Query 010500
Match_columns 509
No_of_seqs 254 out of 1620
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 08:08:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010500.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010500hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3teb_A Endonuclease/exonucleas 100.0 2.6E-28 8.8E-33 237.4 17.1 218 223-468 19-266 (266)
2 3l1w_A Uncharacterized protein 100.0 3.4E-27 1.2E-31 229.7 22.4 208 225-470 22-253 (257)
3 4fva_A 5'-tyrosyl-DNA phosphod 100.0 2.3E-27 7.9E-32 227.9 20.6 206 224-467 30-255 (256)
4 4gew_A 5'-tyrosyl-DNA phosphod 100.0 3.6E-27 1.2E-31 244.9 21.9 216 214-467 123-361 (362)
5 3g6s_A Putative endonuclease/e 99.9 4E-26 1.4E-30 223.7 22.7 210 224-470 24-262 (267)
6 4gz1_A Tyrosyl-DNA phosphodies 99.9 2.6E-26 8.9E-31 220.1 20.3 212 224-468 26-254 (256)
7 4f1h_A Tyrosyl-DNA phosphodies 99.9 2.5E-26 8.5E-31 216.8 18.4 213 224-467 20-249 (250)
8 3mpr_A Putative endonuclease/e 99.9 2.2E-25 7.5E-30 223.5 21.9 209 224-470 29-291 (298)
9 1ako_A Exonuclease III; AP-end 99.9 3.6E-26 1.2E-30 222.5 13.3 230 224-467 12-267 (268)
10 2jc4_A Exodeoxyribonuclease II 99.9 4.4E-25 1.5E-29 213.3 16.7 225 224-468 12-256 (256)
11 1zwx_A SMCL, sphingomyelinase- 99.9 4.2E-26 1.4E-30 227.0 9.5 215 224-468 32-300 (301)
12 2voa_A AF_EXO, XTHA, exodeoxyr 99.9 4.6E-24 1.6E-28 207.0 19.3 226 225-468 14-257 (257)
13 1vyb_A ORF2 contains A reverse 99.9 8.7E-24 3E-28 201.7 19.4 222 215-467 12-238 (238)
14 2jc5_A Exodeoxyribonuclease; h 99.9 1.9E-24 6.3E-29 209.3 12.7 223 229-470 19-258 (259)
15 2j63_A AP-endonuclease; base e 99.9 1.1E-23 3.7E-28 225.8 17.2 230 228-469 169-467 (467)
16 3g91_A MTH0212, exodeoxyribonu 99.9 1.3E-23 4.5E-28 206.1 15.1 224 229-470 21-259 (265)
17 2ddr_A Sphingomyelin phosphodi 99.9 3.4E-23 1.2E-27 206.2 18.3 136 225-362 32-201 (306)
18 1hd7_A DNA-(apurinic or apyrim 99.9 1.8E-23 6.1E-28 211.9 13.8 222 230-468 80-318 (318)
19 2o3h_A DNA-(apurinic or apyrim 99.9 4.5E-23 1.5E-27 203.9 13.9 222 230-468 47-285 (285)
20 3i41_A Beta-hemolysin; beta to 99.9 9E-23 3.1E-27 207.1 12.6 139 224-364 51-222 (317)
21 1wdu_A TRAS1 ORF2P; four-layer 99.9 2.4E-21 8.1E-26 188.1 18.6 214 219-469 26-244 (245)
22 4b8c_D Glucose-repressible alc 99.8 3.8E-22 1.3E-26 224.4 1.7 224 224-470 424-719 (727)
23 3ngq_A CCR4-NOT transcription 99.8 2E-19 6.8E-24 189.0 15.8 139 224-364 61-261 (398)
24 2ei9_A Non-LTR retrotransposon 99.8 8.7E-19 3E-23 171.7 16.4 198 224-470 19-221 (240)
25 2f1n_A CDT B, cytolethal diste 99.8 2.7E-19 9.3E-24 175.9 7.7 192 228-465 36-260 (262)
26 2imq_X Salivary nitrophorin; f 99.7 1.6E-17 5.6E-22 166.6 14.3 248 215-469 13-281 (282)
27 1sr4_B CDT B, cytolethal diste 99.7 1.8E-17 6E-22 164.2 13.0 128 229-362 26-183 (261)
28 2a40_B Deoxyribonuclease-1; WA 99.7 4.4E-17 1.5E-21 159.9 15.6 201 229-466 20-259 (260)
29 1i9z_A Synaptojanin, phosphati 99.6 2.5E-14 8.5E-19 147.7 24.1 231 230-470 43-317 (347)
30 2xsw_A 72 kDa inositol polypho 99.6 3.1E-14 1.1E-18 147.5 22.0 225 236-470 55-322 (357)
31 3mtc_A Type II inositol-1,4,5- 99.3 2.6E-10 9E-15 115.7 22.7 234 229-470 25-303 (313)
32 4a9c_A Phosphatidylinositol-3, 99.3 8E-10 2.7E-14 112.4 23.3 228 237-470 46-313 (316)
No 1
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.96 E-value=2.6e-28 Score=237.41 Aligned_cols=218 Identities=17% Similarity=0.179 Sum_probs=155.1
Q ss_pred CcccHHHHHHHHHccCCcEEEEcCccCCcccC-------CC-----hHHHHHHHh--CCcEEEec---c-CCCCceeEEE
Q 010500 223 SVGSTRTVLEVLRELDADLLALQDVKAEEENS-------MK-----PLSDLAAAL--GMNYVFAE---S-WAPEYGNAVL 284 (509)
Q Consensus 223 ~~~r~~~I~e~I~e~dpDVI~LQEV~~~~~~~-------~~-----~l~~La~~l--G~~~~f~~---s-~~g~~GvAIL 284 (509)
...++++|+++|++.+|||||||||....... .+ ..+.|++.. +|.+.+.. . ..+.+|++||
T Consensus 19 ~~~~~~~i~~~i~~~~~DIi~LQEv~~~~~~~~~~~~~~~d~~~~~~~~~l~~~~~~~y~~~~~~~~~~~~~~~~g~ail 98 (266)
T 3teb_A 19 QMEKIDILARTIAEKQYDVIAMQEVNQLMNNKIIFDDIREENYAWVLLETLQKYTDTDYYLHWSNSHIGFGKYNEGVAVI 98 (266)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEEEEEEETTSCEEETTEETTCHHHHHHHHHTTTCCSCCEEEEEEEEECSTTEEEEEEEE
T ss_pred hhHHHHHHHHHHHhcCCCEEEEEEccccccccccccccccccHHHHHHHHHHHhCCCCeEEEEeccccCccccCCeEEEE
Confidence 35678999999999999999999996443210 01 234555433 25443221 1 2345799999
Q ss_pred EeccceeeeEeeecC-----CCCCceEEEEEEEeCCccEEEEEEecCCCC--ChHHHHHHHHHHHHHcCCCCcEEEEecC
Q 010500 285 SKWPIKRWKVQKIFD-----DTDFRNVLKATVDVPQIGEVNFHCTHLDHL--DENWRMKQMNAIIQSNDHGEAHILAGAL 357 (509)
Q Consensus 285 SR~PI~~~~~~~l~~-----~~~~R~~L~a~l~~~g~~~L~VintHL~~~--~~~~R~~Q~~~L~~~L~~~~PvIL~GDF 357 (509)
||+|+.....+.++. +.+.|.++.+.+.+++ ..+.|+++|+++. ....|..|++.|++++....|+||||||
T Consensus 99 sr~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~-~~~~v~~~Hl~~~~~~~~~r~~q~~~l~~~~~~~~~~il~GDf 177 (266)
T 3teb_A 99 TRHKIKAEDEFYCTFAQSVRTISARRIVSITINYEG-QDIEFYSCHMNLPNCETEDMGKNIQTILNRTQNSNLKILMGDF 177 (266)
T ss_dssp ESSCCSEEEEEECSSCCCTTCTTCCEEEEEEEEETT-EEEEEEEEECCCTTCTTCCHHHHHHHHHTSSCSCCEEEEEEEC
T ss_pred ECceecCceeEEeCCCCCCCCcccceEEEEEEEeCC-eEEEEEEecCCCccCChHHHHHHHHHHHHHHhcCCcEEEEeEC
Confidence 999998888777764 2457899999999987 9999999999874 4567899999999999767899999999
Q ss_pred CCCCCCCCcchhhhhHHHhhhhcCCCChhHHHHHHHhhCCceecccccCCC-cceeEecCCccccCCCCCCCceEEEEeC
Q 010500 358 NSLDETDYSSERWTDIVKYYEEMGKPTPKVEVMKFLKSKQYTDSKDFAGEC-ESVVMIAKGQSVQGTCKYGTRVDYILAS 436 (509)
Q Consensus 358 Ns~p~s~~~~~~~~~i~~~~~~~G~~~~~~~~~~~L~~~glvDa~~~~~~~-~~tT~~~~g~~~~~t~~~~~RIDyIf~S 436 (509)
|+.+... ...++.|.+.+|.|+|...++. ..+||.... ...+......||||||++
T Consensus 178 N~~~~~~----------------------~~~~~~l~~~~l~d~~~~~~~~~~~~t~~~~~-~~~~~~~~~~riD~i~~s 234 (266)
T 3teb_A 178 NTDAIGN----------------------VAAYENILSQGLFDTYVMAEKKDDGITVDKSI-HGWDNDKAKKRLDYIFSN 234 (266)
T ss_dssp CCCTTTC----------------------HHHHHHHHTTTCEEHHHHCSEECCCCCEECC-------CTTEECCEEEEES
T ss_pred CCCCCCC----------------------CcHHHhhccccccchHHhhccccCCccccCcc-CCcCcCCcCCeeEEEEeC
Confidence 9987321 1234455567899999877643 234553211 111122356899999999
Q ss_pred CCCCCceeeeEEEEcCC----CCCCCccceEEEEEe
Q 010500 437 PNSPYKFVPGSYSVFSS----KGTSDHHIVKVDITK 468 (509)
Q Consensus 437 ~~~~~kl~v~s~~Vi~~----~~~SDH~PV~adf~L 468 (509)
+. +.+..+.++.. ..+|||+||+++|.+
T Consensus 235 ~~----~~~~~~~v~~~~~~~~~~SDH~Pv~~~l~l 266 (266)
T 3teb_A 235 KE----LKVKESKVIFNNKNKEIVSDHFGIEVKIEF 266 (266)
T ss_dssp SC----CCEEEEEEESSSSSSCCCSSSCEEEEEECC
T ss_pred CC----eEEEEEEEEeCCCCCCCcCCccCEEEEEEC
Confidence 87 56778888753 357999999999964
No 2
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.95 E-value=3.4e-27 Score=229.70 Aligned_cols=208 Identities=18% Similarity=0.170 Sum_probs=154.9
Q ss_pred ccHHHHHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHhCCcEEEeccC--CCCceeEEEEe---ccceeeeEeeecC
Q 010500 225 GSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAESW--APEYGNAVLSK---WPIKRWKVQKIFD 299 (509)
Q Consensus 225 ~r~~~I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~lG~~~~f~~s~--~g~~GvAILSR---~PI~~~~~~~l~~ 299 (509)
.+.+.|+++|++++|||||||||... ++..|.+.+||.++..... .+.+|++||+| +|+.....+.++.
T Consensus 22 ~r~~~i~~~i~~~~~DIv~LQEv~~~------~~~~l~~~l~y~~~~~~~~~~~~~~g~ail~r~~~~~~~~~~~~~l~~ 95 (257)
T 3l1w_A 22 FRKEAVCQLINFHDWSLCCIQEVRPN------QVRDLKAYTTFTCLSAEREGDGQGEGLAILYNEQKVQAIDTGYFWLSE 95 (257)
T ss_dssp HHHHHHHHHHHHHCCSEEEEEEECHH------HHHHHHHHSSSEEEEEESSSSSCSCEEEEEECTTTEEEEEEEEEESSS
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCHH------HHHHHHhcCCCcEEEecccCCCCCceEEEEEEcceEEEEecCeEECcC
Confidence 46789999999999999999999743 4566777788876543322 36789999998 8888887776642
Q ss_pred -----C-----CCCceEEEEEEEeCC-ccEEEEEEecCCCCChHHHHHHHHHHHHHcC---CCCcEEEEecCCCCCCCCC
Q 010500 300 -----D-----TDFRNVLKATVDVPQ-IGEVNFHCTHLDHLDENWRMKQMNAIIQSND---HGEAHILAGALNSLDETDY 365 (509)
Q Consensus 300 -----~-----~~~R~~L~a~l~~~g-~~~L~VintHL~~~~~~~R~~Q~~~L~~~L~---~~~PvIL~GDFNs~p~s~~ 365 (509)
+ ...|.++.+.++.+. +..+.|+|+||++.....|..|++.|.+++. ...|+|||||||+.+.+.
T Consensus 96 ~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~r~~q~~~l~~~i~~~~~~~pvil~GDfN~~~~~~- 174 (257)
T 3l1w_A 96 TPQQPSIHPEAGCPRIALWGLFKETTQNTPFLVINVHLDHISAHARLAGMTVILEELHDKIAQYPTLLMGDFNAESGEE- 174 (257)
T ss_dssp STTSSCCCTTCSSCCEEEEEEEEETTCSSCEEEEEEECCSSCHHHHHHHHHHHHHHTHHHHHHSCEEEEEECCCCTTSH-
T ss_pred CCCcccccccccccceeEEEEEEEcCCCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHHcCCCCEEEEeeCCCCCCcH-
Confidence 1 357999999999863 5899999999998777889999999998875 223999999999987753
Q ss_pred cchhhhhHHHhhhhcCCCChhHHHHHHHhhCCceecccccCC-CcceeEecCCccccCCCCCCCceEEEEeCCCCCCcee
Q 010500 366 SSERWTDIVKYYEEMGKPTPKVEVMKFLKSKQYTDSKDFAGE-CESVVMIAKGQSVQGTCKYGTRVDYILASPNSPYKFV 444 (509)
Q Consensus 366 ~~~~~~~i~~~~~~~G~~~~~~~~~~~L~~~glvDa~~~~~~-~~~tT~~~~g~~~~~t~~~~~RIDyIf~S~~~~~kl~ 444 (509)
.++.+ ..+|.|+|...+. ....||+..... .....+.||||||+ +. +.
T Consensus 175 -----------------------~~~~l-~~~l~d~~~~~~~~~~~~t~~~~~~~--~~~~~~~riD~i~~-~~----~~ 223 (257)
T 3l1w_A 175 -----------------------VHQLV-QKKFQDSKNLATHYGPRGTFQNFTYT--KPWAELEEIDYIYV-KG----WQ 223 (257)
T ss_dssp -----------------------HHHHH-TTTCEEGGGTSEEESCSCCBCTTCTT--CCGGGCBCCEEEEE-ES----EE
T ss_pred -----------------------HHHHh-hhhccchhhhhcccCCCCcccCCccc--CCCCCCCceeEEEE-CC----cE
Confidence 33444 3489999986643 223455322110 00112489999999 55 78
Q ss_pred eeEEEEcCCC----CCCCccceEEEEEecC
Q 010500 445 PGSYSVFSSK----GTSDHHIVKVDITKAQ 470 (509)
Q Consensus 445 v~s~~Vi~~~----~~SDH~PV~adf~L~~ 470 (509)
+..+.++... .+|||+||+++|.+.+
T Consensus 224 ~~~~~v~~~~~~~~~~SDH~pv~~~l~~~~ 253 (257)
T 3l1w_A 224 VQQTASLTDSIDGRFPSDHFPLEAEVAGEN 253 (257)
T ss_dssp EEEEEECCCCBTTBCSSSBCCEEEEEEEC-
T ss_pred EEEEEEeccCcCCcccCCcceEEEEEEEEe
Confidence 8888887642 5899999999999875
No 3
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.95 E-value=2.3e-27 Score=227.85 Aligned_cols=206 Identities=17% Similarity=0.157 Sum_probs=147.2
Q ss_pred cccHHHHHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHhCCcEEEeccCCCCceeEEEEeccceeeeEe--eecCCC
Q 010500 224 VGSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRWKVQ--KIFDDT 301 (509)
Q Consensus 224 ~~r~~~I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~lG~~~~f~~s~~g~~GvAILSR~PI~~~~~~--~l~~~~ 301 (509)
..+.+.|+++|++++|||||||||... ++..|.+.+++++.+.....+.+|++|+++.++...... .++...
