcCChHHHHHHHHHHHHcCCCCC-H-------hHHHHHHHHHHc
Q 010496 178 -----------RDAI---SWTALLNGFV--------KRGYFEEALECFREMQISGVEPD-Y-------VTIISVLNACAN 227 (509)
Q Consensus 178 -----------~~~~---~~~~li~~~~--------~~~~~~~A~~~~~~m~~~~~~p~-~-------~~~~~l~~~~~~ 227 (509)
.+.. ....+...+. ..|++++|..+++++.+. .|+ . .++..+...+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~ 255 (537)
T 3fp2_A 178 LEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFL 255 (537)
T ss_dssp HHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHh
Confidence 2111 2223332222 225789999999999875 343 2 246667778889
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHH
Q 010496 228 VGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYF 304 (509)
Q Consensus 228 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~ 304 (509)
.|++++|...++++.+.. |+..++..+..++...|++++|.+.|+++. ..+..+|..+...+...|++++|+..+
T Consensus 256 ~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 256 KNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 999999999999999875 448889999999999999999999999876 346788999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-C----
Q 010496 305 NSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-P---- 379 (509)
Q Consensus 305 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---- 379 (509)
+++.... +.+...+..+..++...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ .
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 9999863 234677888999999999999999999999853 2445778899999999999999999999886 1
Q ss_pred ---CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 380 ---MKPNEVVLGSLLAACRTK----------GDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 380 ---~~p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.......+..+...+... |++++|...++++++..|.++.++..++.+|.+.|++++|.+.|++..+
T Consensus 411 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp CSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111233455556677777 9999999999999999999999999999999999999999999999987
Q ss_pred CC
Q 010496 447 RG 448 (509)
Q Consensus 447 ~~ 448 (509)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 64
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=7.7e-23 Score=203.26 Aligned_cols=358 Identities=11% Similarity=-0.018 Sum_probs=276.9
Q ss_pred HHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC---CChHHHHHHHHHH
Q 010496 83 FITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV---KSSFTWNAMIDGY 159 (509)
Q Consensus 83 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~ 159 (509)
+......+... |+++.|...+..+.+.+ |+ ..++..+..+|.+.|++++|+..++++.. .+...|..+..+|
T Consensus 9 ~~~~g~~~~~~--g~~~~A~~~~~~al~~~--p~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 9 LKDKGNQFFRN--KKYDDAIKYYNWALELK--ED-PVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHT--SCHHHHHHHHHHHHHHC--CC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHh--ccHHHHHHHHHHHHhcC--cc-HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 44444555566 89999999999999886 65 88999999999999999999999998763 3667888899999
Q ss_pred HhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHH-----------------------------
Q 010496 160 MRRGDIESAVRMFDEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQ----------------------------- 207 (509)
Q Consensus 160 ~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~----------------------------- 207 (509)
.+.|++++|...|+.+... +......++..+........+.+.+..+.
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 9999999999999876422 33333333333333222222222221110
Q ss_pred ------HcCCC--------C-CHhHHHHHHHHHHc---cCCHHHHHHHHHHHHH-----cCC--------CCcHhHHHHH
Q 010496 208 ------ISGVE--------P-DYVTIISVLNACAN---VGTLGIGLWIHRYVLK-----QDF--------KDNVKVCNTL 256 (509)
Q Consensus 208 ------~~~~~--------p-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l 256 (509)
..... | +...+......+.. .|++++|..+++++.+ ... +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 00000 1 13444444444444 8999999999999988 311 3346788899
Q ss_pred HHHHHhcCCHHHHHHHHHhcc--CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 010496 257 IDLYSRCGCIEFARQVFQRMH--KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIED 334 (509)
Q Consensus 257 ~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 334 (509)
..++...|++++|...|+++. .|+...+..+..++...|++++|...++++.... +.+...+..+...+...|++++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 999999999999999999876 2347788889999999999999999999998863 3366788889999999999999
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 335 GLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 335 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
|...++++.+ ..+.+...+..+...|...|++++|...++++ ...| +...+..+...+...|++++|...++++.+
T Consensus 323 A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 323 AGKDFDKAKE--LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHH--TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999985 23346778899999999999999999999887 3334 567889999999999999999999999999
Q ss_pred cCCCCCc------hHHHHHHHHHH---cCCchHHHHHHHHHHhCC
Q 010496 413 LDPGVDS------NYVLLANMYAA---VGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 413 ~~~~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~ 448 (509)
..|.++. .+..++.+|.. .|++++|.+.++++.+..
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 8888755 89999999999 999999999999998753
No 12
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=2.4e-20 Score=175.92 Aligned_cols=302 Identities=14% Similarity=0.059 Sum_probs=174.3
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHhcCCC---CCHhHHHHHHHHHH
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRV---KSSFTWNAMIDGYMRRGDIESAVRMFDEMPV---RDAISWTALLNGFV 191 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 191 (509)
+..+..+...+...|++++|+..|+++.. .+...+..+...+...|++++|...|+.+.. .+...+..+...+.
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence 45566666666666666666666666542 2344555555555555555555555554421 24445555555555
Q ss_pred HcCChHHHHHHHHHHHHcCCCC----CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHH
Q 010496 192 KRGYFEEALECFREMQISGVEP----DYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIE 267 (509)
Q Consensus 192 ~~~~~~~A~~~~~~m~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 267 (509)
..|++++|...|+++.+. .| +...+..+..... ...+..+...+...|+++
T Consensus 83 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADYT 137 (359)
T ss_dssp HHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCHH
T ss_pred HcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCHH
Confidence 555555555555555543 23 1222222210000 000111245555666666
Q ss_pred HHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 010496 268 FARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344 (509)
Q Consensus 268 ~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 344 (509)
+|.+.++++. ..+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 138 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 216 (359)
T 3ieg_A 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLK 216 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6666666554 2244555566666666666666666666666542 23455566666666666666666666666663
Q ss_pred hcCCCCCHHHHH------------HHHHHHHhcCChHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCHHHHHHH
Q 010496 345 IYRVSPRIEHYG------------CIVDLYSRAGRLEDALNVVENM-PMKPN-E----VVLGSLLAACRTKGDIILAERL 406 (509)
Q Consensus 345 ~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~~-~~~p~-~----~~~~~l~~~~~~~g~~~~a~~~ 406 (509)
.. +.+...+. .+...+.+.|++++|...++++ ...|+ . ..+..+...+...|++++|...
T Consensus 217 ~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 294 (359)
T 3ieg_A 217 LD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRI 294 (359)
T ss_dssp HC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 22 11222222 2355677778888888777765 33333 2 2344566777888888888888
Q ss_pred HHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 407 MKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 407 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
++++++..|.++..+..++.+|.+.|++++|.+.|++..+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 295 CSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 88888888877778888888888888888888888887764
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=3.1e-20 Score=175.20 Aligned_cols=323 Identities=10% Similarity=-0.024 Sum_probs=214.1
Q ss_pred cccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC--C-ChHHHHHHH
Q 010496 80 HITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV--K-SSFTWNAMI 156 (509)
Q Consensus 80 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l~ 156 (509)
...+..+...+... |+++.|...+..+.+.. |+++.++..+..++...|++++|...|+++.. | +...+..+.
T Consensus 3 ~~~~~~~~~~~~~~--g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 78 (359)
T 3ieg_A 3 VEKHLELGKKLLAA--GQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 34566667777777 99999999999999975 77799999999999999999999999998863 3 678899999
Q ss_pred HHHHhCCCHHHHHHHHhcCCCCC------HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC
Q 010496 157 DGYMRRGDIESAVRMFDEMPVRD------AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGT 230 (509)
Q Consensus 157 ~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 230 (509)
..+...|++++|...|+.....+ ...+..+...+. ...+..+...+...|+
T Consensus 79 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~ 135 (359)
T 3ieg_A 79 HLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGAD 135 (359)
T ss_dssp HHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccC
Confidence 99999999999999999875433 333433311100 0012222333444444
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 010496 231 LGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSM 307 (509)
Q Consensus 231 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 307 (509)
+++|..+++++.+.. +.+..++..+..++...|++++|...++++.+ .+..++..+...+...|++++|...+++.
T Consensus 136 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 136 YTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444444443 33444444444455555555555555444432 23344445555555555555555555555
Q ss_pred HHCCCCCCHHH------------HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH--HHHHHHHHHHHhcCChHHHHH
Q 010496 308 QKEGFKPDGVS------------FTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRI--EHYGCIVDLYSRAGRLEDALN 373 (509)
Q Consensus 308 ~~~g~~p~~~~------------~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~ 373 (509)
.+... .+... ...+...+.+.|++++|...++++.+.....+.. ..+..+...+...|++++|.+
T Consensus 215 ~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 215 LKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 54311 11121 1223556778888888888888888533221111 235567788888999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 010496 374 VVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAV 431 (509)
Q Consensus 374 ~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 431 (509)
.+++. ...| +..++..+...+...|++++|.+.++++++..|+++..+..+..++...
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 88876 3345 6778888999999999999999999999999999888877777765543
No 14
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.86 E-value=3.8e-19 Score=177.65 Aligned_cols=368 Identities=13% Similarity=0.043 Sum_probs=281.0
Q ss_pred CCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHH
Q 010496 42 VNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVG 121 (509)
Q Consensus 42 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (509)
+.++.+|..+...|.+.|++++|+..|+++.+.+ +.+...+..+...+... |+.+.|...+. .... .|+..
T Consensus 56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~--g~~~~A~~~~~-~~~~--~~~~~--- 126 (537)
T 3fp2_A 56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESL--GNFTDAMFDLS-VLSL--NGDFD--- 126 (537)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH--TCHHHHHHHHH-HHC-----------
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHc--CCHHHHHHHHH-HHhc--CCCCC---
Confidence 3467899999999999999999999999999853 23566777777777777 99999999985 3333 23311
Q ss_pred HHHHHHHHhcCCchHHHHHHHhcCCC----------ChH------------------------------HHHHHHHHHHh
Q 010496 122 TALLDMYAKFGRMDLATVVFDAMRVK----------SSF------------------------------TWNAMIDGYMR 161 (509)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~------------------------------~~~~l~~~~~~ 161 (509)
...+..+...+....|...++.+... +.. ....+...+..
T Consensus 127 ~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 206 (537)
T 3fp2_A 127 GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSA 206 (537)
T ss_dssp -----CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHh
Confidence 22233445555566677777666431 111 12222222222
Q ss_pred --------CCCHHHHHHHHhcCCCC---C-------HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHH
Q 010496 162 --------RGDIESAVRMFDEMPVR---D-------AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLN 223 (509)
Q Consensus 162 --------~~~~~~A~~~~~~~~~~---~-------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 223 (509)
.|++++|..+|+.+... + ..++..+...+...|++++|...|+++.+. .|+...+..+..
T Consensus 207 ~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~ 284 (537)
T 3fp2_A 207 TDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLAL 284 (537)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHH
Confidence 24789999999877543 2 235777778899999999999999999985 566888889999
Q ss_pred HHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHH
Q 010496 224 ACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEA 300 (509)
Q Consensus 224 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 300 (509)
.+...|++++|...++++.+.. +.+..++..+..++...|++++|...|+++.+ .+...|..+...+...|++++|
T Consensus 285 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A 363 (537)
T 3fp2_A 285 TLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTES 363 (537)
T ss_dssp HTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999999886 67788999999999999999999999998863 4677899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC----CHHHHHHHHHHHHhc----------C
Q 010496 301 LEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP----RIEHYGCIVDLYSRA----------G 366 (509)
Q Consensus 301 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~----------g 366 (509)
...++++.+.. +.+...+..+...+...|++++|...++++.+.....+ ....+..+...+.+. |
T Consensus 364 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 442 (537)
T 3fp2_A 364 EAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEE 442 (537)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHH
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHh
Confidence 99999999863 33567888889999999999999999999875332111 223345556677777 9
Q ss_pred ChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 010496 367 RLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYV 422 (509)
Q Consensus 367 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 422 (509)
++++|...++++ ...| +...+..+...+...|++++|.+.++++++..|.++....
T Consensus 443 ~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 443 KFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999987 3444 5778999999999999999999999999999998765533
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.86 E-value=8.3e-20 Score=173.15 Aligned_cols=301 Identities=11% Similarity=0.026 Sum_probs=217.3
Q ss_pred CCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHH-HHhcCCCC-------CHhHHHHHHHHHHHcCChHHHHHHH
Q 010496 132 GRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVR-MFDEMPVR-------DAISWTALLNGFVKRGYFEEALECF 203 (509)
Q Consensus 132 g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~ 203 (509)
+.++.+...++.+...++. .+...|++++|.+ .|+..... +...+..+...+.+.|++++|...|
T Consensus 15 ~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 87 (368)
T 1fch_A 15 DFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLF 87 (368)
T ss_dssp --------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 3344444455544433322 2334577777777 77644321 2455777888888888888888888
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---C
Q 010496 204 REMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---T 280 (509)
Q Consensus 204 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~ 280 (509)
+++.+.. +.+...+..+..++...|++++|...++++++.. +.+..++..++.+|...|++++|.+.|+++.+. +
T Consensus 88 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 165 (368)
T 1fch_A 88 EAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAY 165 (368)
T ss_dssp HHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 8888763 4467778888888888888888888888888876 667788888888888888888888888877532 2
Q ss_pred hhhHHH---------------HHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 010496 281 LVSWNS---------------IIVGFAVNGFVGEALEYFNSMQKEGFKP-DGVSFTGALTACSHAGLIEDGLRYFDIMKK 344 (509)
Q Consensus 281 ~~~~~~---------------l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 344 (509)
...+.. .+..+...|++++|...|+++.+..... +..++..+...+...|++++|...++++.+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 245 (368)
T 1fch_A 166 AHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245 (368)
T ss_dssp GGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 222211 1333348899999999999999863221 478888999999999999999999999985
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----
Q 010496 345 IYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV----- 417 (509)
Q Consensus 345 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----- 417 (509)
. .+.+...+..+...|...|++++|...++++ ...| +...+..+..++...|++++|...++++++..|.+
T Consensus 246 ~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 323 (368)
T 1fch_A 246 V--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG 323 (368)
T ss_dssp H--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred h--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccc
Confidence 3 2346788999999999999999999999987 4444 57799999999999999999999999999988876
Q ss_pred ------CchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 418 ------DSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 418 ------~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
..+|..++.+|...|++++|..++++
T Consensus 324 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 324 EGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp -CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred cccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 67899999999999999999998864
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.86 E-value=3.7e-19 Score=165.83 Aligned_cols=278 Identities=9% Similarity=0.001 Sum_probs=173.9
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC-
Q 010496 154 AMIDGYMRRGDIESAVRMFDEMP---VRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVG- 229 (509)
Q Consensus 154 ~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~- 229 (509)
.+...+...|++++|.++|+.+. +.+...+..++.++...|++++|..+++++.+.. +.+...+..+...+...|
T Consensus 27 ~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 105 (330)
T 3hym_B 27 SLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGH 105 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhh
Confidence 33333444444444444444332 1233444455555666666666666666666542 234555566666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHH
Q 010496 230 TLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNS 306 (509)
Q Consensus 230 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 306 (509)
++++|...++++.+.. +.+...+..+..++...|++++|...|+++.+ .+...+..+...+...|++++|...+++
T Consensus 106 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 106 KNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 6666666666666554 44555666666666666666666666666542 2345566666667777777777777777
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-------CCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-
Q 010496 307 MQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYR-------VSPRIEHYGCIVDLYSRAGRLEDALNVVENM- 378 (509)
Q Consensus 307 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~- 378 (509)
+.+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+...|...|++++|...+++.
T Consensus 185 al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 185 ALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp HHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 76652 33456666677777777777777777777664221 1233556777777777888888888777775
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HHcCCc
Q 010496 379 PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMY-AAVGKW 434 (509)
Q Consensus 379 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 434 (509)
...| +...+..+...+...|++++|.+.++++++..|.++..+..++.++ ...|+.
T Consensus 264 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 264 VLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred hhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 2233 4567777788888888888888888888888888777778887777 344543
No 17
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.85 E-value=8.7e-19 Score=163.26 Aligned_cols=265 Identities=12% Similarity=0.015 Sum_probs=232.1
Q ss_pred CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 010496 178 RDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLI 257 (509)
Q Consensus 178 ~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 257 (509)
.+...+..++..+...|++++|.++|+++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+..++..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 366778888999999999999999999998864 4456677778889999999999999999999986 67788999999
Q ss_pred HHHHhcC-CHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH
Q 010496 258 DLYSRCG-CIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIE 333 (509)
Q Consensus 258 ~~~~~~g-~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 333 (509)
..+...| ++++|.+.|+++.+ .+...|..+...+...|++++|+..++++.+... .+...+..+...+...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHH
Confidence 9999999 99999999999764 3567899999999999999999999999998632 34566777888999999999
Q ss_pred HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CC----------CCCHHHHHHHHHHHHhcCCHHH
Q 010496 334 DGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PM----------KPNEVVLGSLLAACRTKGDIIL 402 (509)
Q Consensus 334 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~g~~~~ 402 (509)
+|...++++.+ ..+.+...+..+...+...|++++|...++++ .. .....++..+...+...|++++
T Consensus 177 ~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 177 LAERFFSQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999984 33446788999999999999999999999876 11 3346789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 403 AERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 403 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
|...++++++..|.+...+..++.+|.+.|++++|.+.+++..+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 999999999999999999999999999999999999999987654
No 18
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=1.3e-17 Score=164.31 Aligned_cols=367 Identities=10% Similarity=-0.019 Sum_probs=292.0
Q ss_pred CCCccchHHHHHHHHc----CCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcC----CCccchhHHHHHHHHHHHhCC
Q 010496 42 VNPTVQWTSSISRHCR----SGRIAEAALEFTRMTLHGTNPNHITFITLLSGCAD----FPSQCLFLGAMIHGLVCKLGL 113 (509)
Q Consensus 42 ~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~~~ 113 (509)
..++.++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. . ++.+.|...+....+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~--~~~~~A~~~~~~a~~~~- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVP--QDYAQAVIWYKKAALKG- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC--CCHHHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHCC-
Confidence 3467788888888888 899999999999998864 44555555555544 4 88999999999988765
Q ss_pred CCCchHHHHHHHHHHHh----cCCchHHHHHHHhcCCC-ChHHHHHHHHHHHh----CCCHHHHHHHHhcCCCC-CHhHH
Q 010496 114 DRNNVMVGTALLDMYAK----FGRMDLATVVFDAMRVK-SSFTWNAMIDGYMR----RGDIESAVRMFDEMPVR-DAISW 183 (509)
Q Consensus 114 ~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~ 183 (509)
++..+..|...|.. .+++++|+..|++.... ++..+..+...|.. .+++++|.+.|+..... +..++
T Consensus 110 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~ 186 (490)
T 2xm6_A 110 ---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSC 186 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 37788889998888 78999999999987654 67778888888887 78999999999876543 78888
Q ss_pred HHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCcHhHHHH
Q 010496 184 TALLNGFVK----RGYFEEALECFREMQISGVEPDYVTIISVLNACAN----VGTLGIGLWIHRYVLKQDFKDNVKVCNT 255 (509)
Q Consensus 184 ~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 255 (509)
..+...|.. .+++++|.++|++..+.| +...+..+...+.. .+++++|..+|++..+.+ +...+..
T Consensus 187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 260 (490)
T 2xm6_A 187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFR 260 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHH
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 889998888 899999999999988865 55677777777765 789999999999988865 4567777
Q ss_pred HHHHHHh----cCCHHHHHHHHHhccCC-ChhhHHHHHHHHHhC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 010496 256 LIDLYSR----CGCIEFARQVFQRMHKR-TLVSWNSIIVGFAVN-----GFVGEALEYFNSMQKEGFKPDGVSFTGALTA 325 (509)
Q Consensus 256 l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~-----~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~ 325 (509)
+..+|.. .+++++|.+.|++..+. +...+..+...|... +++++|+..|++..+.| +...+..+...
T Consensus 261 lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 337 (490)
T 2xm6_A 261 LGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAI 337 (490)
T ss_dssp HHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHH
Confidence 8888887 88999999999988754 667788888888877 89999999999998864 34566667766
Q ss_pred HhccC---CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh--
Q 010496 326 CSHAG---LIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSR----AGRLEDALNVVENMPMKPNEVVLGSLLAACRT-- 396 (509)
Q Consensus 326 ~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~-- 396 (509)
+...| +.++|...|++..+ . .+...+..|...|.. .+++++|.+++++.-...+...+..|...|..
T Consensus 338 y~~~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~ 413 (490)
T 2xm6_A 338 YFRLGSEEEHKKAVEWFRKAAA-K---GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGL 413 (490)
T ss_dssp HHHSCCHHHHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHhCCCcccHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCC
Confidence 76655 78899999999884 2 456778888888888 78999999999887333467788888888887
Q ss_pred --cCCHHHHHHHHHHHHhcCCC---CCchHHHHHHHHHH
Q 010496 397 --KGDIILAERLMKYLVDLDPG---VDSNYVLLANMYAA 430 (509)
Q Consensus 397 --~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 430 (509)
.+++++|...|+++.+.+|. ++.....++.++..
T Consensus 414 g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 414 GVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp SSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 88999999999999998854 55556666655443
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.84 E-value=5.6e-17 Score=159.81 Aligned_cols=362 Identities=12% Similarity=0.029 Sum_probs=299.2
Q ss_pred HHHHHHHhhCCCCCCcccHHHHHHhhcC----CCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh----cCCchH
Q 010496 65 ALEFTRMTLHGTNPNHITFITLLSGCAD----FPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAK----FGRMDL 136 (509)
Q Consensus 65 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~ 136 (509)
+..+....+.| +...+..+-..+.. . ++.+.|...+....+.| ++..+..|...|.. .++.++
T Consensus 27 ~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~--~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 27 LEQLKQKAESG---EAKAQLELGYRYFQGNETT--KDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC--CCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC--cCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 45555555433 44444444444433 4 88999999999998874 47889999999999 899999
Q ss_pred HHHHHHhcCCC-ChHHHHHHHHHHHh----CCCHHHHHHHHhcCCCC-CHhHHHHHHHHHHH----cCChHHHHHHHHHH
Q 010496 137 ATVVFDAMRVK-SSFTWNAMIDGYMR----RGDIESAVRMFDEMPVR-DAISWTALLNGFVK----RGYFEEALECFREM 206 (509)
Q Consensus 137 A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~m 206 (509)
|...|++.... ++..+..+...|.. .+++++|...|+..... ++.++..+...|.. .+++++|+++|++.
T Consensus 98 A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a 177 (490)
T 2xm6_A 98 AVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKA 177 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 99999988754 77788888888888 88999999999977554 78888999999988 88999999999999
Q ss_pred HHcCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhccC
Q 010496 207 QISGVEPDYVTIISVLNACAN----VGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR----CGCIEFARQVFQRMHK 278 (509)
Q Consensus 207 ~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~ 278 (509)
.+.| +...+..+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|...|++..+
T Consensus 178 ~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 178 AEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred HHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 9865 67788888888877 899999999999999876 56778888888887 8899999999999875
Q ss_pred C-ChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-----CCHHHHHHHHHHhHHhcCC
Q 010496 279 R-TLVSWNSIIVGFAV----NGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHA-----GLIEDGLRYFDIMKKIYRV 348 (509)
Q Consensus 279 ~-~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----~~~~~a~~~~~~~~~~~~~ 348 (509)
. +...+..+...|.. .++.++|+..|++..+.| +...+..+...+... +++++|...+++..+ .
T Consensus 252 ~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~-~-- 325 (490)
T 2xm6_A 252 QGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAE-Q-- 325 (490)
T ss_dssp TTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHH-T--
T ss_pred CCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHh-c--
Confidence 4 66778888888888 899999999999998764 455666677777776 899999999999984 2
Q ss_pred CCCHHHHHHHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchH
Q 010496 349 SPRIEHYGCIVDLYSRAG---RLEDALNVVENMPMKPNEVVLGSLLAACRT----KGDIILAERLMKYLVDLDPGVDSNY 421 (509)
Q Consensus 349 ~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 421 (509)
.+...+..+...|...| ++++|++++++.-...+...+..|...|.. .+++++|.+.|+++.+.+ ++..+
T Consensus 326 -~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~ 402 (490)
T 2xm6_A 326 -GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQ 402 (490)
T ss_dssp -TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHH
T ss_pred -CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHH
Confidence 34567788888888766 789999999887333578899999999988 899999999999999865 56789
Q ss_pred HHHHHHHHH----cCCchHHHHHHHHHHhCCCc
Q 010496 422 VLLANMYAA----VGKWDGAGKIRRTMKGRGIQ 450 (509)
Q Consensus 422 ~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 450 (509)
..|+.+|.+ .+++++|...|++..+.+..
T Consensus 403 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 403 VQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 999999998 89999999999999988743
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=7.6e-19 Score=166.39 Aligned_cols=261 Identities=11% Similarity=-0.016 Sum_probs=214.9
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLID 258 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (509)
+...+..+...+.+.|++++|+++|+++.+.. +.+...+..+..++...|++++|...|+++++.. +.+..++..++.
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888899999999999999999998864 4467888899999999999999999999999886 667888999999
Q ss_pred HHHhcCCHHHHHHHHHhccCCC-------------hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 010496 259 LYSRCGCIEFARQVFQRMHKRT-------------LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFK-PDGVSFTGALT 324 (509)
Q Consensus 259 ~~~~~g~~~~a~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~~~~~li~ 324 (509)
+|...|++++|...|+++.+.+ ...+..+...+...|++++|+..|+++...... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999886422 123344578899999999999999999986322 15788999999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 010496 325 ACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIIL 402 (509)
Q Consensus 325 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 402 (509)
.+...|++++|+..++++.+. .+.+..+|..+..+|...|++++|...++++ ...| +..++..+..+|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999853 2446889999999999999999999999987 4455 47799999999999999999
Q ss_pred HHHHHHHHHhcCCC------------CCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 403 AERLMKYLVDLDPG------------VDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 403 a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
|...++++++..|. +...|..++.++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998766 256799999999999999998887754
No 21
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.81 E-value=2.8e-16 Score=156.44 Aligned_cols=392 Identities=9% Similarity=0.022 Sum_probs=291.9
Q ss_pred CCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCC-CcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHH
Q 010496 43 NPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNP-NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVG 121 (509)
Q Consensus 43 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 121 (509)
-++..|..++. +.+.|++++|..+|+++.+. .| +...|...+..+.+. ++.+.|..+++.+++.. |+ ...|
T Consensus 11 ~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~--~~~~~a~~~~~ral~~~--p~-~~lw 82 (530)
T 2ooe_A 11 YDLDAWSILIR-EAQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKA--KNYDKVEKLFQRCLMKV--LH-IDLW 82 (530)
T ss_dssp TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHTTTC--CC-HHHH
T ss_pred CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcC--CC-hHHH
Confidence 36778999998 58899999999999999985 45 556788888888888 99999999999998875 65 7788
Q ss_pred HHHHHHH-HhcCCchHHHH----HHHhcC------CCChHHHHHHHHHHHh---------CCCHHHHHHHHhcCCC-CC-
Q 010496 122 TALLDMY-AKFGRMDLATV----VFDAMR------VKSSFTWNAMIDGYMR---------RGDIESAVRMFDEMPV-RD- 179 (509)
Q Consensus 122 ~~l~~~~-~~~g~~~~A~~----~~~~~~------~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~-~~- 179 (509)
...+... ...|+.+.|.+ +|++.. ..+...|...+....+ .|+++.|..+|++... |.
T Consensus 83 ~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~ 162 (530)
T 2ooe_A 83 KCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMI 162 (530)
T ss_dssp HHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCT
T ss_pred HHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhh
Confidence 8777533 45688887765 666552 1356778887776655 6889999999987654 21
Q ss_pred --HhHHHHHHHHH-------------HHcCChHHHHHHHHHHH------HcC---CCCCH--------hHHHHHHHHHHc
Q 010496 180 --AISWTALLNGF-------------VKRGYFEEALECFREMQ------ISG---VEPDY--------VTIISVLNACAN 227 (509)
Q Consensus 180 --~~~~~~li~~~-------------~~~~~~~~A~~~~~~m~------~~~---~~p~~--------~~~~~l~~~~~~ 227 (509)
...|....... .+.+++..|..++..+. +.. ++|+. ..|...+.....
T Consensus 163 ~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~ 242 (530)
T 2ooe_A 163 NIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKS 242 (530)
T ss_dssp THHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHc
Confidence 12333222211 12345677777776632 111 24431 344444433222
Q ss_pred ----cCCH----HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh-------cCCHH-------HHHHHHHhccC---C-Ch
Q 010496 228 ----VGTL----GIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR-------CGCIE-------FARQVFQRMHK---R-TL 281 (509)
Q Consensus 228 ----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~---~-~~ 281 (509)
.++. +.+..+|++++... |.+..+|..++..+.+ .|+++ +|..+|++..+ | +.
T Consensus 243 ~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~ 321 (530)
T 2ooe_A 243 NPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM 321 (530)
T ss_dssp CSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH
T ss_pred CCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH
Confidence 1232 47788999998875 6788899999988886 68877 89999998874 3 56
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 010496 282 VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPD-G-VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIV 359 (509)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~-~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 359 (509)
..|..++..+.+.|++++|..+|+++++. .|+ . ..|..++..+.+.|++++|..+|++..+. .+.+...|...+
T Consensus 322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a 397 (530)
T 2ooe_A 322 LLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAA 397 (530)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHH
Confidence 78999999999999999999999999985 454 2 47888888888999999999999999942 122333343332
Q ss_pred HH-HHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc----hHHHHHHHHHHcC
Q 010496 360 DL-YSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS----NYVLLANMYAAVG 432 (509)
Q Consensus 360 ~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g 432 (509)
.. +...|++++|..+|++. ...| +...|..++..+.+.|+.++|..+|++++...|.++. .|...+......|
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G 477 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIG 477 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSS
T ss_pred HHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcC
Confidence 22 34689999999999986 4445 5789999999999999999999999999998776655 6888888888999
Q ss_pred CchHHHHHHHHHHhC
Q 010496 433 KWDGAGKIRRTMKGR 447 (509)
Q Consensus 433 ~~~~A~~~~~~m~~~ 447 (509)
+.+.+..+++++.+.
T Consensus 478 ~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 478 DLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999998764
No 22
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=4.4e-18 Score=158.29 Aligned_cols=260 Identities=10% Similarity=-0.024 Sum_probs=203.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 010496 181 ISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLY 260 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (509)
..+..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..+|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 445666777777777788877777777653 3356667777777777788888888887777765 55677777777778
Q ss_pred HhcCCHHHHHHHHHhccCC---ChhhHHHH--------------HH-HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 010496 261 SRCGCIEFARQVFQRMHKR---TLVSWNSI--------------IV-GFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGA 322 (509)
Q Consensus 261 ~~~g~~~~a~~~~~~~~~~---~~~~~~~l--------------~~-~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l 322 (509)
...|++++|.+.++++.+. +...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 8888888888777776532 22233222 22 3677889999999999998863 3367888889
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 010496 323 LTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDI 400 (509)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 400 (509)
...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++ ...| +...+..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999999853 2346788999999999999999999999886 3344 577899999999999999
Q ss_pred HHHHHHHHHHHhcCCC------------CCchHHHHHHHHHHcCCchHHHHHHHHHH
Q 010496 401 ILAERLMKYLVDLDPG------------VDSNYVLLANMYAAVGKWDGAGKIRRTMK 445 (509)
Q Consensus 401 ~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 445 (509)
++|.+.++++++..|. ++..+..++.+|.+.|++++|..++++..
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999999999888 56789999999999999999999987543
No 23
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.80 E-value=7.3e-17 Score=146.88 Aligned_cols=270 Identities=12% Similarity=0.056 Sum_probs=208.5
Q ss_pred HHHHhCCCHHHHHHHHhcCCCCCH----hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHH
Q 010496 157 DGYMRRGDIESAVRMFDEMPVRDA----ISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLG 232 (509)
Q Consensus 157 ~~~~~~~~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 232 (509)
.-....|++..|++.++.....++ .....+.++|...|+++.|+..++. . -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence 334557888888888877655432 3445677888889998888876644 2 3566777888888888889999
Q ss_pred HHHHHHHHHHHcCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC
Q 010496 233 IGLWIHRYVLKQDF-KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEG 311 (509)
Q Consensus 233 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g 311 (509)
+|.+.++++...+. |.+...+..+..++...|++++|++.+++ ..+...+..++..+.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 99999998887763 55677788888999999999999999998 567788999999999999999999999999886
Q ss_pred CCCCHHHH---HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHH
Q 010496 312 FKPDGVSF---TGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVV 386 (509)
Q Consensus 312 ~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~ 386 (509)
.|+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|.+.++++ ...| +..+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 3553211 12334445568999999999999963 4567888999999999999999999999986 4555 6778
Q ss_pred HHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHH
Q 010496 387 LGSLLAACRTKGDIIL-AERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKI 440 (509)
Q Consensus 387 ~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 440 (509)
+..++..+...|+.++ +.++++++++..|+++.+. ....+.+.++++..-
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence 9999999999999875 6789999999999986543 344455555555443
No 24
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.80 E-value=2.1e-19 Score=167.07 Aligned_cols=281 Identities=11% Similarity=0.117 Sum_probs=100.7
Q ss_pred hcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 010496 130 KFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQIS 209 (509)
Q Consensus 130 ~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~ 209 (509)
+.|++++|.+.++++..| .+|..++.++.+.|++++|++.|.+ .+|..+|..++..+...|++++|+.+++..++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik--a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~ 90 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK 90 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 456667777777766443 3666777777777777777777754 345556666777777777777777766555553
Q ss_pred CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHH
Q 010496 210 GVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIV 289 (509)
Q Consensus 210 ~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~ 289 (509)
.+++.+.+.++.+|.+.|+++++.++++ .|+..+|..++..|...|++++|..+|..+ ..|..++.
T Consensus 91 --~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~LA~ 156 (449)
T 1b89_A 91 --ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLAS 156 (449)
T ss_dssp --------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHHHH
T ss_pred --CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHHHH
Confidence 3445566666677777777766666663 355556777777777777777777777766 36667777
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 010496 290 GFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLE 369 (509)
Q Consensus 290 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 369 (509)
++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +...+.....++..|.+.|+++
T Consensus 157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHCCCHH
Confidence 777777777777777766 1566677777777777777777433322 1123333445666677777777
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhcCC-----CCCchHHHHHHHHHHcCCchHHHHH
Q 010496 370 DALNVVENM-PMKP-NEVVLGSLLAACRTK--GDIILAERLMKYLVDLDP-----GVDSNYVLLANMYAAVGKWDGAGKI 440 (509)
Q Consensus 370 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~ 440 (509)
+|..+++.. +..+ ....|+.|...|++. ++..+.++.|..-+...| .+...|..+...|.+.++++.|...
T Consensus 225 Eai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 225 ELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp HHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 777766654 4433 344555555555443 234444444443333333 3455677777777777777766653
No 25
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.79 E-value=9e-18 Score=159.09 Aligned_cols=277 Identities=13% Similarity=0.054 Sum_probs=205.7
Q ss_pred CCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHH-HHHHHHHcCC-CC--CHhHHHHHHHHHHccCCHHHHHHH
Q 010496 162 RGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALE-CFREMQISGV-EP--DYVTIISVLNACANVGTLGIGLWI 237 (509)
Q Consensus 162 ~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~-~~~~m~~~~~-~p--~~~~~~~l~~~~~~~~~~~~a~~~ 237 (509)
.+.++.+...|+.+...++. ++...|++++|++ .+++...... .| +...+..+...+...|++++|...
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~ 86 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRDAE-------AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLL 86 (368)
T ss_dssp ---------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHcCCch-------hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHH
Confidence 34455555555555444332 3445688999998 8887654321 11 345678889999999999999999
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC
Q 010496 238 HRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKP 314 (509)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p 314 (509)
++++++.. +.+..++..+..+|...|++++|.+.|+++. ..+..++..+...+...|++++|...++++......
T Consensus 87 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 164 (368)
T 1fch_A 87 FEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA- 164 (368)
T ss_dssp HHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-
Confidence 99999986 7788899999999999999999999999876 346788999999999999999999999999986422
Q ss_pred CHHHHHH---------------HHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-
Q 010496 315 DGVSFTG---------------ALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM- 378 (509)
Q Consensus 315 ~~~~~~~---------------li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~- 378 (509)
+...+.. .+..+...|++++|...++++.+.....++..++..+...|.+.|++++|...++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 244 (368)
T 1fch_A 165 YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAAL 244 (368)
T ss_dssp TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1222211 233344889999999999999964333235888999999999999999999999987
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 379 PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 379 ~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
...| +...+..++..+...|++++|...++++++..|.++.++..++.+|.+.|++++|...|+++.+.
T Consensus 245 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 314 (368)
T 1fch_A 245 SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM 314 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4444 57799999999999999999999999999999999999999999999999999999999999874
No 26
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.79 E-value=1e-16 Score=157.38 Aligned_cols=326 Identities=10% Similarity=-0.012 Sum_probs=184.4
Q ss_pred CCchHHHHHHHHHHHhcCCchHHHHHHHhcCC-----------CChHHHHHHHHHHHh--CCCHHHHHHHHhcCC---CC
Q 010496 115 RNNVMVGTALLDMYAKFGRMDLATVVFDAMRV-----------KSSFTWNAMIDGYMR--RGDIESAVRMFDEMP---VR 178 (509)
Q Consensus 115 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~---~~ 178 (509)
|....+|..+..+|...|++++|...+++... ....++..+..++.+ .+++++|.+.|++.. +.
T Consensus 91 ~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~ 170 (472)
T 4g1t_A 91 IRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK 170 (472)
T ss_dssp TTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC
Confidence 33345566666666666666666666655421 123444444444433 235666666666543 22
Q ss_pred CHhHHHHHHHH---HHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHH----ccCCHHHHHHHHHHHHHcCCCCcHh
Q 010496 179 DAISWTALLNG---FVKRGYFEEALECFREMQISGVEPDYVTIISVLNACA----NVGTLGIGLWIHRYVLKQDFKDNVK 251 (509)
Q Consensus 179 ~~~~~~~li~~---~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~ 251 (509)
++..+..+..+ +...++.++|++.+++..+.. +.+...+..+...+. ..+++++|.+++++..... +.+..
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~ 248 (472)
T 4g1t_A 171 NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTD 248 (472)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHH
T ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHH
Confidence 44444444433 234455666666666666542 223444444433333 2345566667776666654 55566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHh-------------------CCChHHHHHHHHHHHH
Q 010496 252 VCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAV-------------------NGFVGEALEYFNSMQK 309 (509)
Q Consensus 252 ~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~-------------------~~~~~~A~~~~~~m~~ 309 (509)
++..+...|...|++++|...|+++.+ .+..++..+..+|.. .+.++.|...+++..+
T Consensus 249 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 328 (472)
T 4g1t_A 249 VLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADE 328 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhh
Confidence 666677777777777777777766542 233445444444322 2235678888888777
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH--HHHHHHHH-HHHhcCChHHHHHHHHhC-CCCCCHH
Q 010496 310 EGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRI--EHYGCIVD-LYSRAGRLEDALNVVENM-PMKPNEV 385 (509)
Q Consensus 310 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~li~-~~~~~g~~~~A~~~~~~~-~~~p~~~ 385 (509)
.. +.+..++..+...+...|++++|+..|+++.+ ....+.. ..+..+.. .+...|++++|+..+++. .+.|+..
T Consensus 329 ~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 329 AN-DNLFRVCSILASLHALADQYEEAEYYFQKEFS-KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp HC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred cC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 53 23455677788889999999999999999884 2222221 12333332 234678999999999876 5666644
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCC
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKP 453 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~ 453 (509)
.... ....+.+++++.++.+|.++.+|..++.+|...|++++|++.|++..+.+-..+.
T Consensus 407 ~~~~---------~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~ 465 (472)
T 4g1t_A 407 EKEK---------MKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPS 465 (472)
T ss_dssp HHHH---------HHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------
T ss_pred HHHH---------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc
Confidence 3322 2345667788888999999999999999999999999999999999887644333
No 27
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=1.9e-17 Score=154.11 Aligned_cols=286 Identities=8% Similarity=0.029 Sum_probs=118.0
Q ss_pred cCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchH
Q 010496 57 RSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDL 136 (509)
Q Consensus 57 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 136 (509)
+.|++++|.+.++++. +..+|..+..++... ++++.|.+.|... ++ +..|..++..+...|++++
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~--g~~~eAIdsfika------~D-~~~y~~V~~~ae~~g~~Ee 79 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQK--GMVKEAIDSYIKA------DD-PSSYMEVVQAANTSGNWEE 79 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHc--CCHHHHHHHHHcC------CC-HHHHHHHHHHHHhCCCHHH
Confidence 4567788888887772 224777777777777 7788777777431 33 6677778888888888888
Q ss_pred HHHHHHhcCC--CChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 010496 137 ATVVFDAMRV--KSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPD 214 (509)
Q Consensus 137 A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~ 214 (509)
|++.++...+ +++.+.+.++.+|.+.|+++++.++++. |+..+|+.+...|...|++++|..+|..+
T Consensus 80 Ai~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------- 148 (449)
T 1b89_A 80 LVKYLQMARKKARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT--------
T ss_pred HHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence 8887766653 2456677778888888888887777753 56668888888888888888888888766
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhC
Q 010496 215 YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN 294 (509)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~ 294 (509)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|+..|+++.|......+. ..+.-...++..|.+.
T Consensus 149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~ 220 (449)
T 1b89_A 149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDR 220 (449)
T ss_dssp -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHT
T ss_pred -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHC
Confidence 36777888888888888888888777 257778888888888888888866666544 3444455677778888
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC------CHHHHHHHHHHHHhcCCh
Q 010496 295 GFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP------RIEHYGCIVDLYSRAGRL 368 (509)
Q Consensus 295 ~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~ 368 (509)
|++++|..+++..+... +-....|+-+.-++++- ++++..+.++...+.-+++| +...|..++-.|...+++
T Consensus 221 G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~ 298 (449)
T 1b89_A 221 GYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEY 298 (449)
T ss_dssp TCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCH
T ss_pred CCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchH
Confidence 88888888888777543 33455566555555543 33333333333332223333 345577777778888888
Q ss_pred HHHHHHHHhC
Q 010496 369 EDALNVVENM 378 (509)
Q Consensus 369 ~~A~~~~~~~ 378 (509)
+.|....-+-
T Consensus 299 d~A~~tm~~h 308 (449)
T 1b89_A 299 DNAIITMMNH 308 (449)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhC
Confidence 8777655443
No 28
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.78 E-value=1.9e-15 Score=156.48 Aligned_cols=355 Identities=10% Similarity=0.070 Sum_probs=270.5
Q ss_pred CCCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCC--CCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCc
Q 010496 40 STVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGT--NPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNN 117 (509)
Q Consensus 40 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 117 (509)
...|+.+ ...+++|+..|.+.+|+++|++..-.+- .-+...-+.++....+. +.............
T Consensus 982 ~~~PeeV--s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka---D~~Rv~eyI~kLd~------- 1049 (1630)
T 1xi4_A 982 TQDPEEV--SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA---DRTRVMEYINRLDN------- 1049 (1630)
T ss_pred ccCHHHh--HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh---ChhhHHHHHHHhhh-------
Confidence 3444444 5678999999999999999999984321 01223344455444443 33333333333321
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChH
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFE 197 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 197 (509)
.....+...+...|.+++|..+|++.... ....+.++ -..+++++|.++.++.. ++.+|..+..++.+.|+++
T Consensus 1050 -~d~~eIA~Iai~lglyEEAf~IYkKa~~~-~~A~~VLi---e~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1050 -YDAPDIANIAISNELFEEAFAIFRKFDVN-TSAVQVLI---EHIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred -ccHHHHHHHHHhCCCHHHHHHHHHHcCCH-HHHHHHHH---HHHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHH
Confidence 11344788899999999999999998522 22222232 27789999999999774 5788899999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 010496 198 EALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH 277 (509)
Q Consensus 198 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 277 (509)
+|++.|.+. -|...|..++.++.+.|++++|.++|...++.. ++..+.+.++.+|++.+++++...+. .
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~ 1191 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---N 1191 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---h
Confidence 999999663 467788899999999999999999999888765 34344446999999999998655443 4
Q ss_pred CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHH
Q 010496 278 KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGC 357 (509)
Q Consensus 278 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 357 (509)
.++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++.. +..+|..
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aWke 1255 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTWKE 1255 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHHHH
Confidence 556677888999999999999999999984 478899999999999999999998774 3578888
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc--CCch
Q 010496 358 IVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAV--GKWD 435 (509)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~ 435 (509)
+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+.+++.+...|.-++.+|.+. ++.-
T Consensus 1256 v~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklm 1333 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMR 1333 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHH
Confidence 999999999999999887753 345666778899999999999999999999999988888898888888875 3444
Q ss_pred HHHHHHH
Q 010496 436 GAGKIRR 442 (509)
Q Consensus 436 ~A~~~~~ 442 (509)
++.++|.
T Consensus 1334 Ehlk~f~ 1340 (1630)
T 1xi4_A 1334 EHLELFW 1340 (1630)
T ss_pred HHHHHHH
Confidence 4555544
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=4.8e-17 Score=148.07 Aligned_cols=247 Identities=12% Similarity=0.086 Sum_probs=204.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCH--hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 010496 187 LNGFVKRGYFEEALECFREMQISGVEPDY--VTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG 264 (509)
Q Consensus 187 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 264 (509)
++.....|++..|+..++..... .|+. .....+.++|...|+++.|...++. . -+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence 45667889999999998876543 4543 3556778999999999999986654 2 3678889999999999999
Q ss_pred CHHHHHHHHHhccC----C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010496 265 CIEFARQVFQRMHK----R-TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYF 339 (509)
Q Consensus 265 ~~~~a~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 339 (509)
+.++|++.++++.. | +...+..+...+...|++++|++.+++ +.+...+..++..+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999998742 3 566777888999999999999999987 457788888999999999999999999
Q ss_pred HHhHHhcCCCCCHH---HHHHHHHHHHhcCChHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010496 340 DIMKKIYRVSPRIE---HYGCIVDLYSRAGRLEDALNVVENM--PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLD 414 (509)
Q Consensus 340 ~~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 414 (509)
+++.+. .|+.. ....++..+...|++++|..+|+++ ....+...++.+..++...|++++|...++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999953 24422 1123344555669999999999998 334578899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHcCCchH-HHHHHHHHHhCC
Q 010496 415 PGVDSNYVLLANMYAAVGKWDG-AGKIRRTMKGRG 448 (509)
Q Consensus 415 ~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~~ 448 (509)
|.++.++..++.++...|+.++ +.++++++.+..
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999976 578999887753
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.77 E-value=3.8e-17 Score=154.65 Aligned_cols=231 Identities=13% Similarity=0.053 Sum_probs=197.0
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHH
Q 010496 214 DYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVG 290 (509)
Q Consensus 214 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~ 290 (509)
+...+..+...+.+.|++++|..+|+++++.. +.+..++..+..+|...|++++|...|+++.+ .+..+|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 44568888999999999999999999999986 77899999999999999999999999998863 467899999999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 010496 291 FAVNGFVGEALEYFNSMQKEGFKPDG-----------VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIV 359 (509)
Q Consensus 291 ~~~~~~~~~A~~~~~~m~~~g~~p~~-----------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 359 (509)
|...|++++|+..|+++.+. .|+. ..+..+...+...|++++|...++++.+......+..++..+.
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG 220 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence 99999999999999999885 3332 2233457788999999999999999996443323688999999
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHH
Q 010496 360 DLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGA 437 (509)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 437 (509)
..|...|++++|.+.++++ ...| +..+|..+..++...|++++|...++++++..|.++.++..++.+|.+.|++++|
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999987 3444 6789999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhC
Q 010496 438 GKIRRTMKGR 447 (509)
Q Consensus 438 ~~~~~~m~~~ 447 (509)
...|+++.+.
