Query 010498
Match_columns 509
No_of_seqs 323 out of 937
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 08:05:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010498.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010498hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vfk_A AKAP18 delta; APO, hydr 100.0 4.2E-31 1.4E-35 251.8 15.7 203 280-505 1-204 (205)
2 1vgj_A Hypothetical protein PH 100.0 2.8E-28 9.7E-33 227.9 15.7 180 284-502 3-182 (184)
3 1iuh_A 2'-5' RNA ligase; riken 99.9 6.5E-25 2.2E-29 209.1 15.5 174 284-505 3-182 (198)
4 2d4g_A Hypothetical protein BS 99.8 5.4E-21 1.8E-25 176.7 12.5 166 284-504 3-169 (171)
5 1jh6_A Cyclic phosphodiesteras 99.8 4E-18 1.4E-22 161.4 14.7 170 284-504 10-181 (189)
6 2cte_A Vigilin; K homology typ 99.5 5.4E-14 1.8E-18 119.2 7.7 73 146-219 14-87 (94)
7 2dgr_A Ring finger and KH doma 99.4 1.6E-13 5.5E-18 113.9 8.2 71 145-216 6-76 (83)
8 2ctl_A Vigilin; K homology typ 99.4 7.2E-13 2.5E-17 113.0 9.0 72 147-219 15-90 (97)
9 1vig_A Vigilin; RNA-binding pr 99.4 5.6E-13 1.9E-17 107.2 6.6 67 147-214 3-70 (71)
10 2ctj_A Vigilin; K homology typ 99.3 1.1E-12 3.7E-17 111.6 7.2 71 147-218 15-87 (95)
11 2ctm_A Vigilin; K homology typ 99.3 1.9E-12 6.5E-17 110.0 8.6 73 146-219 14-88 (95)
12 2ctk_A Vigilin; K homology typ 99.3 1.9E-12 6.3E-17 111.8 7.5 70 148-218 16-86 (104)
13 2ctf_A Vigilin; K homology typ 99.3 5.6E-12 1.9E-16 108.5 7.9 68 149-219 27-95 (102)
14 1zzk_A Heterogeneous nuclear r 99.2 1.9E-11 6.5E-16 100.8 8.1 72 146-218 4-78 (82)
15 2opv_A KHSRP protein; KH domai 99.2 1.8E-11 6.1E-16 101.6 7.1 67 148-215 13-84 (85)
16 1wvn_A Poly(RC)-binding protei 99.2 1.9E-11 6.4E-16 100.7 6.0 72 145-217 2-76 (82)
17 1x4n_A FAR upstream element bi 99.2 2.9E-11 9.9E-16 101.9 7.3 72 147-219 13-87 (92)
18 1dtj_A RNA-binding neurooncolo 99.2 1.8E-11 6.2E-16 99.1 5.6 67 148-215 2-74 (76)
19 1x4m_A FAR upstream element bi 99.2 2.4E-11 8.2E-16 102.8 6.2 70 146-216 12-86 (94)
20 2axy_A Poly(RC)-binding protei 99.2 2.7E-11 9.1E-16 97.8 6.0 69 147-216 3-72 (73)
21 1j5k_A Heterogeneous nuclear r 99.2 2.8E-11 9.6E-16 101.3 6.0 72 145-217 10-84 (89)
22 2jzx_A Poly(RC)-binding protei 99.2 4.8E-11 1.6E-15 109.4 7.6 106 147-253 3-117 (160)
23 2p2r_A Poly(RC)-binding protei 99.1 3.3E-11 1.1E-15 97.8 5.6 69 147-216 3-74 (76)
24 1ec6_A RNA-binding protein NOV 99.1 4.4E-11 1.5E-15 99.6 6.2 70 148-218 2-77 (87)
25 3krm_A Insulin-like growth fac 99.1 1.5E-10 5.1E-15 106.5 9.5 105 148-253 2-113 (163)
26 1we8_A Tudor and KH domain con 99.1 7.7E-11 2.6E-15 101.5 6.7 69 147-216 13-86 (104)
27 2hh3_A KH-type splicing regula 99.1 1.2E-10 4.3E-15 100.7 7.5 71 148-219 10-83 (106)
28 2anr_A Neuro-oncological ventr 99.1 8.2E-11 2.8E-15 109.8 6.7 108 145-253 2-132 (178)
29 1j4w_A FUSE binding protein; s 99.1 1.5E-10 5E-15 107.8 8.2 105 148-253 2-132 (174)
30 3n89_A Defective in GERM LINE 99.1 1.2E-10 4.1E-15 120.9 7.0 66 146-212 27-102 (376)
31 2jvz_A KH type-splicing, FAR u 99.1 1.8E-10 6.1E-15 105.7 6.7 104 149-253 2-119 (164)
32 2hh2_A KH-type splicing regula 99.0 1.4E-10 4.9E-15 100.4 5.4 66 150-216 8-79 (107)
33 1k1g_A SF1-BO isoform; splicin 99.0 2.5E-10 8.4E-15 102.5 6.7 71 146-216 4-99 (131)
34 3krm_A Insulin-like growth fac 98.9 2.7E-09 9.2E-14 98.0 8.4 72 147-219 83-159 (163)
35 2yqr_A KIAA0907 protein; struc 98.9 2.2E-09 7.7E-14 94.7 7.4 70 149-218 12-101 (119)
36 2cpq_A FragIle X mental retard 98.8 1.5E-09 5.1E-14 91.4 4.2 67 145-213 11-78 (91)
37 2jvz_A KH type-splicing, FAR u 98.8 2.1E-09 7.2E-14 98.5 5.3 68 149-217 91-161 (164)
38 2jzx_A Poly(RC)-binding protei 98.8 5.9E-09 2E-13 95.4 6.4 69 147-216 87-159 (160)
39 2anr_A Neuro-oncological ventr 98.7 9.6E-09 3.3E-13 95.7 5.4 68 148-216 103-175 (178)
40 1j4w_A FUSE binding protein; s 98.7 1.1E-08 3.9E-13 95.0 5.1 65 148-213 103-173 (174)
41 3n89_A Defective in GERM LINE 98.7 1.5E-08 5E-13 105.3 6.3 69 143-212 180-257 (376)
42 2bl5_A MGC83862 protein, quaki 98.6 5.1E-08 1.8E-12 88.2 5.7 65 150-214 3-99 (140)
43 2qnd_A FMR1 protein; KH domain 98.5 5E-08 1.7E-12 88.6 5.1 65 151-216 69-142 (144)
44 2e3u_A PH-DIM2P, hypothetical 98.4 3.2E-07 1.1E-11 89.0 6.6 63 150-214 35-101 (219)
45 3u1k_A Polyribonucleotide nucl 98.2 6.4E-07 2.2E-11 99.0 4.1 64 148-214 566-629 (630)
46 2qnd_A FMR1 protein; KH domain 98.1 1.2E-06 4.2E-11 79.4 4.3 94 147-253 2-95 (144)
47 2e3u_A PH-DIM2P, hypothetical 97.9 1.2E-05 4.1E-10 77.9 6.4 53 159-216 139-191 (219)
48 1tua_A Hypothetical protein AP 97.7 3.6E-05 1.2E-09 73.0 6.7 64 150-215 5-72 (191)
49 1tua_A Hypothetical protein AP 97.6 3.8E-05 1.3E-09 72.9 4.0 54 158-216 107-160 (191)
50 4aid_A Polyribonucleotide nucl 97.5 1.9E-05 6.6E-10 88.3 0.9 65 149-216 570-634 (726)
51 2fsq_A ATU0111 protein; alpha- 97.0 0.0019 6.6E-08 63.3 8.8 182 283-502 43-240 (243)
52 3v69_A Protein filia; RNA-bind 97.0 0.0013 4.5E-08 58.8 6.7 68 151-219 58-127 (140)
53 3cdi_A Polynucleotide phosphor 95.3 0.0029 9.8E-08 71.0 0.0 65 149-216 560-624 (723)
54 1e3p_A Guanosine pentaphosphat 95.0 0.0013 4.4E-08 74.2 -3.9 62 150-214 599-660 (757)
55 2z0s_A Probable exosome comple 81.1 3.1 0.00011 40.1 7.1 63 151-216 150-212 (235)
56 2ba0_A Archeal exosome RNA bin 75.0 3.5 0.00012 39.7 5.4 61 151-215 138-198 (229)
57 2ja9_A Exosome complex exonucl 71.9 3.5 0.00012 38.1 4.4 59 151-212 93-152 (175)
58 2cxc_A NUSA; transcription ter 69.4 2.6 9.1E-05 37.8 2.9 37 149-185 36-72 (144)
59 2ctf_A Vigilin; K homology typ 64.9 0.077 2.6E-06 45.0 -7.8 51 195-253 5-55 (102)
60 2cxc_A NUSA; transcription ter 63.9 1.4 4.9E-05 39.6 -0.0 38 148-185 102-139 (144)
61 2nn6_G Exosome complex exonucl 57.6 3.9 0.00013 40.9 1.8 59 151-212 212-270 (289)
62 2je6_I RRP4, exosome complex R 53.7 2 6.8E-05 42.0 -1.0 60 151-213 157-216 (251)
63 2asb_A Transcription elongatio 51.2 9 0.00031 37.4 3.2 39 149-187 184-222 (251)
64 1hh2_P NUSA, N utilization sub 44.5 12 0.00041 38.2 3.0 39 148-186 302-340 (344)
65 1k0r_A NUSA; two component arr 44.5 12 0.00042 38.4 3.1 40 148-187 306-345 (366)
66 2pt7_G HP1451, hypothetical pr 43.5 11 0.00039 34.0 2.4 30 150-179 34-63 (152)
67 3i24_A HIT family hydrolase; s 40.8 41 0.0014 29.9 5.7 83 343-425 46-139 (149)
68 2fsq_A ATU0111 protein; alpha- 39.7 23 0.00079 34.3 4.1 62 292-368 149-211 (243)
69 1j26_A Immature colon carcinom 34.8 19 0.00065 30.9 2.3 55 165-219 31-108 (112)
70 1jh6_A Cyclic phosphodiesteras 33.8 48 0.0016 30.0 5.1 41 389-440 5-45 (189)
71 1wh9_A 40S ribosomal protein S 32.0 18 0.00061 29.8 1.6 30 150-179 36-65 (92)
72 2o5a_A BH1328 protein; BHR21, 31.2 1.1E+02 0.0039 26.4 6.8 63 349-426 4-66 (125)
73 2ctj_A Vigilin; K homology typ 31.2 2.6 9E-05 35.0 -3.6 30 225-254 17-46 (95)
74 1tac_A TAT protein; transcript 29.5 24 0.00081 28.8 1.9 26 31-61 28-53 (86)
75 3ohe_A Histidine triad (HIT) p 28.5 1.2E+02 0.0042 26.1 6.6 81 342-422 45-136 (137)
76 2id1_A Hypothetical protein; a 27.6 1.5E+02 0.0051 25.9 6.9 62 350-426 5-66 (130)
77 3iev_A GTP-binding protein ERA 25.5 37 0.0013 33.2 3.0 37 148-184 239-284 (308)
78 3udc_A Small-conductance mecha 25.2 2.9E+02 0.01 26.6 9.4 71 352-426 194-267 (285)
79 4dh9_Y YAEJ; ribosome, YAEJ, r 24.6 96 0.0033 27.5 5.1 56 164-221 23-102 (140)
80 2jva_A Peptidyl-tRNA hydrolase 22.4 91 0.0031 26.4 4.4 31 190-220 67-101 (108)
81 1wf3_A GTP-binding protein; GT 21.6 25 0.00085 34.5 0.8 26 150-175 231-257 (301)
82 3i4s_A Histidine triad protein 21.0 1.6E+02 0.0056 25.9 6.1 77 344-420 52-139 (149)
83 3ups_A Iojap-like protein; PSI 20.9 1.6E+02 0.0054 25.9 5.8 63 349-426 20-82 (136)
No 1
>2vfk_A AKAP18 delta; APO, hydrolase; HET: AMP; 1.50A {Homo sapiens} PDB: 2vfl_A* 2vfy_A
Probab=99.97 E-value=4.2e-31 Score=251.78 Aligned_cols=203 Identities=21% Similarity=0.379 Sum_probs=163.1
Q ss_pred ccCCceEEEEccCCcchhHHHHhhccCcccccccccCCCCCCCCCCCCcccccCCCCceEEeeccccCCHHHHHHHHHHH
Q 010498 280 VDQEHKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVL 359 (509)
Q Consensus 280 ~rp~~FVAv~l~~~~~~~~v~~~q~~i~~~~~~~~~~r~~~~~~~Gld~~~fv~p~~LHLTL~fLgl~dee~v~~a~~aL 359 (509)
+++++||||.++++++.+.|..+|+.+.- .++|++ ..|++++++||||.|||++++++++++.++|
T Consensus 1 ~~~r~Fial~~~~~~~~~~l~~~~~~l~~-------------~~~~~~-~~~v~~~~~HiTL~flg~~~~~~~~~l~~~l 66 (205)
T 2vfk_A 1 YQPNYFLSIPITNKKITAGIKVLQNSILR-------------QDNRLT-KAMVGDGSFHITLLVMQLLNEDEVNIGTDAL 66 (205)
T ss_dssp CCCCEEEEEECCCHHHHHHHHHHHHHHHH-------------HCGGGG-GGBCCTTCCEEEEEEECCCSHHHHHHHHHHH
T ss_pred CCCCEEEEEEcCCHHHHHHHHHHHHHHHh-------------cCcchH-HHhCCcCccEEEEEEEEcCCHHHHHHHHHHH
Confidence 46899999999987899999999998730 011222 3799999999999999999999999999999
Q ss_pred HHhHHhhhhhcCCCCeEEEEceeccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCccccCCCCCceeeEE
Q 010498 360 KSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHAT 439 (509)
Q Consensus 360 ~~i~~~i~~~L~~~pf~L~l~GLg~F~~dp~~pRVLyagV~~~~~~~~L~~L~~~L~~~f~~~Gl~~e~~~~r~fkPHiT 439 (509)
.++...+.+++..+||.|+|.|+|+|++ +|||+++.+.++.+.|.+|++.|.+.|..+|+... +.++|+||||
T Consensus 67 ~~~~~~~~~~~~~~pf~l~l~g~~~F~~-----~vl~~~v~~~~~~~~L~~L~~~l~~~~~~~g~~~~--~~~~f~PHiT 139 (205)
T 2vfk_A 67 LELKPFVEEILEGKHLTLPFHGIGTFQG-----QVGFVKLADGDHVSALLEIAETAKRTFQEKGILAG--ESRTFKPHLT 139 (205)
T ss_dssp HHHHHHHHHHTTTSCCEEEEEEEEEETT-----TEEEEEECCSHHHHHHHHHHHHHHHHHHTTTCCBC--CSSCCCCCEE
T ss_pred HHHHHHHHHHhCCCCcEEEEechhhCCC-----cEEEEeecccccHHHHHHHHHHHHHHHHHcCCCcC--CCCCcceEEE
Confidence 9987666666767999999999999987 79999998532347899999999999999999542 2689999999
Q ss_pred eeeecccccccCCCccccccHHHHHHHhCCCccccEEecEEEEEeee-cCCCCCceeEEEEEeCCCC
Q 010498 440 LMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRF-VYDESGFYHCCASIPFPEN 505 (509)
Q Consensus 440 LaR~k~~~~~~~~~~~~~fda~~il~~~~d~~fG~~~V~eI~Ls~l~-~~~~~g~Y~~i~si~L~~~ 505 (509)
|||.++...... .....++ .++++.+.++.||.|.|++|+|+++. ..+.+|+|+++++++|++.
