Query 010497
Match_columns 509
No_of_seqs 147 out of 169
Neff 4.4
Searched_HMMs 46136
Date Fri Mar 29 01:13:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010497.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010497hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2709 Uncharacterized conser 100.0 2.4E-64 5.2E-69 519.0 9.8 335 135-507 181-540 (560)
2 PF06911 Senescence: Senescenc 100.0 9.4E-44 2E-48 333.1 7.3 169 309-479 1-179 (179)
3 PF12634 Inp1: Inheritance of 98.3 4.6E-06 9.9E-11 77.8 10.7 85 153-253 56-144 (145)
4 PF06911 Senescence: Senescenc 74.2 15 0.00032 34.8 7.9 153 302-466 5-172 (179)
5 KOG2993 Cytoplasm to vacuole t 42.2 95 0.0021 39.7 8.6 153 310-503 1558-1717(1738)
6 KOG2709 Uncharacterized conser 32.2 23 0.0005 39.2 1.3 100 349-450 306-435 (560)
7 PF10709 DUF2511: Protein of u 31.0 26 0.00055 30.7 1.2 26 179-206 6-31 (87)
8 KOG0248 Cytoplasmic protein Ma 28.0 21 0.00045 41.6 0.2 25 17-42 611-635 (936)
9 PF08553 VID27: VID27 cytoplas 24.8 5.6E+02 0.012 30.7 10.8 109 132-249 10-153 (794)
10 PF00638 Ran_BP1: RanBP1 domai 18.8 6.4E+02 0.014 22.1 9.1 39 132-171 6-46 (122)
No 1
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=2.4e-64 Score=519.04 Aligned_cols=335 Identities=22% Similarity=0.277 Sum_probs=289.9
Q ss_pred cceEEEec-CeEEEEecCC-ccccccccceEEEEEecCCcc-----eEEEEEecCccccccCCC-CCeeeecCceeEEec
Q 010497 135 EHVLVKIP-GAIVHLIERE-QSVELASGELYIVSLSQGDNV-----VAVFARVGDEIQWPLAKD-EPAVKLDDSHYFFTL 206 (509)
Q Consensus 135 eE~Ll~IP-Gvql~lId~~-~Sv~la~G~L~Ivr~~q~~~~-----~a~flqVGD~~qwPL~kD-~PVlKld~g~Y~Fsl 206 (509)
..+|+.|| |+|||+|++. ++.|.+|+||+|+||.|...+ ..+|+|||| |+|||+++ +||++|..|+|||++
T Consensus 181 ~g~i~~ip~gvq~f~V~~~~~~ap~~p~yL~i~rF~q~S~~~~~n~~~af~qv~~-WlYPLvp~~tpvl~~e~GAy~fpd 259 (560)
T KOG2709|consen 181 AGLIYFIPEGVQLFTVDGEKTTAPTAPTYLQILRFPQPSDGGASNDTLAFMQVGP-WLYPLVPAKTPVLRNEFGAYLFPD 259 (560)
T ss_pred cceEEEccCCeEEEEeccccccCCCCCceeEEEEecCCCCCccccCCcccceecc-cccccCcccCcceecccceEecCC
Confidence 34899999 9999999999 889999999999999988554 358999999 99999999 999999999999977
Q ss_pred cCCCCCCCcccccCCcceeEEEEeeCCcch-HHHHHHHHHHhhcCcccccccccCCcchhhhhhcChhhhhhhhhhhccc
Q 010497 207 RVPENGSLETDQVHHEVLNYGLTIATKGQK-HLLKELDKVLETYSCFSVQKVKNMGNWEMVAKEMSPEELKSAENRELMG 285 (509)
Q Consensus 207 ~~P~~~~~~~d~~~~~~lsYGVtlss~~~~-~~l~~Ld~iL~q~S~Fsvq~~~~~~~~~~~~~~~~~~~~~g~~kk~~~e 285 (509)
++|+.+ +..+||+|++++++ ..+++|+.+|+.++||..+.... .++ .++...|
T Consensus 260 ~~~q~p----------g~~vgi~Lsse~Q~~r~~~Ele~~~q~f~D~le~a~~~--tv~---------ql~~~n~----- 313 (560)
