Query 010497
Match_columns 509
No_of_seqs 147 out of 169
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 08:04:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010497.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010497hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2oqb_A Histone-arginine methyl 61.5 62 0.0021 28.6 9.9 95 139-252 8-108 (117)
2 1xke_A RAN-binding protein 2; 27.4 3E+02 0.01 23.8 9.4 41 131-172 3-45 (130)
3 3n7c_A ABR034WP; nuclear pore 17.1 5.1E+02 0.017 22.5 8.3 38 131-169 6-45 (130)
4 2crf_A RAN binding protein 3; 16.2 5.7E+02 0.02 22.7 12.5 108 130-250 21-137 (150)
5 3lvl_A NIFU-like protein; prot 13.5 80 0.0027 27.6 2.0 66 428-508 64-129 (129)
6 3or1_C Sulfite reductase GAMA; 11.7 1.1E+02 0.0037 26.3 2.2 39 286-333 13-51 (105)
7 1sau_A Sulfite reductase, desu 10.8 1.2E+02 0.0043 26.5 2.3 24 286-313 13-36 (115)
8 1slq_A VP4; beta sandwich, gre 8.1 5.2E+02 0.018 25.5 5.7 74 154-232 82-166 (278)
9 1yx3_A Hypothetical protein DS 8.0 1.5E+02 0.0053 26.6 1.8 24 286-313 34-57 (132)
10 3kz5_E Protein SOPB; partition 7.3 2.6E+02 0.0088 21.5 2.4 24 227-250 22-48 (52)
No 1
>2oqb_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase, transcriptional regulati activation domain; 1.69A {Rattus norvegicus}
Probab=61.48 E-value=62 Score=28.60 Aligned_cols=95 Identities=15% Similarity=0.153 Sum_probs=62.8
Q ss_pred EEecCeEEEEecCC--ccccccc-cceEEEEEecCCcceEEEEE---ecCccccccCCCCCeeeecCceeEEeccCCCCC
Q 010497 139 VKIPGAIVHLIERE--QSVELAS-GELYIVSLSQGDNVVAVFAR---VGDEIQWPLAKDEPAVKLDDSHYFFTLRVPENG 212 (509)
Q Consensus 139 l~IPGvql~lId~~--~Sv~la~-G~L~Ivr~~q~~~~~a~flq---VGD~~qwPL~kD~PVlKld~g~Y~Fsl~~P~~~ 212 (509)
-.++||+|.-|.++ +..+=|. ..+++.-=-+.+-....+.. +|= +.||+.+++-..++....|+|++ +
T Consensus 8 ~~f~gv~v~~I~d~~~~~~~ky~~q~v~L~~~ydpqg~sv~i~~~~~~~l-~ef~V~~~TEc~rVGk~S~litl---g-- 81 (117)
T 2oqb_A 8 SVFPGARLLTIGDANGEIQRHAEQQALRLEVRAGPDAAGIALYSHEDVCV-FKCSVSRETECSRVGRQSFIITL---G-- 81 (117)
T ss_dssp EEEEEEEEEEEECTTSSCEEEEEEEEEEEEEEECSSEEEEEEECTTCCEE-EEEEEETTSEEEEETTTEEEEEE---T--
T ss_pred eecCceEEEEEeCCCCcEeecccCceEEEEEEECCCCcEEEEEcCCCeEE-EEEEecCCccceeecCeEEEEEE---C--
Confidence 35679999999887 4555555 66655433333211111211 222 68999999999999999999965 2
Q ss_pred CCcccccCCcceeEEEEeeCCcchHHHHHHHHHHhhcCcc
Q 010497 213 SLETDQVHHEVLNYGLTIATKGQKHLLKELDKVLETYSCF 252 (509)
Q Consensus 213 ~~~~d~~~~~~lsYGVtlss~~~~~~l~~Ld~iL~q~S~F 252 (509)
..+.=+.|+ .+++...|.++|+.+..-
T Consensus 82 ----------~~slLl~Fa---s~~d~~~F~~~l~k~~~~ 108 (117)
T 2oqb_A 82 ----------CNSVLIQFA---TPHDFCSFYNILKTCRGH 108 (117)
T ss_dssp ----------TEEEEEECS---SHHHHHHHHHHHHHHTTC
T ss_pred ----------CcEEEEEeC---CHHHHHHHHHHHHHHhcC
Confidence 234445565 478889999999888654
No 2
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=27.39 E-value=3e+02 Score=23.80 Aligned_cols=41 Identities=22% Similarity=0.179 Sum_probs=31.5
Q ss_pred CCCCcceEEEecCeEEEEecCC--ccccccccceEEEEEecCCc
Q 010497 131 APPSEHVLVKIPGAIVHLIERE--QSVELASGELYIVSLSQGDN 172 (509)
Q Consensus 131 ~~~~eE~Ll~IPGvql~lId~~--~Sv~la~G~L~Ivr~~q~~~ 172 (509)
-+-+|++|+.+. |.||..+.+ +=.+-.-|+|+|.+-..++.