T Consensus 140 lar~~~~~~~~~-~~~~~~~-~~~l~~~~~~~~~~~~v~~i~L~~~~~~~~~~g~Y~~~~~~~L~~~ 204 (205)
T 2vfk_A 140 FMKLSKAPMLWK-KGVRKIE-PGLYEQFIDHRFGEEILYQIDLCSMLKKKQSNGYYHCESSIVIGEK 204 (205)
T ss_dssp EEEGGGCHHHHH-TTCSSCC-GGGGGGGTTCEEEEEECCEEEEEESSSCCCTTSCCCEEEEEECSSC
T ss_pred EEecccchhhhh-ccccccC-HHHHHHhcCCcCcEEEeCEEEEEEcCCCCCCCCcEEEEEEEecCCC
Confidence 999865310000 0011233 36788899999999999999998865 4456899999999999865
No 2
>1vgj_A Hypothetical protein PH0099; alpha+beta, LIGT-like, structural genomics, ligase; 1.94A {Pyrococcus horikoshii} PDB: 1vdx_A 2fyh_A
Probab=99.95 E-value=2.8e-28 Score=227.93 Aligned_cols=180 Identities=17% Similarity=0.322 Sum_probs=151.9
Q ss_pred ceEEEEccCCcchhHHHHhhccCcccccccccCCCCCCCCCCCCcccccCCCCceEEeeccccCCHHHHHHHHHHHHHhH
Q 010498 284 HKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSIS 363 (509)
Q Consensus 284 ~FVAv~l~~~~~~~~v~~~q~~i~~~~~~~~~~r~~~~~~~Gld~~~fv~p~~LHLTL~fLgl~dee~v~~a~~aL~~i~ 363 (509)
+||||.++. ++.+.+..+|+.+. ..+. ...|++|++|||||.|+|++++++++++.++|+++.
T Consensus 3 ~Fial~~p~-~~~~~l~~~~~~l~---------------~~~~-~~~~v~~~~lHiTL~flg~~~~~~~~~l~~~l~~~~ 65 (184)
T 1vgj_A 3 AFIAIDVNE-SVRDSLVRAQDYIG---------------SKEA-KIKFVERENLHITLKFLGEITEEQAEEIKNILKKIA 65 (184)
T ss_dssp EEEEEECCH-HHHHHHHHHHHHHC---------------SSSE-EEEECCGGGCEEEEEEEESCCHHHHHHHHHHHHHHH
T ss_pred EEEEEcCCH-HHHHHHHHHHHHHh---------------hcCC-CcEecCccccEEEEEeecCCCHHHHHHHHHHHHHHH
Confidence 799999986 78999999998873 1111 237999999999999999999999999999998873
Q ss_pred HhhhhhcCCCCeEEEEceeccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCccccCCCCCceeeEEeeee
Q 010498 364 SKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNI 443 (509)
Q Consensus 364 ~~i~~~L~~~pf~L~l~GLg~F~~dp~~pRVLyagV~~~~~~~~L~~L~~~L~~~f~~~Gl~~e~~~~r~fkPHiTLaR~ 443 (509)
. ..+||.|+|.|+|+|++ +++|+|||+++.+ + +.|.+|++.|.+.+...|+..+ . +|+|||||+|.
T Consensus 66 ~------~~~pf~l~l~g~g~F~~-~~~p~vl~~~v~~--~-~~L~~L~~~l~~~l~~~g~~~~---~-~f~PHiTLar~ 131 (184)
T 1vgj_A 66 E------KYKKHEVKVKGIGVFPN-PNYIRVIWAGIEN--D-EIIREMAREIEDELAKLGFKKE---G-NFVAHITLGRV 131 (184)
T ss_dssp T------TSBCEEEEEEEEEEEEC-SSSEEEEEEEEET--C-HHHHHHHHHHHHHHHTTTCCCC---C-CCCCEEEEEEE
T ss_pred c------cCCCeEEEEeeEeeCCC-CCCCcEEEEEecC--C-HHHHHHHHHHHHHHHHcCCCCC---C-CccceEEEEee
Confidence 2 25899999999999997 8899999999985 2 7899999999999999999885 5 99999999997
Q ss_pred cccccccCCCccccccHHHHHHHhCCCccccEEecEEEEEeeecCCCCCceeEEEEEeC
Q 010498 444 RHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDESGFYHCCASIPF 502 (509)
Q Consensus 444 k~~~~~~~~~~~~~fda~~il~~~~d~~fG~~~V~eI~Ls~l~~~~~~g~Y~~i~si~L 502 (509)
+.... .-++.++++.+.++++|.|.|++|+|+++...+.|+.|+++++++|
T Consensus 132 ~~~~~--------~~~~~~~~~~~~~~~~~~~~v~~~~L~~s~~~~~g~~y~~l~~~~L 182 (184)
T 1vgj_A 132 KFVKD--------KLGLTMKLKELANEDFGSFVVDAIELKKSTLTPKGPIYETLARFEL 182 (184)
T ss_dssp EEESC--------HHHHHHHHHHTTTCEEEEEEECEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred cccCc--------HHHHHHHHHHhcCCCCCcEEEeEEEEEEeeecCCCCceeEEEEEeC
Confidence 54221 0134578888889999999999999977665455799999999999
No 3
>1iuh_A 2'-5' RNA ligase; riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.50A {Thermus thermophilus} SCOP: d.61.1.2
Probab=99.92 E-value=6.5e-25 Score=209.09 Aligned_cols=174 Identities=16% Similarity=0.168 Sum_probs=141.3
Q ss_pred ceEEEEccCCcchhHHHHhhccCcccccccccCCCCCCCCCCCCcccccCCCCceEEeeccccCCHHHHHHHHHHHHHhH
Q 010498 284 HKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSIS 363 (509)
Q Consensus 284 ~FVAv~l~~~~~~~~v~~~q~~i~~~~~~~~~~r~~~~~~~Gld~~~fv~p~~LHLTL~fLgl~dee~v~~a~~aL~~i~ 363 (509)
+||||.++. ++.+.|..+|+.+. . +. ...|++++++||||.|+|++++++++++.++|.++.
T Consensus 3 lFial~~p~-~~~~~l~~~~~~l~---------------~-~~-~~r~v~~~~~HiTL~flgev~~~~~~~l~~~l~~~~ 64 (198)
T 1iuh_A 3 LFYAVFLPE-EVRAALVEAQTKVR---------------P-FR-GWKPVPPHQLHLTLLFLGERPEEELPDYLALGHRLA 64 (198)
T ss_dssp EEEEEECCH-HHHHHHHHHHGGGT---------------T-CT-TEEECCGGGCEEEEEEEEECCGGGHHHHHHHHHHHH
T ss_pred EEEEEeCCH-HHHHHHHHHHHHhh---------------h-hc-CCcccCCCCCEEEEEeCCcCCHHHHHHHHHHHHHHh
Confidence 799999986 78999999998773 1 11 136999999999999999999999999999998874
Q ss_pred HhhhhhcCCCCeEEEEceeccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHC-C-----CccccCCCCCceee
Q 010498 364 SKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEA-G-----LVFHRDYNKKLKLH 437 (509)
Q Consensus 364 ~~i~~~L~~~pf~L~l~GLg~F~~dp~~pRVLyagV~~~~~~~~L~~L~~~L~~~f~~~-G-----l~~e~~~~r~fkPH 437 (509)
. ..+||.|+|.|+|+|++ ..+|||||+++ + ...|.+|++.|.+.+... | +..+ .++|+||
T Consensus 65 ~------~~~pf~l~l~g~g~F~~-~~~p~vl~l~v-~---~~~L~~L~~~l~~~l~~~~g~~~~~~~~~---~~~f~PH 130 (198)
T 1iuh_A 65 R------LEAPFRARLRGTGYFPN-EGTPRVWFAKA-E---AEGFLRLAEGLRAGVEELLGEEAVRIPGW---DKPFKPH 130 (198)
T ss_dssp H------HSCCEEEEEEEEEEESS-SSSCSEEEEEE-E---CHHHHHHHHHHHHHHHHHHGGGGGGSTTT---TSCCCCE
T ss_pred c------cCCCeEEEEcceEECCC-CCCCCEEEEEC-C---CHHHHHHHHHHHHHHHHhcCCCcccccCC---CCCCCCc
Confidence 2 25899999999999997 77899999999 4 478999999999999999 9 8775 5799999
Q ss_pred EEeeeecccccccCCCccccccHHHHHHHhCCCccccEEecEEEEEeeecCCCCCceeEEEEEeCCCC
Q 010498 438 ATLMNIRHKKRRKGTRRVDYFDARDIFKQFGSKEWGEYLIKEAHLSQRFVYDESGFYHCCASIPFPEN 505 (509)
Q Consensus 438 iTLaR~k~~~~~~~~~~~~~fda~~il~~~~d~~fG~~~V~eI~Ls~l~~~~~~g~Y~~i~si~L~~~ 505 (509)
|||+|.+.... . +. . ... .| .|.|++|+|.++.....|+.|+++++++|.+.
T Consensus 131 iTLar~~~~~~------~--l~--~---~l~--~~-~~~v~~~~L~~S~l~~~G~~y~~l~~~~L~~~ 182 (198)
T 1iuh_A 131 ITLARRKAPAP------R--VP--P---VLF--GL-EWPVEGFALVRSELKPKGPVYTVLEKFSLRGE 182 (198)
T ss_dssp EEEEEESSCCC------C--CC--C---CCC--CE-EEEECEEEEEEEEECSSSEEEEEEEEEECCCC
T ss_pred EEeEeccCcch------h--HH--H---hhc--Cc-eEEecEEEEEEEEeCCCCCeeeEEEEEECCCC
Confidence 99999754221 0 10 1 111 34 78999999976655455789999999999764
No 4
>2d4g_A Hypothetical protein BSU11850; beta barrel, alpha helix, structural genomics, unknown function; 2.30A {Bacillus subtilis}
Probab=99.84 E-value=5.4e-21 Score=176.65 Aligned_cols=166 Identities=14% Similarity=0.171 Sum_probs=130.2
Q ss_pred ceEEEEccCCcchhHHHHhhccCcccccccccCCCCCCCCCCCCcccccCCCCceEEeeccccCCHHHHHHHHHHHHHhH
Q 010498 284 HKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSIS 363 (509)
Q Consensus 284 ~FVAv~l~~~~~~~~v~~~q~~i~~~~~~~~~~r~~~~~~~Gld~~~fv~p~~LHLTL~fLgl~dee~v~~a~~aL~~i~ 363 (509)
+||||.++. ++.+.+..+|+.+. .+ ..|++| ||||.|+|++++++++++.++|+++.
T Consensus 3 ~Fiai~~~~-~~~~~l~~~~~~~~----------------~~---~~~v~p---HiTL~f~g~~~~~~~~~l~~~l~~~~ 59 (171)
T 2d4g_A 3 YGIVLFPSK-KLQDLANSYRKRYD----------------PS---YSLIPP---HLTLRASFECAEEKADQLVSHLRNIA 59 (171)
T ss_dssp EEEEBCCCH-HHHHHHHHHHHHHC----------------GG---GGTSCS---CBCCSSCEECCGGGHHHHHHHHHHHH
T ss_pred EEEEEeCCH-HHHHHHHHHHHHhC----------------cc---cCCCCC---eEEeecCCcCChHHHHHHHHHHHHHH
Confidence 799999986 78899999998762 01 258998 99999999999999999999998874
Q ss_pred HhhhhhcCCCCeEEEEceeccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCccccCCCCCceeeEEeeee
Q 010498 364 SKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNI 443 (509)
Q Consensus 364 ~~i~~~L~~~pf~L~l~GLg~F~~dp~~pRVLyagV~~~~~~~~L~~L~~~L~~~f~~~Gl~~e~~~~r~fkPHiTLaR~ 443 (509)
. ..+||.|+|.|+|+|+. . ..|||+++.+ .+.|.+|++.|.+.|... .+ .++|+|||||+|.
T Consensus 60 ~------~~~pf~l~l~~~g~F~~--~-~~vl~l~~~~---~~~L~~L~~~l~~~~~~~---~~---~~~f~PHiTLar~ 121 (171)
T 2d4g_A 60 K------ESHPLVLKMTKYSSFAP--V-NNVIYIKAEP---TEELKTLNEKLYTGVLAG---EQ---EYNFVPHVTVGQN 121 (171)
T ss_dssp H------TCCCEEEEEEEEEECTT--T-CCCEEEEECC---CHHHHHHHHHTTSGGGCS---CC---CSCCCCEEEEECS
T ss_pred c------cCCCEEEEECCcEEeCC--C-CcEEEEEccC---ChHHHHHHHHHHhccccc---cc---CCCCCCeEEeecC
Confidence 2 35899999999999973 1 1499999985 378999999998876541 22 5789999999984
Q ss_pred cccccccCCCccccccHHHHHHHhCCCcc-ccEEecEEEEEeeecCCCCCceeEEEEEeCCC
Q 010498 444 RHKKRRKGTRRVDYFDARDIFKQFGSKEW-GEYLIKEAHLSQRFVYDESGFYHCCASIPFPE 504 (509)
Q Consensus 444 k~~~~~~~~~~~~~fda~~il~~~~d~~f-G~~~V~eI~Ls~l~~~~~~g~Y~~i~si~L~~ 504 (509)
... -++..+++.+....+ +.+.|++|+|... +.|+.|+++++++|.+
T Consensus 122 ~~~-----------~~~~~~~~~~~~~~~~~~~~v~~i~L~~s---~~g~~y~~l~~~~L~~ 169 (171)
T 2d4g_A 122 LSD-----------DEHSDVLGQLKMQEVSHEEIVDRFHLLYQ---LENGSWTVYETFLLGR 169 (171)
T ss_dssp CCH-----------HHHHHHHHHHTTSCCCEEEEECEEEEEEE---CTTSCEEEEEEEECC-
T ss_pred CCH-----------HHHHHHHHHhcCCCCceeEEECeEEEEEE---CCCCcEEEEEEEecCC
Confidence 321 123466777654444 6899999999876 3578999999999964
No 5
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=99.77 E-value=4e-18 Score=161.40 Aligned_cols=170 Identities=9% Similarity=-0.006 Sum_probs=129.5
Q ss_pred ceEEEEccCCcchhHHHHhhccCcccccccccCCCCCCCCCCCCcccccCCCCceEEeeccccCCHHHHHHHHHHHHHhH
Q 010498 284 HKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWNKDRVNAATNVLKSIS 363 (509)
Q Consensus 284 ~FVAv~l~~~~~~~~v~~~q~~i~~~~~~~~~~r~~~~~~~Gld~~~fv~p~~LHLTL~fLgl~dee~v~~a~~aL~~i~ 363 (509)
.|+|+. .+++.+.|..+++.+. ...+.++.++|||| ||.++.+ ++.+.++|+++.