T Consensus 301 ~~~~~~al~~ 310 (365)
T 4eqf_A 301 VSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999874
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.76 E-value=2.8e-15 Score=149.18 Aligned_cols=371 Identities=8% Similarity=-0.011 Sum_probs=268.8
Q ss_pred HHHHhhCCCCC-CcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCC
Q 010496 68 FTRMTLHGTNP-NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRV 146 (509)
Q Consensus 68 ~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 146 (509)
|++.++. .| +...|..++.. ... ++.+.|..+++.+.+. .|.+...|..++..+.+.|++++|..+|+++..
T Consensus 2 le~al~~--~P~~~~~w~~l~~~-~~~--~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~ 74 (530)
T 2ooe_A 2 AEKKLEE--NPYDLDAWSILIRE-AQN--QPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLM 74 (530)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHH-HHS--SCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred hhhHhhh--CCCCHHHHHHHHHH-HHh--CCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 3444443 34 56678888874 555 8999999999999887 488899999999999999999999999999875
Q ss_pred --CChHHHHHHHHHH-HhCCCHHHHHH----HHhcCC------CCCHhHHHHHHHHHHH---------cCChHHHHHHHH
Q 010496 147 --KSSFTWNAMIDGY-MRRGDIESAVR----MFDEMP------VRDAISWTALLNGFVK---------RGYFEEALECFR 204 (509)
Q Consensus 147 --~~~~~~~~l~~~~-~~~~~~~~A~~----~~~~~~------~~~~~~~~~li~~~~~---------~~~~~~A~~~~~ 204 (509)
|+...|..++... ...|+++.|.+ +|+... ..+...|...+..... .|+++.|..+|+
T Consensus 75 ~~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~ 154 (530)
T 2ooe_A 75 KVLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQ 154 (530)
T ss_dssp TCCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHH
Confidence 5666777666533 35677766654 565431 2356778777776655 688999999999
Q ss_pred HHHHcCCCCCHhHHHHHHHHH-------------HccCCHHHHHHHHHHHH------HcC---CCCc--------HhHHH
Q 010496 205 EMQISGVEPDYVTIISVLNAC-------------ANVGTLGIGLWIHRYVL------KQD---FKDN--------VKVCN 254 (509)
Q Consensus 205 ~m~~~~~~p~~~~~~~l~~~~-------------~~~~~~~~a~~~~~~~~------~~~---~~~~--------~~~~~ 254 (509)
+..+....+....|....... ...+++..|..++.... +.. ++|+ ...|.
T Consensus 155 ~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~ 234 (530)
T 2ooe_A 155 RGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWK 234 (530)
T ss_dssp HHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHH
T ss_pred HHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHH
Confidence 998731111123333222211 13456777777776532 211 2443 24555
Q ss_pred HHHHHHHhc----CCH----HHHHHHHHhccC---CChhhHHHHHHHHHh-------CCChH-------HHHHHHHHHHH
Q 010496 255 TLIDLYSRC----GCI----EFARQVFQRMHK---RTLVSWNSIIVGFAV-------NGFVG-------EALEYFNSMQK 309 (509)
Q Consensus 255 ~l~~~~~~~----g~~----~~a~~~~~~~~~---~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~m~~ 309 (509)
..+...... ++. .++..+|+++.. .+...|..++..+.+ .|+++ +|..+|++.++
T Consensus 235 ~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~ 314 (530)
T 2ooe_A 235 KYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS 314 (530)
T ss_dssp HHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH
Confidence 555433322 222 467778887763 467788888888875 78887 89999999986
Q ss_pred CCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-H-HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-HH
Q 010496 310 EGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR-I-EHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-EV 385 (509)
Q Consensus 310 ~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-~~ 385 (509)
.-.+-+...+..++..+.+.|++++|..+|+++.+ ..|+ . ..|..++..+.+.|++++|.++|++. ...|. ..
T Consensus 315 ~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~ 391 (530)
T 2ooe_A 315 TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH 391 (530)
T ss_dssp TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTH
T ss_pred HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchH
Confidence 32233577888888889999999999999999994 3453 3 57889999999999999999999987 44443 33
Q ss_pred HHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 386 VLGSLLAA-CRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 386 ~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
.|...+.. +...|+.++|..+|+++++..|+++..|..++..+.+.|+.++|..+|++....+
T Consensus 392 ~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~ 455 (530)
T 2ooe_A 392 VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 455 (530)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence 33333322 3468999999999999999999999999999999999999999999999998874
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.75 E-value=6.9e-17 Score=150.13 Aligned_cols=268 Identities=12% Similarity=0.013 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHH
Q 010496 119 MVGTALLDMYAKFGRMDLATVVFDAMRV---KSSFTWNAMIDGYMRRGDIESAVRMFDEMP---VRDAISWTALLNGFVK 192 (509)
Q Consensus 119 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~ 192 (509)
..+..+...+...|++++|..+|+++.. .+...+..+...+.+.|++++|...|+.+. +.+..++..+...+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 101 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHH
Confidence 3445566666667777777776666542 244455555555555555555555555442 2244455555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHH-HH-HHHhcCCHHHHH
Q 010496 193 RGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTL-ID-LYSRCGCIEFAR 270 (509)
Q Consensus 193 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~g~~~~a~ 270 (509)
.|++++|.+.++++.... +.+...+..+...+ ++......+ .. .+...|++++|.
T Consensus 102 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~A~ 158 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRECR 158 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS-TTTTTC------------------------------------------CCTTSHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHHHH
Confidence 555555555555555432 11112222110000 000000000 11 244444555555
Q ss_pred HHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 010496 271 QVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYR 347 (509)
Q Consensus 271 ~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 347 (509)
+.++++. ..+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++++.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-- 235 (327)
T 3cv0_A 159 TLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI-- 235 (327)
T ss_dssp HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Confidence 5555443 1234455555555555555555555555555442 223455555555666666666666666665532
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 348 VSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-------------EVVLGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 348 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
.+.+...+..+...|.+.|++++|.+.++++ ...|+ ...+..+..++...|++++|..+++++++
T Consensus 236 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 236 NPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 1224555556666666666666666666554 22222 44666666667777777777666665444
No 33
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.75 E-value=1.2e-15 Score=149.75 Aligned_cols=369 Identities=9% Similarity=-0.082 Sum_probs=244.6
Q ss_pred CCCCccchHHHHHHHHcCCChhHHHHHHHHHhhC-----C--CCC-CcccHHHHHHhhcCCCccchhHHHHHHHHHHHhC
Q 010496 41 TVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLH-----G--TNP-NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLG 112 (509)
Q Consensus 41 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 112 (509)
....+..||.|...+...|++++|++.|++..+. + ..| ...+|..+...+... |+.+.|...++++.+..
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~--g~~~~A~~~~~ka~~i~ 124 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM--GRLSDVQIYVDKVKHVC 124 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHh
Confidence 3344677999999999999999999999987541 1 123 345688888888888 99999999998887652
Q ss_pred ------CCCCchHHHHHHHHHHHhc--CCchHHHHHHHhcCC--C-ChHHHHHHHHH---HHhCCCHHHHHHHHhcCC--
Q 010496 113 ------LDRNNVMVGTALLDMYAKF--GRMDLATVVFDAMRV--K-SSFTWNAMIDG---YMRRGDIESAVRMFDEMP-- 176 (509)
Q Consensus 113 ------~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~--~-~~~~~~~l~~~---~~~~~~~~~A~~~~~~~~-- 176 (509)
..+..+.++..+..++... +++++|+..|++... | ++..+..+..+ +...++.++|++.|+...
T Consensus 125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1233467777777666665 468999999998863 3 55556555544 445677788888877543
Q ss_pred -CCCHhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHh
Q 010496 177 -VRDAISWTALLNGFVK----RGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVK 251 (509)
Q Consensus 177 -~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 251 (509)
+.+..++..+...+.. .|++++|.+++++..... +.+...+..+...+...|++++|...++++.+.. |.+..
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 282 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY 282 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence 3466777766655554 467889999999988864 4567788899999999999999999999999886 66778
Q ss_pred HHHHHHHHHHhc-------------------CCHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010496 252 VCNTLIDLYSRC-------------------GCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQK 309 (509)
Q Consensus 252 ~~~~l~~~~~~~-------------------g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 309 (509)
++..+..+|... +.++.|...|++.. ..+..++..+...+...|++++|+..|++.++
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~ 362 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFS 362 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence 888887776543 23566777777654 34567899999999999999999999999998
Q ss_pred CCCCCCHH--HHHHHHH-HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CH
Q 010496 310 EGFKPDGV--SFTGALT-ACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NE 384 (509)
Q Consensus 310 ~g~~p~~~--~~~~li~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~ 384 (509)
....+... .+..+.. .....|+.++|+..|++..+ +.|+.......+ ..+.++++.. ...| +.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~ 430 (472)
T 4g1t_A 363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKMK---------DKLQKIAKMRLSKNGADS 430 (472)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CT
T ss_pred cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCH
Confidence 64443322 2222222 23577999999999999884 344432222222 2233333332 2334 56
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLA 425 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 425 (509)
.+|..+..++...|++++|++.|+++++.+|.+|.+..-++
T Consensus 431 ~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 431 EALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp THHHHHHHHHHHHHHCC------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 78999999999999999999999999999998877665544
No 34
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.74 E-value=1.2e-14 Score=150.69 Aligned_cols=347 Identities=12% Similarity=0.065 Sum_probs=236.9
Q ss_pred HHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHh
Q 010496 51 SISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAK 130 (509)
Q Consensus 51 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 130 (509)
+...+...|.+++|..+|++... .....+.++..+ +++++|.++.... +++.+|..+..++..
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie~i-----~nldrAiE~Aerv-------n~p~vWsqLAKAql~ 1117 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIEHI-----GNLDRAYEFAERC-------NEPAVWSQLAKAQLQ 1117 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHHHH-----hhHHHHHHHHHhc-------CCHHHHHHHHHHHHh
Confidence 45666677778888888877521 122233344322 6667776666533 337778888888888
Q ss_pred cCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCC--CCHhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 010496 131 FGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPV--RDAISWTALLNGFVKRGYFEEALECFREMQI 208 (509)
Q Consensus 131 ~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~ 208 (509)
.|++++|+..|.+. .|...|..++..+.+.|++++|.+.|....+ +++...+.++.+|++.+++++...+ .+
T Consensus 1118 ~G~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~f----I~ 1191 (1630)
T 1xi4_A 1118 KGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEF----IN 1191 (1630)
T ss_pred CCCHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHH----Hh
Confidence 88888888888664 5666777788888888888888888865432 2333344577788888777753333 22
Q ss_pred cCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHH
Q 010496 209 SGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSII 288 (509)
Q Consensus 209 ~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~ 288 (509)
.++...|..+...|...|++++|..+|..+ ..|..++.+|++.|++++|.+.+++. .+..+|..+.
T Consensus 1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA--~n~~aWkev~ 1257 (1630)
T 1xi4_A 1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA--NSTRTWKEVC 1257 (1630)
T ss_pred ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh--CCHHHHHHHH
Confidence 345566667778888888888888888774 36788888888888888888888877 4567788888
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhc--
Q 010496 289 VGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRA-- 365 (509)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~-- 365 (509)
.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++... ++.+ ....|+.|...|++-
T Consensus 1258 ~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL---~LeraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1258 FACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAAL---GLERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh---ccChhHhHHHHHHHHHHHhCCH
Confidence 8888888888777766542 3355666788888889999999999998877 3333 455666666666654
Q ss_pred CChHHHHHHHHh-CCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh------------cCCCCCchHHHHHH
Q 010496 366 GRLEDALNVVEN-MPMKP------NEVVLGSLLAACRTKGDIILAERLMKYLVD------------LDPGVDSNYVLLAN 426 (509)
Q Consensus 366 g~~~~A~~~~~~-~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------~~~~~~~~~~~l~~ 426 (509)
++..++.++|.. +.+.| +...|..++..|.+.|+++.|...+-.-.. ..+.++..|...+.
T Consensus 1330 eklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~ 1409 (1630)
T 1xi4_A 1330 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQ 1409 (1630)
T ss_pred HHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHH
Confidence 455555555543 33333 566888888999999999988843222211 13456777888888
Q ss_pred HHHHcC---------------CchHHHHHHH
Q 010496 427 MYAAVG---------------KWDGAGKIRR 442 (509)
Q Consensus 427 ~~~~~g---------------~~~~A~~~~~ 442 (509)
.|...+ +.+++.++|+
T Consensus 1410 Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1410 FYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred HHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 887776 6667766665
No 35
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=1.2e-15 Score=136.38 Aligned_cols=222 Identities=15% Similarity=0.071 Sum_probs=116.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCc----HhHHH
Q 010496 181 ISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDF--KDN----VKVCN 254 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~ 254 (509)
..+..+...+...|++++|+.+|+++.+.. .+...+..+..++...|++++|...++++.+... .++ ..++.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 345556666666666666666666666554 4555555666666666666666666665554320 001 34444
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 010496 255 TLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIED 334 (509)
Q Consensus 255 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 334 (509)
.+..+|...|++++|...| +++... .|+. ..+...|++++
T Consensus 84 ~l~~~~~~~~~~~~A~~~~-------------------------------~~a~~~--~~~~-------~~~~~~~~~~~ 123 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYY-------------------------------QKSLTE--HRTA-------DILTKLRNAEK 123 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHH-------------------------------HHHHHH--CCCH-------HHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHH-------------------------------HHHHhc--Cchh-------HHHHHHhHHHH
Confidence 4444444555554444444 444442 2221 12333344555
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 335 GLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 335 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
|...++++.+ ..+.+...+..+...+...|++++|...++++ ...| +...+..+...+...|++++|...++++++
T Consensus 124 a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 124 ELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5555555542 11123344555555555555555555555554 2222 344555555556666666666666666666
Q ss_pred cCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 413 LDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 413 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
..|.++..+..++.+|.+.|++++|.+.+++..+
T Consensus 202 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 202 KDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 6665555566666666666666666666655544
No 36
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=2.4e-15 Score=134.49 Aligned_cols=187 Identities=14% Similarity=0.090 Sum_probs=139.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC--CCC----HHHHHHHH
Q 010496 252 VCNTLIDLYSRCGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGF--KPD----GVSFTGAL 323 (509)
Q Consensus 252 ~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~--~p~----~~~~~~li 323 (509)
.+..+...+...|++++|..+|+++.+ .+...|..+..++...|++++|+..++++.+... .++ ...+..+.
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~ 86 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIG 86 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHH
Confidence 344455555555555555555544321 3444555555566666666666666666555311 112 47788889
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 010496 324 TACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDII 401 (509)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~ 401 (509)
.++...|++++|...++++.+. .|+. ..+.+.|++++|...++++ ...| +...+..+...+...|+++
T Consensus 87 ~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 87 NAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 9999999999999999999943 3443 4566778899999999887 3455 4558888999999999999
Q ss_pred HHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 402 LAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 402 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
+|...++++++..|.++..+..++.+|.+.|++++|.+.+++..+..
T Consensus 157 ~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999998754
No 37
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=3.5e-15 Score=129.67 Aligned_cols=195 Identities=14% Similarity=0.015 Sum_probs=139.4
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010496 247 KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGAL 323 (509)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 323 (509)
|++...+..+...+.+.|++++|...|++..+ .+...+..+..++.+.|++++|+..|++.++.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45556666667777777777777777776543 245566667777777777777777777777652 22455666677
Q ss_pred HHHhcc-----------CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHH
Q 010496 324 TACSHA-----------GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEVVLGSLL 391 (509)
Q Consensus 324 ~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~ 391 (509)
.++... |++++|+..+++..+. .+-+...+..+...|...|++++|+..|++. ....+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 777777 9999999999998842 2335778888899999999999999999886 2226788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010496 392 AACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTM 444 (509)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 444 (509)
.++...|++++|...++++++..|.++..+..++.++.+.|++++|++.+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998764
No 38
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.67 E-value=5.7e-15 Score=133.49 Aligned_cols=241 Identities=11% Similarity=-0.063 Sum_probs=184.2
Q ss_pred HcCChHHHHHHHHHHHHcCCC--C-CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHH
Q 010496 192 KRGYFEEALECFREMQISGVE--P-DYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEF 268 (509)
Q Consensus 192 ~~~~~~~A~~~~~~m~~~~~~--p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 268 (509)
..|++++|++.|+++.+.... | +...+..+..++...|++++|...++++++.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346788888888888875311 1 35567778888888889999998888888876 6678888888889999999999
Q ss_pred HHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHh
Q 010496 269 ARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKI 345 (509)
Q Consensus 269 a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~ 345 (509)
|.+.|+++.+ .+..++..+..++...|++++|...|+++.+. .|+.......+..+...|++++|...+++....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9998888763 36778888889999999999999999998885 444444444555567779999999999888753
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010496 346 YRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN-----EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 346 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 419 (509)
.+++...+ .++..+...++.++|.+.+++. ...|+ ...+..+...+...|++++|...++++++..|.+..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 23344444 3677778888889999998876 33332 468888999999999999999999999999887644
Q ss_pred hHHHHHHHHHHcCCchHHHHHH
Q 010496 420 NYVLLANMYAAVGKWDGAGKIR 441 (509)
Q Consensus 420 ~~~~l~~~~~~~g~~~~A~~~~ 441 (509)
..+.++...|++++|++.+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 3466788889999988776
No 39
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.67 E-value=9.1e-15 Score=131.99 Aligned_cols=246 Identities=12% Similarity=-0.026 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc--HhHHHHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDN--VKVCNTLIDL 259 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~ 259 (509)
.+......+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++++.+....++ ...|..+..+
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 33445556666666666666666666542 22344566666666666666666666666666321111 2235666666
Q ss_pred HHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHH
Q 010496 260 YSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGL 336 (509)
Q Consensus 260 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~ 336 (509)
+...|++++|.+.|+++.+ .+..+|..+...+...|++++|+..|++..+. .+.+...+..+...+...+++++|.
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~~~~~~~~~A~ 162 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP-TTTDPKVFYELGQAYYYNKEYVKAD 162 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS-SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc-CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 6666777777666666542 34456666666677777777777777666654 2223445555552333345777777
Q ss_pred HHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC---hHHHHHHHHhC----CCCCC------HHHHHHHHHHHHhcCCHHHH
Q 010496 337 RYFDIMKKIYRVSPRIEHYGCIVDLYSRAGR---LEDALNVVENM----PMKPN------EVVLGSLLAACRTKGDIILA 403 (509)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~----~~~p~------~~~~~~l~~~~~~~g~~~~a 403 (509)
..++++.+.. +.+...+..+...+...|+ +++|...++++ ...|+ ...|..+...|...|++++|
T Consensus 163 ~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 163 SSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 7777776421 2335566666666666666 55566665554 11233 24677788888999999999
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 010496 404 ERLMKYLVDLDPGVDSNYVLLANMYAAV 431 (509)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 431 (509)
.+.++++++.+|+++.++..+.......
T Consensus 241 ~~~~~~al~~~p~~~~a~~~l~~~~~~~ 268 (272)
T 3u4t_A 241 DAAWKNILALDPTNKKAIDGLKMKLEHH 268 (272)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHC------
T ss_pred HHHHHHHHhcCccHHHHHHHhhhhhccc
Confidence 9999999999999887777766655444
No 40
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.66 E-value=1.9e-14 Score=135.43 Aligned_cols=248 Identities=11% Similarity=0.076 Sum_probs=191.2
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGT-LGIGLWIHRYVLKQDFKDNVKVCNTLI 257 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 257 (509)
+..+|+.+...+.+.|++++|++.+++++... +-+...|..+..++...|+ +++|+..++++++.. +.+..+|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 45567777777888888888888888888753 3356677777888888886 888888888888876 66778888888
Q ss_pred HHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-cCCHH
Q 010496 258 DLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSH-AGLIE 333 (509)
Q Consensus 258 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-~~~~~ 333 (509)
.++...|++++|+..|+++.+ .+..+|..+..++...|++++|+..|+++++... -+...|+.+..++.. .|..+
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcch
Confidence 888888888888888888763 4667888888888888888999999998888633 256778888888877 55546
Q ss_pred HH-----HHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC--ChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC-------
Q 010496 334 DG-----LRYFDIMKKIYRVSPRIEHYGCIVDLYSRAG--RLEDALNVVENMPMKP-NEVVLGSLLAACRTKG------- 398 (509)
Q Consensus 334 ~a-----~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~g------- 398 (509)
+| +..++++.+. .+-+...|..+...+...| ++++|++.+.++...| +...+..++..|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence 66 4778887742 2335778888888888887 6889998888875555 4668888888888764
Q ss_pred --CHHHHHHHHHHH-HhcCCCCCchHHHHHHHHHHc
Q 010496 399 --DIILAERLMKYL-VDLDPGVDSNYVLLANMYAAV 431 (509)
Q Consensus 399 --~~~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~~ 431 (509)
..++|.++++++ .+.+|.....|..++..+...
T Consensus 331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 258999999999 899998888888887766543
No 41
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.66 E-value=3.8e-15 Score=144.54 Aligned_cols=376 Identities=9% Similarity=0.007 Sum_probs=252.9
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccch---hHHHHHHHHHHHhCCCCCchHHHHHHHH
Q 010496 50 SSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCL---FLGAMIHGLVCKLGLDRNNVMVGTALLD 126 (509)
Q Consensus 50 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 126 (509)
.+...+.+.|++++|+.+|++..+.| .++ .+..+-..+... |+. +.|...+....+. ++..+..|..
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g-~~~--A~~~Lg~~y~~~--g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~ 77 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG-YSE--AQVGLADIQVGT--RDPAQIKQAEATYRAAADT-----SPRAQARLGR 77 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-CCT--GGGTCC-----------------------------------CHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC-CHH--HHHHHHHHHHcc--CCCCCHHHHHHHHHHHHhC-----CHHHHHHHHH
Confidence 36777888999999999999998876 233 333333333333 555 8888888888755 2667777887
Q ss_pred HHHhcC-----CchHHHHHHHhcCCC-ChHHHHHHHHHHHhCCCHHH---HHHHHhcCCC-CCHhHHHHHHHHHHHcCCh
Q 010496 127 MYAKFG-----RMDLATVVFDAMRVK-SSFTWNAMIDGYMRRGDIES---AVRMFDEMPV-RDAISWTALLNGFVKRGYF 196 (509)
Q Consensus 127 ~~~~~g-----~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~-~~~~~~~~li~~~~~~~~~ 196 (509)
++...| +.++|+..|++...+ +...+..|...|...+..++ +.+.+..... .++..+..+...|...+.+
T Consensus 78 ~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 78 LLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp HHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCG
T ss_pred HHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCc
Confidence 666655 778999999988754 55577788888877665443 3334433322 2677888888999888866
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc----CCHHHH
Q 010496 197 EEALECFREMQISGVEPDYVTIISVLNACANVG---TLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRC----GCIEFA 269 (509)
Q Consensus 197 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a 269 (509)
+++......+.+.-...+...+..+...|...| +.++|.+.|++..+.| +++...+..|..+|... +++++|
T Consensus 158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A 236 (452)
T 3e4b_A 158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTA 236 (452)
T ss_dssp GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence 655555444333222333447788888888899 8999999999999998 67777767788888665 799999
Q ss_pred HHHHHhccCCChhhHHHHHHH-H--HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-----CHHHHHHHHHH
Q 010496 270 RQVFQRMHKRTLVSWNSIIVG-F--AVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAG-----LIEDGLRYFDI 341 (509)
Q Consensus 270 ~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~-----~~~~a~~~~~~ 341 (509)
.+.|++....++..+..+... + ...+++++|+..|++..+.| +...+..|...|. .| ++++|...|++
T Consensus 237 ~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 237 QALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp HHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 999999884467788888877 4 46889999999999999876 5666666776666 45 89999999988
Q ss_pred hHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhc
Q 010496 342 MKKIYRVSPRIEHYGCIVDLYSR----AGRLEDALNVVENMPMKPNEVVLGSLLAACRT----KGDIILAERLMKYLVDL 413 (509)
Q Consensus 342 ~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~ 413 (509)
.. .-+...+..|...|.. ..++++|..+|++.-...+......|...|.. ..+.++|...|+++.+.
T Consensus 313 Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~ 387 (452)
T 3e4b_A 313 AV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQ 387 (452)
T ss_dssp TT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTT
T ss_pred Hh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHC
Confidence 76 3456777788877776 34899999999887333345566666666653 45899999999999987
Q ss_pred CCCCCchHHHHHHHH--HHcCCchHHHHHHHHHHhC
Q 010496 414 DPGVDSNYVLLANMY--AAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 414 ~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~m~~~ 447 (509)
+... ....+.... ...++..+|.++.++-++.
T Consensus 388 g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 388 DTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp CCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence 7643 333333332 3334677788887766553
No 42
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.65 E-value=1.6e-16 Score=159.61 Aligned_cols=143 Identities=12% Similarity=0.133 Sum_probs=119.9
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhcCC-------CCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHH
Q 010496 149 SFTWNAMIDGYMRRGDIESAVRMFDEMP-------VRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISV 221 (509)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l 221 (509)
..+|+++|++|++.|++++|.++|.+|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 4589999999999999999999997653 579999999999999999999999999999999999999999999
Q ss_pred HHHHHccCCH-HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---C------ChhhHHHHHHHH
Q 010496 222 LNACANVGTL-GIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---R------TLVSWNSIIVGF 291 (509)
Q Consensus 222 ~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~------~~~~~~~l~~~~ 291 (509)
|.++++.|+. +.|.++|++|.+.|+.||..+|+.++..+.+. .+++..+++.. + ...+...|.+.|
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 9999999985 78999999999999999999999998777664 44444454431 1 133444555566
Q ss_pred HhCC
Q 010496 292 AVNG 295 (509)
Q Consensus 292 ~~~~ 295 (509)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 6544
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.65 E-value=2.5e-14 Score=124.26 Aligned_cols=194 Identities=12% Similarity=0.041 Sum_probs=126.7
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLID 258 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (509)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...++++++.. |.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 45566777777777888888888887777643 3356667777777777788888888887777775 566777777777
Q ss_pred HHHhc-----------CCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010496 259 LYSRC-----------GCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALT 324 (509)
Q Consensus 259 ~~~~~-----------g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 324 (509)
++... |++++|+..|++..+ .+...|..+..++...|++++|+..|++.++.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 77777 777777777776652 245566677777777777777777777777765 56666777777
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC
Q 010496 325 ACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM 378 (509)
Q Consensus 325 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 378 (509)
++...|++++|+..|+++.+. .+.+...+..+...+.+.|++++|.+.+++.
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777777777777777642 2234566667777777777777777766654
No 44
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=3.2e-16 Score=157.45 Aligned_cols=116 Identities=16% Similarity=0.190 Sum_probs=86.3
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhcc-------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010496 249 NVKVCNTLIDLYSRCGCIEFARQVFQRMH-------KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTG 321 (509)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 321 (509)
-..+|++||++||+.|++++|.++|++|. .||+++||+||.+|++.|++++|.++|++|.+.|+.||..||+.
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 34567777777777777777777775543 46777777777777777777888888888888888888888888
Q ss_pred HHHHHhccCC-HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc
Q 010496 322 ALTACSHAGL-IEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRA 365 (509)
Q Consensus 322 li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 365 (509)
+|.++++.|+ .++|.++|++|. ..|+.||..+|++++..+.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~-~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMS-QEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHH-HHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHH-HcCCCCChhhcccccChhhHH
Confidence 8888887776 467778888887 567888888887777665554
No 45
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.63 E-value=2.4e-13 Score=122.78 Aligned_cols=224 Identities=12% Similarity=-0.023 Sum_probs=124.6
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCcHhHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACAN----VGTLGIGLWIHRYVLKQDFKDNVKVCN 254 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 254 (509)
++.++..+...+...|++++|++.|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4455555666666666666666666666552 233445555555555 556666666666555543 344455
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--
Q 010496 255 TLIDLYSR----CGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSH-- 328 (509)
Q Consensus 255 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~-- 328 (509)
.+..+|.. .+++++|... |++..+.+ +...+..+...|..
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~-------------------------------~~~a~~~~---~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQY-------------------------------YSKACDLK---YAEGCASLGGIYHDGK 124 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHH-------------------------------HHHHHHTT---CHHHHHHHHHHHHHCS
T ss_pred HHHHHHhCCCCcccCHHHHHHH-------------------------------HHHHHHcC---CccHHHHHHHHHHcCC
Confidence 55555555 4555555444 44444432 33444444444544
Q ss_pred --cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cC
Q 010496 329 --AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSR----AGRLEDALNVVENMPMKPNEVVLGSLLAACRT----KG 398 (509)
Q Consensus 329 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g 398 (509)
.+++++|+..|++..+ .+ +...+..+...|.. .+++++|...+++.-...+...+..+...+.. .+
T Consensus 125 ~~~~~~~~A~~~~~~a~~-~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~ 200 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACD-LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATK 200 (273)
T ss_dssp SSCCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCC
T ss_pred CcccCHHHHHHHHHHHHh-cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCc
Confidence 5555555555555552 11 33444445555554 55555555555554211244555566666666 66
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH----cCCchHHHHHHHHHHhCC
Q 010496 399 DIILAERLMKYLVDLDPGVDSNYVLLANMYAA----VGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~ 448 (509)
++++|...++++.+.++ +..+..++.+|.+ .+++++|.+.|++..+.|
T Consensus 201 ~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 201 NFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 77777777777766644 4566667777776 677777777777766654
No 46
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.62 E-value=1.7e-13 Score=122.00 Aligned_cols=205 Identities=15% Similarity=0.018 Sum_probs=101.4
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 010496 180 AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDL 259 (509)
Q Consensus 180 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (509)
...+..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~- 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG- 113 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH-
Confidence 3444555555555555555555555555432 2234444444444555555555555555544443 223333333333
Q ss_pred HHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCHHHHHHH
Q 010496 260 YSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKP-DGVSFTGALTACSHAGLIEDGLRY 338 (509)
Q Consensus 260 ~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~a~~~ 338 (509)
.+...|++++|.+.++++...+..| +...+..+...+...|++++|...
T Consensus 114 ------------------------------~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 114 ------------------------------FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp ------------------------------HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ------------------------------HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444444444444444444311222 233444455555555555555555
Q ss_pred HHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 339 FDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
++++.+.. +.+...+..+...|...|++++|...++++ ...| +...+..+...+...|++++|.+.++++.+..|.
T Consensus 164 ~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhcC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 55555321 223445555555555555565555555554 2222 3445555555666666666666666666666665
Q ss_pred CCc
Q 010496 417 VDS 419 (509)
Q Consensus 417 ~~~ 419 (509)
++.
T Consensus 242 ~~~ 244 (252)
T 2ho1_A 242 SLE 244 (252)
T ss_dssp SHH
T ss_pred CHH
Confidence 443
No 47
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.62 E-value=1.7e-14 Score=138.66 Aligned_cols=262 Identities=14% Similarity=0.055 Sum_probs=164.2
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----hHHHHHHHHHHccCCHHHHHHHHHHHHHc----C-CCCcHhHHHH
Q 010496 185 ALLNGFVKRGYFEEALECFREMQISGVEPDY----VTIISVLNACANVGTLGIGLWIHRYVLKQ----D-FKDNVKVCNT 255 (509)
Q Consensus 185 ~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~ 255 (509)
.+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...++++++. + .+....++..
T Consensus 53 ~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 53 LEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHH
Confidence 44455566666666666666665542 1122 24555555566666666666666655543 1 1223445566
Q ss_pred HHHHHHhcCCHHHHHHHHHhccCC---------ChhhHHHHHHHHHhCCC-----------------hHHHHHHHHHHHH
Q 010496 256 LIDLYSRCGCIEFARQVFQRMHKR---------TLVSWNSIIVGFAVNGF-----------------VGEALEYFNSMQK 309 (509)
Q Consensus 256 l~~~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~l~~~~~~~~~-----------------~~~A~~~~~~m~~ 309 (509)
+..+|...|++++|...|+++.+. ...++..+...|...|+ +++|+..+++..+
T Consensus 132 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~ 211 (411)
T 4a1s_A 132 LGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLK 211 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 666666666666666666654421 12355666666666666 6677666666543
Q ss_pred C----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhC-C
Q 010496 310 E----GFKP-DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR----IEHYGCIVDLYSRAGRLEDALNVVENM-P 379 (509)
Q Consensus 310 ~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 379 (509)
. +..+ ...++..+...+...|++++|...+++..+...-..+ ...+..+...|...|++++|.+.+++. .
T Consensus 212 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 291 (411)
T 4a1s_A 212 LMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLA 291 (411)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 2 1111 1235666777777888888888888777642211111 236777788888888888888888765 1
Q ss_pred ----CCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 380 ----MKP---NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV------DSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 380 ----~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
... ...++..+...+...|++++|...++++++..+.. ..++..++.+|.+.|++++|.+.+++..+
T Consensus 292 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 292 LAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 111 14577778888888999999999998888764432 23688888999999999999999988765
Q ss_pred C
Q 010496 447 R 447 (509)
Q Consensus 447 ~ 447 (509)
.
T Consensus 372 ~ 372 (411)
T 4a1s_A 372 L 372 (411)
T ss_dssp H
T ss_pred H
Confidence 3
No 48
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.62 E-value=5.9e-13 Score=120.17 Aligned_cols=187 Identities=10% Similarity=-0.013 Sum_probs=137.0
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC-CHhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHhHHHHHH
Q 010496 148 SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR-DAISWTALLNGFVK----RGYFEEALECFREMQISGVEPDYVTIISVL 222 (509)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 222 (509)
++.++..+...+...|++++|...|+....+ +..++..+...|.. .+++++|+..|++..+.+ +...+..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 6678888999999999999999999977655 67889999999999 999999999999999875 678888899
Q ss_pred HHHHc----cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHHHHHHhccCC-ChhhHHHHHHHHHh
Q 010496 223 NACAN----VGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR----CGCIEFARQVFQRMHKR-TLVSWNSIIVGFAV 293 (509)
Q Consensus 223 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~ 293 (509)
..+.. .+++++|...+++..+.+ +...+..+..+|.. .+++++|...|++..+. +...+..+...|..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 158 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHc
Confidence 99998 999999999999999875 66777778888877 77777777777665432 33445555555554
Q ss_pred ----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCCHHHHHHHHHHhH
Q 010496 294 ----NGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSH----AGLIEDGLRYFDIMK 343 (509)
Q Consensus 294 ----~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~~~ 343 (509)
.+++++|+..|++..+.+ +...+..+...+.. .+++++|...+++..
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~ 213 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKAC 213 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence 555555555555555432 23334444444444 455555555555444
No 49
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.61 E-value=7.4e-14 Score=125.97 Aligned_cols=230 Identities=8% Similarity=-0.021 Sum_probs=189.3
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC--CChh----hHHHHH
Q 010496 215 YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK--RTLV----SWNSII 288 (509)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----~~~~l~ 288 (509)
...+......+...|++++|...++++++.. +.+..++..+..+|...|++++|...++++.+ ++.. +|..+.
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg 81 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYG 81 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHH
Confidence 3455667788999999999999999999886 56677899999999999999999999998875 2332 488999
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCh
Q 010496 289 VGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRL 368 (509)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 368 (509)
..+...|++++|+..|++..+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...+++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999863 335678889999999999999999999999842 334577788787344445699
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCCC-----chHHHHHHHHHHcCCch
Q 010496 369 EDALNVVENM-PMKP-NEVVLGSLLAACRTKGD---IILAERLMKYLVDLD---PGVD-----SNYVLLANMYAAVGKWD 435 (509)
Q Consensus 369 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~---~~~~-----~~~~~l~~~~~~~g~~~ 435 (509)
++|.+.++++ ...| +...+..+...+...|+ +++|...++++++.. |.+. .+|..++..|.+.|+++
T Consensus 159 ~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 238 (272)
T 3u4t_A 159 VKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV 238 (272)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence 9999999887 4455 46788888888888888 888999999998865 3321 47888999999999999
Q ss_pred HHHHHHHHHHhCC
Q 010496 436 GAGKIRRTMKGRG 448 (509)
Q Consensus 436 ~A~~~~~~m~~~~ 448 (509)
+|.+.+++..+..
T Consensus 239 ~A~~~~~~al~~~ 251 (272)
T 3u4t_A 239 KADAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999998753
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.61 E-value=7e-14 Score=131.50 Aligned_cols=228 Identities=12% Similarity=0.051 Sum_probs=194.9
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC-HHHHHHHHHhccC---CChhhHHHHHHH
Q 010496 215 YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGC-IEFARQVFQRMHK---RTLVSWNSIIVG 290 (509)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~---~~~~~~~~l~~~ 290 (509)
...|..+..++...|++++|+..++++++.. |.+..+|+.+..++...|+ +++|+..|+++.+ .+...|..+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4567777888899999999999999999987 7789999999999999997 9999999999873 467899999999
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHh-cCChH
Q 010496 291 FAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSR-AGRLE 369 (509)
Q Consensus 291 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~ 369 (509)
+...|++++|+..|+++++.. +-+...|..+..++.+.|++++|+..++++.+. .+-+...|+.+..++.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999973 336788899999999999999999999999953 23468889999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC--------
Q 010496 370 DA-----LNVVENM-PMKP-NEVVLGSLLAACRTKG--DIILAERLMKYLVDLDPGVDSNYVLLANMYAAVG-------- 432 (509)
Q Consensus 370 ~A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 432 (509)
+| ++.+++. .+.| +...|..+...+...| ++++|.+.+.++ +..|+++.++..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777665 5566 5678998888888888 689999999998 888888889999999999874
Q ss_pred -CchHHHHHHHHH-HhC
Q 010496 433 -KWDGAGKIRRTM-KGR 447 (509)
Q Consensus 433 -~~~~A~~~~~~m-~~~ 447 (509)
.+++|+++++++ .+.
T Consensus 332 ~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 332 DILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 258999999998 553
No 51
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.61 E-value=2.4e-14 Score=126.79 Aligned_cols=206 Identities=13% Similarity=0.078 Sum_probs=106.0
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhC
Q 010496 218 IISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVN 294 (509)
Q Consensus 218 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~ 294 (509)
|..+...+...|++++|..+++++.+.. +.+..++..+..++...|++++|.+.|+++. ..+...+..+...+...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHh
Confidence 3334444444444455544444444433 3344444445555555555555555554443 12344455555555555
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010496 295 GFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNV 374 (509)
Q Consensus 295 ~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 374 (509)
|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|.+.
T Consensus 105 ~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~ 181 (243)
T 2q7f_A 105 EMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQ 181 (243)
T ss_dssp TCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666666666555542 224455555666666666666666666666632 123455566666666666666666666
Q ss_pred HHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 010496 375 VENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANM 427 (509)
Q Consensus 375 ~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 427 (509)
++++ ...| +..++..+...+...|++++|.+.++++++..|.++..+..+...
T Consensus 182 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 182 FAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 6654 2222 455666666777777777777777777777777666555554443
No 52
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.61 E-value=1.3e-13 Score=133.77 Aligned_cols=336 Identities=12% Similarity=-0.013 Sum_probs=232.0
Q ss_pred cchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCc---hHHHHHHHhcCCCChHHHHHHHHHHHhCC-----CHHH
Q 010496 96 QCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRM---DLATVVFDAMRVKSSFTWNAMIDGYMRRG-----DIES 167 (509)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~ 167 (509)
|+++.|...+....+.| ++.++..|..+|...|+. ++|+..|++....++..+..+...+...+ ++++
T Consensus 17 g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~ 92 (452)
T 3e4b_A 17 GDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHE 92 (452)
T ss_dssp HHHHHHHHHHHHHHHHT----CCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHH
Confidence 89999999999998886 245566778888888888 99999999988777777778877666655 7889
Q ss_pred HHHHHhcCCCC-CHhHHHHHHHHHHHcCChH---HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 010496 168 AVRMFDEMPVR-DAISWTALLNGFVKRGYFE---EALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLK 243 (509)
Q Consensus 168 A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~---~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 243 (509)
|...|+....+ +..++..|...|...+... ++.+.+......| +......+...|...+.++++......+.+
T Consensus 93 A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~ 169 (452)
T 3e4b_A 93 AESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICK 169 (452)
T ss_dssp HHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence 99999877654 5668888888888776544 4555555555544 345566677777777755444443333322
Q ss_pred cCCCCcHhHHHHHHHHHHhcC---CHHHHHHHHHhccCC---ChhhHHHHHHHHHhC----CChHHHHHHHHHHHHCCCC
Q 010496 244 QDFKDNVKVCNTLIDLYSRCG---CIEFARQVFQRMHKR---TLVSWNSIIVGFAVN----GFVGEALEYFNSMQKEGFK 313 (509)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~----~~~~~A~~~~~~m~~~g~~ 313 (509)
.-...+...+..|..+|...| ++++|++.|++..+. +...+..+...|... +++++|+..|++.. .|
T Consensus 170 ~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g-- 246 (452)
T 3e4b_A 170 AALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG-- 246 (452)
T ss_dssp HHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG--
T ss_pred HHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC--
Confidence 222334448889999999999 999999999988643 333446677777654 79999999999988 43
Q ss_pred CCHHHHHHHHHH-H--hccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHhCCCCCCHH
Q 010496 314 PDGVSFTGALTA-C--SHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAG-----RLEDALNVVENMPMKPNEV 385 (509)
Q Consensus 314 p~~~~~~~li~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~~~~~~~~~p~~~ 385 (509)
+...+..+... + ...+++++|...|++..+ .+ +...+..|...|. .| ++++|.++|++.- ..+..
T Consensus 247 -~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~ 319 (452)
T 3e4b_A 247 -YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVA 319 (452)
T ss_dssp -STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHH
T ss_pred -CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHH
Confidence 34455555555 3 568999999999999984 33 6677788888887 45 9999999999988 66788
Q ss_pred HHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH----cCCchHHHHHHHHHHhCCCc
Q 010496 386 VLGSLLAACRT----KGDIILAERLMKYLVDLDPGVDSNYVLLANMYAA----VGKWDGAGKIRRTMKGRGIQ 450 (509)
Q Consensus 386 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~ 450 (509)
.+..|...|.. ..++++|...|+++.+.+ ++.....|+.+|.. ..+.++|...|++..+.|..
T Consensus 320 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~ 390 (452)
T 3e4b_A 320 ADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP 390 (452)
T ss_dssp HHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence 88888877766 349999999999998754 56788999999985 46899999999999998854
No 53
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.60 E-value=6.4e-14 Score=134.25 Aligned_cols=268 Identities=13% Similarity=0.084 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHhcCCC---CC----HhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHhH
Q 010496 150 FTWNAMIDGYMRRGDIESAVRMFDEMPV---RD----AISWTALLNGFVKRGYFEEALECFREMQIS----GVEP-DYVT 217 (509)
Q Consensus 150 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~ 217 (509)
..+......+...|++++|...|+.... .+ ...+..+...+...|++++|...+++.... +-.| ....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 3344455555556666666666554421 12 234555555556666666666665554332 1111 1233
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCC----C-CcHhHHHHHHHHHHhcCC--------------------HHHHHHH
Q 010496 218 IISVLNACANVGTLGIGLWIHRYVLKQDF----K-DNVKVCNTLIDLYSRCGC--------------------IEFARQV 272 (509)
Q Consensus 218 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~-~~~~~~~~l~~~~~~~g~--------------------~~~a~~~ 272 (509)
+..+...+...|++++|...++++.+... + ....++..+..+|...|+ +++|.+.
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 44455555555666666655555543210 0 012245555555555555 5555555
Q ss_pred HHhccC-----C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHH
Q 010496 273 FQRMHK-----R----TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGF-KPD----GVSFTGALTACSHAGLIEDGLRY 338 (509)
Q Consensus 273 ~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~~~~a~~~ 338 (509)
+++..+ . ...++..+...+...|++++|...+++..+... .++ ..++..+...+...|++++|...
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 249 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 249 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 544321 0 112344444555555555555555555443200 011 11344444445555555555555
Q ss_pred HHHhHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 010496 339 FDIMKKIYRVSPR----IEHYGCIVDLYSRAGRLEDALNVVENM-P---MKPN----EVVLGSLLAACRTKGDIILAERL 406 (509)
Q Consensus 339 ~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~ 406 (509)
+++..+...-..+ ..++..+...|...|++++|.+.+++. . ..++ ..++..+...+...|++++|.+.
T Consensus 250 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 329 (406)
T 3sf4_A 250 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHF 329 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5544421110011 233444444555555555555554443 0 0011 22444444445555555555555
Q ss_pred HHHHHhcCCCC
Q 010496 407 MKYLVDLDPGV 417 (509)
Q Consensus 407 ~~~~~~~~~~~ 417 (509)
++++++..+..
T Consensus 330 ~~~al~~~~~~ 340 (406)
T 3sf4_A 330 AEKHLEISREV 340 (406)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 55555444333
No 54
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.60 E-value=4.9e-14 Score=127.33 Aligned_cols=237 Identities=8% Similarity=-0.127 Sum_probs=162.2
Q ss_pred CCCHHHHHHHHhcCCCC-------CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHH
Q 010496 162 RGDIESAVRMFDEMPVR-------DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIG 234 (509)
Q Consensus 162 ~~~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 234 (509)
.|++++|+..|+.+... +..++..+...+...|++++|...|+++.+.. +.+...+..+..++...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 45566666666655431 45567777788888888888888888887753 34567777788888888888888
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 010496 235 LWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK--RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGF 312 (509)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 312 (509)
...++++++.. +.+..++..+..+|...|++++|.+.|+++.+ |+.......+..+...|++++|...+++.....
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~- 174 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS- 174 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-
Confidence 88888888765 55677788888888888888888888887753 333333444445566688888888887777652
Q ss_pred CCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC-----HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHH
Q 010496 313 KPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR-----IEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEVV 386 (509)
Q Consensus 313 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~ 386 (509)
+++...+ .++..+...++.++|...++++.+ ..|. ...+..+...|.+.|++++|...++++ ...|+..
T Consensus 175 ~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~- 249 (275)
T 1xnf_A 175 DKEQWGW-NIVEFYLGNISEQTLMERLKADAT---DNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF- 249 (275)
T ss_dssp CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC-
T ss_pred CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhc---ccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhH-
Confidence 3333333 366667777888888888887762 2221 467788888888889999998888876 5556332
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 010496 387 LGSLLAACRTKGDIILAERLM 407 (509)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~ 407 (509)
.....++...|++++|++.+
T Consensus 250 -~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 250 -VEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -HHHHHHHHHHHHHHHC----
T ss_pred -HHHHHHHHHHHHHHhhHHHH
Confidence 22244566777888877765
No 55
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.60 E-value=2.4e-14 Score=133.16 Aligned_cols=264 Identities=15% Similarity=0.060 Sum_probs=185.0
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCcHhHH
Q 010496 183 WTALLNGFVKRGYFEEALECFREMQISGVEPD----YVTIISVLNACANVGTLGIGLWIHRYVLKQ----DF-KDNVKVC 253 (509)
Q Consensus 183 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~ 253 (509)
+......+...|++++|..+|+++.+.. +.+ ...+..+...+...|++++|...++++.+. +. +....++
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3445566777777777777777777653 222 245666677777777777777777766543 11 1224566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHhCCC--------------------hHHHHHHH
Q 010496 254 NTLIDLYSRCGCIEFARQVFQRMHK-----RT----LVSWNSIIVGFAVNGF--------------------VGEALEYF 304 (509)
Q Consensus 254 ~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~--------------------~~~A~~~~ 304 (509)
..+..+|...|++++|...+++..+ .+ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 7777777788888888877776542 12 2366777777777777 78888877
Q ss_pred HHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHH
Q 010496 305 NSMQKE----GFKP-DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR----IEHYGCIVDLYSRAGRLEDALNVV 375 (509)
Q Consensus 305 ~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~ 375 (509)
++.... +..+ ....+..+...+...|++++|...+++..+.....++ ..++..+...+...|++++|...+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 776542 1111 1346667777888899999999998887642211111 336778888899999999999988
Q ss_pred HhC-C---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHHcCCchHHHHHH
Q 010496 376 ENM-P---MKPN----EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV------DSNYVLLANMYAAVGKWDGAGKIR 441 (509)
Q Consensus 376 ~~~-~---~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~ 441 (509)
++. . ..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|.+.|++++|.+.+
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 326 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA 326 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 775 1 1112 4577888889999999999999999998865442 236888999999999999999999
Q ss_pred HHHHhC
Q 010496 442 RTMKGR 447 (509)
Q Consensus 442 ~~m~~~ 447 (509)
++..+.
