BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010500
         (509 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1O61|A Chain A, Crystal Structure Of A Plp-Dependent Enzyme With Plp
 pdb|1O61|B Chain B, Crystal Structure Of A Plp-Dependent Enzyme With Plp
 pdb|1O62|A Chain A, Crystal Structure Of The Apo Form Of A Plp-Dependent
           Enzyme
 pdb|1O62|B Chain B, Crystal Structure Of The Apo Form Of A Plp-Dependent
           Enzyme
 pdb|1O69|A Chain A, Crystal Structure Of A Plp-Dependent Enzyme
 pdb|1O69|B Chain B, Crystal Structure Of A Plp-Dependent Enzyme
          Length = 394

 Score = 30.0 bits (66), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 26/97 (26%), Positives = 46/97 (47%), Gaps = 6/97 (6%)

Query: 47  IVKKFRKSSYKSQNDSKNELPLN-GSATVHPNARTVDLKSEKSIRVATFNAALFSMAPAV 105
            V +F +S  K  + S+N L LN  +A +H   R   +K +  +  ++F   + S+AP  
Sbjct: 33  FVNRFEQSV-KDYSKSENALALNSATAALHLALRVAGVKQDDIVLASSF-TFIASVAPIC 90

Query: 106 PKSEKPSNFDHE---NEDFNRINLRAKSVIDRPKSIL 139
               KP   D +   N D + + L  K    +PK+++
Sbjct: 91  YLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALI 127


>pdb|3TQE|A Chain A, Structure Of The Malonyl Coa-Acyl Carrier Protein
           Transacylase (Fabd) From Coxiella Burnetii
          Length = 316

 Score = 29.3 bits (64), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 346 DHGEAHILAGALNSLDETDYSSERWTDIVKYYEEMG 381
           DH EA+I+ GAL    +      RW + +KY EE G
Sbjct: 240 DHNEANIIRGAL---IKQLVRPVRWVETIKYIEEQG 272


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.129    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,788,975
Number of Sequences: 62578
Number of extensions: 603321
Number of successful extensions: 1072
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1063
Number of HSP's gapped (non-prelim): 18
length of query: 509
length of database: 14,973,337
effective HSP length: 103
effective length of query: 406
effective length of database: 8,527,803
effective search space: 3462288018
effective search space used: 3462288018
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)