T Consensus 30 ~~r~~~i~~~i~~~~pDIi~LQEv~~~------~~~~l~~~~~~~~~~~~~~~~~~g~~il~~~~~~~~~~~~~~~~~~~ 103 (256)
T 4fva_A 30 LTRMKAVAHIVKNVNPDILFLQEVVDR------DLAPIDKLQSLYKIYYSNKGCQYYTAILVSKMFDVEKHDVIHFQNSG 103 (256)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEECST------TCHHHHGGGGTEEEEESSTTSSSEEEEEEETTCEEEEEEEEECTTCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecChh------HhHHHHHhcCCceEeecCCCCCcceEEEEeecccceecccccCCCCc
Confidence 456788999999999999999999644 234566666666666655667889999999776654443 334445
Q ss_pred CCceEEEEEEEeCCccEEEEEEecCCCC--ChHHHHHHHHHHHHHc------CCCCcEEEEecCCCCCCCCCcchhhhhH
Q 010500 302 DFRNVLKATVDVPQIGEVNFHCTHLDHL--DENWRMKQMNAIIQSN------DHGEAHILAGALNSLDETDYSSERWTDI 373 (509)
Q Consensus 302 ~~R~~L~a~l~~~g~~~L~VintHL~~~--~~~~R~~Q~~~L~~~L------~~~~PvIL~GDFNs~p~s~~~~~~~~~i 373 (509)
..+.++.+.+.+++ ..+.|+|+||.+. ....|..|++.+.+.+ ..+.|+|+|||||..+.+..
T Consensus 104 ~~~~~~~~~~~~~g-~~~~v~~~Hl~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~vIl~GDfN~~~~~~~-------- 174 (256)
T 4fva_A 104 MYRTLQILEGSIGG-LKVFLLNTHLESTREHRPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLRDEEVS-------- 174 (256)
T ss_dssp SCCEEEEEEEEETT-EEEEEEEEECCCSGGGHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEECCCCGGGCC--------
T ss_pred ccceeEEEEEEeCC-eEEEEEEecCCCCCcchHHHHHHHHHHHHHhhhhhhccCCCcEEEeccCCCCcchhh--------
Confidence 56778889999987 8999999999863 3456677777766543 36789999999998765431
Q ss_pred HHhhhhcCCCChhHHHHHHHhhCCceecccccCCCc--ceeEecC-CccccCCCCCCCceEEEEeCCCCCCceeeeEEEE
Q 010500 374 VKYYEEMGKPTPKVEVMKFLKSKQYTDSKDFAGECE--SVVMIAK-GQSVQGTCKYGTRVDYILASPNSPYKFVPGSYSV 450 (509)
Q Consensus 374 ~~~~~~~G~~~~~~~~~~~L~~~glvDa~~~~~~~~--~tT~~~~-g~~~~~t~~~~~RIDyIf~S~~~~~kl~v~s~~V 450 (509)
....++.|+|...+... .+||... +........+..||||||+++. +.+..+++
T Consensus 175 -------------------~~~~~~~d~~~~~~~~~~~~~T~~~~~~~~~~~~~~~~~RiD~I~~~~~----~~~~~~~~ 231 (256)
T 4fva_A 175 -------------------RVPDGVKDAWEAAGSDNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSGP----LDKVKFTL 231 (256)
T ss_dssp -------------------CCCTTCEEHHHHTTCCGGGCCSEETTTCCSSCSCCSCEECCEEEEEESS----CCEEEEEE
T ss_pred -------------------hhhcchhhHHHHhCCCCCCCcccccccCcccccCCCCCcCeEEEEEcCC----ceeeEEEE
Confidence 01357899998776543 3566532 2222223344679999999987 56667776
Q ss_pred cCC-------CCCCCccceEEEEE
Q 010500 451 FSS-------KGTSDHHIVKVDIT 467 (509)
Q Consensus 451 i~~-------~~~SDH~PV~adf~ 467 (509)
+.. ..+|||+||+|+|+
T Consensus 232 ~~~~~~~~~~~~~SDH~pv~a~Fs 255 (256)
T 4fva_A 232 EGRQRIRSCLCFPSDHWAINATFF 255 (256)
T ss_dssp ECCSCCTTTCSCSCSSCEEEEEEE
T ss_pred EeeEecCCCCCCcCcccCEEEEEc
Confidence 532 24799999999996
No 4
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.95 E-value=3.6e-27 Score=244.89 Aligned_cols=216 Identities=18% Similarity=0.172 Sum_probs=154.2
Q ss_pred eeeecCCCCC---cccHHHHHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHhCCcEEEeccCCCCceeEEEEeccce
Q 010500 214 VSFPTSSIAS---VGSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIK 290 (509)
Q Consensus 214 v~~~~~~~~~---~~r~~~I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~lG~~~~f~~s~~g~~GvAILSR~PI~ 290 (509)
++||.++.++ ..+...|+++|++++|||||||||... ++..|...++++.+|.....+.+|+|||+|.|+.
T Consensus 123 lSWNI~Gl~~~~~~~R~~~I~~~I~~~~PDIV~LQEv~~~------~~~~l~~~~~~y~~~~~~~~~~~G~aIlsk~~i~ 196 (362)
T 4gew_A 123 MSWNIDGLDGRSLLTRMKAVAHIVKNVNPDILFLQEVVDR------DLAPIDKLQSLYKIYYSNKGCQYYTAILVSKMFD 196 (362)
T ss_dssp EEEECCTTCCTTHHHHHHHHHHHHHHHCCSEEEEEEECST------TCHHHHGGGGTEEEEESSTTSSSEEEEEEETTEE
T ss_pred EEEEeCCCCCcCHHHHHHHHHHHHHHcCCCEEEEEcCChh------HhHHHHHhcCCceEEeCCCCCCceEEEEEeccCc
Confidence 5677765543 345678999999999999999999643 2345655555555555555678899999998876
Q ss_pred eeeEeee--cCCCCCceEEEEEEEeCCccEEEEEEecCCCC--ChHHHHHHHHHHHHHc------CCCCcEEEEecCCCC
Q 010500 291 RWKVQKI--FDDTDFRNVLKATVDVPQIGEVNFHCTHLDHL--DENWRMKQMNAIIQSN------DHGEAHILAGALNSL 360 (509)
Q Consensus 291 ~~~~~~l--~~~~~~R~~L~a~l~~~g~~~L~VintHL~~~--~~~~R~~Q~~~L~~~L------~~~~PvIL~GDFNs~ 360 (509)
......+ +.....|.++.+.+.++| ..|.|+|+||++. ....|..|+..+.+.+ ..+.|+|||||||..
T Consensus 197 ~~~~~~~~~~~~~~~r~~l~~~i~~~g-~~l~v~ntHL~s~~~~~~~R~~Q~~~l~~~~~~~~~~~~~~pvIl~GDFN~~ 275 (362)
T 4gew_A 197 VEKHDVIHFQNSGMYRTLQILEGSIGG-LKVFLLNTHLESTREHRPQRCAQFGFCMDKVREIIAQNPGALVFFGGDLNLR 275 (362)
T ss_dssp EEEEEEEECTTCSSCCEEEEEEEEETT-EEEEEEEEECCCSGGGHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEEECCCC
T ss_pred cccccccCCCCCcccceEEEEEEEECC-EEEEEEEecCCccccchhHHHHHHHHHHHHhHhhhhcCCCCCeEEeecCCCC
Confidence 5544333 344567889999999987 8999999999863 3456888888877654 356899999999987
Q ss_pred CCCCCcchhhhhHHHhhhhcCCCChhHHHHHHHhhCCceecccccCCCc--ceeEe-cCCccccCCCCCCCceEEEEeCC
Q 010500 361 DETDYSSERWTDIVKYYEEMGKPTPKVEVMKFLKSKQYTDSKDFAGECE--SVVMI-AKGQSVQGTCKYGTRVDYILASP 437 (509)
Q Consensus 361 p~s~~~~~~~~~i~~~~~~~G~~~~~~~~~~~L~~~glvDa~~~~~~~~--~tT~~-~~g~~~~~t~~~~~RIDyIf~S~ 437 (509)
+.+.. ....+|.|+|+..+... .+||. ..+........+..||||||+++
T Consensus 276 p~~~~---------------------------~~~~gl~Da~~~~~~~~~~~~Tw~~~~n~~~~~~~~~~~RIDyIf~s~ 328 (362)
T 4gew_A 276 DEEVS---------------------------RVPDGVKDAWEAAGSDNKTKFTWDTFKNDNKQGFHGAKMRFDRLYWSG 328 (362)
T ss_dssp GGGCC---------------------------CCCTTCEEHHHHTTCCGGGCCSEETTTCTTSCCSSCCEECCEEEEEES
T ss_pred Ccccc---------------------------hhcchHHHHHHHhCCCCCCCcCcccccCcccccCCCCCcceEEEEEcC
Confidence 76431 01358999998876543 35664 33322222334567999999998
Q ss_pred CCCCceeeeEEEEcCC-------CCCCCccceEEEEE
Q 010500 438 NSPYKFVPGSYSVFSS-------KGTSDHHIVKVDIT 467 (509)
Q Consensus 438 ~~~~kl~v~s~~Vi~~-------~~~SDH~PV~adf~ 467 (509)
. +.+..+.++.. .++|||+||+|+|+
T Consensus 329 ~----l~~~~~~vi~~~ri~~~~~~pSDH~pV~A~FS 361 (362)
T 4gew_A 329 P----LDKVKFTLEGRQRIRSCLCFPSDHWAINATFF 361 (362)
T ss_dssp S----CCEEEEEEECCSCCTTTSSCSCSSCEEEEEEE
T ss_pred C----cceeEEEEEeeeecCCCCCCCCcccCEEEEEc
Confidence 7 56667776532 24799999999996
No 5
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.94 E-value=4e-26 Score=223.70 Aligned_cols=210 Identities=16% Similarity=0.171 Sum_probs=154.7
Q ss_pred cccHHHHHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHh-CCcEEEeccC---CCCceeEEE---EeccceeeeEee
Q 010500 224 VGSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAAL-GMNYVFAESW---APEYGNAVL---SKWPIKRWKVQK 296 (509)
Q Consensus 224 ~~r~~~I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~l-G~~~~f~~s~---~g~~GvAIL---SR~PI~~~~~~~ 296 (509)
..+.+.|+++|++++|||||||||... ++..|...+ +|.+++.... ....+++|| +|+|+.....+.
T Consensus 24 ~~r~~~i~~~i~~~~~DIv~LQEv~~~------~~~~l~~~l~~y~~~~~~~~~~~~~g~~~ail~~~s~~~~~~~~~~~ 97 (267)
T 3g6s_A 24 QYRKDRVCQFIKDHELDIVGMQEVLHN------QFQDLRAGLPEYDGIGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTFW 97 (267)
T ss_dssp GGTHHHHHHHHHHTTCSEEEEESBCHH------HHHHHHHHCTTEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCHH------HHHHHHHhccCCcEEEecCCCCCcCCceeEEEEEccceEEEecccEe
Confidence 468899999999999999999999743 456677665 5544321111 133459999 889999887776
Q ss_pred ecCC-----------CCCceEEEEEEEeC-CccEEEEEEecCCCCChHHHHHHHHHHHHHcC---CCCcEEEEecCCCCC
Q 010500 297 IFDD-----------TDFRNVLKATVDVP-QIGEVNFHCTHLDHLDENWRMKQMNAIIQSND---HGEAHILAGALNSLD 361 (509)
Q Consensus 297 l~~~-----------~~~R~~L~a~l~~~-g~~~L~VintHL~~~~~~~R~~Q~~~L~~~L~---~~~PvIL~GDFNs~p 361 (509)
++.. ...|.++.+.++.. ++..+.|+++||++.....|..|++.|.+++. .+.|+|||||||+.+
T Consensus 98 l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~R~~q~~~l~~~l~~~~~~~pvIl~GDfN~~~ 177 (267)
T 3g6s_A 98 LAENPDSVGMMGWDAVCVRIATWAKFKDKATGKIFMAVNTHFDHVGEEARRQSALLIIRKIKEIVGERPAVVTGDFNVTD 177 (267)
T ss_dssp SSSCTTSTTCCCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSCHHHHHHHHHHHHHHHHHHTTTSCEEEEEECSSCT
T ss_pred cCCCCCccccccccccCcceEEEEEEEEcCCCCEEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEeECCCCC
Confidence 6421 24788999999963 35899999999998778889999999888774 478999999999987
Q ss_pred CCCCcchhhhhHHHhhhhcCCCChhHHHHHHHhhCC--ceecccccCCC--cceeEecCCccccCCCCCCCceEEEEeCC
Q 010500 362 ETDYSSERWTDIVKYYEEMGKPTPKVEVMKFLKSKQ--YTDSKDFAGEC--ESVVMIAKGQSVQGTCKYGTRVDYILASP 437 (509)
Q Consensus 362 ~s~~~~~~~~~i~~~~~~~G~~~~~~~~~~~L~~~g--lvDa~~~~~~~--~~tT~~~~g~~~~~t~~~~~RIDyIf~S~ 437 (509)
.+. .++.|...+ |.|+|...+.. ...||+..+.. ......||||||+++
T Consensus 178 ~~~------------------------~~~~l~~~~~~l~d~~~~~~~~~~~~~T~~~~~~~---~~~~~~riD~I~~s~ 230 (267)
T 3g6s_A 178 ASD------------------------AYETITTNEFVMKDAYKTAARVTGVDYTFHDFARI---PAEDCEKIDFIFVTP 230 (267)
T ss_dssp TSH------------------------HHHHHHSSSSCCEEHHHHCSEEEECSCSBCTTTTS---CGGGCCCCEEEEECT
T ss_pred CCH------------------------HHHHhhcCCcchhhhHhhhccccCCCCCEeCCCCC---CCCCCCcEeEEEeCC
Confidence 753 344555554 99999876532 23455432210 012458999999998
Q ss_pred CCCCceeeeEEEEcCCC---CCCCccceEEEEEecC
Q 010500 438 NSPYKFVPGSYSVFSSK---GTSDHHIVKVDITKAQ 470 (509)
Q Consensus 438 ~~~~kl~v~s~~Vi~~~---~~SDH~PV~adf~L~~ 470 (509)
. +.+..+.++... .+|||+||+|++.+..
T Consensus 231 ~----~~~~~~~v~~~~~~~~~SDH~PV~a~~~~~~ 262 (267)
T 3g6s_A 231 Q----VLVKSCEIPAEVPEALLSDHNPQLADLELEH 262 (267)
T ss_dssp T----SEEEEEEECCCCSSSCCCSBCCEEEEEEEC-
T ss_pred C----ceEEEEEEecCCCCCCCCCcccEEEEEEecc
Confidence 7 678899988764 4799999999998765
No 6
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.94 E-value=2.6e-26 Score=220.09 Aligned_cols=212 Identities=18% Similarity=0.197 Sum_probs=140.1
Q ss_pred cccHHHHHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHhCCcEEEeccCCCCceeEEEEeccceee-e--EeeecCC
Q 010500 224 VGSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRW-K--VQKIFDD 300 (509)
Q Consensus 224 ~~r~~~I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~lG~~~~f~~s~~g~~GvAILSR~PI~~~-~--~~~l~~~ 300 (509)
..+.+.|+++|++++|||||||||.. +++..|.+.++.++.+.... ...|.+++++.+.... . ....+..
T Consensus 26 ~~r~~~i~~~i~~~~pDIi~LQEv~~------~~~~~l~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~ 98 (256)
T 4gz1_A 26 PERARGVCSCLALYSPDVVFLQEVIP------PYCAYLKKRAASYTIITGNE-EGYFTAILLKKGRVKFKSQEIIPFPNT 98 (256)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEECH------HHHHHHHHHCTTEEEEESCS-SSSEEEEEEETTTEEEEEEEEEECTTC
T ss_pred HHHHHHHHHHHHHcCCCEEEEEcCCH------HHHHHHHhhccccceeeccc-cCCceEEEEEeccccceecccccCCcc
Confidence 34678899999999999999999953 24566776666554444333 3445556665443322 2 2223333
Q ss_pred CCCceEEEEEEEeCCccEEEEEEecCCCC--ChHHHHHHHHHHHHHcC---CCCcEEEEecCCCCCCCCCcchhhhhHHH
Q 010500 301 TDFRNVLKATVDVPQIGEVNFHCTHLDHL--DENWRMKQMNAIIQSND---HGEAHILAGALNSLDETDYSSERWTDIVK 375 (509)
Q Consensus 301 ~~~R~~L~a~l~~~g~~~L~VintHL~~~--~~~~R~~Q~~~L~~~L~---~~~PvIL~GDFNs~p~s~~~~~~~~~i~~ 375 (509)
...+.++.+.+..++ ..+.|+|+||++. ....|..|+..+++.+. .+.|+|+|||||+.+.+.