T Consensus 3 GEE~E~~l~~~r-aKL~~~~~~~~~WkERG~G~lkil~~k~~~k 45 (130)
T 1xke_A 3 GEEDEKVLYSQR-VKLFRFDAEVSQWKERGLGNLKILKNEVNGK 45 (130)
T ss_dssp SSSCEEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEETTSSC
T ss_pred CCcceEEEEEEE-EEEEEEcCCCCCcccCcEEEEEEEEcCCCCe
Confidence 355788999887 788888763 67789999999988765543
No 3
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=17.12 E-value=5.1e+02 Score=22.54 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=26.7
Q ss_pred CCCCcceEEEecCeEEEEecCC--ccccccccceEEEEEec
Q 010497 131 APPSEHVLVKIPGAIVHLIERE--QSVELASGELYIVSLSQ 169 (509)
Q Consensus 131 ~~~~eE~Ll~IPGvql~lId~~--~Sv~la~G~L~Ivr~~q 169 (509)
-+-+|++|+... |.||..+++ .=.+-.-|+|+|.+-..
T Consensus 6 GEE~E~~lf~~r-aKL~~f~~~~~~WkerG~G~lkil~~k~ 45 (130)
T 3n7c_A 6 GEENEEVLFCEK-AKLLIFDSDTKGYTSRGVGELKLLRKKD 45 (130)
T ss_dssp ----CEEEEEEE-EEEEEECC---CEEEEEEEEEEEEEETT
T ss_pred CCcCeeEEEEEE-EEEEEEeCCCCCchhcceEEEEEEEecC
Confidence 355688999988 799988765 56688899999977653
No 4
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=16.23 E-value=5.7e+02 Score=22.71 Aligned_cols=108 Identities=11% Similarity=0.102 Sum_probs=61.7
Q ss_pred CCCCCcceEEEecCeEEEEecCC--ccccccccceEEEEEec--CC-cceEEEEEecCcc----ccccCCCCCeeeecCc
Q 010497 130 NAPPSEHVLVKIPGAIVHLIERE--QSVELASGELYIVSLSQ--GD-NVVAVFARVGDEI----QWPLAKDEPAVKLDDS 200 (509)
Q Consensus 130 ~~~~~eE~Ll~IPGvql~lId~~--~Sv~la~G~L~Ivr~~q--~~-~~~a~flqVGD~~----qwPL~kD~PVlKld~g 200 (509)
..+-+|++|+.+. |.||..|.+ +=.+-.-|+|+|.+-.. ++ ....+++|--..+ --+|.++.++-+.+..
T Consensus 21 tGEE~E~~l~~~r-aKL~~fd~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~k 99 (150)
T 2crf_A 21 TGEEAESNVLQMQ-CKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEK 99 (150)
T ss_dssp CCCCCCEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEECSSSCSEEEEEEEEESSSCCEEEEEECCTTCCEECCSSS
T ss_pred CCCcCeEEEEEEE-eEEEEEcCCCCCcccceeEEEEEEeccccCCCCccEEEEEEEcCcceEEeeeeccCCceeecCCCC
Confidence 4455788999987 899988764 67789999999998763 22 2234444431101 1233333333334455
Q ss_pred eeEEeccCCCCCCCcccccCCcceeEEEEeeCCcchHHHHHHHHHHhhcC
Q 010497 201 HYFFTLRVPENGSLETDQVHHEVLNYGLTIATKGQKHLLKELDKVLETYS 250 (509)
Q Consensus 201 ~Y~Fsl~~P~~~~~~~d~~~~~~lsYGVtlss~~~~~~l~~Ld~iL~q~S 250 (509)
..+|+-.-+++ +.+-.|.|-|... +.-++|..+.++.-
T Consensus 100 ~~~~~~~d~~d---------~~~~~~lirfk~~---e~a~lf~~~~e~i~ 137 (150)
T 2crf_A 100 SIHITAMDTED---------QGVKVFLISASSK---DTGQLYAALHHRIL 137 (150)
T ss_dssp EEEEEEEBSSS---------CCEEEEEEECCHH---HHHHHHHHHHHHHH
T ss_pred EEEEEeecCCC---------CceEEEEEEECCH---HHHHHHHHHHHHHH
Confidence 56774422221 1345788888653 33356666665553
No 5
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=13.46 E-value=80 Score=27.62 Aligned_cols=66 Identities=23% Similarity=0.273 Sum_probs=39.8
Q ss_pred HHHhhcccchhhhhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHhhhhcCCCcccccchHHHHHHHHHHHHHhhhhcc
Q 010497 428 RNVMSTTSVVTTGLVSDRYGEQAAKATNEGLDAAGHAFGTAWAVFKIRQAFNPKSAFKPTSLAKAAVKANAAELKAKQSK 507 (509)