T Consensus 10 ~f~~~p--p~~~~~~l~~~~~~l~--------------------~~~~~~~~~~HiTL--lG~~~~~-~~~l~~~L~~~a 64 (189)
T 1jh6_A 10 SVWALP--DEESEPRFKKLMEALR--------------------SEFTGPRFVPHVTV--AVSAYLT-ADEAKKMFESAC 64 (189)
T ss_dssp EEEEEE--CTTTHHHHHHHHHHHH--------------------HHHTCCCCCCCEEE--EEEEEEC-HHHHHHHHHHHH
T ss_pred EEEEEC--CHHHHHHHHHHHHHHH--------------------HHcCCCCCCCEEEE--eCCCCCC-HHHHHHHHHHHH
Confidence 567776 5688999999998774 01245778999999 9999876 888888888874
Q ss_pred HhhhhhcCCCCeEEEEceeccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCccccCCCCCceeeEEeeee
Q 010498 364 SKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATLMNI 443 (509)
Q Consensus 364 ~~i~~~L~~~pf~L~l~GLg~F~~dp~~pRVLyagV~~~~~~~~L~~L~~~L~~~f~~~Gl~~e~~~~r~fkPHiTLaR~ 443 (509)
. ..+||.|+|.|+|+|+ ..|||||++|++ .+.|.+|++.+++. +|+.. .++|.|||||+|.
T Consensus 65 ~------~~~pf~l~l~g~g~~~---~~~rvlw~~v~~---~~~L~~L~~~v~~~---~g~~~----~~~f~PHlTLar~ 125 (189)
T 1jh6_A 65 D------GLKAYTATVDRVSTGT---FFFQCVFLLLQT---TPEVMEAGEHCKNH---FNCST----TTPYMPHLSLLYA 125 (189)
T ss_dssp H------TCBCEEEEEEEEEEEE---ETTEEEEEEECC---CHHHHHHHHHHHHH---TTCCC----CSCCCCEEEEECC
T ss_pred h------hCCCeEEEEcceeccC---ccceEEEEeecC---CHHHHHHHHHHHHH---hCCCC----CCCCCCeEEEEEe
Confidence 2 2589999999999953 367999999985 37899999999886 68875 3799999999986
Q ss_pred cccccccCCCccccccHHHHHHHh-CCCccccEEecEEEEEeeecC-CCCCceeEEEEEeCCC
Q 010498 444 RHKKRRKGTRRVDYFDARDIFKQF-GSKEWGEYLIKEAHLSQRFVY-DESGFYHCCASIPFPE 504 (509)
Q Consensus 444 k~~~~~~~~~~~~~fda~~il~~~-~d~~fG~~~V~eI~Ls~l~~~-~~~g~Y~~i~si~L~~ 504 (509)
+.... ..-++.+.++.+ .++.++.|.|++|.|.++... +.-.-|..+++++|+.
T Consensus 126 ~~~~~-------~~~~~~~~l~~~~~~~~~~~~~v~~~~L~~s~~~~~~~~~w~l~~~~~~~~ 181 (189)
T 1jh6_A 126 ELTEE-------EKKNAQEKAYTLDSSLDGLSFRLNRLALCKTDTEDKTLETWETVAVCNLNP 181 (189)
T ss_dssp CCCHH-------HHHHHHHHHHHHCTTCTTCEEEEEEEEEEECCTTCTTCTTCEEEEEEECBC
T ss_pred cCCHH-------HHHHHHHHHHhhccCCCCCcEEeeEEEEEEeCCCCCccCeEEEEEEEEcCC
Confidence 53211 011334556556 567889999999999776542 2347899999999964
No 6
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.48 E-value=5.4e-14 Score=119.22 Aligned_cols=73 Identities=26% Similarity=0.417 Sum_probs=67.5
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010498 146 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 219 (509)
Q Consensus 146 ~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-~~~I~I~G~s~~~v~~A~~~I~~i~~~~~~ 219 (509)
.++++..+.||+++||+|||+||.|+|+|+++|||+|+||+.++ ++.|+|+|. ++++++|+++|+.++.+..+
T Consensus 14 ~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~~~~~~V~I~G~-~e~v~~A~~~I~~i~~~~~~ 87 (94)
T 2cte_A 14 QTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPDDPSNQIKITGT-KEGIEKARHEVLLISAEQDK 87 (94)
T ss_dssp CSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTTSSCCEEEEEEC-HHHHHHHHHHHHHHHHHHHT
T ss_pred CCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCCCCCCeEEEEEC-HHHHHHHHHHHHHHhhcccc
Confidence 56889999999999999999999999999999999999998654 589999998 99999999999999998655
No 7
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.45 E-value=1.6e-13 Score=113.89 Aligned_cols=71 Identities=27% Similarity=0.436 Sum_probs=64.4
Q ss_pred CCCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 010498 145 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 216 (509)
Q Consensus 145 ~~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~i~~~ 216 (509)
..++.+..+.||.+++|+||||+|+|+|+|+++|||+|+||+.++...|+|+|. ++++++|++.|+.++..
T Consensus 6 ~~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~~~~~~v~ItG~-~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 6 SGGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGRDKEPVFAVTGM-PENVDRAREEIEAHITL 76 (83)
T ss_dssp SCCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCSSSCCEEEEEEC-TTTHHHHHHHHHHHHHS
T ss_pred CCCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCCCCCCeEEEEcC-HHHHHHHHHHHHHHHhc
Confidence 346788999999999999999999999999999999999998777778999996 69999999999997654
No 8
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.39 E-value=7.2e-13 Score=112.98 Aligned_cols=72 Identities=26% Similarity=0.377 Sum_probs=65.6
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC----CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010498 147 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK----EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 219 (509)
Q Consensus 147 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~----~~~I~I~G~s~~~v~~A~~~I~~i~~~~~~ 219 (509)
..++..+.||+++|+.||||||+++++|+++|||+|+||..+. .+.|+|+|. ++++.+|+++|+.|+.+...
T Consensus 15 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~~~~~~~~V~I~G~-~e~v~~A~~~I~~iv~e~e~ 90 (97)
T 2ctl_A 15 RSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDDGNQPQDQITITGY-EKNTEAARDAILRIVGELEQ 90 (97)
T ss_dssp TTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTTCSSCSSEEEEESC-HHHHHHHHHHHHHHHHHHHH
T ss_pred cceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHHHHh
Confidence 4689999999999999999999999999999999999998764 358999997 89999999999999988654
No 9
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.37 E-value=5.6e-13 Score=107.22 Aligned_cols=67 Identities=18% Similarity=0.401 Sum_probs=60.0
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHH
Q 010498 147 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAII 214 (509)
Q Consensus 147 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-~~~I~I~G~s~~~v~~A~~~I~~i~ 214 (509)
...+..+.||+++||.|||+||.++++|+++|||+|+||..++ ++.|+|+|+ .+++++|+++|+.|+
T Consensus 3 ~~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g~~~~~V~I~G~-~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 3 RMDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDSEKSNLIRIEGD-PQGVQQAKRELLELA 70 (71)
T ss_dssp CCEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCCSSSEEEEEEES-SHHHHHHHHHHHHTC
T ss_pred ceEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCCCcccEEEEEcC-HHHHHHHHHHHHHHh
Confidence 3467899999999999999999999999999999999998764 458999998 689999999998763
No 10
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.35 E-value=1.1e-12 Score=111.57 Aligned_cols=71 Identities=24% Similarity=0.396 Sum_probs=64.2
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHh-CcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHHhh
Q 010498 147 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEM-GVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAV 218 (509)
Q Consensus 147 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT-~~~I~iP~~~~-~~~I~I~G~s~~~v~~A~~~I~~i~~~~~ 218 (509)
...+.++.||+++|+.|||+||.++|+|+++| ||+|+||..++ ++.|+|.|++ .+|++|+++|+.|+.+..
T Consensus 15 ~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g~~~~~V~I~G~~-~~v~~A~~~I~~iv~e~e 87 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEGSGSDTVVIRGPS-SDVEKAKKQLLHLAEEKQ 87 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTTTTCCEEEEESCH-HHHHHHHHHHHHHHHHHS
T ss_pred hcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCCCCcceEEEEcCH-HHHHHHHHHHHHHHhhhh
Confidence 35567899999999999999999999999999 99999998775 5689999985 599999999999999854
No 11
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.35 E-value=1.9e-12 Score=109.99 Aligned_cols=73 Identities=23% Similarity=0.307 Sum_probs=65.9
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC--CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010498 146 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK--EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 219 (509)
Q Consensus 146 ~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~--~~~I~I~G~s~~~v~~A~~~I~~i~~~~~~ 219 (509)
..+.+..+.||+++||.|||+||.++|+|+++|||+|+||..++ .+.|+|+|. .++|++|++.|+.|+.+..+
T Consensus 14 ~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~~~~~~V~I~G~-~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 14 EQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGAPDPNCVTVTGL-PENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp TTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTCSCTTEEEEESC-HHHHHHHHHHHHHHHHHHHT
T ss_pred cccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCCCCCcEEEEEcC-HHHHHHHHHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999998764 347999997 69999999999999998665
No 12
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.33 E-value=1.9e-12 Score=111.83 Aligned_cols=70 Identities=26% Similarity=0.399 Sum_probs=64.0
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHHhh
Q 010498 148 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAV 218 (509)
Q Consensus 148 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-~~~I~I~G~s~~~v~~A~~~I~~i~~~~~ 218 (509)
.....+.||+++||.|||+||+++|+|+++|||+|+||..+. ++.|+|+|. .+++++|++.|+.++.+..
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g~~~~~V~I~G~-~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPELQSDIIAITGL-AANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTTTTCCEEEEEEC-HHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCCCCcceEEEEcC-HHHHHHHHHHHHHHHhhHH
Confidence 588899999999999999999999999999999999998765 468999997 5999999999999987744
No 13
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.28 E-value=5.6e-12 Score=108.51 Aligned_cols=68 Identities=31% Similarity=0.468 Sum_probs=63.2
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHH-hCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010498 149 HSLSVEVGASVIRFIKGKEGSTQKKFEKE-MGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVE 219 (509)
Q Consensus 149 ~~~~v~Vp~~~~~~IIGk~G~t~k~iE~e-T~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~i~~~~~~ 219 (509)
.+.++.||+.+|++|||++|+++|+|+++ ++++|+||+ .++.|+|+|+ ++.|++|+.+|+.++++...
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~--~~~~ItI~G~-~~~V~~a~~~I~~~v~el~~ 95 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE--GEDKITLEGP-TEDVSVAQEQIEGMVKDLIN 95 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS--SSCEEEEEEC-HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC--CCCEEEEECC-HHHHHHHHHHHHHHHHHHHh
Confidence 78899999999999999999999999997 699999998 4578999998 89999999999999998765
No 14
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.23 E-value=1.9e-11 Score=100.76 Aligned_cols=72 Identities=21% Similarity=0.274 Sum_probs=63.8
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHhh
Q 010498 146 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAV 218 (509)
Q Consensus 146 ~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~i~~~~~ 218 (509)
..+.+..+.||.++++.||||+|+++|+|+++|||+|+|+.... .+.|+|+|. +++|++|+..|+.++.+..
T Consensus 4 g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~~ 78 (82)
T 1zzk_A 4 GPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-QDQIQNAQYLLQNSVKQYS 78 (82)
T ss_dssp CCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEEC-HHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeC-HHHHHHHHHHHHHHHHhcc
Confidence 34788999999999999999999999999999999999987522 357999995 8999999999999998743
No 15
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.21 E-value=1.8e-11 Score=101.61 Aligned_cols=67 Identities=25% Similarity=0.374 Sum_probs=59.6
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHH
Q 010498 148 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIA 215 (509)
Q Consensus 148 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-----~~~I~I~G~s~~~v~~A~~~I~~i~~ 215 (509)
.....+.||.+++|.||||+|+|+|+|+++|||+|+|+..+. +..|.|+| +++++++|++.|+.++.
T Consensus 13 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~er~v~I~G-~~~~v~~A~~~I~~i~~ 84 (85)
T 2opv_A 13 GTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIG-DPYKVQQACEMVMDILR 84 (85)
T ss_dssp SEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSSTTSCEEEEEEE-CHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHhc
Confidence 457799999999999999999999999999999999997543 22499999 68999999999999875
No 16
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.19 E-value=1.9e-11 Score=100.75 Aligned_cols=72 Identities=17% Similarity=0.308 Sum_probs=62.7
Q ss_pred CCCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHh
Q 010498 145 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEA 217 (509)
Q Consensus 145 ~~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~i~~~~ 217 (509)
.+.+.+..+.||.+++|.||||+|+++++|+++|||+|+|+.... ++.|.|+|. .+++.+|+..|+.++.+.
T Consensus 2 ~g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 2 LGSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITGS-AASISLAQYLINARLSSE 76 (82)
T ss_dssp CTTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHTC--
T ss_pred CCCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHHhh
Confidence 456788999999999999999999999999999999999987422 457999996 699999999999998763
No 17
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.19 E-value=2.9e-11 Score=101.91 Aligned_cols=72 Identities=22% Similarity=0.391 Sum_probs=64.4
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010498 147 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 219 (509)
Q Consensus 147 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~i~~~~~~ 219 (509)
......+.||.++++.||||+|+++|+|+++|||+|+|+.... .+.|+|+|. .++|++|+..|+.++.+.+.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~-~e~v~~A~~~I~~~i~~~~~ 87 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGT-PESVQSAKRLLDQIVEKGRS 87 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHhccc
Confidence 4577899999999999999999999999999999999987533 357999997 89999999999999998654
No 18
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.18 E-value=1.8e-11 Score=99.11 Aligned_cols=67 Identities=18% Similarity=0.321 Sum_probs=59.5
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHHHH
Q 010498 148 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIA 215 (509)
Q Consensus 148 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~------~~~I~I~G~s~~~v~~A~~~I~~i~~ 215 (509)
+.+..+.||.+++|.||||+|+++|+|+++|||+|+|++.++ .+.|.|+|. .+++.+|+..|+.++.