T Consensus 327 ~~a~~~ 332 (338)
T 3ro2_A 327 EKHLEI 332 (338)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 998764
No 56
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.60 E-value=4.9e-13 Score=116.60 Aligned_cols=133 Identities=13% Similarity=-0.017 Sum_probs=54.2
Q ss_pred HHHHHHHHHhC-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 010496 284 WNSIIVGFAVN-GFVGEALEYFNSMQKEGFKPD-GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDL 361 (509)
Q Consensus 284 ~~~l~~~~~~~-~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 361 (509)
+..+...+... |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..+...
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~ 156 (225)
T 2vq2_A 79 NNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELART 156 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHH
Confidence 33333334444 444444444444433111122 233344444444444444444444444421 11123334444444
Q ss_pred HHhcCChHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC
Q 010496 362 YSRAGRLEDALNVVENM-PMK--PNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD 418 (509)
Q Consensus 362 ~~~~g~~~~A~~~~~~~-~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 418 (509)
+.+.|++++|.+.++++ ... .+...+..+...+...|+.+.+..+++.+.+..|+++
T Consensus 157 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 157 KMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 44444444444444433 111 1233333344444444555555555555444444443
No 57
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.59 E-value=4.8e-13 Score=119.09 Aligned_cols=194 Identities=12% Similarity=0.001 Sum_probs=162.6
Q ss_pred hHHHHHHHHHHHhCCCHHHHHHHHhcCC---CCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHH
Q 010496 149 SFTWNAMIDGYMRRGDIESAVRMFDEMP---VRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNAC 225 (509)
Q Consensus 149 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 225 (509)
...+..+...+...|++++|.+.|+.+. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 5678888999999999999999998764 3478889999999999999999999999998864 44678888999999
Q ss_pred HccCCHHHHHHHHHHHHHcCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHH
Q 010496 226 ANVGTLGIGLWIHRYVLKQDF-KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEAL 301 (509)
Q Consensus 226 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~ 301 (509)
...|++++|.++++++.+.+. +.+...+..+..++...|++++|.+.|+++.+ .+...+..+...+...|++++|.
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999988322 34677888889999999999999999988753 35677888888888889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 010496 302 EYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344 (509)
Q Consensus 302 ~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 344 (509)
..++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 196 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 196 QYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888887753 34566777777888888888888888888874
No 58
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.59 E-value=3.4e-13 Score=117.62 Aligned_cols=198 Identities=12% Similarity=-0.005 Sum_probs=164.1
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010496 248 DNVKVCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALT 324 (509)
Q Consensus 248 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 324 (509)
.+..++..++..+...|++++|.+.|+++. ..+...+..+...+...|++++|...++++.... +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 345566777777777777777777777654 2345677778888888888888888888888763 346778888999
Q ss_pred HHhcc-CCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 010496 325 ACSHA-GLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDI 400 (509)
Q Consensus 325 ~~~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 400 (509)
.+... |++++|...++++.+ .+..|+ ...+..+...+...|++++|...++++ ...| +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99999 999999999999994 333443 678889999999999999999999887 3344 577899999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 401 ILAERLMKYLVDLDP-GVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 401 ~~a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
++|...++++++..| .++..+..++..+...|+.++|..+++.+.+.
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 999999999999999 88888989999999999999999999998764
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.57 E-value=9e-14 Score=123.00 Aligned_cols=198 Identities=10% Similarity=0.059 Sum_probs=156.8
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 010496 248 DNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALT 324 (509)
Q Consensus 248 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~ 324 (509)
.....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.... +.+...+..+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp ---------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 4556788888999999999999999999864 356788899999999999999999999999863 346788888999
Q ss_pred HHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 010496 325 ACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIIL 402 (509)
Q Consensus 325 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~ 402 (509)
.+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++ ...| +...+..+...+...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHH
Confidence 999999999999999999853 2446778899999999999999999999887 3334 67789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 403 AERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 403 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
|...++++++..|.++..+..++.+|.+.|++++|.+.++++.+..
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 9999999999999988899999999999999999999999998753
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.53 E-value=4.8e-14 Score=135.12 Aligned_cols=261 Identities=14% Similarity=0.064 Sum_probs=165.0
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCC--C-C----hHHHHHHHHHHHhCCCHHHHHHHHhcCCC-------C--CHh
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRV--K-S----SFTWNAMIDGYMRRGDIESAVRMFDEMPV-------R--DAI 181 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~--~~~ 181 (509)
...+..+...+...|++++|+..|+++.. + + ...+..+...+...|++++|...|+.... + ...
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 88 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK 88 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 55666677777777777777777776652 2 2 24566677777777777777777765421 1 244
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHHccCC--------------------HHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGV-EPD----YVTIISVLNACANVGT--------------------LGIGLW 236 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~--------------------~~~a~~ 236 (509)
++..+...+...|++++|...+++...... .++ ..++..+...+...|+ +++|..
T Consensus 89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~ 168 (406)
T 3sf4_A 89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD 168 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence 566677777777777777777777655310 011 2356666677777777 777777
Q ss_pred HHHHHHHc----CC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHhCCChHHHHH
Q 010496 237 IHRYVLKQ----DF-KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK-----RT----LVSWNSIIVGFAVNGFVGEALE 302 (509)
Q Consensus 237 ~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~ 302 (509)
.+.+..+. +. +....++..+..+|...|++++|...+++..+ ++ ..++..+...+...|++++|..
T Consensus 169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 77766543 11 11234566777777777777777777776652 11 1266677777777777777777
Q ss_pred HHHHHHHCCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHH
Q 010496 303 YFNSMQKEGFK-PD----GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR----IEHYGCIVDLYSRAGRLEDALN 373 (509)
Q Consensus 303 ~~~~m~~~g~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~ 373 (509)
.+++....... ++ ..++..+...+...|++++|...+++..+...-..+ ..++..+...|...|++++|.+
T Consensus 249 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 328 (406)
T 3sf4_A 249 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMH 328 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77776642100 11 345666677777777777777777776642211111 4456667777777777777777
Q ss_pred HHHhC
Q 010496 374 VVENM 378 (509)
Q Consensus 374 ~~~~~ 378 (509)
.+++.
T Consensus 329 ~~~~a 333 (406)
T 3sf4_A 329 FAEKH 333 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=1.2e-12 Score=110.42 Aligned_cols=165 Identities=13% Similarity=0.095 Sum_probs=128.6
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHH
Q 010496 280 TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIV 359 (509)
Q Consensus 280 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li 359 (509)
+...|..+...|...|++++|++.|++.++.. +-+...+..+..++.+.|++++|...+..+... .+.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 45567777777777788888888888777753 225567777777888888888888888887742 233466677777
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHH
Q 010496 360 DLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGA 437 (509)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 437 (509)
..+...++++.|...+.+. ...| +...+..+...+...|++++|++.|+++++.+|.++.+|..++.+|.+.|++++|
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 7788888888888888776 3334 5667888888889999999999999999999998888899999999999999999
Q ss_pred HHHHHHHHhC
Q 010496 438 GKIRRTMKGR 447 (509)
Q Consensus 438 ~~~~~~m~~~ 447 (509)
++.|++..+.
T Consensus 161 ~~~~~~al~~ 170 (184)
T 3vtx_A 161 VKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhC
Confidence 9999988764
No 62
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.52 E-value=1.5e-13 Score=134.27 Aligned_cols=192 Identities=10% Similarity=0.003 Sum_probs=138.0
Q ss_pred CcHhHHHHHHHHHHhcCCH-HHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010496 248 DNVKVCNTLIDLYSRCGCI-EFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGAL 323 (509)
Q Consensus 248 ~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 323 (509)
.+...+..+..+|...|++ ++|++.|+++.+ .+...|..+..+|...|++++|+..|++.++. .|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHH
Confidence 3444555555555555555 555555555431 23455666666666666666667767666664 45566677777
Q ss_pred HHHhcc---------CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc--------CChHHHHHHHHhC-CCCC---
Q 010496 324 TACSHA---------GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRA--------GRLEDALNVVENM-PMKP--- 382 (509)
Q Consensus 324 ~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~-~~~p--- 382 (509)
.++... |++++|+..++++.+. .+.+...|..+..+|... |++++|++.|++. ...|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~ 255 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKAS 255 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcc
Confidence 777777 7888888888887742 233567777788888777 8888888888776 4445
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHH
Q 010496 383 -NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 383 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
+...|..+..+|...|++++|.+.|+++++..|.++..+..++.++...|++++|++.+.+
T Consensus 256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6778888999999999999999999999999999888899999999999999998876543
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.51 E-value=3.6e-13 Score=129.36 Aligned_cols=234 Identities=12% Similarity=0.039 Sum_probs=139.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHc----CC-CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc----C-CCCcHhH
Q 010496 183 WTALLNGFVKRGYFEEALECFREMQIS----GV-EPDYVTIISVLNACANVGTLGIGLWIHRYVLKQ----D-FKDNVKV 252 (509)
Q Consensus 183 ~~~li~~~~~~~~~~~A~~~~~~m~~~----~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 252 (509)
+..+...|...|++++|...+++..+. +- ......+..+...+...|++++|...++++.+. + .+....+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 444444444455555555544444331 00 111233444455555555555555555554432 1 1122335
Q ss_pred HHHHHHHHHhcCC-----------------HHHHHHHHHhccC-----C----ChhhHHHHHHHHHhCCChHHHHHHHHH
Q 010496 253 CNTLIDLYSRCGC-----------------IEFARQVFQRMHK-----R----TLVSWNSIIVGFAVNGFVGEALEYFNS 306 (509)
Q Consensus 253 ~~~l~~~~~~~g~-----------------~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~ 306 (509)
+..+..+|...|+ +++|.+.+++..+ . ...++..+...+...|++++|+..+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5556666666666 6666665555431 1 123566667777777777777777777
Q ss_pred HHHCCCC-CC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHh
Q 010496 307 MQKEGFK-PD----GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP----RIEHYGCIVDLYSRAGRLEDALNVVEN 377 (509)
Q Consensus 307 m~~~g~~-p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~ 377 (509)
..+.... ++ ...+..+...+...|++++|...++++.+...-.. ...++..+...|...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6553110 11 22566777778888888888888887764221111 145677788888888999888888877
Q ss_pred C-CC------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 378 M-PM------KP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 378 ~-~~------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
. .. .+ ...++..+...+...|++++|.+.++++++....
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 6 11 11 1347778888999999999999999999887653
No 64
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.48 E-value=3e-12 Score=121.69 Aligned_cols=227 Identities=8% Similarity=-0.014 Sum_probs=119.4
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC------CCcHhHHH
Q 010496 186 LLNGFVKRGYFEEALECFREMQIS----GVEP-DYVTIISVLNACANVGTLGIGLWIHRYVLKQDF------KDNVKVCN 254 (509)
Q Consensus 186 li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 254 (509)
....+...|++++|+..|++..+. +-.+ ...++..+..++...|+++.|...+.+..+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445566677777777777776553 1011 134556666667777777777777766654310 11134566
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHC----CC-CCCHHHHH
Q 010496 255 TLIDLYSRCGCIEFARQVFQRMHK-----RT----LVSWNSIIVGFAVNGFVGEALEYFNSMQKE----GF-KPDGVSFT 320 (509)
Q Consensus 255 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~-~p~~~~~~ 320 (509)
.+..+|...|++++|.+.|++..+ .+ ..++..+..+|...|++++|+..+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 666666666777666666665542 11 124555666666666666666666665541 12 22234455
Q ss_pred HHHHHHhccCCHHHHHHHHHHhHHhcC---CCCCHHHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHHH
Q 010496 321 GALTACSHAGLIEDGLRYFDIMKKIYR---VSPRIEHYGCIVDLYSRAGR---LEDALNVVENMPMKPNE-VVLGSLLAA 393 (509)
Q Consensus 321 ~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~~ 393 (509)
.+..++.+.|++++|...+++..+... .+.....+..+...|...|+ +++|+.++++.+..|+. ..+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 555666666666666666665543111 11111223444445555555 55555555555333322 234444455
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 010496 394 CRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 394 ~~~~g~~~~a~~~~~~~~~ 412 (509)
|...|++++|...++++++
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 5555555555555555544
No 65
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.48 E-value=8.7e-13 Score=122.58 Aligned_cols=235 Identities=12% Similarity=0.060 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CC----cHh
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQIS----GVEP-DYVTIISVLNACANVGTLGIGLWIHRYVLKQDF-KD----NVK 251 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~ 251 (509)
.+..+...+...|++++|.+.+++.... +..| ....+..+...+...|++++|...+++..+... .. ...
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 3444444455555555555554443321 1011 123344445555555555555555555443210 00 122
Q ss_pred HHHHHHHHHHhcCC--------------------HHHHHHHHHhccC-----C----ChhhHHHHHHHHHhCCChHHHHH
Q 010496 252 VCNTLIDLYSRCGC--------------------IEFARQVFQRMHK-----R----TLVSWNSIIVGFAVNGFVGEALE 302 (509)
Q Consensus 252 ~~~~l~~~~~~~g~--------------------~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~ 302 (509)
++..+...|...|+ +++|.+.+++..+ . ...++..+...+...|++++|..
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45555556666666 6666655555431 1 12356666667777777777777
Q ss_pred HHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHH
Q 010496 303 YFNSMQKEGF-KPD----GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR----IEHYGCIVDLYSRAGRLEDALN 373 (509)
Q Consensus 303 ~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~ 373 (509)
.+++..+... .++ ..++..+...+...|++++|...+++..+...-..+ ..++..+...|...|++++|..
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 7776654210 011 235667777788888888888888877642211111 4567778888888899998888
Q ss_pred HHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 374 VVENM-PM---KPN----EVVLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 374 ~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
.+++. .. ..+ ..++..+...+...|++++|...++++++..+.
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 88775 11 111 347778888899999999999999999887654
No 66
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.48 E-value=1.5e-12 Score=123.90 Aligned_cols=225 Identities=10% Similarity=0.014 Sum_probs=174.0
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHc----CCCC-cHhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC-----hhhHH
Q 010496 221 VLNACANVGTLGIGLWIHRYVLKQ----DFKD-NVKVCNTLIDLYSRCGCIEFARQVFQRMHK-----RT-----LVSWN 285 (509)
Q Consensus 221 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-----~~~~~ 285 (509)
....+...|++++|...++++.+. +-++ ...++..+..+|...|++++|...+++..+ ++ ..+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556778999999999999999875 2111 356789999999999999999999988752 11 24788
Q ss_pred HHHHHHHhCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCCHHHHHHHHHHhHHh---cCC-CCCHHHHH
Q 010496 286 SIIVGFAVNGFVGEALEYFNSMQKEGF-KPD----GVSFTGALTACSHAGLIEDGLRYFDIMKKI---YRV-SPRIEHYG 356 (509)
Q Consensus 286 ~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~~~~ 356 (509)
.+...|...|++++|+..+++..+... .++ ..++..+..+|...|++++|...+++..+. .+. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 899999999999999999998875311 111 247788889999999999999999998741 122 23467788
Q ss_pred HHHHHHHhcCChHHHHHHHHhC-CC-----CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHH
Q 010496 357 CIVDLYSRAGRLEDALNVVENM-PM-----KPN-EVVLGSLLAACRTKGD---IILAERLMKYLVDLDPGVDSNYVLLAN 426 (509)
Q Consensus 357 ~li~~~~~~g~~~~A~~~~~~~-~~-----~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~ 426 (509)
.+...|.+.|++++|...+++. .. .|. ...+..+...+...|+ +++|..++++. ...+.....+..++.
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 9999999999999999999886 11 121 2245667778888888 77777777766 222223446889999
Q ss_pred HHHHcCCchHHHHHHHHHHh
Q 010496 427 MYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~ 446 (509)
.|...|++++|.+.+++..+
T Consensus 348 ~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998875
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.45 E-value=3.1e-10 Score=113.94 Aligned_cols=403 Identities=8% Similarity=0.021 Sum_probs=273.5
Q ss_pred CCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccc---hhHHHHHHHHHHHhCCCCCc
Q 010496 41 TVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQC---LFLGAMIHGLVCKLGLDRNN 117 (509)
Q Consensus 41 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~ 117 (509)
.+-|...|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+. ++ .+.+..+|+..+.....+.+
T Consensus 62 np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~--~~~~~~~~v~~lfeRal~~~~~~~s 138 (679)
T 4e6h_A 62 QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDK--MEELDAAVIEPVLARCLSKELGNND 138 (679)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC----CCCHHHHHHHHHHHTCSSSCCCC
T ss_pred CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHHhcCCCCC
Confidence 3468999999999999999999999999999985 344556677667666666 77 99999999999887632234
Q ss_pred hHHHHHHHHHHHhcCCc--------hHHHHHHHhcC------CC-ChHHHHHHHHHHHh---------CCCHHHHHHHHh
Q 010496 118 VMVGTALLDMYAKFGRM--------DLATVVFDAMR------VK-SSFTWNAMIDGYMR---------RGDIESAVRMFD 173 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~--------~~A~~~~~~~~------~~-~~~~~~~l~~~~~~---------~~~~~~A~~~~~ 173 (509)
+..|..-+....+.++. +...++|+... .+ +...|...+..... .++++.+..+|+
T Consensus 139 v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ 218 (679)
T 4e6h_A 139 LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYK 218 (679)
T ss_dssp HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHH
Confidence 88888877766666554 33447777643 23 45678877765442 345788899998
Q ss_pred cCCCC---C-HhHH---HHHHHHH----------HHcCChHHHHHHHHHHHHc--CCC---CC-----------------
Q 010496 174 EMPVR---D-AISW---TALLNGF----------VKRGYFEEALECFREMQIS--GVE---PD----------------- 214 (509)
Q Consensus 174 ~~~~~---~-~~~~---~~li~~~----------~~~~~~~~A~~~~~~m~~~--~~~---p~----------------- 214 (509)
..... + ...| ..+.... -...++..|...+.++... ++. |.
T Consensus 219 raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~ 298 (679)
T 4e6h_A 219 TLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYD 298 (679)
T ss_dssp HHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCC
T ss_pred HHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhH
Confidence 77642 1 1222 2222111 0011233444555443221 111 11
Q ss_pred ---HhHHHHHHHHHHccC-------CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHH-HHHHhccC---CC
Q 010496 215 ---YVTIISVLNACANVG-------TLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFAR-QVFQRMHK---RT 280 (509)
Q Consensus 215 ---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~---~~ 280 (509)
...|...+..--..+ ..+.+..+|++++... +.+..+|...+..+...|+.++|. ++|++... .+
T Consensus 299 ~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s 377 (679)
T 4e6h_A 299 VQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNS 377 (679)
T ss_dssp HHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCC
Confidence 122333333322222 1244567888888774 678888999999888999988886 99988763 35
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHHhccCCHHHHHHHH
Q 010496 281 LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGF---------KPD------------GVSFTGALTACSHAGLIEDGLRYF 339 (509)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~---------~p~------------~~~~~~li~~~~~~~~~~~a~~~~ 339 (509)
...|...+......|+++.|.++|++++.... .|+ ...|...+....+.|+.+.|..+|
T Consensus 378 ~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf 457 (679)
T 4e6h_A 378 AVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIF 457 (679)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 56677788888899999999999999886410 132 235777777777889999999999
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 340 DIMKKIYRVSPRIEHYGCIVDLYSRA-GRLEDALNVVENM-P-MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
.++.+..+ ......|...+..-.+. ++.+.|..+|+.. + ..-+...|...+......|+.+.|..+|++++...|+
T Consensus 458 ~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~ 536 (679)
T 4e6h_A 458 GKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISD 536 (679)
T ss_dssp HHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSS
T ss_pred HHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 99985311 12234454444444444 4589999999886 3 3335667778888888899999999999999998773
Q ss_pred ---CCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 417 ---VDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 417 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
....|...+..-.+.|+.+.+.++.+++.+.-
T Consensus 537 ~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 537 SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 33568888888889999999999999998754
No 68
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=2.1e-13 Score=125.41 Aligned_cols=165 Identities=11% Similarity=0.064 Sum_probs=104.4
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHc-------CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc------C
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQIS-------GVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQ------D 245 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 245 (509)
+..++..+...+...|++++|..+++++.+. ........+..+...+...|++++|..+++++++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 3566778888888888888888888887763 11223456667777788888888888888877754 2
Q ss_pred -CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-----------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC---
Q 010496 246 -FKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR-----------TLVSWNSIIVGFAVNGFVGEALEYFNSMQKE--- 310 (509)
Q Consensus 246 -~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--- 310 (509)
.+....++..+..+|...|++++|.+.|+++.+. ....+..+...+...|++++|+..++++...
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1233556677777777777777777777665421 1234555566666666666666666665543
Q ss_pred ---CCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 311 ---GFKPD-GVSFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 311 ---g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
+..|. ..++..+..++...|++++|...++++.
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 11222 2344555555666666666666666655
No 69
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.45 E-value=8.1e-11 Score=108.09 Aligned_cols=218 Identities=10% Similarity=0.028 Sum_probs=147.3
Q ss_pred HHHHHHHHHHHHcCCCCCHhHHHHHHHHHH-------ccCCH-------HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 010496 197 EEALECFREMQISGVEPDYVTIISVLNACA-------NVGTL-------GIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR 262 (509)
Q Consensus 197 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (509)
++|..+|++..... +-+...|..++..+. ..|++ ++|..+|++.++.-.|.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56777777777642 335566666665554 34664 7788888887773124556677778888888
Q ss_pred cCCHHHHHHHHHhccC--C-Chh-hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-ccCCHHHHHH
Q 010496 263 CGCIEFARQVFQRMHK--R-TLV-SWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACS-HAGLIEDGLR 337 (509)
Q Consensus 263 ~g~~~~a~~~~~~~~~--~-~~~-~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~~~~~~a~~ 337 (509)
.|++++|.++|+++.+ | +.. .|..++..+.+.|++++|..+|++.++.. +++...|........ ..|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888888877664 2 233 67777777777888888888888877753 223334433332221 2578888888
Q ss_pred HHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010496 338 YFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-P---MKP--NEVVLGSLLAACRTKGDIILAERLMKYLV 411 (509)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 411 (509)
+|++..+.. +.+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.++|..++++++
T Consensus 191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888877532 235667777777788888888888888776 2 244 35577777777777888888888888888
Q ss_pred hcCCCCC
Q 010496 412 DLDPGVD 418 (509)
Q Consensus 412 ~~~~~~~ 418 (509)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8777644
No 70
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.44 E-value=1.4e-10 Score=109.68 Aligned_cols=264 Identities=11% Similarity=-0.008 Sum_probs=175.6
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHh----HHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCc----HhHHH
Q 010496 184 TALLNGFVKRGYFEEALECFREMQISGVEPDYV----TIISVLNACANVGTLGIGLWIHRYVLKQDF-KDN----VKVCN 254 (509)
Q Consensus 184 ~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~ 254 (509)
......+...|++++|...+++.....-..+.. .+..+...+...|+++.|...+++..+... ..+ ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344455667788888888888776643111221 344556667778888888888877765310 011 23356
Q ss_pred HHHHHHHhcCCHHHHHHHHHhccC----------C-ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC--C--CHHHH
Q 010496 255 TLIDLYSRCGCIEFARQVFQRMHK----------R-TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFK--P--DGVSF 319 (509)
Q Consensus 255 ~l~~~~~~~g~~~~a~~~~~~~~~----------~-~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~--p--~~~~~ 319 (509)
.+...+...|++++|.+.+++..+ + ....+..+...+...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 677778888888888888877642 1 1234566777788888888888888887764221 1 23456
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHH-----HHHHHHHhcCChHHHHHHHHhCC-CCCC-----HHHHH
Q 010496 320 TGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYG-----CIVDLYSRAGRLEDALNVVENMP-MKPN-----EVVLG 388 (509)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~~-~~p~-----~~~~~ 388 (509)
..+...+...|++++|...+++.............+. ..+..+...|++++|...+++.. ..|. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 6777788888999999999888774322111111111 23344778899999999998872 2221 23566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 389 SLLAACRTKGDIILAERLMKYLVDLDPGV------DSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
.+...+...|++++|...++++.+..+.. ...+..++.++...|+.++|...+++....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 77788889999999999999887753321 125677788889999999999999887653
No 71
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.43 E-value=5.9e-11 Score=112.52 Aligned_cols=227 Identities=12% Similarity=0.052 Sum_probs=123.7
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----C-CcHhHH
Q 010496 185 ALLNGFVKRGYFEEALECFREMQISGV-EPD----YVTIISVLNACANVGTLGIGLWIHRYVLKQDF-----K-DNVKVC 253 (509)
Q Consensus 185 ~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~ 253 (509)
.....+...|++++|+..|++..+... .++ ..++..+..++...|+++.|...+.+..+... . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 344556677777788777777765310 122 33556666677777777777777776664310 1 123456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhccC-----CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHH-----CCCCCCHHHH
Q 010496 254 NTLIDLYSRCGCIEFARQVFQRMHK-----RT----LVSWNSIIVGFAVNGFVGEALEYFNSMQK-----EGFKPDGVSF 319 (509)
Q Consensus 254 ~~l~~~~~~~g~~~~a~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~~p~~~~~ 319 (509)
+.+..+|...|++++|.+.|++..+ .+ ..++..+..+|...|++++|+..+++... .. +....++
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 264 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVL 264 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHH
Confidence 6667777777777777776665542 11 13455566666666666666666666554 21 1124455
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCC--C-CHHHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCCH-HHHHHHHH
Q 010496 320 TGALTACSHAGLIEDGLRYFDIMKKIYRVS--P-RIEHYGCIVDLYSRAGR---LEDALNVVENMPMKPNE-VVLGSLLA 392 (509)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~p~~-~~~~~l~~ 392 (509)
..+..++.+.|++++|...+++..+...-. + ....+..+...|...++ +.+|+..+++.+..|+. ..+..+..
T Consensus 265 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~ 344 (378)
T 3q15_A 265 FGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 555666666666666666666655322211 1 12234444444455555 55555555554333322 23444555
Q ss_pred HHHhcCCHHHHHHHHHHHHh
Q 010496 393 ACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 393 ~~~~~g~~~~a~~~~~~~~~ 412 (509)
.|...|++++|...++++++
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 55555555555555555543
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.42 E-value=6.3e-11 Score=108.79 Aligned_cols=212 Identities=8% Similarity=-0.011 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh-------cCCH-------HHHHHHHHhccC---C-ChhhHHHHHHHHHh
Q 010496 232 GIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR-------CGCI-------EFARQVFQRMHK---R-TLVSWNSIIVGFAV 293 (509)
Q Consensus 232 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~---~-~~~~~~~l~~~~~~ 293 (509)
++|..+|+++++.. |.+...|..++..+.. .|++ ++|..+|++..+ | +...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 68889999999875 7788899888888764 5885 899999998765 2 45689999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHH-hcCChHH
Q 010496 294 NGFVGEALEYFNSMQKEGFKPD-GV-SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYS-RAGRLED 370 (509)
Q Consensus 294 ~~~~~~A~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 370 (509)
.|++++|..+|+++++. .|+ .. .|..++..+.+.|++++|..+|+++.+. .+.+...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999985 454 33 7888889999999999999999999942 2334555554443322 3799999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010496 371 ALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDL---DPG-VDSNYVLLANMYAAVGKWDGAGKIRRTM 444 (509)
Q Consensus 371 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 444 (509)
|..+|++. ...| +...|..++..+.+.|++++|..+|+++++. .|. ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999887 3334 5778999999999999999999999999996 343 4557889999999999999999999999
Q ss_pred HhCC
Q 010496 445 KGRG 448 (509)
Q Consensus 445 ~~~~ 448 (509)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8764
No 73
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.42 E-value=4.2e-11 Score=100.82 Aligned_cols=162 Identities=11% Similarity=0.096 Sum_probs=94.2
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLID 258 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (509)
++..|..+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|...+..+.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 34556666666666666666666666665542 2245555566666666666666666666665554 444555555566
Q ss_pred HHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010496 259 LYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDG 335 (509)
Q Consensus 259 ~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 335 (509)
.+...++++.|...+.+.. ..+...+..+..++...|++++|++.|++..+.. +.+..++..+..++.+.|++++|
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHH
Confidence 6666666666666665543 2244555555666666666666666666665542 22445555566666666666666
Q ss_pred HHHHHHhH
Q 010496 336 LRYFDIMK 343 (509)
Q Consensus 336 ~~~~~~~~ 343 (509)
+..|+++.
T Consensus 161 ~~~~~~al 168 (184)
T 3vtx_A 161 VKYFKKAL 168 (184)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666655
No 74
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.41 E-value=1.3e-12 Score=120.06 Aligned_cols=246 Identities=15% Similarity=0.074 Sum_probs=153.3
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHhcCCC--------C---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHc------C
Q 010496 148 SSFTWNAMIDGYMRRGDIESAVRMFDEMPV--------R---DAISWTALLNGFVKRGYFEEALECFREMQIS------G 210 (509)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------~ 210 (509)
...++..+...+...|++++|..+|+++.. . ...++..+...|...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 345677888888999999999998887653 1 3556778888899999999999999888764 2
Q ss_pred CCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHHc------CC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---
Q 010496 211 VEP-DYVTIISVLNACANVGTLGIGLWIHRYVLKQ------DF-KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR--- 279 (509)
Q Consensus 211 ~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 279 (509)
-.| ....+..+...+...|++++|..+++++.+. +. +....++..+..++...|++++|.++|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 122 3556777888888999999999999888764 21 234566788888899999999999888876531
Q ss_pred --------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC
Q 010496 280 --------TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR 351 (509)
Q Consensus 280 --------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 351 (509)
...++..+...+...|++++|...++++.+.. |+. .+..+- ....... ..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~---~~~~~~~----------------~~ 243 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSVD---DENKPIW----------------MH 243 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC---------CCHH----------------HH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCCC---cchHHHH----------------HH
Confidence 23467778888889999999999998887631 110 000000 0000000 00
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENMP-MKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDP 415 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 415 (509)
...+..+...+...+.+.++...++... ..| +..++..+..+|...|++++|.+.++++++..|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 1111222223333444445555554442 223 234666667777777777777777777766544
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.39 E-value=9.3e-12 Score=126.46 Aligned_cols=163 Identities=14% Similarity=0.171 Sum_probs=127.5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 010496 281 LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVD 360 (509)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 360 (509)
..+|+.+...+.+.|++++|++.|++.++.. +-+...+..+..++.+.|++++|+..|+++.+.. +-+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 4566777777777777777777777777652 2245677777778888888888888888877421 224677888888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHH
Q 010496 361 LYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAG 438 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 438 (509)
+|.+.|++++|++.|++. .+.| +...|..+..++...|++++|++.|+++++.+|+++.++..++.+|...|++++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 888888888888888776 4555 46688888899999999999999999999999998889999999999999999999
Q ss_pred HHHHHHHh
Q 010496 439 KIRRTMKG 446 (509)
Q Consensus 439 ~~~~~m~~ 446 (509)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887754
No 76
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.38 E-value=1.6e-11 Score=119.89 Aligned_cols=208 Identities=13% Similarity=0.025 Sum_probs=125.1
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCH-HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 010496 196 FEEALECFREMQISGVEPDYVTIISVLNACANVGTL-GIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQ 274 (509)
Q Consensus 196 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 274 (509)
+++++..++...... +.+...+..+..++...|++ ++|.+.|+++++.. +.+..++..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 344555555444321 23455555666666666666 66666666666654 4455666666666666666666666666
Q ss_pred hccC--CChhhHHHHHHHHHhC---------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------CCHHHH
Q 010496 275 RMHK--RTLVSWNSIIVGFAVN---------GFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHA--------GLIEDG 335 (509)
Q Consensus 275 ~~~~--~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------~~~~~a 335 (509)
++.+ |+...+..+...+... |++++|+..|++.++.. +-+...+..+..++... |++++|
T Consensus 162 ~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A 240 (474)
T 4abn_A 162 GALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQA 240 (474)
T ss_dssp HHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHhhCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHH
Confidence 6542 3445555566666666 66677777777666642 22455666666666666 667777
Q ss_pred HHHHHHhHHhcCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 010496 336 LRYFDIMKKIYRVS---PRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMK 408 (509)
Q Consensus 336 ~~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 408 (509)
+..|+++.+.. + .+...|..+..+|...|++++|.+.|++. ...| +...+..+...+...|++++|.+.+.
T Consensus 241 ~~~~~~al~~~--p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 241 LSAYAQAEKVD--RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHC--GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC--CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 77777766321 1 25666667777777777777777777665 3334 34466666666666666666665443
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.37 E-value=2.8e-11 Score=101.75 Aligned_cols=130 Identities=14% Similarity=0.021 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 010496 316 GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-P-MKPNEVVLGSLLAA 393 (509)
Q Consensus 316 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~ 393 (509)
...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.++++ . ...+...+..+...
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 119 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVA 119 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHH
Confidence 334444444444445555555555544421 1223444444555555555555555555544 1 12245566666667
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 394 CRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 394 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+...|++++|...++++.+..|.++..+..++.++...|++++|.+.++++.+.
T Consensus 120 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 120 LDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 777777777777777777777777677777777777777777777777776653
No 78
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=3e-11 Score=105.62 Aligned_cols=190 Identities=13% Similarity=-0.008 Sum_probs=129.9
Q ss_pred CcHhHHHHHHHHHHhcCCHHHHHHHHHhccC----CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 010496 248 DNVKVCNTLIDLYSRCGCIEFARQVFQRMHK----RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGAL 323 (509)
Q Consensus 248 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li 323 (509)
.++..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..|++..+.. +-+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 4556777788888888888888888887652 566666667778888888888888888887752 22445677777
Q ss_pred HHHhccCCHHHHHHHHHHhHHhcCCCCCH-------HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 010496 324 TACSHAGLIEDGLRYFDIMKKIYRVSPRI-------EHYGCIVDLYSRAGRLEDALNVVENM-PMKPN---EVVLGSLLA 392 (509)
Q Consensus 324 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~ 392 (509)
.++...|++++|+..+++..+.. +.+. ..|..+...+...|++++|++.+++. ...|+ ...+..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 77888888888888888887432 2233 45666777777788888888888775 55665 345666666
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 393 ACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 393 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
++... +...++++....+.+...|... .....+.+++|+..+++..+.
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 66443 3445666666655554333332 234456679999999998875
No 79
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.36 E-value=2.9e-11 Score=114.61 Aligned_cols=226 Identities=10% Similarity=-0.022 Sum_probs=170.9
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcC--CC---CcHhHHHHHHHHHHhcCCHHHHHHHHHhccC-----CC-----hhhH
Q 010496 220 SVLNACANVGTLGIGLWIHRYVLKQD--FK---DNVKVCNTLIDLYSRCGCIEFARQVFQRMHK-----RT-----LVSW 284 (509)
Q Consensus 220 ~l~~~~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-----~~~~ 284 (509)
.....+...|++++|...++++.+.. .+ ....++..+..+|...|+++.|...+++..+ ++ ..++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 34556788999999999999998652 11 1356788999999999999999999887652 12 3478
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc---CCCCCHHHHH
Q 010496 285 NSIIVGFAVNGFVGEALEYFNSMQKE----GFKP-DGVSFTGALTACSHAGLIEDGLRYFDIMKKIY---RVSPRIEHYG 356 (509)
Q Consensus 285 ~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~ 356 (509)
+.+..+|...|++++|++.|++..+. +..+ ...++..+..++...|++++|...+++..+.. +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 88999999999999999999988763 1111 13467788889999999999999999987411 2223367788
Q ss_pred HHHHHHHhcCChHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHH
Q 010496 357 CIVDLYSRAGRLEDALNVVENM----PM--KPN-EVVLGSLLAACRTKGD---IILAERLMKYLVDLDPGVDSNYVLLAN 426 (509)
Q Consensus 357 ~li~~~~~~g~~~~A~~~~~~~----~~--~p~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~ 426 (509)
.+...|.+.|++++|...+++. .. .|. ...+..+...+...++ +.+|...+++.. ..+.....+..++.
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~ 344 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHHHH
Confidence 8999999999999999999876 11 222 3356666666777788 777777777621 11223346788999
Q ss_pred HHHHcCCchHHHHHHHHHHh
Q 010496 427 MYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~ 446 (509)
.|...|++++|.+.|++..+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 99999999999999998764
No 80
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=1.2e-10 Score=101.68 Aligned_cols=204 Identities=12% Similarity=0.038 Sum_probs=159.7
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHH
Q 010496 213 PDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNSIIV 289 (509)
Q Consensus 213 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~ 289 (509)
.|+..+......+...|++++|...|+++++...+++...+..+..++...|++++|++.|++..+. +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4567888889999999999999999999999873378888888999999999999999999998743 4568899999
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC---HHHHHHHH
Q 010496 290 GFAVNGFVGEALEYFNSMQKEGFKPDG-------VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR---IEHYGCIV 359 (509)
Q Consensus 290 ~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~li 359 (509)
++...|++++|+..+++..+.. +.+. ..|..+...+...|++++|+..|+++.+ ..|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 9999999999999999999863 2234 4577778888999999999999999983 3454 56778888
Q ss_pred HHHHhcCChHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 010496 360 DLYSRAGRLEDALNVVENM-P-MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANM 427 (509)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 427 (509)
.+|...|+. .++++ . ...+...|.... ....+.+++|...++++++..|+++.+...+...
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 888766543 22332 1 122344444433 3345679999999999999999987776666554
No 81
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.31 E-value=5.2e-10 Score=93.81 Aligned_cols=152 Identities=15% Similarity=0.057 Sum_probs=70.5
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC
Q 010496 154 AMIDGYMRRGDIESAVRMFDEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGT 230 (509)
Q Consensus 154 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 230 (509)
.+...+...|++++|...|+.+... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 13 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~ 91 (186)
T 3as5_A 13 DKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQK 91 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcC
Confidence 3344444444444444444444321 34445555555555555555555555555432 2234444455555555555
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHH
Q 010496 231 LGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSM 307 (509)
Q Consensus 231 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m 307 (509)
+++|.+.++++.+.. +.+...+..+..++...|++++|.+.++++.+ .+...+..+...+...|++++|...++++
T Consensus 92 ~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 92 YDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 555555555555443 33444444444444444444444444444321 12333344444444444444444444443
No 82
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.30 E-value=1.5e-08 Score=101.80 Aligned_cols=383 Identities=7% Similarity=-0.059 Sum_probs=259.4
Q ss_pred hhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC---chHH
Q 010496 61 IAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGR---MDLA 137 (509)
Q Consensus 61 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A 137 (509)
..+.+..|++.+... +-|..+|..++..+... +....++.+++.++..- |.+...|..-+..-.+.|+ ++.+
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~--~~~~~aR~vyEraL~~f--P~~~~lW~~Yi~~E~~~~~~~~~~~v 122 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSL--KQWKQVYETFDKLHDRF--PLMANIWCMRLSLEFDKMEELDAAVI 122 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTC--CCCHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhhCCcchHHHH
Confidence 344555666666553 44888999999988877 89999999999999884 6668899999999888899 9999
Q ss_pred HHHHHhcCC-----CChHHHHHHHHHHHhCCCH--------HHHHHHHhcC-------CCCCHhHHHHHHHHHH------
Q 010496 138 TVVFDAMRV-----KSSFTWNAMIDGYMRRGDI--------ESAVRMFDEM-------PVRDAISWTALLNGFV------ 191 (509)
Q Consensus 138 ~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~--------~~A~~~~~~~-------~~~~~~~~~~li~~~~------ 191 (509)
..+|++... ++...|...+....+.++. +.+.++|+.. ...+...|...+....
T Consensus 123 ~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~ 202 (679)
T 4e6h_A 123 EPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVN 202 (679)
T ss_dssp HHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCS
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccC
Confidence 999999873 6777888887766665543 3344666642 1224567777665443
Q ss_pred ---HcCChHHHHHHHHHHHHcCCCCCHhHHHH---HHHHHH----------ccCCHHHHHHHHHHHHHc--CC----CCc
Q 010496 192 ---KRGYFEEALECFREMQISGVEPDYVTIIS---VLNACA----------NVGTLGIGLWIHRYVLKQ--DF----KDN 249 (509)
Q Consensus 192 ---~~~~~~~A~~~~~~m~~~~~~p~~~~~~~---l~~~~~----------~~~~~~~a~~~~~~~~~~--~~----~~~ 249 (509)
..++.+.+..+|+.++......-..+|.. +..... ...+++.|...+.++... ++ +..
T Consensus 203 ~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~ 282 (679)
T 4e6h_A 203 KFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPIT 282 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSS
T ss_pred cHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccc
Confidence 23457788999999885321111233322 221110 012234455555443321 11 110
Q ss_pred -------------------HhHHHHHHHHHHhcC-------CHHHHHHHHHhcc---CCChhhHHHHHHHHHhCCChHHH
Q 010496 250 -------------------VKVCNTLIDLYSRCG-------CIEFARQVFQRMH---KRTLVSWNSIIVGFAVNGFVGEA 300 (509)
Q Consensus 250 -------------------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A 300 (509)
...|...+..-...+ ..+.+..+|+++. ......|...+..+...|+.++|
T Consensus 283 ~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 283 LNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp STTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTH
T ss_pred cccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHH
Confidence 134555554433322 1334556677765 34667888888888889999999
Q ss_pred H-HHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc--------CCCC------------CHHHHHHHH
Q 010496 301 L-EYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIY--------RVSP------------RIEHYGCIV 359 (509)
Q Consensus 301 ~-~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~--------~~~~------------~~~~~~~li 359 (509)
. .+|++.... ++.+...+...+....+.|+++.|..+|+++.+.. ...| ...+|...+
T Consensus 363 ~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 363 ITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 7 999999875 44455566677777888999999999999998421 0013 134678888
Q ss_pred HHHHhcCChHHHHHHHHhCC-C--CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCch
Q 010496 360 DLYSRAGRLEDALNVVENMP-M--KPNEVVLGSLLAACRTK-GDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWD 435 (509)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~~-~--~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 435 (509)
....+.|..+.|..+|.++. . .+....|...+..-.+. ++.+.|.++|+.+++..|.++..+...+......|+.+
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~ 521 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEES 521 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHH
Confidence 88888999999999998872 2 12334444333333344 45899999999999999988888889999999999999
Q ss_pred HHHHHHHHHHhCCC
Q 010496 436 GAGKIRRTMKGRGI 449 (509)
Q Consensus 436 ~A~~~~~~m~~~~~ 449 (509)
.|..+|++......
T Consensus 522 ~AR~lferal~~~~ 535 (679)
T 4e6h_A 522 QVKSLFESSIDKIS 535 (679)
T ss_dssp HHHHHHHHHTTTSS
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987653
No 83
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.29 E-value=1.9e-09 Score=101.93 Aligned_cols=232 Identities=12% Similarity=0.006 Sum_probs=128.9
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HhHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCC--C-cH
Q 010496 183 WTALLNGFVKRGYFEEALECFREMQISGV-EPD----YVTIISVLNACANVGTLGIGLWIHRYVLKQ----DFK--D-NV 250 (509)
Q Consensus 183 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~ 250 (509)
++.+...+...|++++|...+++...... .++ ..++..+...+...|++++|...+++..+. +.+ | ..
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 34445555556666666666655543210 011 122344555566666666666666665542 111 1 23
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccC--C------ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCC--HHHHH
Q 010496 251 KVCNTLIDLYSRCGCIEFARQVFQRMHK--R------TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPD--GVSFT 320 (509)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~------~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~--~~~~~ 320 (509)
.++..+..++...|++++|...+++... + ...++..+...+...|++++|...+++.......++ .....
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 3455566666666777777666665431 1 123455666667777777777777777654311111 11111
Q ss_pred ----HHHHHHhccCCHHHHHHHHHHhHHhcCCCC--CHHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCCCH-HH
Q 010496 321 ----GALTACSHAGLIEDGLRYFDIMKKIYRVSP--RIEHYGCIVDLYSRAGRLEDALNVVENM-------PMKPNE-VV 386 (509)
Q Consensus 321 ----~li~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~ 386 (509)
..+..+...|++++|...+++........+ ....+..+...+...|++++|...+++. +..++. ..
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 295 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 295 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence 222335677888888887777763111110 1224556677777788888887777665 111122 25
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 010496 387 LGSLLAACRTKGDIILAERLMKYLVDLD 414 (509)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 414 (509)
+..+..++...|+.++|...+++++...
T Consensus 296 ~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 296 LLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 5556677788888888888888877654
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.25 E-value=3.2e-10 Score=115.18 Aligned_cols=162 Identities=12% Similarity=0.008 Sum_probs=104.2
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLID 258 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (509)
+..+|+.|...|.+.|++++|++.|++..+.. +-+...+..+..++.+.|++++|++.|+++++.. +-+..+|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 35566666667777777777777777666642 2235566666666777777777777777766665 455666666777
Q ss_pred HHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHH
Q 010496 259 LYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDG 335 (509)
Q Consensus 259 ~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a 335 (509)
+|...|++++|++.|++..+ .+...|+.+..+|...|++++|++.|++.++.. +-+...+..+..++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 77777777777777666542 345566666777777777777777777766642 12345666666666677776666
Q ss_pred HHHHHHhH
Q 010496 336 LRYFDIMK 343 (509)
Q Consensus 336 ~~~~~~~~ 343 (509)
.+.++++.
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666554
No 85
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.25 E-value=1.4e-10 Score=105.45 Aligned_cols=187 Identities=10% Similarity=0.014 Sum_probs=119.6
Q ss_pred HHHHhcCCHHHHHHHHHhccCC-----C----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC---CCC--HHHHHHHH
Q 010496 258 DLYSRCGCIEFARQVFQRMHKR-----T----LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGF---KPD--GVSFTGAL 323 (509)
Q Consensus 258 ~~~~~~g~~~~a~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~~~~~~li 323 (509)
..|...|++++|.+.|++..+- + ..+|+.+..+|...|++++|+..|++.+.... .+. ..++..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 124 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELG 124 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3455566666666666554321 1 24566667777777777777777776654210 111 34667777
Q ss_pred HHHhcc-CCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC---H-----HHHHH
Q 010496 324 TACSHA-GLIEDGLRYFDIMKKIYRVSPR----IEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN---E-----VVLGS 389 (509)
Q Consensus 324 ~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~---~-----~~~~~ 389 (509)
..|... |++++|+..|++..+...-..+ ..++..+...|.+.|++++|+..+++. ...|+ . ..+..
T Consensus 125 ~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 204 (292)
T 1qqe_A 125 EILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLK 204 (292)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHH
Confidence 788885 8999998888888743211111 356778888899999999999998876 22222 1 15677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCch-----HHHHHHHHH--HcCCchHHHHHHHHH
Q 010496 390 LLAACRTKGDIILAERLMKYLVDLDPGVDSN-----YVLLANMYA--AVGKWDGAGKIRRTM 444 (509)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~m 444 (509)
+..++...|++++|...++++++..|..... +..++.+|. ..+++++|++.|+++
T Consensus 205 lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 205 KGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 7788889999999999999999988874432 344556554 346677888877554
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.23 E-value=5e-11 Score=107.67 Aligned_cols=152 Identities=11% Similarity=0.010 Sum_probs=84.8
Q ss_pred HcCChHHHHHHHHHHHHc-------CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHc------CC-CCcHhHHHHHH
Q 010496 192 KRGYFEEALECFREMQIS-------GVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQ------DF-KDNVKVCNTLI 257 (509)
Q Consensus 192 ~~~~~~~A~~~~~~m~~~-------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~ 257 (509)
..|++++|+.++++..+. ..+....++..+...+...|++++|...++++++. +. +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 345556666655555431 11123455666677777777777777777776654 11 22345666667
Q ss_pred HHHHhcCCHHHHHHHHHhccC-------C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC------CCCC-CHHHH
Q 010496 258 DLYSRCGCIEFARQVFQRMHK-------R----TLVSWNSIIVGFAVNGFVGEALEYFNSMQKE------GFKP-DGVSF 319 (509)
Q Consensus 258 ~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~------g~~p-~~~~~ 319 (509)
.+|...|++++|.+.|+++.+ + ...++..+...+...|++++|+..++++... +..| ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 777777777777776665542 1 1234555555666666666666666655543 1122 12344
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhH
Q 010496 320 TGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
..+..++...|++++|...++++.