T KOG2709|consen 260 PTPQNP----------GMTVGILLSSEIQERRLIEELEIVLQEFTDFLEQAEPS--TVL---------QLEEKNR----- 313 (560)
T ss_pred CcccCC----------CCEEEEEEcchhhhhhhHHHHHHHHHHHHHHHHhhCCc--cee---------ecccccc-----
Confidence 777742 57779999999965 46889999999999998775321 111 0000000
Q ss_pred cCccccccccCCCcccchHHHHHHHHhhhhhhhhheeechhhhhhhhhccccccccccCCCCC-cccChHHHHHHHHHhh
Q 010497 286 KSSGAYWTALAPNVEDYSGSVARMIAAGSGQLIKGILWCGDVTVDGLKWGNGFLRKRMGSGSQ-SEISPDTIKRIKRVKK 364 (509)
Q Consensus 286 ~~~~~~W~~~AP~VedyS~kvAk~Ia~Gs~~IsrGIv~~se~~~~~IqkGa~~lr~ri~P~~k-~~VsP~t~k~Ikrakk 364 (509)
+---+|-.---||++|++.|++|++||+||+++|++.++++|+++++++|.++.|+++ ++|||.+.+++.++++
T Consensus 314 -----qRaglAsDTvS~Se~Vs~~iisga~~iawglv~gae~tg~~v~~~~~~~r~~~~p~~kp~qVsp~V~~sv~~a~k 388 (560)
T KOG2709|consen 314 -----QRAGLASDTVSISETVSNFIISGAQKIAWGLVTGAERTGSRVEDNGEQYRTTLIPTDKPMQVSPVVKGSVVYAHK 388 (560)
T ss_pred -----ccccccccccchHHHHHHHHhhhhhHhhhhhccchhhhhhHHhcCcHhHhhhcCccCCCcccCccccceEEEeee
Confidence 0001111222399999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred hhhhHHHHHHHHhcceeeeecccccccccC--ccCcccc-----------ccCch--hHHhhhhhhHHHHHHHHHHHHHH
Q 010497 365 LTKMSEKVATGILSGVVKVSGFFTGPIVNS--KVGKKFF-----------SLLPG--EIVLATLDGFNKVCDAVEVAGRN 429 (509)
Q Consensus 365 ~S~~a~kvS~~ll~gV~~Vag~vga~la~s--K~Gkk~~-----------s~~pG--eV~~aSL~aFstV~DalE~AgK~ 429 (509)
.|..+++++..+.++|+.++.+||.-++++ |+|.|+. +.+.| +|+.+++.||+|||+|||+++|+
T Consensus 389 ~Th~aa~~~~~l~~~v~T~~~~VG~~laph~kkqgskl~q~~fg~dke~~s~~~Gam~iaag~V~GvsTVw~gLE~~ak~ 468 (560)
T KOG2709|consen 389 GTHKAAAKEEILKNIVDTKMDKVGDMLAPHGKKQGSKLAQRRFGDDKESGSLVSGAMEIAAGGVTGVSTVWMGLEDGAKH 468 (560)
T ss_pred ccchhhHHHHHHHhhhhHHHHHHHHhhhhhhHHHhhHHHHHhhcCCccCCCcccceeeeecccccchhHHHhhhhHHHHH
Confidence 999999999999999999999999999875 6676654 34566 59999999999999999999999
Q ss_pred HhhcccchhhhhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCcccccchHHHHHHHHHHHHHhhhhcc
Q 010497 430 VMSTTSVVTTGLVSDRYGEQAAKATNEGLDAAGHAFGTAWAVFKIRQAFNPKSAFKPTSLAKAAVKANAAELKAKQSK 507 (509)
Q Consensus 430 ll~StS~aTt~vV~HKYGeeAGeaT~dal~aAGhv~~TAwnv~kIrka~npKs~lKpts~aK~aaka~~~~~k~~~~~ 507 (509)
|++++|+.|+++|+||||++||++|||+|++||||+.+|+||++|+ ||+++|++ |++|+++++.+||.-..|
T Consensus 469 l~~sis~~tVq~v~~KYG~~ag~~thha~d~agnv~v~a~n~n~ig----pk~vakkm--a~~tG~~~vsDykr~~rk 540 (560)
T KOG2709|consen 469 LCRSISNQTVQNVKLKYGDDAGDTTHHALDAAGNVTVAAANLNDIG----PKSVAKKM--ARKTGIQMVSDYKRHSRK 540 (560)
