BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010500
         (509 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P0AAW4|YBHP_SHIFL Uncharacterized protein YbhP OS=Shigella flexneri GN=ybhP PE=4 SV=1
          Length = 253

 Score = 42.7 bits (99), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 32/151 (21%)

Query: 232 EVLRELDADLLALQDVKAEEENSMKPL-------------------SDLAAALGMNYVFA 272
           + +R + AD++ LQ+V    E  + PL                   SD A   G N V+ 
Sbjct: 35  DAVRTVSADIVCLQEVMGAHE--VHPLHVENWPDTSHYEFLADTMWSDFA--YGRNAVYP 90

Query: 273 ESWAPEYGNAVLSKWPIKRWKVQKI-FDDTDFRNVLKATVDVPQIGE-VNFHCTHLDHLD 330
           E     +GNAVLS++PI+ ++ + +  D  + R VL   +  P  G+ ++  C HL  L 
Sbjct: 91  EG---HHGNAVLSRYPIEHYENRDVSVDGAEKRGVLYCRIVPPMTGKAIHVMCVHLG-LR 146

Query: 331 ENWRMKQMNAI---IQSNDHGEAHILAGALN 358
           E  R  Q+  +   +     GE  ++AG  N
Sbjct: 147 EAHRQAQLAMLAEWVNELPDGEPVLVAGDFN 177


>sp|P0AAW1|YBHP_ECOLI Uncharacterized protein YbhP OS=Escherichia coli (strain K12)
           GN=ybhP PE=4 SV=1
          Length = 253

 Score = 42.7 bits (99), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 32/151 (21%)

Query: 232 EVLRELDADLLALQDVKAEEENSMKPL-------------------SDLAAALGMNYVFA 272
           + +R + AD++ LQ+V    E  + PL                   SD A   G N V+ 
Sbjct: 35  DAVRTVSADIVCLQEVMGAHE--VHPLHVENWPDTSHYEFLADTMWSDFA--YGRNAVYP 90

Query: 273 ESWAPEYGNAVLSKWPIKRWKVQKI-FDDTDFRNVLKATVDVPQIGE-VNFHCTHLDHLD 330
           E     +GNAVLS++PI+ ++ + +  D  + R VL   +  P  G+ ++  C HL  L 
Sbjct: 91  EG---HHGNAVLSRYPIEHYENRDVSVDGAEKRGVLYCRIVPPMTGKAIHVMCVHLG-LR 146

Query: 331 ENWRMKQMNAI---IQSNDHGEAHILAGALN 358
           E  R  Q+  +   +     GE  ++AG  N
Sbjct: 147 EAHRQAQLAMLAEWVNELPDGEPVLVAGDFN 177


>sp|P0AAW2|YBHP_ECOL6 Uncharacterized protein YbhP OS=Escherichia coli O6:H1 (strain
           CFT073 / ATCC 700928 / UPEC) GN=ybhP PE=4 SV=1
          Length = 253

 Score = 42.7 bits (99), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 32/151 (21%)

Query: 232 EVLRELDADLLALQDVKAEEENSMKPL-------------------SDLAAALGMNYVFA 272
           + +R + AD++ LQ+V    E  + PL                   SD A   G N V+ 
Sbjct: 35  DAVRTVSADIVCLQEVMGAHE--VHPLHVENWPDTSHYEFLADTMWSDFA--YGRNAVYP 90

Query: 273 ESWAPEYGNAVLSKWPIKRWKVQKI-FDDTDFRNVLKATVDVPQIGE-VNFHCTHLDHLD 330
           E     +GNAVLS++PI+ ++ + +  D  + R VL   +  P  G+ ++  C HL  L 
Sbjct: 91  EG---HHGNAVLSRYPIEHYENRDVSVDGAEKRGVLYCRIVPPMTGKAIHVMCVHLG-LR 146

Query: 331 ENWRMKQMNAI---IQSNDHGEAHILAGALN 358
           E  R  Q+  +   +     GE  ++AG  N
Sbjct: 147 EAHRQAQLAMLAEWVNELPDGEPVLVAGDFN 177


>sp|P0AAW3|YBHP_ECO57 Uncharacterized protein YbhP OS=Escherichia coli O157:H7 GN=ybhP
           PE=4 SV=1
          Length = 253

 Score = 42.7 bits (99), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 68/151 (45%), Gaps = 32/151 (21%)

Query: 232 EVLRELDADLLALQDVKAEEENSMKPL-------------------SDLAAALGMNYVFA 272
           + +R + AD++ LQ+V    E  + PL                   SD A   G N V+ 
Sbjct: 35  DAVRTVSADIVCLQEVMGAHE--VHPLHVENWPDTSHYEFLADTMWSDFA--YGRNAVYP 90

Query: 273 ESWAPEYGNAVLSKWPIKRWKVQKI-FDDTDFRNVLKATVDVPQIGE-VNFHCTHLDHLD 330
           E     +GNAVLS++PI+ ++ + +  D  + R VL   +  P  G+ ++  C HL  L 
Sbjct: 91  EG---HHGNAVLSRYPIEHYENRDVSVDGAEKRGVLYCRIVPPMTGKAIHVMCVHLG-LR 146

Query: 331 ENWRMKQMNAI---IQSNDHGEAHILAGALN 358
           E  R  Q+  +   +     GE  ++AG  N
Sbjct: 147 EAHRQAQLAMLAEWVNELPDGEPVLVAGDFN 177


>sp|Q86IV4|Y4775_DICDI PH domain-containing protein DDB_G0274775 OS=Dictyostelium
           discoideum GN=DDB_G0274775 PE=4 SV=1
          Length = 458

 Score = 32.3 bits (72), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 6/69 (8%)

Query: 206 GKAPLKSSVSFPTSSIASVGSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAAL 265
           G AP KSS+S P S I+   + ++++  LRE ++ +L    + +E   S+ P SDL +  
Sbjct: 142 GSAPEKSSLSSPRSKIS---NAKSIIPFLREEESKVLEFWQIWSE---SIPPQSDLQSGT 195

Query: 266 GMNYVFAES 274
            + +  A S
Sbjct: 196 AIEFHVATS 204


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.129    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 184,241,354
Number of Sequences: 539616
Number of extensions: 7598171
Number of successful extensions: 16536
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 16526
Number of HSP's gapped (non-prelim): 38
length of query: 509
length of database: 191,569,459
effective HSP length: 122
effective length of query: 387
effective length of database: 125,736,307
effective search space: 48659950809
effective search space used: 48659950809
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)