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555555556666666666665554
No 87
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.21 E-value=3.4e-10 Score=102.95 Aligned_cols=215 Identities=11% Similarity=-0.026 Sum_probs=104.7
Q ss_pred HHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-HhHHHHHHHHHHccCCHHHHHHHHH
Q 010496 165 IESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQIS----GVEPD-YVTIISVLNACANVGTLGIGLWIHR 239 (509)
Q Consensus 165 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~ 239 (509)
+++|.+.|+. ....|...|++++|.+.|.+.... |-.++ ..+|..+..+|...|++++|...++
T Consensus 33 ~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 101 (292)
T 1qqe_A 33 FEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLE 101 (292)
T ss_dssp HHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6666665543 355666777777777777666442 11111 3455556666666666666666666
Q ss_pred HHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhC-CChHHHHHHHHHHHHCCCC-CC--
Q 010496 240 YVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVN-GFVGEALEYFNSMQKEGFK-PD-- 315 (509)
Q Consensus 240 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~m~~~g~~-p~-- 315 (509)
+.++.. ...|+...+ ..+++.+...|... |++++|+..|++.++.... .+
T Consensus 102 ~Al~l~---------------~~~g~~~~~-----------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~ 155 (292)
T 1qqe_A 102 NAIQIF---------------THRGQFRRG-----------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVA 155 (292)
T ss_dssp HHHHHH---------------HHTTCHHHH-----------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHH---------------HHcCCHHHH-----------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChH
Confidence 555421 001111110 12344445555553 5555555555555442100 00
Q ss_pred --HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH--
Q 010496 316 --GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRI-----EHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEV-- 385 (509)
Q Consensus 316 --~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~-- 385 (509)
..++..+...+.+.|++++|+..|+++.+...-.+.. ..|..+..++...|++++|...+++. .+.|+..
T Consensus 156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 2345555556666666666666666665321111111 13455555666666666666666654 3333311
Q ss_pred ----HHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCC
Q 010496 386 ----VLGSLLAACR--TKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 386 ----~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~ 416 (509)
.+..++.++. ..+++++|+..|+++...+|.
T Consensus 236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 2333344443 334566666666655555443
No 88
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.18 E-value=1.7e-09 Score=96.56 Aligned_cols=208 Identities=8% Similarity=-0.075 Sum_probs=138.6
Q ss_pred CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---C---hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC-CCC-HHH
Q 010496 247 KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---T---LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGF-KPD-GVS 318 (509)
Q Consensus 247 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~-~~~ 318 (509)
+.+...+..+...+.+.|++++|...|+++.+. + ...+..+..++...|++++|+..|++.++... .|. ...
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 345666777777788888888888888877632 2 45667777777888888888888888777522 112 345
Q ss_pred HHHHHHHHhc--------cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH
Q 010496 319 FTGALTACSH--------AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSL 390 (509)
Q Consensus 319 ~~~li~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l 390 (509)
+..+..++.. .|++++|+..|+++.+...- +......+.......+.. ...+..+
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~--~~~~~~a~~~~~~~~~~~---------------~~~~~~l 154 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN--HELVDDATQKIRELRAKL---------------ARKQYEA 154 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT--CTTHHHHHHHHHHHHHHH---------------HHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC--chhHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 5566666666 77788888888877753321 222222211111000000 1124667
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHHc----------CCchHHHHHHHHHHhCCCccCCcccE
Q 010496 391 LAACRTKGDIILAERLMKYLVDLDPGVD---SNYVLLANMYAAV----------GKWDGAGKIRRTMKGRGIQKKPGLSS 457 (509)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~~~~~~~~~~ 457 (509)
...+...|++++|+..|+++++..|+++ ..+..++.+|... |++++|...|+++.+...
T Consensus 155 a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-------- 226 (261)
T 3qky_A 155 ARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP-------- 226 (261)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT--------
T ss_pred HHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC--------
Confidence 7889999999999999999999999854 4788999999877 899999999999987531
Q ss_pred EEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHc
Q 010496 458 IEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLC 494 (509)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~ 494 (509)
.++........+..+...+.+.
T Consensus 227 ---------------~~~~~~~a~~~l~~~~~~~~~~ 248 (261)
T 3qky_A 227 ---------------DSPLLRTAEELYTRARQRLTEL 248 (261)
T ss_dssp ---------------TCTHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CChHHHHHHHHHHHHHHHHHHh
Confidence 1445556666666666665543
No 89
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.18 E-value=1.1e-09 Score=98.64 Aligned_cols=130 Identities=15% Similarity=0.097 Sum_probs=91.0
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHc------CCCC-CHhHHHHHHHHHHccCCHHHHHHHHHHHHHc------C-
Q 010496 180 AISWTALLNGFVKRGYFEEALECFREMQIS------GVEP-DYVTIISVLNACANVGTLGIGLWIHRYVLKQ------D- 245 (509)
Q Consensus 180 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~- 245 (509)
..++..+...|...|++++|+..++++... +-.| ...++..+..++...|++++|...++++++. .
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 122 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF 122 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence 556777778888888888888888777653 1122 3456677777788888888888888777654 1
Q ss_pred CCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC--------C---hhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010496 246 FKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR--------T---LVSWNSIIVGFAVNGFVGEALEYFNSMQK 309 (509)
Q Consensus 246 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~---~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 309 (509)
.+....++..+..+|...|++++|...|+++.+. + ..++..+...+...|++++|...++++.+
T Consensus 123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1334566777788888888888888877766421 2 34567777778888888888888877765
No 90
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.16 E-value=3.8e-09 Score=94.27 Aligned_cols=239 Identities=11% Similarity=0.047 Sum_probs=146.4
Q ss_pred HHhCCCHHHHHHHHhcCCCCC-HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHH
Q 010496 159 YMRRGDIESAVRMFDEMPVRD-AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWI 237 (509)
Q Consensus 159 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~ 237 (509)
..-.|.+..++.-...+...+ ...-.-+.++|...|++.... .-.|....+..+...+ ..+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~~-~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQFL-DTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHHH-TTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHHh-ccc----HHHH
Confidence 445788888877666654433 223334557777777776421 1233333444433333 222 5666
Q ss_pred HHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC-----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCC
Q 010496 238 HRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR-----TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGF 312 (509)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~ 312 (509)
+++.++.+ +++..++..+..++...|++++|++++.+.... +...+..++..+.+.|+.+.|.+.+++|.+.
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~-- 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA-- 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence 77666655 445555567778888888888888888876432 3456667777788888888888888888764
Q ss_pred CC-----CHHHHHHHHHHH--hccC--CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CC--
Q 010496 313 KP-----DGVSFTGALTAC--SHAG--LIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PM-- 380 (509)
Q Consensus 313 ~p-----~~~~~~~li~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-- 380 (509)
.| +..+...+..++ ...| ++..|..+|+++.+. .|+......+..++.+.|++++|.+.++.+ ..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 55 345555555552 2223 778888888887632 244222233344677778888888777654 21
Q ss_pred --------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010496 381 --------KP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 381 --------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 419 (509)
.| +..++..++......|+ +|.++++++.+..|+++.
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 24 44566566655555666 777888888888777653
No 91
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.14 E-value=8.1e-09 Score=92.16 Aligned_cols=241 Identities=10% Similarity=0.058 Sum_probs=141.8
Q ss_pred HhcCCchHHHHHHHhcCCCChH-HHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 010496 129 AKFGRMDLATVVFDAMRVKSSF-TWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQ 207 (509)
Q Consensus 129 ~~~g~~~~A~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~ 207 (509)
.-.|++..++.-...+...+.. .-..+..+|...|+++.. ....+....+..+...+ ..+ |+..|++..
T Consensus 24 fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~-----~~~~~~~~a~~~la~~~-~~~----a~~~l~~l~ 93 (310)
T 3mv2_B 24 YYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ-----DPTSKLGKVLDLYVQFL-DTK----NIEELENLL 93 (310)
T ss_dssp HTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC-----CSSSTTHHHHHHHHHHH-TTT----CCHHHHHTT
T ss_pred HHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC-----CCCCHHHHHHHHHHHHh-ccc----HHHHHHHHH
Confidence 3467777777765555433222 222344666666665531 11222333333333332 222 667777776
Q ss_pred HcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCC------
Q 010496 208 ISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDF-KDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRT------ 280 (509)
Q Consensus 208 ~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------ 280 (509)
..+ .++..++..+..++...|++++|++++.+.+..+- .-+...+..++.++.+.|+.+.|.+.+++|.+.+
T Consensus 94 ~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~ 172 (310)
T 3mv2_B 94 KDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSG 172 (310)
T ss_dssp TTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHH
T ss_pred hcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccccc
Confidence 654 45555556777777778888888888887766652 2456677777888888888888888887776332
Q ss_pred -hhhHHHHHHHH--Hh--CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc----C----
Q 010496 281 -LVSWNSIIVGF--AV--NGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIY----R---- 347 (509)
Q Consensus 281 -~~~~~~l~~~~--~~--~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~----~---- 347 (509)
..+...++.++ .. .+++.+|..+|+++... .|+..+-..++.++.+.|++++|...++.+.+.. +
T Consensus 173 ~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~ 250 (310)
T 3mv2_B 173 DNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENA 250 (310)
T ss_dssp HHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHH
T ss_pred chHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccC
Confidence 34444455442 22 33788888888887654 4553333444447777888888888887665321 0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH
Q 010496 348 VSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNE 384 (509)
Q Consensus 348 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~ 384 (509)
-+.+..+...+|......|+ +|.++++++ ...|+.
T Consensus 251 ~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~h 286 (310)
T 3mv2_B 251 VLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEH 286 (310)
T ss_dssp HSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCC
Confidence 12345566455555555565 667777776 345543
No 92
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.12 E-value=2.3e-09 Score=95.66 Aligned_cols=202 Identities=13% Similarity=0.063 Sum_probs=145.8
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCc---HhHHHHHHHHHHhcCCHHHHHHHHHhccC--C-C---hhh
Q 010496 213 PDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDN---VKVCNTLIDLYSRCGCIEFARQVFQRMHK--R-T---LVS 283 (509)
Q Consensus 213 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~---~~~ 283 (509)
.+...+..+...+.+.|++++|...|+++++.. |.+ ..++..+..+|.+.|++++|...|+++.+ | + ...
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 356677788888999999999999999999875 444 67889999999999999999999999874 2 2 346
Q ss_pred HHHHHHHHHh--------CCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHH
Q 010496 284 WNSIIVGFAV--------NGFVGEALEYFNSMQKEGFKPDG-VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEH 354 (509)
Q Consensus 284 ~~~l~~~~~~--------~~~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 354 (509)
+..+..++.. .|++++|+..|+++++. .|+. .....+ ..+..+... ....
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7778888888 99999999999999986 3432 221111 111111100 0122
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCCc
Q 010496 355 YGCIVDLYSRAGRLEDALNVVENM-PMKPN----EVVLGSLLAACRTK----------GDIILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~ 419 (509)
+..+...|.+.|++++|+..|+++ ...|+ ...+..+..++... |++++|...++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 556777888888999888888876 33343 34677777777765 8999999999999999998764
Q ss_pred h---HHHHHHHHHHcCCchH
Q 010496 420 N---YVLLANMYAAVGKWDG 436 (509)
Q Consensus 420 ~---~~~l~~~~~~~g~~~~ 436 (509)
. ...+..++.+.+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 3 4445555555444443
No 93
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.11 E-value=6.4e-09 Score=90.48 Aligned_cols=186 Identities=11% Similarity=0.014 Sum_probs=122.7
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhccC--CC----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCC-CCH-HHHH
Q 010496 249 NVKVCNTLIDLYSRCGCIEFARQVFQRMHK--RT----LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFK-PDG-VSFT 320 (509)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~-p~~-~~~~ 320 (509)
+...+..+...+.+.|++++|...|+++.+ |+ ...+..+..++.+.|++++|+..|+++++.... +.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344566677788888888888888888763 32 246777788888888888888888888875322 111 2344
Q ss_pred HHHHHHhc------------------cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 010496 321 GALTACSH------------------AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKP 382 (509)
Q Consensus 321 ~li~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p 382 (509)
.+..++.. .|++++|...|+++.+.. +-+...+........ .....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~----~~~~~---------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVF----LKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHH----HHHHH----------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHH----HHHHH----------
Confidence 44444443 356666666666666322 112222211111000 00000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC---chHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 010496 383 NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD---SNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQK 451 (509)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 451 (509)
......+...+...|++++|...|+++++..|+++ .++..++.+|.+.|++++|.+.++.+...+...
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 01113456778899999999999999999999865 568999999999999999999999998876443
No 94
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=2.9e-09 Score=83.87 Aligned_cols=126 Identities=17% Similarity=0.206 Sum_probs=76.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc
Q 010496 320 TGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PM-KPNEVVLGSLLAACRTK 397 (509)
Q Consensus 320 ~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~ 397 (509)
..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|..+++++ .. ..+...+..+...+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHh
Confidence 33444455555555555555555421 1223444555555555555555555555554 11 22445566666677777
Q ss_pred CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 398 GDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 398 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
|++++|.+.++++.+..|.+...+..++.++.+.|++++|.+.++++.+.
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 77777777777777777766667777777777777777777777776653
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.06 E-value=6e-10 Score=113.68 Aligned_cols=167 Identities=9% Similarity=-0.049 Sum_probs=82.1
Q ss_pred HhcCCHHHHHHHHHhcc-----------CCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 010496 261 SRCGCIEFARQVFQRMH-----------KRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHA 329 (509)
Q Consensus 261 ~~~g~~~~a~~~~~~~~-----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 329 (509)
...|++++|++.|+++. ..+...+..+..++...|++++|+..|+++.+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 44455555555555543 1233445555555555555555555555555431 11334444455555555
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 010496 330 GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLM 407 (509)
Q Consensus 330 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~ 407 (509)
|++++|+..|+++.+.. +.+...|..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555555211 1234445555555555555555 5555443 2233 3345555555555555555555555
Q ss_pred HHHHhcCCCCCchHHHHHHHHHHc
Q 010496 408 KYLVDLDPGVDSNYVLLANMYAAV 431 (509)
Q Consensus 408 ~~~~~~~~~~~~~~~~l~~~~~~~ 431 (509)
+++++.+|.+..++..++.++...
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~ 581 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSG 581 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC--
T ss_pred HhhcccCcccHHHHHHHHHHHHcc
Confidence 555555555545555555555443
No 96
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.04 E-value=2.4e-10 Score=92.38 Aligned_cols=141 Identities=9% Similarity=0.015 Sum_probs=97.5
Q ss_pred HHHHhCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC
Q 010496 289 VGFAVNGFVGEALEYFNSMQKEGFKPD-GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGR 367 (509)
Q Consensus 289 ~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 367 (509)
..+...|++++|+..+++.... .|+ ...+..+...|.+.|++++|+..|+++.+. .+-+...|..+..+|.+.|+
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCc
Confidence 3444556677777777766543 232 234455667777777888888777777742 12356777777778888888
Q ss_pred hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhcCCCCCchHHHHHHHHHHcCC
Q 010496 368 LEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERL-MKYLVDLDPGVDSNYVLLANMYAAVGK 433 (509)
Q Consensus 368 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 433 (509)
+++|+..|++. .+.| +...+..+...+.+.|++++|.+. ++++++..|.++.+|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 88888877775 4555 466788888888888887766554 588888888888888888888777764
No 97
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.04 E-value=1.6e-08 Score=79.49 Aligned_cols=126 Identities=20% Similarity=0.298 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYS 261 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (509)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++.+.+ +.+...+..+..++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45556666666677777777776666543 2345555566666666666666666666666554 344555555555555
Q ss_pred hcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHH
Q 010496 262 RCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQK 309 (509)
Q Consensus 262 ~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~ 309 (509)
..|++++|.+.++++.+ .+...+..+...+...|++++|...++++..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55666555555555431 2334444455555555555555555555444
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.03 E-value=9.9e-09 Score=92.89 Aligned_cols=176 Identities=11% Similarity=-0.017 Sum_probs=134.0
Q ss_pred HHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc
Q 010496 267 EFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIY 346 (509)
Q Consensus 267 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~ 346 (509)
+.....+......+...+..+...+...|++++|+..|++..... +-+...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~- 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ- 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence 344444555444455666777778888888888888888888762 235667778888888999999999999888732
Q ss_pred CCCCCHHHH-HHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchH
Q 010496 347 RVSPRIEHY-GCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV--DSNY 421 (509)
Q Consensus 347 ~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~ 421 (509)
.|+.... ......+.+.++.++|...+++. ...| +...+..+...+...|++++|...+.++++.+|.+ ..++
T Consensus 181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~ 258 (287)
T 3qou_A 181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR 258 (287)
T ss_dssp --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence 3443322 22333466777788888888776 4445 57788899999999999999999999999999986 7789
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 422 VLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 422 ~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
..++.+|...|+.++|...+++...
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 9999999999999999999887643
No 99
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.03 E-value=2.6e-08 Score=85.65 Aligned_cols=161 Identities=9% Similarity=-0.054 Sum_probs=113.7
Q ss_pred ChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----CHHHHHHHHHHhHHhcCCCCCHHHH
Q 010496 280 TLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAG----LIEDGLRYFDIMKKIYRVSPRIEHY 355 (509)
Q Consensus 280 ~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 355 (509)
++..+..+...|...+++++|+..|++..+.| +...+..|...|.. + ++++|...|++..+ . -+...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~-~---g~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE-A---GSKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH-T---TCHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH-C---CCHHHH
Confidence 45555566666666666677777777666654 44555556666665 5 77777777777763 2 245566
Q ss_pred HHHHHHHHh----cCChHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHH
Q 010496 356 GCIVDLYSR----AGRLEDALNVVENM-PMKPN---EVVLGSLLAACRT----KGDIILAERLMKYLVDLDPGVDSNYVL 423 (509)
Q Consensus 356 ~~li~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 423 (509)
..|...|.. .+++++|+++|++. ...|. ...+..|...|.. .+++++|...|+++.+. +.++..+..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 677777766 67888888888776 33442 6677778888877 77899999999998887 556668888
Q ss_pred HHHHHHHc-C-----CchHHHHHHHHHHhCCC
Q 010496 424 LANMYAAV-G-----KWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 424 l~~~~~~~-g-----~~~~A~~~~~~m~~~~~ 449 (509)
|+.+|... | ++++|.+.|++..+.|.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 88888764 3 78899999988888764
No 100
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.02 E-value=1.7e-08 Score=86.60 Aligned_cols=23 Identities=17% Similarity=0.280 Sum_probs=12.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 010496 186 LLNGFVKRGYFEEALECFREMQI 208 (509)
Q Consensus 186 li~~~~~~~~~~~A~~~~~~m~~ 208 (509)
....+...|++++|+..|++..+
T Consensus 10 ~g~~~~~~g~~~~A~~~~~~al~ 32 (208)
T 3urz_A 10 KVSAAIEAGQNGQAVSYFRQTIA 32 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH
Confidence 33445555566666666655555
No 101
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.00 E-value=2.7e-08 Score=101.47 Aligned_cols=189 Identities=10% Similarity=-0.022 Sum_probs=148.8
Q ss_pred HccCCHHHHHHHHHHHH--------HcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhC
Q 010496 226 ANVGTLGIGLWIHRYVL--------KQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVN 294 (509)
Q Consensus 226 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~ 294 (509)
...|++++|.+.+++++ +.. +.+...+..+..+|...|++++|.+.|+++.+ .+...|..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78899999999999998 443 66778899999999999999999999998873 4678899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 010496 295 GFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNV 374 (509)
Q Consensus 295 ~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 374 (509)
|++++|+..|++.++.. +-+...+..+..++.+.|++++ +..|+++.+. .+.+...|..+..+|.+.|++++|++.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999863 2256778888999999999999 9999999852 234678899999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCCc
Q 010496 375 VENM-PMKPN-EVVLGSLLAACRTKGD-----IILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 375 ~~~~-~~~p~-~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~ 419 (509)
|+++ ...|+ ...+..+..++...++ .+...+..+......+.++.
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 9997 67786 4577777777766554 23333444444444444443
No 102
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.99 E-value=1.9e-08 Score=86.17 Aligned_cols=186 Identities=10% Similarity=-0.022 Sum_probs=115.6
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChH
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFE 197 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 197 (509)
+..+......+...|++++|+..|++....++........ ...... ........+.+..+|.+.|+++
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~--~~~~~~----------~~~~~~~~~~lg~~~~~~g~~~ 71 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYW--TNVDKN----------SEISSKLATELALAYKKNRNYD 71 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHH--HHSCTT----------SHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHH--hhhcch----------hhhhHHHHHHHHHHHHHCCCHH
Confidence 3344445556667777777777777665433321111110 000000 0002223344788888899999
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC--HHHHHHHHHh
Q 010496 198 EALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGC--IEFARQVFQR 275 (509)
Q Consensus 198 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~ 275 (509)
+|+..|++..+.. +-+...+..+..++...|++++|...|+++++.. |.+..++..+..+|...|+ ...+...++.
T Consensus 72 ~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~ 149 (208)
T 3urz_A 72 KAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKK 149 (208)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999998888863 3367778888888888899999999998888876 6677888888888766553 4455666666
Q ss_pred ccCCChh--hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHH
Q 010496 276 MHKRTLV--SWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSF 319 (509)
Q Consensus 276 ~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~ 319 (509)
...++.. .+.....++...|++++|+..|++.++. .|+....
T Consensus 150 ~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~ 193 (208)
T 3urz_A 150 LSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQ 193 (208)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHH
T ss_pred HhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHH
Confidence 6655543 2333445555667777777777777764 5665433
No 103
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.99 E-value=1.9e-08 Score=92.03 Aligned_cols=220 Identities=11% Similarity=0.051 Sum_probs=146.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHH
Q 010496 193 RGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQV 272 (509)
Q Consensus 193 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 272 (509)
.|++++|.+++++..+.. +.. .+...++++.|...|.++ +..|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 456777888777776531 111 011146667776666554 3456677777777777
Q ss_pred HHhccCC-----C----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHhccCCHHHHHHH
Q 010496 273 FQRMHKR-----T----LVSWNSIIVGFAVNGFVGEALEYFNSMQKEG---FKPD--GVSFTGALTACSHAGLIEDGLRY 338 (509)
Q Consensus 273 ~~~~~~~-----~----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g---~~p~--~~~~~~li~~~~~~~~~~~a~~~ 338 (509)
|.+..+- + ..+|+.+...|...|++++|+..|++.++.- -.+. ..++..+...|.. |++++|+..
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 7665421 1 2467777888888888888888888766531 1122 3467777888888 999999999
Q ss_pred HHHhHHhcCCCC----CHHHHHHHHHHHHhcCChHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 010496 339 FDIMKKIYRVSP----RIEHYGCIVDLYSRAGRLEDALNVVENM-PM---KPN----EVVLGSLLAACRTKGDIILAERL 406 (509)
Q Consensus 339 ~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~g~~~~a~~~ 406 (509)
|++..+...-.. ...++..+...|.+.|++++|+..+++. .+ .++ ...+..++.++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998874321111 1457888899999999999999999876 11 112 22566677778888999999999
Q ss_pred HHHHHhcCCCCCch-----HHHHHHHHHHcCCchHHHHH
Q 010496 407 MKYLVDLDPGVDSN-----YVLLANMYAAVGKWDGAGKI 440 (509)
Q Consensus 407 ~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~A~~~ 440 (509)
+++++ ..|..... ...++.++ ..|+.+.+.++
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 99999 88874332 34445544 56776666553
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.99 E-value=9.7e-10 Score=88.82 Aligned_cols=123 Identities=11% Similarity=-0.010 Sum_probs=102.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 010496 322 ALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKG 398 (509)
Q Consensus 322 li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g 398 (509)
|...+...|++++|+..++.... ..| +...+..+...|.+.|++++|++.|++. .+.| +..+|..+..++...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44556677899999999988873 334 3556677899999999999999999987 5566 5779999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHH-HHHHHhC
Q 010496 399 DIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKI-RRTMKGR 447 (509)
Q Consensus 399 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~~ 447 (509)
++++|...|+++++.+|.++.++..++.+|.+.|++++|.+. +++..+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999887765 5777664
No 105
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.98 E-value=1.9e-06 Score=83.97 Aligned_cols=349 Identities=9% Similarity=-0.075 Sum_probs=180.6
Q ss_pred chHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHh-CCCCCchHHHHHHH
Q 010496 47 QWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKL-GLDRNNVMVGTALL 125 (509)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~ 125 (509)
.|...+..+=. |+++.+..+|++.... .|+...|..-+.-..+.. ...+....+|+..+.. |..+.+..+|...+
T Consensus 17 vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~-~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 17 IMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVS-QKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC-----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhC-chHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 45555555544 8899999999999984 578888887777655441 1335567777777665 66676688888888
Q ss_pred HHHH----hcCCchHHHHHHHhcCC-C--C-hHHHHHHHHHHHh-------------CCCHHHHHHHHhcCCC----CCH
Q 010496 126 DMYA----KFGRMDLATVVFDAMRV-K--S-SFTWNAMIDGYMR-------------RGDIESAVRMFDEMPV----RDA 180 (509)
Q Consensus 126 ~~~~----~~g~~~~A~~~~~~~~~-~--~-~~~~~~l~~~~~~-------------~~~~~~A~~~~~~~~~----~~~ 180 (509)
..+. ..|+.+.+.++|++... | + ...|......-.. .+.+..|..+++.+.. .+.
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~ 172 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSV 172 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSH
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccH
Confidence 7654 34678899999998854 2 1 1122222111000 0112222222222111 123
Q ss_pred hHHHHHHHHHHHcC--C-----hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHH
Q 010496 181 ISWTALLNGFVKRG--Y-----FEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVC 253 (509)
Q Consensus 181 ~~~~~li~~~~~~~--~-----~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 253 (509)
..|...+..-...+ - .+.+..+|+++.... +.+...|...+..+.+.|+.+.|..++++.+.. |.+...+
T Consensus 173 ~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~ 249 (493)
T 2uy1_A 173 KNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLS 249 (493)
T ss_dssp HHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHH
T ss_pred HHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHH
Confidence 34444443322211 0 234566777776642 445666666677777777888888888887776 4443333
Q ss_pred HHHHHHHHhcCCHHHH-HHHHHhcc--C----------CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 010496 254 NTLIDLYSRCGCIEFA-RQVFQRMH--K----------RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFT 320 (509)
Q Consensus 254 ~~l~~~~~~~g~~~~a-~~~~~~~~--~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~ 320 (509)
.. |....+.++. ..+.+... . .....|...+....+.++.+.|..+|++. .. ...+...|.
T Consensus 250 ~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i 323 (493)
T 2uy1_A 250 LY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFI 323 (493)
T ss_dssp HH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHH
T ss_pred HH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHH
Confidence 22 2111111111 11111110 0 01123444444444555666666666666 21 112223332
Q ss_pred HHHHHHhc-cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 010496 321 GALTACSH-AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGD 399 (509)
Q Consensus 321 ~li~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 399 (509)
.....-.. .++.+.|..+|+...+..+ .+...+...++...+.|+.+.|..+|+++. .....|...+..-...|+
T Consensus 324 ~~A~lE~~~~~d~~~ar~ife~al~~~~--~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G~ 399 (493)
T 2uy1_A 324 YCAFIEYYATGSRATPYNIFSSGLLKHP--DSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVGS 399 (493)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCCC
Confidence 21111111 2246666666666664322 223334445555556666666666666652 234555555555555566
Q ss_pred HHHHHHHHHHHHh
Q 010496 400 IILAERLMKYLVD 412 (509)
Q Consensus 400 ~~~a~~~~~~~~~ 412 (509)
.+.+..+++++..
T Consensus 400 ~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 400 MELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665543
No 106
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.97 E-value=9e-07 Score=79.78 Aligned_cols=228 Identities=11% Similarity=0.044 Sum_probs=161.8
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH----Hhc---
Q 010496 193 RGYFEEALECFREMQISGVEPDYVTIISVLNACANVG--TLGIGLWIHRYVLKQDFKDNVKVCNTLIDLY----SRC--- 263 (509)
Q Consensus 193 ~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 263 (509)
....++|+++++.++..+ +-+...|+.-..++...+ ++++++++++.++... |.+..+|+.-..++ ...
T Consensus 46 ~e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 46 EEYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp TCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhcccc
Confidence 334468888888888853 224555677677777777 8899999998888876 66666666655555 445
Q ss_pred CCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC------H
Q 010496 264 GCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVG--EALEYFNSMQKEGFKPDGVSFTGALTACSHAGL------I 332 (509)
Q Consensus 264 g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~------~ 332 (509)
+++++++++++++.+ ++..+|+.-.-.+.+.|.++ ++++.++++++.... |...|+.-...+.+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence 678888888888764 35567777777777788877 888888888886443 66666655555666665 7
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 010496 333 EDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLED-ALNVVENM-PM----KPNEVVLGSLLAACRTKGDIILAERL 406 (509)
Q Consensus 333 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~g~~~~a~~~ 406 (509)
+++++.++++... .+-|...|+.+...+.+.|+... +.++..++ .. ..+...+..++..+.+.|+.++|.++
T Consensus 203 ~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 203 DEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 8888888888742 24467788888878878777544 45566665 22 23677888888888888888888888
Q ss_pred HHHHHh-cCCCCCchHHHHH
Q 010496 407 MKYLVD-LDPGVDSNYVLLA 425 (509)
Q Consensus 407 ~~~~~~-~~~~~~~~~~~l~ 425 (509)
++.+.+ .+|.....|...+
T Consensus 281 ~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 281 YDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHhccChHHHHHHHHHH
Confidence 888886 6777655555444
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.95 E-value=1.7e-07 Score=84.59 Aligned_cols=214 Identities=13% Similarity=0.084 Sum_probs=171.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC--CHHHHHHHHHhccC---CChhhHHHHHHHH----HhC---CC
Q 010496 229 GTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG--CIEFARQVFQRMHK---RTLVSWNSIIVGF----AVN---GF 296 (509)
Q Consensus 229 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~---~~~~~~~~l~~~~----~~~---~~ 296 (509)
...++|++++..++..+ |-+..+|+.-..++...| ++++++++++.+.. .+..+|+.-...+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCC
Confidence 34478999999999987 777888998888898888 99999999999874 3556676655555 555 78
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC------h
Q 010496 297 VGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIE--DGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGR------L 368 (509)
Q Consensus 297 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~------~ 368 (509)
+++++.+++++.+.. +-+...|..-.-.+.+.|.++ +++.+++++.+. -+-+...|+.-...+.+.++ +
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhH
Confidence 999999999999874 336777777666777788888 999999999953 24577788777777777776 8
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcC---CCCCchHHHHHHHHHHcCCchHHHHHHH
Q 010496 369 EDALNVVENM-PMKP-NEVVLGSLLAACRTKGD-IILAERLMKYLVDLD---PGVDSNYVLLANMYAAVGKWDGAGKIRR 442 (509)
Q Consensus 369 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 442 (509)
+++++.++++ ...| |...|+.+...+.+.|+ .+.+..+.+++.+.+ |.++.++..++.+|.+.|+.++|.++++
T Consensus 203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 8899998876 4455 77899998888888887 444667888877766 6677889999999999999999999999
Q ss_pred HHHh
Q 010496 443 TMKG 446 (509)
Q Consensus 443 ~m~~ 446 (509)
.+.+
T Consensus 283 ~l~~ 286 (306)
T 3dra_A 283 LLKS 286 (306)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
No 108
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.94 E-value=2e-08 Score=83.49 Aligned_cols=156 Identities=13% Similarity=0.090 Sum_probs=93.9
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH-HHhc
Q 010496 287 IIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDL-YSRA 365 (509)
Q Consensus 287 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~ 365 (509)
+...+...|++++|+..|++..+.. +-+...+..+..++...|++++|+..++++.+.. |+...+..+... +...
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHHHHHhh
Confidence 3444445555555555555544421 1133444455555555555555555555554221 122222111111 1111
Q ss_pred CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--CchHHHHHHHHHHcCCchHHHHHH
Q 010496 366 GRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV--DSNYVLLANMYAAVGKWDGAGKIR 441 (509)
Q Consensus 366 g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~ 441 (509)
+...+|...+++. ...| +...+..+...+...|++++|...++++++..|.. +..+..++.++...|+.++|...|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 2222345555554 3445 46788888888999999999999999999998874 458889999999999999999999
Q ss_pred HHHHh
Q 010496 442 RTMKG 446 (509)
Q Consensus 442 ~~m~~ 446 (509)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.93 E-value=5.9e-08 Score=87.78 Aligned_cols=162 Identities=8% Similarity=-0.054 Sum_probs=106.4
Q ss_pred CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC--CChhhH-HHHHHH
Q 010496 214 DYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK--RTLVSW-NSIIVG 290 (509)
Q Consensus 214 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~-~~l~~~ 290 (509)
+...+..+...+...|++++|...|+++++.. |.+...+..+..++.+.|++++|...++++.. |+.... ......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~ 194 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE 194 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence 44555666667777777777777777777765 56677777778888888888888888877764 332222 222223
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 010496 291 FAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLED 370 (509)
Q Consensus 291 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (509)
+...++.++|+..+++..... +.+...+..+...+...|++++|...|.++.+...-..+...+..++..|...|+.++
T Consensus 195 l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 195 LLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 555666777777777777652 3355666677777777788888887777777432222225566777777777777777
Q ss_pred HHHHHHh
Q 010496 371 ALNVVEN 377 (509)
Q Consensus 371 A~~~~~~ 377 (509)
|...+++
T Consensus 274 a~~~~r~ 280 (287)
T 3qou_A 274 LASXYRR 280 (287)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7666654
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.93 E-value=1.4e-08 Score=101.66 Aligned_cols=160 Identities=9% Similarity=-0.036 Sum_probs=125.0
Q ss_pred cCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHH
Q 010496 263 CGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYF 339 (509)
Q Consensus 263 ~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~ 339 (509)
.|++++|.+.|+++.+ .+...|..+...+...|++++|++.|++..+.. +.+...+..+..++...|++++|...+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4788999999998874 356789999999999999999999999999863 335778888999999999999999999
Q ss_pred HHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 010496 340 DIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTK---GDIILAERLMKYLVDLD 414 (509)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~ 414 (509)
++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |++++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999853 2346788999999999999999999999887 4445 577888999999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 010496 415 PGVDSNYVLLA 425 (509)
Q Consensus 415 ~~~~~~~~~l~ 425 (509)
|.+...|..++
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888777766
No 111
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.92 E-value=7.8e-09 Score=94.68 Aligned_cols=197 Identities=10% Similarity=0.013 Sum_probs=149.8
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHH
Q 010496 227 NVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNS 306 (509)
Q Consensus 227 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 306 (509)
..|++++|.+++++..+.. +.. .+...++++.|...|.++ ...|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 3577889999999887653 211 011158899998887764 5678889999999999998
Q ss_pred HHHC----CCCC-CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CC--CHHHHHHHHHHHHhcCChHHHHHHHHh
Q 010496 307 MQKE----GFKP-DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRV--SP--RIEHYGCIVDLYSRAGRLEDALNVVEN 377 (509)
Q Consensus 307 m~~~----g~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~--~~~~~~~li~~~~~~g~~~~A~~~~~~ 377 (509)
..+. +-.+ -..+|..+..+|...|++++|+..+++..+...- .+ ...++..+...|.. |++++|++.+++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7753 1111 1347888888999999999999999988743211 12 14577888889988 999999999987
Q ss_pred C-CCCC---C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC------chHHHHHHHHHHcCCchHHHHHHHH
Q 010496 378 M-PMKP---N----EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD------SNYVLLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 378 ~-~~~p---~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~ 443 (509)
. .+.| + ..++..+...+...|++++|+..++++++..+.+. ..+..++.++...|++++|...|++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6 1111 1 45788889999999999999999999999765533 2567788888899999999999999
Q ss_pred HH
Q 010496 444 MK 445 (509)
Q Consensus 444 m~ 445 (509)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 87
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.90 E-value=1.1e-07 Score=81.78 Aligned_cols=156 Identities=12% Similarity=0.035 Sum_probs=105.7
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC----CHHHHHHHHHHHHHcCCCCcHhHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVG----TLGIGLWIHRYVLKQDFKDNVKVCN 254 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 254 (509)
++.++..+...|...+++++|+++|++..+.| +...+..+...|.. + ++++|..+|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 66677777777777777777777777777654 45566666666666 5 7777777777777654 456666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhccCCC-----hhhHHHHHHHHHh----CCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 010496 255 TLIDLYSR----CGCIEFARQVFQRMHKRT-----LVSWNSIIVGFAV----NGFVGEALEYFNSMQKEGFKPDGVSFTG 321 (509)
Q Consensus 255 ~l~~~~~~----~g~~~~a~~~~~~~~~~~-----~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ 321 (509)
.|..+|.. .+++++|++.|++..+.+ +..+..|...|.. .+++++|+..|++..+.+ .+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHH
Confidence 67777766 677777777777776543 4667777777776 667777777777777651 23334555
Q ss_pred HHHHHhcc-C-----CHHHHHHHHHHhH
Q 010496 322 ALTACSHA-G-----LIEDGLRYFDIMK 343 (509)
Q Consensus 322 li~~~~~~-~-----~~~~a~~~~~~~~ 343 (509)
|...|... | +.++|...|++..
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~ 195 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSC 195 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHH
Confidence 55555432 2 6777777777776
No 113
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.90 E-value=3.2e-08 Score=82.31 Aligned_cols=56 Identities=14% Similarity=0.073 Sum_probs=29.0
Q ss_pred HHHHHHHHHhcCCchHHHHHHHhcCC---CChHHHHHHHHHHHhCCCHHHHHHHHhcCC
Q 010496 121 GTALLDMYAKFGRMDLATVVFDAMRV---KSSFTWNAMIDGYMRRGDIESAVRMFDEMP 176 (509)
Q Consensus 121 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 176 (509)
+..+...+.+.|++++|+..|++... .+...+..+...+.+.|++++|...|+...
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~ 67 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIP 67 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhh
Confidence 34445555555555555555555542 134445555555555555555555555443
No 114
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.88 E-value=1.2e-08 Score=81.94 Aligned_cols=102 Identities=12% Similarity=-0.018 Sum_probs=89.0
Q ss_pred CCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 010496 347 RVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVL 423 (509)
Q Consensus 347 ~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 423 (509)
.+.| +...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..|+++++.+|+++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3445 3567778888889999999999999887 4555 57789999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 424 LANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 424 l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
++.+|.+.|++++|.+.|++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999998764
No 115
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.87 E-value=1.5e-07 Score=81.77 Aligned_cols=57 Identities=11% Similarity=0.039 Sum_probs=32.0
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC
Q 010496 322 ALTACSHAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDALNVVENM 378 (509)
Q Consensus 322 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~ 378 (509)
+...+.+.|++++|+..|+++.+...-.|. ...+..+..+|.+.|++++|.+.++.+
T Consensus 153 ~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l 210 (225)
T 2yhc_A 153 VAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 344556666666666666666643221111 244556666666666666666666654
No 116
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.85 E-value=6.1e-08 Score=97.04 Aligned_cols=147 Identities=11% Similarity=-0.070 Sum_probs=108.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHH
Q 010496 228 VGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYF 304 (509)
Q Consensus 228 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~ 304 (509)
.|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|++..+ .+...|..+..++...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999988875 66788899999999999999999999998764 35678888999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc---CChHHHHHHHHhC
Q 010496 305 NSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRA---GRLEDALNVVENM 378 (509)
Q Consensus 305 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~ 378 (509)
++..+.. +.+...+..+..++.+.|++++|...++++.+.. +.+...+..+...+... |++++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL--PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9998863 3356788888899999999999999999998532 34577888899999999 9999999999876
No 117
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.84 E-value=2.1e-07 Score=79.93 Aligned_cols=91 Identities=10% Similarity=-0.093 Sum_probs=56.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHH
Q 010496 153 NAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLG 232 (509)
Q Consensus 153 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~ 232 (509)
..+...+...|++++|...|+....++...+..+...+...|++++|++.|++..... +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3445555566666666666666655566666666666666666666666666666543 334555666666666666666
Q ss_pred HHHHHHHHHHHc
Q 010496 233 IGLWIHRYVLKQ 244 (509)
Q Consensus 233 ~a~~~~~~~~~~ 244 (509)
+|...++++.+.
T Consensus 89 ~A~~~~~~al~~ 100 (213)
T 1hh8_A 89 LAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 666666666654
No 118
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.84 E-value=6.6e-07 Score=81.13 Aligned_cols=160 Identities=8% Similarity=-0.060 Sum_probs=117.5
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCC-CCCHH----HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHH
Q 010496 287 IIVGFAVNGFVGEALEYFNSMQKEGF-KPDGV----SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR----IEHYGC 357 (509)
Q Consensus 287 l~~~~~~~~~~~~A~~~~~~m~~~g~-~p~~~----~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 357 (509)
.+..+...|++++|..++++...... .|+.. .+..+...+...|++++|+..++++.+...-.++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 35667788888888888888876421 22211 2334666677778899999999988842222223 336888
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-----C---CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHH
Q 010496 358 IVDLYSRAGRLEDALNVVENMP-----M---KPN-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV------DSNYV 422 (509)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~~~-----~---~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~ 422 (509)
+...|...|++++|+..++++- . .+. ..++..+...|...|++++|...++++++..+.. ..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 8889999999999988887761 1 111 2378888999999999999999999998865332 34689
Q ss_pred HHHHHHHHcCC-chHHHHHHHHHHh
Q 010496 423 LLANMYAAVGK-WDGAGKIRRTMKG 446 (509)
Q Consensus 423 ~l~~~~~~~g~-~~~A~~~~~~m~~ 446 (509)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 5999999988764
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.84 E-value=8.7e-08 Score=82.31 Aligned_cols=125 Identities=14% Similarity=0.012 Sum_probs=89.2
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 010496 319 FTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRT 396 (509)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~ 396 (509)
+..+...+...|++++|...++++. .|+...+..+...|.+.|++++|++.+++. ...| +...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 3344555666677777777776553 345666777777777777777777777665 2233 45677777778888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCC----------------chHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 397 KGDIILAERLMKYLVDLDPGVD----------------SNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 397 ~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
.|++++|.+.++++++..|.+. ..+..++.+|.+.|++++|.+.|++..+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888888777766 678888888888888888888888877654
No 120
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.83 E-value=2.7e-08 Score=80.00 Aligned_cols=97 Identities=16% Similarity=0.049 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 010496 351 RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMY 428 (509)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 428 (509)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...|+++++.+|.++..+..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4566777888888999999999999886 3445 6778888888999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 010496 429 AAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~~ 447 (509)
...|++++|.+.|++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988765
No 121
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.82 E-value=1.8e-07 Score=84.92 Aligned_cols=164 Identities=7% Similarity=-0.061 Sum_probs=117.9
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCC--CCC--HH
Q 010496 283 SWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDG-----VSFTGALTACSHAGLIEDGLRYFDIMKKIYRV--SPR--IE 353 (509)
Q Consensus 283 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~ 353 (509)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|+..+++..+.... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444566777888888888888877765322111 12334555667788999999998888732111 111 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CC
Q 010496 354 HYGCIVDLYSRAGRLEDALNVVENM----PMKPN-----EVVLGSLLAACRTKGDIILAERLMKYLVDLDPG------VD 418 (509)
Q Consensus 354 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~ 418 (509)
+|+.+...|...|++++|...++++ ...|+ ..++..+...|...|++++|...++++++..+. -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888999999999999888775 11222 258888899999999999999999998875432 13
Q ss_pred chHHHHHHHHHHcCCchHH-HHHHHHHHh
Q 010496 419 SNYVLLANMYAAVGKWDGA-GKIRRTMKG 446 (509)
Q Consensus 419 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 446 (509)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 4688999999999999999 777887654
No 122
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.80 E-value=5.9e-08 Score=75.47 Aligned_cols=93 Identities=15% Similarity=0.131 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 010496 354 HYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAV 431 (509)
Q Consensus 354 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 431 (509)
.+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++.+|.+..+|..++.+|...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 3444444455555555555555443 2223 3444555555555555555555555555555555555555555555555
Q ss_pred CCchHHHHHHHHHHh
Q 010496 432 GKWDGAGKIRRTMKG 446 (509)
Q Consensus 432 g~~~~A~~~~~~m~~ 446 (509)
|++++|++.|++..+
T Consensus 95 ~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 95 REWSKAQRAYEDALQ 109 (126)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555555555444
No 123
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.78 E-value=1.1e-07 Score=73.97 Aligned_cols=114 Identities=11% Similarity=0.026 Sum_probs=92.7
Q ss_pred CCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 010496 312 FKPDG-VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLG 388 (509)
Q Consensus 312 ~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 388 (509)
+.|+. ..+......+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..+++. .+.| +...|.
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~ 85 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI 85 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence 34443 45667778888899999999999988842 2346778888889999999999999998886 4445 577899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 010496 389 SLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANM 427 (509)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 427 (509)
.+..++...|++++|.+.|+++++.+|.+..++..|..+
T Consensus 86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 999999999999999999999999999998887777654
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.77 E-value=1.4e-07 Score=77.24 Aligned_cols=128 Identities=12% Similarity=0.033 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 010496 317 VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAAC 394 (509)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 394 (509)
..+..+...+...|++++|...+++..+. .+.+...+..+..++...|++++|...+++. ...| +...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34555666677778888888888877742 2335667777888888888888888888775 3334 567888888899
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH--HHHcCCchHHHHHHHHHHh
Q 010496 395 RTKGDIILAERLMKYLVDLDPGVDSNYVLLANM--YAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 395 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 446 (509)
...|++++|...++++++..|.+...+..+..+ +.+.|++++|++.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999999887777544444 7888999999999987654
No 125
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.72 E-value=1.5e-06 Score=84.69 Aligned_cols=356 Identities=11% Similarity=-0.015 Sum_probs=215.3
Q ss_pred cCC-ChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCC-c
Q 010496 57 RSG-RIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGR-M 134 (509)
Q Consensus 57 ~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~ 134 (509)
+.| ++..|..+|+++... -|. ++.+.+..+|+..+.. .|+ ...|..-+....+.++ .
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~----------------~~~e~~~~iferal~~--~ps-~~LW~~Y~~f~~~~~~~~ 64 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS----------------KDYRSLESLFGRCLKK--SYN-LDLWMLYIEYVRKVSQKK 64 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT----------------TCHHHHHHHHHHHSTT--CCC-HHHHHHHHHHHHHHC---
T ss_pred HcCcchHHHHHHHHHHHHH--CCC----------------CCHHHHHHHHHHHhcc--CCC-HHHHHHHHHHHHHhCchH
Confidence 346 377888888888762 344 6688899999988885 365 8899988888877764 4
Q ss_pred hHHHHHHHhcC------CCChHHHHHHHHHHH----hCCCHHHHHHHHhcCCC-C--CH-hHHHHHHHHHH---------
Q 010496 135 DLATVVFDAMR------VKSSFTWNAMIDGYM----RRGDIESAVRMFDEMPV-R--DA-ISWTALLNGFV--------- 191 (509)
Q Consensus 135 ~~A~~~~~~~~------~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~-~--~~-~~~~~li~~~~--------- 191 (509)
+....+|+... ..+...|...+..+. ..++.+.+..+|+.... | +. ..|......-.