T ss_pred HHHhhhHhHhhHhhhhhcccccchhhhhhhhccceEEEeehhcccC----HHHHHHHH--HHHhhHHHHHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999988 99999987 999999999999754433
No 2
>PF06911 Senescence: Senescence-associated protein; InterPro: IPR009686 This domain is found in a number of plant senescence-associated proteins of approximately 450 residues in length. In Hemerocallis, petals have a genetically based program that leads to senescence and cell death approximately 24 hours after the, flower opens, and it is believed that senescence proteins produced around that time have a role in this program []. This domain is also found in a number of Spartin proteins which may be implicated in endosomal trafficking, or microtubule dynamics, or both [].
Probab=100.00 E-value=9.4e-44 Score=333.12 Aligned_cols=169 Identities=38% Similarity=0.577 Sum_probs=159.3
Q ss_pred HHHhhhhhhhhheeechhhhhhhhhccccccccccCCCCC-cccChHHHHHHHHHhhhhhhHHHHHHHHhcceeeeeccc
Q 010497 309 MIAAGSGQLIKGILWCGDVTVDGLKWGNGFLRKRMGSGSQ-SEISPDTIKRIKRVKKLTKMSEKVATGILSGVVKVSGFF 387 (509)
Q Consensus 309 ~Ia~Gs~~IsrGIv~~se~~~~~IqkGa~~lr~ri~P~~k-~~VsP~t~k~Ikrakk~S~~a~kvS~~ll~gV~~Vag~v 387 (509)
+|++|+++|+|||+||+++++++|++|+++|+++++|.++ ++|+|.|+++|+++|++|+++++||+++|++|+++++++
T Consensus 1 ~I~~Ga~~is~gI~~~s~~~a~~i~~g~~~~~~~~~p~~~p~~vsp~t~~~~~~~~~~s~~a~~vs~~~l~~v~~~~~~v 80 (179)
T PF06911_consen 1 GIASGAGWISRGIVTGSEYTAKGIQKGGEYLRSKIKPNEKPVEVSPSTKKRVRRAKKVSKKAAKVSSKVLNGVGKVAGNV 80 (179)
T ss_pred CccccHHHHHHHHHHHHHHHHHHHHHhHHHHHhhCCCCCCCCCCCHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred ccccccCccC--------ccccccCchhHHhhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhhhccchhHHHHHHHHHh
Q 010497 388 TGPIVNSKVG--------KKFFSLLPGEIVLATLDGFNKVCDAVEVAGRNVMSTTSVVTTGLVSDRYGEQAAKATNEGLD 459 (509)
Q Consensus 388 ga~la~sK~G--------kk~~s~~pGeV~~aSL~aFstV~DalE~AgK~ll~StS~aTt~vV~HKYGeeAGeaT~dal~ 459 (509)
++.++++..+ +.+... ++ |+++||+||+|||||||+|+|+|+++++++|+++|+||||++|||+|+|+|+
T Consensus 81 g~~l~~~~~~~~~~~~~~~~~~~~-~~-v~~~s~~a~~tV~~gle~a~k~l~~s~~~~t~~vV~hkYG~~Ag~~t~~~~~ 158 (179)
T PF06911_consen 81 GSKLAKSVKGKGSDGKDNKKFDGA-RP-VANASLDAFSTVWDGLEEAGKILLSSTSDATVDVVEHKYGEEAGEVTQDSLG 158 (179)
T ss_pred HHHHhhcccCCCCCcccCCccccH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHH
Confidence 9999998666 344333 33 9999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHh-hhhcC
Q 010497 460 AAGHAFGTAWAVFKI-RQAFN 479 (509)
Q Consensus 460 aAGhv~~TAwnv~kI-rka~n 479 (509)
++||++.||||+++| |||||
T Consensus 159 ~~gnv~~ta~~v~~i~~kal~ 179 (179)