T Consensus 2 ~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~ 74 (76)
T 1dtj_A 2 KELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVT 74 (76)
T ss_dssp CEEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCSTTCCEEEEEEEES-HHHHHHHHHHHHHHCC
T ss_pred ceEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999997532 357999997 8999999999998764
No 19
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.17 E-value=2.4e-11 Score=102.78 Aligned_cols=70 Identities=23% Similarity=0.378 Sum_probs=63.2
Q ss_pred CCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHHH
Q 010498 146 AERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAE 216 (509)
Q Consensus 146 ~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-----~~~I~I~G~s~~~v~~A~~~I~~i~~~ 216 (509)
..+....+.||.++++.||||+|+|+|+|+++|||+|+|+..+. ...|+|+| ++++|++|++.|+.++.+
T Consensus 12 p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~r~v~I~G-~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 12 PGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQNTGADKPLRITG-DPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp CCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCSSCSCEEEEEEE-CTTTHHHHHHHHHHHHCC
T ss_pred CCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHhc
Confidence 46789999999999999999999999999999999999987543 35699999 589999999999999876
No 20
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.17 E-value=2.7e-11 Score=97.83 Aligned_cols=69 Identities=25% Similarity=0.333 Sum_probs=61.8
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHH
Q 010498 147 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAE 216 (509)
Q Consensus 147 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-~~~I~I~G~s~~~v~~A~~~I~~i~~~ 216 (509)
.+....+.||.+.+|.||||||+++|+|+++|||+|+|+..+. ...|.|+|. .+++.+|...|..++.+
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~~~er~v~I~G~-~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSCCSEEEEEEEEC-HHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCCCCcEEEEEEeC-HHHHHHHHHHHHHHHhc
Confidence 4577899999999999999999999999999999999998644 356899997 89999999999988764
No 21
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.16 E-value=2.8e-11 Score=101.31 Aligned_cols=72 Identities=21% Similarity=0.281 Sum_probs=64.1
Q ss_pred CCCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHh
Q 010498 145 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEA 217 (509)
Q Consensus 145 ~~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~i~~~~ 217 (509)
...+.+..+.||.++++.||||+|+++|+|+++|||+|+|+.... ++.|+|+|. .++|++|+..|+.++.+.
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~v~I~G~-~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGT-QDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSCCSSSSEEEEEEEEE-HHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCCCCCCCccEEEEEcC-HHHHHHHHHHHHHHHHhh
Confidence 345788899999999999999999999999999999999987422 467999997 899999999999999874
No 22
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.15 E-value=4.8e-11 Score=109.44 Aligned_cols=106 Identities=21% Similarity=0.215 Sum_probs=89.6
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-CCcEEEEccChhHHHHHHHHHHHHHHHhhhC-----
Q 010498 147 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-EDSIIIEGNSTDSVAKASEKIQAIIAEAVES----- 220 (509)
Q Consensus 147 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-~~~I~I~G~s~~~v~~A~~~I~~i~~~~~~~----- 220 (509)
......+.||...+|.||||+|+++|+|+++|||+|+|+..+. .+.|+|+|. .++|.+|+..|..++.+....
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~i~e~~~~~~~~~ 81 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGNCPERIITLAGP-TNAIFKAFAMIIDKLEEDISSSMTNS 81 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCTTTEEEEEEEEE-HHHHHHHHHHHHHHHHHHHTSCCCSS
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCCCCceEEEEEeC-HHHHHHHHHHHHHHHHhhccccCCCC
Confidence 3567899999999999999999999999999999999998644 457899997 799999999999887663221
Q ss_pred ---CCCCceEEEEeccccchhhhccHHHHHHHHhcc
Q 010498 221 ---PSLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 253 (509)
Q Consensus 221 ---~k~~~tHFIsIPl~~hp~I~~~~~~f~~~Il~~ 253 (509)
+..+.+..+.||-..+..|+|+.+..++.|.+.
T Consensus 82 ~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~ 117 (160)
T 2jzx_A 82 TAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRES 117 (160)
T ss_dssp SCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred ccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHH
Confidence 122357788899998999999999999999876
No 23
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.15 E-value=3.3e-11 Score=97.80 Aligned_cols=69 Identities=17% Similarity=0.334 Sum_probs=61.3
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHH
Q 010498 147 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAE 216 (509)
Q Consensus 147 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~i~~~ 216 (509)
...+..+.||.+++|.||||+|+++++|+++|||+|+|+.... ++.|.|+|. ++++.+|+..|+.++.+
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~ 74 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGS-AASISLAQYLINVRLSS 74 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCCCTTCSEEEEEEEEC-HHHHHHHHHHHHHHHTT
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCCCCCCCeEEEEEEeC-HHHHHHHHHHHHHHHHc
Confidence 3577899999999999999999999999999999999987422 467999997 89999999999988754
No 24
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.14 E-value=4.4e-11 Score=99.61 Aligned_cols=70 Identities=17% Similarity=0.294 Sum_probs=61.9
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHHHHHhh
Q 010498 148 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIAEAV 218 (509)
Q Consensus 148 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~------~~~I~I~G~s~~~v~~A~~~I~~i~~~~~ 218 (509)
+.+..+.||.+.+|.||||+|+++++|+++|||+|+|+..++ .+.|.|+|. .+++.+|+..|..++.+..
T Consensus 2 k~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~g~~~r~v~I~G~-~~~v~~A~~~I~~~i~~~~ 77 (87)
T 1ec6_A 2 KELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTRNRRVTITGS-PAATQAAQYLISQRVTYEQ 77 (87)
T ss_dssp CSEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBSTTSCEEEEEEESS-HHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhccc
Confidence 346789999999999999999999999999999999997532 357999997 8999999999999987743
No 25
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.12 E-value=1.5e-10 Score=106.46 Aligned_cols=105 Identities=18% Similarity=0.268 Sum_probs=87.2
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC----CCcEEEEccChhHHHHHHHHHHHHHHHhhh-CC-
Q 010498 148 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK----EDSIIIEGNSTDSVAKASEKIQAIIAEAVE-SP- 221 (509)
Q Consensus 148 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~----~~~I~I~G~s~~~v~~A~~~I~~i~~~~~~-~~- 221 (509)
+-+..+.||.+.+|.||||+|+++|+|+++|||+|+|+..+. ...|+|+|. .+++.+|+..|..++.+... .|
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~-~e~v~~A~~~I~~~~~e~~~~~~~ 80 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGP-PEAQFKAQGRIYGKLKEENFFGPK 80 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEEC-HHHHHHHHHHHHHHHHHTTSSCSS
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHhcccccccc
Confidence 446789999999999999999999999999999999987532 345999994 89999999999999887421 11
Q ss_pred -CCCceEEEEeccccchhhhccHHHHHHHHhcc
Q 010498 222 -SLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 253 (509)
Q Consensus 222 -k~~~tHFIsIPl~~hp~I~~~~~~f~~~Il~~ 253 (509)
....+..+.||-..+..|+|+.+..++.|.+.
T Consensus 81 ~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~ 113 (163)
T 3krm_A 81 EEVKLETHIRVPASAAGRVIGKGGKTVNELQNL 113 (163)
T ss_dssp CCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHH
T ss_pred cCCceEEEEEcChhheeeEEcCCChHHHHHHHH
Confidence 12234567799999999999999999999876
No 26
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.11 E-value=7.7e-11 Score=101.48 Aligned_cols=69 Identities=25% Similarity=0.253 Sum_probs=61.2
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHHH
Q 010498 147 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAE 216 (509)
Q Consensus 147 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-----~~~I~I~G~s~~~v~~A~~~I~~i~~~ 216 (509)
......+.||.+++|.||||+|+|+|+|+++|||+|+|+.... ++.|+|+|. .+++++|++.|+.++.+
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~~~~~~V~I~G~-~~~v~~A~~~I~~~i~e 86 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGT-QKEVAAAKHLILEKVSE 86 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSCCSSSSEEEEEEEEE-HHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCCCCCCCcceEEEEcC-HHHHHHHHHHHHHHHhh
Confidence 3457789999999999999999999999999999999987542 467999997 56899999999999876
No 27
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.10 E-value=1.2e-10 Score=100.73 Aligned_cols=71 Identities=21% Similarity=0.332 Sum_probs=61.3
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010498 148 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 219 (509)
Q Consensus 148 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~i~~~~~~ 219 (509)
..+..+.||.++++.||||+|+|+|+|+++|+|+|+|+.... +..|+|+|. .+++++|++.|+.++.+...
T Consensus 10 ~~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~~~~~er~V~I~G~-~e~v~~A~~~I~~ii~~~~~ 83 (106)
T 2hh3_A 10 GGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP-PDRCEHAARIINDLLQSLRS 83 (106)
T ss_dssp --CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSCSSSSEEEEEEESS-HHHHHHHHHHHHHHHHHHC-
T ss_pred CeEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCCCCCceeEEEEEeC-HHHHHHHHHHHHHHHhcccc
Confidence 457899999999999999999999999999999999986443 236999997 89999999999999988544
No 28
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.10 E-value=8.2e-11 Score=109.81 Aligned_cols=108 Identities=22% Similarity=0.232 Sum_probs=89.2
Q ss_pred CCCCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHHHHHhh
Q 010498 145 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIAEAV 218 (509)
Q Consensus 145 ~~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~------~~~I~I~G~s~~~v~~A~~~I~~i~~~~~ 218 (509)
..++++..+.||..++|.||||+|+++|+|+++|||+|+|+..++ ...|+|+|. .++|.+|+..|..++.+..
T Consensus 2 l~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~-~~~v~~A~~~I~~~~~~~~ 80 (178)
T 2anr_A 2 LGSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGT-IEALNAVHGFIAEKIREMP 80 (178)
T ss_dssp -CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEEC-HHHHHHHHHHHHHHHTCCC
T ss_pred CCCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeC-HHHHHHHHHHHHHHHhccC
Confidence 356789999999999999999999999999999999999987542 246899996 7999999999998886531
Q ss_pred hC-----------------CCCCceEEEEeccccchhhhccHHHHHHHHhcc
Q 010498 219 ES-----------------PSLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 253 (509)
Q Consensus 219 ~~-----------------~k~~~tHFIsIPl~~hp~I~~~~~~f~~~Il~~ 253 (509)
.. +....+..+.||...+..|+|+.+..++.|.+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~ 132 (178)
T 2anr_A 81 QNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQ 132 (178)
T ss_dssp CC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHH
T ss_pred CccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHH
Confidence 10 001246778899998999999999999999876
No 29
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.09 E-value=1.5e-10 Score=107.80 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=86.8
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHhhhCC---
Q 010498 148 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEAVESP--- 221 (509)
Q Consensus 148 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~i~~~~~~~~--- 221 (509)
..+..+.||..++|.||||+|+++|+|+++|||+|+|++... ...|.|+|. .++|.+|+..|..++.+.....
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~~~~~~~~~~~~~ 80 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGP-PDRAQHAAEIITDLLRSVQAGNPGG 80 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEEC-HHHHHHHHHHHHHHHHHHC------
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeC-HHHHHHHHHHHHHHHHhcccCCCCC
Confidence 467899999999999999999999999999999999975322 346899997 8999999999999998753210
Q ss_pred --------------------CCCceEEEEeccccchhhhccHHHHHHHHhcc
Q 010498 222 --------------------SLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 253 (509)
Q Consensus 222 --------------------k~~~tHFIsIPl~~hp~I~~~~~~f~~~Il~~ 253 (509)
....+..+.||-..+..|+|+.+..++.|.+.
T Consensus 81 ~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~ 132 (174)
T 1j4w_A 81 PGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQ 132 (174)
T ss_dssp -----------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHH
T ss_pred CCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHH
Confidence 00136677899998999999999999999876
No 30
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.07 E-value=1.2e-10 Score=120.95 Aligned_cols=66 Identities=18% Similarity=0.275 Sum_probs=60.7
Q ss_pred CCCeEEEEeccccccccccCCCc--hhHHHHHHHhCcEEEcCCCC--------CCCcEEEEccChhHHHHHHHHHHH
Q 010498 146 AERHSLSVEVGASVIRFIKGKEG--STQKKFEKEMGVKIILPSSK--------KEDSIIIEGNSTDSVAKASEKIQA 212 (509)
Q Consensus 146 ~~~~~~~v~Vp~~~~~~IIGk~G--~t~k~iE~eT~~~I~iP~~~--------~~~~I~I~G~s~~~v~~A~~~I~~ 212 (509)
.++++.+++||+.+|++|||||| +++++|.+||||+|+||..+ .++.|+|+|. +++|++|+.+|+.
T Consensus 27 ~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~-~enVE~AR~~I~~ 102 (376)
T 3n89_A 27 PTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGY-FGDVDRARMLMRR 102 (376)
T ss_dssp TTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEE-HHHHHHHHHHHHH
T ss_pred CCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcC-HHHHHHHHHHHHh
Confidence 56899999999999999999999 99999999999999999876 1467999997 8999999999985
No 31
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.05 E-value=1.8e-10 Score=105.68 Aligned_cols=104 Identities=20% Similarity=0.249 Sum_probs=85.3
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHHHhhhCC--
Q 010498 149 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAEAVESP-- 221 (509)
Q Consensus 149 ~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-----~~~I~I~G~s~~~v~~A~~~I~~i~~~~~~~~-- 221 (509)
.+..+.||..++|.||||+|+++|+|+++|||+|+|+..+. ...|.|+|. .++|.+|+..|..++.+.....
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~-~~~v~~A~~~I~~ii~e~~~~~~~ 80 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGD-PYKVQQACEMVMDILRERDQGGFG 80 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEEC-HHHHHHHHHHHHHHTTCSSSCCCS
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHHhccCCCCC
Confidence 46789999999999999999999999999999999976432 347899994 7999999999999987643110
Q ss_pred -------CCCceEEEEeccccchhhhccHHHHHHHHhcc
Q 010498 222 -------SLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 253 (509)
Q Consensus 222 -------k~~~tHFIsIPl~~hp~I~~~~~~f~~~Il~~ 253 (509)
+...+..+.||...+..|+|+.+..++.|.++
T Consensus 81 ~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~ 119 (164)
T 2jvz_A 81 DRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQND 119 (164)
T ss_dssp SCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHH
T ss_pred CccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHH
Confidence 00123567799988999999999999999876
No 32
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.04 E-value=1.4e-10 Score=100.39 Aligned_cols=66 Identities=17% Similarity=0.294 Sum_probs=59.8
Q ss_pred EEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHHHHH
Q 010498 150 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAIIAE 216 (509)
Q Consensus 150 ~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~------~~~I~I~G~s~~~v~~A~~~I~~i~~~ 216 (509)
+..+.||.++++.||||+|+|+|+|+++|||+|+|+.... .+.|+|+| +.++|.+|+..|+.++.+
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~~~~~~~~~r~V~I~G-~~e~v~~A~~~I~~~i~e 79 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQLPPNGDPNFKLFIIRG-SPQQIDHAKQLIEEKIEG 79 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCCCTTCCTTEEEEEEES-CHHHHHHHHHHHHHHSCS
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCccCCCCCCCceEEEEEC-CHHHHHHHHHHHHHHHhc
Confidence 7799999999999999999999999999999999987632 26799999 689999999999988866
No 33
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.03 E-value=2.5e-10 Score=102.48 Aligned_cols=71 Identities=28% Similarity=0.417 Sum_probs=62.5
Q ss_pred CCCeEEEEecccc------ccccccCCCchhHHHHHHHhCcEEEcCCCC-------------------CCCcEEEEccCh
Q 010498 146 AERHSLSVEVGAS------VIRFIKGKEGSTQKKFEKEMGVKIILPSSK-------------------KEDSIIIEGNST 200 (509)
Q Consensus 146 ~~~~~~~v~Vp~~------~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~-------------------~~~~I~I~G~s~ 200 (509)
..+++..|.||.+ |+|.|||++|.|+|+||+||||+|.|...+ +...|.|+|.+.
