Query 010497
Match_columns 509
No_of_seqs 147 out of 169
Neff 4.4
Searched_HMMs 13730
Date Mon Mar 25 08:04:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010497.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010497hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2crfa1 b.55.1.3 (A:8-144) Ran 66.6 28 0.002 28.6 11.1 104 131-247 15-127 (137)
2 d1v8ca2 d.129.5.1 (A:88-165) M 13.4 75 0.0055 23.7 3.5 31 135-168 27-57 (78)
3 d2v4jc1 d.203.1.1 (C:3-105) Ds 11.8 53 0.0038 26.2 2.3 25 285-313 10-34 (103)
4 d1t98a1 a.4.5.65 (A:8-118) Chr 10.7 17 0.0012 29.7 -1.2 34 413-446 46-79 (111)
5 d1rrpb_ b.55.1.3 (B:) Nuclear 9.5 3.9E+02 0.028 20.8 11.7 106 130-249 16-131 (134)
6 d1ji8a_ d.203.1.1 (A:) DsrC, t 9.1 58 0.0042 26.2 1.6 47 287-341 19-65 (111)
7 d1xoya_ b.18.1.26 (A:) Hypothe 8.9 1E+02 0.0074 26.1 3.2 36 132-167 55-93 (161)
8 d1mkea1 b.55.1.4 (A:31-144) Ac 8.2 4.3E+02 0.031 20.3 8.4 36 144-182 18-54 (114)
9 d2uubs1 d.28.1.1 (S:2-81) Ribo 8.1 52 0.0038 25.2 0.8 13 437-449 61-73 (80)
10 d1re5a_ a.127.1.1 (A:) 3-carbo 7.8 5.5E+02 0.04 23.7 8.6 91 409-502 332-444 (448)
No 1
>d2crfa1 b.55.1.3 (A:8-144) Ran binding protein 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=66.62 E-value=28 Score=28.56 Aligned_cols=104 Identities=13% Similarity=0.135 Sum_probs=62.5
Q ss_pred CCCCcceEEEecCeEEEEecCC--ccccccccceEEEEEecCCcc---eEEEEEecCc----cccccCCCCCeeeecCce
Q 010497 131 APPSEHVLVKIPGAIVHLIERE--QSVELASGELYIVSLSQGDNV---VAVFARVGDE----IQWPLAKDEPAVKLDDSH 201 (509)
Q Consensus 131 ~~~~eE~Ll~IPGvql~lId~~--~Sv~la~G~L~Ivr~~q~~~~---~a~flqVGD~----~qwPL~kD~PVlKld~g~ 201 (509)
.+-+|+.|+... |.||..|++ .-.+..-|.|+|.+....+.. ...++|-..- +--+|.++.++-+.+...
T Consensus 15 GEE~E~~l~~~r-~KL~~fd~~~~~WkerG~G~lkl~~~k~~~~~t~k~RlvmR~~~~~kv~lN~~i~~~m~~~~~~~k~ 93 (137)
T d2crfa1 15 GEEAESNVLQMQ-CKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQIDKASEKS 93 (137)
T ss_dssp CCCCCEEEEEEE-EEEEEEETTTTEEEEEEEEEEEEEEEECSSSCSEEEEEEEEESSSCCEEEEEECCTTCCEECCSSSE
T ss_pred CccCcEEEEEEE-EEEEEEeCCCCcCcccCEEEEEEEEEeccCCCCceEEEEEEECCCCeEEEeCEECCCCccccCCCCE
Confidence 344678999997 899998754 778899999999887654432 2344443210 123445555555566667
Q ss_pred eEEeccCCCCCCCcccccCCcceeEEEEeeCCcchHHHHHHHHHHh
Q 010497 202 YFFTLRVPENGSLETDQVHHEVLNYGLTIATKGQKHLLKELDKVLE 247 (509)
Q Consensus 202 Y~Fsl~~P~~~~~~~d~~~~~~lsYGVtlss~~~~~~l~~Ld~iL~ 247 (509)
..|+-..+++ ..+-.|-+.|.++ +.-++|+.|-+
T Consensus 94 v~~~~~d~~~---------~~~~~~li~~~~~---~~~~l~~~i~e 127 (137)
T d2crfa1 94 IHITAMDTED---------QGVKVFLISASSK---DTGQLYAALHH 127 (137)
T ss_dssp EEEEEEBSSS---------CCEEEEEEECCHH---HHHHHHHHHHH
T ss_pred EEEEeecCCC---------CceEEEEEEECCH---HHHHHHHHHHH