T Consensus 99 ~~~~~~~~~~~~~~~-~~~~v~~~Hl~~~~~~~~~~~~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~~----------- 166 (256)
T 4gz1_A 99 KMMRNLLCVNVSLGG-NEFCLMTSHLESTREHSAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEV----------- 166 (256)
T ss_dssp SSCCEEEEEEEEETT-EEEEEEECBCCCSGGGHHHHHHHHHHHHHHHHHSCTTSEEEEEEECCCCHHHH-----------
T ss_pred cccceEEEEEEEeCC-EEEEEEeecccccccchhhhhHHHHHHhhhhhhccCcceEEEeCccCCCcchh-----------
Confidence 456778888898887 8999999999863 35678889998888773 567999999999865432
Q ss_pred hhhhcCCCChhHHHHHHHhhCCceecccccCCCc--ceeEecCC-ccccCCCCCCCceEEEEeCCCCCCceeeeEEEEcC
Q 010500 376 YYEEMGKPTPKVEVMKFLKSKQYTDSKDFAGECE--SVVMIAKG-QSVQGTCKYGTRVDYILASPNSPYKFVPGSYSVFS 452 (509)
Q Consensus 376 ~~~~~G~~~~~~~~~~~L~~~glvDa~~~~~~~~--~tT~~~~g-~~~~~t~~~~~RIDyIf~S~~~~~kl~v~s~~Vi~ 452 (509)
....+...++.|+|...+... .++|.... ........++.||||||+++... .+.+..++++.
T Consensus 167 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~-~~~~~~~~~~~ 232 (256)
T 4gz1_A 167 -------------IKCGGLPDNVFDAWEFLGKPKHCQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEG-HLIPQSLDLVG 232 (256)
T ss_dssp -------------HHHTCSCTTEEEHHHHTTCCGGGSCSEETTTCCTTCCSSCCEECCEEEEEECC-C-SEEEEEEEEEC
T ss_pred -------------hhhhhccchhhhHHHHhcCCCCCCcccccCCCCccccCCCCCccEEEEEEECCcc-ceeeeEEEEEe
Confidence 111223457788887766432 23443222 11112234568999999987632 25566666653
Q ss_pred C------CCCCCccceEEEEEe
Q 010500 453 S------KGTSDHHIVKVDITK 468 (509)
Q Consensus 453 ~------~~~SDH~PV~adf~L 468 (509)
. ..+|||+||+++|++
T Consensus 233 ~~~~~~~~~~SDH~pv~a~~~i 254 (256)
T 4gz1_A 233 LEKLDCGRFPSDHWGLLCTLNV 254 (256)
T ss_dssp CSCCTTSSCSCSBCEEEEEEEE
T ss_pred ccccCCCCCCCccccEEEEEEE
Confidence 2 247999999999987
No 7
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.94 E-value=2.5e-26 Score=216.84 Aligned_cols=213 Identities=18% Similarity=0.129 Sum_probs=145.5
Q ss_pred cccHHHHHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHhCCcEEEeccCCCCceeEEEEe--ccceeeeEeeecCCC
Q 010500 224 VGSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAESWAPEYGNAVLSK--WPIKRWKVQKIFDDT 301 (509)
Q Consensus 224 ~~r~~~I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~lG~~~~f~~s~~g~~GvAILSR--~PI~~~~~~~l~~~~ 301 (509)
..+.+.|+++|++++|||||||||... ++..|...+++.+++.....+.+|.+++++ +++.....+..+...
T Consensus 20 ~~r~~~i~~~i~~~~pDIi~LQEv~~~------~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (250)
T 4f1h_A 20 ADRARGLCSYLALYTPDVVFLQELIPA------YVQYLKKRAVSYLFFEGSDDGYFTGIMLRKSRVKFLESEIICFPTTQ 93 (250)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEECHH------HHHHHHHHCTTEEEEESCSSSSEEEEEEETTTCEEEEEEEEECTTCS
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeCCHH------HHHHHHHhccCceeecccccccCceeEEeeccccceecccccccCcc
Confidence 346788999999999999999999532 456777777777666655555666666654 666666556555555
Q ss_pred CCceEEEEEEEeCCccEEEEEEecCCCC--ChHHHHHHHHHHHHHcC---CCCcEEEEecCCCCCCCCCcchhhhhHHHh
Q 010500 302 DFRNVLKATVDVPQIGEVNFHCTHLDHL--DENWRMKQMNAIIQSND---HGEAHILAGALNSLDETDYSSERWTDIVKY 376 (509)
Q Consensus 302 ~~R~~L~a~l~~~g~~~L~VintHL~~~--~~~~R~~Q~~~L~~~L~---~~~PvIL~GDFNs~p~s~~~~~~~~~i~~~ 376 (509)
..+.++.+.+..++ ..+.|+++|+++. ....|..|++.+++.+. ...|+|||||||+.+.+.
T Consensus 94 ~~~~~~~~~~~~~~-~~~~v~~~hl~~~~~~~~~r~~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~~------------ 160 (250)
T 4f1h_A 94 MMRNLLIAQVTFSG-QKLYLMTSHLESCKNQSQERTKQLRVVLQKIKEAPEDAIVIFAGDTNLRDAEV------------ 160 (250)
T ss_dssp SCCEEEEEEEEETT-EEEEEEECBCCCSGGGHHHHHHHHHHHHHHHHHSCTTEEEEEEEECCCCHHHH------------
T ss_pred ccceEEEEEEecCC-cEEEEeccccccccccHHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCcch------------
Confidence 66778888888887 8999999999863 35678889999988773 557999999999865432
Q ss_pred hhhcCCCChhHHHHHHHhhCCceecccccCCCcc--eeEecCC-ccccCCCCCCCceEEEEeCCCCCC-ceeeeEEEEcC
Q 010500 377 YEEMGKPTPKVEVMKFLKSKQYTDSKDFAGECES--VVMIAKG-QSVQGTCKYGTRVDYILASPNSPY-KFVPGSYSVFS 452 (509)
Q Consensus 377 ~~~~G~~~~~~~~~~~L~~~glvDa~~~~~~~~~--tT~~~~g-~~~~~t~~~~~RIDyIf~S~~~~~-kl~v~s~~Vi~ 452 (509)
....+...++.|+|..++.... .+|.... .........+.||||||+++.... .+.+..+.++.
T Consensus 161 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~~~~~~~~~~~~~ 228 (250)
T 4f1h_A 161 ------------ANVGGLPAGVCDVWEQLGKQEHCRYTWDTKANSNKTVPYVSRCRFDRIFLRSAKTAPPVTPDHMALIG 228 (250)
T ss_dssp ------------HTTTSSCTTEEEHHHHTTCCGGGCCSEETTTCCSSCCSSCCEECCEEEEEECCTTSCCCEEEEEEEEC
T ss_pred ------------hhhhhccccchHHHHHhcCCccCCcccccccCCCCCcCCCCCccEEEEEEeCcccccceeeeEEEEec
Confidence 0011124567788877765432 3343221 111122345679999999876422 13344555543
Q ss_pred C------CCCCCccceEEEEE
Q 010500 453 S------KGTSDHHIVKVDIT 467 (509)
Q Consensus 453 ~------~~~SDH~PV~adf~ 467 (509)
. ..+|||+||+|+|+
T Consensus 229 ~~~~~~~~~~SDH~pv~a~f~ 249 (250)
T 4f1h_A 229 MEKLDCGRYTSDHWGIYCTFN 249 (250)
T ss_dssp CSCCTTSSCSCSBCEEEEEEE
T ss_pred ccccCCCCCCCcccCEEEEEe
Confidence 2 24799999999996
No 8
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=2.2e-25 Score=223.46 Aligned_cols=209 Identities=19% Similarity=0.144 Sum_probs=152.6
Q ss_pred cccHHHHHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHhCCcEEEeccC----CCCceeEEE---EeccceeeeEee
Q 010500 224 VGSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAESW----APEYGNAVL---SKWPIKRWKVQK 296 (509)
Q Consensus 224 ~~r~~~I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~lG~~~~f~~s~----~g~~GvAIL---SR~PI~~~~~~~ 296 (509)
..+.+.|+++|++.+|||||||||.. +++..|.+.++.+.+++... ....+++|| ||+|+.....+.
T Consensus 29 ~~r~~~i~~~i~~~~~DIv~LQEv~~------~~~~~l~~~l~~y~~~~~~~~~g~~~g~~~aily~~sr~~i~~~~~~~ 102 (298)
T 3mpr_A 29 GQRYPVIAQMVQYHDFDIFGTQECFL------HQLKDMKEALPGYDYIGVGRDDGKDKGEHSAIFYRTDKFDIVEKGDFW 102 (298)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEESBCH------HHHHHHHHHSTTEEEECCCTTTSSSSSCBCCEEEETTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCH------HHHHHHHHhCCCCcEEEEecCCCCCCCceeEEEEecCceEEEeccEEE
Confidence 34678999999999999999999963 25667777775443343322 123348999 899999988876
Q ss_pred ecCC----------CCCceEEEEEEEeC-CccEEEEEEecCCCCChHHHHHHHHHHHHHcC-----CCCcEEEEecCCCC
Q 010500 297 IFDD----------TDFRNVLKATVDVP-QIGEVNFHCTHLDHLDENWRMKQMNAIIQSND-----HGEAHILAGALNSL 360 (509)
Q Consensus 297 l~~~----------~~~R~~L~a~l~~~-g~~~L~VintHL~~~~~~~R~~Q~~~L~~~L~-----~~~PvIL~GDFNs~ 360 (509)
++.. ...|.++.+.++.. ++..|.|+|+||++.....|..|++.|.+++. .+.|+|||||||+.
T Consensus 103 l~~~p~~~~~~~~~~~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~R~~q~~~l~~~i~~~~~~~~~pvIl~GDfN~~ 182 (298)
T 3mpr_A 103 LSETPDVPSKGWDAVLPRICSWGHFKCKDTGFEFLFFNLHMDHIGKKARVESAFLVQEKMKELGRGKNLPAILTGDFNVD 182 (298)
T ss_dssp SSSSTTSSCCCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSCHHHHHHHHHHHHHHHHHTTTTSCCCEEEEEECSSC
T ss_pred ccCCCCccCcccccccCceeEEEEEEEcCCCCEEEEEEecCCCCCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCC
Confidence 6521 14688999999852 35899999999998788899999999888763 46899999999998
Q ss_pred CCCCCcchhhhhHHHhhhhcCCCChhHHHHHHHhhCC-ceecccccCCCc--ceeEecCCccccCCCCCCCceEEEEeCC
Q 010500 361 DETDYSSERWTDIVKYYEEMGKPTPKVEVMKFLKSKQ-YTDSKDFAGECE--SVVMIAKGQSVQGTCKYGTRVDYILASP 437 (509)
Q Consensus 361 p~s~~~~~~~~~i~~~~~~~G~~~~~~~~~~~L~~~g-lvDa~~~~~~~~--~tT~~~~g~~~~~t~~~~~RIDyIf~S~ 437 (509)
+.+. .++.|.+.+ |.|+|...+... ..||+..+ ....+..||||||+++
T Consensus 183 ~~~~------------------------~~~~l~~~g~l~D~~~~~~~~~~~~~T~~~~~----~~~~~~~rID~Il~s~ 234 (298)
T 3mpr_A 183 QTHQ------------------------SYDAFVSKGVLCDSYEKCDYRYALNGTFNNFD----PNSFTESRIDHIFVSP 234 (298)
T ss_dssp TTSH------------------------HHHHHHTTSSSEEHHHHCSEEECSSCSBCTTC----TTCCCSCCCEEEEECT
T ss_pred CCCH------------------------HHHHHhcCCcchhhHhhhcccCCCCCCccCCC----CCCCCCceEEEEEeCC
Confidence 8753 334454444 999987665322 24553221 1123578999999998
Q ss_pred CCCCceeeeEEEEcCCC----------------------------CCCCccceEEEEEecC
Q 010500 438 NSPYKFVPGSYSVFSSK----------------------------GTSDHHIVKVDITKAQ 470 (509)
Q Consensus 438 ~~~~kl~v~s~~Vi~~~----------------------------~~SDH~PV~adf~L~~ 470 (509)
. +.+..+.++... ..|||+||++++....
T Consensus 235 ~----~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~v~~~~~~ 291 (298)
T 3mpr_A 235 S----FHVKRYGVLTDTYRSVRENSKKEDVRDCPEEITIKAYEARTPSDHFPVKVELVFDL 291 (298)
T ss_dssp T----SEEEEEEECCCCEEEECC----------------CCEEEECSSSBCCEEEEEEECS
T ss_pred C----eeEEEEEEecCccccCCCcccccCcccchhhhccChhhcccCCCCCcEEEEEecch
Confidence 7 677788876431 3599999999998765
No 9
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.93 E-value=3.6e-26 Score=222.48 Aligned_cols=230 Identities=17% Similarity=0.137 Sum_probs=152.4
Q ss_pred cccHHHHHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHhCCcEEEeccCCCCceeEEEEeccceeeeEeeecCC--C
Q 010500 224 VGSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRWKVQKIFDD--T 301 (509)
Q Consensus 224 ~~r~~~I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~lG~~~~f~~s~~g~~GvAILSR~PI~~~~~~~l~~~--~ 301 (509)
..+.+.|+++|++.+||||||||+....... ...+....||.+++.. ..+.+|+|||||+|+..... .++.. .
T Consensus 12 ~~~~~~i~~~i~~~~~Dii~LQE~~~~~~~~---~~~~l~~~gy~~~~~~-~~~~~G~ailsr~~~~~~~~-~~~~~~~~ 86 (268)
T 1ako_A 12 RARPHQLEAIVEKHQPDVIGLQETKVHDDMF---PLEEVAKLGYNVFYHG-QKGHYGVALLTKETPIAVRR-GFPGDDEE 86 (268)
T ss_dssp GGCHHHHHHHHHHHCCSEEEEECCCCCGGGC---CHHHHHHTTCEEEEEE-ETTEEEEEEEESSCCSEEEE-SSTTCCHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEEeccCChhhC---CHhHhccCCCcEEEeC-CCCcceEEEEEecCcceeee-CCCCcccc
Confidence 4478899999999999999999998654321 1223335688876653 34678999999999876542 23221 2
Q ss_pred CCceEEEEEEEeCCccEEEEEEecCCCCCh-------HHHHHHHHHHHHHcC----CCCcEEEEecCCCCCCCCCcch--
Q 010500 302 DFRNVLKATVDVPQIGEVNFHCTHLDHLDE-------NWRMKQMNAIIQSND----HGEAHILAGALNSLDETDYSSE-- 368 (509)
Q Consensus 302 ~~R~~L~a~l~~~g~~~L~VintHL~~~~~-------~~R~~Q~~~L~~~L~----~~~PvIL~GDFNs~p~s~~~~~-- 368 (509)
..+.++.+++.+++ +.+.|+|+|+++... ..|..|++.|.+.+. .+.|+|||||||+.+.+.....
T Consensus 87 ~~~~~~~~~~~~~~-~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~~~~~~~ 165 (268)
T 1ako_A 87 AQRRIIMAEIPSLL-GNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGE 165 (268)
T ss_dssp HHTTEEEEEEEETT-EEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECCCCCSGGGBCSCH
T ss_pred cCCCEEEEEEEcCC-CeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHHhhhCCCCEEEEeECCCCCchhcccCcc
Confidence 34678999999987 799999999986321 357788888877663 5689999999999887542110
Q ss_pred ----hhhhHHHhhhhcCCCChhHHHHHHHhhCCceecccccCCCc--ceeEe-cCCccccCCCCCCCceEEEEeCCCCCC
Q 010500 369 ----RWTDIVKYYEEMGKPTPKVEVMKFLKSKQYTDSKDFAGECE--SVVMI-AKGQSVQGTCKYGTRVDYILASPNSPY 441 (509)
Q Consensus 369 ----~~~~i~~~~~~~G~~~~~~~~~~~L~~~glvDa~~~~~~~~--~tT~~-~~g~~~~~t~~~~~RIDyIf~S~~~~~ 441 (509)
.|... ...+....+.+.++.+.+.+|+|+|+..++.. .+||. ..+.. .+ ...+.||||||+++...
T Consensus 166 ~~~~~w~~~----~~~~~~~~~~~~~~~l~~~gl~D~~~~~~~~~~~~~T~~~~~~~~-~~-~~~~~riD~il~s~~~~- 238 (268)
T 1ako_A 166 ENRKRWLRT----GKCSFLPEEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKG-FD-DNRGLRIDLLLASQPLA- 238 (268)
T ss_dssp HHHHHHHHH----TBTTSCHHHHHHHHHHHHTTEEEHHHHHSTTCCSCCSBCCTTTTH-HH-HTCCBCCEEEEEEHHHH-
T ss_pred cChhhhccC----CCcCcCHHHHHHHHHHhcCCCEEeEhhhCCCCCCCeeEeCCcCCc-cc-cCceEEEEEEEeCHHHH-
Confidence 11100 11222223345666677889999998877642 24543 22210 01 12468999999998631
Q ss_pred ceeeeEEEEcCC----CCCCCccceEEEEE
Q 010500 442 KFVPGSYSVFSS----KGTSDHHIVKVDIT 467 (509)
Q Consensus 442 kl~v~s~~Vi~~----~~~SDH~PV~adf~ 467 (509)
..+..+.+... ..+|||+||+++|.