T Consensus 65 ~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~ 144 (493)
T 2uy1_A 65 FKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKK 144 (493)
T ss_dssp -CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHH
Confidence 55667777654 236677877777654 24678889999987643 2 21 12221111100
Q ss_pred ----HcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHcc--CC-----HHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 010496 192 ----KRGYFEEALECFREMQISGVEPDYVTIISVLNACANV--GT-----LGIGLWIHRYVLKQDFKDNVKVCNTLIDLY 260 (509)
Q Consensus 192 ----~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (509)
..+.+..|..+++.+...--..+...|...+..-... +- .+.+..+|++++... +.+...|...+..+
T Consensus 145 ~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~ 223 (493)
T 2uy1_A 145 IVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYL 223 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 1122333444444443210001233454444433221 11 345778999988865 67788899999999
Q ss_pred HhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHhc
Q 010496 261 SRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEG---------FKP---DGVSFTGALTACSH 328 (509)
Q Consensus 261 ~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g---------~~p---~~~~~~~li~~~~~ 328 (509)
.+.|+.+.|..+|++.... +......+ .|......++. ++.+...- ..+ ....|...+....+
T Consensus 224 ~~~~~~~~ar~i~erAi~~-P~~~~l~~-~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r 298 (493)
T 2uy1_A 224 IGIGQKEKAKKVVERGIEM-SDGMFLSL-YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLK 298 (493)
T ss_dssp HHTTCHHHHHHHHHHHHHH-CCSSHHHH-HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhC-CCcHHHHH-HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHH
Confidence 9999999999999986533 22211111 22222111121 22222110 001 12345566666667
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc-CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 010496 329 AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRA-GRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAER 405 (509)
Q Consensus 329 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~ 405 (509)
.+..+.|..+|+++ +..+ .+...|...+..-... ++.+.|..+|+.. ..-| +...+...+......|+.+.|..
T Consensus 299 ~~~~~~AR~i~~~A-~~~~--~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~ 375 (493)
T 2uy1_A 299 KRGLELFRKLFIEL-GNEG--VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARA 375 (493)
T ss_dssp HHCHHHHHHHHHHH-TTSC--CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred cCCHHHHHHHHHHh-hCCC--CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 78899999999998 3322 3444554333333333 3699999999876 2123 34456667777788999999999
Q ss_pred HHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 406 LMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
+|+++ +.....|...+..-...|+.+.+.+++++..+
T Consensus 376 l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 376 LFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99997 23445688888888888999999999988874
No 126
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.71 E-value=2.4e-07 Score=72.47 Aligned_cols=117 Identities=15% Similarity=0.090 Sum_probs=85.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 010496 315 DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLA 392 (509)
Q Consensus 315 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 392 (509)
+...+..+...+...|++++|...++++.+ ..+.+...+..+...|...|++++|.+.+++. ...| +...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345566666677777777777777777763 22235666777777777777777777777665 3333 5667788888
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCC
Q 010496 393 ACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGK 433 (509)
Q Consensus 393 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 433 (509)
++...|++++|.+.++++++..|.+...+..++.++.+.|+
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 88888899999999999888888887888888888877654
No 127
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.71 E-value=1.3e-06 Score=79.21 Aligned_cols=61 Identities=7% Similarity=-0.111 Sum_probs=28.3
Q ss_pred hHHHHHHHHHhCCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHhccCC-HHHHHHHHHHhH
Q 010496 283 SWNSIIVGFAVNGFVGEALEYFNSMQKE----GFKPD-GVSFTGALTACSHAGL-IEDGLRYFDIMK 343 (509)
Q Consensus 283 ~~~~l~~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~~~-~~~a~~~~~~~~ 343 (509)
+|..+...|...|++++|+..+++.++. +..+. ..++..+..++.+.|+ +++|...++++.
T Consensus 198 ~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 3444444455555555555554444321 11111 3445555555555553 455555555544
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.71 E-value=2.5e-07 Score=81.48 Aligned_cols=192 Identities=11% Similarity=-0.056 Sum_probs=114.9
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCcHhHHHHH-------HHHHHhcCCHHHHHHHHHhccCC---------C----------
Q 010496 227 NVGTLGIGLWIHRYVLKQDFKDNVKVCNTL-------IDLYSRCGCIEFARQVFQRMHKR---------T---------- 280 (509)
Q Consensus 227 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~---------~---------- 280 (509)
..++...|.+.|.++.+.. |-....|..+ ..++.+.++..+++..+++...- +
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 4667777777777777765 5556666655 44454444445555554444321 1
Q ss_pred -----hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC--HH
Q 010496 281 -----LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR--IE 353 (509)
Q Consensus 281 -----~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~ 353 (509)
...+..+...+...|++++|.++|+.+... .|+......+...+.+.+++++|+..|+...+ .. .|. ..
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~~-d~~~~~~ 172 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-WP-DKFLAGA 172 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-CS-CHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-cC-CcccHHH
Confidence 112334555666777777777777766654 24333444444566777777777777775542 11 121 23
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHH
Q 010496 354 HYGCIVDLYSRAGRLEDALNVVENMP--MK-PN--EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLL 424 (509)
Q Consensus 354 ~~~~li~~~~~~g~~~~A~~~~~~~~--~~-p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 424 (509)
.+..+..++.+.|++++|++.|++.. .. |. .........++.+.|+.++|..+|+++...+|. +.++..|
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 56667777777777777777777662 11 43 235555666777788888888888888887776 4444444
No 129
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.70 E-value=2.7e-07 Score=71.84 Aligned_cols=118 Identities=13% Similarity=0.104 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 010496 316 GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAA 393 (509)
Q Consensus 316 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~ 393 (509)
...+..+...+...|+++.|...++++.+. .+.+...+..+...+...|++++|.+.+++. ...| +...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 445666667777788888888888887742 2335667777788888888888888888775 3334 46688888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCch
Q 010496 394 CRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWD 435 (509)
Q Consensus 394 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 435 (509)
+...|++++|...++++++..|.++..+..++.++.+.|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999988888999999998888753
No 130
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.70 E-value=2e-05 Score=71.86 Aligned_cols=230 Identities=12% Similarity=0.054 Sum_probs=151.6
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-C-
Q 010496 188 NGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVG-TLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRC-G- 264 (509)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g- 264 (509)
....+.+..++|+++++++...+ +-+...|+.--.++...| ++++++.+++.++... +.+..+|+.-..++... +
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 33444555678888888888853 334555666666666677 5888999999888876 67778888777777766 6
Q ss_pred CHHHHHHHHHhccCCCh---hhHHHHHHHHHhCCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC--
Q 010496 265 CIEFARQVFQRMHKRTL---VSWNSIIVGFAVNGFVG--------EALEYFNSMQKEGFKPDGVSFTGALTACSHAGL-- 331 (509)
Q Consensus 265 ~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~--------~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-- 331 (509)
++++++++++++.+.++ .+|+.-.-.+.+.|.++ ++++.++++++..+. |...|+.....+.+.+.
T Consensus 140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 78888899888886544 45555444555555555 888889988886433 66777777777777665
Q ss_pred -----HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCCh--------------------HHHHHHHHhC-CC-----
Q 010496 332 -----IEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRL--------------------EDALNVVENM-PM----- 380 (509)
Q Consensus 332 -----~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~~-~~----- 380 (509)
++++++.++++... .+-|...|+.+-..+.+.|+. ....++...+ ..
T Consensus 219 ~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPED 296 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSS
T ss_pred cchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccc
Confidence 67888888887742 244677777777667666654 3334444433 11
Q ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCCchHH
Q 010496 381 --KPNEVVLGSLLAACRTKGDIILAERLMKYLV-DLDPGVDSNYV 422 (509)
Q Consensus 381 --~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~ 422 (509)
.+....+..|+..|...|+.++|.++++.+. +.+|.....|.
T Consensus 297 ~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~ 341 (349)
T 3q7a_A 297 TPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWE 341 (349)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHH
Confidence 2456677777777777777777888777775 34554333333
No 131
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.70 E-value=3.7e-07 Score=70.38 Aligned_cols=115 Identities=17% Similarity=0.201 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 010496 316 GVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PM-KPNEVVLGSLLAA 393 (509)
Q Consensus 316 ~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~ 393 (509)
...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|..+++++ .. ..+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345666666777777777777777777742 2335666777777777788888888777765 22 2356677888888
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 010496 394 CRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVG 432 (509)
Q Consensus 394 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 432 (509)
+...|++++|...++++.+..|.++..+..++.++.+.|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888899999999999998888888778888877776544
No 132
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.70 E-value=4.3e-08 Score=88.34 Aligned_cols=50 Identities=4% Similarity=-0.203 Sum_probs=35.9
Q ss_pred cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc-CCchHHHHHHHHHHh
Q 010496 397 KGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAV-GKWDGAGKIRRTMKG 446 (509)
Q Consensus 397 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 446 (509)
.|++++|.+.++++++.+|.+......+...+.+. +.+++|.++|+++.+
T Consensus 148 ~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 148 AAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHHHHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 57778888888888887776655555666666655 667788888877765
No 133
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.70 E-value=2.9e-07 Score=73.29 Aligned_cols=97 Identities=16% Similarity=0.074 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 010496 351 RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMY 428 (509)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 428 (509)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...|+++++.+|.++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3455666777888889999999988876 4445 6778888888999999999999999999999999999999999999
Q ss_pred HHcCCchHHHHHHHHHHhC
Q 010496 429 AAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 429 ~~~g~~~~A~~~~~~m~~~ 447 (509)
...|++++|.+.|++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988764
No 134
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=8.8e-07 Score=80.31 Aligned_cols=163 Identities=8% Similarity=-0.079 Sum_probs=110.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHhccCC---Ch------hhHHHHHHHHHhCCChHHHHHHHHHHHHCCC---CCC--H
Q 010496 251 KVCNTLIDLYSRCGCIEFARQVFQRMHKR---TL------VSWNSIIVGFAVNGFVGEALEYFNSMQKEGF---KPD--G 316 (509)
Q Consensus 251 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~------~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~---~p~--~ 316 (509)
..+...+..+...|++++|.+.+.+..+. .. ..+..+...+...|++++|+..+++...... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455666777788888888877655421 11 2234455566777888888888888775321 122 3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHH---hcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHhC-C------CCC-C
Q 010496 317 VSFTGALTACSHAGLIEDGLRYFDIMKK---IYRVSPR--IEHYGCIVDLYSRAGRLEDALNVVENM-P------MKP-N 383 (509)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~~~~---~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~------~~p-~ 383 (509)
.+++.+...|...|++++|...++++.+ ..+..+. ..++..+...|.+.|++++|+..+++. . ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4677788888888888888888888763 2221111 257788888888888988888888765 1 111 1
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 010496 384 EVVLGSLLAACRTKGDIILA-ERLMKYLVDL 413 (509)
Q Consensus 384 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 413 (509)
..+|..+...+...|++++| ...+++++..
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 55788888888899999998 7778877653
No 135
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.67 E-value=2.7e-07 Score=71.71 Aligned_cols=96 Identities=16% Similarity=0.069 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYA 429 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 429 (509)
...+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|...++++++.+|.++..|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666677777888888888888775 3344 56788888888888888888888888888888888888888888888
Q ss_pred HcCCchHHHHHHHHHHhC
Q 010496 430 AVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~ 447 (509)
..|++++|...|++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 888888888888888764
No 136
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.65 E-value=3.7e-07 Score=84.51 Aligned_cols=128 Identities=14% Similarity=0.059 Sum_probs=97.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-------------CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-
Q 010496 318 SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-------------RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP- 382 (509)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p- 382 (509)
.+..+...+.+.|++++|+..|+++.+.....+ ....|..+..+|.+.|++++|+..+++. ...|
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 228 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSN 228 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 444445555555555555555555553211100 1467888888999999999999998886 4445
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHH-HHHHHHHH
Q 010496 383 NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGA-GKIRRTMK 445 (509)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~m~ 445 (509)
+...+..+..++...|++++|...|+++++..|.+..++..++.++.+.|++++| ...++.|.
T Consensus 229 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 229 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999999999999999999999999999999998 45666664
No 137
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.63 E-value=3.6e-07 Score=77.61 Aligned_cols=116 Identities=15% Similarity=0.044 Sum_probs=55.9
Q ss_pred hCCCHHHHHH---HHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHccCCHH
Q 010496 161 RRGDIESAVR---MFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQIS----GVEP-DYVTIISVLNACANVGTLG 232 (509)
Q Consensus 161 ~~~~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~~~~~ 232 (509)
..|++++|.+ .+..-+.....++..+...+...|++++|...+++.... +..+ ....+..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3455555555 443322224455556666666666666666666655441 1111 1234445555555666666
Q ss_pred HHHHHHHHHHHc----CCC--CcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010496 233 IGLWIHRYVLKQ----DFK--DNVKVCNTLIDLYSRCGCIEFARQVFQRM 276 (509)
Q Consensus 233 ~a~~~~~~~~~~----~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (509)
+|...+++..+. +.. ....++..+..++...|++++|...+++.
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 666655555443 101 11233445555555555555555555443
No 138
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.62 E-value=3.2e-06 Score=74.48 Aligned_cols=179 Identities=6% Similarity=-0.122 Sum_probs=96.3
Q ss_pred cchhHHHHHHHHHHHhCCCCCchHHHHHH-------HHHHHhcCCchHHHHHHHhcCCC---------C-----------
Q 010496 96 QCLFLGAMIHGLVCKLGLDRNNVMVGTAL-------LDMYAKFGRMDLATVVFDAMRVK---------S----------- 148 (509)
Q Consensus 96 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~---------~----------- 148 (509)
++...|.+.|..+.+.. |+....|..+ ..++.+.++..+++..+..-... +
T Consensus 20 ~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 20 MSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred CCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 55555566665555553 4445555555 34444444444544444443321 1
Q ss_pred ----hHHHHHHHHHHHhCCCHHHHHHHHhcCCCC--CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HhHHHH
Q 010496 149 ----SFTWNAMIDGYMRRGDIESAVRMFDEMPVR--DAISWTALLNGFVKRGYFEEALECFREMQISGVEPD--YVTIIS 220 (509)
Q Consensus 149 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~--~~~~~~ 220 (509)
...+..+...+...|++++|.++|+.+... +......+...+.+.+++++|+..|+...... .|. ...+..
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~ 176 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVA 176 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHH
Confidence 112334555666677777777777766533 21245555566677777777777776443321 111 224555
Q ss_pred HHHHHHccCCHHHHHHHHHHHHHcCCCC--cHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 010496 221 VLNACANVGTLGIGLWIHRYVLKQDFKD--NVKVCNTLIDLYSRCGCIEFARQVFQRMH 277 (509)
Q Consensus 221 l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 277 (509)
+..++...|++++|+..|++.......| ..........++.+.|+.++|...|+++.
T Consensus 177 LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 177 HGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5666666666666666666666433212 22344455555666666666666666554
No 139
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.62 E-value=1.6e-06 Score=70.75 Aligned_cols=93 Identities=13% Similarity=0.071 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYS 261 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (509)
.+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++.++.. +.+..++..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 34455555555566666666655555532 2234445555555555555555555555555543 334444444445555
Q ss_pred hcCCHHHHHHHHHhc
Q 010496 262 RCGCIEFARQVFQRM 276 (509)
Q Consensus 262 ~~g~~~~a~~~~~~~ 276 (509)
..|++++|...|+++
T Consensus 93 ~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 93 ALGKFRAALRDYETV 107 (166)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHH
Confidence 555555554444443
No 140
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.61 E-value=1.3e-07 Score=78.64 Aligned_cols=117 Identities=11% Similarity=0.099 Sum_probs=60.9
Q ss_pred cCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--HHH
Q 010496 329 AGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAA-CRTKGDI--ILA 403 (509)
Q Consensus 329 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~g~~--~~a 403 (509)
.|++++|...+++..+. .+.+...+..+...|...|++++|...+++. ...| +...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 44455555555554421 1223444555555555555555555555544 2222 34445555555 4455555 666
Q ss_pred HHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 404 ERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
...++++++..|.++..+..++.+|...|++++|...++++.+.
T Consensus 101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 66666666666665556666666666666666666666665554
No 141
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.58 E-value=5.6e-06 Score=75.43 Aligned_cols=218 Identities=12% Similarity=0.065 Sum_probs=157.6
Q ss_pred HccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC-CHHHHHHHHHhccCC---ChhhHHHHHHHHHhC-C-ChHH
Q 010496 226 ANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG-CIEFARQVFQRMHKR---TLVSWNSIIVGFAVN-G-FVGE 299 (509)
Q Consensus 226 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~-~-~~~~ 299 (509)
.+.+..++|++++.+++..+ |-+..+|+.-..++...| .+++++++++.+... +..+|+.-...+... + ++++
T Consensus 65 ~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHH
T ss_pred HhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHH
Confidence 33445578999999999987 777888888888888888 599999999998754 556777776666665 6 8899
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHH--------HHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC----
Q 010496 300 ALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIE--------DGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGR---- 367 (509)
Q Consensus 300 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---- 367 (509)
++++++++.+... -|...|..-.-.+.+.|.++ ++++.++++.+. .+-|...|+.....+.+.++
T Consensus 144 EL~~~~k~L~~dp-kNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 144 EIEYIHGSLLPDP-KNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHTSSCT-TCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccc
Confidence 9999999998643 36666665555555555555 889999999852 24578888888888888776
Q ss_pred ---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC------CC
Q 010496 368 ---LEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDI--------------------ILAERLMKYLVDLD------PG 416 (509)
Q Consensus 368 ---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~------~~ 416 (509)
++++++.++++ ...| |...|+.+-..+.+.|+. ....+....+.... +.
T Consensus 221 ~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLP 300 (349)
T ss_dssp HHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSC
T ss_pred hHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCC
Confidence 67888888776 4555 677888877777766653 33334444333332 33
Q ss_pred CCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 417 VDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 417 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
.+.++..|+..|...|+.++|.++++.+.+.
T Consensus 301 s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 301 VPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 4456889999999999999999999998643
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.57 E-value=3.5e-06 Score=71.42 Aligned_cols=25 Identities=12% Similarity=0.048 Sum_probs=12.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 319 FTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
+..+...+...|++++|...+++..
T Consensus 110 ~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 110 AYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3344444445555555555554443
No 143
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.57 E-value=4.1e-07 Score=68.62 Aligned_cols=98 Identities=15% Similarity=0.046 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG--VDSNYVLLANM 427 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~ 427 (509)
...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|.+.++++++..|. +...+..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 445666777777888888888887775 3333 5667888888888999999999999999999888 88889999999
Q ss_pred HHHc-CCchHHHHHHHHHHhCCC
Q 010496 428 YAAV-GKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 428 ~~~~-g~~~~A~~~~~~m~~~~~ 449 (509)
|.+. |++++|.+.+++......
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHhCCHHHHHHHHHHHhhccc
Confidence 9999 999999999998877653
No 144
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.55 E-value=2.8e-07 Score=82.99 Aligned_cols=189 Identities=9% Similarity=-0.035 Sum_probs=99.0
Q ss_pred HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHH
Q 010496 215 YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGF 291 (509)
Q Consensus 215 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~ 291 (509)
...+..+...+...|++++|...|+++++.. +.+...+..+..+|.+.|++++|...++++.+ .+...+..+..++
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3444455555556666666666666665554 44556666666666666666666666666553 2345566666666
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 010496 292 AVNGFVGEALEYFNSMQKEGFKPDG-VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLED 370 (509)
Q Consensus 292 ~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (509)
...|++++|+..|++..+.. |+. ..+...+....+ ...+.. +.... ....+.+......+... ..|++++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~---~~~~~~-~~~~~-~~~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALR---IAKKKR-WNSIE-ERRIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHH---HHHHHH-HHHHH-HTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHH---HHHHHH-HHHHH-HHHHhhhHHHHHHHHHH--HHHHHHH
Confidence 66777777777776665531 111 011111111111 111111 11122 12333444443333322 2578888
Q ss_pred HHHHHHhC-CCCCCHHHH-HHHHHHHHhc-CCHHHHHHHHHHHHhc
Q 010496 371 ALNVVENM-PMKPNEVVL-GSLLAACRTK-GDIILAERLMKYLVDL 413 (509)
Q Consensus 371 A~~~~~~~-~~~p~~~~~-~~l~~~~~~~-g~~~~a~~~~~~~~~~ 413 (509)
|++.++.. ...|+.... ..+...+.+. +.+++|.++|.++.+.
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 88887765 566665433 3333334443 5678888888877663
No 145
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.54 E-value=1.1e-06 Score=70.38 Aligned_cols=93 Identities=14% Similarity=0.028 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYS 261 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (509)
.+..+...+.+.|++++|+..|++..... +.+...|..+..++...|++++|...|+++++.. |.+...+..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 34444444444555555555555444432 2233444444444444444444444444444443 333444444444444
Q ss_pred hcCCHHHHHHHHHhc
Q 010496 262 RCGCIEFARQVFQRM 276 (509)
Q Consensus 262 ~~g~~~~a~~~~~~~ 276 (509)
..|++++|...|+++
T Consensus 116 ~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 116 RLKAPLKAKECFELV 130 (151)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 444444444444433
No 146
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.53 E-value=3.7e-06 Score=64.58 Aligned_cols=93 Identities=20% Similarity=0.272 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 010496 181 ISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLY 260 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (509)
..+..+...+...|++++|.++++++.... +.+...+..+...+...|++++|..+++++.+.. +.+..++..+..++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 344444455555555555555555554432 2233444444444445555555555555444433 33334444444444
Q ss_pred HhcCCHHHHHHHHHh
Q 010496 261 SRCGCIEFARQVFQR 275 (509)
Q Consensus 261 ~~~g~~~~a~~~~~~ 275 (509)
...|++++|...|++
T Consensus 88 ~~~~~~~~A~~~~~~ 102 (125)
T 1na0_A 88 YKQGDYDEAIEYYQK 102 (125)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHH
Confidence 444444444444443
No 147
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.53 E-value=3.7e-07 Score=71.03 Aligned_cols=94 Identities=9% Similarity=-0.017 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-------hHHH
Q 010496 353 EHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS-------NYVL 423 (509)
Q Consensus 353 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~ 423 (509)
..+..+...+.+.|++++|++.|++. .+.| +...|..+..+|...|++++|++.++++++..|.+.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 34566777777777777777777765 4445 4667777888888888888888888888887766433 5667
Q ss_pred HHHHHHHcCCchHHHHHHHHHHh
Q 010496 424 LANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 424 l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
++.++...|++++|++.|++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77778888888888888887765
No 148
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.53 E-value=1.1e-06 Score=69.27 Aligned_cols=98 Identities=10% Similarity=-0.035 Sum_probs=80.3
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 010496 350 PRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANM 427 (509)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 427 (509)
.+...+..+...+...|++++|...|++. ...| +...+..+..++...|++++|...++++++..|.++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35667777778888888888888888775 3334 467888888888889999999999999999888888889999999
Q ss_pred HHHcCCchHHHHHHHHHHhC
Q 010496 428 YAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 428 ~~~~g~~~~A~~~~~~m~~~ 447 (509)
|...|++++|...|++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999888764
No 149
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.52 E-value=6.8e-07 Score=73.13 Aligned_cols=109 Identities=13% Similarity=0.019 Sum_probs=74.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 010496 315 DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLA 392 (509)
Q Consensus 315 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~ 392 (509)
+...+..+...+.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34556666777777777777777777777422 235666777777777777777777777765 3344 4567777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 010496 393 ACRTKGDIILAERLMKYLVDLDPGVDSNYVLLA 425 (509)
Q Consensus 393 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 425 (509)
++...|++++|...|+++++..|.+...+...+
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 777777777777777777777777666544433
No 150
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.51 E-value=4.7e-07 Score=69.75 Aligned_cols=93 Identities=17% Similarity=-0.089 Sum_probs=80.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcC
Q 010496 355 YGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVG 432 (509)
Q Consensus 355 ~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 432 (509)
+..+...+.+.|++++|+..+++. ...| +...|..+..++...|++++|+..++++++.+|.++..+..++.+|.+.|
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 455667788899999999999887 4455 67788888899999999999999999999999999889999999999999
Q ss_pred CchHHHHHHHHHHhC
Q 010496 433 KWDGAGKIRRTMKGR 447 (509)
Q Consensus 433 ~~~~A~~~~~~m~~~ 447 (509)
++++|+..+++..+.
T Consensus 100 ~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 100 NANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999988764
No 151
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.51 E-value=3.1e-06 Score=65.69 Aligned_cols=94 Identities=13% Similarity=-0.006 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 010496 181 ISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLY 260 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (509)
..+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence 344444555555555555555555554432 2234444444445555555555555555554443 33344444444444
Q ss_pred HhcCCHHHHHHHHHhc
Q 010496 261 SRCGCIEFARQVFQRM 276 (509)
Q Consensus 261 ~~~g~~~~a~~~~~~~ 276 (509)
...|++++|...|++.
T Consensus 91 ~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKA 106 (131)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHH
Confidence 4444444444444443
No 152
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.50 E-value=9.6e-07 Score=74.80 Aligned_cols=96 Identities=13% Similarity=-0.006 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Q 010496 353 EHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAA 430 (509)
Q Consensus 353 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 430 (509)
..+..+..+|.+.|++++|+..+++. ...| +...+..+..++...|++++|.+.|+++++..|.++.++..+..++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 56777888888888888888888776 3344 567888899999999999999999999999999998899999999988
Q ss_pred cCCchHHH-HHHHHHHhCC
Q 010496 431 VGKWDGAG-KIRRTMKGRG 448 (509)
Q Consensus 431 ~g~~~~A~-~~~~~m~~~~ 448 (509)
.++.+++. ..+..|...+
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 88877776 5566655443
No 153
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.50 E-value=2.8e-06 Score=66.26 Aligned_cols=97 Identities=11% Similarity=0.033 Sum_probs=61.6
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLID 258 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (509)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 45556666667777777777777777766542 2345566666666666777777777777666654 445556666666
Q ss_pred HHHhcCCHHHHHHHHHhcc
Q 010496 259 LYSRCGCIEFARQVFQRMH 277 (509)
Q Consensus 259 ~~~~~g~~~~a~~~~~~~~ 277 (509)
++...|++++|.+.|++..
T Consensus 93 ~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHH
Confidence 6666666666666666554
No 154
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.50 E-value=1.6e-06 Score=71.89 Aligned_cols=127 Identities=10% Similarity=0.089 Sum_probs=99.2
Q ss_pred HhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH-HHhcCCh--
Q 010496 292 AVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDL-YSRAGRL-- 368 (509)
Q Consensus 292 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 368 (509)
...|++++|+..+++..... +.+...+..+...+...|++++|...|+++.+.. +.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence 34678888998998888763 3466788888888999999999999999988532 3356778888888 7788998
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchH
Q 010496 369 EDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNY 421 (509)
Q Consensus 369 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 421 (509)
++|...++++ ...| +...+..+...+...|++++|...++++++..|.++...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 9999999886 4445 567888889999999999999999999999999876543
No 155
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.49 E-value=1.1e-06 Score=70.35 Aligned_cols=91 Identities=11% Similarity=-0.091 Sum_probs=40.3
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc---CCChhhHHHHHHHHHhC
Q 010496 218 IISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH---KRTLVSWNSIIVGFAVN 294 (509)
Q Consensus 218 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~ 294 (509)
+..+...+...|++++|...|++++... |.+...+..+..+|...|++++|+..|+++. ..+...+..+..++...
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 102 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQX 102 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 3334444444444444444444444443 3344444444444444444444444444433 12333444444444444
Q ss_pred CChHHHHHHHHHHHH
Q 010496 295 GFVGEALEYFNSMQK 309 (509)
Q Consensus 295 ~~~~~A~~~~~~m~~ 309 (509)
|++++|+..|++.++
T Consensus 103 g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 103 GELAEAESGLFLAQE 117 (148)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 444444444444433
No 156
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.48 E-value=2.6e-06 Score=64.73 Aligned_cols=108 Identities=17% Similarity=0.082 Sum_probs=59.6
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 010496 318 SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACR 395 (509)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~ 395 (509)
.+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|...+++. ...| +...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444455555556666666666555531 1223445555555555556666665555554 2223 3455666666666
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHHHHHH
Q 010496 396 TKGDIILAERLMKYLVDLDPGVDSNYVLLANM 427 (509)
Q Consensus 396 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 427 (509)
..|++++|.+.++++.+..|.++..+..++.+
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 66666666666666666666655555544443
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.48 E-value=3.7e-05 Score=69.74 Aligned_cols=231 Identities=13% Similarity=0.075 Sum_probs=131.1
Q ss_pred HcCChH-HHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccCC----------HHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 010496 192 KRGYFE-EALECFREMQISGVEPD-YVTIISVLNACANVGT----------LGIGLWIHRYVLKQDFKDNVKVCNTLIDL 259 (509)
Q Consensus 192 ~~~~~~-~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (509)
+.|.++ +|++++..+... .|+ ...|+.--..+...+. +++++.++..++... |.+..+|+.-.-+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344443 667777777663 343 3333332222222221 566777777777665 6667777766666
Q ss_pred HHhcC--CHHHHHHHHHhccC---CChhhHHHHHHHHHhCCC-hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----
Q 010496 260 YSRCG--CIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGF-VGEALEYFNSMQKEGFKPDGVSFTGALTACSHA---- 329 (509)
Q Consensus 260 ~~~~g--~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---- 329 (509)
+...+ .+++++++++++.+ .+..+|+.-.-.+...|. ++++++.++++++..+. |...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcc
Confidence 66666 37777777777763 345566666666666666 47777877777776433 555555444444333
Q ss_pred ----------CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHhC-CCCCCH-HH
Q 010496 330 ----------GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRA-----------GRLEDALNVVENM-PMKPNE-VV 386 (509)
Q Consensus 330 ----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~~~~~~-~~~p~~-~~ 386 (509)
+.++++++.+...... .+-|...|+.+-..+.+. +.++++++.++++ ...||. ..
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~ 274 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWC 274 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchH
Confidence 3466777777777642 233566666554444444 2355666666665 445543 22
Q ss_pred HHHHHH---HHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 010496 387 LGSLLA---ACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMY 428 (509)
Q Consensus 387 ~~~l~~---~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 428 (509)
+..++. .....|..+++...+.++++++|....-|..+...+
T Consensus 275 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~ 319 (331)
T 3dss_A 275 LLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 319 (331)
T ss_dssp HHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence 222221 112346677777778888777777655566555443
No 158
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.46 E-value=1.7e-06 Score=65.73 Aligned_cols=97 Identities=21% Similarity=0.195 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYA 429 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 429 (509)
...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 456778888999999999999999987 3344 67788999999999999999999999999999999899999999999
Q ss_pred HcCCchHHHHHHHHHHhCC
Q 010496 430 AVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~~ 448 (509)
..|++++|.+.+++..+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTC
T ss_pred HHhhHHHHHHHHHHHHHcC
Confidence 9999999999999987753
No 159
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.46 E-value=2.2e-06 Score=68.40 Aligned_cols=95 Identities=15% Similarity=0.042 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN----EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLAN 426 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 426 (509)
...+..+...+...|++++|.+.+++. ...|+ ...+..+...+...|++++|...++++++..|.++..+..++.
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~ 107 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ 107 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence 444555555555666666666665554 44444 3455555566666666666666666666666665556666666
Q ss_pred HHHHcCCchHHHHHHHHHHh
Q 010496 427 MYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~ 446 (509)
+|...|++++|...|++..+
T Consensus 108 ~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 108 ALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666554
No 160
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.45 E-value=2.8e-06 Score=69.34 Aligned_cols=94 Identities=9% Similarity=-0.009 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 010496 282 VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDL 361 (509)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 361 (509)
..|..+...+...|++++|+..|++.++.. +-+...+..+..++.+.|++++|+..++++.+.. +.+...|..+..+
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD--PKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHH
Confidence 345555666666666666666666666542 2245555556666666666666666666666321 2235556666666
Q ss_pred HHhcCChHHHHHHHHhC
Q 010496 362 YSRAGRLEDALNVVENM 378 (509)
Q Consensus 362 ~~~~g~~~~A~~~~~~~ 378 (509)
|...|++++|.+.|++.
T Consensus 89 ~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHH
Confidence 66666666666666554
No 161
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.44 E-value=2.2e-06 Score=66.40 Aligned_cols=110 Identities=8% Similarity=-0.077 Sum_probs=76.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 010496 317 VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAAC 394 (509)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 394 (509)
..+..+...+.+.|++++|+..|++..+. .+.+...|..+..+|.+.|++++|+..+++. ...| +...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34555666677777777777777777642 2335667777777777777777777777765 3344 466777788888
Q ss_pred HhcCCHHHHHHHHHHHHhcC------CCCCchHHHHHHHH
Q 010496 395 RTKGDIILAERLMKYLVDLD------PGVDSNYVLLANMY 428 (509)
Q Consensus 395 ~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~ 428 (509)
...|++++|...++++++.. |.++.....+..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 88888888888888888887 66555555555443
No 162
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.44 E-value=4.1e-06 Score=77.45 Aligned_cols=118 Identities=12% Similarity=0.028 Sum_probs=60.5
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----------------HhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 010496 180 AISWTALLNGFVKRGYFEEALECFREMQISGVEPD----------------YVTIISVLNACANVGTLGIGLWIHRYVLK 243 (509)
Q Consensus 180 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 243 (509)
...+..+...+.+.|++++|+..|++..... |+ ...|..+..++.+.|++++|...++++++
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWL--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445556666666666666666666665542 22 24444555555555555555555555555
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHH
Q 010496 244 QDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEA 300 (509)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A 300 (509)
.. +.+...+..+..+|...|++++|...|+++.+ .+...+..+..++...|+.++|
T Consensus 225 ~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 225 LD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 43 34444555555555555555555555544431 2333444444444444444444
No 163
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.42 E-value=6.9e-07 Score=75.72 Aligned_cols=114 Identities=18% Similarity=0.052 Sum_probs=54.8
Q ss_pred hCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----------------hHHHHH
Q 010496 161 RRGDIESAVRMFDEMPVR---DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDY----------------VTIISV 221 (509)
Q Consensus 161 ~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~----------------~~~~~l 221 (509)
..|+++++.+.++.-... ....+..+...+...|++++|+..|++..... +.+. ..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 94 (198)
T 2fbn_A 16 NLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF-IHTEEWDDQILLDKKKNIEISCNLNL 94 (198)
T ss_dssp ------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-TTCTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-hcccccchhhHHHHHHHHHHHHHHHH
Confidence 344444444444432211 23345556666666677777777766666532 1111 344444
Q ss_pred HHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010496 222 LNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRM 276 (509)
Q Consensus 222 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (509)
..++...|++++|...++++++.. +.+...+..+..+|...|++++|.+.|++.
T Consensus 95 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 95 ATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 555555555555555555555543 344445555555555555555555555444
No 164
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=5.5e-06 Score=65.99 Aligned_cols=111 Identities=11% Similarity=-0.053 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHH
Q 010496 315 DGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR----IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLG 388 (509)
Q Consensus 315 ~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~ 388 (509)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|...+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 445566666677777777777777777762 2344 566677777777888888888777765 3334 566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 010496 389 SLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMY 428 (509)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 428 (509)
.+..++...|++++|...++++++..|.++..+..+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 8888888899999999999999998888776666655543
No 165
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.41 E-value=2e-06 Score=68.41 Aligned_cols=105 Identities=14% Similarity=-0.017 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 010496 317 VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAAC 394 (509)
Q Consensus 317 ~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~ 394 (509)
..+..+...+.+.|++++|...|+++.+. .+.+...|..+..+|.+.|++++|+..+++. ...| +...+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34555666777888888888888888742 2345677778888888888888888888776 3344 456777888888
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 010496 395 RTKGDIILAERLMKYLVDLDPGVDSNYVL 423 (509)
Q Consensus 395 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 423 (509)
...|++++|.+.|+++++..|.++.....
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 99999999999999999988877655443
No 166
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.41 E-value=2.8e-06 Score=69.25 Aligned_cols=64 Identities=14% Similarity=0.042 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 384 EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 384 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
...|..+..++...|++++|+..++++++.+|.++.+|..++.+|...|++++|...|++..+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3577778888888899999999999998888888888888999999999999999988888764
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.39 E-value=5.4e-06 Score=64.31 Aligned_cols=89 Identities=12% Similarity=0.048 Sum_probs=42.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---C-------hhhHHHHHH
Q 010496 220 SVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---T-------LVSWNSIIV 289 (509)
Q Consensus 220 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~-------~~~~~~l~~ 289 (509)
.+...+.+.|++++|+..|+++++.. |.+..+|..+..+|...|++++|++.|++..+- + ..+|..+..
T Consensus 13 ~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~ 91 (127)
T 4gcn_A 13 DLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGN 91 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHH
Confidence 33444444444444444444444443 333444444444444445544444444443311 0 123444555
Q ss_pred HHHhCCChHHHHHHHHHHHH
Q 010496 290 GFAVNGFVGEALEYFNSMQK 309 (509)
Q Consensus 290 ~~~~~~~~~~A~~~~~~m~~ 309 (509)
++...|++++|++.|++.+.
T Consensus 92 ~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 92 AFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHh
Confidence 55566666666666666555
No 168
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.39 E-value=1.3e-06 Score=69.34 Aligned_cols=63 Identities=10% Similarity=-0.086 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------CCCCCchH----HHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 385 VVLGSLLAACRTKGDIILAERLMKYLVDL-------DPGVDSNY----VLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 385 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
..|..+..++.+.|++++|+..++++++. +|++...| ...+.++...|++++|+..|++..+.
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 38888888899999999999999999998 99988888 99999999999999999999998764
No 169
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.37 E-value=4.5e-06 Score=80.71 Aligned_cols=96 Identities=10% Similarity=0.093 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYA 429 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 429 (509)
...|..+..+|.+.|++++|+..++++ .+.| +...|..+..+|...|++++|...|+++++..|.+..++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467788888899999999999998886 4444 57789999999999999999999999999999999999999999999
Q ss_pred HcCCchHHHH-HHHHHHhC
Q 010496 430 AVGKWDGAGK-IRRTMKGR 447 (509)
Q Consensus 430 ~~g~~~~A~~-~~~~m~~~ 447 (509)
+.|++++|.+ .++.|..+
T Consensus 397 ~~~~~~~a~~~~~~~~f~k 415 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMFKK 415 (457)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999988764 55555443
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.36 E-value=8e-06 Score=78.47 Aligned_cols=118 Identities=7% Similarity=-0.060 Sum_probs=59.1
Q ss_pred ccCCHHHHHHHHHHhHHh---cCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHhC-----C--CCCC-HHHHHHHHHHHH
Q 010496 328 HAGLIEDGLRYFDIMKKI---YRVSP-RIEHYGCIVDLYSRAGRLEDALNVVENM-----P--MKPN-EVVLGSLLAACR 395 (509)
Q Consensus 328 ~~~~~~~a~~~~~~~~~~---~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~--~~p~-~~~~~~l~~~~~ 395 (509)
..|+++.|..+++..... .+..+ -..++..+...|...|++++|..+++++ + .++. ..++..++..|.
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 345555555555544321 11111 1334555555666666666666555543 1 1121 235555566666
Q ss_pred hcCCHHHHHHHHHHHHhcCCC---CC----chHHHHHHHHHHcCCchHHHHHHHHHH
Q 010496 396 TKGDIILAERLMKYLVDLDPG---VD----SNYVLLANMYAAVGKWDGAGKIRRTMK 445 (509)
Q Consensus 396 ~~g~~~~a~~~~~~~~~~~~~---~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~ 445 (509)
..|++++|..++++++...+. ++ ..+..++..+...|++++|...|.+..
T Consensus 187 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 187 KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 666666666666665553221 11 134455555556666666666555543
No 171
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.35 E-value=1.7e-06 Score=84.06 Aligned_cols=119 Identities=13% Similarity=0.033 Sum_probs=94.8
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 010496 323 LTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDI 400 (509)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~ 400 (509)
...+.+.|++++|+..++++.+. .+.+...|..+..+|.+.|++++|++.+++. ...| +...+..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 33456778888888888888843 2335778888888999999999999988876 4455 567889999999999999
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHH--HHHcCCchHHHHHHHH
Q 010496 401 ILAERLMKYLVDLDPGVDSNYVLLANM--YAAVGKWDGAGKIRRT 443 (509)
Q Consensus 401 ~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~ 443 (509)
++|.+.++++++..|.+...+..++.+ +.+.|++++|++.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999988888888888 8889999999999884
No 172
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.34 E-value=0.0002 Score=64.85 Aligned_cols=218 Identities=11% Similarity=0.034 Sum_probs=156.5
Q ss_pred HccCCH-HHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC----------HHHHHHHHHhccC---CChhhHHHHHHHH
Q 010496 226 ANVGTL-GIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGC----------IEFARQVFQRMHK---RTLVSWNSIIVGF 291 (509)
Q Consensus 226 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~---~~~~~~~~l~~~~ 291 (509)
.+.|.+ ++|+.++..++..+ |-+..+|+.--.++...+. +++++.+++.+.. .+..+|+.-.-.+
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345554 58899999999876 6666777665555544443 6788888888763 4667788777777
Q ss_pred HhCC--ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc---
Q 010496 292 AVNG--FVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGL-IEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRA--- 365 (509)
Q Consensus 292 ~~~~--~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--- 365 (509)
...+ .+++++.+++++.+.... |...|+.-..++...|. +++++..+.++.+. .+-|...|+.....+.+.
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCC
T ss_pred hccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhc
Confidence 7777 489999999999997433 66777766666677787 68999999999953 245677777766666554
Q ss_pred -----------CChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhcCCCCCchH
Q 010496 366 -----------GRLEDALNVVENM-PMKP-NEVVLGSLLAACRTK-----------GDIILAERLMKYLVDLDPGVDSNY 421 (509)
Q Consensus 366 -----------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~ 421 (509)
+.++++++.+... ...| |...|+.+-..+... +.++++++.++++++..|++.-.+
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l 275 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCL 275 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHH
Confidence 4577888888776 4455 667777666655554 468999999999999999874444
Q ss_pred HHHHHHH---HHcCCchHHHHHHHHHHhC
Q 010496 422 VLLANMY---AAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 422 ~~l~~~~---~~~g~~~~A~~~~~~m~~~ 447 (509)
..++... ...|..+++...+.++++.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 276 LTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 4443322 2457788899999998764
No 173
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.33 E-value=2.3e-06 Score=66.55 Aligned_cols=90 Identities=19% Similarity=0.136 Sum_probs=53.2
Q ss_pred HHHHHHhcCChHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---CchHHHHHHHHH
Q 010496 358 IVDLYSRAGRLEDALNVVENM-PMKPN-E---VVLGSLLAACRTKGDIILAERLMKYLVDLDPGV---DSNYVLLANMYA 429 (509)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~~-~~~p~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~~ 429 (509)
+...+...|++++|...++++ ...|+ . ..+..+..++...|++++|...++++++..|.+ +.++..++.+|.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 344455555666665555554 22222 1 355555666666666666666666666666665 445666666666
Q ss_pred HcCCchHHHHHHHHHHhC
Q 010496 430 AVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 430 ~~g~~~~A~~~~~~m~~~ 447 (509)
+.|++++|...|+++.+.
T Consensus 88 ~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 666666666666666553
No 174
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.33 E-value=5.2e-06 Score=65.24 Aligned_cols=101 Identities=9% Similarity=-0.109 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHH
Q 010496 314 PDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLL 391 (509)
Q Consensus 314 p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~ 391 (509)
.+...+..+...+...|++++|...|++..+. .+.+...+..+..++...|++++|...+++. ...| +...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34566667777777777777777777777742 2334667777777777888888887777765 3334 466778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 392 AACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
.++...|++++|...++++++..|.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888888888888888888887766
No 175
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.30 E-value=3.7e-05 Score=73.78 Aligned_cols=192 Identities=7% Similarity=-0.040 Sum_probs=110.2
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCH----------------hHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-Cc
Q 010496 187 LNGFVKRGYFEEALECFREMQISGVEPDY----------------VTIISVLNACANVGTLGIGLWIHRYVLKQDFK-DN 249 (509)
Q Consensus 187 i~~~~~~~~~~~A~~~~~~m~~~~~~p~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 249 (509)
...+.+.|++++|++.|..+.+....... ..+..+...|...|++++|.+++.++.+.--. ++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45677888888898888888775322111 12556677777777777777777766543101 11
Q ss_pred H----hHHHHHHHHHHhcCCHHHHHHHHHhccC-----C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHHC--CC--
Q 010496 250 V----KVCNTLIDLYSRCGCIEFARQVFQRMHK-----R----TLVSWNSIIVGFAVNGFVGEALEYFNSMQKE--GF-- 312 (509)
Q Consensus 250 ~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~-- 312 (509)
. .+.+.+...+...|+++.|..+++.... . -..++..+...+...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 2233334444455677777776665531 1 1235566666777777777777777766542 11
Q ss_pred CCC-HHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC---CCCC--HHHHHHHHHHHHhcCChHHHHHHHHhC
Q 010496 313 KPD-GVSFTGALTACSHAGLIEDGLRYFDIMKKIYR---VSPR--IEHYGCIVDLYSRAGRLEDALNVVENM 378 (509)
Q Consensus 313 ~p~-~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~---~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 378 (509)
.+. ...+..++..|...|++++|..++++...... .++. ...+..+...+...|++++|...+.+.
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 111 23555666667777777777777766553211 1111 233445555566667777776666554
No 176
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.28 E-value=6.6e-06 Score=61.73 Aligned_cols=92 Identities=15% Similarity=0.017 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--cHhHHHHHHHH
Q 010496 182 SWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKD--NVKVCNTLIDL 259 (509)
Q Consensus 182 ~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 259 (509)
.+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++.+.. +. +..++..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 33344444444444444444444444432 2233334444444444444444444444444432 22 33334444444
Q ss_pred HHhc-CCHHHHHHHHHh
Q 010496 260 YSRC-GCIEFARQVFQR 275 (509)
Q Consensus 260 ~~~~-g~~~~a~~~~~~ 275 (509)
+... |++++|.+.+++
T Consensus 86 ~~~~~~~~~~A~~~~~~ 102 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEAR 102 (112)
T ss_dssp HTTCSSCSHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHH
Confidence 4444 444444444433
No 177
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.27 E-value=3.7e-06 Score=65.26 Aligned_cols=107 Identities=7% Similarity=-0.002 Sum_probs=57.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CC----CCC----HHHHHH
Q 010496 319 FTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PM----KPN----EVVLGS 389 (509)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~~~ 389 (509)
+..+...+...|++++|...++++.+. .+.+...+..+...|...|++++|...+++. .. .++ ..++..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 344444455555555555555555431 1223444455555555555555555555443 11 112 445666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH
Q 010496 390 LLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMY 428 (509)
Q Consensus 390 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 428 (509)
+..++...|++++|.+.++++.+..| ++.....+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 66777777777777777777777666 344444444443
No 178
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.26 E-value=4.1e-06 Score=64.97 Aligned_cols=96 Identities=15% Similarity=0.133 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------CchHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV-------DSNYV 422 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~ 422 (509)
...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|.+ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456778888999999999999999887 3334 67788999999999999999999999999987765 66799
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 423 LLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 423 ~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
.++.+|.+.|++++|.+.|++..+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999998874
No 179
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.26 E-value=9e-06 Score=62.40 Aligned_cols=93 Identities=12% Similarity=-0.070 Sum_probs=53.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh
Q 010496 183 WTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR 262 (509)
Q Consensus 183 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 262 (509)
+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...++++++.. |.+...+..+..+|..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 3344555566666666666666665542 2245555555556666666666666666666554 4445555556666666
Q ss_pred cCCHHHHHHHHHhcc
Q 010496 263 CGCIEFARQVFQRMH 277 (509)
Q Consensus 263 ~g~~~~a~~~~~~~~ 277 (509)
.|++++|...|+++.