Q Consensus 428 K~ll~StS~aTt~vV~HKYGeeAGeaT~dal~aAGhv~~TAwnv~kIrka~npKs~lKpts~aK~aaka~~~~~k~~~~~ 507 (509)
..+..+++...++.|.-|==+||-+++++.+ ...++ + |..=+|=..|+-.|.++++.+|+.|+.+
T Consensus 64 Cais~ASaS~~te~i~Gkt~~ea~~i~~~~i------------~~~L~--l-~p~r~~Ca~La~~Al~~Al~~y~~k~~~ 128 (129)
T 3lvl_A 64 CGSAIASSSLVTEWVKGKSLDEAQAIKNTDI------------AEELE--L-PPVKIHCSILAEDAIKAAIADYKSKREA 128 (129)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHTCCHHHH------------HHHHT--C-CGGGGHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred CHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH------------HHHcC--C-CccchhHHHHHHHHHHHHHHHHHHhccC
Confidence 3444444555566666665566666665432 11222 3 3333566678999999999999998765
Q ss_pred C
Q 010497 508 K 508 (509)
Q Consensus 508 ~ 508 (509)
|
T Consensus 129 ~ 129 (129)
T 3lvl_A 129 K 129 (129)
T ss_dssp -
T ss_pred C
Confidence 4
No 6
>3or1_C Sulfite reductase GAMA; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} SCOP: d.203.1.1 PDB: 3or2_C* 2v4j_C* 2xsj_C*
Probab=11.73 E-value=1.1e+02 Score=26.32 Aligned_cols=39 Identities=8% Similarity=0.075 Sum_probs=25.7
Q ss_pred cCccccccccCCCcccchHHHHHHHHhhhhhhhhheeechhhhhhhhh
Q 010497 286 KSSGAYWTALAPNVEDYSGSVARMIAAGSGQLIKGILWCGDVTVDGLK 333 (509)
Q Consensus 286 ~~~~~~W~~~AP~VedyS~kvAk~Ia~Gs~~IsrGIv~~se~~~~~Iq 333 (509)
.+..+|.. +.+|||+.+|+.||. ..||...+|.==+-|+
T Consensus 13 ~D~~GfL~----~~~dW~ee~A~~lA~-----~egI~eLTe~HW~vI~ 51 (105)
T 3or1_C 13 VDEDGFLN----AFDDWCPEWVKYAKG-----SEGIGAGSADHQKIID 51 (105)
T ss_dssp BCTTSCBS----CGGGCCHHHHHHHGG-----GGTCSSCCHHHHHHHH
T ss_pred eCCCCCcC----ChHhCCHHHHHHHHH-----HCCCccCCHHHHHHHH
Confidence 44556666 679999999999998 4666333444333343
No 7
>1sau_A Sulfite reductase, desulfoviridin-type subunit GA; orthogonal helical bundle, oxidoreductase; 1.12A {Archaeoglobus fulgidus} PDB: 2a5w_A
Probab=10.80 E-value=1.2e+02 Score=26.49 Aligned_cols=24 Identities=17% Similarity=0.334 Sum_probs=19.0
Q ss_pred cCccccccccCCCcccchHHHHHHHHhh
Q 010497 286 KSSGAYWTALAPNVEDYSGSVARMIAAG 313 (509)
Q Consensus 286 ~~~~~~W~~~AP~VedyS~kvAk~Ia~G 313 (509)
.+..+|.. +.+|||+.+|+.||.-
T Consensus 13 ~D~~GfL~----d~~dW~eevA~~lA~~ 36 (115)
T 1sau_A 13 LDEDGFLQ----DWEEWDEEVAEALAKD 36 (115)
T ss_dssp BCTTSCBS----SGGGCCHHHHHHHHTC
T ss_pred ECCCcCcC----ChHhCCHHHHHHHHhc
Confidence 34456666 7899999999999885
No 8
>1slq_A VP4; beta sandwich, greek KEY, alpha helical triple coiled-coil, membrane penetration protein, non-enveloped virus, spike protein; 3.20A {Rhesus rotavirus} SCOP: f.47.1.1
Probab=8.11 E-value=5.2e+02 Score=25.48 Aligned_cols=74 Identities=19% Similarity=0.148 Sum_probs=44.8
Q ss_pred cccccccceEEEEEecCCcceEEEEEecCcc--------ccccCCCCCeeeecCceeEEeccCCCCCCCcccccC--Ccc
Q 010497 154 SVELASGELYIVSLSQGDNVVAVFARVGDEI--------QWPLAKDEPAVKLDDSHYFFTLRVPENGSLETDQVH--HEV 223 (509)
Q Consensus 154 Sv~la~G~L~Ivr~~q~~~~~a~flqVGD~~--------qwPL~kD~PVlKld~g~Y~Fsl~~P~~~~~~~d~~~--~~~ 223 (509)
+.-.-|.+|.|-|+.--....-+.+--.||= .-.|..+---+.|..|.|-|.||+=.-+ .|. ...