T Consensus 239 -~~~~~~~i~~~~~~~~~~SDH~pv~~~l~ 267 (268)
T 1ako_A 239 -ECCVETGIDYEIRSMEKPSDHAPVWATFR 267 (268)
T ss_dssp -TTEEEEEECHHHHTSSSCCSBCCEEEEEC
T ss_pred -HHHHhceechhhcCCCCCCCcccEEEEcc
Confidence 12346666542 26899999999984
No 10
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.93 E-value=4.4e-25 Score=213.32 Aligned_cols=225 Identities=19% Similarity=0.158 Sum_probs=143.8
Q ss_pred cccHHHHHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHhCCcEEEeccCCCCceeEEEEeccceeeeEeeecCC--C
Q 010500 224 VGSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRWKVQKIFDD--T 301 (509)
Q Consensus 224 ~~r~~~I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~lG~~~~f~~s~~g~~GvAILSR~PI~~~~~~~l~~~--~ 301 (509)
..+.+.|+++|++.+||||||||+....... ...+....||.+++.. ..+.+|++||||+|+..... .++.. .
T Consensus 12 ~~~~~~i~~~i~~~~~DIv~LQE~~~~~~~~---~~~~~~~~gy~~~~~~-~~~~~G~ailsr~~~~~~~~-~~~~~~~~ 86 (256)
T 2jc4_A 12 NVRLPQVQNLLADNPPDILVLQELKLDQDKF---PAAALQMMGWHCVWSG-QKTYNGVAIVSRSVPQDVHF-GLPALPDD 86 (256)
T ss_dssp HHHHHHHHHHHHSSCCSEEEEECCCSCGGGS---CHHHHHTTTCEEEEEC-CSSSCCEEEEESSCCEEEEE-SCTTSTTC
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeeccchhcC---CHhHHhhcCCeEEECC-CCcceEEEEEECCChHHhee-cCCCCccC
Confidence 3457899999999999999999998764321 1223335788766543 34567999999999986543 23321 1
Q ss_pred CCceEEEEEEEeCCccEEEEEEecCCCCCh------HHHHHHHHHHHHHc----CCCCcEEEEecCCCCCCCCCcchhhh
Q 010500 302 DFRNVLKATVDVPQIGEVNFHCTHLDHLDE------NWRMKQMNAIIQSN----DHGEAHILAGALNSLDETDYSSERWT 371 (509)
Q Consensus 302 ~~R~~L~a~l~~~g~~~L~VintHL~~~~~------~~R~~Q~~~L~~~L----~~~~PvIL~GDFNs~p~s~~~~~~~~ 371 (509)
..+.++.+.+ +.+.|+|+|+++... ..|..|++.|.+.+ ..+.|+|||||||+.+.+.+. +.
T Consensus 87 ~~~~~~~~~~-----~~~~v~~~h~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~il~GDFN~~~~~~d~---~~ 158 (256)
T 2jc4_A 87 PQRRVIAATV-----SGVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADC---YD 158 (256)
T ss_dssp CSCCEEEEEE-----TTEEEEEEECCCCCSTTSHHHHHHHHHHHHHHHHHHHHHTTCSSEEEEEECCCCCSGGGB---SS
T ss_pred CcCcEEEEEe-----CCEEEEEEEecCCCCCCcHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeECCCCCchhhc---cC
Confidence 2233555544 269999999986321 23556777776655 357899999999998775210 00
Q ss_pred hHHHhhhhcCCCChhHHHHHHHhhCCceecccccCCCc-ceeEec-CCccccCCCCCCCceEEEEeCCCCCCcee--eeE
Q 010500 372 DIVKYYEEMGKPTPKVEVMKFLKSKQYTDSKDFAGECE-SVVMIA-KGQSVQGTCKYGTRVDYILASPNSPYKFV--PGS 447 (509)
Q Consensus 372 ~i~~~~~~~G~~~~~~~~~~~L~~~glvDa~~~~~~~~-~tT~~~-~g~~~~~t~~~~~RIDyIf~S~~~~~kl~--v~s 447 (509)
...+....|........++.+...+|+|+|+..++.. .+||.. .+.. . ....+.||||||+++. +. +..
T Consensus 159 -~~~~~~~~~~~~~~~~~~~~l~~~~l~D~~~~~~~~~~~~T~~~~~~~~-~-~~~~~~rID~i~~s~~----~~~~~~~ 231 (256)
T 2jc4_A 159 -PEKWHEKIHCSSVERQWFQNLLDLGLTDSLRQVHPEGAFYTWFDYRGAM-F-QRKLGLRIDHILVSPA----MAAALKD 231 (256)
T ss_dssp -GGGGTTCTTSCHHHHHHHHHHHTTTCEEHHHHHCCSSCCCCBCCTTTTH-H-HHTCCBCCEEEEECHH----HHTTEEE
T ss_pred -hhHhCCCCCcCHHHHHHHHHHHhcCcEEhhhhhCCCCCceeeEcCCCCc-c-ccCcEEEEEEEEECHH----HHhheeE
Confidence 0011112222222333455455789999998777654 355532 2110 0 1234689999999986 33 667
Q ss_pred EEEcCC----CCCCCccceEEEEEe
Q 010500 448 YSVFSS----KGTSDHHIVKVDITK 468 (509)
Q Consensus 448 ~~Vi~~----~~~SDH~PV~adf~L 468 (509)
+.+... ..+|||+||+++|.+
T Consensus 232 ~~v~~~~~~~~~~SDH~pv~~~l~l 256 (256)
T 2jc4_A 232 VRVDLETRALERPSDHAPVTAEFDW 256 (256)
T ss_dssp EEECHHHHTSSSCCSBCCEEEEECC
T ss_pred EEEEhhcccCCCCCCcccEEEEecC
Confidence 887653 368999999999864
No 11
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.93 E-value=4.2e-26 Score=227.05 Aligned_cols=215 Identities=15% Similarity=0.100 Sum_probs=134.0
Q ss_pred cccHHHHHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHhCCcEE------------Eecc---CCCCceeEEEEecc
Q 010500 224 VGSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYV------------FAES---WAPEYGNAVLSKWP 288 (509)
Q Consensus 224 ~~r~~~I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~lG~~~~------------f~~s---~~g~~GvAILSR~P 288 (509)
..+.+.+++.|...+|||||||||....... .....|.+.++|.+. ++.. ..+.+|++||||+|
T Consensus 32 ~~r~~~i~~~~~~~~~DIv~LQEv~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~G~ailSr~p 110 (301)
T 1zwx_A 32 MHRADLIAQADYMKNNDVVILNEAFDTSASH-RLLNNLREMYPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWP 110 (301)
T ss_dssp HHHHHHHHTSGGGSSCSEEEEEEECSHHHHH-HHHHHTTTTCCEECCCTTSCSTTCSEEEC-----CCBCCCCEEEESSC
T ss_pred HHHHHHHHHhhccCCCCEEEEeccccHHHHH-HHHHHHhhcCCccccccCCccccccccccccccccccCCCEEEEecCC
Confidence 3456777777888999999999997542100 111223333333221 1111 12457999999999
Q ss_pred ceeeeEeeecCC-----CCCceEEEEEEEeCCccEEEEEEecCCCC--------ChHHHHHHHHHHHHHcC-----CCCc
Q 010500 289 IKRWKVQKIFDD-----TDFRNVLKATVDVPQIGEVNFHCTHLDHL--------DENWRMKQMNAIIQSND-----HGEA 350 (509)
Q Consensus 289 I~~~~~~~l~~~-----~~~R~~L~a~l~~~g~~~L~VintHL~~~--------~~~~R~~Q~~~L~~~L~-----~~~P 350 (509)
+.....+.++.. ...|+++.+.+++++ +.|.|+|+||.+. ....|..|++.|.+++. .+.|
T Consensus 111 i~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g-~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~p 189 (301)
T 1zwx_A 111 IVEKSQHIFQRGGGADRLSNKGFAYVKIMKNG-KPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEI 189 (301)
T ss_dssp EEEEEEEECSCCCGGGGGBCCEEEEEEEEETT-EEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCTTSE
T ss_pred cccceEEEecCCCCcccccCCCeEEEEEEECC-EEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHHhCCCCCCe
Confidence 998877777631 346889999999987 8999999999864 34568899999888763 3579
Q ss_pred EEEEecCCCCCCCCCcchhhhhHHHhhhhcCCCChhHHHHHHHhhCCce--ecccccCCCcceeEecCCc----cccCCC
Q 010500 351 HILAGALNSLDETDYSSERWTDIVKYYEEMGKPTPKVEVMKFLKSKQYT--DSKDFAGECESVVMIAKGQ----SVQGTC 424 (509)
Q Consensus 351 vIL~GDFNs~p~s~~~~~~~~~i~~~~~~~G~~~~~~~~~~~L~~~glv--Da~~~~~~~~~tT~~~~g~----~~~~t~ 424 (509)
+|||||||+.+.+. .+. .++...++. |+|. +.++||..... ...+.
T Consensus 190 vIl~GDfN~~~~~~----~~~-------------------~l~~~~~~~~~d~~~----g~~~T~~~~~n~~~~~t~~~- 241 (301)
T 1zwx_A 190 IFIGGDLNVNYGTD----EYH-------------------DMLKLLNVSSPANFN----GQMATWDPTTNSMLKESYPK- 241 (301)
T ss_dssp EEEEEECCCCTTSH----HHH-------------------HHHHHHTBCCCTTCC----TTSCSBCTTTCHHHHHHCTT-
T ss_pred EEEEeeCCCCCCcH----HHH-------------------HHHHHcCCCCCcccc----CCCceECCccCccccccCCC-
Confidence 99999999998764 111 112122343 6664 22344532110 01122
Q ss_pred CCCCceEEEEeCCCCCCc--------------eeeeEEEEcCC-CCCCCccceEEEEEe
Q 010500 425 KYGTRVDYILASPNSPYK--------------FVPGSYSVFSS-KGTSDHHIVKVDITK 468 (509)
Q Consensus 425 ~~~~RIDyIf~S~~~~~k--------------l~v~s~~Vi~~-~~~SDH~PV~adf~L 468 (509)
.+..||||||+++..... +.+..+.+... ..+|||+||+++|.+
T Consensus 242 ~~~~rID~I~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~SDH~Pv~a~l~~ 300 (301)
T 1zwx_A 242 AAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTYQDFSDHYPVVGFTDN 300 (301)
T ss_dssp SCCBCCEEEEEBTTSCCCSCEEEEECCCCCCCEEEEETTEEEEECCSSSSCCEEEEEC-
T ss_pred CCcceEeEEEEeCCCCCcccccceeeccccccceeecccCCccccCCCCCccEEEEEec
Confidence 357899999999863211 11111111111 368999999999976
No 12
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.92 E-value=4.6e-24 Score=206.97 Aligned_cols=226 Identities=16% Similarity=0.121 Sum_probs=139.0
Q ss_pred ccHHHHHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHhCCcEEEeccCCCCceeEEEEeccceeeeEeeecCC--CC
Q 010500 225 GSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRWKVQKIFDD--TD 302 (509)
Q Consensus 225 ~r~~~I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~lG~~~~f~~s~~g~~GvAILSR~PI~~~~~~~l~~~--~~ 302 (509)
.+.+.|+++|++.+||||||||+....... ....+ ...||.+++.. ..+.+|+|||||+|+..... .++.. .+
T Consensus 14 ~~~~~i~~~i~~~~~Dii~lQE~~~~~~~~--~~~~~-~~~gy~~~~~~-~~~~~G~ailsr~~~~~~~~-~~~~~~~~~ 88 (257)
T 2voa_A 14 SRLHIVIPWLKENKPDILCMQETKVENRKF--PEADF-HRIGYHVVFSG-SKGRNGVAIASLEEPEDVSF-GLDSEPKDE 88 (257)
T ss_dssp GTHHHHHHHHHHHCCSEEEEECCCCCGGGC--CHHHH-HTTTCEEEEEE-ETTEEEEEEEESSCCEEEEE-SCSSSSCCG
T ss_pred HHHHHHHHHHhhcCCCEEEEEEeecchhhc--CHHHh-hhCCCcEEEcC-CCCccEEEEEEccChHHhee-cCCCCcccc
Confidence 457889999999999999999997653221 11122 34688766543 34567999999999976432 23321 14
Q ss_pred CceEEEEEEEeCCccEEEEEEecCCCCCh------HHHHHHHHHHHHHc----CCCCcEEEEecCCCCCCCCCcchhhhh
Q 010500 303 FRNVLKATVDVPQIGEVNFHCTHLDHLDE------NWRMKQMNAIIQSN----DHGEAHILAGALNSLDETDYSSERWTD 372 (509)
Q Consensus 303 ~R~~L~a~l~~~g~~~L~VintHL~~~~~------~~R~~Q~~~L~~~L----~~~~PvIL~GDFNs~p~s~~~~~~~~~ 372 (509)
.| ++.+.+ ..+.|+|+|+++... ..|..+++.|.+++ ..+.|+|||||||+.+.+.+ .|..
T Consensus 89 ~r-~l~~~~-----~~~~v~~~h~p~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~p~Il~GDFN~~~~~~d---~~~~ 159 (257)
T 2voa_A 89 DR-LIRAKI-----AGIDVINTYVPQGFKIDSEKYQYKLQWLERLYHYLQKTVDFRSFAVWCGDMNVAPEPID---VHSP 159 (257)
T ss_dssp GG-EEEEEE-----TTEEEEEEECCCCSCTTSHHHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECSCCCSGGG---BSCG
T ss_pred Cc-EEEEEE-----CCEEEEEEEeCCCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEeeCCCCCchhh---ccCh
Confidence 56 555544 369999999986331 22445566666554 35689999999998876421 1110
Q ss_pred HHHhhhhcCCCChhHHHHHHHhhCCceecccccCCCc-ceeEecC-CccccCCCCCCCceEEEEeCCCCCCceeeeEEEE
Q 010500 373 IVKYYEEMGKPTPKVEVMKFLKSKQYTDSKDFAGECE-SVVMIAK-GQSVQGTCKYGTRVDYILASPNSPYKFVPGSYSV 450 (509)
Q Consensus 373 i~~~~~~~G~~~~~~~~~~~L~~~glvDa~~~~~~~~-~tT~~~~-g~~~~~t~~~~~RIDyIf~S~~~~~kl~v~s~~V 450 (509)
.......|........++.+.+.+|.|+|+..++.. .+||... .... .....+.||||||+++.... .+..+.+
T Consensus 160 -~~~~~~~~~~~~~~~~~~~l~~~~l~D~~~~~~p~~~~~T~~~~~~~~~-~~~~~~~rID~i~~s~~~~~--~~~~~~v 235 (257)
T 2voa_A 160 -DKLKNHVCFHEDARRAYKKILELGFVDVLRKIHPNERIYTFYDYRVKGA-IERGLGWRGDAILATPPLAE--RCVDCYA 235 (257)
T ss_dssp -GGCTTSTTTCHHHHHHHHHHHTTTCEEHHHHHSTTCCCCSBCCTTSTTT-TTTTCCBCCEEEEECHHHHT--TEEEEEE
T ss_pred -hHhCCCCCCCHHHHHHHHHHHHcCcEeeehhhCCCCCCcceeccccCCc-eecCceEEEEEEEECHHHHh--hhheeEe
Confidence 000011122222223444444789999998776543 3555432 1110 01235689999999986211 1567777
Q ss_pred cCC----CCCCCccceEEEEEe
Q 010500 451 FSS----KGTSDHHIVKVDITK 468 (509)
Q Consensus 451 i~~----~~~SDH~PV~adf~L 468 (509)
... ..+|||+||+++|.+
T Consensus 236 ~~~~~~~~~~SDH~pv~~~l~~ 257 (257)
T 2voa_A 236 DIKPRLAEKPSDHLPLVAVFDV 257 (257)
T ss_dssp CCHHHHSSSCCSBCCEEEEECC
T ss_pred ehhhccCCCCCCccCEEEEEeC
Confidence 653 368999999999864
No 13
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.91 E-value=8.7e-24 Score=201.70 Aligned_cols=222 Identities=13% Similarity=0.104 Sum_probs=140.4
Q ss_pred eeecCCCCCcccHHHHHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHhCCcEEE-eccCCCCceeEEEEeccceeee
Q 010500 215 SFPTSSIASVGSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVF-AESWAPEYGNAVLSKWPIKRWK 293 (509)
Q Consensus 215 ~~~~~~~~~~~r~~~I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~lG~~~~f-~~s~~g~~GvAILSR~PI~~~~ 293 (509)
+||.++.....+.+.+.++|++.+||||||||+...... +..+. ..||.+.| .....+..|+|||+|.++....
