BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010497
(509 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8N0X7|SPG20_HUMAN Spartin OS=Homo sapiens GN=SPG20 PE=1 SV=1
Length = 666
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 91/191 (47%), Gaps = 18/191 (9%)
Query: 301 DYSGSVARMIAAGSGQLIKGILWCGDVTVDGLKWGNGFLRKRMGSGSQS-EISPDTIKRI 359
++S VA I +G+ + G++ ++T ++ G LR+R+ + E+SP K +
Sbjct: 418 EWSEKVAHNILSGASWVSWGLVKGAEITGKAIQKGASKLRERIQPEEKPVEVSPAVTKGL 477
Query: 360 KRVKKLTKMSEKVATGILSGVVKVS---GFFTGPIVNSKVGKKFF-----------SLLP 405
K+ T + KV+ ++ GV V+ G P V K G K S L
Sbjct: 478 YIAKQATGGAAKVSQFLVDGVCTVANCVGKELAPHVK-KHGSKLVPESLKKDKDGKSPLD 536
Query: 406 GEIVLA--TLDGFNKVCDAVEVAGRNVMSTTSVVTTGLVSDRYGEQAAKATNEGLDAAGH 463
G +V+A ++ GF+ V +E A + +++ S T V +YG A +AT+ +D+A +
Sbjct: 537 GAMVVAASSVQGFSTVWQGLECAAKCIVNNVSAETVQTVRYKYGYNAGEATHHAVDSAVN 596
Query: 464 AFGTAWAVFKI 474
TA+ + I
Sbjct: 597 VGVTAYNINNI 607
>sp|A0JNJ3|SPG20_BOVIN Spartin OS=Bos taurus GN=SPG20 PE=2 SV=1
Length = 668
Score = 50.8 bits (120), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 18/196 (9%)
Query: 296 APNVEDYSGSVARMIAAGSGQLIKGILWCGDVTVDGLKWGNGFLRKRMGSGSQS-EISPD 354
A + ++S VA I +G+ + G++ + T ++ G LR+R+ + E+SP
Sbjct: 413 AKELPEWSEKVAHNILSGASWVSWGLVKGAEFTGKAIQKGASKLRERIQPEEKPVEVSPA 472
Query: 355 TIKRIKRVKKLTKMSEKVATGILSGVVKVS---GFFTGPIVNSKVGKKFF---------- 401
K + K+ T + KV+ ++ GV V+ G P V K G K
Sbjct: 473 VTKGLYMAKQATGGAAKVSQFLVDGVCTVANCVGKELAPHVK-KHGSKLVPESLKKDRNG 531
Query: 402 -SLLPGEIVLA--TLDGFNKVCDAVEVAGRNVMSTTSVVTTGLVSDRYGEQAAKATNEGL 458
S L G +V+A ++ GF+ V +E A + +++ S T V +YG A +AT+ +
Sbjct: 532 KSTLDGAMVVAASSVQGFSTVWQGLECAAKCIVNNVSAETVQTVRYKYGHTAGEATHNAV 591
Query: 459 DAAGHAFGTAWAVFKI 474
D+A + TA+ + I
Sbjct: 592 DSAINVGVTAYNIDNI 607
>sp|Q8R1X6|SPG20_MOUSE Spartin OS=Mus musculus GN=Spg20 PE=2 SV=1
Length = 671
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 90/191 (47%), Gaps = 18/191 (9%)
Query: 301 DYSGSVARMIAAGSGQLIKGILWCGDVTVDGLKWGNGFLRKRMGSGSQS-EISPDTIKRI 359
++S VA I +G+ + G++ + T ++ G LR+R+ + E+SP + +
Sbjct: 422 EWSEKVAHNILSGASWVSWGLVKGAEFTGKAIQKGASKLRERIQPEEKPVEVSPAVTRGL 481
Query: 360 KRVKKLTKMSEKVATGILSGVVKVS---GFFTGPIVNSKVGKKFF-----------SLLP 405
K+ T + KV+ ++ GV V+ G P V K G K S L
Sbjct: 482 YIAKQATGGAAKVSQLLVDGVCTVANCVGKELAPHVK-KHGSKLVPESLKRDKDGKSALD 540
Query: 406 GEIVLA--TLDGFNKVCDAVEVAGRNVMSTTSVVTTGLVSDRYGEQAAKATNEGLDAAGH 463
G +V+A ++ GF+ V +E A + +++ S T V +YG A +AT+ +D+A +
Sbjct: 541 GAMVVAASSVQGFSTVWQGLECAAKCIVNNVSAETVQTVRYKYGHNAGEATHNAVDSAIN 600
Query: 464 AFGTAWAVFKI 474
TA+ + I
Sbjct: 601 VGLTAYNIDNI 611
>sp|Q5FKI4|SYD_LACAC Aspartate--tRNA ligase OS=Lactobacillus acidophilus (strain ATCC
700396 / NCK56 / N2 / NCFM) GN=aspS PE=3 SV=1
Length = 614
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 6/88 (6%)
Query: 360 KRVKKLTKMSEKVATGILSGVVKVSGFFTGPIV------NSKVGKKFFSLLPGEIVLATL 413
K++ K ++ L+ V G F+GP+ N + KK F L GE+V+
Sbjct: 336 KKIDKKADFIKRFHAKGLAWVKFEDGEFSGPVARFLTDENKEALKKEFDLEGGELVVFVA 395