T Consensus 98 ~g~~~~A~~~~~~al 112 (121)
T 1hxi_A 98 EHNANAALASLRAWL 112 (121)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 666666666655544
No 180
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.25 E-value=3.7e-06 Score=68.05 Aligned_cols=128 Identities=16% Similarity=0.028 Sum_probs=72.5
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhC-C---CCCC----HHH
Q 010496 319 FTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR----IEHYGCIVDLYSRAGRLEDALNVVENM-P---MKPN----EVV 386 (509)
Q Consensus 319 ~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~ 386 (509)
+..+...+...|++++|...+++..+...-.++ ..++..+...+...|++++|.+.+++. . ..++ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 333444444455555555555444321110011 124445555555566666665555543 0 0111 335
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------CCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 387 LGSLLAACRTKGDIILAERLMKYLVDLDPG------VDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
+..+...+...|++++|.+.++++++..+. ....+..++.+|...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666677777788888888888777764321 123577788888888888888888887654
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.24 E-value=1.5e-05 Score=77.45 Aligned_cols=116 Identities=12% Similarity=0.062 Sum_probs=54.9
Q ss_pred HHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHH
Q 010496 258 DLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIED 334 (509)
Q Consensus 258 ~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 334 (509)
..+.+.|++++|.+.|+++.+ .+...|..+..+|.+.|++++|+..+++..+.. +-+...+..+..++...|++++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 344455556666665555432 234455555555555555555555555555542 1234455555555555555555
Q ss_pred HHHHHHHhHHhcCCCCCHHHHHHHHHH--HHhcCChHHHHHHHH
Q 010496 335 GLRYFDIMKKIYRVSPRIEHYGCIVDL--YSRAGRLEDALNVVE 376 (509)
Q Consensus 335 a~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~~~~ 376 (509)
|...++++.+...- +...+..+..+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p~--~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPH--DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTT--CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 55555555532211 12223333322 445555555555554
No 182
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.23 E-value=1.6e-05 Score=76.84 Aligned_cols=124 Identities=8% Similarity=0.031 Sum_probs=99.2
Q ss_pred HHhccCCHHHHHHHHHHhHHhcC--CC---C-CHHHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHHHH
Q 010496 325 ACSHAGLIEDGLRYFDIMKKIYR--VS---P-RIEHYGCIVDLYSRAGRLEDALNVVENM---------PMKPN-EVVLG 388 (509)
Q Consensus 325 ~~~~~~~~~~a~~~~~~~~~~~~--~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~ 388 (509)
.+...|++++|+.++++..+... +. | ...+++.|...|...|++++|..++++. ...|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35678999999999988764322 11 2 2567889999999999999999988775 23454 34889
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCch---HHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 389 SLLAACRTKGDIILAERLMKYLVD-----LDPGVDSN---YVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
.|...|...|++++|+.+++++++ .||++|.+ ...+..++...+++++|..+|.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999887 57776654 5678888999999999999999998743
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.22 E-value=1.1e-06 Score=67.14 Aligned_cols=81 Identities=17% Similarity=0.124 Sum_probs=46.6
Q ss_pred CChHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHH
Q 010496 366 GRLEDALNVVENM-PM---KP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKI 440 (509)
Q Consensus 366 g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 440 (509)
|++++|+..|++. .. .| +...+..+..++...|++++|...++++++..|.++.++..++.+|.+.|++++|+..
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4455555555544 22 13 2335555666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHh
Q 010496 441 RRTMKG 446 (509)
Q Consensus 441 ~~~m~~ 446 (509)
+++..+
T Consensus 84 ~~~al~ 89 (117)
T 3k9i_A 84 LLKIIA 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 184
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.22 E-value=1.8e-05 Score=61.28 Aligned_cols=102 Identities=15% Similarity=0.103 Sum_probs=66.0
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCC----HHHHHHHHHHHH
Q 010496 322 ALTACSHAGLIEDGLRYFDIMKKIYRVSPR-IEHYGCIVDLYSRAGRLEDALNVVENM-PMKPN----EVVLGSLLAACR 395 (509)
Q Consensus 322 li~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~ 395 (509)
+...+...|++++|...|+.+.+.....+. ...+..+..++.+.|++++|...+++. ...|+ ...+..+..++.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~ 87 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQY 87 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHH
Confidence 444556667777777777776642211111 145666667777777777777777665 23333 456777777888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 010496 396 TKGDIILAERLMKYLVDLDPGVDSNYVL 423 (509)
Q Consensus 396 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 423 (509)
..|++++|...++++++..|+++.....
T Consensus 88 ~~g~~~~A~~~~~~~~~~~p~~~~~~~a 115 (129)
T 2xev_A 88 GEGKNTEAQQTLQQVATQYPGSDAARVA 115 (129)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTSHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHCCCChHHHHH
Confidence 8888888888888888888876544333
No 185
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.20 E-value=2.8e-06 Score=78.55 Aligned_cols=148 Identities=11% Similarity=-0.045 Sum_probs=82.5
Q ss_pred hhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHH
Q 010496 281 LVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVD 360 (509)
Q Consensus 281 ~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 360 (509)
...+..+...+.+.|++++|+..|++.+.. .|+... +...++.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 345677777788888999999999888774 444332 22333444433222 1 136788888
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HHcCCchHH
Q 010496 361 LYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMY-AAVGKWDGA 437 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A 437 (509)
+|.+.|++++|+..+++. ...| +...|..+..+|...|++++|...|+++++..|.++.++..+..+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886 4445 5778889999999999999999999999999999888888888774 445677888
Q ss_pred HHHHHHHHhCC
Q 010496 438 GKIRRTMKGRG 448 (509)
Q Consensus 438 ~~~~~~m~~~~ 448 (509)
..+|++|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888886543
No 186
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.20 E-value=1.2e-05 Score=75.17 Aligned_cols=137 Identities=11% Similarity=-0.010 Sum_probs=99.1
Q ss_pred hhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCC-CHHHHHHHHH
Q 010496 282 VSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSP-RIEHYGCIVD 360 (509)
Q Consensus 282 ~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~ 360 (509)
..+..+...+.+.|++++|+..|++.++. .+... .... .+... ...| +...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHH
Confidence 34566666667777777777777666552 01000 0000 01111 1122 4567888899
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHH
Q 010496 361 LYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAG 438 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 438 (509)
+|.+.|++++|++.+++. ...| +...+..+..+|...|++++|...|+++++..|.+...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999886 5566 56788999999999999999999999999999999889999999998888887776
Q ss_pred HH
Q 010496 439 KI 440 (509)
Q Consensus 439 ~~ 440 (509)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
No 187
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.13 E-value=1.5e-05 Score=64.27 Aligned_cols=96 Identities=14% Similarity=0.077 Sum_probs=54.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHhC-------CCCC-CHH
Q 010496 318 SFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR----IEHYGCIVDLYSRAGRLEDALNVVENM-------PMKP-NEV 385 (509)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~p-~~~ 385 (509)
++..+...+...|++++|...+++..+......+ ...+..+...+...|++++|.+.+++. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 3444455555556666666555554421111111 334555556666666666666666554 1111 133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVDL 413 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 413 (509)
.+..+...+...|++++|.+.++++++.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5666777788888888888888887764
No 188
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.12 E-value=6.1e-06 Score=67.16 Aligned_cols=76 Identities=20% Similarity=0.132 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-chHHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVD-SNYVLLANM 427 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~ 427 (509)
...|..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|...|+++++..|.++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 467888888899999999999988876 4455 577888999999999999999999999999999876 444444443
No 189
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.12 E-value=0.00017 Score=71.42 Aligned_cols=137 Identities=10% Similarity=-0.010 Sum_probs=100.6
Q ss_pred hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--CHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC-ChHHHHH
Q 010496 297 VGEALEYFNSMQKEGFKPDGVSFTGALTACSHAG--LIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAG-RLEDALN 373 (509)
Q Consensus 297 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~ 373 (509)
++++++.++++.+...+ +..+|..-..++.+.+ +++++...++++.+. -+-+..+|+.-...+.+.| .++++++
T Consensus 89 ~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHH
Confidence 67777777777775322 5556666555666667 668888888888742 2345667776666667777 7788888
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchH
Q 010496 374 VVENM-PMKP-NEVVLGSLLAACRTK--------------GDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDG 436 (509)
Q Consensus 374 ~~~~~-~~~p-~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 436 (509)
.++++ ...| |...|+.....+... +.++++.+.+.+++..+|.+..+|..+...+.+.++.++
T Consensus 166 ~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 166 FTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 87776 4555 566777766666553 568999999999999999999999999999999888555
No 190
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.07 E-value=4.6e-06 Score=63.64 Aligned_cols=91 Identities=13% Similarity=0.095 Sum_probs=63.6
Q ss_pred cCCHHHHHHHHHHhHHhcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 010496 329 AGLIEDGLRYFDIMKKIYR--VSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAE 404 (509)
Q Consensus 329 ~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~ 404 (509)
.|++++|+..|+++.+ .+ .+.+...+..+..+|...|++++|+..+++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 4667777777777773 11 1224566777777888888888888888776 3344 4667778888888888889998
Q ss_pred HHHHHHHhcCCCCCch
Q 010496 405 RLMKYLVDLDPGVDSN 420 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~ 420 (509)
..++++++..|.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888888876554
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.04 E-value=1.8e-05 Score=73.13 Aligned_cols=152 Identities=9% Similarity=-0.040 Sum_probs=83.0
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 010496 250 VKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHA 329 (509)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 329 (509)
...+..+...+.+.|++++|...|++....+.... .+...++.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 45678888999999999999999998764322211 1223334444433221 13677788889999
Q ss_pred CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH-HHHHHHHHH-HHhcCCHHHHHHH
Q 010496 330 GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNE-VVLGSLLAA-CRTKGDIILAERL 406 (509)
Q Consensus 330 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~-~~~~g~~~~a~~~ 406 (509)
|++++|+..++++.+. .+.+...|..+..+|...|++++|...|++. .+.|+. ..+..+... ....+..+.+...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999853 2346788899999999999999999999887 566653 355555444 2345677888889
Q ss_pred HHHHHhcCCCCC
Q 010496 407 MKYLVDLDPGVD 418 (509)
Q Consensus 407 ~~~~~~~~~~~~ 418 (509)
|+++....|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999988887754
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.03 E-value=2.7e-06 Score=64.04 Aligned_cols=93 Identities=14% Similarity=0.050 Sum_probs=73.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------CchHH
Q 010496 351 RIEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV------DSNYV 422 (509)
Q Consensus 351 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~ 422 (509)
+...+..+...+.+.|++++|++.+++. ...| +...+..+..++...|++++|.+.++++++..|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 3456777778888888888888888776 3344 56788888889999999999999999999999987 56677
Q ss_pred HHHHHHHHcCCchHHHHHHHH
Q 010496 423 LLANMYAAVGKWDGAGKIRRT 443 (509)
Q Consensus 423 ~l~~~~~~~g~~~~A~~~~~~ 443 (509)
.++.++...|++++|.+.+++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHHH
Confidence 888888888877777665543
No 193
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.02 E-value=2.9e-05 Score=57.17 Aligned_cols=65 Identities=18% Similarity=0.147 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 383 NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
+...+..+..++...|++++|+..|+++++.+|.++.+|..++.+|...|++++|.+.|++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 56788889999999999999999999999999999999999999999999999999999988764
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.00 E-value=3.3e-05 Score=61.33 Aligned_cols=102 Identities=13% Similarity=0.014 Sum_probs=67.5
Q ss_pred HHHHHhccCCHHHHHHHHHHhHHhcCCCC-----C-----HHHHHHHHHHHHhcCChHHHHHHHHhC-CC-------CCC
Q 010496 322 ALTACSHAGLIEDGLRYFDIMKKIYRVSP-----R-----IEHYGCIVDLYSRAGRLEDALNVVENM-PM-------KPN 383 (509)
Q Consensus 322 li~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-------~p~ 383 (509)
....+.+.|++++|+..|++..+...-.| + ...|..+..++.+.|++++|+..+++. .+ .|+
T Consensus 17 ~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 17 DAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 33444455555555555555553211100 1 226677777777777777777766654 34 786
Q ss_pred H-HHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHH
Q 010496 384 E-VVL----GSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVL 423 (509)
Q Consensus 384 ~-~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 423 (509)
. ..| .....++...|++++|+..|++++++.|.+...+.-
T Consensus 97 ~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~ 141 (159)
T 2hr2_A 97 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPG 141 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTT
T ss_pred hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 4 477 888999999999999999999999999887655433
No 195
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.97 E-value=6.8e-05 Score=70.09 Aligned_cols=91 Identities=5% Similarity=-0.038 Sum_probs=64.9
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHH
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLID 258 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 258 (509)
+..+|..+..+|.+.|++++|++.+++..+.. +.+...+..+..++...|++++|...|+++.+.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45667777778888888888888888877643 3356677777777888888888888888877765 456666777777
Q ss_pred HHHhcCCHHHHHH
Q 010496 259 LYSRCGCIEFARQ 271 (509)
Q Consensus 259 ~~~~~g~~~~a~~ 271 (509)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7766666665543
No 196
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.97 E-value=0.0001 Score=71.12 Aligned_cols=119 Identities=11% Similarity=-0.052 Sum_probs=68.2
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC----------------HhHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 010496 180 AISWTALLNGFVKRGYFEEALECFREMQISGVEPD----------------YVTIISVLNACANVGTLGIGLWIHRYVLK 243 (509)
Q Consensus 180 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 243 (509)
...|..+...+.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|+..++++++
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 446667777777888888888888877764 222 24555555555666666666666666655
Q ss_pred cCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCC---ChhhHHHHHHHHHhCCChHHHH
Q 010496 244 QDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKR---TLVSWNSIIVGFAVNGFVGEAL 301 (509)
Q Consensus 244 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~ 301 (509)
.. +.+...|..+..+|...|++++|+..|+++.+. +...+..+..++...++.+++.
T Consensus 346 ~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 346 LD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred cC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 54 444555555555555555555555555554432 2334444555555545444443
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.95 E-value=2.7e-05 Score=59.02 Aligned_cols=77 Identities=16% Similarity=0.131 Sum_probs=61.9
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhC
Q 010496 371 ALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGR 447 (509)
Q Consensus 371 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 447 (509)
|++.+++. ...| +...+..+...+...|++++|...++++++..|.+...|..++.+|...|++++|...|++..+.
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45555554 4444 56678888888888999999999999999988888888889999999999999999999888764
No 198
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.89 E-value=7.2e-05 Score=53.55 Aligned_cols=81 Identities=21% Similarity=0.250 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYA 429 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 429 (509)
...+..+...+...|++++|...+++. ...| +...+..+..++...|++++|...++++++..|.++..+..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 445666677777777777777777665 3333 56677778888888888888888888888888888778888887776
Q ss_pred HcC
Q 010496 430 AVG 432 (509)
Q Consensus 430 ~~g 432 (509)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 554
No 199
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.77 E-value=1.3e-05 Score=63.41 Aligned_cols=85 Identities=18% Similarity=0.112 Sum_probs=63.3
Q ss_pred hcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHc
Q 010496 364 RAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGD----------IILAERLMKYLVDLDPGVDSNYVLLANMYAAV 431 (509)
Q Consensus 364 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 431 (509)
+.+.+++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|+...+|..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 334455555555554 3333 44555555555555544 67999999999999999999999999999987
Q ss_pred C-----------CchHHHHHHHHHHhCC
Q 010496 432 G-----------KWDGAGKIRRTMKGRG 448 (509)
Q Consensus 432 g-----------~~~~A~~~~~~m~~~~ 448 (509)
| ++++|++.|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999998753
No 200
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.73 E-value=0.00066 Score=53.19 Aligned_cols=109 Identities=10% Similarity=-0.046 Sum_probs=63.9
Q ss_pred ChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHh----cCCHHHHH
Q 010496 195 YFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSR----CGCIEFAR 270 (509)
Q Consensus 195 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~ 270 (509)
++++|+++|++..+.| .|+.. +...|...+..++|.+.|++..+.| +...+..|..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4566777777766665 33322 4555555556666777777666654 45556666666665 56666666
Q ss_pred HHHHhccC-CChhhHHHHHHHHHh----CCChHHHHHHHHHHHHCC
Q 010496 271 QVFQRMHK-RTLVSWNSIIVGFAV----NGFVGEALEYFNSMQKEG 311 (509)
Q Consensus 271 ~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~A~~~~~~m~~~g 311 (509)
+.|++..+ .++..+..+...|.. .++.++|..+|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66665543 344555555555555 556666666666655554
No 201
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.71 E-value=0.0002 Score=68.00 Aligned_cols=117 Identities=15% Similarity=0.087 Sum_probs=89.5
Q ss_pred HHHHHhcCChHHHHHHHHhC-C-----CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCc---h
Q 010496 359 VDLYSRAGRLEDALNVVENM-P-----MKPN----EVVLGSLLAACRTKGDIILAERLMKYLVD-----LDPGVDS---N 420 (509)
Q Consensus 359 i~~~~~~g~~~~A~~~~~~~-~-----~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~---~ 420 (509)
+..+.+.|++++|+.++++. . +.|+ ..+++.|+.+|...|++++|+.+++++++ .++.+|. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566788999998888765 1 2232 34889999999999999999999999876 4566554 4
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcccEEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHH
Q 010496 421 YVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLSSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKL 493 (509)
Q Consensus 421 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~ 493 (509)
+..|+..|...|++++|..++++..+--.. .-|..||...++...+......|+.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~~ 428 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIRA 428 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHhc
Confidence 889999999999999999999988762110 1234499999988888887777653
No 202
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.71 E-value=0.00046 Score=54.10 Aligned_cols=90 Identities=12% Similarity=-0.057 Sum_probs=50.9
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH---
Q 010496 358 IVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRT----KGDIILAERLMKYLVDLDPGVDSNYVLLANMYAA--- 430 (509)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 430 (509)
|...|...+.+++|+++|++.-...+...+..|...|.. .+++++|.+.|+++.+. .++..+..|+.+|..
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKG 108 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCC
Confidence 444444444455555555544222344555555555555 55666666666666654 344556666666666
Q ss_pred -cCCchHHHHHHHHHHhCCC
Q 010496 431 -VGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 431 -~g~~~~A~~~~~~m~~~~~ 449 (509)
.+++++|.+.|++..+.|.
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHHHHHHHCCC
Confidence 6666677777766666553
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.69 E-value=0.00021 Score=68.98 Aligned_cols=93 Identities=10% Similarity=-0.031 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhccC-------C----ChhhHHHHHHHHHhCCChHHHHHHHHHHHH-----CCC-CC
Q 010496 252 VCNTLIDLYSRCGCIEFARQVFQRMHK-------R----TLVSWNSIIVGFAVNGFVGEALEYFNSMQK-----EGF-KP 314 (509)
Q Consensus 252 ~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~-----~g~-~p 314 (509)
+++.|..+|...|++++|..++++..+ + ...+++.|...|...|++++|+.++++..+ .|. .|
T Consensus 353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp 432 (490)
T 3n71_A 353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHP 432 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 444455555555555555444444321 1 112455555555555555555555554432 121 22
Q ss_pred CH-HHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 010496 315 DG-VSFTGALTACSHAGLIEDGLRYFDIMKK 344 (509)
Q Consensus 315 ~~-~~~~~li~~~~~~~~~~~a~~~~~~~~~ 344 (509)
+. .+...+-.++...+.+++|+.+|.++++
T Consensus 433 ~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 433 ITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2334455556667777777777777764
No 204
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.69 E-value=0.00013 Score=54.45 Aligned_cols=66 Identities=12% Similarity=-0.040 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 383 NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 383 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
+...+..+...+...|++++|.+.++++++..|.++..+..++.+|.+.|++++|++.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788889999999999999999999999999999999999999999999999999999998753
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.68 E-value=0.00058 Score=48.59 Aligned_cols=82 Identities=20% Similarity=0.236 Sum_probs=56.5
Q ss_pred HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 010496 180 AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDL 259 (509)
Q Consensus 180 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (509)
...+..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...+++..+.. +.+..++..+..+
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4556667777777788888888887777653 3355666777777777788888888777777765 4556666666666
Q ss_pred HHhc
Q 010496 260 YSRC 263 (509)
Q Consensus 260 ~~~~ 263 (509)
+...
T Consensus 87 ~~~~ 90 (91)
T 1na3_A 87 KQKQ 90 (91)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 5543
No 206
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.63 E-value=0.0025 Score=62.99 Aligned_cols=170 Identities=13% Similarity=0.004 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC----------HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC-
Q 010496 196 FEEALECFREMQISGVEPDYVTIISVLNACANVGT----------LGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG- 264 (509)
Q Consensus 196 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g- 264 (509)
.++|++.++++...+ +-+...|+.--.++...|+ ++++.+.++.+++.. +.+..+|..-.-++.+.+
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccc
Confidence 456677777776642 2234445444444444444 677777777777665 566666666666666666
Q ss_pred -CHHHHHHHHHhccC---CChhhHHHHHHHHHhCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc----------
Q 010496 265 -CIEFARQVFQRMHK---RTLVSWNSIIVGFAVNG-FVGEALEYFNSMQKEGFKPDGVSFTGALTACSHA---------- 329 (509)
Q Consensus 265 -~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---------- 329 (509)
+++++++.++++.+ .+..+|+....++.+.| .++++++.++++++..+. |...|+.....+.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccccc
Confidence 55777777777653 34456666666666666 677777777777665322 455555544444332
Q ss_pred ----CCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 010496 330 ----GLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLED 370 (509)
Q Consensus 330 ----~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (509)
+.++++.+.+.++... .+-+...|..+-..+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCCccc
Confidence 4578888888888742 23367778877777777776444
No 207
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.60 E-value=0.00042 Score=54.21 Aligned_cols=91 Identities=14% Similarity=0.023 Sum_probs=64.3
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCccc
Q 010496 382 PNEVVLGSLLAACRTKG---DIILAERLMKYLVDLD-P-GVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLS 456 (509)
Q Consensus 382 p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 456 (509)
++..+...+..++++++ ++++++.+++...+.+ | .+...+..|+.+|.+.|++++|.+.++.+.+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i--------- 100 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------- 100 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH---------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc---------
Confidence 56667777777777777 5667888888877776 5 24566777788888888888888888877664
Q ss_pred EEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHcCccC
Q 010496 457 SIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVP 498 (509)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p 498 (509)
.|.........+.+.+.|++.|...
T Consensus 101 -----------------eP~n~QA~~Lk~~ie~~~~kdgl~G 125 (152)
T 1pc2_A 101 -----------------EPQNNQAKELERLIDKAMKKDGLVG 125 (152)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred -----------------CCCCHHHHHHHHHHHHHHHHhhHHH
Confidence 4555566666666667777777543
No 208
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.60 E-value=0.00037 Score=50.12 Aligned_cols=68 Identities=12% Similarity=-0.013 Sum_probs=59.3
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010496 382 PNEVVLGSLLAACRTKGD---IILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 382 p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 449 (509)
++...+..+..++...++ .++|..+++++++.+|+++.+...++..+.+.|++++|+..|+++.+...
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p 74 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND 74 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 467778888887765554 79999999999999999999999999999999999999999999988754
No 209
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.52 E-value=0.00027 Score=67.10 Aligned_cols=83 Identities=10% Similarity=0.033 Sum_probs=66.7
Q ss_pred hcCChHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCc---hHHHHH
Q 010496 364 RAGRLEDALNVVENM---------PMKPN-EVVLGSLLAACRTKGDIILAERLMKYLVD-----LDPGVDS---NYVLLA 425 (509)
Q Consensus 364 ~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~---~~~~l~ 425 (509)
..|++++|+.++++. ...|+ ..+++.|..+|...|++++|+.+++++++ .+++++. .++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356788888877664 12333 34889999999999999999999999877 4666554 488999
Q ss_pred HHHHHcCCchHHHHHHHHHHh
Q 010496 426 NMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 426 ~~~~~~g~~~~A~~~~~~m~~ 446 (509)
..|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998865
No 210
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.44 E-value=0.00072 Score=50.86 Aligned_cols=76 Identities=17% Similarity=0.052 Sum_probs=37.4
Q ss_pred HHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010496 199 ALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRM 276 (509)
Q Consensus 199 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (509)
|++.|++..+.. +.+...+..+..++...|++++|...++++++.. +.+...+..+..+|...|++++|...|++.
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444444444432 2234444455555555555555555555555543 334444555555555555555555554443
No 211
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.28 E-value=0.00089 Score=52.97 Aligned_cols=71 Identities=10% Similarity=-0.018 Sum_probs=41.6
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCH----------HHHHHHHHHHHHcCCCCcHhHHHHHHHHHH
Q 010496 192 KRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTL----------GIGLWIHRYVLKQDFKDNVKVCNTLIDLYS 261 (509)
Q Consensus 192 ~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 261 (509)
+.+++++|.+.++...+.. +.+...|..+..++...+++ ++|+..|++.++.+ |.+..+|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 3445666666666666643 33555666565565555443 46666666666665 445566666666666
Q ss_pred hcC
Q 010496 262 RCG 264 (509)
Q Consensus 262 ~~g 264 (509)
..|
T Consensus 92 ~lg 94 (158)
T 1zu2_A 92 SFA 94 (158)
T ss_dssp HHH
T ss_pred Hhc
Confidence 554
No 212
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.24 E-value=0.0014 Score=47.84 Aligned_cols=60 Identities=7% Similarity=-0.010 Sum_probs=26.5
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhccC---CChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 010496 249 NVKVCNTLIDLYSRCGCIEFARQVFQRMHK---RTLVSWNSIIVGFAVNGFVGEALEYFNSMQ 308 (509)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 308 (509)
+...+..+..+|...|++++|++.|+++.+ .+...|..+..+|...|++++|+..|++.+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334444444444444444444444444331 123344444444444444444444444433
No 213
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.23 E-value=0.0015 Score=62.05 Aligned_cols=93 Identities=10% Similarity=-0.039 Sum_probs=71.0
Q ss_pred ccCCHHHHHHHHHHhHHhcC--CCC---C-HHHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCCH-HHHHHHH
Q 010496 328 HAGLIEDGLRYFDIMKKIYR--VSP---R-IEHYGCIVDLYSRAGRLEDALNVVENM---------PMKPNE-VVLGSLL 391 (509)
Q Consensus 328 ~~~~~~~a~~~~~~~~~~~~--~~~---~-~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~ 391 (509)
..|++++|+.++++..+... +.| + ..+++.|...|...|++++|+.++++. ...|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 45788999988888764221 222 2 567888999999999999999988876 244543 4899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-----cCCCCCch
Q 010496 392 AACRTKGDIILAERLMKYLVD-----LDPGVDSN 420 (509)
Q Consensus 392 ~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 420 (509)
..|...|++++|+.+++++++ .||++|.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999877 46665543
No 214
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.20 E-value=0.0009 Score=48.64 Aligned_cols=61 Identities=21% Similarity=0.254 Sum_probs=29.6
Q ss_pred HHHHhcCChHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCch
Q 010496 360 DLYSRAGRLEDALNVVENM-PMKP-NEV-VLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSN 420 (509)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 420 (509)
..+.+.|++++|.+.+++. ...| +.. .+..+..++...|++++|.+.|+++++.+|.+...
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 3444455555555555443 2222 233 44444555555555555555555555555554443
No 215
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.14 E-value=0.0047 Score=58.65 Aligned_cols=98 Identities=14% Similarity=0.051 Sum_probs=74.5
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcC--CCCC----HHHHHHHHHHHHhcCChHHHHHHHHhC---------CCCCC-HHH
Q 010496 323 LTACSHAGLIEDGLRYFDIMKKIYR--VSPR----IEHYGCIVDLYSRAGRLEDALNVVENM---------PMKPN-EVV 386 (509)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~~~~~~~--~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~ 386 (509)
+..+.+.|++++|+.++++..+... +.|+ ..+++.|...|...|++++|+.+++++ ...|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 4445677899999999988874211 2222 567888899999999999999888775 23454 348
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCCch
Q 010496 387 LGSLLAACRTKGDIILAERLMKYLVD-----LDPGVDSN 420 (509)
Q Consensus 387 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 420 (509)
++.|...|...|++++|+.+++++++ .||++|.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 89999999999999999999999877 57776654
No 216
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.08 E-value=0.017 Score=43.42 Aligned_cols=141 Identities=12% Similarity=0.108 Sum_probs=101.2
Q ss_pred HHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 010496 291 FAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLED 370 (509)
Q Consensus 291 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (509)
+.-.|..++..+++.+.... .+..-++.+|.-....-+-+-..+.++.+-+-+.+ ..+|+...
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34467777778877777763 35556666666666666666666666666542222 23455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCc
Q 010496 371 ALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQ 450 (509)
Q Consensus 371 A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 450 (509)
....+-.++ .+...+...+..+...|+-++-.+++..+....+.++.....++.+|.+.|+..+|.+++.+..++|+.
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 555555553 344556667788889999999999999987777777889999999999999999999999999999975
No 217
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.07 E-value=0.015 Score=52.98 Aligned_cols=137 Identities=10% Similarity=0.007 Sum_probs=65.0
Q ss_pred CChhhHHHHHHHHH--hCC---ChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhc---cC--CHHHH---HHHHHHhHH
Q 010496 279 RTLVSWNSIIVGFA--VNG---FVGEALEYFNSMQKEGFKPD-GVSFTGALTACSH---AG--LIEDG---LRYFDIMKK 344 (509)
Q Consensus 279 ~~~~~~~~l~~~~~--~~~---~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~---~~--~~~~a---~~~~~~~~~ 344 (509)
.+...|...+.+.. ..+ ...+|..+|++.++. .|+ ...+..+..++.. .+ ..... ...++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 35556666555432 222 346788888888775 454 2333333333320 00 00000 111111110
Q ss_pred hcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 010496 345 IYRVSPRIEHYGCIVDLYSRAGRLEDALNVVENM-PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGV 417 (509)
Q Consensus 345 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 417 (509)
....+.+..+|..+...+...|++++|...++++ .+.|+...|..+...+.-.|+.++|.+.++++..++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0112334555555554455556666666666554 334555555555555556666666666666666665543
No 218
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.05 E-value=0.29 Score=48.44 Aligned_cols=114 Identities=10% Similarity=-0.011 Sum_probs=69.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHH----HHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHH
Q 010496 295 GFVGEALEYFNSMQKEGFKPDGVSF----TGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLED 370 (509)
Q Consensus 295 ~~~~~A~~~~~~m~~~g~~p~~~~~----~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 370 (509)
.+.+.|...+....... ..+.... ..+.......+...++...+..... . ..+.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIM-R--SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHH-T--CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccc-c--CCChHHHHHHHHHHHHCCCHHH
Confidence 37788888888876543 2233222 2222233344435556666666542 1 2333334445555567799999
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 010496 371 ALNVVENMPMKP--NEVVLGSLLAACRTKGDIILAERLMKYLVD 412 (509)
Q Consensus 371 A~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 412 (509)
|...|+.|...+ ...-..-+..++...|+.++|..+|+.+.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999885432 233344456677788999999999988875
No 219
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.03 E-value=0.055 Score=56.25 Aligned_cols=97 Identities=20% Similarity=0.202 Sum_probs=48.1
Q ss_pred HhCCCHHHHHH-HHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHH
Q 010496 160 MRRGDIESAVR-MFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIH 238 (509)
Q Consensus 160 ~~~~~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~ 238 (509)
...+++++|.+ ++..++ +......++..+.+.|.++.|+++.+.-. .-.......|+++.|.++.
T Consensus 610 ~~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~ 675 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLL 675 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHH
T ss_pred HHhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHH
Confidence 34666666666 543333 01222555566666666666665442110 0012233455555555553
Q ss_pred HHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhc
Q 010496 239 RYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRM 276 (509)
Q Consensus 239 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 276 (509)
+. ..+...|..+.+.+.+.++++.|.+.|.++
T Consensus 676 ~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 676 TD------ESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp TT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred Hh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 22 124455666666666666666666555544
No 220
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.03 E-value=0.013 Score=53.31 Aligned_cols=72 Identities=10% Similarity=0.049 Sum_probs=43.9
Q ss_pred CChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHH
Q 010496 279 RTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHY 355 (509)
Q Consensus 279 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 355 (509)
.+..+|.++...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.++++.. +.|...+|
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~ 346 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTL 346 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChH
Confidence 355566666555555677777777777766653 5655555556666666777777777766662 24544443
No 221
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=97.02 E-value=0.04 Score=57.30 Aligned_cols=129 Identities=14% Similarity=0.148 Sum_probs=66.8
Q ss_pred HHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHH
Q 010496 122 TALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALE 201 (509)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~ 201 (509)
..++..+.+.|..+.|.++.+. . ..-.......|+++.|.++.+.+. +...|..+...+.+.++++.|.+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~-----~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~ 702 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD-----Q---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIE 702 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC-----H---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCC-----c---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHH
Confidence 4455555556666666554421 1 111233445666666666665543 45566666666666666666666
Q ss_pred HHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHh
Q 010496 202 CFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQR 275 (509)
Q Consensus 202 ~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 275 (509)
+|.++.. |..+...+...|+.+...++-+.....|. ++....+|.+.|++++|.++|.+
T Consensus 703 ~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 703 AFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp HHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 6665532 22333444445555555555444444331 23333445555666665555443
No 222
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.00 E-value=0.0047 Score=44.68 Aligned_cols=54 Identities=19% Similarity=0.266 Sum_probs=31.3
Q ss_pred HHHHhccCCHHHHHHHHHHhHHhcCCCCCHH-HHHHHHHHHHhcCChHHHHHHHHhC
Q 010496 323 LTACSHAGLIEDGLRYFDIMKKIYRVSPRIE-HYGCIVDLYSRAGRLEDALNVVENM 378 (509)
Q Consensus 323 i~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~ 378 (509)
...+...|++++|...++++.+. .+.+.. .+..+..+|...|++++|.+.|++.
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 61 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA 61 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34455666666666666666632 122344 5666666666666666666666654
No 223
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.92 E-value=0.0055 Score=46.02 Aligned_cols=88 Identities=11% Similarity=-0.049 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhcC-C-CCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCccc
Q 010496 382 PNEVVLGSLLAACRTKGDIIL---AERLMKYLVDLD-P-GVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLS 456 (509)
Q Consensus 382 p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 456 (509)
|+..+-..+.+++++.++... ++.+++...+.+ | ........|+.++.+.|++++|.+.++.+.+.
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~--------- 103 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT--------- 103 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---------
Confidence 455555555666666555444 566666665554 3 13345566666677777777777777666553
Q ss_pred EEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHcC
Q 010496 457 SIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCG 495 (509)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g 495 (509)
+|.+.++...-..+.++|...|
T Consensus 104 -----------------eP~n~QA~~Lk~~i~~~i~kdG 125 (126)
T 1nzn_A 104 -----------------EPQNNQAKELERLIDKAMKKDG 125 (126)
T ss_dssp -----------------CTTCHHHHHHHHHHHHHHHHC-
T ss_pred -----------------CCCCHHHHHHHHHHHHHHHhcc
Confidence 4455555555555556666655
No 224
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.85 E-value=4.9e-05 Score=70.52 Aligned_cols=237 Identities=13% Similarity=0.155 Sum_probs=156.9
Q ss_pred ccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHH
Q 010496 45 TVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTAL 124 (509)
Q Consensus 45 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 124 (509)
+..|+.|..+..+.|+..+|++.|-+. -|...|..++.++.+. +.++.-...+...++..-+ +.+=+.|
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIkA------~Dps~y~eVi~~A~~~--~~~edLv~yL~MaRk~~ke---~~IDteL 122 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS--GNWEELVKYLQMARKKARE---SYVETEL 122 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCCC------SCCCSSSHHHHHTTTS--SCCTTHHHHHHTTSTTCCS---TTTTHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHhC------CChHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHhcc---cccHHHH
Confidence 345777888888888888777665432 2566677888888777 7777777666655554322 3444678
Q ss_pred HHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCC------------------------CCCH
Q 010496 125 LDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMP------------------------VRDA 180 (509)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------------------~~~~ 180 (509)
+-+|++.++..+-.+++. .++..-...+.+-|...|.++.|.-+|..+. ..++
T Consensus 123 i~ayAk~~rL~elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp HHHHHTSCSSSTTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred HHHHHhhCcHHHHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 888888888766443332 3454455667777778888888877777664 2277
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHH
Q 010496 181 ISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLY 260 (509)
Q Consensus 181 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 260 (509)
.+|..+-.+|...+.+.-|.-+--.++- .|| ....++..|-..|-+++.+.+++.-+... .....+|+.|.-.|
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILY 273 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 273 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHH
Confidence 8899999999999888877665444442 222 23345566778888888888888777543 56777888888777
Q ss_pred HhcCCHHHHHHHHHhccCC-----------ChhhHHHHHHHHHhCCChHHHHH
Q 010496 261 SRCGCIEFARQVFQRMHKR-----------TLVSWNSIIVGFAVNGFVGEALE 302 (509)
Q Consensus 261 ~~~g~~~~a~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~ 302 (509)
++= ++++..+.++..-.+ ....|.-++-.|.+-..++.|..
T Consensus 274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 764 455555555433221 34467777777777777775543
No 225
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.71 E-value=0.042 Score=41.98 Aligned_cols=92 Identities=7% Similarity=-0.035 Sum_probs=66.7
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCccc
Q 010496 381 KPNEVVLGSLLAACRTKGD---IILAERLMKYLVDLDPG-VDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGLS 456 (509)
Q Consensus 381 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~ 456 (509)
.|+..+--.+.+++.++.+ ..+++.+++.+....|. .......|+.++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~--------- 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--------- 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT---------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc---------
Confidence 4666666667777777664 45677788888777665 3445777888888888888888888888774
Q ss_pred EEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHcCccC
Q 010496 457 SIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGYVP 498 (509)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~~p 498 (509)
.|.+.++...-+.+.++|...|...
T Consensus 107 -----------------eP~n~QA~~Lk~~Ie~~i~kdGliG 131 (144)
T 1y8m_A 107 -----------------ERNNKQVGALKSMVEDKIQKETLKG 131 (144)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHHHTTTTT
T ss_pred -----------------CCCcHHHHHHHHHHHHHHHHhchhh
Confidence 5556666677777778888887653
No 226
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.71 E-value=0.24 Score=43.31 Aligned_cols=79 Identities=9% Similarity=-0.108 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHcCCCCC---HhHHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhc-CCHH
Q 010496 197 EEALECFREMQISGVEPD---YVTIISVLNACANV-----GTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRC-GCIE 267 (509)
Q Consensus 197 ~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~ 267 (509)
..|...+++..+. .|+ ...|..+...|.+. |+.++|.++|++.++.+-.-+..++....+.++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3444445555442 343 33455555555442 55555555555555544111244444445555442 5555
Q ss_pred HHHHHHHhcc
Q 010496 268 FARQVFQRMH 277 (509)
Q Consensus 268 ~a~~~~~~~~ 277 (509)
.+.+.+++..
T Consensus 258 ~a~~~L~kAL 267 (301)
T 3u64_A 258 GFDEALDRAL 267 (301)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.52 E-value=0.019 Score=42.01 Aligned_cols=73 Identities=22% Similarity=0.080 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHhC-C--------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHH
Q 010496 352 IEHYGCIVDLYSRAGRLEDALNVVENM-P--------MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYV 422 (509)
Q Consensus 352 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~--------~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 422 (509)
...+..+...+.+.|++..|..+++.. . -.+...++..|..++.+.|+++.|...++++++..|.++.+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 334445566666666666666666554 0 1134567888888999999999999999999999998766544
Q ss_pred HH
Q 010496 423 LL 424 (509)
Q Consensus 423 ~l 424 (509)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 44
No 228
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.46 E-value=0.029 Score=40.03 Aligned_cols=68 Identities=12% Similarity=0.059 Sum_probs=51.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---hHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 349 SPRIEHYGCIVDLYSRAGR---LEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
+.+...+..+..++...++ .++|..++++. ...| +......+...+...|++++|+..|+++++..|.
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3456667777777754444 68888888776 4555 4667777788888999999999999999988887
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.27 E-value=0.33 Score=38.90 Aligned_cols=100 Identities=10% Similarity=0.128 Sum_probs=47.2
Q ss_pred hCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHH
Q 010496 161 RRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRY 240 (509)
Q Consensus 161 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 240 (509)
+.|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... +..+.-.|.-.|+.+...++-+.
T Consensus 17 ~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla~i 85 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQNI 85 (177)
T ss_dssp HTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHHHH
Confidence 344455554444433 2344555555555555555555555554432 22233334444554444444444
Q ss_pred HHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc
Q 010496 241 VLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH 277 (509)
Q Consensus 241 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 277 (509)
....| . ++.....+...|+++++.++|.+..
T Consensus 86 A~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 86 AQTRE-D-----FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 43333 1 3333344445566666666555443
No 230
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=96.19 E-value=2.5e-05 Score=72.42 Aligned_cols=236 Identities=11% Similarity=0.103 Sum_probs=127.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC
Q 010496 151 TWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGT 230 (509)
Q Consensus 151 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~ 230 (509)
+|..+..+..+.+++.+|++.|- +..|+..|..+|....+.|.+++-+.++...++..-.|. .=+.|+-+|++.++
T Consensus 56 VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk~~r 131 (624)
T 3lvg_A 56 VWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALAKTNR 131 (624)
T ss_dssp CSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHTSCS
T ss_pred HHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHhhCc
Confidence 34444555555554444444432 222344444555555555555555555544443322222 22244445555554
Q ss_pred HHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc------------------------CCChhhHHH
Q 010496 231 LGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH------------------------KRTLVSWNS 286 (509)
Q Consensus 231 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~------------------------~~~~~~~~~ 286 (509)
+.+.++++ -.||..-...+.+-|...|.++.|.-+|..+. ..++.||..
T Consensus 132 L~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKe 204 (624)
T 3lvg_A 132 LAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 204 (624)
T ss_dssp SSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHH
T ss_pred HHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence 43322222 12333333444444444444444444443332 136778988
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC
Q 010496 287 IIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAG 366 (509)
Q Consensus 287 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 366 (509)
+-.+|...+.+.-|.-.--.++-. || ....++..|-..|.+++-+.+++.... .-......|+.|.-.|++-
T Consensus 205 V~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglg--lErAHmGmFTELaILYsKY- 276 (624)
T 3lvg_A 205 VCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALG--LERAHMGMFTELAILYSKF- 276 (624)
T ss_dssp HTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTT--STTCCHHHHHHHHHHHHSS-
T ss_pred HHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHhc-
Confidence 888999888887766554444422 22 122355667788888888888887761 2234677788887777765
Q ss_pred ChHHHHHHHHhC----CCC------CCHHHHHHHHHHHHhcCCHHHHHH
Q 010496 367 RLEDALNVVENM----PMK------PNEVVLGSLLAACRTKGDIILAER 405 (509)
Q Consensus 367 ~~~~A~~~~~~~----~~~------p~~~~~~~l~~~~~~~g~~~~a~~ 405 (509)
++++.++.++.. .+. -....|.-++..|....+++.|..
T Consensus 277 ~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 277 KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 666666666554 111 134467777777877777776643
No 231
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.04 E-value=0.023 Score=49.60 Aligned_cols=86 Identities=13% Similarity=0.105 Sum_probs=67.1
Q ss_pred hHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHc-CCchH
Q 010496 368 LEDALNVVENM-PMKPN---EVVLGSLLAACRT-----KGDIILAERLMKYLVDLDPG-VDSNYVLLANMYAAV-GKWDG 436 (509)
Q Consensus 368 ~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~~~ 436 (509)
...|...+++. .+.|+ ...|..|...|.. -|+.++|.+.|++++++.|. +..++..++..+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34556666554 56676 4477777777877 48999999999999999997 488899999999885 99999
Q ss_pred HHHHHHHHHhCCCccCC
Q 010496 437 AGKIRRTMKGRGIQKKP 453 (509)
Q Consensus 437 A~~~~~~m~~~~~~~~~ 453 (509)
|.+.+++.........|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999999887655333
No 232
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.04 E-value=0.03 Score=43.73 Aligned_cols=86 Identities=12% Similarity=0.006 Sum_probs=56.4
Q ss_pred HHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcC---ChHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHH
Q 010496 333 EDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAG---RLEDALNVVENM-PMK-P--NEVVLGSLLAACRTKGDIILAER 405 (509)
Q Consensus 333 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a~~ 405 (509)
..+.+.|.+..+ .+ .++..+...+..++++.+ +.++++.+++.. ... | +...+..|.-++.+.|++++|.+
T Consensus 15 ~~~~~~y~~e~~-~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 15 LKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHH-TT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 344455555442 12 256666666666677766 445677666665 222 4 23455667778899999999999
Q ss_pred HHHHHHhcCCCCCch
Q 010496 406 LMKYLVDLDPGVDSN 420 (509)
Q Consensus 406 ~~~~~~~~~~~~~~~ 420 (509)
.++.+++.+|++..+
T Consensus 93 y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCCCHHH
Confidence 999999999987543
No 233
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.00 E-value=0.038 Score=41.63 Aligned_cols=90 Identities=7% Similarity=-0.032 Sum_probs=60.5
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCC-CCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcc
Q 010496 380 MKPNEVVLGSLLAACRTKGD---IILAERLMKYLVDLDPG-VDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGL 455 (509)
Q Consensus 380 ~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 455 (509)
-.|+..+--.+.++++++.+ ..+++.+++.+.+.+|. ....+..|+.++.+.|++++|.+..+.+.+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~-------- 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH-------- 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--------
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh--------
Confidence 34566666666667766654 44677777777776664 3456777888888888888888888877664
Q ss_pred cEEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHcC
Q 010496 456 SSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCG 495 (509)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g 495 (509)
.|.+..+...-..+.++|...|
T Consensus 108 ------------------eP~N~QA~~Lk~~Ie~ki~kd~ 129 (134)
T 3o48_A 108 ------------------ERNNKQVGALKSMVEDKIQKEE 129 (134)
T ss_dssp ------------------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCCCHHHHHHHHHHHHHHHhhc
Confidence 4555666666666666666554
No 234
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.99 E-value=0.46 Score=38.07 Aligned_cols=104 Identities=15% Similarity=0.153 Sum_probs=79.1
Q ss_pred HHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHH
Q 010496 124 LLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECF 203 (509)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 203 (509)
-+....+.|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|..... +..+.-.|.-.|+.+...++-
T Consensus 11 rF~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 11 RFDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHH
Confidence 445667899999999998877 4678899999999999999999999998764 445666677788887777666
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHH
Q 010496 204 REMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRY 240 (509)
Q Consensus 204 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~ 240 (509)
+.....| -++....++.-.|+++++.++|.+
T Consensus 84 ~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 84 NIAQTRE------DFGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6665554 244555566677888888777643
No 235
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.82 E-value=0.1 Score=38.06 Aligned_cols=67 Identities=12% Similarity=-0.018 Sum_probs=45.3
Q ss_pred CHhHHHHHHHHHHHcCChHHHHHHHHHHHHcC------CCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 010496 179 DAISWTALLNGFVKRGYFEEALECFREMQISG------VEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQD 245 (509)
Q Consensus 179 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~------~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 245 (509)
+..-+..+...+.+.|++..|...|+...+.- -.+....+..+..++.+.|+++.|..+++++.+..
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 34455667777778888888888887766531 12335566677777777777777777777777654
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=95.79 E-value=0.2 Score=37.79 Aligned_cols=116 Identities=16% Similarity=0.068 Sum_probs=58.1
Q ss_pred hcCCchHHHHHHHhcCCC-ChHHHHHHHHHHHhCCCHHHHHHHHhcCCC---------------------CCHhHHHHHH
Q 010496 130 KFGRMDLATVVFDAMRVK-SSFTWNAMIDGYMRRGDIESAVRMFDEMPV---------------------RDAISWTALL 187 (509)
Q Consensus 130 ~~g~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---------------------~~~~~~~~li 187 (509)
-.|..++..++..+...+ +..-||.+|.-....-+-+-..++++.+.. .+...++..+
T Consensus 19 ldG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~~se~vd~AL 98 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVNKAL 98 (172)
T ss_dssp HTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcchHHHHHHHH
Confidence 346666666666665533 333444444443333333333333333321 1233344445
Q ss_pred HHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 010496 188 NGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDF 246 (509)
Q Consensus 188 ~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 246 (509)
......|+-++-.+++..+... .+|++.....+..+|.+.|+..++.+++.++-+.|+
T Consensus 99 d~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 99 DILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 5555566666665555554332 255555555566666666666666666666655553
No 237
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.53 E-value=0.37 Score=36.15 Aligned_cols=87 Identities=13% Similarity=0.012 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHH
Q 010496 332 IEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLED---ALNVVENM-PMK-P--NEVVLGSLLAACRTKGDIILAE 404 (509)
Q Consensus 332 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~g~~~~a~ 404 (509)
...+.+.|..... .+ .++..+-..+..++.+...... ++.+++.+ ... | .......|.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~-~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKA-AG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHH-HS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhc-cC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3444455554442 12 2555666666667777665554 66666665 222 3 2224455666788999999999
Q ss_pred HHHHHHHhcCCCCCch
Q 010496 405 RLMKYLVDLDPGVDSN 420 (509)
Q Consensus 405 ~~~~~~~~~~~~~~~~ 420 (509)
+.++.+++..|.+..+
T Consensus 95 ~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHhCCCCHHH
Confidence 9999999999987654
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.24 E-value=5.9 Score=41.02 Aligned_cols=23 Identities=9% Similarity=-0.036 Sum_probs=14.3
Q ss_pred hHHHHHHHHcCCChhHHHHHHHH
Q 010496 48 WTSSISRHCRSGRIAEAALEFTR 70 (509)
Q Consensus 48 ~~~li~~~~~~g~~~~A~~~~~~ 70 (509)
|..+++...+.++.+.+.++|..