T Consensus 4 ~~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~ 83 (131)
T 1k1g_A 4 ATRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTM 83 (131)
T ss_dssp -CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSH
T ss_pred CceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCH
Confidence 4578899999988 889999999999999999999999996533 145899999999
Q ss_pred hHHHHHHHHHHHHHHH
Q 010498 201 DSVAKASEKIQAIIAE 216 (509)
Q Consensus 201 ~~v~~A~~~I~~i~~~ 216 (509)
+.+++|++.|+.|+..
T Consensus 84 e~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 84 ENVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999865
No 34
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=98.90 E-value=2.7e-09 Score=98.02 Aligned_cols=72 Identities=22% Similarity=0.331 Sum_probs=63.6
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CC--cEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010498 147 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---ED--SIIIEGNSTDSVAKASEKIQAIIAEAVE 219 (509)
Q Consensus 147 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~--~I~I~G~s~~~v~~A~~~I~~i~~~~~~ 219 (509)
......+.||..++|.||||+|+++++|+++|||+|+||..+. .+ .|.|+| +.++|.+|+..|+.+++++.+
T Consensus 83 ~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~~~~~ 159 (163)
T 3krm_A 83 VKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRDQTPDENDQVIVKIIG-HFYASQMAQRKIRDILAQVKQ 159 (163)
T ss_dssp CCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTTCCCCTTSEEEEEEEE-CHHHHHHHHHHHHHHHHHHTC
T ss_pred CceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCCCCCCCCCceEEEEEe-CHHHHHHHHHHHHHHHHHHHH
Confidence 3567799999999999999999999999999999999987543 22 689999 589999999999999999765
No 35
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=2.2e-09 Score=94.68 Aligned_cols=70 Identities=19% Similarity=0.199 Sum_probs=59.4
Q ss_pred eEEEEecccc-------ccccccCCCchhHHHHHHHhCcEEEcCCCC-------------CCCcEEEEccChhHHHHHHH
Q 010498 149 HSLSVEVGAS-------VIRFIKGKEGSTQKKFEKEMGVKIILPSSK-------------KEDSIIIEGNSTDSVAKASE 208 (509)
Q Consensus 149 ~~~~v~Vp~~-------~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~-------------~~~~I~I~G~s~~~v~~A~~ 208 (509)
.+..|.||.+ ++|.|||++|.|+|+|++||||+|+|-..+ +...|.|++.+.+++++|++
T Consensus 12 ~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~~ 91 (119)
T 2yqr_A 12 VQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAKK 91 (119)
T ss_dssp EEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHHH
T ss_pred EEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHHH
Confidence 4567777754 899999999999999999999999996332 23689999999999999999
Q ss_pred HHHHHHHHhh
Q 010498 209 KIQAIIAEAV 218 (509)
Q Consensus 209 ~I~~i~~~~~ 218 (509)
.|+.|+.+..
T Consensus 92 ~Ie~Ll~~v~ 101 (119)
T 2yqr_A 92 LCENLLQTVH 101 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHhhchH
Confidence 9999987744
No 36
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.84 E-value=1.5e-09 Score=91.37 Aligned_cols=67 Identities=25% Similarity=0.287 Sum_probs=59.9
Q ss_pred CCCCeEEEEeccccccccccCCCchhHHHHHHHhCcE-EEcCCCCCCCcEEEEccChhHHHHHHHHHHHH
Q 010498 145 SAERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVK-IILPSSKKEDSIIIEGNSTDSVAKASEKIQAI 213 (509)
Q Consensus 145 ~~~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~-I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~i 213 (509)
....+...+.||++.+|.+||++|.++|+|.++||++ |+|.. +++.|.|.|.+.+++.+|++.|+.+
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e--ddG~V~I~g~~~ea~~~A~~~I~~i 78 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE--DTGTFRIYGESADAVKKARGFLEFV 78 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET--TTTEEEEEESSHHHHHHHHHHHSCC
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc--CCCEEEEEECCHHHHHHHHHHHHhh
Confidence 4567889999999999999999999999999999998 99953 3588999999999999999999633
No 37
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=98.84 E-value=2.1e-09 Score=98.48 Aligned_cols=68 Identities=22% Similarity=0.360 Sum_probs=61.2
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC---CCcEEEEccChhHHHHHHHHHHHHHHHh
Q 010498 149 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK---EDSIIIEGNSTDSVAKASEKIQAIIAEA 217 (509)
Q Consensus 149 ~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~---~~~I~I~G~s~~~v~~A~~~I~~i~~~~ 217 (509)
.+..+.||..++|.||||+|.++|+|+++|||+|+|+.... .+.|+|+|. .++|..|+..|+.+++++
T Consensus 91 ~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~~~ 161 (164)
T 2jvz_A 91 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDDGTGPEKIAHIMGP-PDRCEHAARIINDLLQSL 161 (164)
T ss_dssp SSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCCTTSSEEEEEEESC-HHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCCCCCCcEEEEEEcC-HHHHHHHHHHHHHHHhhh
Confidence 45788999999999999999999999999999999987644 357999997 899999999999999874
No 38
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=98.78 E-value=5.9e-09 Score=95.41 Aligned_cols=69 Identities=23% Similarity=0.336 Sum_probs=61.1
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCC----CCCcEEEEccChhHHHHHHHHHHHHHHH
Q 010498 147 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSK----KEDSIIIEGNSTDSVAKASEKIQAIIAE 216 (509)
Q Consensus 147 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~----~~~~I~I~G~s~~~v~~A~~~I~~i~~~ 216 (509)
......+.||..++|.||||+|.++++|+++|||+|+|++.. .++.|+|+| +.++|.+|+..|..++.|
T Consensus 87 ~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 87 PPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDMLPNSTERAITIAG-IPQSIIECVKQICVVMLE 159 (160)
T ss_dssp CSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCCCSTTCCEEEEEEEE-CHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHhc
Confidence 357899999999999999999999999999999999998632 246799999 589999999999988765
No 39
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=98.71 E-value=9.6e-09 Score=95.74 Aligned_cols=68 Identities=25% Similarity=0.322 Sum_probs=60.6
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC-----CCcEEEEccChhHHHHHHHHHHHHHHH
Q 010498 148 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK-----EDSIIIEGNSTDSVAKASEKIQAIIAE 216 (509)
Q Consensus 148 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~-----~~~I~I~G~s~~~v~~A~~~I~~i~~~ 216 (509)
.....+.||.+++|.||||+|.++|+|+++|||+|+|+.... .+.|+|+|. .++|.+|+..|..++.+
T Consensus 103 ~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~~~~~~~~~v~I~G~-~~~v~~A~~~I~~~i~e 175 (178)
T 2anr_A 103 ANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQNRVVTVSGE-PEQNRKAVELIIQKIQE 175 (178)
T ss_dssp GGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC----CCEEEEEEESS-HHHHHHHHHHHHHHHHS
T ss_pred ceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999999999987532 357999997 69999999999988875
No 40
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=98.68 E-value=1.1e-08 Score=94.95 Aligned_cols=65 Identities=22% Similarity=0.290 Sum_probs=57.1
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC------CCcEEEEccChhHHHHHHHHHHHH
Q 010498 148 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK------EDSIIIEGNSTDSVAKASEKIQAI 213 (509)
Q Consensus 148 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~------~~~I~I~G~s~~~v~~A~~~I~~i 213 (509)
.....+.||..+++.||||+|.++|+|+++|||+|+|+.... .+.|+|+| +.++|.+|+..|+.+
T Consensus 103 ~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~~~~v~I~G-~~~~v~~A~~~I~~~ 173 (174)
T 1j4w_A 103 LQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRG-TPQQIDYARQLIEEK 173 (174)
T ss_dssp -CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCCTTTSCTTEEEEEEEC-CHHHHHHHHHHHHHH
T ss_pred cEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCCCCCCCCCceEEEEEC-CHHHHHHHHHHHHHh
Confidence 457899999999999999999999999999999999987521 35799999 589999999999865
No 41
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=98.68 E-value=1.5e-08 Score=105.30 Aligned_cols=69 Identities=20% Similarity=0.232 Sum_probs=57.5
Q ss_pred ccCCCCeEEEEeccccccccccCCCc--hhHHHHHHHhCcEEEcCCCCC-------CCcEEEEccChhHHHHHHHHHHH
Q 010498 143 VPSAERHSLSVEVGASVIRFIKGKEG--STQKKFEKEMGVKIILPSSKK-------EDSIIIEGNSTDSVAKASEKIQA 212 (509)
Q Consensus 143 ~~~~~~~~~~v~Vp~~~~~~IIGk~G--~t~k~iE~eT~~~I~iP~~~~-------~~~I~I~G~s~~~v~~A~~~I~~ 212 (509)
..+...++..++|++.+|++|||++| .++++|+++|||+|+||..++ ...|+|+|. +++|..|+++|+.
T Consensus 180 ~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs-~e~V~~Ark~I~~ 257 (376)
T 3n89_A 180 PAPENNFTLHFTLSTYYVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGN-IDNVLKARRYIMD 257 (376)
T ss_dssp CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESC-HHHHHHHHHHHHH
T ss_pred cccccceEEEEEeCHHHHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeC-HHHHHHHHHHHHh
Confidence 44567899999999999999999999 566999999999999998654 246999995 8999999999973
No 42
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.57 E-value=5.1e-08 Score=88.20 Aligned_cols=65 Identities=22% Similarity=0.342 Sum_probs=50.7
Q ss_pred EEEEeccc------cccccccCCCchhHHHHHHHhCcEEEcCCCCCC---------------------CcEEEEccChh-
Q 010498 150 SLSVEVGA------SVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKE---------------------DSIIIEGNSTD- 201 (509)
Q Consensus 150 ~~~v~Vp~------~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~---------------------~~I~I~G~s~~- 201 (509)
+..|.||. .|+|.|||++|.|+|+||++|||+|.|-..|+- -.|.|+|.+.+
T Consensus 3 ~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~~ 82 (140)
T 2bl5_A 3 QEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQN 82 (140)
T ss_dssp EEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCCH
T ss_pred eeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCchh
Confidence 34566663 569999999999999999999999999876631 17889997554
Q ss_pred ----HHHHHHHHHHHHH
Q 010498 202 ----SVAKASEKIQAII 214 (509)
Q Consensus 202 ----~v~~A~~~I~~i~ 214 (509)
.+++|++.|+.++
T Consensus 83 ~~~~~l~~A~~~I~~lL 99 (140)
T 2bl5_A 83 RAELKLKRAVEEVKKLL 99 (140)
T ss_dssp HHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHC
Confidence 6777877776554
No 43
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.55 E-value=5e-08 Score=88.59 Aligned_cols=65 Identities=17% Similarity=0.325 Sum_probs=57.4
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhCc-EEEcCCCCCC------C--cEEEEccChhHHHHHHHHHHHHHHH
Q 010498 151 LSVEVGASVIRFIKGKEGSTQKKFEKEMGV-KIILPSSKKE------D--SIIIEGNSTDSVAKASEKIQAIIAE 216 (509)
Q Consensus 151 ~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~-~I~iP~~~~~------~--~I~I~G~s~~~v~~A~~~I~~i~~~ 216 (509)
..+.||...++.+|||+|.|+|.|.+.||+ +|+|++.++. + .|+|+|. +++|+.|+..|+.++.+
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~-~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGT-KDSIANATVLLDYHLNY 142 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEE-HHHHHHHHHHHHHHHHT
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeC-HHHHHHHHHHHHHHHHh
Confidence 789999999999999999999999999996 9999875432 2 3789996 89999999999988865
No 44
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=98.39 E-value=3.2e-07 Score=89.01 Aligned_cols=63 Identities=29% Similarity=0.327 Sum_probs=58.0
Q ss_pred EEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccC----hhHHHHHHHHHHHHH
Q 010498 150 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNS----TDSVAKASEKIQAII 214 (509)
Q Consensus 150 ~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s----~~~v~~A~~~I~~i~ 214 (509)
...+.||+..++.|||++|.+++.|+++||++|+|+. +++.|.|.|.+ ++++++|++.|.+|+
T Consensus 35 i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~--~~g~V~I~~~~~t~d~~~i~kA~~~I~~i~ 101 (219)
T 2e3u_A 35 EEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDS--ETGEVWITSTKETEDPLAVWKARDIVLAIG 101 (219)
T ss_dssp EEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECT--TTCEEEEEECTTCCSHHHHHHHHHHHHHHH
T ss_pred EEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEc--CCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence 4589999999999999999999999999999999985 35789999865 799999999999998
No 45
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=98.19 E-value=6.4e-07 Score=98.95 Aligned_cols=64 Identities=23% Similarity=0.233 Sum_probs=57.7
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHH
Q 010498 148 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAII 214 (509)
Q Consensus 148 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~i~ 214 (509)
--...++||++.+|.|||+||.++|+|+++|||+|+|- +++.|.|.|.+++.+++|++.|+.|+
T Consensus 566 p~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~---d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 566 PVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV---DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC---SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc---CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 44788999999999999999999999999999999997 36899999999999999999998775
No 46
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=98.15 E-value=1.2e-06 Score=79.40 Aligned_cols=94 Identities=18% Similarity=0.217 Sum_probs=73.9
Q ss_pred CCeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHHhhhCCCCCce
Q 010498 147 ERHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAEAVESPSLDYS 226 (509)
Q Consensus 147 ~~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~i~~~~~~~~k~~~t 226 (509)
.+++.++.||...+|.+||++|+++++|++|+|+.|..++ .+...+++.|.+++.|.+|+..+. - .+
T Consensus 2 ~~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~-~~~~~~i~~~~~p~~v~~~~~~l~-------~-----~e 68 (144)
T 2qnd_A 2 SRFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLD-EDTCTFHIYGEDQDAVKKARSFLE-------F-----AE 68 (144)
T ss_dssp --CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEE-TTTTEEEEEESSHHHHHHHHHHHC-------E-----EE
T ss_pred CceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccC-CCchheeeccCCHHHHHHHHHhhh-------c-----ce
Confidence 4678899999999999999999999999999995444333 234567888878889988876321 1 14
Q ss_pred EEEEeccccchhhhccHHHHHHHHhcc
Q 010498 227 HFVSLPLAVHPELVDKLVNFQNTILGI 253 (509)
Q Consensus 227 HFIsIPl~~hp~I~~~~~~f~~~Il~~ 253 (509)
..|.+|-..+..++|+.+..++.+.+.