Confidence 7886533332 2345678888643 33344544443
No 2
>d1v8ca2 d.129.5.1 (A:88-165) MoaD-related protein, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=13.39 E-value=75 Score=23.73 Aligned_cols=31 Identities=32% Similarity=0.471 Sum_probs=25.8
Q ss_pred cceEEEecCeEEEEecCCccccccccceEEEEEe
Q 010497 135 EHVLVKIPGAIVHLIEREQSVELASGELYIVSLS 168 (509)
Q Consensus 135 eE~Ll~IPGvql~lId~~~Sv~la~G~L~Ivr~~ 168 (509)
+|-++++||+.+-|-+ ..||.-|.|+|-|++
T Consensus 27 ~egv~rlpga~vrf~e---~~pl~vgsl~ip~lr 57 (78)
T d1v8ca2 27 GEGVYRLPGAVVRFRE---VEPLKVGSLSIPQLR 57 (78)
T ss_dssp ETTEEEETTEEEEEEE---EEEEEETTEEEEEEE
T ss_pred cceEEecCCeEEEecc---cCCceecceecceEE
Confidence 5778999999998854 568889999998875
No 3
>d2v4jc1 d.203.1.1 (C:3-105) DsrC, the gamma subunit of dissimilatory sulfite reductase {Desulfovibrio vulgaris [TaxId: 881]}
Probab=11.84 E-value=53 Score=26.17 Aligned_cols=25 Identities=4% Similarity=0.179 Sum_probs=19.8
Q ss_pred ccCccccccccCCCcccchHHHHHHHHhh
Q 010497 285 GKSSGAYWTALAPNVEDYSGSVARMIAAG 313 (509)
Q Consensus 285 e~~~~~~W~~~AP~VedyS~kvAk~Ia~G 313 (509)
|.+..+|.. +.+|||+.+|+.||.-
T Consensus 10 e~D~~GyL~----~~~dW~e~vA~~lA~~ 34 (103)
T d2v4jc1 10 EVDEDGFLL----RFDDWCPEWVEYVKES 34 (103)
T ss_dssp CBCTTSCBS----CGGGCCHHHHHHHGGG
T ss_pred eECCCcccC----CcccCCHHHHHHHHHH
Confidence 344556776 8899999999999884
No 4
>d1t98a1 a.4.5.65 (A:8-118) Chromosome partition protein MukF (KicB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=10.66 E-value=17 Score=29.71 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=31.4
Q ss_pred hhhHHHHHHHHHHHHHHHhhcccchhhhhhhhcc
Q 010497 413 LDGFNKVCDAVEVAGRNVMSTTSVVTTGLVSDRY 446 (509)
Q Consensus 413 L~aFstV~DalE~AgK~ll~StS~aTt~vV~HKY 446 (509)
+|+|.-|+++.|+++.++..-..++.-++|+.|.
T Consensus 46 iD~F~~Vs~~feq~~et~~~RANnAINdlv~QRl 79 (111)
T d1t98a1 46 VDAFRHVSDAFEQTSETIGVRANNAINDMVRQRL 79 (111)
T ss_dssp HHHHHHHHHHTTCCSTTHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhhcccchhHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999998875
No 5
>d1rrpb_ b.55.1.3 (B:) Nuclear pore complex protein Nup358 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.52 E-value=3.9e+02 Score=20.80 Aligned_cols=106 Identities=12% Similarity=0.094 Sum_probs=58.6
Q ss_pred CCCCCcceEEEecCeEEEEecCC--ccccccccceEEEEEecCCcceEEEEEec-------CccccccCCCCCeeeecCc
Q 010497 130 NAPPSEHVLVKIPGAIVHLIERE--QSVELASGELYIVSLSQGDNVVAVFARVG-------DEIQWPLAKDEPAVKLDDS 200 (509)
Q Consensus 130 ~~~~~eE~Ll~IPGvql~lId~~--~Sv~la~G~L~Ivr~~q~~~~~a~flqVG-------D~~qwPL~kD~PVlKld~g 200 (509)
+.+-+|+.|+... |.||..+++ .=.+..-|.|+|.+=...+.. ..++|-. +-+.||-++=.+.-. +..