T Consensus 12 t~Nv~g~~~~~~~~~~~~~i~~~~~DIv~LQE~~~~~~~----~~~l~-~~~y~~~~~~~~~~~~~Gvail~r~~~~~~~ 86 (238)
T 1vyb_A 12 TLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRD----THRLK-IKGWRKIYQANGKQKKAGVAILVSDKTDFKP 86 (238)
T ss_dssp EEECSCCCSHHHHHHHHHHHHHHCCSEEEEECCCCCTTS----GGGCC-CTTCCEEEEECCSSSSCCEEEEECTTCCCEE
T ss_pred EEecccCCchhhHHHHHHHHHHcCCCEEEEecccCCCCC----chhHh-hCCCCeEEEccCCCCCceEEEEEeCCCCccc
Confidence 455544444445589999999999999999999754221 11121 24676654 3323356799999998632211
Q ss_pred EeeecCCCCCceEEEEEEEeCCccEEEEEEecCCCCChHHHHHHHHHHHHHcC--CCCcEEEEecCCCCCCCCCcchhhh
Q 010500 294 VQKIFDDTDFRNVLKATVDVPQIGEVNFHCTHLDHLDENWRMKQMNAIIQSND--HGEAHILAGALNSLDETDYSSERWT 371 (509)
Q Consensus 294 ~~~l~~~~~~R~~L~a~l~~~g~~~L~VintHL~~~~~~~R~~Q~~~L~~~L~--~~~PvIL~GDFNs~p~s~~~~~~~~ 371 (509)
. ....+.+.| ++.+.+.+++ ..+.|+++|+++.... ++++.+.+.+. .+.|+|||||||+.+.+. +
T Consensus 87 ~-~~~~~~~~r-~i~~~~~~~~-~~~~v~~~y~p~~~~~---~~~~~l~~~l~~~~~~~~Il~GDFN~~~~~~------~ 154 (238)
T 1vyb_A 87 T-KIKRDKEGH-YIMVKGSIQQ-EELTILNIYAPNTGAP---RFIKQVLSDLQRDLDSHTLIMGDFNTPLSTL------D 154 (238)
T ss_dssp E-EEEECTTSS-EEEEEEEETT-EEEEEEEEECCSSSHH---HHHHHHHHHTTTTCCTTEEEEEECSSCSSGG------G
T ss_pred c-ceeEcCCCc-EEEEEEEeCC-CcEEEEEEecCCCCcH---HHHHHHHHHHHhccCCCEEEEccCCCCCCcc------c
Confidence 1 111223455 5667888766 8999999999864332 35666777764 357999999999976532 1
Q ss_pred hHHHhhhhcCCCChh-HHHHHHHhhCCceecccccCCC-cceeEecCCccccCCCCCCCceEEEEeCCCCCCceeeeEEE
Q 010500 372 DIVKYYEEMGKPTPK-VEVMKFLKSKQYTDSKDFAGEC-ESVVMIAKGQSVQGTCKYGTRVDYILASPNSPYKFVPGSYS 449 (509)
Q Consensus 372 ~i~~~~~~~G~~~~~-~~~~~~L~~~glvDa~~~~~~~-~~tT~~~~g~~~~~t~~~~~RIDyIf~S~~~~~kl~v~s~~ 449 (509)
. . ..+..... ..+.+++...+|.|+|+..++. ..+||.... .....||||||+++... ..+..+.
T Consensus 155 ~----~-~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~~T~~~~~------~~~~~rID~i~~s~~~~--~~~~~~~ 221 (238)
T 1vyb_A 155 R----S-TRQKVNKDTQELNSALHQADLIDIYRTLHPKSTEYTFFSAP------HHTYSKIDHIVGSKALL--SKCKRTE 221 (238)
T ss_dssp B----T-TCCCCCHHHHHHHHHHHHTTEEEHHHHHCTTCCCCSEEETT------TTEEECCEEEEEEGGGG--GGEEEEE
T ss_pred c----C-CCCCCcHHHHHHHHHHhhCCCEEhhHhhCCCCCceeEEcCC------CCcccceEEEEeCHHHH--hhhhhce
Confidence 0 0 01111222 2344566678999999876553 235554321 11256999999998732 1256777
Q ss_pred EcCCCCCCCccceEEEEE
Q 010500 450 VFSSKGTSDHHIVKVDIT 467 (509)
Q Consensus 450 Vi~~~~~SDH~PV~adf~ 467 (509)
+.. ...|||+||+++|.
T Consensus 222 v~~-~~~SDH~pv~~~l~ 238 (238)
T 1vyb_A 222 IIT-NYLSDHSAIKLELR 238 (238)
T ss_dssp EEC-CSSSSSCEEEEEEC
T ss_pred eec-CCCCCcccEEEEeC
Confidence 775 47999999999973
No 14
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.91 E-value=1.9e-24 Score=209.32 Aligned_cols=223 Identities=18% Similarity=0.189 Sum_probs=141.3
Q ss_pred HHHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHhCCcEEEecc-CCCCceeEEEEeccceeeeEeeecC---CCCCc
Q 010500 229 TVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAES-WAPEYGNAVLSKWPIKRWKVQKIFD---DTDFR 304 (509)
Q Consensus 229 ~I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~lG~~~~f~~s-~~g~~GvAILSR~PI~~~~~~~l~~---~~~~R 304 (509)
.|+++|++++||||||||+....... ...+....||.+++... ..+.+|+|||||+|+..... .++. +...|
T Consensus 19 ~i~~~i~~~~~DIi~LQE~~~~~~~~---~~~l~~~~gy~~~~~~~~~~~~~G~ailsr~~~~~~~~-~~~~~~~~~~~r 94 (259)
T 2jc5_A 19 GFYEYIAASGADIVCVQELKAQEADL---SADMKNPHGMHGHWHCAEKRGYSGVAVYSKRKPDNVQI-GMGIEEFDREGR 94 (259)
T ss_dssp THHHHHHHTTCSEEEEECCCCCGGGC---CHHHHSGGGCEEEEECCSSTTCCCEEEEESSCCSEEEE-SCSCHHHHTTCC
T ss_pred HHHHHHHhcCCCEEEEEEecchhhcc---ChhhccccCCeEEEeccCCCCcceEEEEEecCceeEEe-CCCCCccCCCCe
Confidence 39999999999999999998664321 12354456888776642 34567999999999876543 1221 12344
Q ss_pred eEEEEEEEeCCccEEEEEEecCCCCC-hHHHH----HHHHHHHHHcC----CCCcEEEEecCCCCCCCCCcchhhhhHHH
Q 010500 305 NVLKATVDVPQIGEVNFHCTHLDHLD-ENWRM----KQMNAIIQSND----HGEAHILAGALNSLDETDYSSERWTDIVK 375 (509)
Q Consensus 305 ~~L~a~l~~~g~~~L~VintHL~~~~-~~~R~----~Q~~~L~~~L~----~~~PvIL~GDFNs~p~s~~~~~~~~~i~~ 375 (509)
++.+.+ +.+.|+|+|+++.. ...|. .|++.|.+.+. .+.|+|||||||+.+.+.+. ..|..
T Consensus 95 -~~~~~~-----~~~~v~~~h~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~~~~~~Il~GDFN~~~~~~d~-~~~~~--- 164 (259)
T 2jc5_A 95 -FVRCDF-----GRLSVISLYLPSGSSAEERQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDL-KNWKG--- 164 (259)
T ss_dssp -EEEEEE-----TTEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEECCCCCSGGGB-SCSTT---
T ss_pred -EEEEEc-----CCEEEEEEeccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeeCCCCCchhhc-cChhh---
Confidence 444443 46999999998633 23333 56666766553 46899999999998765210 00110
Q ss_pred hhhhcCCCChhH-HHHHHHhhCCceecccccCCC-cceeEecCCccccCCCCCCCceEEEEeCCCCCCcee--eeEEEEc
Q 010500 376 YYEEMGKPTPKV-EVMKFLKSKQYTDSKDFAGEC-ESVVMIAKGQSVQGTCKYGTRVDYILASPNSPYKFV--PGSYSVF 451 (509)
Q Consensus 376 ~~~~~G~~~~~~-~~~~~L~~~glvDa~~~~~~~-~~tT~~~~g~~~~~t~~~~~RIDyIf~S~~~~~kl~--v~s~~Vi 451 (509)
.....|...... ....++...+|.|+|+..++. ..+||....... .....+.||||||+++. +. +..+.+.
T Consensus 165 ~~~~~~~~~~~~~~~~~~l~~~~l~d~~~~~~~~~~~~T~~~~~~~~-~~~~~~~rID~i~~s~~----~~~~~~~~~v~ 239 (259)
T 2jc5_A 165 NQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDVPGYTWWSNRGQA-YAKDVGWRIDYQMVTPE----LAAKAVSAHVY 239 (259)
T ss_dssp CTTSTTSCHHHHHHHHHHHHTTCCEEHHHHHCTTCCCCCEESCSSHH-HHTTCEECCEEEEECHH----HHTTEEEEEEC
T ss_pred cCCCCCcCHHHHHHHHHHhccCCcEEeeHhhCCCCCCccEECCcCCC-ccCCCeeEEEEEEECHH----HHhHHhheeec
Confidence 000111111111 234455578999999877653 335665322110 01123579999999986 33 6788888
Q ss_pred CCCCCCCccceEEEEEecC
Q 010500 452 SSKGTSDHHIVKVDITKAQ 470 (509)
Q Consensus 452 ~~~~~SDH~PV~adf~L~~ 470 (509)
.....|||+||+++|.+..
T Consensus 240 ~~~~~SDH~pv~~~l~~~~ 258 (259)
T 2jc5_A 240 KDEKFSDHAPLVVEYDYAA 258 (259)
T ss_dssp CSSCCSSBCCEEEEESCCC
T ss_pred CCCCCCCcccEEEEEeccc
Confidence 6668999999999998764
No 15
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=99.90 E-value=1.1e-23 Score=225.76 Aligned_cols=230 Identities=14% Similarity=0.088 Sum_probs=140.2
Q ss_pred HHHHHHHHccCCcEEEEcCccCCcccCCChHHH---HHHHhCCcEEEec--cCCCCceeEEEEeccce-----eeeEeee
Q 010500 228 RTVLEVLRELDADLLALQDVKAEEENSMKPLSD---LAAALGMNYVFAE--SWAPEYGNAVLSKWPIK-----RWKVQKI 297 (509)
Q Consensus 228 ~~I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~---La~~lG~~~~f~~--s~~g~~GvAILSR~PI~-----~~~~~~l 297 (509)
+.|.++|++++||||||||++.... ++.. |+...||.++|.. ...+++|+|||+|+|+. ......+
T Consensus 169 ~~i~~~I~~~~pDIVcLQEtk~~~~----~~~~~~~la~~~GY~~~~~~~~~~~g~~GVAIlsR~pi~~~~l~~~~~~~~ 244 (467)
T 2j63_A 169 SALRAFMEAEKPDVLCLQETKLNVD----EADANATLGVVDGYSFVDHPCAFKRGYSGTRTYMKNSTTVKGLHARCTRGF 244 (467)
T ss_dssp THHHHHHHHHCCSEEEEECCCCCTT----CHHHHHTSSCCTTEEEEEECCSSSTTSCCEEEEEECCCCCCTSCCEEEESS
T ss_pred HHHHHHHHHcCCCEEEEEecccchh----ccchHHHHhhcCCceEEEecccCCCCcceEEEEEeCCccccccceeeeecc
Confidence 5799999999999999999986431 1221 3223577666553 23467899999999984 1111112
Q ss_pred c--------------------CCCCCceEEEEEEEeCCc-----cEEEEEEecCCCCC-h----HHHHHHH-HHHHHH--
Q 010500 298 F--------------------DDTDFRNVLKATVDVPQI-----GEVNFHCTHLDHLD-E----NWRMKQM-NAIIQS-- 344 (509)
Q Consensus 298 ~--------------------~~~~~R~~L~a~l~~~g~-----~~L~VintHL~~~~-~----~~R~~Q~-~~L~~~-- 344 (509)
. .+.+.| ++.+.+.+.++ ..|.|+|+|+++.. . ..|..++ +.|.++
T Consensus 245 ~~p~~~~~~~~~gs~~~~~~~~D~egR-~I~a~~~~~g~~~~~~~~~~vinvYlP~~~~~~~r~~~K~~~~~~~L~~~l~ 323 (467)
T 2j63_A 245 ALPSEPQADAAAGSRVLVEGAGDEEGR-VLTTFLSPDPDSASSSSRIALVNTYVANSGMGLTRLPYRVQSFDPSMREYLH 323 (467)
T ss_dssp CCCCC-----------CCCCCCCTTCC-EEEEEECSSCCC----CCEEEEEEECCCCCTTSTTHHHHHHTHHHHHHHHHH
T ss_pred ccccccccccccccccccccccCCCCc-EEEEEEEeCCcccccCceEEEEEEECCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 1 123566 56677765431 67999999998632 1 1232222 223222
Q ss_pred -cC-------------------CCCcEEEEecCCCCCCCCCcch--hhhhHHHhhhhcCCCChhHH-HHHHHhhCCceec
Q 010500 345 -ND-------------------HGEAHILAGALNSLDETDYSSE--RWTDIVKYYEEMGKPTPKVE-VMKFLKSKQYTDS 401 (509)
Q Consensus 345 -L~-------------------~~~PvIL~GDFNs~p~s~~~~~--~~~~i~~~~~~~G~~~~~~~-~~~~L~~~glvDa 401 (509)
+. ...|+|||||||+.+.+.+... .|... ....|+...+++ +..+|...+|+|+
T Consensus 324 ~l~~~~~~~~~~r~~~a~g~~~~~~pvIL~GDFN~~p~~~D~~~~~~~~~~---~~~~gf~~~er~~~~~lL~~~gL~Da 400 (467)
T 2j63_A 324 RLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERDYDRYYAGTFKSM---QECSGFAPEERMSFRETMQRTNSVDI 400 (467)
T ss_dssp HHHHHHTTTTC----------CCSCEEEEEEECCCCCSTTSBCCCSCHHHH---TTSTTSCHHHHHHHHHHHHHTTEEEH
T ss_pred HhhhhcccccccchhhhhcccccCCcEEEeccccCCCchhhhccccchhhc---ccccccCHHHHHHHHHHHhhCCCEEe
Confidence 21 3579999999999876532110 02211 111233322233 3344556899999
Q ss_pred ccccCCCc--cee-EecCCccccCCCCCCCceEEEEeCCCCCCceeeeEEEEcCCCCCCCccceEEEEEec
Q 010500 402 KDFAGECE--SVV-MIAKGQSVQGTCKYGTRVDYILASPNSPYKFVPGSYSVFSSKGTSDHHIVKVDITKA 469 (509)
Q Consensus 402 ~~~~~~~~--~tT-~~~~g~~~~~t~~~~~RIDyIf~S~~~~~kl~v~s~~Vi~~~~~SDH~PV~adf~L~ 469 (509)
|+..++.. .+| |.+.... ...+.+.||||||+++... ..+..+.+..+..+|||+||+++|.++
T Consensus 401 fR~~~p~~~~~yTw~s~r~~~--~~~n~g~RIDyIlvS~~l~--~~v~~~~I~~~~~~SDH~PV~~~l~~p 467 (467)
T 2j63_A 401 FRQLYPQAGPVYSFWSQRING--RPRNLGWRLDYFVVSSRLA--SYVVDCFPMPTVMGSDHCPFQMWMRHP 467 (467)
T ss_dssp HHHHCTTBCSCCSBCCTTTTT--TTTTCCBCCEEEEEEGGGG--GGEEEEEECTTCCSSSBCCEEEEEECC
T ss_pred hHhhCCCCCCCccccCCCCCc--ccCCCCceeEEEEEcHHHH--cceeEEEECCCCCCCCcccEEEEEEcC
Confidence 99887642 244 4433211 1124578999999998732 126788887766799999999999863
No 16
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=99.90 E-value=1.3e-23 Score=206.08 Aligned_cols=224 Identities=17% Similarity=0.158 Sum_probs=142.8
Q ss_pred HHHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHhCCcEEEecc-CCCCceeEEEEeccceeeeEeeecC---CCCCc
Q 010500 229 TVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAES-WAPEYGNAVLSKWPIKRWKVQKIFD---DTDFR 304 (509)
Q Consensus 229 ~I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~lG~~~~f~~s-~~g~~GvAILSR~PI~~~~~~~l~~---~~~~R 304 (509)
.+.++|++.+||||||||++....... ..+....||.+++... ..+..|+|||+|.|+..... .+.. +.+.|
T Consensus 21 ~l~~~i~~~~~DIv~LQEt~~~~~~~~---~~~~~~~gy~~~~~~~~~~~~~Gvail~k~~~~~~~~-~~~~~~~d~~gr 96 (265)
T 3g91_A 21 GFLKWFMEEKPDILCLQEIKAAPEQLP---RKLRHVEGYRSFFTPAERKGYSGVAMYTKVPPSSLRE-GFGVERFDTEGR 96 (265)
T ss_dssp THHHHHHHHCCSEEEEECCCSCGGGSC---HHHHCCTTCEEEEECBSSTTSCCEEEEESSCCSEEEC-CCSCHHHHSBSC
T ss_pred hHHHHHHhcCCCEEEEEeccccccccC---hhhhcccCCcEEEccCCCCCcCEEEEEEecChHHhcc-CCCCcccCCcCC
Confidence 499999999999999999976643211 2233346887666543 34567999999998865432 1111 12344
Q ss_pred eEEEEEEEeCCccEEEEEEecCCCCChH-----HHHHHHHHHHHHcC----CCCcEEEEecCCCCCCCCCcchhhhhHHH
Q 010500 305 NVLKATVDVPQIGEVNFHCTHLDHLDEN-----WRMKQMNAIIQSND----HGEAHILAGALNSLDETDYSSERWTDIVK 375 (509)
Q Consensus 305 ~~L~a~l~~~g~~~L~VintHL~~~~~~-----~R~~Q~~~L~~~L~----~~~PvIL~GDFNs~p~s~~~~~~~~~i~~ 375 (509)
++.+. . ..+.|+++|++..... .|..+++.|.+++. .+.|+|||||||+.+...+.. .+. .