T Consensus 69 ~~v~Vp~~~~g~~IGK~G~nIr~i~~~ 95 (144)
T 2qnd_A 69 DVIQVPRNLVGKVIGKNGKLIQEIVDK 95 (144)
T ss_dssp EEEEEEGGGHHHHHCGGGHHHHHHHHH
T ss_pred EEEEECHHHcCeeECCCCHHHHHHHHH
Confidence 667799988999999999999988765
No 47
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=97.91 E-value=1.2e-05 Score=77.94 Aligned_cols=53 Identities=23% Similarity=0.316 Sum_probs=48.3
Q ss_pred ccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 010498 159 VIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 216 (509)
Q Consensus 159 ~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~i~~~ 216 (509)
..|.||||+|+|++.||+.|||+|.|+. ..|.|.|. .++++.|++.|..++..
T Consensus 139 ~~GriIGk~G~tik~ie~~Tg~~I~v~~----~~v~i~G~-~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 139 VRGRIIGRKGRTRQIIEEMSGASVSVYG----KTVAIIGN-PIQIEIAKTAIEKLARG 191 (219)
T ss_dssp HHHHHHCGGGHHHHHHHHHHCCEEEEET----TEEEEEEC-HHHHHHHHHHHHHHHTT
T ss_pred hhheeECCCchHHHHHHHHhCceEEECC----eEEEEEeC-HHHHHHHHHHHHHHHcC
Confidence 5788999999999999999999999974 57999996 79999999999999854
No 48
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.75 E-value=3.6e-05 Score=73.01 Aligned_cols=64 Identities=20% Similarity=0.321 Sum_probs=56.4
Q ss_pred EEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEc----cChhHHHHHHHHHHHHHH
Q 010498 150 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEG----NSTDSVAKASEKIQAIIA 215 (509)
Q Consensus 150 ~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G----~s~~~v~~A~~~I~~i~~ 215 (509)
...+.||+...+.|||++|++++.|++.+|++|+|.. .++.|.|+. .++..+.+|++-|.+|..
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~--~~~~V~i~t~~~t~dp~~i~KA~dlI~ai~r 72 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDT--ENSMVIVEPEAEGIPPVNLMKAAEVVKAISL 72 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEET--TTTEEEEEESSTTSCHHHHHHHHHHHHHHHH
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEc--CCCeEEEEeCCCCCCHHHHHHHHHHHHHHHc
Confidence 3689999999999999999999999999999999965 356788871 357999999999999985
No 49
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=97.57 E-value=3.8e-05 Score=72.93 Aligned_cols=54 Identities=17% Similarity=0.243 Sum_probs=48.6
Q ss_pred cccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 010498 158 SVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 216 (509)
Q Consensus 158 ~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~i~~~ 216 (509)
...|.||||+|.|++.||+-|||+|.|.. ..|.|.|. .++++.|+..|..++..
T Consensus 107 r~~GrIIGk~G~tik~iE~~Tg~~I~v~~----~~v~i~G~-~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 107 RIKGRIIGEGGRARRTIEEMTDTYINVGE----YEVAIIGD-YERAMAAKQAIEMLAEG 160 (191)
T ss_dssp HHHHHHHCGGGHHHHHHHHHHTCEEEECS----SEEEEEEE-HHHHHHHHHHHHHHHTT
T ss_pred HHhhheeCCCccHHHHHHHHHCceEEEcC----CEEEEEeC-hHHHHHHHHHHHHHHcC
Confidence 46899999999999999999999999975 48999996 79999999999988853
No 50
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.49 E-value=1.9e-05 Score=88.34 Aligned_cols=65 Identities=15% Similarity=0.281 Sum_probs=14.0
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 010498 149 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 216 (509)
Q Consensus 149 ~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~i~~~ 216 (509)
-..++.||++.++-|||+||.++|+|.++||++|+|- +++.|.|.+.+++.+++|+++|+.|..+
T Consensus 570 ~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~---ddG~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 570 KIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN---DDGVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp C----------------------------------------------CCSCHHHHHHHHHC-------
T ss_pred eEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE---CCceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 3678999999999999999999999999999999996 3588999999999999999999988865
No 51
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=96.98 E-value=0.0019 Score=63.33 Aligned_cols=182 Identities=10% Similarity=0.009 Sum_probs=103.8
Q ss_pred CceEEEEccCCcchhHHHHhhccCcccccccccCCCCCCCCCCCCcccccCCCCceEEeeccccCC-------------H
Q 010498 283 EHKVAVELNIGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLWN-------------K 349 (509)
Q Consensus 283 ~~FVAv~l~~~~~~~~v~~~q~~i~~~~~~~~~~r~~~~~~~Gld~~~fv~p~~LHLTL~fLgl~d-------------e 349 (509)
|.+|+---...+..+.|.++|+.|.- + ..-+.-.|+||+.+|+||.=+-.-. +
T Consensus 43 nTvI~~l~~~s~~~~~l~~iq~~L~~-------~-------~~~~~~~~lPpsS~HMTvfdgv~e~~r~~~~wP~~L~~d 108 (243)
T 2fsq_A 43 NTVVCHLVEGSQTESAIVSTRQRFLD-------M-------PEASQLAFTPVSSLHMTVFQGVIESRRALPYWPQTLPLD 108 (243)
T ss_dssp EEEEEEBCTTSHHHHHHHHHHHHHHT-------S-------GGGGGEEECCGGGCEEEEEEEEETTCCSTTSSCTTSCTT
T ss_pred CeEEEecCCCChHHHHHHHHHHHHHh-------c-------cccCceeeCCchhhhhhhccccccccccCCCCCccCccc
Confidence 45555433445567899999998851 0 1112236999999999997543211 3
Q ss_pred HHHHHHHHHHHHhHHhhhhhcCCCCeEEEEceeccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCccccC
Q 010498 350 DRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRD 429 (509)
Q Consensus 350 e~v~~a~~aL~~i~~~i~~~L~~~pf~L~l~GLg~F~~dp~~pRVLyagV~~~~~~~~L~~L~~~L~~~f~~~Gl~~e~~ 429 (509)
..++.+...+.+- +...-...||.+.+.|+. +. -|..++..+ .....|.++.+.|.+ ..|+...+
T Consensus 109 ~~l~~~~~~~~~~---l~~~~~~~p~~~~v~~l~--~~-----~v~L~Pade-~~~~~L~~~R~~l~q---~lGi~~p~- 173 (243)
T 2fsq_A 109 TPIDAVTDYYRDR---LSTFPTLPAFNMRVTGLR--PV-----GMVMKGATA-EDDSIVALWRDTFAD---FFGYRHPD- 173 (243)
T ss_dssp CCHHHHHHHHHHH---GGGCCCCCCCCEEEEEEE--TT-----EEEEEESSH-HHHHHHHHHHHHHHH---HHTCCCTT-
T ss_pred chHHHHHHHHHHH---HhcccCCCCeEEEEeccc--cc-----eEEEecCCH-HHHHHHHHHHHHHHH---HhCCCCCC-
Confidence 4566655555432 222222379999999993 32 466666654 235567666666655 46887642
Q ss_pred CCCCceeeEEeeeecccccccCCCccccccHHHHHHHhCC---CccccEEecEEEEEeeecCCCCCceeEEEEEeC
Q 010498 430 YNKKLKLHATLMNIRHKKRRKGTRRVDYFDARDIFKQFGS---KEWGEYLIKEAHLSQRFVYDESGFYHCCASIPF 502 (509)
Q Consensus 430 ~~r~fkPHiTLaR~k~~~~~~~~~~~~~fda~~il~~~~d---~~fG~~~V~eI~Ls~l~~~~~~g~Y~~i~si~L 502 (509)
...|++||||+..-.+... ...-....+++++.. ..++.+.+..+.+|.-.. - -.|.++..+.+
T Consensus 174 -hd~y~fHITLgY~~~~l~~-----ee~~~~~~~l~~~~~~l~~~~p~i~l~~~efc~F~D--M-~~F~~~~~l~~ 240 (243)
T 2fsq_A 174 -HDTYEFHITLSYIVSWFEP-----ECLPRWQAMLDEELEKLRVAAPVIQMRPPAFCEFKD--M-NHFKELVVFDK 240 (243)
T ss_dssp -GGGCCEEEECEEESSCBCG-----GGHHHHHHHHHHHHHHHHHHCSSCCBCCCEEEEESS--T-TCCEEEEECC-
T ss_pred -CcceEEEEEEEeccCCCCH-----HHHHHHHHHHHHHHHHHHhhCCeeeecCcceEEeCC--h-hhhHHHHhccc
Confidence 4689999999987543221 000112233333322 124556788888887532 1 24555544443
No 52
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=96.96 E-value=0.0013 Score=58.75 Aligned_cols=68 Identities=13% Similarity=0.107 Sum_probs=57.7
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCC--CCcEEEEccChhHHHHHHHHHHHHHHHhhh
Q 010498 151 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKK--EDSIIIEGNSTDSVAKASEKIQAIIAEAVE 219 (509)
Q Consensus 151 ~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~--~~~I~I~G~s~~~v~~A~~~I~~i~~~~~~ 219 (509)
..+.|...+.+.|+|++|+.|+.||..++|.|++-+-+. ...|+|-|+ ...-.+|+..|+.+.+--++
T Consensus 58 lVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s~g~tEVtIfG~-~~~Q~rak~MI~sLA~~hr~ 127 (140)
T 3v69_A 58 KRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGPERRAEIWIFGP-PPFRRDVDRMLTDLAHYCRM 127 (140)
T ss_dssp EEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCTTSCEEEEEESC-HHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCCCCcEEEEEECC-HHHHHHHHHHHHHHHHHHHH
Confidence 478899999999999999999999999999999977655 457999996 67778888888888765443
No 53
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.33 E-value=0.0029 Score=71.04 Aligned_cols=65 Identities=22% Similarity=0.387 Sum_probs=0.0
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 010498 149 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 216 (509)
Q Consensus 149 ~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~i~~~ 216 (509)
-...+.||++.++-+||+||.+++.|.++||+.|+|-. .+.|.|.+.+...+.+|+++|+.+..+
T Consensus 560 ~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~---dg~v~I~~~~~~~~~~a~~~i~~i~~~ 624 (723)
T 3cdi_A 560 RIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED---DGTVKIAATDGEKAKHAIRRIEEITAE 624 (723)
T ss_dssp --------------------------------------------------------------------
T ss_pred eEEEEEECHHHhcccccccceeeeeeehhhCceEEecC---CccEEEecCCHHHHHHHHHHHHHHhhh
Confidence 35678899999999999999999999999999999864 578999998888889998888776543
No 54
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=95.05 E-value=0.0013 Score=74.15 Aligned_cols=62 Identities=16% Similarity=0.298 Sum_probs=23.7
Q ss_pred EEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHH
Q 010498 150 SLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAII 214 (509)
Q Consensus 150 ~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~i~ 214 (509)
...+.||++.+|-+||++|.++|.|.++||+.|+|-. .+.|.|.+.+.....+|+++|+.|.
T Consensus 599 ~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~---dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 599 IITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED---DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CCCC------------------CTTCCCCCSCC-----------CCCBSSHHHHCC---------
T ss_pred eEEEEEChHHeehcccccceeeehhhHhhCCEEEecC---CceEEEecCCHHHHHHHHHHHHHhc
Confidence 3568899999999999999999999999999999973 5789999988888888877776554
No 55
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=81.06 E-value=3.1 Score=40.09 Aligned_cols=63 Identities=25% Similarity=0.275 Sum_probs=54.1
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHHH
Q 010498 151 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIAE 216 (509)
Q Consensus 151 ~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~i~~~ 216 (509)
.-+.|+....+.++|++|..+..|.+++++.|.+= .++-|.|.+.+......+..-|+.+-.+
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG---~NG~IWi~~~~~~~~~~~~~ai~~~e~~ 212 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVA---RNGRIHLECPNEDLEAIAVMAIKIIDEE 212 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEE---TTTEEEEECSCHHHHHHHHHHHHHHHHC
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEe---CCCEEEEecCCHHHHHHHHHHHHHHHhh
Confidence 67789999999999999999999999999999983 4789999998777788777777766544
No 56
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=75.04 E-value=3.5 Score=39.65 Aligned_cols=61 Identities=26% Similarity=0.376 Sum_probs=49.9
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHHHH
Q 010498 151 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAIIA 215 (509)
Q Consensus 151 ~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~i~~ 215 (509)
.-+.++..+.+.++|++|..+..|.+.+++.|.+ +.++-|.|.+.+ .....+...|+.+-.
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~v---G~NG~IWi~~~~-~~~~~~~~ai~~~e~ 198 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVV---GQNGLIWVNGDR-RKVSIAEEAIYLIEQ 198 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEE---CTTSEEEEESCH-HHHHHHHHHHHHHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEE---ECCcEEEEeCCc-hhHHHHHHHHHHHHh
Confidence 5678999999999999999999999999999998 457899999863 456666666655544
No 57
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=71.89 E-value=3.5 Score=38.14 Aligned_cols=59 Identities=8% Similarity=0.088 Sum_probs=48.5
Q ss_pred EEEeccccccccccCCCch-hHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHH
Q 010498 151 LSVEVGASVIRFIKGKEGS-TQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQA 212 (509)
Q Consensus 151 ~~v~Vp~~~~~~IIGk~G~-t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~ 212 (509)
.-+.||..+.+.++|++|. .++.|.+++++.|.+= .+|-|.|.+.+......+..-|+.