T Consensus 16 tgEE~E~~if~~r-~KL~~~~~~~~~WkerGvG~lkil~~~~t~~~-RlvmR~d~~~kv~lN~~i~~~~~~~~~~~-~~~ 92 (134)
T d1rrpb_ 16 TGEEDEEEFFCNR-AKLFRFDVESKEWKERGIGNVKILRHKTSGKI-RLLMRREQVLKICANHYISPDMKLTPNAG-SDR 92 (134)
T ss_dssp CSCCSEEEEEEEE-EEEEEECSSSSCEEEEEEEEEEEEEESSSCCC-EEEEECTTTCCEEECCBCCSSCCCBCSTT-CTT
T ss_pred cCccCcEEEEEEe-eEEEEEcCCCCceeeeeEEEEEEEEcCCCCcE-EEEEEEcCCCcEEEEEEECCCcEEeecCC-Cce
Confidence 3445578888886 888887654 667789999999887655432 3344421 113443332222211 233
Q ss_pred eeEEecc-CCCCCCCcccccCCcceeEEEEeeCCcchHHHHHHHHHHhhc
Q 010497 201 HYFFTLR-VPENGSLETDQVHHEVLNYGLTIATKGQKHLLKELDKVLETY 249 (509)
Q Consensus 201 ~Y~Fsl~-~P~~~~~~~d~~~~~~lsYGVtlss~~~~~~l~~Ld~iL~q~ 249 (509)
.++|+-. ..+ ....+-.|.|-|.+ +++-++|...+++.
T Consensus 93 ~~~~~~~d~~~--------~~~k~~~~~lrfk~---~e~a~~f~~~~~ea 131 (134)
T d1rrpb_ 93 SFVWHALDYAD--------ELPKPEQLAIRFKT---PEEAALFKCKFEEA 131 (134)
T ss_dssp EEEEEEEECTT--------SSCEEEEEEEECSS---HHHHHHHHHHHHHT
T ss_pred EEEEEeeccCC--------CCCcEEEEEEEECC---HHHHHHHHHHHHHh
Confidence 4555321 111 12346778888853 45566666666543
No 6
>d1ji8a_ d.203.1.1 (A:) DsrC, the gamma subunit of dissimilatory sulfite reductase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=9.14 E-value=58 Score=26.25 Aligned_cols=47 Identities=19% Similarity=0.245 Sum_probs=29.7
Q ss_pred CccccccccCCCcccchHHHHHHHHhhhhhhhhheeechhhhhhhhhcccccccc
Q 010497 287 SSGAYWTALAPNVEDYSGSVARMIAAGSGQLIKGILWCGDVTVDGLKWGNGFLRK 341 (509)
Q Consensus 287 ~~~~~W~~~AP~VedyS~kvAk~Ia~Gs~~IsrGIv~~se~~~~~IqkGa~~lr~ 341 (509)
+..+|.. +.+|||+.+|+.||+-. .||..-.|.-=+-|+-=-+++.+
T Consensus 19 D~~GfL~----~~~dW~e~vA~~lA~~~----eGi~~Lt~~Hw~vI~~lR~~y~~ 65 (111)
T d1ji8a_ 19 DEDCFMQ----NPEDWDEKVAEWLAREL----EGIQKMTEEHWKLVKYLREYWET 65 (111)
T ss_dssp EGGGEEC----CGGGCCHHHHHHHHHHH----TCCSSCCHHHHHHHHHHHHHTTT
T ss_pred CCCCccC----ChhhcCHHHHHHHHHcc----cCccccCHHHHHHHHHHHHHHHH
Confidence 3455666 78999999999999642 36654455444444433355554
No 7
>d1xoya_ b.18.1.26 (A:) Hypothetical protein AT3g04780/F7O18_27 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=8.86 E-value=1e+02 Score=26.07 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=23.1
Q ss_pred CCCcceEEEec---CeEEEEecCCccccccccceEEEEE
Q 010497 132 PPSEHVLVKIP---GAIVHLIEREQSVELASGELYIVSL 167 (509)
Q Consensus 132 ~~~eE~Ll~IP---Gvql~lId~~~Sv~la~G~L~Ivr~ 167 (509)
..|+|+||.|| -|.||-|-=-..-..+|..++|+.=
T Consensus 55 D~D~QLii~IpF~~~Vkl~si~i~~~~~~~Pk~iklf~N 93 (161)
T d1xoya_ 55 DADEQLLIYIPFNQVIKLHSFAIKGPEEEGPKTVKFFSN 93 (161)
T ss_dssp SSCSSEEEEEEEEEEECEEEEEEECCTTTSEEEEEEEES
T ss_pred CCChheEEEeecCCceEEEEEEEeCCCCCCCcEEEEEeC
Confidence 57899999999 4777755322222345766666653
No 8