T PF06911_consen 159 TAGNVGLTAWNVRKIGRKALL 179 (179)
T ss_pred hhhhHHHHHhhhhccchhhcC
Confidence 999999999999999 66654
No 3
>PF12634 Inp1: Inheritance of peroxisomes protein 1; InterPro: IPR024758 Inp1 is a peroxisomal membrane protein that binds Pex25p, Pex30p, and Vps1p, all of which are involved in controlling peroxisome division. The levels of Inp1p vary with the cell cycle, and Inp1 acts as a factor that retains peroxisomes in cells and controls peroxisome division []. Inp1p promotes the retention of peroxisomes in mother cells and buds of budding yeast by attaching peroxisomes to as-yet-unidentified cortical structures [].; GO: 0045033 peroxisome inheritance, 0005780 extrinsic to intraperoxisomal membrane
Probab=98.32 E-value=4.6e-06 Score=77.75 Aligned_cols=85 Identities=22% Similarity=0.393 Sum_probs=66.6
Q ss_pred ccccccccceEEEEEecCCcceEEEEEecCccccccCCCCCeeeec--CceeEEeccCCCCCCCcccccCCcceeEEEEe
Q 010497 153 QSVELASGELYIVSLSQGDNVVAVFARVGDEIQWPLAKDEPAVKLD--DSHYFFTLRVPENGSLETDQVHHEVLNYGLTI 230 (509)
Q Consensus 153 ~Sv~la~G~L~Ivr~~q~~~~~a~flqVGD~~qwPL~kD~PVlKld--~g~Y~Fsl~~P~~~~~~~d~~~~~~lsYGVtl 230 (509)
....++.|.|+|+++... .++||++|+.|.|||++-.++.++| .+.|++.++-|. -+|-|-|
T Consensus 56 ~~~~~a~G~leIyqi~~~---~v~fLs~G~~~v~PiLPK~q~~~vd~~~~kFvl~~~nPe-------------rYwrIe~ 119 (145)
T PF12634_consen 56 TERLLAHGPLEIYQIPGS---DVAFLSCGGSIVHPILPKLQCWRVDGESSKFVLPIRNPE-------------RYWRIEF 119 (145)
T ss_pred ceeEEecCCEEEEEecCC---ceeeeecCchheecccccccEEEEcCCCcEEEEEcCCCC-------------cEEEEEe
Confidence 445699999999999877 3579999933999999999999995 445666554444 2678888
Q ss_pred eCC--cchHHHHHHHHHHhhcCccc
Q 010497 231 ATK--GQKHLLKELDKVLETYSCFS 253 (509)
Q Consensus 231 ss~--~~~~~l~~Ld~iL~q~S~Fs 253 (509)
+.. .+.+.+++|+.+|++...|.
T Consensus 120 ~~~~~e~~~~i~~l~~vl~~i~~y~ 144 (145)
T PF12634_consen 120 LSSTDEDKEVIEELESVLSKICQYE 144 (145)
T ss_pred cCCChhHHHHHHHHHHHHHHHheec
Confidence 863 34566899999999999885
No 4
>PF06911 Senescence: Senescence-associated protein; InterPro: IPR009686 This domain is found in a number of plant senescence-associated proteins of approximately 450 residues in length. In Hemerocallis, petals have a genetically based program that leads to senescence and cell death approximately 24 hours after the, flower opens, and it is believed that senescence proteins produced around that time have a role in this program []. This domain is also found in a number of Spartin proteins which may be implicated in endosomal trafficking, or microtubule dynamics, or both [].