T Consensus 97 -~i~~~--~---~~~~i~~vy~p~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~ii~GDfN~~~~~~d~~-~~~---~ 166 (265)
T 3g91_A 97 -IQIAD--F---DDFLLYNIYFPNGAMSEERLKYKLEFYDAFLEDVNRERDSGRNVIICGDFNTAHREIDLA-RPK---E 166 (265)
T ss_dssp -EEEEE--C---SSCEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECCCCCSGGGBS-CTG---G
T ss_pred -EEEEE--e---CCEEEEEEEecCCCCCchhHHHHHHHHHHHHHHHHHHHcCCCCEEEECccccCCchhhcc-CHh---h
Confidence 33332 2 4689999999863221 24556666666553 468999999999988642110 011 1
Q ss_pred hhhhcCCCChhHHHHHHHhhCCceecccccCCCcc-eeE-ecCCccccCCCCCCCceEEEEeCCCCCCceeeeEEEEcCC
Q 010500 376 YYEEMGKPTPKVEVMKFLKSKQYTDSKDFAGECES-VVM-IAKGQSVQGTCKYGTRVDYILASPNSPYKFVPGSYSVFSS 453 (509)
Q Consensus 376 ~~~~~G~~~~~~~~~~~L~~~glvDa~~~~~~~~~-tT~-~~~g~~~~~t~~~~~RIDyIf~S~~~~~kl~v~s~~Vi~~ 453 (509)
.....|....+.+.++.+.+.+|+|+|+..++... +|| ...+.. .....+.||||||+++.... .+..+.+...
T Consensus 167 ~~~~~~~~~~~~~~~~~l~~~gl~D~~r~~~p~~~~yT~~~~~~~~--~~~~~~~rID~il~s~~~~~--~~~~~~i~~~ 242 (265)
T 3g91_A 167 NSNVSGFLPVERAWIDKFIENGYVDTFRMFNSDPGQYTWWSYRTRA--RERNVGWRLDYFFVNEEFKG--KVKRSWILSD 242 (265)
T ss_dssp GTTSTTSCHHHHHHHHHHHHTTEEETHHHHCCCSCCCSBCCSSTTT--TTTTCCBCCEEEEEEGGGGG--GEEEEEECTT
T ss_pred cCCCCccCHHHHHHHHHHHhcCcEEeeHhhCCCCCCCCCcCCCCCc--cccCceEEEEEEEECHHHHh--hhcEEEEeCC
Confidence 11222333334455555558899999998776543 444 333211 12345789999999987321 4668888776
Q ss_pred CCCCCccceEEEEEecC
Q 010500 454 KGTSDHHIVKVDITKAQ 470 (509)
Q Consensus 454 ~~~SDH~PV~adf~L~~ 470 (509)
..+|||+||++++..+.
T Consensus 243 ~~~SDH~Pv~~~~~~~~ 259 (265)
T 3g91_A 243 VMGSDHCPIGLEIELLE 259 (265)
T ss_dssp CCSSSBCCEEEEEECCC
T ss_pred CCCCCcceEEEEhhhhh
Confidence 67899999999998665
No 17
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.90 E-value=3.4e-23 Score=206.19 Aligned_cols=136 Identities=16% Similarity=0.159 Sum_probs=95.6
Q ss_pred ccHHHHHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHhCC-------------cEEEecc---CCCCceeEEEEecc
Q 010500 225 GSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGM-------------NYVFAES---WAPEYGNAVLSKWP 288 (509)
Q Consensus 225 ~r~~~I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~lG~-------------~~~f~~s---~~g~~GvAILSR~P 288 (509)
.+.+.+...+...+|||||||||...... ......|...++| .+.|+.. ..+.+|++||||+|
T Consensus 32 ~r~~~~~~~~~~~~~DIv~LQEv~~~~~~-~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ailSr~p 110 (306)
T 2ddr_A 32 ERADLIGAADYIKNQDVVILNEVFDNSAS-DRLLGNLKKEYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWP 110 (306)
T ss_dssp HHHHHHHHCSTTCSCSEEEEEEECCHHHH-HHHHHHHTTTCCEECCCTTSCCSTTSSEEEESCCTTCSSCCCCEEEESSC
T ss_pred HHHHHHHHHhhccCCCEEEEEeecCHHHH-HHHHHHHhhhCCceeeccCcccccccccccccccccCccCCeEEEEECCC
Confidence 35667777788899999999999654210 0011122222222 1122211 12467999999999
Q ss_pred ceeeeEeeecCC-----CCCceEEEEEEEeCCccEEEEEEecCCCC--------ChHHHHHHHHHHHHHcC-----CCCc
Q 010500 289 IKRWKVQKIFDD-----TDFRNVLKATVDVPQIGEVNFHCTHLDHL--------DENWRMKQMNAIIQSND-----HGEA 350 (509)
Q Consensus 289 I~~~~~~~l~~~-----~~~R~~L~a~l~~~g~~~L~VintHL~~~--------~~~~R~~Q~~~L~~~L~-----~~~P 350 (509)
+.....+.++.. ...|+++.+.+++++ +.|.|+|+||.+. ....|..|++.|.+++. .+.|
T Consensus 111 i~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~g-~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~p 189 (306)
T 2ddr_A 111 IAEKIQYVFAKGCGPDNLSNKGFVYTKIKKND-RFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNNEY 189 (306)
T ss_dssp EEEEEEEECSCCC----CCCCEEEEEEEEETT-EEEEEEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTCCTTSC
T ss_pred cccccEEEcCCCCCcchhcCCCeEEEEEEeCC-EEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHHhcCCCCCE
Confidence 998777666532 357899999999986 8999999999864 34568899999888763 3579
Q ss_pred EEEEecCCCCCC
Q 010500 351 HILAGALNSLDE 362 (509)
Q Consensus 351 vIL~GDFNs~p~ 362 (509)
+|||||||+.+.
T Consensus 190 vil~GDfN~~~~ 201 (306)
T 2ddr_A 190 VLIGGDMNVNKI 201 (306)
T ss_dssp EEEEEECCCCCT
T ss_pred EEEEeeCCCCcc
Confidence 999999999983
No 18
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=99.90 E-value=1.8e-23 Score=211.86 Aligned_cols=222 Identities=18% Similarity=0.133 Sum_probs=132.0
Q ss_pred HHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHhCC-cEEEec-c-CCCCceeEEEEeccceeeeEeeec---CCCCC
Q 010500 230 VLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGM-NYVFAE-S-WAPEYGNAVLSKWPIKRWKVQKIF---DDTDF 303 (509)
Q Consensus 230 I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~lG~-~~~f~~-s-~~g~~GvAILSR~PI~~~~~~~l~---~~~~~ 303 (509)
|+++|++++||||||||+...... ....|....|| +.++.. . ..+.+|+|||||+|+..... .++ .+.+.
T Consensus 80 i~~~i~~~~~DIi~LQE~~~~~~~---~~~~l~~~~gy~~~~~~~~~~~~g~~Gvailsr~~~~~~~~-~~~~~~~~~~~ 155 (318)
T 1hd7_A 80 GLDWVKEEAPDILCLQETKCSENK---LPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSY-GIGDEEHDQEG 155 (318)
T ss_dssp HHHHHHHHCCSEEEEECCCCCC--------------CCCEEEEECC-----CCCEEEEESSCCSEEEE-SCSCGGGSSSS
T ss_pred HHHHHHhhCCCEEEEEEccCchhh---ccHHHHhcCCCceEEEecCCCCCccceEEEEEcCCceeEEe-cCCCcccCCCC
Confidence 899999999999999999765321 11234445688 444443 1 23567999999999765432 121 12345
Q ss_pred ceEEEEEEEeCCccEEEEEEecCCCCCh-----HHHHHHHHHHHHHcC---CCCcEEEEecCCCCCCCCCcchhhhhHHH
Q 010500 304 RNVLKATVDVPQIGEVNFHCTHLDHLDE-----NWRMKQMNAIIQSND---HGEAHILAGALNSLDETDYSSERWTDIVK 375 (509)
Q Consensus 304 R~~L~a~l~~~g~~~L~VintHL~~~~~-----~~R~~Q~~~L~~~L~---~~~PvIL~GDFNs~p~s~~~~~~~~~i~~ 375 (509)
| ++.+.+ +.+.|+++|+++... ..|..|++.|.+++. ...|+|||||||+.+...+ .|.. ..
T Consensus 156 r-~l~~~~-----~~~~v~~vh~p~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~pvIl~GDFN~~~~~~D---~~~~-~~ 225 (318)
T 1hd7_A 156 R-VIVAEF-----DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEID---LRNP-KG 225 (318)
T ss_dssp C-EEEEEC-----SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHHHHHHSCEEEEEECSCCCSGGG---BSCH-HH
T ss_pred c-EEEEEc-----CCEEEEEEEcCCCCCccccHHHHHHHHHHHHHHHHhcccCCCEEEEeeCCCCChhhh---ccCh-hh
Confidence 6 444433 469999999986432 246677787777663 2379999999999876421 1110 01
Q ss_pred hhhhcCCCChhHHHH-HHHhhCCceecccccCCCc--ceeEecCCccccCCCCCCCceEEEEeCCCCCCceeeeEEEEcC
Q 010500 376 YYEEMGKPTPKVEVM-KFLKSKQYTDSKDFAGECE--SVVMIAKGQSVQGTCKYGTRVDYILASPNSPYKFVPGSYSVFS 452 (509)
Q Consensus 376 ~~~~~G~~~~~~~~~-~~L~~~glvDa~~~~~~~~--~tT~~~~g~~~~~t~~~~~RIDyIf~S~~~~~kl~v~s~~Vi~ 452 (509)
.....|+...+...+ ..+...+|+|+|+..++.. .+||....... .....+.||||||+++... ..+..+.+..
T Consensus 226 ~~~~~g~~~~~~~~~~~~ll~~~l~D~~r~~~p~~~~~~T~~~~~~~~-~~~~~~~rID~il~s~~~~--~~v~~~~v~~ 302 (318)
T 1hd7_A 226 NKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNA-RSKNVGWRLDYFLLSHSLL--PALCDSKIRS 302 (318)
T ss_dssp HTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCTTCCSBCCSGGGH-HHHTCCBCCEEEEECGGGG--GGEEEEEECT
T ss_pred cCCCCCcCHHHHHHHHHHHhhCCCEEeehhhCCCCCCCcceECCcCCC-cccCCceEEEEEEECHHHH--hhhhheEeec
Confidence 111223322222333 3444559999998776532 25554321100 0123478999999998731 1256888876
Q ss_pred CCCCCCccceEEEEEe
Q 010500 453 SKGTSDHHIVKVDITK 468 (509)
Q Consensus 453 ~~~~SDH~PV~adf~L 468 (509)
...+|||+||+++|.+
T Consensus 303 ~~~~SDH~Pv~~~l~l 318 (318)
T 1hd7_A 303 KALGSDHCPITLYLAL 318 (318)
T ss_dssp TCCSSSBCCEEEEECC
T ss_pred cCCCCCccCEEEEecC
Confidence 5568999999999864
No 19
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.89 E-value=4.5e-23 Score=203.87 Aligned_cols=222 Identities=18% Similarity=0.132 Sum_probs=133.3
Q ss_pred HHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHhCC-cEEEec-c-CCCCceeEEEEeccceeeeEeeec---CCCCC
Q 010500 230 VLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGM-NYVFAE-S-WAPEYGNAVLSKWPIKRWKVQKIF---DDTDF 303 (509)
Q Consensus 230 I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~lG~-~~~f~~-s-~~g~~GvAILSR~PI~~~~~~~l~---~~~~~ 303 (509)
|+++|++.+||||||||+........ ..|....|| +.++.. . ..+.+|++||||+|+..... .++ .+.+.
T Consensus 47 i~~~i~~~~~DIi~LQE~~~~~~~~~---~~l~~~~gy~~~~~~~~~~~~g~~Gvailsr~~~~~~~~-~~~~~~~~~~~ 122 (285)
T 2o3h_A 47 GLDWVKEEAPDILCLQETKCSENKLP---AELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCPLKVSY-GIGDEEHDQEG 122 (285)
T ss_dssp HHHHHHHHCCSEEEEECCCCCTTSCC---GGGGGCGGGCEEEEECBC--CCSCCEEEEESSCCSEEEE-SCSCGGGSSBC
T ss_pred HHHHHHhcCCCEEEEEEeecchhhcc---HHHHhccCCcEEEEecccCCcccceEEEEEccChHHeee-ccCCcccCCCC
Confidence 89999999999999999986632211 124334577 444443 1 23567999999999665432 121 12345
Q ss_pred ceEEEEEEEeCCccEEEEEEecCCCCCh-----HHHHHHHHHHHHHcC---CCCcEEEEecCCCCCCCCCcchhhhhHHH
Q 010500 304 RNVLKATVDVPQIGEVNFHCTHLDHLDE-----NWRMKQMNAIIQSND---HGEAHILAGALNSLDETDYSSERWTDIVK 375 (509)
Q Consensus 304 R~~L~a~l~~~g~~~L~VintHL~~~~~-----~~R~~Q~~~L~~~L~---~~~PvIL~GDFNs~p~s~~~~~~~~~i~~ 375 (509)
| ++.+.+ +.+.|+++|+++... ..|..|++.|.+.+. ...|+|||||||+.+...+ .|... .
T Consensus 123 r-~l~~~~-----~~~~v~~~h~p~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~p~Il~GDFN~~~~~~D---~~~~~-~ 192 (285)
T 2o3h_A 123 R-VIVAEF-----DSFVLVTAYVPNAGRGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEID---LRNPK-G 192 (285)
T ss_dssp C-EEEEEC-----SSCEEEEEECCCCCGGGTTHHHHHHHHHHHHHHHHHHHTTSCEEEEEECSCCCSGGG---BSCTT-T
T ss_pred c-EEEEEe-----CCEEEEEEEcCCCCCcchhHHHHHHHHHHHHHHHHhhccCCCEEEEEECCCCCchhh---ccChh-h
Confidence 5 333332 569999999986332 236677777776653 3589999999998764310 00000 0
Q ss_pred hhhhcCCCChhHHHH-HHHhhCCceecccccCCCc--ceeEecCCccccCCCCCCCceEEEEeCCCCCCceeeeEEEEcC
Q 010500 376 YYEEMGKPTPKVEVM-KFLKSKQYTDSKDFAGECE--SVVMIAKGQSVQGTCKYGTRVDYILASPNSPYKFVPGSYSVFS 452 (509)
Q Consensus 376 ~~~~~G~~~~~~~~~-~~L~~~glvDa~~~~~~~~--~tT~~~~g~~~~~t~~~~~RIDyIf~S~~~~~kl~v~s~~Vi~ 452 (509)
.....|....+...+ ..+...+|+|+|+..++.. .+||....... .....+.||||||+++... ..+..+.+..