T Consensus 233 y~~a~~~ai~LnD~~li~~if~~ 255 (963)
T 4ady_A 233 YLTLNKVVVNLNDAGLALQLFKK 255 (963)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 55556666666666666666665
No 239
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.17 E-value=0.63 Score=35.93 Aligned_cols=60 Identities=13% Similarity=0.035 Sum_probs=40.1
Q ss_pred cCChHHHHHHHHhC-C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHH
Q 010496 365 AGRLEDALNVVENM-P--MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLA 425 (509)
Q Consensus 365 ~g~~~~A~~~~~~~-~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 425 (509)
.++.++|.++|+.+ . -+- ...|......-.++|+...|.+++.+++...|.+...+...+
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~ 135 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL 135 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence 35666666666665 1 111 556666666677889999999999999888887654444333
No 240
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=94.10 E-value=0.12 Score=39.80 Aligned_cols=55 Identities=9% Similarity=-0.011 Sum_probs=45.4
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010496 395 RTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 395 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 449 (509)
...++.++|.++|+.++.....-...|...+..-.++|+.+.|.+++.+.+..+.
T Consensus 71 ~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 71 KAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 3447999999999999887444455688888888999999999999999888654
No 241
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.45 E-value=4.1 Score=36.48 Aligned_cols=24 Identities=17% Similarity=0.091 Sum_probs=15.9
Q ss_pred chHHHHHHHHcCCChhHHHHHHHH
Q 010496 47 QWTSSISRHCRSGRIAEAALEFTR 70 (509)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~ 70 (509)
.|.++..-|.+.+++++|++++..
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~ 60 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILAS 60 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHH
Confidence 345566667777777777776544
No 242
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.35 E-value=4.1 Score=36.20 Aligned_cols=52 Identities=13% Similarity=0.063 Sum_probs=26.9
Q ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHc---CChHHH
Q 010496 148 SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKR---GYFEEA 199 (509)
Q Consensus 148 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---~~~~~A 199 (509)
++..+..+...|.+.|++.+|+..|-.-...+...+..++.-+... |...++
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~e~ 187 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDSTV 187 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcchH
Confidence 4555566666666666666666655422222444554444444444 444443
No 243
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=93.19 E-value=3.8 Score=38.78 Aligned_cols=185 Identities=9% Similarity=0.028 Sum_probs=115.8
Q ss_pred cCChHHHHHHHHHHHHc-----CCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHH----HHhc
Q 010496 193 RGYFEEALECFREMQIS-----GVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDL----YSRC 263 (509)
Q Consensus 193 ~~~~~~A~~~~~~m~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~ 263 (509)
.|+++.|++-+..+.+. +..........++..|...++++...+.+..+.+..-.. ......+++. ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 36788898887776543 234456667788999999999999888877666442122 2222333332 2223
Q ss_pred CC--HHHHHHHHHhccC---CC--h-----hhHHHHHHHHHhCCChHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHH
Q 010496 264 GC--IEFARQVFQRMHK---RT--L-----VSWNSIIVGFAVNGFVGEALEYFNSMQKE--GFKPD---GVSFTGALTAC 326 (509)
Q Consensus 264 g~--~~~a~~~~~~~~~---~~--~-----~~~~~l~~~~~~~~~~~~A~~~~~~m~~~--g~~p~---~~~~~~li~~~ 326 (509)
.. .+.-..+.+.... .- . .....|...+...|++.+|.+++..+... |.... ...+...++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 32 2223333333321 11 1 13356778888999999999999998753 22222 23566677788
Q ss_pred hccCCHHHHHHHHHHhHHh-cCC--CCC--HHHHHHHHHHHHhcCChHHHHHHHHhC
Q 010496 327 SHAGLIEDGLRYFDIMKKI-YRV--SPR--IEHYGCIVDLYSRAGRLEDALNVVENM 378 (509)
Q Consensus 327 ~~~~~~~~a~~~~~~~~~~-~~~--~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~ 378 (509)
...+++..|..+++++... ... .|+ ...|...+..+...+++.+|.+.|.++
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8999999999999887421 111 222 334566777778888998887776654
No 244
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.08 E-value=0.19 Score=46.85 Aligned_cols=70 Identities=19% Similarity=0.083 Sum_probs=57.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh-----CCCccCCcc
Q 010496 386 VLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG-----RGIQKKPGL 455 (509)
Q Consensus 386 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~~~~~~ 455 (509)
....++..+...|++.++...+..+...+|-+...+..++.+|.+.|+..+|++.|+++.+ .|+.|.+.+
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 3445667778889999999999999998888888899999999999999999999887754 488776653
No 245
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.92 E-value=0.36 Score=48.79 Aligned_cols=54 Identities=17% Similarity=0.049 Sum_probs=48.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHH
Q 010496 391 LAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTM 444 (509)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 444 (509)
...|...|+++-|+++.++++..-|..-.+|..|+.+|...|+++.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 345677899999999999999999998889999999999999999999988877
No 246
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=92.82 E-value=10 Score=39.32 Aligned_cols=149 Identities=15% Similarity=0.082 Sum_probs=68.0
Q ss_pred HHhCCCHHHHHHHHhcCCCC-C--HhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHH--HHHHHHHccCCHHH
Q 010496 159 YMRRGDIESAVRMFDEMPVR-D--AISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTII--SVLNACANVGTLGI 233 (509)
Q Consensus 159 ~~~~~~~~~A~~~~~~~~~~-~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~~~~~~ 233 (509)
+.-.|+-+....++..+... + ..-.-++.-++...|+.+.+..+++.+.... .|....-. .+.-+|+..|+...
T Consensus 500 ~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~a 578 (963)
T 4ady_A 500 MLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSA 578 (963)
T ss_dssp HTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHH
T ss_pred hcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHH
Confidence 34556655555555543211 2 2222233334445677777777766666531 22221111 22334566677666
Q ss_pred HHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccC-CChhhHHHHHHH--HHhCCC-hHHHHHHHHHHHH
Q 010496 234 GLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHK-RTLVSWNSIIVG--FAVNGF-VGEALEYFNSMQK 309 (509)
Q Consensus 234 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~l~~~--~~~~~~-~~~A~~~~~~m~~ 309 (509)
..+++..+.... ..++.-...+.-+....|+.+.+.+++..+.+ .|..+......+ ....|. ..++++++..+..
T Consensus 579 Iq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 579 VKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 666776666532 22222222233333344555555555554432 233332222222 222332 2456666666654
No 247
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=92.80 E-value=1.2 Score=31.57 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=52.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 010496 296 FVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDL 361 (509)
Q Consensus 296 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 361 (509)
+.-+..+-++.+....+.|++....+.+++|.+.+++..|.++++-++.+.+.. ..+|..+++-
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~--~~iY~~~lqE 88 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQE 88 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--hhhHHHHHHH
Confidence 566778888888888899999999999999999999999999999998655544 4567766643
No 248
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.75 E-value=12 Score=37.82 Aligned_cols=81 Identities=6% Similarity=-0.086 Sum_probs=60.1
Q ss_pred CCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC---------CHHHHHHHHHhcc------
Q 010496 213 PDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG---------CIEFARQVFQRMH------ 277 (509)
Q Consensus 213 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---------~~~~a~~~~~~~~------ 277 (509)
-+..-|..|.....+.+.+++|.+.|+..+.. ..+...+..|++.|.+.+ +.+..+...-++.
T Consensus 611 ks~lEWEiLGlla~RL~h~~EA~~a~~~~l~~--RFs~ka~~kLLeiY~~~~~~~~~~~~~d~~~il~~~ikl~~w~~Rw 688 (754)
T 4gns_B 611 HSGLEWELLGLIMLRTWHWEDAVACLRTSIVA--RFDPVSCQQLLKIYLQPPKNIQEVTLLDTDTIISLLIKKISYDCRY 688 (754)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHSS--SCCHHHHHHHHHHHHSCCSSSCSCCSSCHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ccCHHHHHHHHHHHHhcCccccccccCCHHHHHHHHHHHHHHhhhc
Confidence 34556889999999999999999999999975 578899999999999877 6777666555443
Q ss_pred --CCChhhHHHHHHHHHhCC
Q 010496 278 --KRTLVSWNSIIVGFAVNG 295 (509)
Q Consensus 278 --~~~~~~~~~l~~~~~~~~ 295 (509)
+-.+.....+...+.+.|
T Consensus 689 Y~efs~~l~~~l~kLi~~~G 708 (754)
T 4gns_B 689 YNYCQIFNLQLLEKLCNELG 708 (754)
T ss_dssp TBCCCHHHHHHHHHHHHHHC
T ss_pred ccccCHHHHHHHHHHHHHhC
Confidence 234444555555555544
No 249
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=91.41 E-value=12 Score=37.04 Aligned_cols=362 Identities=10% Similarity=0.027 Sum_probs=189.4
Q ss_pred HHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCc
Q 010496 55 HCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRM 134 (509)
Q Consensus 55 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 134 (509)
..+.|++..+..+...+...-+.|- ..|..+...+... ...++...+.+..-.|-....-..-+..+.+.+++
T Consensus 16 a~~~~~~~~~~~l~~~l~~~pL~~y-l~y~~l~~~l~~~------~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w 88 (618)
T 1qsa_A 16 AWDNRQMDVVEQMMPGLKDYPLYPY-LEYRQITDDLMNQ------PAVTVTNFVRANPTLPPARTLQSRFVNELARREDW 88 (618)
T ss_dssp HHHTTCHHHHHHHSGGGTTSTTHHH-HHHHHHHHTGGGC------CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHCCCHHHHHHHHHhhcCCCcHHH-HHHHHHHhCcccC------CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCH
Confidence 4567888888888776654323222 2455555443221 12255555555533333234455566778888999
Q ss_pred hHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcC---CCCCHhHHHHHHHHHHHcCChHH--HHHHHHHHHHc
Q 010496 135 DLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEM---PVRDAISWTALLNGFVKRGYFEE--ALECFREMQIS 209 (509)
Q Consensus 135 ~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~--A~~~~~~m~~~ 209 (509)
...+..+.. ...+...-.....+....|+..+|......+ ....+..+..++..+.+.|.... ...-++.+...
T Consensus 89 ~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~ 167 (618)
T 1qsa_A 89 RGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKA 167 (618)
T ss_dssp HHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred HHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHC
Confidence 988887766 4345666666777888889866555544332 12246677778888777665433 33334444443
Q ss_pred C-----------CCCCHhHH-HHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHh---HHHHHHHHHHhcCCHHHHHHHHH
Q 010496 210 G-----------VEPDYVTI-ISVLNACANVGTLGIGLWIHRYVLKQDFKDNVK---VCNTLIDLYSRCGCIEFARQVFQ 274 (509)
Q Consensus 210 ~-----------~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~ 274 (509)
| +.++...+ ..++........+ .... .. ..++.. .+...+.-+.+ .+.+.|...+.
T Consensus 168 ~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p~~~---~~~~----~~-~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~ 238 (618)
T 1qsa_A 168 GNTGLVTVLAGQMPADYQTIASAIISLANNPNTV---LTFA----RT-TGATDFTRQMAAVAFASVAR-QDAENARLMIP 238 (618)
T ss_dssp TCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGH---HHHH----HH-SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHH
T ss_pred CCHHHHHHHHHhCCHHHHHHHHHHHHHHhChHhH---HHHH----hc-cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHH
Confidence 3 11111111 1111111111111 1111 10 122221 22222333333 47889999997
Q ss_pred hccC---CChh----hHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcC
Q 010496 275 RMHK---RTLV----SWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYR 347 (509)
Q Consensus 275 ~~~~---~~~~----~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~ 347 (509)
...+ -+.. .+..+...+...+...++...+...... ..+.....-.+....+.|+++.|...|+.|.. .
T Consensus 239 ~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~--~ 314 (618)
T 1qsa_A 239 SLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPM--E 314 (618)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCT--T
T ss_pred hhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHccc--c
Confidence 7642 1222 2223333333445356777777776554 33444444444555677999999999999873 1
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc-----hHH
Q 010496 348 VSPRIEHYGCIVDLYSRAGRLEDALNVVENMPMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS-----NYV 422 (509)
Q Consensus 348 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~ 422 (509)
.........-+..++...|+.++|..+|..+.-..+ .|..+. ..+.|..-.. . .....+.... .-.
T Consensus 315 ~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~--fYg~lA--a~~Lg~~~~~-~----~~~~~~~~~~~~~~~~~~ 385 (618)
T 1qsa_A 315 AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRG--FYPMVA--AQRIGEEYEL-K----IDKAPQNVDSALTQGPEM 385 (618)
T ss_dssp GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS--HHHHHH--HHHTTCCCCC-C----CCCCCSCCCCHHHHSHHH
T ss_pred ccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCC--hHHHHH--HHHcCCCCCC-C----CCCCChhHHhhhccChHH
Confidence 112344445567788899999999999998842222 233332 2233321000 0 0000011111 122
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHh
Q 010496 423 LLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 423 ~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
.-+..+...|....|...+..+.+
T Consensus 386 ~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 386 ARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCChhhHHHHHHHHHh
Confidence 345567778888888877776654
No 250
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=91.04 E-value=13 Score=40.16 Aligned_cols=118 Identities=10% Similarity=0.023 Sum_probs=64.9
Q ss_pred cHhHHHHHHHHHHhcCCHHHHHHHHHhccCC--------------------------ChhhHHHHHHHHHhCCChHHHHH
Q 010496 249 NVKVCNTLIDLYSRCGCIEFARQVFQRMHKR--------------------------TLVSWNSIIVGFAVNGFVGEALE 302 (509)
Q Consensus 249 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------------------------~~~~~~~l~~~~~~~~~~~~A~~ 302 (509)
+......+..+|...|++++|.++|++.... -..-|..++..|.+.+.++.+.+
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~ 920 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALE 920 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4444455667777777777877777765410 00124556666666666666666
Q ss_pred HHHHHHHCCCCCCH----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCChH
Q 010496 303 YFNSMQKEGFKPDG----VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGRLE 369 (509)
Q Consensus 303 ~~~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 369 (509)
+-...++....-+. ..|..+.+++...|++++|...+-.+.. .. --......|+..++..|..+
T Consensus 921 fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd-~~--~r~~cLr~LV~~lce~~~~~ 988 (1139)
T 4fhn_B 921 FSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST-TP--LKKSCLLDFVNQLTKQGKIN 988 (1139)
T ss_dssp HHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH-SS--SCHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC-HH--HHHHHHHHHHHHHHhCCChh
Confidence 66555543211111 1355566666666777776666655542 11 22445555665555555443
No 251
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=90.59 E-value=9.1 Score=34.25 Aligned_cols=181 Identities=10% Similarity=0.023 Sum_probs=110.5
Q ss_pred HHHHhcCCc---hHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHH
Q 010496 126 DMYAKFGRM---DLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALEC 202 (509)
Q Consensus 126 ~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~ 202 (509)
......|++ =+|.+. |.++..-|.+.+++++|.+++.. -...+.+.|+...|.++
T Consensus 20 ~~~I~~G~y~~~YEAHQ~-----------~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL 77 (336)
T 3lpz_A 20 QRRIAEGQPEEQYEAAQE-----------TRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDL 77 (336)
T ss_dssp HHHHHHCCHHHHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHH
T ss_pred HHHHhCCCCccccHHHHH-----------HHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHH
Confidence 334556777 566654 55677778889999999988643 34456677777666555
Q ss_pred H----HHHHHcCCCCCHhHHHHHHHHHHccCCHH-HHHHHHHHHH----HcC--CCCcHhHHHHHHHHHHhcCCHHHHHH
Q 010496 203 F----REMQISGVEPDYVTIISVLNACANVGTLG-IGLWIHRYVL----KQD--FKDNVKVCNTLIDLYSRCGCIEFARQ 271 (509)
Q Consensus 203 ~----~~m~~~~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~ 271 (509)
- +-+.+.++++|......++..+.....-+ .-..+.+.++ +.| ..-+......+...|.+.+++.+|..
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 4 55566678888888888887776655321 1122333333 333 33567888899999999999999998
Q ss_pred HHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhH
Q 010496 272 VFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMK 343 (509)
Q Consensus 272 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~ 343 (509)
.|-.-.++....+..++.-+...+... .++...-..++. |.-.++...|..++....
T Consensus 158 H~ilg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 158 HLVLGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVLP-YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHTTSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Confidence 884322222345544443333322211 122333333443 555678888888776655
No 252
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=90.33 E-value=9.3 Score=33.92 Aligned_cols=182 Identities=11% Similarity=0.066 Sum_probs=112.4
Q ss_pred HHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHH---
Q 010496 126 DMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALEC--- 202 (509)
Q Consensus 126 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~--- 202 (509)
......|++=+|.+. |.++..-|.+.+++++|.+++.. -...+.+.|+...|.++
T Consensus 21 ~~~I~~G~yYEAhQ~-----------~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~l 78 (312)
T 2wpv_A 21 ENKIKAGDYYEAHQT-----------LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFY 78 (312)
T ss_dssp HHHHHHTCHHHHHHH-----------HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhhccChHHHHHH-----------HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHH
Confidence 344556677677664 56677888899999999998753 34556777887766664
Q ss_pred -HHHHHHcCCCCCHhHHHHHHHHHHccCC-----HHHHHHHHHHHHHcC--CCCcHhHHHHHHHHHHhcCCHHHHHHHHH
Q 010496 203 -FREMQISGVEPDYVTIISVLNACANVGT-----LGIGLWIHRYVLKQD--FKDNVKVCNTLIDLYSRCGCIEFARQVFQ 274 (509)
Q Consensus 203 -~~~m~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 274 (509)
++-..+.+++++......++..+..... .+-..+......+.| ...++..+..+...|.+.|++.+|...|-
T Consensus 79 lvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 79 LLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4555666788888888888877755332 122233333333433 22477889999999999999999998876
Q ss_pred hccCCChhhHHHHHHHHHhC---CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHH
Q 010496 275 RMHKRTLVSWNSIIVGFAVN---GFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKK 344 (509)
Q Consensus 275 ~~~~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~ 344 (509)
.-...+...+..++.-+... |...++ +...-..++. |.-.|+...|..++....+
T Consensus 159 ~~~~~s~~~~a~~l~~w~~~~~~~~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 159 LGTHDSMIKYVDLLWDWLCQVDDIEDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIFLE 216 (312)
T ss_dssp TSCHHHHHHHHHHHHHHHHHTTCCCHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHH
T ss_pred hCCCccHHHHHHHHHHHHHhcCCCCcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHH
Confidence 33322444444444333322 222221 1122222332 4456888888888887653
No 253
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=90.32 E-value=6.8 Score=32.32 Aligned_cols=46 Identities=17% Similarity=0.182 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCC
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRG 163 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~ 163 (509)
..+....+..+.+.|+.+....+.+.+..++..+-...+.++.+.+
T Consensus 33 ~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~ 78 (211)
T 3ltm_A 33 YYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIG 78 (211)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhC
Confidence 3444444444444444333333333333333333333333333333
No 254
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=90.10 E-value=9.8 Score=41.10 Aligned_cols=145 Identities=8% Similarity=0.047 Sum_probs=85.3
Q ss_pred HHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHc--------------------C--C
Q 010496 154 AMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQIS--------------------G--V 211 (509)
Q Consensus 154 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--------------------~--~ 211 (509)
.++..+.+.+.++.|.++...... ++.....+..++...|++++|.++|++.-.. . .
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~ 895 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ 895 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence 344555556666666655544433 3333344556666666666666666553110 0 0
Q ss_pred CCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcH----hHHHHHHHHHHhcCCHHHHHHHHHhccCC--ChhhHH
Q 010496 212 EPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNV----KVCNTLIDLYSRCGCIEFARQVFQRMHKR--TLVSWN 285 (509)
Q Consensus 212 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~ 285 (509)
..-..-|.-++..+.+.+.++.+.++-..+++...+.+. ..|..+.+.+...|++++|...+-.+... -.....
T Consensus 896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr 975 (1139)
T 4fhn_B 896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLL 975 (1139)
T ss_dssp CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHH
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHH
Confidence 111234666777777788888888777776665322221 25677788888888888888887766532 234566
Q ss_pred HHHHHHHhCCChHH
Q 010496 286 SIIVGFAVNGFVGE 299 (509)
Q Consensus 286 ~l~~~~~~~~~~~~ 299 (509)
.++..+|..|..+.
T Consensus 976 ~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 976 DFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHHHCCHHH
T ss_pred HHHHHHHhCCChhh
Confidence 67777776666443
No 255
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=89.78 E-value=3 Score=31.37 Aligned_cols=64 Identities=17% Similarity=0.205 Sum_probs=52.3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHH
Q 010496 296 FVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDL 361 (509)
Q Consensus 296 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 361 (509)
+.-+..+-++.+....+.|++......+++|.+.+++..|.++|+-++.+.+.. ..+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~--~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPH--KEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTC--TTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCc--hhhHHHHHHH
Confidence 455677788888888899999999999999999999999999999998755443 5567776643
No 256
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=89.15 E-value=8.4 Score=31.73 Aligned_cols=54 Identities=15% Similarity=0.124 Sum_probs=22.4
Q ss_pred HhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCC
Q 010496 142 DAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGY 195 (509)
Q Consensus 142 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 195 (509)
+.+..++...-...+..+.+.+..+....+.+.+..++...-...+.++.+.+.
T Consensus 26 ~~L~~~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 26 KNLQDDSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 79 (211)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred HHHcCCCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 333334444444444444444443333333333334444444444444444443
No 257
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=89.14 E-value=2.9 Score=32.92 Aligned_cols=21 Identities=14% Similarity=0.444 Sum_probs=11.6
Q ss_pred HHHHHHhcCChHHHHHHHHhC
Q 010496 358 IVDLYSRAGRLEDALNVVENM 378 (509)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~~ 378 (509)
+..+|.+.+++++|+.+++.+
T Consensus 128 ia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 128 LAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHHHHCCHHHHHHHHhcC
Confidence 445555555555555555555
No 258
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=88.77 E-value=15 Score=33.98 Aligned_cols=162 Identities=10% Similarity=-0.004 Sum_probs=78.0
Q ss_pred hHHHHHHHHHHccCCHHHHHHHHHHHHHc-C-C--CCcHhHHHHHHHHHHhcC-CHHHHHHHHHhccC---CChhhH---
Q 010496 216 VTIISVLNACANVGTLGIGLWIHRYVLKQ-D-F--KDNVKVCNTLIDLYSRCG-CIEFARQVFQRMHK---RTLVSW--- 284 (509)
Q Consensus 216 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~-~--~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~---~~~~~~--- 284 (509)
.....|...|.+.|+.++..+++...... + + .........+++.+.... ..+.-.++..+..+ ..-.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666777777777777666654422 0 0 112234455666655532 23333333332221 111222
Q ss_pred ---HHHHHHHHhCCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHhccCCHHHHHHHHHHhHHhcC-CCCCHHHH
Q 010496 285 ---NSIIVGFAVNGFVGEALEYFNSMQKEGFKPDG-----VSFTGALTACSHAGLIEDGLRYFDIMKKIYR-VSPRIEHY 355 (509)
Q Consensus 285 ---~~l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~-----~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~ 355 (509)
..++..|...|++.+|.+++.++.+.--..|. ..+..-+..|...+++.++...+........ +.+++...
T Consensus 100 ~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~ 179 (394)
T 3txn_A 100 SLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQ 179 (394)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHH
Confidence 14566677777777777777766653111121 2233444556666777777777766653221 11222211
Q ss_pred H----HHHHHHH-hcCChHHHHHHHHh
Q 010496 356 G----CIVDLYS-RAGRLEDALNVVEN 377 (509)
Q Consensus 356 ~----~li~~~~-~~g~~~~A~~~~~~ 377 (509)
. .-...+. ..++|..|...|-+
T Consensus 180 a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 180 GALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 1 1112234 56667766666644
No 259
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=88.73 E-value=4.8 Score=28.35 Aligned_cols=61 Identities=16% Similarity=0.182 Sum_probs=47.7
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHH
Q 010496 156 IDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTII 219 (509)
Q Consensus 156 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 219 (509)
+..+...|++++|..+.+.+..||...|-+|.. .+.|..+++...+..+..+| .|....|.
T Consensus 46 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 46 ISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 445778999999999999999889888876654 57888888888888888776 55554443
No 260
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=88.50 E-value=3.3 Score=32.62 Aligned_cols=69 Identities=6% Similarity=-0.052 Sum_probs=42.9
Q ss_pred CCCCccchHHHHHHHHcCCChhHHHHHHHHHhhCC-CCCCc-------ccHHHHHHhhcCCCccchhHHHHHHHHHHHh
Q 010496 41 TVNPTVQWTSSISRHCRSGRIAEAALEFTRMTLHG-TNPNH-------ITFITLLSGCADFPSQCLFLGAMIHGLVCKL 111 (509)
Q Consensus 41 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~-------~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~ 111 (509)
++-+...+-.-+..+...|.++.|+.+...+.... ..|+. .++..+..++... +++..|...+.+.++.
T Consensus 16 ~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~--~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 16 PRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHD--KEYRNAVSKYTMALQQ 92 (167)
T ss_dssp -----CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHHH
Confidence 33445566677888899999999998887765421 23443 1233444445555 8888888888886544
No 261
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=88.43 E-value=5.1 Score=28.27 Aligned_cols=61 Identities=23% Similarity=0.347 Sum_probs=46.4
Q ss_pred HHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHH
Q 010496 156 IDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTII 219 (509)
Q Consensus 156 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~ 219 (509)
+..+...|++++|..+.+.+..||...|-+|.. .+.|..+++...+..+..+| .|....|.
T Consensus 47 ~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 47 LSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 345778899999999999988888888876654 57788888888887887776 55544443
No 262
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=88.27 E-value=4.4 Score=37.57 Aligned_cols=71 Identities=10% Similarity=-0.048 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHH-----cCCCCcHhHHH
Q 010496 183 WTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLK-----QDFKDNVKVCN 254 (509)
Q Consensus 183 ~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~ 254 (509)
...++..+...|++.+|+..+..+.... +-+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|...+-.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 3445667777888888888888777653 44677888888888888888888888877653 47777765543
No 263
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=88.13 E-value=9.5 Score=31.09 Aligned_cols=47 Identities=19% Similarity=0.211 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCC
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (509)
..+....+..+.+.|..+....+.+.+..++..+-...+.++.+.++
T Consensus 28 ~~vr~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 28 YYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 44444444444444443333334444433444333333344444333
No 264
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=86.66 E-value=4 Score=28.94 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 010496 198 EALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLI 257 (509)
Q Consensus 198 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 257 (509)
++.+-++.+....+.|++....+.+++|.+.+++..|.++++-+...- .....+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~l 86 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHH
Confidence 444555555555566666666666666666666666666666655442 22234455444
No 265
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=86.43 E-value=3.8 Score=30.88 Aligned_cols=70 Identities=11% Similarity=0.122 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHHHhcCCh---HHHHHHHHhC-CCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010496 350 PRIEHYGCIVDLYSRAGRL---EDALNVVENM-PMKP-N-EVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 350 ~~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~p-~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 419 (509)
|+..+--.+..++.+..+. .+++.+++++ +..| . ...+-.|.-++.+.|++++|.+..+.+++..|.+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q 113 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 113 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence 4444444445555555443 2445555444 2223 1 234445555677777777777777777777777643
No 266
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=86.41 E-value=12 Score=30.45 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCC
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD 164 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~ 164 (509)
..+....+.++.+.|+.+....+.+.+..++..+-...+.++.+.++
T Consensus 59 ~~vr~~a~~~L~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~ 105 (201)
T 3ltj_A 59 AWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGD 105 (201)
T ss_dssp HHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc
Confidence 33333444444444443333333333333344333334444444443
No 267
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=85.88 E-value=7.2 Score=31.84 Aligned_cols=92 Identities=10% Similarity=0.057 Sum_probs=62.8
Q ss_pred CCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCccCCcc
Q 010496 380 MKPNEVVLGSLLAACR--TKGDIILAERLMKYLVDLDPG--VDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQKKPGL 455 (509)
Q Consensus 380 ~~p~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~ 455 (509)
.+.|..-...-+.-.- ..++..++..+|..|...+.. ....|...+..+...|++++|.++|+.=++.+-+|
T Consensus 73 YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P---- 148 (202)
T 3esl_A 73 YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP---- 148 (202)
T ss_dssp GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS----
T ss_pred ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc----
Confidence 5556654433333222 245577888999988887665 34458888888889999999999998887776544
Q ss_pred cEEEECCEEEEEecCCCCCCchHHHHHHHHHHHHHHHHcCc
Q 010496 456 SSIEIGSGIHEFMAGDRSHIESEHIYSMLELLSFDLKLCGY 496 (509)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~g~ 496 (509)
...+......+...|.+.++
T Consensus 149 ---------------------~~rL~~~~~~F~~R~~~~~~ 168 (202)
T 3esl_A 149 ---------------------YNRLLRSLSNYEDRLREMNI 168 (202)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHTTC
T ss_pred ---------------------HHHHHHHHHHHHHHHHhcCC
Confidence 23455566667777777777
No 268
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=85.41 E-value=11 Score=28.88 Aligned_cols=71 Identities=11% Similarity=0.130 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHhcCChH---HHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCc
Q 010496 349 SPRIEHYGCIVDLYSRAGRLE---DALNVVENM-PMKP-NE-VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~p-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 419 (509)
.|+..+-..+..++.+....+ +++.+++.+ ...| +. .....|.-++.+.|++++|.++.+.+++..|.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q 112 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ 112 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence 456666566666666665443 455566554 2233 22 34455666889999999999999999999998754
No 269
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.23 E-value=25 Score=33.11 Aligned_cols=199 Identities=9% Similarity=0.018 Sum_probs=117.6
Q ss_pred CCCHHHHHHHHhcCCC---------CCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHH----HHcc
Q 010496 162 RGDIESAVRMFDEMPV---------RDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNA----CANV 228 (509)
Q Consensus 162 ~~~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~----~~~~ 228 (509)
.|++++|++.+-.+.+ ........++..|...|+++...+.+..+....-.. ......+++. ....
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcC
Confidence 3678888887754431 145567788999999999999988887665432122 2222333332 2333
Q ss_pred CCHHHHH--HHHHHHHH--cC-CCC---cHhHHHHHHHHHHhcCCHHHHHHHHHhccC----C-C----hhhHHHHHHHH
Q 010496 229 GTLGIGL--WIHRYVLK--QD-FKD---NVKVCNTLIDLYSRCGCIEFARQVFQRMHK----R-T----LVSWNSIIVGF 291 (509)
Q Consensus 229 ~~~~~a~--~~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~-~----~~~~~~l~~~~ 291 (509)
...+... .+...... .| +-. .......|...|...|++.+|.+++..+.. . + +..+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 3333211 11111110 11 111 233456788999999999999999998762 1 1 24677778889
Q ss_pred HhCCChHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhc
Q 010496 292 AVNGFVGEALEYFNSMQK----EGFKPDG--VSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRA 365 (509)
Q Consensus 292 ~~~~~~~~A~~~~~~m~~----~g~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 365 (509)
...+++..|..++.++.. ....|+. ..+...+..+...+++.+|.+ .|..+...+...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~----------------~y~e~~~~~~~~ 251 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQ----------------YLQEIYQTDAIK 251 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHH----------------HHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHH----------------HHHHHHhccccc
Confidence 999999999999998743 2222221 233344445555566655432 255566677777
Q ss_pred CChHHHHHHHHh
Q 010496 366 GRLEDALNVVEN 377 (509)
Q Consensus 366 g~~~~A~~~~~~ 377 (509)
++.......+..
T Consensus 252 ~d~~~~~~~L~~ 263 (445)
T 4b4t_P 252 SDEAKWKPVLSH 263 (445)
T ss_dssp SCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 776655544443
No 270
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=81.50 E-value=25 Score=30.33 Aligned_cols=9 Identities=0% Similarity=0.110 Sum_probs=3.5
Q ss_pred HHHHHHHHH
Q 010496 403 AERLMKYLV 411 (509)
Q Consensus 403 a~~~~~~~~ 411 (509)
+...+..+.
T Consensus 253 ~~~~L~~~l 261 (280)
T 1oyz_A 253 LLPVLDTML 261 (280)
T ss_dssp GHHHHHHHH
T ss_pred hhHHHHHHH
Confidence 333333333
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=79.63 E-value=4.1 Score=35.00 Aligned_cols=56 Identities=20% Similarity=0.264 Sum_probs=35.6
Q ss_pred HHHhcCChHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 361 LYSRAGRLEDALNVVENM-PMKP-NEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 361 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
...+.|.+++|++.+..- +-.| |...=..|+..+|-.|+++.|.+-++...+++|.
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 445667777776665443 4445 4445555666677777777777777777777665
No 272
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=78.74 E-value=31 Score=29.66 Aligned_cols=119 Identities=16% Similarity=0.091 Sum_probs=67.5
Q ss_pred HHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCC----HHHHHHHHHHHHhc
Q 010496 290 GFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPR----IEHYGCIVDLYSRA 365 (509)
Q Consensus 290 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~ 365 (509)
...+.|..++|+.....-++.. +-|...-..++..+|-.|+++.|.+-++...+ +.|+ ...|..+|.+-
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~---l~p~~~~~a~~yr~lI~aE--- 78 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIK---LFPEYLPGASQLRHLVKAA--- 78 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---HCGGGHHHHHHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---hCchhhHHHHHHHHHHHHH---
Confidence 4556777888888777777752 33555556677778888888888887777763 2343 22344443321
Q ss_pred CChHHHH-HHHHhCC----CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCCCCc
Q 010496 366 GRLEDAL-NVVENMP----MKPNEVVLGSLLAAC--RTKGDIILAERLMKYLVDLDPGVDS 419 (509)
Q Consensus 366 g~~~~A~-~~~~~~~----~~p~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~~~~~~ 419 (509)
... ++|.--. +.....-...++.+. ...|+.++|.++-.++.+.-|..+.
T Consensus 79 ----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 79 ----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp ----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred ----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 111 1221110 111222334444443 3567888888888888777665443
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=77.95 E-value=17 Score=28.14 Aligned_cols=77 Identities=10% Similarity=0.106 Sum_probs=47.2
Q ss_pred HHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 372 LNVVENM-PMKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG--VDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 372 ~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
.+.|... ..+.|..-...-+.-.-.. +++..+|..|...+.. ....|...+..+-..|++++|.++|+.-++.+
T Consensus 55 ~~~f~~~~~YknD~RyLklWl~ya~~~---~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 55 MKEFLDKKKYHNDPRFISYCLKFAEYN---SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHTTCGGGTTCHHHHHHHHHHHTTB---SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHhcccccccCCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4444333 3455655444433322222 3377788888776655 33357777888888888888888888777766
Q ss_pred Ccc
Q 010496 449 IQK 451 (509)
Q Consensus 449 ~~~ 451 (509)
-+|
T Consensus 132 A~P 134 (152)
T 4a1g_A 132 AEP 134 (152)
T ss_dssp CBS
T ss_pred Ccc
Confidence 544
No 274
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=77.78 E-value=14 Score=27.85 Aligned_cols=59 Identities=15% Similarity=0.187 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHH
Q 010496 198 EALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLI 257 (509)
Q Consensus 198 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 257 (509)
+..+-++.+....+.|++......+++|.+.+|+..|.++++-+...- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHH
Confidence 344444555555566666666666666666666666666666655442 22344455444
No 275
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=76.11 E-value=18 Score=25.53 Aligned_cols=87 Identities=11% Similarity=0.031 Sum_probs=58.3
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 010496 229 GTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQ 308 (509)
Q Consensus 229 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 308 (509)
...++|..+-+.+...+. ...+--+-+..+...|+|++|..+.+...-||...|.++.. .+.|..+++...+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 346777777777776652 33333333556677889999988888888888888766643 45677777777777777
Q ss_pred HCCCCCCHHHHH
Q 010496 309 KEGFKPDGVSFT 320 (509)
Q Consensus 309 ~~g~~p~~~~~~ 320 (509)
..| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 664 44444443
No 276
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=75.19 E-value=19 Score=25.43 Aligned_cols=87 Identities=13% Similarity=0.037 Sum_probs=57.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHHHHHHHHHH
Q 010496 229 GTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEALEYFNSMQ 308 (509)
Q Consensus 229 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~m~ 308 (509)
...++|..+-+.+...+. ...+--+-+..+...|+|++|..+.+...-||...|.++.. .+.|..+++...+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 346777777777776652 33333333556677888999888888888888888876654 35567777777776776
Q ss_pred HCCCCCCHHHHH
Q 010496 309 KEGFKPDGVSFT 320 (509)
Q Consensus 309 ~~g~~p~~~~~~ 320 (509)
..| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 654 44444443
No 277
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=74.88 E-value=24 Score=27.76 Aligned_cols=69 Identities=17% Similarity=0.144 Sum_probs=44.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 010496 380 MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG--VDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQK 451 (509)
Q Consensus 380 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 451 (509)
.+.|..-...-+.-.-..+ ++..+|..|...+.. ....|...+..+-..|++.+|.++|+.-++.+-+|
T Consensus 59 YknD~RyLklWl~ya~~~~---~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 59 YYSDPRFLNLWLKLGRLCN---EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp GTTCHHHHHHHHHHHHHCS---CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred hccCHHHHHHHHHHHHhcC---CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 4556554444443222223 366677777776655 33457777888888888888888888877776554
No 278
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.48 E-value=8.8 Score=36.09 Aligned_cols=96 Identities=8% Similarity=-0.077 Sum_probs=61.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHhHHhcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHhCC----CCCCHHHHH----
Q 010496 318 SFTGALTACSHAGLIEDGLRYFDIMKKIYR-VSPRIEHYGCIVDLYSRAGRLEDALNVVENMP----MKPNEVVLG---- 388 (509)
Q Consensus 318 ~~~~li~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~p~~~~~~---- 388 (509)
+...+...+.+.|+++.|.+.+.++..... ..--...+..+++.+...+++..+...++++. ..++....+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 556677788888888888888888874322 12235667777888888888888887777751 122222111
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhc
Q 010496 389 SLLAACRTKGDIILAERLMKYLVDL 413 (509)
Q Consensus 389 ~l~~~~~~~g~~~~a~~~~~~~~~~ 413 (509)
.-+..+...+++.+|...|-.+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 1112244567788888777776654
No 279
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.86 E-value=59 Score=30.40 Aligned_cols=33 Identities=3% Similarity=-0.191 Sum_probs=22.9
Q ss_pred CCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010496 415 PGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 415 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 449 (509)
|-....+..|+..+.- ..+++.+.+.+|+..|.
T Consensus 344 ~Ys~I~l~~mA~~l~~--s~~~~E~~L~~lI~~g~ 376 (429)
T 4b4t_R 344 SYKTLSLKSMASAFGV--SVAFLDNDLGKFIPNKQ 376 (429)
T ss_dssp TCSEEEHHHHHHHHTS--CHHHHHHHHHHHHHHTS
T ss_pred HhceeeHHHHHHHhCc--CHHHHHHHHHHHHHcCC
Confidence 4444567777777643 46778888888887664
No 280
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=66.84 E-value=45 Score=28.46 Aligned_cols=114 Identities=11% Similarity=0.068 Sum_probs=56.4
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhhCCCCCCcc----cHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCch-HHHHHH
Q 010496 50 SSISRHCRSGRIAEAALEFTRMTLHGTNPNHI----TFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNV-MVGTAL 124 (509)
Q Consensus 50 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l 124 (509)
+.+...++.|+.+....+ .+.|..++.. .++.|..++ .. ++.+ +.+.+.+.|..++.. ......
T Consensus 7 ~~L~~A~~~g~~~~v~~L----l~~g~~~~~~~~~~g~t~L~~A~-~~--g~~~----~v~~Ll~~g~~~~~~~~~g~t~ 75 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQL----LEGGANVNFQEEEGGWTPLHNAV-QM--SRED----IVELLLRHGADPVLRKKNGATP 75 (285)
T ss_dssp HHHHHHHHTTCHHHHHHH----HHTTCCTTCCCTTTCCCHHHHHH-HT--TCHH----HHHHHHHTTCCTTCCCTTCCCH
T ss_pred hHHHHHHHcCCHHHHHHH----HHcCCCcccccCCCCCcHHHHHH-Hc--CCHH----HHHHHHHcCCCCcccCCCCCCH
Confidence 456666778887655444 4455444322 233343333 33 5444 444555666554311 011123
Q ss_pred HHHHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcC
Q 010496 125 LDMYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEM 175 (509)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 175 (509)
+...+..|+.+-+..+++.-... +...++ .+...+..|+.+-+.-+++.-
T Consensus 76 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~~~~Ll~~g 128 (285)
T 1wdy_A 76 FLLAAIAGSVKLLKLFLSKGADVNECDFYGFT-AFMEAAVYGKVKALKFLYKRG 128 (285)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCBCTTCCB-HHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCccCcccCC-HHHHHHHhCCHHHHHHHHHhC
Confidence 34445677777777777653322 221122 233345667777666666654
No 281
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=66.51 E-value=38 Score=25.32 Aligned_cols=63 Identities=19% Similarity=0.321 Sum_probs=35.8
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCCH
Q 010496 153 NAMIDGYMRRGDIESAVRMFDEMPVR---DAISWTALLNGFVKRGY--FEEALECFREMQISGVEPDY 215 (509)
Q Consensus 153 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~~ 215 (509)
..++.-|...|+.++|...++++..| ......++..++-+.+. .+.+..++..+...|+-+..
T Consensus 11 ~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~~ 78 (129)
T 2nsz_A 11 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITID 78 (129)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCHH
Confidence 45666677777777777777777655 12233334444444332 35566777777666644433
No 282
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=64.44 E-value=35 Score=26.43 Aligned_cols=62 Identities=19% Similarity=0.341 Sum_probs=34.0
Q ss_pred HHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCC--hHHHHHHHHHHHHcCCCCC
Q 010496 153 NAMIDGYMRRGDIESAVRMFDEMPVR---DAISWTALLNGFVKRGY--FEEALECFREMQISGVEPD 214 (509)
Q Consensus 153 ~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~--~~~A~~~~~~m~~~~~~p~ 214 (509)
..++.-|...|+.++|...++++..| ...+..++..++-+.++ .+.+..++..+...|+-+.
T Consensus 13 ~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 13 DMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 44566666677777777777776655 12233333444443222 3456666666666654443
No 283
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.89 E-value=52 Score=31.47 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHhCCCC----CCHH--HH-HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 010496 353 EHYGCIVDLYSRAGRLEDALNVVENMPMK----PNEV--VL-GSLLAACRTKGDIILAERLMKYLVDLDPG 416 (509)
Q Consensus 353 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~----p~~~--~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 416 (509)
..++.+++.|...+.++.|..++.+..+. ++.. .| ..++..+.-.+++.+|.+.+..+.+.-|.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 34555556666666666666666555321 1111 11 22233445555666666666555554443
No 284
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=59.95 E-value=1.4e+02 Score=29.67 Aligned_cols=89 Identities=15% Similarity=0.174 Sum_probs=48.6
Q ss_pred HHHHhcCChHHHHHHHHhCCCCCCH-HHHHHHHHHHH-hcC--------------C-HHHHHHHHHHHHhc-----C--C
Q 010496 360 DLYSRAGRLEDALNVVENMPMKPNE-VVLGSLLAACR-TKG--------------D-IILAERLMKYLVDL-----D--P 415 (509)
Q Consensus 360 ~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~l~~~~~-~~g--------------~-~~~a~~~~~~~~~~-----~--~ 415 (509)
.-+...|++++|+.+|.-.+....+ .+.+.++.-.. ... + ...|.++.+..... . +
T Consensus 451 ~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~Ls~~l~~~~~~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~ 530 (661)
T 2qx5_A 451 RRADEDGRIYDSILLYQLAEEYDIVITLVNSLLSDTLSASDLDQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHV 530 (661)
T ss_dssp HHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCH
T ss_pred HHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccccccccccccccccccHHHHHHHHHHHHhcCchhhhhccH
Confidence 3566789999999999988722222 24444444332 211 1 23444444442221 1 1
Q ss_pred CCCchHHHHH---HH--HHHcCCchHHHHHHHHHHhCCCcc
Q 010496 416 GVDSNYVLLA---NM--YAAVGKWDGAGKIRRTMKGRGIQK 451 (509)
Q Consensus 416 ~~~~~~~~l~---~~--~~~~g~~~~A~~~~~~m~~~~~~~ 451 (509)
.+..++..|. .+ +.+.|+|++|++.++++ ++-|
T Consensus 531 ~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~L---~llP 568 (661)
T 2qx5_A 531 KNKEICMLLLNISSIRELYFNKQWQETLSQMELL---DLLP 568 (661)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHT---SCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC---CCCC
Confidence 1223444443 33 37899999999888764 4555
No 285
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=58.76 E-value=86 Score=26.81 Aligned_cols=172 Identities=8% Similarity=-0.038 Sum_probs=67.5
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCC----HHHHHHHHhc--CCCCCHhHHHHHHHHHH
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGD----IESAVRMFDE--MPVRDAISWTALLNGFV 191 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~~A~~~~~~--~~~~~~~~~~~li~~~~ 191 (509)
..+....+..+.+.|..+....+.+.+..++...-...+.++.+.|. ......++.. ...++...-...+.++.
T Consensus 37 ~~vr~~A~~~L~~~~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~ 116 (280)
T 1oyz_A 37 SLKRISSARVLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTA 116 (280)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCchHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 44444444444444443333333333444454444444455555442 1222223321 12334444444444444
Q ss_pred HcCC-----hHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC--
Q 010496 192 KRGY-----FEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG-- 264 (509)
Q Consensus 192 ~~~~-----~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 264 (509)
..+. ...+...+..+.. .++...-...+.++...++.+ +...+..+.+ .++..+-...+.++...+
T Consensus 117 ~l~~~~~~~~~~~~~~L~~~l~---d~~~~vR~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~~~~~~ 189 (280)
T 1oyz_A 117 QRCKKNPIYSPKIVEQSQITAF---DKSTNVRRATAFAISVINDKA-TIPLLINLLK---DPNGDVRNWAAFAININKYD 189 (280)
T ss_dssp HHHHHCGGGHHHHHHHHHHHTT---CSCHHHHHHHHHHHHTC---C-CHHHHHHHHT---CSSHHHHHHHHHHHHHHTCC
T ss_pred HHhccCCcccHHHHHHHHHHhh---CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHHhhccC
Confidence 4331 2233333333332 344444444455555554422 2223333332 233334344444444433
Q ss_pred CHHHHHHHHHhccCCChhhHHHHHHHHHhCCC
Q 010496 265 CIEFARQVFQRMHKRTLVSWNSIIVGFAVNGF 296 (509)
Q Consensus 265 ~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~ 296 (509)
.......+...+..++..+-...+.++.+.|+
T Consensus 190 ~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~~ 221 (280)
T 1oyz_A 190 NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD 221 (280)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Confidence 22222222333334444444445555555553
No 286
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=56.53 E-value=1.2e+02 Score=27.84 Aligned_cols=92 Identities=10% Similarity=0.025 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHH
Q 010496 349 SPRIEHYGCIVDLYSRAGRLEDALNVVENMP--MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLAN 426 (509)
Q Consensus 349 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 426 (509)
.|....+..++.+| ..+++.+...+++..+ +..|......+-. +.+ .-.. ..+.++. .|-....+..++.