Probab=74.16 E-value=15 Score=34.84 Aligned_cols=153 Identities=17% Similarity=0.122 Sum_probs=79.5
Q ss_pred chHHHHHHHHhhhhhhhhheeechhhhhhhhhccccccccccCCCCCcccChHHHHHHHHHhhh-hhhHHHHHHHHhcce
Q 010497 302 YSGSVARMIAAGSGQLIKGILWCGDVTVDGLKWGNGFLRKRMGSGSQSEISPDTIKRIKRVKKL-TKMSEKVATGILSGV 380 (509)
Q Consensus 302 yS~kvAk~Ia~Gs~~IsrGIv~~se~~~~~IqkGa~~lr~ri~P~~k~~VsP~t~k~Ikrakk~-S~~a~kvS~~ll~gV 380 (509)
-++.++++|..|+++++++|-++++++-+.++....-+. +.|.-+ +-.++++++-+. -+++..+...+....
T Consensus 5 Ga~~is~gI~~~s~~~a~~i~~g~~~~~~~~~p~~~p~~--vsp~t~-----~~~~~~~~~s~~a~~vs~~~l~~v~~~~ 77 (179)
T PF06911_consen 5 GAGWISRGIVTGSEYTAKGIQKGGEYLRSKIKPNEKPVE--VSPSTK-----KRVRRAKKVSKKAAKVSSKVLNGVGKVA 77 (179)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHHHHhhCCCCCCCCC--CCHHHH-----HHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999876443111 122211 112233332111 122233333333333
Q ss_pred eeeeccccccccc--------Cc-cCc-ccc-ccCc--hhHHhhhhhhHHHHHHHHHHHHHHHhh-cccchhhhhhhhcc
Q 010497 381 VKVSGFFTGPIVN--------SK-VGK-KFF-SLLP--GEIVLATLDGFNKVCDAVEVAGRNVMS-TTSVVTTGLVSDRY 446 (509)
Q Consensus 381 ~~Vag~vga~la~--------sK-~Gk-k~~-s~~p--GeV~~aSL~aFstV~DalE~AgK~ll~-StS~aTt~vV~HKY 446 (509)
+.++..++..+.+ .. .+. .+. +.+. +.|+-+=-+|-..|++++-.+...+.. -=...+.++.
T Consensus 78 ~~vg~~l~~~~~~~~~~~~~~~~~~~~~~v~~~s~~a~~tV~~gle~a~k~l~~s~~~~t~~vV~hkYG~~Ag~~t---- 153 (179)
T PF06911_consen 78 GNVGSKLAKSVKGKGSDGKDNKKFDGARPVANASLDAFSTVWDGLEEAGKILLSSTSDATVDVVEHKYGEEAGEVT---- 153 (179)
T ss_pred HHHHHHHhhcccCCCCCcccCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHH----
Confidence 3333333332222 11 111 111 1122 234444445677777777555555544 4455555555
Q ss_pred chhHHHHHHHHHhhhhhHHH
Q 010497 447 GEQAAKATNEGLDAAGHAFG 466 (509)
Q Consensus 447 GeeAGeaT~dal~aAGhv~~ 466 (509)
+++.+.+.|...++.|+-+
T Consensus 154 -~~~~~~~gnv~~ta~~v~~ 172 (179)
T PF06911_consen 154 -QDSLGTAGNVGLTAWNVRK 172 (179)
T ss_pred -HHHHHhhhhHHHHHhhhhc
Confidence 4556666676677776654
No 5
>KOG2993 consensus Cytoplasm to vacuole targeting protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.23 E-value=95 Score=39.65 Aligned_cols=153 Identities=17% Similarity=0.191 Sum_probs=89.0
Q ss_pred HHhhhhhhhhheeech--h-hhhhhhhccccccccccCCCCCcccChHHHHHHHHHhhhhhhHHHH---HHHHhcceeee
Q 010497 310 IAAGSGQLIKGILWCG--D-VTVDGLKWGNGFLRKRMGSGSQSEISPDTIKRIKRVKKLTKMSEKV---ATGILSGVVKV 383 (509)
Q Consensus 310 Ia~Gs~~IsrGIv~~s--e-~~~~~IqkGa~~lr~ri~P~~k~~VsP~t~k~Ikrakk~S~~a~kv---S~~ll~gV~~V 383 (509)
|..|...|.|.-+-.- | ..++++|+|+..+.+++ ++.-+....+++.++..+ +..++++..