Query: 414 DGFNKVCDAVEVAGRNVMSTTSVVTTGL 441
D + VCD+++ R T ++ G+
Sbjct: 396 DKWKVVCDSLDHLRREFAKETGIIPKGV 423
>sp|Q7V9J7|MNMG_PROMA tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG
OS=Prochlorococcus marinus (strain SARG / CCMP1375 /
SS120) GN=mnmG PE=3 SV=1
Length = 667
Score = 35.0 bits (79), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 54/123 (43%), Gaps = 15/123 (12%)
Query: 249 YSCFSVQKVKNMGNWEMVAKEMSPEELKSAENRELMGKSSGAYWTALAPNVEDYSGSV-- 306
YS +Q ++ N + ++ E+KS+ NR+ + + S ++ Y GS+
Sbjct: 108 YSIEMLQMLQETPNLSLREAMVTDLEIKSSPNRKKIKEQSEEKTIGQVQGIKTYFGSIYL 167
Query: 307 ARMIAAGSGQLIKGILWCGDVTVDGLKWGN-------------GFLRKRMGSGSQSEISP 353
A+ + +G +KG +W G+ ++D + G GF R+ +G+ +
Sbjct: 168 AKAVILTTGTFLKGKIWIGNQSMDAGRAGEQAATGLTEALQKLGFETSRLKTGTPPRVDR 227
Query: 354 DTI 356
TI
Sbjct: 228 RTI 230
>sp|C4LL70|RPOC_CORK4 DNA-directed RNA polymerase subunit beta' OS=Corynebacterium
kroppenstedtii (strain DSM 44385 / CCUG 35717) GN=rpoC
PE=3 SV=1
Length = 1332
Score = 33.5 bits (75), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 8/67 (11%)
Query: 185 QWPLAKDEPAVKLDDSHYFFTLRV-PENGSLETDQVHHEVLN--YGLTIATK--GQKHLL 239
Q P+A E +KL+D F+TL + P+NG D+V +E L+ GL + + G +H L
Sbjct: 1052 QAPIASTEGTIKLEDDGNFYTLTITPDNGE---DEVVYEKLSKRQGLAVTQEPGGFEHQL 1108
Query: 240 KELDKVL 246
+ D V+
Sbjct: 1109 RTGDHVV 1115
>sp|P23613|HYALP_CAVPO Hyaluronidase PH-20 OS=Cavia porcellus GN=SPAM1 PE=1 SV=1
Length = 529
Score = 33.1 bits (74), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 5/64 (7%)
Query: 82 EVDLSNPEAASASTAASSSPSSL--YPSVDMKD---MAENLFPEDDAVSHITANAPPSEH 136
+D+ N + + TA + ++ +PS+D D + ++ D++S IT++APPS H
Sbjct: 446 RLDVHNVRSVNVCTANNICIDAVLNFPSLDDDDEPPITDDTSQNQDSISDITSSAPPSSH 505
Query: 137 VLVK 140
+L K
Sbjct: 506 ILPK 509
>sp|Q8YM40|Y5100_NOSS1 UPF0192 protein all5100 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576)
GN=all5100 PE=3 SV=1
Length = 1906
Score = 32.7 bits (73), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 155 VELASGELYIVSLSQGDNVVAVFARVGDEIQWPLAKDEPAVKLDDS--HYFFTLRVPENG 212
++LAS + ++ + +G N F ++ + PL K+EP K D S ++ + LR +N
Sbjct: 184 LDLASVQEHLQLIPEGKNEGLRFQVTLNKEEKPLDKEEPLKKFDPSARNWIYNLRPQKN- 242
Query: 213 SLETDQVHHEVLNYGLTIATKGQKHLLKELDKVLETYSCFSVQKVKNMG 261
L+T + V + G+ A G +E L TYS + QK+ G
Sbjct: 243 -LKTATRYRLVFSPGIRPAY-GNLVTDREFVSKLSTYSPLAFQKINFYG 289
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.129 0.365
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 177,978,099
Number of Sequences: 539616
Number of extensions: 7273317
Number of successful extensions: 18651
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 33
Number of HSP's that attempted gapping in prelim test: 18559
Number of HSP's gapped (non-prelim): 114
length of query: 509
length of database: 191,569,459
effective HSP length: 122
effective length of query: 387
effective length of database: 125,736,307
effective search space: 48659950809
effective search space used: 48659950809
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)