T Consensus 82 nggsLpTdf~i~r~evikens~vYiDYwDDSqaFrNMVYVRsl~A~ln~v~c~gg~y~f~lPvG~~p-----~m~gg~v~ 156 (278)
T 1slq_A 82 NGGSLPTDFVISRYEVIKENSYVYVDYWDDSQAFRNMVYVRSLAANLNSVICTGGDYSFALPVGQWP-----VMTGGAVS 156 (278)
T ss_dssp ECCSSTTSCEEEEEEEECTTCEEEEEEEESSTTTTTCCCEEEEEEEECEEEEECCEEECCCSSSCCC-----EEECCEEE
T ss_pred cCCCCCCCcccceEEEEecccEEEEEeccchHhhhheeEEeeehhhcCcEEEcCccEEEEeecCCCc-----cccCceEE
Confidence 3445678888888763333333455444432 2345555555778999999999885432 122 234
Q ss_pred eeE-EEEeeC
Q 010497 224 LNY-GLTIAT 232 (509)
Q Consensus 224 lsY-GVtlss 232 (509)
|+| ||+|+-
T Consensus 157 l~~~gvtLSt 166 (278)
T 1slq_A 157 LHSAGVTLST 166 (278)
T ss_dssp EEEEEEEEEE
T ss_pred EEEcceEEEe
Confidence 666 999974
No 9
>1yx3_A Hypothetical protein DSRC; structural genomics, dissimilatory sulfite reductase, gamma subunit, DSVC, PSI, protein structure initiative; NMR {Allochromatium vinosum}
Probab=7.97 E-value=1.5e+02 Score=26.55 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=19.0
Q ss_pred cCccccccccCCCcccchHHHHHHHHhh
Q 010497 286 KSSGAYWTALAPNVEDYSGSVARMIAAG 313 (509)
Q Consensus 286 ~~~~~~W~~~AP~VedyS~kvAk~Ia~G 313 (509)
.+..+|.. +.+|||+.+|+.||.-
T Consensus 34 ~D~eGfL~----d~~dWseevA~~lA~~ 57 (132)
T 1yx3_A 34 VDEEGYLS----NLNDWVPGVADVMAKQ 57 (132)
T ss_dssp EETTTEEC----CTTCCCHHHHHHHHHT
T ss_pred ECCCcCcC----ChHhCCHHHHHHHHHH
Confidence 33456666 7899999999999985
No 10
>3kz5_E Protein SOPB; partition, segregation, F plasmid, DNA-binding protein, DNA- DNA binding protein; 1.58A {Escherichia coli}
Probab=7.29 E-value=2.6e+02 Score=21.45 Aligned_cols=24 Identities=4% Similarity=0.315 Sum_probs=19.6
Q ss_pred EEEee---CCcchHHHHHHHHHHhhcC
Q 010497 227 GLTIA---TKGQKHLLKELDKVLETYS 250 (509)
Q Consensus 227 GVtls---s~~~~~~l~~Ld~iL~q~S 250 (509)
-|+|. +..|+++++..|.||++|-
T Consensus 22 ~Vsf~Ld~~~iP~~~IeKIE~lL~e~~ 48 (52)
T 3kz5_E 22 KMVLNLDRSRVPTECIEKIEAILKELE 48 (52)
T ss_dssp EEEEEEETTTSCHHHHHHHHHHHHHHC
T ss_pred eEEEEeccccCCHHHHHHHHHHHHHHh
Confidence 45555 4699999999999999884
Done!