T Consensus 1558 L~~g~kdLv~~PIe~yrkDgrlvrglq~G~~~F~~st-----------s~~av~L~~~l~~g~qa~ae~te~~l~~~~-- 1624 (1738)
T KOG2993|consen 1558 LGQGFKDLVWLPIEQYRKDGRLVRGLQRGAASFLPST-----------SLAAVGLGVRLTQGTQALAETTEDMLSPGD-- 1624 (1738)
T ss_pred HHHHHHHHHhhhHHHhhccceeeecccccchhhhhHh-----------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--
Confidence 4555555655544321 2 45666777777666543 334444444444433333 334444442
Q ss_pred ecccccccccCccCccccccCchhHHhhhhhhHHHHHHHHHHHHHHHhhcccchhhhhhhhc-cchhHHHHHHHHHhhhh
Q 010497 384 SGFFTGPIVNSKVGKKFFSLLPGEIVLATLDGFNKVCDAVEVAGRNVMSTTSVVTTGLVSDR-YGEQAAKATNEGLDAAG 462 (509)
Q Consensus 384 ag~vga~la~sK~Gkk~~s~~pGeV~~aSL~aFstV~DalE~AgK~ll~StS~aTt~vV~HK-YGeeAGeaT~dal~aAG 462 (509)
..+++..+++.|+......|-++=-+=..|.+.|.||+-.++..|+.+-. +.=.|| ||--||.|
T Consensus 1625 --~s~r~~~~~r~~~~~~a~QP~dlr~Gl~kAYs~l~~Gi~~ta~tL~~aa~----~~~~~k~~~gav~~V--------- 1689 (1738)
T KOG2993|consen 1625 --PSTRPVKRSRFRSSRRAMQPTDLREGLAKAYSSLKDGIHDTADTLERAAQ----EEHDSKGLGGAVGTV--------- 1689 (1738)
T ss_pred --CCcccccccccchhhhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hhhhccCcchHHHHH---------
Confidence 24444555566665556677766666667999999999999999987432 222222 22111111
Q ss_pred hHHHHHHHHHHhhhhcCCCcccccchHHHHHHHHHHHHHhh
Q 010497 463 HAFGTAWAVFKIRQAFNPKSAFKPTSLAKAAVKANAAELKA 503 (509)
Q Consensus 463 hv~~TAwnv~kIrka~npKs~lKpts~aK~aaka~~~~~k~ 503 (509)
+|++ |-+++||-.+|-+|...++-.++.