T Consensus 193 ~~~~~g~~~~~~~~~~~~~l~~~l~D~~~~~~~~~~~~~T~~~~~~~~-~~~~~~~rID~i~~s~~~~--~~v~~~~v~~ 269 (285)
T 2o3h_A 193 NKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNA-RSKNVGWRLDYFLLSHSLL--PALCDSKIRS 269 (285)
T ss_dssp CTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCCSCCSBCCSSTTH-HHHTCCBCCEEEEECGGGG--GGEEEEEECT
T ss_pred cCCCCCcCHHHHHHHHHHHhcCCCEEEEEecCCCCCCcEeEecCcCCc-cccCceeEEEEEEECHHHH--hhhhheEeec
Confidence 000112211122232 3333459999998776532 25564321100 0113467999999998731 1267888887
Q ss_pred CCCCCCccceEEEEEe
Q 010500 453 SKGTSDHHIVKVDITK 468 (509)
Q Consensus 453 ~~~~SDH~PV~adf~L 468 (509)
....|||+||+++|.+
T Consensus 270 ~~~~SDH~pv~~~l~l 285 (285)
T 2o3h_A 270 KALGSDHCPITLYLAL 285 (285)
T ss_dssp TCCSSSBCCEEEEECC
T ss_pred cCCCCCeecEEEEecC
Confidence 5568999999999864
No 20
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.88 E-value=9e-23 Score=207.14 Aligned_cols=139 Identities=18% Similarity=0.175 Sum_probs=99.7
Q ss_pred cccHHHHHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHhCCcEE-EeccCC--------------CCceeEEEEecc
Q 010500 224 VGSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYV-FAESWA--------------PEYGNAVLSKWP 288 (509)
Q Consensus 224 ~~r~~~I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~lG~~~~-f~~s~~--------------g~~GvAILSR~P 288 (509)
..+.+.|..+|...+|||||||||...... ..++..|.+.++|.+. ++.... ...|++||||+|
T Consensus 51 ~~R~~~i~~~~~~~~pDIv~LQEv~~~~~~-~~l~~~L~~~~py~~~~~g~~~~~~~~~~~~y~~~~~~~~G~~ilSr~P 129 (317)
T 3i41_A 51 YKRADLIGQSSYIKNNDVVIFNEAFDNGAS-DKLLSNVKKEYPYQTPVLGRSQSGWDKTEGSYSSTVAEDGGVAIVSKYP 129 (317)
T ss_dssp HHHHHHHHHCSTTSSCSEEEEEEECSHHHH-HHHHHHTTTTCCEECCCTTSCSTTCSEEEESCCSSCSBCCCCEEEESSC
T ss_pred HHHHHHHHHHhhccCCCEEEEEeeccHHHH-HHHHHHHHHhCCcccccCCccccCccCcccccccccccCCccEEEeCCC
Confidence 345677788888899999999999764211 1122334333443221 111100 015999999999
Q ss_pred ceeeeEeeecCC-----CCCceEEEEEEEeCCccEEEEEEecCCCCC--------hHHHHHHHHHHHHHcC-----CCCc
Q 010500 289 IKRWKVQKIFDD-----TDFRNVLKATVDVPQIGEVNFHCTHLDHLD--------ENWRMKQMNAIIQSND-----HGEA 350 (509)
Q Consensus 289 I~~~~~~~l~~~-----~~~R~~L~a~l~~~g~~~L~VintHL~~~~--------~~~R~~Q~~~L~~~L~-----~~~P 350 (509)
+.....+.++.. ...|+++.+++.++| ..|.|+|+||.+.. ...|..|++.|.+++. .+.|
T Consensus 130 i~~~~~~~~~~~~~~d~~~~r~~~~~~i~~~g-~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~~~~~~~~~p 208 (317)
T 3i41_A 130 IKEKIQHVFKSGCGFDNDSNKGFVYTKIEKNG-KNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVKKKNIPKDET 208 (317)
T ss_dssp EEEEEEEECSCCCSSGGGBCCEEEEEEEEETT-EEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHHHHTCCTTSC
T ss_pred CccceeEECCCCCCcccccCcceEEEEEEECC-EEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHHHhccCCCCe
Confidence 998887777642 346889999999987 89999999998643 5689999999988763 4689
Q ss_pred EEEEecCCCCCCCC
Q 010500 351 HILAGALNSLDETD 364 (509)
Q Consensus 351 vIL~GDFNs~p~s~ 364 (509)
+|||||||+.+.+.
T Consensus 209 vIl~GDfN~~~~s~ 222 (317)
T 3i41_A 209 VYIGGDLNVNKGTP 222 (317)
T ss_dssp EEEEEECCCCTTSH
T ss_pred EEEEeECCCCCCCH
Confidence 99999999998764
No 21
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.87 E-value=2.4e-21 Score=188.07 Aligned_cols=214 Identities=12% Similarity=0.071 Sum_probs=130.2
Q ss_pred CCCCCcccHHHHHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHhCCcEEEecc-CCCCceeEEEEec-cceeeeEee
Q 010500 219 SSIASVGSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAES-WAPEYGNAVLSKW-PIKRWKVQK 296 (509)
Q Consensus 219 ~~~~~~~r~~~I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~lG~~~~f~~s-~~g~~GvAILSR~-PI~~~~~~~ 296 (509)
|......+.+.++++|++.+||||||||++...... +....||.+++... ..+.+|+|||++. ++.. ..
T Consensus 26 Nv~~~~~~~~~l~~~i~~~~~DIv~lQE~~~~~~~~------~~~~~gy~~~~~~~~~~~~~GvaIl~~~~~~~~---~~ 96 (245)
T 1wdu_A 26 NLQRKKLATAELAIEAATRKAAIALIQEPYVGGAKS------MKGFRGVRVFQSTAQGDGTVKAAIAVFDHDLDV---IQ 96 (245)
T ss_dssp ECTTCHHHHHHHHHHHHHHTCSEEEEESCCC------------CCCSSCEEEECCCCTTCCCCEEEEECCSSCEE---EE
T ss_pred eccccHHHHHHHHHHHhhcCCCEEEEEcccccCCcc------ccCCCcceEeccccccCCCCCeEEEEECCCcce---EE
Confidence 333344567899999999999999999997653221 11124665433221 2346799999953 4432 12
Q ss_pred ecCCCCCceEEEEEEEeCCccEEEEEEecCCCCC-hHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcchhhhhHHH
Q 010500 297 IFDDTDFRNVLKATVDVPQIGEVNFHCTHLDHLD-ENWRMKQMNAIIQSNDHGEAHILAGALNSLDETDYSSERWTDIVK 375 (509)
Q Consensus 297 l~~~~~~R~~L~a~l~~~g~~~L~VintHL~~~~-~~~R~~Q~~~L~~~L~~~~PvIL~GDFNs~p~s~~~~~~~~~i~~ 375 (509)
++ ....++++.+.+..++ +.+.|+++|+++.. ......++..+++.+ ...|+|||||||+.+.. |...
T Consensus 97 ~~-~~~~~~~~~~~i~~~~-~~~~v~~vy~p~~~~~~~~~~~l~~~~~~~-~~~~~Ii~GDfN~~~~~------~~~~-- 165 (245)
T 1wdu_A 97 YP-QLTTNNIVVVGIRTRA-WEITLVSYYFEPDKPIESYLEQIKRVERKM-GPKRLIFGGDANAKSTW------WGSK-- 165 (245)
T ss_dssp CT-TTCCSSEEEEEEECSS-CEEEEEEEECCTTSCSHHHHHHHHHHHHTT-CSSSEEEEEECCCCCGG------GTCS--
T ss_pred ec-ccccCCEEEEEEEcCC-CcEEEEEEEeCCCCCHHHHHHHHHHHHHHh-CCCcEEEEeccccCccc------CCCC--
Confidence 22 2345667888888876 88999999998632 234556777777665 45799999999987642 2100
Q ss_pred hhhhcCCCChh-HHHHHHHhhCCceecccccCCCcceeEe-cCCccccCCCCCCCceEEEEeCCCCCCceeeeEEEEcCC
Q 010500 376 YYEEMGKPTPK-VEVMKFLKSKQYTDSKDFAGECESVVMI-AKGQSVQGTCKYGTRVDYILASPNSPYKFVPGSYSVFSS 453 (509)
Q Consensus 376 ~~~~~G~~~~~-~~~~~~L~~~glvDa~~~~~~~~~tT~~-~~g~~~~~t~~~~~RIDyIf~S~~~~~kl~v~s~~Vi~~ 453 (509)
..... ..+.+++...++... ++...+||. ..+ ....+.||||||+++.... .+..+.+...
T Consensus 166 ------~~~~~~~~l~~~~~~~~l~~~----~~~~~~T~~~~~~-----~~~~~~rID~i~~s~~~~~--~v~~~~v~~~ 228 (245)
T 1wdu_A 166 ------EDDARGDQLMGTLGELGLHIL----NEGDVPTFDTIRG-----GKRYQSRVDVTFCTEDMLD--LIDGWRVDED 228 (245)
T ss_dssp ------SCCHHHHHHHHHHHHHTCEEC----CCSCCCSEEC----------CCEECCEEEEECGGGBT--TEEEEEECTT
T ss_pred ------CcCcchHHHHHHHHHCCcEEe----cCCCCCcEECCCC-----CCCCCCEEEEEEeChHHHh--hccceEEcCC
Confidence 00111 123344444455432 222223443 221 1123689999999987311 4567888765
Q ss_pred CCCCCccceEEEEEec
Q 010500 454 KGTSDHHIVKVDITKA 469 (509)
Q Consensus 454 ~~~SDH~PV~adf~L~ 469 (509)
..+|||+||+++|.++
T Consensus 229 ~~~SDH~Pv~~~l~l~ 244 (245)
T 1wdu_A 229 LVSSDHNGMVFNIRLQ 244 (245)
T ss_dssp SSSSSBCCEEEEECCC
T ss_pred CCCCCcccEEEEEEeC
Confidence 6899999999999864
No 22
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.83 E-value=3.8e-22 Score=224.42 Aligned_cols=224 Identities=16% Similarity=0.133 Sum_probs=45.5
Q ss_pred cccHHHHHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHhCCcEEEecc----------CCCCceeEEE---Eeccce
Q 010500 224 VGSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAES----------WAPEYGNAVL---SKWPIK 290 (509)
Q Consensus 224 ~~r~~~I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~lG~~~~f~~s----------~~g~~GvAIL---SR~PI~ 290 (509)
..+...|+++|.+++|||||||||+...... .+..+...+||.++|... .....|+||+ +||++.
T Consensus 424 ~~R~~~i~~~I~~~~pDIIcLQEV~~~~~~~--~l~~~l~~~gY~~~~~~~~~~~~~~~~~~~~~~G~AI~y~~srf~l~ 501 (727)
T 4b8c_D 424 DYRRNKLKEQILSYDSDLLCLQEVESKTFEE--YWVPLLDKHGYTGIFHAKARAKTMHSKDSKKVDGCCIFFKRDQFKLI 501 (727)
T ss_dssp HHHHHHHHHHHHHSCCSSEEEC-CCHHHHHT--TTCC-------CEEC----------------CCCCEEEC--------
T ss_pred hhhhhHHHHHHHHcCCCeEEEEecCHHHHHH--HHHHHHHhCCccEEEeccCCcccccccCCCCcccEEEEEEcccceEe
Confidence 3467899999999999999999997542111 111122357887766321 1246799999 899999
Q ss_pred eeeEeeecCC------------------CCCceEEEEEEEeC-CccEEEEEEecCCCC--ChHHHHHHHHHHHHHcC---
Q 010500 291 RWKVQKIFDD------------------TDFRNVLKATVDVP-QIGEVNFHCTHLDHL--DENWRMKQMNAIIQSND--- 346 (509)
Q Consensus 291 ~~~~~~l~~~------------------~~~R~~L~a~l~~~-g~~~L~VintHL~~~--~~~~R~~Q~~~L~~~L~--- 346 (509)
....+.+... ...|.++++.++.. .|..|.|+||||++. ..+.|..|+..|++++.
T Consensus 502 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~~~~l~~~~~g~~l~V~ntHL~~~p~~~~~R~~Qa~~l~~~l~~~~ 581 (727)
T 4b8c_D 502 TKDAMDFSGAWMKHKKFQRTEDYLNRAMNKDNVALFLKLQHIPSGDTIWAVTTHLHWDPKFNDVKTFQVGVLLDHLETLL 581 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeEEeechhhhhchhhcccHHHHhhcccCCcEEEEEEEeecCCCceEEEEEeccccCCCCCchHHHHHHHHHHHHHHHH
Confidence 8776665321 01245666666643 257899999999973 45678899988877663
Q ss_pred ------------CCCcEEEEecCCCCCCCCCcchhhhhHHHhhhhcCCCChhHHH----HHHH------hhCCceecccc
Q 010500 347 ------------HGEAHILAGALNSLDETDYSSERWTDIVKYYEEMGKPTPKVEV----MKFL------KSKQYTDSKDF 404 (509)
Q Consensus 347 ------------~~~PvIL~GDFNs~p~s~~~~~~~~~i~~~~~~~G~~~~~~~~----~~~L------~~~glvDa~~~ 404 (509)
.+.|+|||||||+.|++. .|..+.. |....+.+. ...+ ....+.++|..
T Consensus 582 ~~~~~~~~~~~~~~~pvIl~GDFNs~P~s~----~~~~l~~-----~~v~~~~d~~~~~~~~~~~~~~~~~~~l~say~~ 652 (727)
T 4b8c_D 582 KEETSHNFRQDIKKFPVLICGDFNSYINSA----VYELINT-----GRVQIHQEGNGRDFGYMSEKNFSHNLALKSSYNC 652 (727)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcccccccccCCCceEEecccCCCCCCc----ceEeeec-----CCcCcchhhccccccccccccccccccccchhhc
Confidence 246899999999999875 2222211 100000000 0000 01123455543
Q ss_pred cCCCcceeEecCCccccCCCCCCCceEEEEeCCCCCCceeeeEE-EEc------------CCCCCCCccceEEEEEecC
Q 010500 405 AGECESVVMIAKGQSVQGTCKYGTRVDYILASPNSPYKFVPGSY-SVF------------SSKGTSDHHIVKVDITKAQ 470 (509)
Q Consensus 405 ~~~~~~tT~~~~g~~~~~t~~~~~RIDyIf~S~~~~~kl~v~s~-~Vi------------~~~~~SDH~PV~adf~L~~ 470 (509)
.+....+.| +..+..+|||||++++. +.+... .++ ...++|||+||+|+|.+.+
T Consensus 653 ~~~~~~T~~---------~~~~~~~LDyI~~S~~~---l~~~~~~~~~~~~~~~~~~~~P~~~~pSDH~pV~a~f~l~~ 719 (727)
T 4b8c_D 653 IGELPFTNF---------TPSFTDVIDYIWFSTHA---LRVRGLLGEVDPEYVSKFIGFPNDKFPSDHIPLLARFEFMK 719 (727)
T ss_dssp ---CCCSBC---------CSSCCBCC--------------------CCCHHHHTTCSSSSBTTBCSSBCC---------
T ss_pred CCCCccccc---------cCccCCeeeeEEEcCCc---eeEeeccCCCCHHHhcccCCCCCCCCCCCceeEEEEEEEec
Confidence 222221222 12245679999999863 222222 111 1125799999999999987
No 23
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.81 E-value=2e-19 Score=189.02 Aligned_cols=139 Identities=17% Similarity=0.180 Sum_probs=96.9
Q ss_pred cccHHHHHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHhCCcEEEecc-C---------CCCceeEEEEe---ccce
Q 010500 224 VGSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAES-W---------APEYGNAVLSK---WPIK 290 (509)
Q Consensus 224 ~~r~~~I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~lG~~~~f~~s-~---------~g~~GvAILSR---~PI~ 290 (509)
..+...|+++|..++|||||||||...... ......|. .+||.++|... . .+..|+||+.| +.+.
T Consensus 61 ~~R~~~i~~~i~~~~pDIi~lQEv~~~q~~-~~l~~~L~-~~gY~~v~~~k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll 138 (398)
T 3ngq_A 61 EYRKKGIMEEIVNCDADIISLQEVETEQYF-TLFLPALK-ERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLV 138 (398)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEEEEEHHHHH-HTHHHHHH-HTTEEEEEEESCTTSCCCHHHHHTCEEEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEecccHHHHH-HHHHHHHH-hCCceEEEecCCCccccccccccCcceeEEEEECCcceEE
Confidence 346789999999999999999999754210 01123343 57888776532 1 24679999955 7888
Q ss_pred eeeEeeecC-------C-------CCC--ceEEEEEEEeC--------------CccEEEEEEecCCC--CChHHHHHHH
Q 010500 291 RWKVQKIFD-------D-------TDF--RNVLKATVDVP--------------QIGEVNFHCTHLDH--LDENWRMKQM 338 (509)
Q Consensus 291 ~~~~~~l~~-------~-------~~~--R~~L~a~l~~~--------------g~~~L~VintHL~~--~~~~~R~~Q~ 338 (509)
....+.++. + ... ..++.+.++.. .++.|.|+||||.+ .....|..|+
T Consensus 139 ~~~~i~ls~~~~~~s~~~~~~~~Ri~t~~nval~~~L~~~~~~~~~~~~~~~~~~~~~l~V~nTHL~~~p~~~~vRl~Q~ 218 (398)
T 3ngq_A 139 QKHTVEFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLIVANAHMHWDPEYSDVKLIQT 218 (398)
T ss_dssp EEEEEEHHHHHHHTCTTCHHHHHTTTTCCCEEEEEEEEECGGGC-----------CCEEEEEEEECCCCTTCHHHHHHHH
T ss_pred eeeEEecCCCcccccccchhhhcceeeccceeEEEEEEEcccccccccccccCCCCcEEEEEEeCcCCCCCCHHHHHHHH
Confidence 887777742 1 011 12345555542 13679999999997 4578999999
Q ss_pred HHHHHHcC-----------------CCCcEEEEecCCCCCCCC
Q 010500 339 NAIIQSND-----------------HGEAHILAGALNSLDETD 364 (509)
Q Consensus 339 ~~L~~~L~-----------------~~~PvIL~GDFNs~p~s~ 364 (509)
..|++.+. ...|+|||||||+.|++.