>d1mkea1 b.55.1.4 (A:31-144) Actin regulatory protein WASP {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.22 E-value=4.3e+02 Score=20.29 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=24.0
Q ss_pred eEEEEecCC-ccccccccceEEEEEecCCcceEEEEEecC
Q 010497 144 AIVHLIERE-QSVELASGELYIVSLSQGDNVVAVFARVGD 182 (509)
Q Consensus 144 vql~lId~~-~Sv~la~G~L~Ivr~~q~~~~~a~flqVGD 182 (509)
|+||..+++ .-.....|.+.+++-.... ..+++|=|
T Consensus 18 v~lY~~~~~~~W~~~~tG~v~~v~d~~~~---~~~l~v~d 54 (114)
T d1mkea1 18 VQLYAADRNCMWSKKCSGVACLVKDNPQR---SYFLRIFD 54 (114)
T ss_dssp EEEEEEETTTEEEEEEEEEEEEEEETTTT---EEEEEEEC
T ss_pred EEEEEECCCCeEEECCceEEEEEEECCCC---eEEEEEEE
Confidence 888988877 4466778887776653332 34666655
No 9
>d2uubs1 d.28.1.1 (S:2-81) Ribosomal protein S19 {Thermus thermophilus [TaxId: 274]}
Probab=8.07 E-value=52 Score=25.17 Aligned_cols=13 Identities=31% Similarity=0.596 Sum_probs=8.9
Q ss_pred hhhhhhhhccchh
Q 010497 437 VTTGLVSDRYGEQ 449 (509)
Q Consensus 437 aTt~vV~HKYGee 449 (509)
.+-++|+||+||=
T Consensus 61 It~eMVGhklGEF 73 (80)
T d2uubs1 61 ITENMVGHKLGEF 73 (80)
T ss_dssp CCGGGTTSBSGGG
T ss_pred eccCcccceeecc
Confidence 3457788888774
No 10
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Probab=7.78 E-value=5.5e+02 Score=23.73 Aligned_cols=91 Identities=15% Similarity=0.220 Sum_probs=50.2
Q ss_pred HhhhhhhHHHHHHHH----HHHHHHHhhcccch----hhhhhhhccc-hhH----HHHHHHHHhhhhhHHHHH-------
Q 010497 409 VLATLDGFNKVCDAV----EVAGRNVMSTTSVV----TTGLVSDRYG-EQA----AKATNEGLDAAGHAFGTA------- 468 (509)
Q Consensus 409 ~~aSL~aFstV~Dal----E~AgK~ll~StS~a----Tt~vV~HKYG-eeA----GeaT~dal~aAGhv~~TA------- 468 (509)
+.+.+..+..+.+++ |...+++-.+-... ...++..++| ++| ++++..+...-.+.....
T Consensus 332 ~~~~~~~~~~~l~~l~vn~~~m~~~l~~s~~~~~ae~~~~~L~~~ig~~~Ah~iv~~~~~~a~~~~~~l~~~~~~~~~~~ 411 (448)
T d1re5a_ 332 VSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSIVLAQRLGRDRAHHLLEQCCQRAVAEQRHLRAVLGDEPQVS 411 (448)
T ss_dssp HHHHHHHHHHHHHHCEECHHHHHHHHTTSTTGGGHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHTCHHHH
T ss_pred HHHHHHhhhcccccCcccHHHHHHHHHhccCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHhCCCHHHHHHhhHhhh
Confidence 335566677777777 44555554333222 2233445678 334 444444444322222211
Q ss_pred --HHHHHhhhhcCCCcccccchHHHHHHHHHHHHHh
Q 010497 469 --WAVFKIRQAFNPKSAFKPTSLAKAAVKANAAELK 502 (509)
Q Consensus 469 --wnv~kIrka~npKs~lKpts~aK~aaka~~~~~k 502 (509)
..-..|+++++|...+++ |+.-...++++++
T Consensus 412 ~~l~~~~l~~~ldP~~~iG~---a~~~v~r~l~~~~ 444 (448)
T d1re5a_ 412 AELSGEELDRLLDPAHYLGQ---ARVWVARAVSEHQ 444 (448)
T ss_dssp HHSCHHHHHHHTCGGGCCTT---HHHHHHHHHHHHH
T ss_pred CCCCHHHHHHhCCHHHhCCc---HHHHHHHHHHHHH
Confidence 123577888999999975 5766666666665
Done!