T Consensus 1690 -----------~R~~--P~avv~PlI~ATeAts~~LgGlrN 1717 (1738)
T KOG2993|consen 1690 -----------VRQA--PPAVVKPLIGATEATSKTLGGLRN 1717 (1738)
T ss_pred -----------HhhC--chhhhhhhHHHHHHHHHHHHHHHh
Confidence 2444 788889998888888888776663
No 6
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.16 E-value=23 Score=39.20 Aligned_cols=100 Identities=19% Similarity=0.228 Sum_probs=62.5
Q ss_pred cccChHHHHHHHHHhhhhhhHHHHHHHHhcceeeeecccccccccCccCcccc-------c-c----Cc-----------
Q 010497 349 SEISPDTIKRIKRVKKLTKMSEKVATGILSGVVKVSGFFTGPIVNSKVGKKFF-------S-L----LP----------- 405 (509)
Q Consensus 349 ~~VsP~t~k~Ikrakk~S~~a~kvS~~ll~gV~~Vag~vga~la~sK~Gkk~~-------s-~----~p----------- 405 (509)
.+......+|-.+|+..+..+++||.++++|.-+|+-.+-..-. +.|+.+. . + +|
T Consensus 306 ~ql~~~n~qRaglAsDTvS~Se~Vs~~iisga~~iawglv~gae--~tg~~v~~~~~~~r~~~~p~~kp~qVsp~V~~sv 383 (560)
T KOG2709|consen 306 LQLEEKNRQRAGLASDTVSISETVSNFIISGAQKIAWGLVTGAE--RTGSRVEDNGEQYRTTLIPTDKPMQVSPVVKGSV 383 (560)
T ss_pred eeccccccccccccccccchHHHHHHHHhhhhhHhhhhhccchh--hhhhHHhcCcHhHhhhcCccCCCcccCccccceE
Confidence 44444455666777777778888888888887776644422111 2333322 1 0 01
Q ss_pred -----hhHHhhhhhh--HHHHHHHHHHHHHHHhhcccchhhhhhhhccchhH
Q 010497 406 -----GEIVLATLDG--FNKVCDAVEVAGRNVMSTTSVVTTGLVSDRYGEQA 450 (509)
Q Consensus 406 -----GeV~~aSL~a--FstV~DalE~AgK~ll~StS~aTt~vV~HKYGeeA 450 (509)
|.-..+.+.. .+.|+..+.+-|+-+..-+...-+..+..+||++-
T Consensus 384 ~~a~k~Th~aa~~~~~l~~~v~T~~~~VG~~laph~kkqgskl~q~~fg~dk 435 (560)
T KOG2709|consen 384 VYAHKGTHKAAAKEEILKNIVDTKMDKVGDMLAPHGKKQGSKLAQRRFGDDK 435 (560)
T ss_pred EEeeeccchhhHHHHHHHhhhhHHHHHHHHhhhhhhHHHhhHHHHHhhcCCc
Confidence 1112233333 35677788888999988888889999999999875
No 7
>PF10709 DUF2511: Protein of unknown function (DUF2511); InterPro: IPR019648 This entry is represented by Bacteriophage PsP3, Gp28. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=31.00 E-value=26 Score=30.70 Aligned_cols=26 Identities=23% Similarity=0.661 Sum_probs=22.8
Q ss_pred EecCccccccCCCCCeeeecCceeEEec
Q 010497 179 RVGDEIQWPLAKDEPAVKLDDSHYFFTL 206 (509)
Q Consensus 179 qVGD~~qwPL~kD~PVlKld~g~Y~Fsl 206 (509)
+.|+ .|||+.++-.|.|..++++|..
T Consensus 6 ~fG~--~Wpft~eev~l~C~~~~alfv~ 31 (87)
T PF10709_consen 6 EFGD--KWPFTVEEVMLECRPGNALFVI 31 (87)
T ss_pred HccC--CCCceeeeEEEEEcCCCEEEEE
Confidence 4566 8999999999999999999955
No 8
>KOG0248 consensus Cytoplasmic protein Max-1, contains PH, MyTH4 and FERM domains [Cytoskeleton]
Probab=28.02 E-value=21 Score=41.58 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=20.2
Q ss_pred ceeEEEeeCCCCCCCCCCcccccccc
Q 010497 17 SITRILLLPPRHHTRSPFSFPVHFPS 42 (509)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 42 (509)
.|+-|||--|-|| .-|||.|||||.