T Consensus 253 ~pei~~l~~L~~a~-~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~-L~~-~Ir~---~~L~~i~--~pYsrIsl~~iA~ 324 (394)
T 3txn_A 253 GRDIDAMKSVAEAS-HKRSLADFQAALKEYKKELAEDVIVQAHLGT-LYD-TMLE---QNLCRII--EPYSRVQVAHVAE 324 (394)
T ss_dssp SHHHHHHHHHHHHH-HTTCHHHHHHHHHHSTTTTTTSHHHHHHHHH-HHH-HHHH---HHHHHHH--TTCSEEEHHHHHH
T ss_pred CccHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhcChHHHHHHHH-HHH-HHHH---HHHHHHh--HhhceeeHHHHHH
Confidence 45666666666665 4567877777777653 4445543211111 100 0011 1122222 3444456777777
Q ss_pred HHHHcCCchHHHHHHHHHHhCCCc
Q 010496 427 MYAAVGKWDGAGKIRRTMKGRGIQ 450 (509)
Q Consensus 427 ~~~~~g~~~~A~~~~~~m~~~~~~ 450 (509)
.+.- ..+++...+-+|+..|.-
T Consensus 325 ~l~l--s~~evE~~L~~lI~dg~I 346 (394)
T 3txn_A 325 SIQL--PMPQVEKKLSQMILDKKF 346 (394)
T ss_dssp HHTC--CHHHHHHHHHHHHHTTSS
T ss_pred HHCc--CHHHHHHHHHHHHHCCCe
Confidence 7653 678999999999987753
No 287
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=56.50 E-value=1.4e+02 Score=28.56 Aligned_cols=61 Identities=11% Similarity=0.087 Sum_probs=41.2
Q ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHhccCCCh-------hhHH-HHHHHHHhCCChHHHHHHHHHHHHC
Q 010496 250 VKVCNTLIDLYSRCGCIEFARQVFQRMHKRTL-------VSWN-SIIVGFAVNGFVGEALEYFNSMQKE 310 (509)
Q Consensus 250 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~-~l~~~~~~~~~~~~A~~~~~~m~~~ 310 (509)
..++|.+++.|...+.++.|..+..+..-|.. ..|. .+...+.-.+++.+|.+.+....+.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45677778888888888888888887764422 1122 2345566678888888888877764
No 288
>2pk8_A Uncharacterized protein PF0899; structural genomics, uncharacte protein, PSI, protein structure initiative; 1.85A {Pyrococcus furiosus dsm 3638} SCOP: d.274.1.1
Probab=56.47 E-value=11 Score=25.85 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=21.8
Q ss_pred chHHHHHHHHHHHHHHHHcCccCCCC
Q 010496 476 ESEHIYSMLELLSFDLKLCGYVPETV 501 (509)
Q Consensus 476 ~~~~~~~~~~~~~~~m~~~g~~pd~~ 501 (509)
...++...++.-.++++..|++||-.
T Consensus 14 dlirIl~~ieekinELk~dG~ePDIi 39 (103)
T 2pk8_A 14 DLIRILGEIEEKMNELKMDGFNPDII 39 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCEE
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCeE
Confidence 45677888888999999999999953
No 289
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=55.63 E-value=83 Score=25.64 Aligned_cols=55 Identities=11% Similarity=0.053 Sum_probs=32.8
Q ss_pred CChHHHHHHHHHHHHcCCCCC-HhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 010496 194 GYFEEALECFREMQISGVEPD-YVTIISVLNACANVGTLGIGLWIHRYVLKQDFKD 248 (509)
Q Consensus 194 ~~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 248 (509)
+...++..+|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 335566666776666654433 3445555666666666666666666666665444
No 290
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=55.12 E-value=53 Score=27.28 Aligned_cols=69 Identities=17% Similarity=0.151 Sum_probs=44.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CCchHHHHHHHHHHcCCchHHHHHHHHHHhCCCcc
Q 010496 380 MKPNEVVLGSLLAACRTKGDIILAERLMKYLVDLDPG--VDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGIQK 451 (509)
Q Consensus 380 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~ 451 (509)
.+.|..-...-+. |+.. .+++..+|..|...+.. ....|...+..+-..|++.+|.++|+.=++.+-+|
T Consensus 113 YknD~RyLklWl~-Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 113 YKDDVRYLRIWMQ-YVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp GTTCHHHHHHHHH-HHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred ccCCHHHHHHHHH-HHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4556554443333 2221 24666788888776665 33457788888888889999988888777766443
No 291
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=54.21 E-value=76 Score=26.70 Aligned_cols=88 Identities=13% Similarity=0.151 Sum_probs=43.0
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHc--CCCC----CHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHH
Q 010496 186 LLNGFVKRGYFEEALECFREMQIS--GVEP----DYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDL 259 (509)
Q Consensus 186 li~~~~~~~~~~~A~~~~~~m~~~--~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 259 (509)
-++.+....++++|.+++++..+. ++++ ........+..-.....-.-+..+.+.+.. ..........+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 355666777777777777665432 1121 111222223332333333333344444422 3344455555666
Q ss_pred HHhcCCHHHHHHHHHhc
Q 010496 260 YSRCGCIEFARQVFQRM 276 (509)
Q Consensus 260 ~~~~g~~~~a~~~~~~~ 276 (509)
+.+.|+-++|.++|-+.
T Consensus 101 L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHH
Confidence 66677777777666544
No 292
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=53.91 E-value=1.2e+02 Score=26.89 Aligned_cols=62 Identities=10% Similarity=0.092 Sum_probs=45.5
Q ss_pred HHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010496 374 VVENMPMKPNEV--VLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 374 ~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 449 (509)
+|...++.|... ++..-+..+.+.+++..|..+.+++++.+|... ..++|.+++....+++.
T Consensus 195 YFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~~~ 258 (325)
T 3mv2_A 195 YFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSMAS 258 (325)
T ss_dssp HGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTSCC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCCC
Confidence 344446666433 677778889999999999999999999988532 35567888877765543
No 293
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=53.82 E-value=47 Score=25.67 Aligned_cols=56 Identities=9% Similarity=0.007 Sum_probs=37.4
Q ss_pred HHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHH
Q 010496 101 GAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMI 156 (509)
Q Consensus 101 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~ 156 (509)
...+|..|...|+-..-...|...+..+...|++.+|.++|+.-.+........|.
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~rL~ 139 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREFLQ 139 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHH
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHH
Confidence 66777777777766666677777777777777777777777766544444333333
No 294
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=53.38 E-value=1.6e+02 Score=31.04 Aligned_cols=127 Identities=9% Similarity=-0.048 Sum_probs=71.5
Q ss_pred HHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHH
Q 010496 155 MIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGTLGIG 234 (509)
Q Consensus 155 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a 234 (509)
++..+...|.++-|.++...+.. ++..-..+.++|...|++++|..+|++.- .|+..+...... ....
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~----------~~~~ 883 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAV----------LREF 883 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGG----------GHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccc----------hhhh
Confidence 55566777888888777766654 55555568888999999999999998764 233221111000 0000
Q ss_pred HHHHHHHHHcCCCCcHhHHHHHHHHHHhcCCHHHHHHHHHhcc----CCCh----hhHHHHHHHHHhCC
Q 010496 235 LWIHRYVLKQDFKDNVKVCNTLIDLYSRCGCIEFARQVFQRMH----KRTL----VSWNSIIVGFAVNG 295 (509)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~----~~~~~l~~~~~~~~ 295 (509)
..++.. .+.. .....-|..++..+.+.+.++-+.++-+... ..|. ..|+.+.++.+..|
T Consensus 884 ~~ll~~-~e~~-~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEK-YHHQ-NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHH-TTTC-SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCc-cccc-chhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 011110 0000 1123367778888888888877776655443 2233 25666666665443
No 295
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=51.02 E-value=98 Score=25.12 Aligned_cols=65 Identities=9% Similarity=0.105 Sum_probs=41.0
Q ss_pred HHHHHHHHH---HcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC-----HHHHHHHHHHHHHcCCCC
Q 010496 183 WTALLNGFV---KRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGT-----LGIGLWIHRYVLKQDFKD 248 (509)
Q Consensus 183 ~~~li~~~~---~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~~ 248 (509)
+..+|+++. +..+++.|+-++.+|.+.| .|....-..++-+.-..|. ...|...++.....|.|-
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE 86 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGLGNPAAAARTVNAVLAAEKLGLPE 86 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGGGCHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCH
Confidence 334555553 4578999999999999998 6665555555555555543 234455555566666443
No 296
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=48.21 E-value=2.1e+02 Score=30.08 Aligned_cols=129 Identities=9% Similarity=0.042 Sum_probs=70.9
Q ss_pred HHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCChHHH
Q 010496 123 ALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVR---DAISWTALLNGFVKRGYFEEA 199 (509)
Q Consensus 123 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A 199 (509)
.++..+...|..+-|.++...+.. ++..--.+..+|...|++++|.+.|++.-.. +..... .....
T Consensus 815 ~l~~~L~~~~~~~~a~eL~~~~~~-t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~----------~~~~~ 883 (950)
T 4gq2_M 815 ELVEKLFLFKQYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFA----------VLREF 883 (950)
T ss_dssp HHHHHHHHTTCHHHHHHHGGGCCS-SHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCG----------GGHHH
T ss_pred HHHHHHHHhcHHHHHHHHHhhcCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCccccc----------chhhh
Confidence 366777778888888776666654 4443345777889999999999999876421 000000 00011
Q ss_pred HHHHHHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcH----hHHHHHHHHHHhcC
Q 010496 200 LECFREMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNV----KVCNTLIDLYSRCG 264 (509)
Q Consensus 200 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g 264 (509)
..++..... ......-|..++..+-+.+.++.+.++-+.+++.--+.|. ..+..+.++++..|
T Consensus 884 ~~ll~~~e~--~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 884 QEIAEKYHH--QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HHHHHHTTT--CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred hhccCcccc--cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 111111100 0111235566666677777777777776666654222222 35566666665544
No 297
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=46.84 E-value=2.3e+02 Score=28.19 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=21.9
Q ss_pred chHHHHHHHHcCCChhHHHHHHHHHhh
Q 010496 47 QWTSSISRHCRSGRIAEAALEFTRMTL 73 (509)
Q Consensus 47 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 73 (509)
.|- +|-.|.|.|.+++|.++.++...
T Consensus 155 ~Wa-~IyY~LR~G~~~~A~e~~~~~~~ 180 (661)
T 2qx5_A 155 IWA-LIFYLLRAGLIKEALQVLVENKA 180 (661)
T ss_dssp HHH-HHHHHHTTTCHHHHHHHHHHTGG
T ss_pred cHH-HHHHHHhcCCHHHHHHHHHHhhh
Confidence 665 78899999999999999877653
No 298
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=46.02 E-value=97 Score=27.79 Aligned_cols=26 Identities=15% Similarity=0.291 Sum_probs=14.2
Q ss_pred HHHHHHHHhcCCchHHHHHHHhcCCC
Q 010496 122 TALLDMYAKFGRMDLATVVFDAMRVK 147 (509)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 147 (509)
..++.-|...|+.++|...++++..|
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p 40 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASP 40 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCc
Confidence 34455555555666666655555544
No 299
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=45.87 E-value=87 Score=24.16 Aligned_cols=62 Identities=16% Similarity=0.226 Sum_probs=36.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCC---hhhHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCC
Q 010496 253 CNTLIDLYSRCGCIEFARQVFQRMHKRT---LVSWNSIIVGFAVNGF--VGEALEYFNSMQKEGFKP 314 (509)
Q Consensus 253 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~g~~p 314 (509)
...++.-|...|+.++|.+.++++..|. ..+...+..++-+.+. .+.+..++..+...|+-+
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 4556777777788888888888776542 2233334444444322 345566666666655443
No 300
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=45.48 E-value=66 Score=27.08 Aligned_cols=89 Identities=10% Similarity=0.048 Sum_probs=49.1
Q ss_pred HHHHHHHcCCChhHHHHHHHHHhhC--CCCC----CcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHH
Q 010496 50 SSISRHCRSGRIAEAALEFTRMTLH--GTNP----NHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTA 123 (509)
Q Consensus 50 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p----~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 123 (509)
--+..+....++++|++++++..+. ++++ +.......+..-... +....+..+...+ .. .+. +.....
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~e--R~~~L~~~L~~~l-~~--~~~-~~~~r~ 96 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQ--RREAISSKLSQSI-LS--SNE-IVHLKS 96 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHH--HHHHHHHHHHHHH-HT--CSS-HHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHH--HHHHHHHHHHHHH-Hh--cCC-HHHHHH
Confidence 3578888999999999999987542 2222 112222222221111 3333334443333 22 233 555566
Q ss_pred HHHHHHhcCCchHHHHHHHhc
Q 010496 124 LLDMYAKFGRMDLATVVFDAM 144 (509)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~ 144 (509)
.+..+.+.|+.++|..+|-+.
T Consensus 97 ~v~~L~rLg~~~~A~~lfL~~ 117 (235)
T 2d2s_A 97 GTENMIKLGLPEQALDLFLQN 117 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCChhHHHHHHHHH
Confidence 667777788888887777544
No 301
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=43.71 E-value=38 Score=28.67 Aligned_cols=57 Identities=5% Similarity=-0.168 Sum_probs=36.6
Q ss_pred HHHHHHcCCChhHHHHHHHHHhhCCCCCCcc-------cHHHHHHhhc--CCCccchhHHHHHHHHHH
Q 010496 51 SISRHCRSGRIAEAALEFTRMTLHGTNPNHI-------TFITLLSGCA--DFPSQCLFLGAMIHGLVC 109 (509)
Q Consensus 51 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~~~~--~~~~~~~~~a~~~~~~~~ 109 (509)
.+...++.|+.+....+++.+.+.|..++.. -.+.|..++. +. +..+.+..+++.-.
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~--g~~~~v~~Ll~~g~ 73 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSA--GRNDTIPILLDIAE 73 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBT--TBCTHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhc--CCHHHHHHHHHhcc
Confidence 4555677899998888888888877666633 3344444432 34 66776666665543
No 302
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=43.57 E-value=1.2e+02 Score=24.57 Aligned_cols=46 Identities=22% Similarity=0.297 Sum_probs=30.4
Q ss_pred HHHHHHHH---HcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccC
Q 010496 184 TALLNGFV---KRGYFEEALECFREMQISGVEPDYVTIISVLNACANVG 229 (509)
Q Consensus 184 ~~li~~~~---~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~ 229 (509)
..+|+++. +..+++.|+-++.+|++.|-.|....-..++-+.-..|
T Consensus 8 Yd~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIG 56 (201)
T 3bge_A 8 YDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVG 56 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhcc
Confidence 34555553 45789999999999999886665555445555544433
No 303
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=43.05 E-value=1.3e+02 Score=25.43 Aligned_cols=50 Identities=6% Similarity=-0.060 Sum_probs=21.5
Q ss_pred HHHHHhcCCchHHHHHHHhcCCCC---hHHHHHHHHHHHhCCCHHHHHHHHhc
Q 010496 125 LDMYAKFGRMDLATVVFDAMRVKS---SFTWNAMIDGYMRRGDIESAVRMFDE 174 (509)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~ 174 (509)
+...++.|+.+....+++.-...+ ...-.+.+...+..|+.+-+.-+++.
T Consensus 9 L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 9 LIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence 334455556555555555432211 11111233334445555555555543
No 304
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=42.51 E-value=1.9e+02 Score=25.89 Aligned_cols=92 Identities=11% Similarity=0.118 Sum_probs=51.2
Q ss_pred HHHHHHHHHhCCCHHHHHHHHhcCCCCC---HhHHHHHHHHHHHcC-ChHHHHHHHHHHHHcCCCCCHhHH---HHHHHH
Q 010496 152 WNAMIDGYMRRGDIESAVRMFDEMPVRD---AISWTALLNGFVKRG-YFEEALECFREMQISGVEPDYVTI---ISVLNA 224 (509)
Q Consensus 152 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~~~~p~~~~~---~~l~~~ 224 (509)
...++.-|...|+.++|...++++..|. ......+..++-+.. .-+.+..++..+.+.|+-+..... ..++..
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~is~~~~~~Gf~~~~~~ 93 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGHLSTAQYYQGLYEILEL 93 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence 4567888999999999999999998773 222222222332211 235566777777776654433332 222222
Q ss_pred HHcc-CCHHHHHHHHHHHHH
Q 010496 225 CANV-GTLGIGLWIHRYVLK 243 (509)
Q Consensus 225 ~~~~-~~~~~a~~~~~~~~~ 243 (509)
+-.. =|...|...+..+..
T Consensus 94 l~Dl~lDiP~a~~~La~~v~ 113 (339)
T 1ug3_A 94 AEDMEIDIPHVWLYLAELVT 113 (339)
T ss_dssp HHHHTTTCTTHHHHHHHHHG
T ss_pred ChHhhcCccchHHHHHHHHH
Confidence 2211 134455555555543
No 305
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=41.57 E-value=1.1e+02 Score=22.82 Aligned_cols=63 Identities=16% Similarity=0.203 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhccCCC---hhhHHHHHHHHHhCCC--hHHHHHHHHHHHHCCCCCC
Q 010496 253 CNTLIDLYSRCGCIEFARQVFQRMHKRT---LVSWNSIIVGFAVNGF--VGEALEYFNSMQKEGFKPD 315 (509)
Q Consensus 253 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~~~~~~~--~~~A~~~~~~m~~~g~~p~ 315 (509)
...++.-|...|+.++|.+.++++..|. ..+...+..++-+.+. .+.+..++..+...|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 4456777777788888888888876552 1233334444444332 3456666766666655433
No 306
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=39.43 E-value=1.6e+02 Score=24.16 Aligned_cols=67 Identities=13% Similarity=0.270 Sum_probs=42.2
Q ss_pred hHHHHHHHHHH---HcCChHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHccCC-----HHHHHHHHHHHHHcCCC
Q 010496 181 ISWTALLNGFV---KRGYFEEALECFREMQISGVEPDYVTIISVLNACANVGT-----LGIGLWIHRYVLKQDFK 247 (509)
Q Consensus 181 ~~~~~li~~~~---~~~~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~~~ 247 (509)
..+..+|+++. +..+++.|+-++.+|++.|-.|....-..++-+.-..|. ...|...++.....|.|
T Consensus 33 d~HYd~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~P 107 (213)
T 3ctd_A 33 QNHFDVISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFP 107 (213)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCC
Confidence 34445566654 457899999999999998876665555555555544443 34455555555556643
No 307
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=39.10 E-value=1.5e+02 Score=26.17 Aligned_cols=62 Identities=16% Similarity=0.174 Sum_probs=44.6
Q ss_pred HHHhCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCCC
Q 010496 374 VVENMPMKPNEV--VLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRGI 449 (509)
Q Consensus 374 ~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 449 (509)
+|...++.|... ++..-+....+.+++..|..+.+++++.+|... ..++|.+++....+++.
T Consensus 186 YFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~~~qArkil~~ce~~~~ 249 (320)
T 3mkr_B 186 YFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKPE--------------VAQQTRKILSACEKNPT 249 (320)
T ss_dssp HHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCHH--------------HHHHHHHHHHHHHHSCC
T ss_pred HhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcCCC
Confidence 344446666433 667778888999999999999999999987522 34557777777766543
No 308
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=37.58 E-value=2.8e+02 Score=26.59 Aligned_cols=67 Identities=9% Similarity=0.004 Sum_probs=38.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHH----HHH-HHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHhCC
Q 010496 382 PNEVVLGSLLAACRTKGDIILAER----LMK-YLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKGRG 448 (509)
Q Consensus 382 p~~~~~~~l~~~~~~~g~~~~a~~----~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 448 (509)
.|......|-..+...|..++-++ .++ -+.+..+++......|-+.|.+.|++-+|-+++..+-..+
T Consensus 176 ~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s~ 247 (525)
T 3i5p_A 176 NDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATSN 247 (525)
T ss_dssp CCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSSS
T ss_pred ChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhCC
Confidence 455555555566666665554443 111 1222334455556667777778888888888888777663
No 309
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=36.88 E-value=82 Score=27.80 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=19.0
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHh
Q 010496 49 TSSISRHCRSGRIAEAALEFTRMT 72 (509)
Q Consensus 49 ~~li~~~~~~g~~~~A~~~~~~m~ 72 (509)
..+|.-|...|+.++|...++++.
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhC
Confidence 457777888888888888888764
No 310
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=36.74 E-value=66 Score=26.73 Aligned_cols=46 Identities=7% Similarity=0.135 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcC
Q 010496 100 LGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMR 145 (509)
Q Consensus 100 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 145 (509)
....+|..|...|+--.-...|...+..+...|++.+|.++|+.-.
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 177 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGK 177 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444555555555544444555555555555555555555555443
No 311
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=35.31 E-value=1.1e+02 Score=22.51 Aligned_cols=67 Identities=7% Similarity=-0.089 Sum_probs=33.1
Q ss_pred CCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHH
Q 010496 78 PNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFT 151 (509)
Q Consensus 78 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 151 (509)
++...-...+.++... ++......+ ...... ++ ..+....+.++.+.|+.+....+.+.+..++..+
T Consensus 54 ~~~~vR~~A~~aL~~~--~~~~a~~~L-~~~L~d---~~-~~VR~~A~~aL~~~~~~~a~~~L~~~l~d~~~~v 120 (131)
T 1te4_A 54 EDWRIRGAAAWIIGNF--QDERAVEPL-IKLLED---DS-GFVRSGAARSLEQIGGERVRAAMEKLAETGTGFA 120 (131)
T ss_dssp SCHHHHHHHHHHHGGG--CSHHHHHHH-HHHHHH---CC-THHHHHHHHHHHHHCSHHHHHHHHHHTTSCCTHH
T ss_pred CCHHHHHHHHHHHHhc--CCHHHHHHH-HHHHcC---CC-HHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHH
Confidence 4555555555666555 443322222 223322 33 6666677777777776444444444444444433
No 312
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=34.58 E-value=1.5e+02 Score=26.48 Aligned_cols=83 Identities=11% Similarity=0.029 Sum_probs=34.9
Q ss_pred HHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHH
Q 010496 127 MYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECF 203 (509)
Q Consensus 127 ~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~ 203 (509)
..+..|+.+.+..+++.-... +..-++ .+...+..|+.+-+.-+++.-...+...-.+.+...+..|+.+-+..++
T Consensus 26 ~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t-~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 104 (364)
T 3ljn_A 26 VAARKGQTDEVRRLIETGVSPTIQNRFGCT-ALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAVMANKTDLVVALV 104 (364)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCCCTTCCC-HHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHHHTTCHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCCccccCCCCCc-HHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 334455555555555542211 111111 2233344555555555554433222111112233344556666555555
Q ss_pred HHHHHcC
Q 010496 204 REMQISG 210 (509)
Q Consensus 204 ~~m~~~~ 210 (509)
+.....|
T Consensus 105 ~~~~~~~ 111 (364)
T 3ljn_A 105 EGAKERG 111 (364)
T ss_dssp HHHHHHT
T ss_pred HhccccC
Confidence 5543333
No 313
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=34.06 E-value=1.2e+02 Score=22.94 Aligned_cols=59 Identities=5% Similarity=0.026 Sum_probs=29.0
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC
Q 010496 307 MQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGR 367 (509)
Q Consensus 307 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 367 (509)
+.+.|.+++..=. .++..+...+..-.|.++++.+.+ .+...+..|...-+..+...|-
T Consensus 13 l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 13 LKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEG-KFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGG-GCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHH-hCCCCChhhHHHHHHHHHHCCC
Confidence 4455655554322 233333344445556666666653 3333444444444555655554
No 314
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=34.03 E-value=1.7e+02 Score=25.02 Aligned_cols=92 Identities=8% Similarity=0.042 Sum_probs=45.3
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchH
Q 010496 358 IVDLYSRAGRLEDALNVVENMPMKPNE-VVLGSLLAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDG 436 (509)
Q Consensus 358 li~~~~~~g~~~~A~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 436 (509)
.+...+..|+.+-+..+++.-....+. ... +.+...+..|+.+-+..+++.-...+..+..-....+....+.|+
T Consensus 132 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~--- 207 (285)
T 3kea_A 132 SFYHAVMLNDVSIVSYFLSEIPSTFDLAILL-SCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKD--- 207 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSCTTCCCSTHH-HHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTC---
T ss_pred HHHHHHHcCCHHHHHHHHhCCCccccccCCc-cHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCC---
Confidence 344455566666555555543222222 222 233444567777777777776555444332222221122233444
Q ss_pred HHHHHHHHHhCCCccCCc
Q 010496 437 AGKIRRTMKGRGIQKKPG 454 (509)
Q Consensus 437 A~~~~~~m~~~~~~~~~~ 454 (509)
.++.+.+.+.|..++..
T Consensus 208 -~~~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 208 -IEMLQALFKYDINIYSA 224 (285)
T ss_dssp -HHHHHHHTTSCBCSTTT
T ss_pred -HHHHHHHHHcCCCCCCC
Confidence 34555666777766543
No 315
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=33.21 E-value=72 Score=22.32 Aligned_cols=37 Identities=19% Similarity=0.055 Sum_probs=25.2
Q ss_pred CCHHHHHHHHHhccCCChhhHHHHHHHHHhCCChHHH
Q 010496 264 GCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFVGEA 300 (509)
Q Consensus 264 g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 300 (509)
...++|.++++.+..+++.+|..++.++...|...-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 3567777777777777777777777777665654444
No 316
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=33.05 E-value=1.5e+02 Score=24.15 Aligned_cols=87 Identities=8% Similarity=0.011 Sum_probs=45.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHhhCCCCCCcc---cHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCchH-HHHHHHH
Q 010496 51 SISRHCRSGRIAEAALEFTRMTLHGTNPNHI---TFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNNVM-VGTALLD 126 (509)
Q Consensus 51 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~ 126 (509)
.+...++.|+.+.+..+++.+.+.|..++.. ..+.+..++ .. ++.+ +.+.+.+.|..++... .-...+.
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~-~~--~~~~----~v~~Ll~~g~~~~~~~~~g~t~l~ 84 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAV-IT--TLPS----VVRLLVTAGASPMALDRHGQTAAH 84 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHH-HT--TCHH----HHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHH-Hc--CCHH----HHHHHHHcCCCccccCCCCCCHHH
Confidence 3455577888888888888777766555432 233333333 23 4443 4444555665443110 0112233
Q ss_pred HHHhcCCchHHHHHHHhc
Q 010496 127 MYAKFGRMDLATVVFDAM 144 (509)
Q Consensus 127 ~~~~~g~~~~A~~~~~~~ 144 (509)
..+..|+.+-+..+++..
T Consensus 85 ~A~~~~~~~~~~~Ll~~~ 102 (241)
T 1k1a_A 85 LACEHRSPTCLRALLDSA 102 (241)
T ss_dssp HHHHTTCHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHcC
Confidence 344566666666666554
No 317
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=32.94 E-value=73 Score=22.28 Aligned_cols=34 Identities=18% Similarity=0.125 Sum_probs=17.8
Q ss_pred CchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHH
Q 010496 133 RMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIE 166 (509)
Q Consensus 133 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 166 (509)
..+.|.++++.+..+.+..|..++.++...|+..
T Consensus 52 ~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~ 85 (97)
T 3ygs_P 52 RRDQARQLIIDLETRGSQALPLFISCLEDTGQDM 85 (97)
T ss_dssp HHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHH
Confidence 4455555555555555555555555554444433
No 318
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=32.81 E-value=1.4e+02 Score=28.39 Aligned_cols=48 Identities=19% Similarity=0.111 Sum_probs=28.3
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHH
Q 010496 394 CRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIR 441 (509)
Q Consensus 394 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 441 (509)
.......+.|...|.++....|.+...|+.|+......|+.-+|.-.|
T Consensus 162 ~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y 209 (497)
T 1ya0_A 162 ARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYY 209 (497)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHH
Confidence 333444566666666666666666666666666666666555554443
No 319
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=31.56 E-value=2.4e+02 Score=25.89 Aligned_cols=78 Identities=15% Similarity=0.133 Sum_probs=37.8
Q ss_pred HHHHHHhcCCchHHHHHHHhcCCC---ChHHHHHHHHHHHhCCCHHHHHHHHhcCCCC---CHhHHHHHHHHHHHcCChH
Q 010496 124 LLDMYAKFGRMDLATVVFDAMRVK---SSFTWNAMIDGYMRRGDIESAVRMFDEMPVR---DAISWTALLNGFVKRGYFE 197 (509)
Q Consensus 124 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~ 197 (509)
.+...+..|+.+-+.-+++.-... +.... +.+...++.|+.+-+.-+++.-..+ +....+ .+...+..|+.+
T Consensus 50 ~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~-t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t-~L~~A~~~g~~~ 127 (437)
T 1n11_A 50 PLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQ-TPLHCAARIGHTNMVKLLLENNANPNLATTAGHT-PLHIAAREGHVE 127 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSC-CHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCC-HHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCC-CHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCc-HHHHHHHcCCHH
Confidence 344455677777777777654322 21111 2333445567776666666643322 211122 233344556665
Q ss_pred HHHHHH
Q 010496 198 EALECF 203 (509)
Q Consensus 198 ~A~~~~ 203 (509)
-+..++
T Consensus 128 ~v~~Ll 133 (437)
T 1n11_A 128 TVLALL 133 (437)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554444
No 320
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=29.82 E-value=1.7e+02 Score=22.34 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=25.8
Q ss_pred HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhcCCCCCHHHHHHHHHHHHhcCC
Q 010496 307 MQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIYRVSPRIEHYGCIVDLYSRAGR 367 (509)
Q Consensus 307 m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 367 (509)
+.+.|.+++..=. .++..+...+..-.|.++++.+.+ .+...+..|...-+..+...|-
T Consensus 18 l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~-~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 18 IKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQ-KDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHH-HSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHH-hCCCCCHhhHHHHHHHHHHCCc
Confidence 3445555443322 233333344445556666666653 2333344444444455555553
No 321
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=29.31 E-value=1.4e+02 Score=22.62 Aligned_cols=61 Identities=11% Similarity=0.018 Sum_probs=37.5
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 010496 204 REMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGC 265 (509)
Q Consensus 204 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 265 (509)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 11 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 71 (145)
T 2fe3_A 11 ETLKETGVRITPQRH-AILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGL 71 (145)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCC
Confidence 345566766665443 3344444455566777788777776655566666666677777664
No 322
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=28.46 E-value=1.9e+02 Score=22.11 Aligned_cols=63 Identities=10% Similarity=0.065 Sum_probs=41.6
Q ss_pred HHHhhCCCCCCcccHHHHHHhhcCCCcc-chhHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCch
Q 010496 69 TRMTLHGTNPNHITFITLLSGCADFPSQ-CLFLGAMIHGLVCKLGLDRNNVMVGTALLDMYAKFGRMD 135 (509)
Q Consensus 69 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 135 (509)
+.|.+.|+.++..-. .++..+... + ..-.|.++++.+.+.+...+ ..+...-++.+...|-+.
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~--~~~h~sa~ei~~~l~~~~~~is-~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQP--ECQHISAEELYKKLIDLGEEIG-LATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSG--GGSSEEHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhC--CCCCCCHHHHHHHHHHhCCCCC-HHHHHHHHHHHHHCCcEE
Confidence 446677877766544 344455444 4 56778889988888876555 666666677777777544
No 323
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=28.32 E-value=2.1e+02 Score=22.28 Aligned_cols=51 Identities=12% Similarity=-0.007 Sum_probs=32.5
Q ss_pred CCChHHHHHHHHHHHHCCCCC--CHHHHHHHHH-H-----HhccCCHHHHHHHHHHhHH
Q 010496 294 NGFVGEALEYFNSMQKEGFKP--DGVSFTGALT-A-----CSHAGLIEDGLRYFDIMKK 344 (509)
Q Consensus 294 ~~~~~~A~~~~~~m~~~g~~p--~~~~~~~li~-~-----~~~~~~~~~a~~~~~~~~~ 344 (509)
.|++-+|.++++..-.....+ ....|..||+ . ..+.|+...|..++.+...
T Consensus 45 ~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 45 SGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp TTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 477777777777776654444 4445555665 2 2356777777777777654
No 324
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=27.49 E-value=1.4e+02 Score=23.18 Aligned_cols=71 Identities=15% Similarity=0.112 Sum_probs=40.2
Q ss_pred HHHHHHHHH-HHHCCCCCCHHHHHHHHHHHhccCCHHHHHHHHHHhHHhc-CCCCCHHHHHHHHHHHHhcCChH
Q 010496 298 GEALEYFNS-MQKEGFKPDGVSFTGALTACSHAGLIEDGLRYFDIMKKIY-RVSPRIEHYGCIVDLYSRAGRLE 369 (509)
Q Consensus 298 ~~A~~~~~~-m~~~g~~p~~~~~~~li~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~ 369 (509)
+.+++-+.+ +.+.|.+++..= ..++..+...+..-.|.++++.+.+.. +...+..|...-++.+...|-..
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 344443433 345677766543 334555666666777888888877420 33445555555566777777543
No 325
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.97 E-value=2.1e+02 Score=21.79 Aligned_cols=61 Identities=10% Similarity=0.098 Sum_probs=36.3
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 010496 204 REMQISGVEPDYVTIISVLNACANVGTLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGC 265 (509)
Q Consensus 204 ~~m~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 265 (509)
+.+.+.|++++..-. .++..+...+..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 16 ~~l~~~g~r~T~qR~-~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 76 (150)
T 2xig_A 16 MSIKKNGLKNSKQRE-EVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENF 76 (150)
T ss_dssp HHHHHCC--CHHHHH-HHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCc
Confidence 345566666554333 3444555555666777788877776655666666666677777664
No 326
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=26.32 E-value=1.2e+02 Score=26.02 Aligned_cols=16 Identities=13% Similarity=0.183 Sum_probs=7.9
Q ss_pred HHhcCCchHHHHHHHh
Q 010496 128 YAKFGRMDLATVVFDA 143 (509)
Q Consensus 128 ~~~~g~~~~A~~~~~~ 143 (509)
.+..|+.+-+.-+++.
T Consensus 102 A~~~g~~~~v~~Ll~~ 117 (285)
T 3kea_A 102 AVDSGNMQTVKLFVKK 117 (285)
T ss_dssp HHHTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHhc
Confidence 3445555555555444
No 327
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=26.15 E-value=1.4e+02 Score=25.33 Aligned_cols=64 Identities=9% Similarity=-0.069 Sum_probs=37.0
Q ss_pred CccchHHHHHHHHcCCChhHHHHHHHHHhhCCCCC-------CcccHHHHHHhhcCCCccchhHHHHHHHHH
Q 010496 44 PTVQWTSSISRHCRSGRIAEAALEFTRMTLHGTNP-------NHITFITLLSGCADFPSQCLFLGAMIHGLV 108 (509)
Q Consensus 44 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-------~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~ 108 (509)
+..-.+ .+...++.|+.+.+..+++.....+... +...++.|..++.....+..+.+..+++.-
T Consensus 10 d~~g~t-~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 10 RLYDRR-SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp -CCCHH-HHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred Ccccch-HHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 333344 4445577899998888888877666433 334455555555321116666666665554
No 328
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=26.15 E-value=1.8e+02 Score=22.15 Aligned_cols=61 Identities=5% Similarity=0.092 Sum_probs=40.8
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 010496 204 REMQISGVEPDYVTIISVLNACANVG-TLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGC 265 (509)
Q Consensus 204 ~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 265 (509)
+.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+...|-
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 346677877776544 3445555555 667788899888887756666666666667776664
No 329
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=25.92 E-value=2.5e+02 Score=22.84 Aligned_cols=27 Identities=22% Similarity=0.146 Sum_probs=14.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCC
Q 010496 187 LNGFVKRGYFEEALECFREMQISGVEP 213 (509)
Q Consensus 187 i~~~~~~~~~~~A~~~~~~m~~~~~~p 213 (509)
+...+..|+.+.+..+++.+.+.|..+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 344455666666666666555544333
No 330
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.19 E-value=2.5e+02 Score=22.01 Aligned_cols=17 Identities=12% Similarity=0.165 Sum_probs=8.8
Q ss_pred HHhcCCHHHHHHHHHhc
Q 010496 260 YSRCGCIEFARQVFQRM 276 (509)
Q Consensus 260 ~~~~g~~~~a~~~~~~~ 276 (509)
.+..|+.+-+..+++.-
T Consensus 113 A~~~~~~~~v~~Ll~~g 129 (201)
T 3hra_A 113 AAEKGHIDNVKLLLEDG 129 (201)
T ss_dssp HHHTTCHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHcC
Confidence 34455655555555543
No 331
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=25.10 E-value=1.5e+02 Score=23.39 Aligned_cols=84 Identities=10% Similarity=0.017 Sum_probs=35.8
Q ss_pred HHHHHcCCChhHHHHHHHHHhhCCCCCCcccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCCCc--hHHHHHHHHHHH
Q 010496 52 ISRHCRSGRIAEAALEFTRMTLHGTNPNHITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDRNN--VMVGTALLDMYA 129 (509)
Q Consensus 52 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~ 129 (509)
+...+..|+.+....++..-...--..+...++.+..++.. ++.+ +.+.+.+.|..++. ..-. ..+...+
T Consensus 9 L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~---~~~~----~v~~Ll~~g~~~~~~~~~g~-t~l~~A~ 80 (201)
T 3hra_A 9 LLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN---NDIE----IAKALIDRGADINLQNSISD-SPYLYAG 80 (201)
T ss_dssp HHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHH---TCHH----HHHHHHHTTCCTTCCCTTSC-CHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc---CCHH----HHHHHHHcCCCCCCCCCCCC-CHHHHHH
Confidence 33445677777666665432210011222333334433322 4433 34444455544431 1111 1233344
Q ss_pred hcCCchHHHHHHHh
Q 010496 130 KFGRMDLATVVFDA 143 (509)
Q Consensus 130 ~~g~~~~A~~~~~~ 143 (509)
..|+.+-+..+++.
T Consensus 81 ~~~~~~~~~~Ll~~ 94 (201)
T 3hra_A 81 AQGRTEILAYMLKH 94 (201)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHhc
Confidence 55666666666643
No 332
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=25.02 E-value=3.5e+02 Score=23.72 Aligned_cols=26 Identities=12% Similarity=0.317 Sum_probs=16.2
Q ss_pred HHHHHHHHhcCCchHHHHHHHhcCCC
Q 010496 122 TALLDMYAKFGRMDLATVVFDAMRVK 147 (509)
Q Consensus 122 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 147 (509)
..++.-|...|+.++|...++++..|
T Consensus 7 ~~ii~EYf~~~d~~Ea~~~l~el~~p 32 (307)
T 2zu6_B 7 TPIIQEYFEHGDTNEVAEMLRDLNLG 32 (307)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCG
T ss_pred HHHHHHHHcCCCHHHHHHHHHHhCCc
Confidence 34555666666666666666666554
No 333
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=24.93 E-value=2.5e+02 Score=21.90 Aligned_cols=30 Identities=7% Similarity=-0.069 Sum_probs=14.6
Q ss_pred CCHHHHHHHHHHHHHcCCCC--cHhHHHHHHH
Q 010496 229 GTLGIGLWIHRYVLKQDFKD--NVKVCNTLID 258 (509)
Q Consensus 229 ~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 258 (509)
|++-+|.++++.+-...-.+ ....|..||+
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ 77 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQ 77 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 56666666665555443233 3334444444
No 334
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=23.39 E-value=1.6e+02 Score=19.31 Aligned_cols=60 Identities=5% Similarity=0.111 Sum_probs=36.1
Q ss_pred HHHHHcCCCCCHhHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcC
Q 010496 204 REMQISGVEPDYVTIISVLNACANVG-TLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCG 264 (509)
Q Consensus 204 ~~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 264 (509)
+.+.+.|+..+..-. .++..+...+ ..-.+.++++.+.+.+...+..|....+..+.+.|
T Consensus 6 ~~l~~~g~~~t~~r~-~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 6 TALKKAGLKVTLPRL-KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCcCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 345566766665443 4445555543 45566777777777655556666666666666655
No 335
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=23.10 E-value=2.9e+02 Score=22.82 Aligned_cols=93 Identities=5% Similarity=-0.056 Sum_probs=49.7
Q ss_pred HHHHHHcCCChhHHHHHHHHHhhCCCCCCc-------ccHHHHHHhhcCCCccchhHHHHHHHHHHHhCCCC--------
Q 010496 51 SISRHCRSGRIAEAALEFTRMTLHGTNPNH-------ITFITLLSGCADFPSQCLFLGAMIHGLVCKLGLDR-------- 115 (509)
Q Consensus 51 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------- 115 (509)
.+...++.|+.+....+++.+.+.|..++. ...+.|..++.....+..+....+++.-...+...
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~ 84 (256)
T 2etb_A 5 RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCT 84 (256)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccc
Confidence 455567788888888888888777765543 33445555554311155555555555444332111
Q ss_pred -CchHHHHHHHHHHHhcCCchHHHHHHHhc
Q 010496 116 -NNVMVGTALLDMYAKFGRMDLATVVFDAM 144 (509)
Q Consensus 116 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 144 (509)
.+..- ...+...+..|+.+-+..+++.-
T Consensus 85 ~~d~~g-~t~L~~A~~~g~~~~v~~Ll~~g 113 (256)
T 2etb_A 85 DEFYQG-HSALHIAIEKRSLQCVKLLVENG 113 (256)
T ss_dssp STTTTT-CCHHHHHHHTTCHHHHHHHHHTT
T ss_pred cccccC-CCHHHHHHHcCCHHHHHHHHHcC
Confidence 00111 12233445667777666666653
No 336
>2p1h_A APAF-1, apoptotic protease-activating factor 1; folding, unfolding, apoptosis; 1.59A {Homo sapiens} SCOP: a.77.1.3 PDB: 1cww_A 1c15_A 1cy5_A 3ygs_C 2ygs_A
Probab=23.00 E-value=1.9e+02 Score=19.81 Aligned_cols=35 Identities=14% Similarity=0.084 Sum_probs=22.9
Q ss_pred cCCHHHHHHHHHhccCCChhhHHHHHHHHHhCCCh
Q 010496 263 CGCIEFARQVFQRMHKRTLVSWNSIIVGFAVNGFV 297 (509)
Q Consensus 263 ~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 297 (509)
....++|.++++.+..++..+|..++.++...+..
T Consensus 49 ~t~~~kar~Lld~l~~kG~~af~~F~~aL~~~~~~ 83 (94)
T 2p1h_A 49 PTQQQRAAMLIKMILKKDNDSYVSFYNALLHEGYK 83 (94)
T ss_dssp SSHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCH
T ss_pred CChHHHHHHHHHHHHHcCHHHHHHHHHHHHHcCHH
Confidence 45566677777777666666777777666665543
No 337
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=22.54 E-value=1.7e+02 Score=23.80 Aligned_cols=19 Identities=0% Similarity=0.031 Sum_probs=11.0
Q ss_pred HHHHHHcCCChhHHHHHHH
Q 010496 51 SISRHCRSGRIAEAALEFT 69 (509)
Q Consensus 51 li~~~~~~g~~~~A~~~~~ 69 (509)
.+...++.|+.+....+++
T Consensus 6 ~L~~A~~~g~~~~v~~Ll~ 24 (232)
T 2rfa_A 6 PLLLAAKENDVQALSKLLK 24 (232)
T ss_dssp HHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHH
Confidence 3455567777665555544
No 338
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=22.52 E-value=2.3e+02 Score=21.02 Aligned_cols=60 Identities=7% Similarity=0.118 Sum_probs=38.5
Q ss_pred HHHHcCCCCCHhHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCcHhHHHHHHHHHHhcCC
Q 010496 205 EMQISGVEPDYVTIISVLNACANVG-TLGIGLWIHRYVLKQDFKDNVKVCNTLIDLYSRCGC 265 (509)
Q Consensus 205 ~m~~~~~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 265 (509)
.+.+.|++++..-. .++..+...+ ..-.|.++++.+.+.+...+..|...-++.+.+.|-
T Consensus 8 ~l~~~g~r~T~qR~-~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 8 ELRKAGLKVTLPRV-KILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHHTTCCCCHHHH-HHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHCCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 35667777765544 3445555555 667788888888887656666666556666666553
No 339
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=22.48 E-value=2.3e+02 Score=20.60 Aligned_cols=48 Identities=10% Similarity=0.051 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCH
Q 010496 118 VMVGTALLDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDI 165 (509)
Q Consensus 118 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 165 (509)
..+....+.++.+.|+.+....+.+.+..++..+-...+.++.+.|+.
T Consensus 56 ~~vR~~A~~aL~~~~~~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~~ 103 (131)
T 1te4_A 56 WRIRGAAAWIIGNFQDERAVEPLIKLLEDDSGFVRSGAARSLEQIGGE 103 (131)
T ss_dssp HHHHHHHHHHHGGGCSHHHHHHHHHHHHHCCTHHHHHHHHHHHHHCSH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH
Confidence 666666666666666544333333333344555555555555555543
No 340
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=22.46 E-value=2.9e+02 Score=21.89 Aligned_cols=114 Identities=11% Similarity=0.063 Sum_probs=0.0
Q ss_pred HHHHHhcCCchHHHHHHHhcCCCChHHHHHHHHHHHhCCCHHHHHHHHhcCCCCCHhHHHHHHHHHHHcCChHHHHHHHH
Q 010496 125 LDMYAKFGRMDLATVVFDAMRVKSSFTWNAMIDGYMRRGDIESAVRMFDEMPVRDAISWTALLNGFVKRGYFEEALECFR 204 (509)
Q Consensus 125 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~ 204 (509)
+.-+.+-.+.+.+.-+-.-+....+.--..+--.+.-.|.+..++-++..+......-|..| +|-+.+++..|+..++
T Consensus 9 I~Ks~kY~dYdt~~fLsa~L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~~lNT~Ts~YYk~L--Cy~klKdYkkA~~~le 86 (242)
T 3kae_A 9 ICKSIRYRDYETAIFLAACLLPCKPEYRMLMSIVLYLNGEYTRALFHLHKLNTCTSKYYESL--CYKKKKDYKKAIKSLE 86 (242)
T ss_dssp HHHHHHTTCHHHHHHHHHHHC----CTHHHHHHHHHHTTCHHHHHHHHHTCCBHHHHHHHHH--HHHHTTCHHHHHHHHH
T ss_pred HHHHhhcccccHHHHHHHHHccCChHHHhhhhhhhhhcchHhHHHHHHHhcchHHHHHHHHH--HHHHHHHHHHHHHHHH
Q ss_pred HHHHcCCCCC-----------------HhHHHHHHHHHHccCCHHHHHHHHHH
Q 010496 205 EMQISGVEPD-----------------YVTIISVLNACANVGTLGIGLWIHRY 240 (509)
Q Consensus 205 ~m~~~~~~p~-----------------~~~~~~l~~~~~~~~~~~~a~~~~~~ 240 (509)
.+....+..| ...|+.+...|...|+.++|...+..
T Consensus 87 ~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~ 139 (242)
T 3kae_A 87 SILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVR 139 (242)
T ss_dssp HHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhh
No 341
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=22.20 E-value=1e+02 Score=25.25 Aligned_cols=55 Identities=7% Similarity=-0.032 Sum_probs=23.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHcCCchHHHHHHHHHHh
Q 010496 391 LAACRTKGDIILAERLMKYLVDLDPGVDSNYVLLANMYAAVGKWDGAGKIRRTMKG 446 (509)
Q Consensus 391 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 446 (509)
+...+..|+.+-+..+++.-......+.... ..+....+.|+.+-+.-+++...+
T Consensus 181 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~-t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 181 LHWAVLAGNTTVISLLLEAGANVDAQNIKGE-SALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCTTCBCTTSC-BHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCC-CHHHHHHHcCcHHHHHHHHHhhhc
Confidence 3344566776655555544222111121111 223333555666555555544333
No 342
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=20.40 E-value=1.5e+02 Score=21.91 Aligned_cols=44 Identities=14% Similarity=0.112 Sum_probs=24.3
Q ss_pred HHHHHHhCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 010496 287 IIVGFAVNGFVGEALEYFNSMQKEGFKPDGVSFTGALTACSHAG 330 (509)
Q Consensus 287 l~~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~~ 330 (509)
++..+...+..-.|.++++.+.+.+...+..|....+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444555566666666666555555555555555555544
No 343
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=20.05 E-value=1.1e+02 Score=19.16 Aligned_cols=30 Identities=23% Similarity=0.244 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHhhCCCCCCcccHHHHHHhh
Q 010496 61 IAEAALEFTRMTLHGTNPNHITFITLLSGC 90 (509)
Q Consensus 61 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~ 90 (509)
.++|...|.+|++..-.+..-||...+..+
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 367888888887655455667888888877
Done!