T Consensus 93 ~l~~v~~~~v~rl~~~~~~~~l~~l~~~~~~ei~vG---~NG~IWi~~~~~~~~~~v~~aI~~ 152 (175)
T 2ja9_A 93 MIIDVNLNFARQLLFNNDFPLLKVLAAHTKFEVAIG---LNGKIWVKCEELSNTLACYRTIME 152 (175)
T ss_dssp EEEECCHHHHHHHHHCTTCCHHHHHHTTCCCEEEEE---TTTEEEEECSSHHHHHHHHHHHHH
T ss_pred EEEEEcHHHhhHHhcCCCcchHHhhhccCCeEEEEE---CCcEEEEecCCHHHHHHHHHHHHH
Confidence 3688999999999999888 9999999999999983 478999999876555555555554
No 58
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=69.37 E-value=2.6 Score=37.83 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=32.7
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEcC
Q 010498 149 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILP 185 (509)
Q Consensus 149 ~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP 185 (509)
-...+-|+....|..||++|+.++.|++++|-+|+|=
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV 72 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVV 72 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEE
Confidence 4556778888899999999999999999999999873
No 59
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=64.87 E-value=0.077 Score=45.02 Aligned_cols=51 Identities=16% Similarity=0.081 Sum_probs=41.5
Q ss_pred EEccChhHHHHHHHHHHHHHHHhhhCCCCCceEEEEeccccchhhhccHHHHHHHHhcc
Q 010498 195 IEGNSTDSVAKASEKIQAIIAEAVESPSLDYSHFVSLPLAVHPELVDKLVNFQNTILGI 253 (509)
Q Consensus 195 I~G~s~~~v~~A~~~I~~i~~~~~~~~k~~~tHFIsIPl~~hp~I~~~~~~f~~~Il~~ 253 (509)
|+|+ +++|..|+..|..++.+ ..+.-|.||..+|.+|+|+.+..++.|.++
T Consensus 5 i~G~-~~~V~~A~~~i~~~~~~-------~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~ 55 (102)
T 2ctf_A 5 SSGE-PEKLGQALTEVYAKANS-------FTVSSVAAPSWLHRFIIGKKGQNLAKITQQ 55 (102)
T ss_dssp CCCC-CCCCCCSCCCCCCCCCC-------CEEEEEECCSTTHHHHHTTTTCHHHHHHHH
T ss_pred cCcC-HHHHHHHHHHHHHHhcC-------eEEEEEEeCHHHHhhhcCCCCccHHHHHHH
Confidence 5775 68888888888754432 257888899999999999999999999875
No 60
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=63.89 E-value=1.4 Score=39.58 Aligned_cols=38 Identities=13% Similarity=0.080 Sum_probs=34.6
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcC
Q 010498 148 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILP 185 (509)
Q Consensus 148 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP 185 (509)
.....+.||..-.+..|||+|.+.+-..+=||.+|+|-
T Consensus 102 ~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 102 VKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred cEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 46778999999999999999999999999999988774
No 61
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=57.64 E-value=3.9 Score=40.87 Aligned_cols=59 Identities=14% Similarity=0.191 Sum_probs=48.6
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHH
Q 010498 151 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQA 212 (509)
Q Consensus 151 ~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~ 212 (509)
.-++||..+.+.++|+++..++.|.+.+++.|.+= .++-|.|.+.+......+..-|+.
T Consensus 212 ~l~~Vs~~lvrrl~~~~~~~l~~L~~~~~~eI~vG---~NG~IWI~~~~~~~~~~i~~aI~~ 270 (289)
T 2nn6_G 212 LLFKVTLGLIRKLLAPDCEIIQEVGKLYPLEIVFG---MNGRIWVKAKTIQQTLILANILEA 270 (289)
T ss_dssp EEECCCHHHHHHHHCTTCSHHHHTTCSSSCCCEEE---TTTEEEECCSSHHHHHHHHHHHHH
T ss_pred EEEEEChHHhhhhhcCchhHHHHhcccCCeEEEEE---CCcEEEEecCChhHHHHHHHHHHH
Confidence 46899999999999999999999999999999873 478999999876665555555543
No 62
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=53.74 E-value=2 Score=42.01 Aligned_cols=60 Identities=18% Similarity=0.199 Sum_probs=41.6
Q ss_pred EEEeccccccccccCCCchhHHHHHHHhCcEEEcCCCCCCCcEEEEccChhHHHHHHHHHHHH
Q 010498 151 LSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSSKKEDSIIIEGNSTDSVAKASEKIQAI 213 (509)
Q Consensus 151 ~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~~~~~~I~I~G~s~~~v~~A~~~I~~i 213 (509)
.-+.++..+.+.++|++|..+..|.+.++|.|.+ +.++-|.|.+.+...+..+..-|+.+
T Consensus 157 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~v---G~NG~IWi~~~~~~~~~~~~~aI~~~ 216 (251)
T 2je6_I 157 IVIDIMPVKVPRVIGKNKSMYETLTSKSGCSIFV---ANNGRIWATCPSRFSEEILIEAIRKI 216 (251)
T ss_dssp CEEECCGGGHHHHHCGGGHHHHHHHTTC---CEE---CTTSEEEC-----CTTCCTHHHHTTT
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEE---ECCcEEEEeCCCHHHHHHHHHHHHHH
Confidence 5678999999999999999999999999999988 45789999986554555555555433
No 63
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=51.16 E-value=9 Score=37.45 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=36.0
Q ss_pred eEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCC
Q 010498 149 HSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSS 187 (509)
Q Consensus 149 ~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~ 187 (509)
....+.||....+.-|||+|.+.|.--+=||.+|+|-+.
T Consensus 184 ~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 222 (251)
T 2asb_A 184 RAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 222 (251)
T ss_dssp TEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEES
T ss_pred cEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEH
Confidence 578999999999999999999999999999999999553
No 64
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=44.51 E-value=12 Score=38.23 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=36.1
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCC
Q 010498 148 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPS 186 (509)
Q Consensus 148 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~ 186 (509)
.....+.||....+.-|||+|.+.|.--.=||.+|+|-+
T Consensus 302 ~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s 340 (344)
T 1hh2_P 302 NKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKP 340 (344)
T ss_dssp TTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEE
T ss_pred CCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceee
Confidence 567899999999999999999999999999999999854
No 65
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=44.47 E-value=12 Score=38.43 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=36.5
Q ss_pred CeEEEEeccccccccccCCCchhHHHHHHHhCcEEEcCCC
Q 010498 148 RHSLSVEVGASVIRFIKGKEGSTQKKFEKEMGVKIILPSS 187 (509)
Q Consensus 148 ~~~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~~~I~iP~~ 187 (509)
.....+.||..-.+..|||+|.+.+..-+=||.+|+|-+.
T Consensus 306 ~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~ 345 (366)
T 1k0r_A 306 ARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGD 345 (366)
T ss_dssp TTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEES
T ss_pred CcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEH
Confidence 4578899999999999999999999999999999999553
No 66
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=43.51 E-value=11 Score=33.99 Aligned_cols=30 Identities=13% Similarity=0.196 Sum_probs=25.7
Q ss_pred EEEEeccccccccccCCCchhHHHHHHHhC
Q 010498 150 SLSVEVGASVIRFIKGKEGSTQKKFEKEMG 179 (509)
Q Consensus 150 ~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~ 179 (509)
.+.+.|.-+-.|.||||.|.|++.|+-=++
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 567778888999999999999999987663
No 67
>3i24_A HIT family hydrolase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.50A {Vibrio fischeri ES114}
Probab=40.84 E-value=41 Score=29.87 Aligned_cols=83 Identities=6% Similarity=0.000 Sum_probs=52.9
Q ss_pred ccccCCHHHHHHHHHHHHHhHHhhhhhcCCCCeEEEEceeccC----------CCCCCCceEEEEeee-ccCChhHHHHH
Q 010498 343 MLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLM----------RGSKDKARILYAPVE-EIGDGDRLLHA 411 (509)
Q Consensus 343 fLgl~dee~v~~a~~aL~~i~~~i~~~L~~~pf~L~l~GLg~F----------~~dp~~pRVLyagV~-~~~~~~~L~~L 411 (509)
-+.++++++.......+..+...+.+.++...+.+..-|-.+| .+|+..|..+|.... ..-+.+.|.++
T Consensus 46 ~l~dL~~e~~~~l~~~~~~va~al~~~~~~~~~Ni~~aGq~V~HlH~HvIPR~~~D~~~~~~vw~~~~~~~~~~eel~~~ 125 (149)
T 3i24_A 46 EIHHMTDEQQIQFIKESSAVAQLLEDNFSPDKINIGALGNLVPQLHIHHIARFTTDVAWPGPVWGNTTGVIRAQSSQTQL 125 (149)
T ss_dssp SGGGSCHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEECCSSCCSCCEEEEEECTTSTTTTSCSTTCSCCCBCCHHHHHHH
T ss_pred ChhHCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEhhhhCCCCEEEEEEeCCccCCCCCCcceecCCCCCCCCHHHHHHH
Confidence 4556678888777777777776676665555566655554444 334455555564221 11235789999
Q ss_pred HHHHHHHHHHCCCc
Q 010498 412 CQVIIDAFNEAGLV 425 (509)
Q Consensus 412 ~~~L~~~f~~~Gl~ 425 (509)
++.|++.|...|.-
T Consensus 126 a~kIr~~L~~~~~~ 139 (149)
T 3i24_A 126 VDLLRDKLSNISGF 139 (149)
T ss_dssp HHHHHHHHTTSTTC
T ss_pred HHHHHHHHHhccch
Confidence 99999999875543
No 68
>2fsq_A ATU0111 protein; alpha-beta barrel, structural genomics, PSI, protein structu initiative, midwest center for structural genomics; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: d.61.1.4
Probab=39.68 E-value=23 Score=34.33 Aligned_cols=62 Identities=15% Similarity=0.184 Sum_probs=39.9
Q ss_pred CCcchhHHHHhhccCcccccccccCCCCCCCCCCCCcccccCCCCceEEeeccccC-CHHHHHHHHHHHHHhHHhhhh
Q 010498 292 IGDNSERVKVDRTSIPIVGYEAKASRPSTSSDLGIDKSIFIKPKTFHLTVLMLKLW-NKDRVNAATNVLKSISSKVMD 368 (509)
Q Consensus 292 ~~~~~~~v~~~q~~i~~~~~~~~~~r~~~~~~~Gld~~~fv~p~~LHLTL~fLgl~-dee~v~~a~~aL~~i~~~i~~ 368 (509)
+++..++|..+++.|. +..||.. -....-.+||||++++.+ ++++......+|.++.+.+..
T Consensus 149 de~~~~~L~~~R~~l~--------------q~lGi~~-p~hd~y~fHITLgY~~~~l~~ee~~~~~~~l~~~~~~l~~ 211 (243)
T 2fsq_A 149 TAEDDSIVALWRDTFA--------------DFFGYRH-PDHDTYEFHITLSYIVSWFEPECLPRWQAMLDEELEKLRV 211 (243)
T ss_dssp SHHHHHHHHHHHHHHH--------------HHHTCCC-TTGGGCCEEEECEEESSCBCGGGHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH--------------HHhCCCC-CCCcceEEEEEEEeccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 3444678888887763 1334421 235678899999999855 455666666777777655543
No 69
>1j26_A Immature colon carcinoma transcript 1; peptide chain release factors, RF-1, the GGQ motif, immature carcinoma transcript 1; NMR {Mus musculus} SCOP: d.50.4.1
Probab=34.78 E-value=19 Score=30.89 Aligned_cols=55 Identities=25% Similarity=0.414 Sum_probs=36.4
Q ss_pred CCCchhHHHHHHHhCcEEEcCCC-------------------CCCCcEEEEcc----ChhHHHHHHHHHHHHHHHhhh
Q 010498 165 GKEGSTQKKFEKEMGVKIILPSS-------------------KKEDSIIIEGN----STDSVAKASEKIQAIIAEAVE 219 (509)
Q Consensus 165 Gk~G~t~k~iE~eT~~~I~iP~~-------------------~~~~~I~I~G~----s~~~v~~A~~~I~~i~~~~~~ 219 (509)
|+||-+.++.+-.-..++.+|.. ..++.|+|+.. ...+.+.|.+++..++.++..
T Consensus 31 GpGGQnVNKv~SaV~Lrf~i~t~~~Lp~~~k~rl~~~~~~ri~~~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~a~~ 108 (112)
T 1j26_A 31 GPGGQNVNKVNSKAEVRFHLASADWIEEPVRQKIALTHKNKINKAGELVLTSESSRYQFRNLAECLQKIRDMIAEASG 108 (112)
T ss_dssp CSSSSCCSSCCCEEEEEEEGGGCTTSCHHHHHHHHHHTTTTBCSSSEEEEEECCCSSHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCccCCcceEEEEEeccccccCCHHHHHHHHHhhccccccCCeEEEEECCccCHHHHHHHHHHHHHHHHHHhhc
Confidence 77777776654333333455542 11456888872 357899999999999998655
No 70
>1jh6_A Cyclic phosphodiesterase; ADP-ribose 1'',2''-cyclic phosphate, RNA processing, 2',3'-C nucleotide phosphodiesterase, hydrolase; 1.80A {Arabidopsis thaliana} SCOP: d.61.1.1 PDB: 1fsi_A 1jh7_A*
Probab=33.83 E-value=48 Score=30.02 Aligned_cols=41 Identities=15% Similarity=0.172 Sum_probs=25.9
Q ss_pred CCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCccccCCCCCceeeEEe
Q 010498 389 KDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVFHRDYNKKLKLHATL 440 (509)
Q Consensus 389 p~~pRVLyagV~~~~~~~~L~~L~~~L~~~f~~~Gl~~e~~~~r~fkPHiTL 440 (509)
+..-+-+|+-+ +.+-.+.|.++.+.+...+ |. .++.|||||
T Consensus 5 ~~~~~~f~~~p-p~~~~~~l~~~~~~l~~~~---~~-------~~~~~HiTL 45 (189)
T 1jh6_A 5 KKDVYSVWALP-DEESEPRFKKLMEALRSEF---TG-------PRFVPHVTV 45 (189)
T ss_dssp CCEEEEEEEEE-CTTTHHHHHHHHHHHHHHH---TC-------CCCCCCEEE
T ss_pred CCCcEEEEEEC-CHHHHHHHHHHHHHHHHHc---CC-------CCCCCEEEE
Confidence 44557788877 4334456777766665532 32 247999999
No 71
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=31.95 E-value=18 Score=29.85 Aligned_cols=30 Identities=10% Similarity=0.179 Sum_probs=22.0
Q ss_pred EEEEeccccccccccCCCchhHHHHHHHhC
Q 010498 150 SLSVEVGASVIRFIKGKEGSTQKKFEKEMG 179 (509)
Q Consensus 150 ~~~v~Vp~~~~~~IIGk~G~t~k~iE~eT~ 179 (509)
.+.|.|-..+-+.|||++|..+++|.++..
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~l~ 65 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAVVQ 65 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHHHH
Confidence 355666667789999999998877655443
No 72
>2o5a_A BH1328 protein; BHR21, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.70A {Bacillus halodurans} SCOP: d.218.1.12
Probab=31.22 E-value=1.1e+02 Score=26.42 Aligned_cols=63 Identities=11% Similarity=0.233 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhHHhhhhhcCCCCeEEEEceeccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCcc
Q 010498 349 KDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVF 426 (509)
Q Consensus 349 ee~v~~a~~aL~~i~~~i~~~L~~~pf~L~l~GLg~F~~dp~~pRVLyagV~~~~~~~~L~~L~~~L~~~f~~~Gl~~ 426 (509)
.+-++.+.++|.+-+ ...-..|.++|+..+-+ |.-+....+...++.+++.|.+.+.+.|+.+
T Consensus 4 ~~l~~~i~~al~dkK-------a~DI~vlDv~~~s~~~D--------yfVIatg~S~rqv~Aiad~v~~~lk~~g~~~ 66 (125)
T 2o5a_A 4 QELLQLAVNAVDDKK-------AEQVVALNMKGISLIAD--------FFLICHGNSEKQVQAIAHELKKVAQEQGIEI 66 (125)
T ss_dssp HHHHHHHHHHHHHTT-------CEEEEEEECBTTBC--C--------EEEEEEESSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHcC-------CCCeEEEEcCCCCcccC--------EEEEEEcCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 445566666776653 12345678889888876 3333332346789999999999999998864
No 73
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=31.17 E-value=2.6 Score=34.99 Aligned_cols=30 Identities=20% Similarity=0.230 Sum_probs=27.6
Q ss_pred ceEEEEeccccchhhhccHHHHHHHHhccc
Q 010498 225 YSHFVSLPLAVHPELVDKLVNFQNTILGIT 254 (509)
Q Consensus 225 ~tHFIsIPl~~hp~I~~~~~~f~~~Il~~~ 254 (509)
.++.+.||..+|..|+|+.+..++.|.++.