T Consensus 611 Ev~S~LlRnp~hh-slPfSIpVhf~N 635 (936)
T KOG0248|consen 611 EVTSVLTRDVTRT-KFPHSISVKLPN 635 (936)
T ss_pred eehhhhhcCcccc-cCCcceeeeccC
Confidence 4677788788766 579999999996
No 9
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=24.79 E-value=5.6e+02 Score=30.74 Aligned_cols=109 Identities=14% Similarity=0.091 Sum_probs=0.0
Q ss_pred CCCcceEEEecCeEEEEec-----CCccccccc-cceEEEEEecCCcceEEEEEecC-----------------------
Q 010497 132 PPSEHVLVKIPGAIVHLIE-----REQSVELAS-GELYIVSLSQGDNVVAVFARVGD----------------------- 182 (509)
Q Consensus 132 ~~~eE~Ll~IPGvql~lId-----~~~Sv~la~-G~L~Ivr~~q~~~~~a~flqVGD----------------------- 182 (509)
..+.++|+.||-=||||+- .+.+--|+. ..++|-|..+.-.-=-++-||.+
T Consensus 10 ~~~~~eli~IP~GqlyL~Rsp~SpKg~~EcIynDA~asIRrT~~~f~YQLvV~RvyeegE~el~~~ed~eDd~~s~~s~~ 89 (794)
T PF08553_consen 10 SGSKEELISIPSGQLYLVRSPQSPKGSSECIYNDAAASIRRTGQEFQYQLVVQRVYEEGEEELDDEEDDEDDEISADSLQ 89 (794)
T ss_pred CCCchhEEEecCCcEEEEecCCCCCcceeeeecceeeeeEecCCCceEEEEEEEecccccccccccccccccchhhhccc
Q ss_pred ----ccccccCCC-CCeeeecC-ceeEEeccCCCCCCCcccccCCcceeEEEEeeCCcchHHHHHHHHHHhhc
Q 010497 183 ----EIQWPLAKD-EPAVKLDD-SHYFFTLRVPENGSLETDQVHHEVLNYGLTIATKGQKHLLKELDKVLETY 249 (509)
Q Consensus 183 ----~~qwPL~kD-~PVlKld~-g~Y~Fsl~~P~~~~~~~d~~~~~~lsYGVtlss~~~~~~l~~Ld~iL~q~ 249 (509)
+|.++|..+ .--..... |...|+-+-..+. .+--|=-+..++.+....+.|+.++.+|
T Consensus 90 s~~dE~~FlldE~L~fr~~~~~~G~~vlaWrDl~GD---------~gd~fEFV~d~~v~~~~v~~F~~~~y~C 153 (794)
T PF08553_consen 90 SKKDEWTFLLDESLHFRKEWREGGEKVLAWRDLSGD---------EGDLFEFVCDSDVPLSDVEQFELTAYRC 153 (794)
T ss_pred cCcceEEEECccccceeEEecCCCcEEEEEeCCCCC---------CCceEEEEcCCCCCHHHHHHHHHHHHHH
No 10
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=18.83 E-value=6.4e+02 Score=22.10 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=31.9
Q ss_pred CCCcceEEEecCeEEEEecCC--ccccccccceEEEEEecCC
Q 010497 132 PPSEHVLVKIPGAIVHLIERE--QSVELASGELYIVSLSQGD 171 (509)
Q Consensus 132 ~~~eE~Ll~IPGvql~lId~~--~Sv~la~G~L~Ivr~~q~~ 171 (509)
+-+|++|+... |.||..+.+ .=....-|.|+|.+-.+++
T Consensus 6 EE~E~~l~~~r-~Kl~~~~~~~~~W~erG~G~l~i~~~k~~~ 46 (122)
T PF00638_consen 6 EEDEEILFEVR-AKLYRFDKEDKEWKERGVGTLKILKHKETG 46 (122)
T ss_dssp SSSEEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEETTSC
T ss_pred ccCcEEEEEEE-EEEEEEeCCCCCccccceeEEEEEEccCCc
Confidence 34688999988 999988765 7788999999999887664
Done!