T Consensus 17 vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eet 46 (95)
T 2ctj_A 17 AEVEVSIPAKLHNSLIGTKGRLIRSIMEEC 46 (95)
T ss_dssp CCEEEECCHHHHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEECHHHHhhhCCCCchhHHHHHHHc
Confidence 688899999999999999999999998873
No 74
>1tac_A TAT protein; transcription regulation, HIV-1, transactivation, RNA binding, structure; NMR {Human immunodeficiency virus 1} SCOP: j.40.1.1
Probab=29.46 E-value=24 Score=28.80 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=21.6
Q ss_pred CCCccccccccccccCCcccccccccccccc
Q 010498 31 GGCSYYSLSCDWKMGGARDNQGAVYGDKKQK 61 (509)
Q Consensus 31 ~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~k 61 (509)
-.|+|||..| +-++.-+++++.|||+
T Consensus 28 KkCc~HCq~C-----F~~KGLGIsYgRkkRr 53 (86)
T 1tac_A 28 KKSAYHSQVA-----FITKGLGISYGRKKRR 53 (86)
T ss_dssp TTTTTTCCCS-----CSSTTSSSSSCCCSGG
T ss_pred cchhhhhhHH-----HccCCCceEecccccc
Confidence 4689999999 6677788999998876
No 75
>3ohe_A Histidine triad (HIT) protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; HET: MSE; 1.20A {Marinobacter aquaeolei}
Probab=28.51 E-value=1.2e+02 Score=26.14 Aligned_cols=81 Identities=5% Similarity=-0.023 Sum_probs=50.4
Q ss_pred eccccCCHHHHHHHHHHHHHhHHhhhhhcCCCCeEEEEceeccC----------CCCCCCceEEEEee-eccCChhHHHH
Q 010498 342 LMLKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLM----------RGSKDKARILYAPV-EEIGDGDRLLH 410 (509)
Q Consensus 342 ~fLgl~dee~v~~a~~aL~~i~~~i~~~L~~~pf~L~l~GLg~F----------~~dp~~pRVLyagV-~~~~~~~~L~~ 410 (509)
.-+.++++++.......+..+...+.+.+....+.+-.-|-.+| .+|+..|..+|... ...-+.+.|.+
T Consensus 45 ~~l~dl~~~~~~~l~~~~~~v~~~l~~~~~~~~~N~~~aGq~V~HlH~HviPR~~~D~~~p~~vw~~~~~~~~~~eel~~ 124 (137)
T 3ohe_A 45 REIYELPNEQQQRLLFESSALSEGMMELFGGDKMNVAALGNMVPQLHLHHIVRYQGDPAWPGPVWGKQPPVPYTEEQQAS 124 (137)
T ss_dssp CSGGGSCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEECCSSCCSCCEEEEEECTTSTTTTSCCTTSSCCCCCCHHHHHH
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeeccCcCCEEEEEEeCCCCCCCCCCcccccCCCCCCCCHHHHHH
Confidence 34566788888877778877777676665544455554443333 33455555566421 11123578999
Q ss_pred HHHHHHHHHHHC
Q 010498 411 ACQVIIDAFNEA 422 (509)
Q Consensus 411 L~~~L~~~f~~~ 422 (509)
+++.|++.|.+.
T Consensus 125 ~~~~ir~~L~~~ 136 (137)
T 3ohe_A 125 VKAKLQPLLEQL 136 (137)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhc
Confidence 999999988753
No 76
>2id1_A Hypothetical protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.00A {Chromobacterium violaceum} SCOP: d.218.1.12
Probab=27.64 E-value=1.5e+02 Score=25.89 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhHHhhhhhcCCCCeEEEEceeccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCcc
Q 010498 350 DRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVF 426 (509)
Q Consensus 350 e~v~~a~~aL~~i~~~i~~~L~~~pf~L~l~GLg~F~~dp~~pRVLyagV~~~~~~~~L~~L~~~L~~~f~~~Gl~~ 426 (509)
+-++.+.++|.+-+ ...-..|.++|+..+-+ |.-+....+...++.+++.|.+.+.+.|+.+
T Consensus 5 ~l~~~i~~al~dkK-------a~DI~vlDv~~~s~~~D--------yfVIaTg~S~rqv~Aiad~v~~~lk~~g~~~ 66 (130)
T 2id1_A 5 EISKLAIEALEDIK-------GKDIIELDTSKLTSLFQ--------RMIVATGDSNRQVKALANSVQVKLKEAGVDI 66 (130)
T ss_dssp HHHHHHHHHHHHTT-------CEEEEEEEGGGTCSSCS--------EEEEEECSSHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHcC-------CCCeEEEEcCCCCcccC--------EEEEEEcCCHHHHHHHHHHHHHHHHHcCCcC
Confidence 44555666666543 12445678899988876 4434333356789999999999999999865
No 77
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=25.50 E-value=37 Score=33.20 Aligned_cols=37 Identities=24% Similarity=0.248 Sum_probs=26.6
Q ss_pred CeEEEEeccccc-cccccCCCchhHHH--------HHHHhCcEEEc
Q 010498 148 RHSLSVEVGASV-IRFIKGKEGSTQKK--------FEKEMGVKIIL 184 (509)
Q Consensus 148 ~~~~~v~Vp~~~-~~~IIGk~G~t~k~--------iE~eT~~~I~i 184 (509)
.....+.|.++- -+.|||++|+++|+ ||+-+|+++.+
T Consensus 239 ~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 239 VIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp EEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 456677787764 56689999999987 45556666554
No 78
>3udc_A Small-conductance mechanosensitive channel, C-TER peptide from small-conductance...; membrane protein; 3.35A {Thermoanaerobacter tengcongensis} PDB: 3t9n_A*
Probab=25.19 E-value=2.9e+02 Score=26.57 Aligned_cols=71 Identities=14% Similarity=0.171 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhHHhhhh---hcCCCCeEEEEceeccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCcc
Q 010498 352 VNAATNVLKSISSKVMD---ALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVF 426 (509)
Q Consensus 352 v~~a~~aL~~i~~~i~~---~L~~~pf~L~l~GLg~F~~dp~~pRVLyagV~~~~~~~~L~~L~~~L~~~f~~~Gl~~ 426 (509)
++++.+.|+++.+.+.+ .+..+|..+.+.+++-..= .-+ +|+-+.+.+....-.++...|.++|.+.|+..
T Consensus 194 ~~~v~~~l~~i~~~~~~~~~~~~~~~~~v~~~~~~~s~i---~~~-v~~~~~~~~~~~~~~~l~~~I~~~f~~~gI~i 267 (285)
T 3udc_A 194 VDKIIEGLQEICEEVKKSRDDLIEGPTVLGITDMQDSKL---VIM-VYAKTQPMQKWAVERDIRYRVKKMFDQKNISF 267 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHCSSBSSCCEEEEEEEEETTEE---EEE-EEEEESTTCHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHHHHHhcccccccCcccccccccCCCEE---EEE-EEEEECcchHHHHHHHHHHHHHHHHHHCCCcC
Confidence 44444555554332221 2223555666666554311 112 34444432222334578889999999999976
No 79
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=24.58 E-value=96 Score=27.46 Aligned_cols=56 Identities=20% Similarity=0.315 Sum_probs=39.8
Q ss_pred cCCCchhHHHHHHHhCcEEE-------cCCC-------------CCCCcEEEEcc----ChhHHHHHHHHHHHHHHHhhh
Q 010498 164 KGKEGSTQKKFEKEMGVKII-------LPSS-------------KKEDSIIIEGN----STDSVAKASEKIQAIIAEAVE 219 (509)
Q Consensus 164 IGk~G~t~k~iE~eT~~~I~-------iP~~-------------~~~~~I~I~G~----s~~~v~~A~~~I~~i~~~~~~ 219 (509)
=|+||-+.++. +|.++|. ||.. ..+|.|+|+.. ...+.+.|.+++..++.++..
T Consensus 23 sGpGGQnVNKv--~SaV~L~~~~~~s~lp~~~k~rL~~~~~~rit~~G~ivv~~q~~RSQ~~Nr~~A~~rL~~~l~~a~~ 100 (140)
T 4dh9_Y 23 QGAGGQHVNKT--STAIHLRFDIRASSLPEYYKERLLAASHHLISSDGVIVIKAQEYRSQELNREAALARLVAMIKELTT 100 (140)
T ss_dssp CSSSSHHHHTT--CCCEEEEECCSSSSSCSHHHHHHHSCCCTTSCSSCCCCEEECCCSSHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCccccc--cceEEEEEecccccCCHHHHHHHHHHhccccccCCcEEEEEcCCcCHHHHHHHHHHHHHHHHHHhcc
Confidence 48999999875 5677776 4530 01356788773 347899999999999999776
Q ss_pred CC
Q 010498 220 SP 221 (509)
Q Consensus 220 ~~ 221 (509)
.|
T Consensus 101 ~p 102 (140)
T 4dh9_Y 101 EK 102 (140)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 80
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=22.42 E-value=91 Score=26.38 Aligned_cols=31 Identities=16% Similarity=0.319 Sum_probs=24.2
Q ss_pred CCcEEEEcc----ChhHHHHHHHHHHHHHHHhhhC
Q 010498 190 EDSIIIEGN----STDSVAKASEKIQAIIAEAVES 220 (509)
Q Consensus 190 ~~~I~I~G~----s~~~v~~A~~~I~~i~~~~~~~ 220 (509)
+|.|+|+.. ...+.+.|.+++..++.++...
T Consensus 67 ~G~ivv~~q~~RSQ~~Nr~~Al~rL~~~l~~a~~~ 101 (108)
T 2jva_A 67 DGVIVLKAQQYRTQEQNRADALLRLSELIVNAAKL 101 (108)
T ss_dssp TCEEEEEECCSSSHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCcEEEEECCcCCHHHHHHHHHHHHHHHHHHHccC
Confidence 355888772 3478899999999999997763
No 81
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=21.59 E-value=25 Score=34.54 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=19.3
Q ss_pred EEEEeccccc-cccccCCCchhHHHHH
Q 010498 150 SLSVEVGASV-IRFIKGKEGSTQKKFE 175 (509)
Q Consensus 150 ~~~v~Vp~~~-~~~IIGk~G~t~k~iE 175 (509)
...+.|.++- -+.|||++|+++|+|.
T Consensus 231 ~~~i~ve~~~~k~iiig~~g~~lk~i~ 257 (301)
T 1wf3_A 231 KAILYVERPSQKAIVIGEGGRKIKEIG 257 (301)
T ss_dssp EEEEEESSHHHHHHHHCGGGHHHHHHH
T ss_pred EEEEEEeeCCceEEEEeCCchHHHHHH
Confidence 3455666544 4689999999999873
No 82
>3i4s_A Histidine triad protein; hydrolase, phosphatase, HIT superfamily, PSI-2, NYSGXRC, STR genomics, protein structure initiative; 1.75A {Bradyrhizobium japonicum}
Probab=21.05 E-value=1.6e+02 Score=25.86 Aligned_cols=77 Identities=9% Similarity=0.037 Sum_probs=45.1
Q ss_pred cccCCHHHHHHHHHHHHHhHHhhhhhcCCCCeEEEEceeccC----------CCCCCCceEEEEeee-ccCChhHHHHHH
Q 010498 344 LKLWNKDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLM----------RGSKDKARILYAPVE-EIGDGDRLLHAC 412 (509)
Q Consensus 344 Lgl~dee~v~~a~~aL~~i~~~i~~~L~~~pf~L~l~GLg~F----------~~dp~~pRVLyagV~-~~~~~~~L~~L~ 412 (509)
|.++++++.......+..+...+.+.+....+.+..-|-.+| .+|+.-|..+|.... ..-+.+.|.+++
T Consensus 52 l~dL~~e~~~~l~~~~~~va~~l~~~~~~~g~N~~~aGq~V~HlH~HvIPR~~~D~~~p~pvw~~~~~~~~~~eel~~~a 131 (149)
T 3i4s_A 52 IIDLDEVQQAQLMTEISRVSRALKEITKCDKLNIAALGNLVPQLHVHIIARRTGDAAWPRPVWGVMQPLAHDATEVQNFI 131 (149)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEECCSSCCSCCEEEEEECTTSTTTTSCCTTTSCCCCCCHHHHHHHH
T ss_pred hhHCCHHHHHHHHHHHHHHHHHHHHhcCCCeEEEeecCCcCCEEEEEEECCcCCCCCCCccccCCCcCCCCCHHHHHHHH
Confidence 445677777777777777766666554444455544443333 344555555664211 112357899999
Q ss_pred HHHHHHHH
Q 010498 413 QVIIDAFN 420 (509)
Q Consensus 413 ~~L~~~f~ 420 (509)
+.|++.|.
T Consensus 132 ~~Ir~~L~ 139 (149)
T 3i4s_A 132 SALRRKIW 139 (149)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHHh
Confidence 99987754
No 83
>3ups_A Iojap-like protein; PSI-biology, MCSG, midwest center for structural genomics, U function, structural genomics; HET: MSE; 1.75A {Zymomonas mobilis subsp}
Probab=20.92 E-value=1.6e+02 Score=25.90 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHhHHhhhhhcCCCCeEEEEceeccCCCCCCCceEEEEeeeccCChhHHHHHHHHHHHHHHHCCCcc
Q 010498 349 KDRVNAATNVLKSISSKVMDALDNRPLFIRLKGLDLMRGSKDKARILYAPVEEIGDGDRLLHACQVIIDAFNEAGLVF 426 (509)
Q Consensus 349 ee~v~~a~~aL~~i~~~i~~~L~~~pf~L~l~GLg~F~~dp~~pRVLyagV~~~~~~~~L~~L~~~L~~~f~~~Gl~~ 426 (509)
++-++.+.++|.+-+ ...-..|.++|+..+-+ |.-+....+...++.+++.|.+.+.+.|+.+
T Consensus 20 ~~l~~~i~~al~dkK-------a~DI~vlDv~~~s~~~D--------yfVIatg~S~rqv~Aiad~v~~~lk~~g~~~ 82 (136)
T 3ups_A 20 EMLLKLVTDSLDDDQ-------ALEIATIPLAGKSSIAD--------YMVIASGRSSRQVTAMAQKLADRIKAATGYV 82 (136)
T ss_dssp HHHHHHHHHHHHHTT-------CEEEEEEECTTTCSSCS--------EEEEEECSSHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHcC-------CCCeEEEECCCCCcccC--------EEEEEEcCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 455666666776643 12345678889988876 3333333346789999999999999887754
Done!