T Consensus 219 ~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs~P~s~ 261 (398)
T 3ngq_A 219 MMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDSG 261 (398)
T ss_dssp HHHHHHHHHHHCC-------------CCCEEEEEECSCCTTSH
T ss_pred HHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCCCCCCH
Confidence 99887652 236899999999999875
No 24
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.79 E-value=8.7e-19 Score=171.68 Aligned_cols=198 Identities=11% Similarity=0.154 Sum_probs=120.3
Q ss_pred cccHHHHHHHHHccCCcEEEEcCccCCcccCCChHHHHHHHhCCcEEEeccCCCCceeEEEEeccceeeeEeeecCCCCC
Q 010500 224 VGSTRTVLEVLRELDADLLALQDVKAEEENSMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRWKVQKIFDDTDF 303 (509)
Q Consensus 224 ~~r~~~I~e~I~e~dpDVI~LQEV~~~~~~~~~~l~~La~~lG~~~~f~~s~~g~~GvAILSR~PI~~~~~~~l~~~~~~ 303 (509)
..+.+.+.++|++.+||||||||++.. .||. +++ ....|+||+++.+....... .. ...
T Consensus 19 r~~~~~l~~~l~~~~~DIl~LQEt~~~--------------~gy~-~~~---~~~~gvail~~~~~~~~~~~--~~-~~~ 77 (240)
T 2ei9_A 19 EDATRELPSIARDLGLDIVLVQEQYSM--------------VGFL-AQC---GAHPKAGVYIRNRVLPCAVL--HH-LSS 77 (240)
T ss_dssp HHHHHTHHHHHHHHTCSEEEEESCCTT--------------SSSE-ECC---SSSCSEEEEESSTTSCEEEC--GG-GCC
T ss_pred HHHHHHHHHHHHHcCCCEEEeecceEc--------------CCce-Eec---cCCCCEEEEEecCCcceeee--cc-cCC
Confidence 445677999999999999999999621 2454 222 24679999998754332221 11 112
Q ss_pred ceEEEEEEEeCCccEEEEEEecCCCC-ChHHHHHHHHHHHHHcCCCCcEEEEecCCCCCCCCCcchhhhhHHHhhhhcCC
Q 010500 304 RNVLKATVDVPQIGEVNFHCTHLDHL-DENWRMKQMNAIIQSNDHGEAHILAGALNSLDETDYSSERWTDIVKYYEEMGK 382 (509)
Q Consensus 304 R~~L~a~l~~~g~~~L~VintHL~~~-~~~~R~~Q~~~L~~~L~~~~PvIL~GDFNs~p~s~~~~~~~~~i~~~~~~~G~ 382 (509)
+....+.++ . +.++|+|+|++.. .......+++.|...+. ..++|||||||+.+.. |.....- . +.
T Consensus 78 ~~~~~i~i~--~-~~i~i~svY~P~~~~~~~~~~~l~~l~~~~~-~~~~Ii~GDfN~~~~~------w~~~~~~--~-~~ 144 (240)
T 2ei9_A 78 THITVVHIG--G-WDLYMVSAYFQYSDPIDPYLHRLGNILDRLR-GARVVICADTNAHSPL------WHSLPRH--Y-VG 144 (240)
T ss_dssp SSEEEEEET--T-TTEEEEEEECCTTSCSHHHHHHHHHHHHHTT-TSCEEEEEECCCCCGG------GTCCHHH--H-SS
T ss_pred CCEEEEEEe--e-ccEEEEEEEcCCCCchhHHHHHHHHHHHhcC-CCcEEEEEeccccccc------ccCCCCC--C-CC
Confidence 333444443 3 5699999999863 34556677777776664 3799999999988642 3321110 0 11
Q ss_pred CChhH-HHHHHHhhCCceecccc--cCC-CcceeEecCCccccCCCCCCCceEEEEeCCCCCCceeeeEEEEcCCCCCCC
Q 010500 383 PTPKV-EVMKFLKSKQYTDSKDF--AGE-CESVVMIAKGQSVQGTCKYGTRVDYILASPNSPYKFVPGSYSVFSSKGTSD 458 (509)
Q Consensus 383 ~~~~~-~~~~~L~~~glvDa~~~--~~~-~~~tT~~~~g~~~~~t~~~~~RIDyIf~S~~~~~kl~v~s~~Vi~~~~~SD 458 (509)
....+ ...+.|. +|.|+++. .++ ...+||... ..++||||||+++.. ....+.+.+ ..+||
T Consensus 145 ~~~~r~~~~~~l~--~~~d~~~l~~~~~~~~~~T~~s~--------~~~~rID~~l~s~~l----~~~~~~i~~-~~~SD 209 (240)
T 2ei9_A 145 RGQEVADRRAKME--DFIGARRLVVHNADGHLPTFSTA--------NGESYVDVTLSTRGV----RVSEWRVTN-ESSSD 209 (240)
T ss_dssp SCHHHHHHHHHHH--HHHHHTTCEECCCTTCCCSEEET--------TEEECCEEEEECTTC----CEEEEEECS-CCSSS
T ss_pred cchhhHHHHHHHH--HHHHhcCCEecCCCCCCceEeCC--------CCceEEEEEEecCcc----ccCCeEECC-CCCCC
Confidence 11111 1223332 56666653 244 223444321 126899999999984 335556554 67999
Q ss_pred ccceEEEEEecC
Q 010500 459 HHIVKVDITKAQ 470 (509)
Q Consensus 459 H~PV~adf~L~~ 470 (509)
|.||+++|....
T Consensus 210 H~Pv~~~l~~~~ 221 (240)
T 2ei9_A 210 HRLIVFGVGGGT 221 (240)
T ss_dssp BCCEEEEEEC--
T ss_pred cccEEEEECCCC
Confidence 999999998765
No 25
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.77 E-value=2.7e-19 Score=175.91 Aligned_cols=192 Identities=16% Similarity=0.140 Sum_probs=123.9
Q ss_pred HHHHHHHHccC-CcEEEEcCccCCc-----------ccCCChHHHHHHHhC------CcEEEeccC---CCCceeEEEEe
Q 010500 228 RTVLEVLRELD-ADLLALQDVKAEE-----------ENSMKPLSDLAAALG------MNYVFAESW---APEYGNAVLSK 286 (509)
Q Consensus 228 ~~I~e~I~e~d-pDVI~LQEV~~~~-----------~~~~~~l~~La~~lG------~~~~f~~s~---~g~~GvAILSR 286 (509)
..|.++|+..+ +|||+|||+..-. ..+.+ ..++...+| +.|.|.... .+.+|+||+||
T Consensus 36 ~~v~~lI~~~~~~DIvaLQEag~~p~sa~~t~R~~~~~g~~-v~E~~w~lGt~srp~~~yiY~~~~D~~~~r~nlAIlSr 114 (262)
T 2f1n_A 36 INVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIP-VRELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSN 114 (262)
T ss_dssp THHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCC-CEEEEEECCSSSSSCEEEEEEECSCSSSCSSCEEEEES
T ss_pred ccHHHHHccCCCCCEEEEeecCCcCcccccccccccCCCcC-HHHHHHHhCCCCCCceEEEEEeeccCCCCceeeEEEEc
Confidence 45777999988 9999999998441 11112 233333456 767665543 47899999999
Q ss_pred ccceeeeEeeecCC-CCCceEEEEEEEeCCccEEEEEEecCCCCChHHHHHHHHHHHHHcC--CC-----CcEEEEecCC
Q 010500 287 WPIKRWKVQKIFDD-TDFRNVLKATVDVPQIGEVNFHCTHLDHLDENWRMKQMNAIIQSND--HG-----EAHILAGALN 358 (509)
Q Consensus 287 ~PI~~~~~~~l~~~-~~~R~~L~a~l~~~g~~~L~VintHL~~~~~~~R~~Q~~~L~~~L~--~~-----~PvIL~GDFN 358 (509)
+|+.+ .+.++.. ...|.++.+++ +.+.|+++|+.+....+|..|++.+.+++. .. .|+|||||||
T Consensus 115 ~~ade--v~vLp~~~~~~Rp~lgiri-----~~~~ff~tHa~a~~g~da~a~v~~I~~~~~~~~~~~~~~~pwii~GDFN 187 (262)
T 2f1n_A 115 RRADE--VFVLSPVRQGGRPLLGIRI-----GNDAFFTAHAIAMRNNDAPALVEEVYNFFRDSRDPVHQALNWMILGDFN 187 (262)
T ss_dssp SCCSE--EEEECCSSTTCCCEEEEEE-----TTEEEEEEECCSSSSCSHHHHHHHHHHHHHTCSSHHHHTCEEEEEEECS
T ss_pred ccccc--eEECCCCCCCCCceEEEEE-----CCEEEEEEEecCCCCccHHHHHHHHHHHHhcCcccccCCCcEEEEecCC
Confidence 99985 3445432 33899999888 248999999997656668889999998874 23 4999999999
Q ss_pred CCCCCCCcchhhhhHHHhhhhcCCCChhHHHHHHHhhCCceecccccCCCcceeEecCCccccCCCCCCCceEEEEeCCC
Q 010500 359 SLDETDYSSERWTDIVKYYEEMGKPTPKVEVMKFLKSKQYTDSKDFAGECESVVMIAKGQSVQGTCKYGTRVDYILASPN 438 (509)
Q Consensus 359 s~p~s~~~~~~~~~i~~~~~~~G~~~~~~~~~~~L~~~glvDa~~~~~~~~~tT~~~~g~~~~~t~~~~~RIDyIf~S~~ 438 (509)
..|++.. .. .. ... ...+.++ .++ .+|..++.+|||+|+...
T Consensus 188 r~P~sl~----~~-----------l~------~~~-~~~~~~~----~p~------------~~T~~s~~~LDY~~~~~~ 229 (262)
T 2f1n_A 188 REPADLE----MN-----------LT------VPV-RRASEII----SPA------------AATQTSQRTLDYAVAGNS 229 (262)
T ss_dssp SCHHHHH----TT-----------SC------HHH-HHTEEEE----CCS------------SCSBTTSCCCEEEEEEES
T ss_pred CCCcchh----hh-----------hh------ccc-ccceEEc----CCC------------CCCCCCCCeEeEEEEcCC
Confidence 9987530 00 00 000 0112221 111 134556889999998853
Q ss_pred CCCcee----eeEEEEcCCCCCCCccceEEE
Q 010500 439 SPYKFV----PGSYSVFSSKGTSDHHIVKVD 465 (509)
Q Consensus 439 ~~~kl~----v~s~~Vi~~~~~SDH~PV~ad 465 (509)
..+.+. +..+.++.....|||+||...
T Consensus 230 ~~~~~~~~~a~~~~~~l~~~~aSDH~PV~~~ 260 (262)
T 2f1n_A 230 VAFRPSPLQAGIVYGARRTQISSDHFPVGVS 260 (262)
T ss_dssp SCCCCCCCEEEETTTTSCCCCSCSBCCEEEE
T ss_pred ccccccchhhhhhhhhhccCcCCCccceeec
Confidence 322211 223334545568999999864
No 26
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.73 E-value=1.6e-17 Score=166.64 Aligned_cols=248 Identities=11% Similarity=0.070 Sum_probs=130.9
Q ss_pred eeecCCCCCcccHHHHHHHHHccCCcE--EEEcCccCCcccC---CChHHHHHHHhC-CcEEE-eccCCCCceeEEE--E
Q 010500 215 SFPTSSIASVGSTRTVLEVLRELDADL--LALQDVKAEEENS---MKPLSDLAAALG-MNYVF-AESWAPEYGNAVL--S 285 (509)
Q Consensus 215 ~~~~~~~~~~~r~~~I~e~I~e~dpDV--I~LQEV~~~~~~~---~~~l~~La~~lG-~~~~f-~~s~~g~~GvAIL--S 285 (509)
+||.+......++......+.+.+||| |||||+....... ....+.|.+.++ +.|.. +....+..|++++ +
T Consensus 13 T~Nv~~~~~~~~l~~wl~~~~~~~pDI~viglQEv~~~~~~~~~~~~w~~~l~~~L~~~~Y~~v~~~~~~~~G~~l~vf~ 92 (282)
T 2imq_X 13 SWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLLTSKGYTKLKNTITETMGLTVYCLE 92 (282)
T ss_dssp EEEEETCCCCSCCHHHHTCTTSCCCSEEEEEEEESCTTTCTTCCHHHHHHHHHHHHHHTTEEEEEEEECSSEEEEEEEEG
T ss_pred EEeCCCCcCchhHHHHhcccccCCCCEEEEEeeeeccccccchhhHHHHHHHHHhcCCCceEEEEeccCceeEEEEEEEE
Confidence 344433322334444444455789995 5999997542110 011233444443 22322 2111244555554 4
Q ss_pred eccce---e-eeEeeecCCCCCceEEEEEEEeCCccEEEEEEecCCCC--ChHHHHHHHHHHHHHcC---CCCcEEEEec
Q 010500 286 KWPIK---R-WKVQKIFDDTDFRNVLKATVDVPQIGEVNFHCTHLDHL--DENWRMKQMNAIIQSND---HGEAHILAGA 356 (509)
Q Consensus 286 R~PI~---~-~~~~~l~~~~~~R~~L~a~l~~~g~~~L~VintHL~~~--~~~~R~~Q~~~L~~~L~---~~~PvIL~GD 356 (509)
|.++. . .....+......++++.+.+.+.+ ..+.|+|+||++. ....|..|++.|++.+. ...++|+|||
T Consensus 93 k~~~~~~i~~~~~~~~~g~~g~kGav~~r~~~~~-~~~~fvn~HL~~~~~~~~~R~~~~~~I~~~~~~~~~~~~vi~~GD 171 (282)
T 2imq_X 93 KHLDQNTLKNETIIVTVDDQKKSGGIVTSFTIYN-KRFSFTTSRMSDEDVTSTNTKYAYDTRLDYSKKDDPSDFLFWIGD 171 (282)
T ss_dssp GGCCTTTCCCEEEEEECSTTSCSEEEEEEEEETT-EEEEEEEEECCTTCCCTTSSSSSCCGGGCTTSSSSCCSEEEEEEE
T ss_pred ccccCccceeeeeccccccccCCceEEEEEEECC-EEEEEEEECCCCCCchHHHHHHHHHHHHHhhhccCccceEEEecc
Confidence 66542 2 222223222457899999999987 8999999999973 24567778888877653 5568999999
Q ss_pred CCCCCCCCCcchhhhhHHHhhhhcCC--CChhHHHHHHHhhCCceecccccCCCcceeEecCC-ccccCCCCCCCceEEE
Q 010500 357 LNSLDETDYSSERWTDIVKYYEEMGK--PTPKVEVMKFLKSKQYTDSKDFAGECESVVMIAKG-QSVQGTCKYGTRVDYI 433 (509)
Q Consensus 357 FNs~p~s~~~~~~~~~i~~~~~~~G~--~~~~~~~~~~L~~~glvDa~~~~~~~~~tT~~~~g-~~~~~t~~~~~RIDyI 433 (509)
||...+.+. +..+..+ ..... +...++...... ....+.|....-..+.||.+.. .....+......+|||
T Consensus 172 fN~r~~~~~-~~~~~~i----~~~~~~~l~~~DqL~~~~~-~~~f~~f~e~~i~f~PTYk~~~~~~~y~~~R~Psw~DrI 245 (282)
T 2imq_X 172 LNVRVETNA-THAKSLV----DQNNIDGLMAFDQLKKAKE-QKLFDGWTEPQVTFKPTYKFKPNTDEYDLSATPSWTDRA 245 (282)
T ss_dssp CSCCBCSCH-HHHHHHH----HTTCHHHHHTTBTHHHHHH-TTSSTTCBCCCCCSCCCBCBCTTSSCBCTTSCCBCCEEE
T ss_pred cccccCCCH-HHHHHHH----hhccHHHHhhhhHHHHhhc-cccccccccCCcCCCCCccccCCCccccccCCccccceE
Confidence 998877541 1111111 11000 000001111111 1111222222222222332221 1111111112346999
Q ss_pred EeCCCCCCceeeeEEEEcCCCCCCCccceEEEEEec
Q 010500 434 LASPNSPYKFVPGSYSVFSSKGTSDHHIVKVDITKA 469 (509)
Q Consensus 434 f~S~~~~~kl~v~s~~Vi~~~~~SDH~PV~adf~L~ 469 (509)
|+++.....+.+..|.+......|||+||.+.|.+.
T Consensus 246 l~~~~~~~~~~~~~y~~~~~~~~SDH~PV~a~f~~~ 281 (282)
T 2imq_X 246 LYKSGTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVT 281 (282)
T ss_dssp EEECSSSCCEEEEEEEECTTCCSSSSCCEEEEEEEE
T ss_pred EEecCCCCceEeeEecCCCCCCCCCcCCeEEEEEEE
Confidence 998642223788899988667899999999999874
No 27
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.73 E-value=1.8e-17 Score=164.23 Aligned_cols=128 Identities=15% Similarity=0.152 Sum_probs=86.8
Q ss_pred HHHHHHHc-cCCcEEEEcCccCCcccCCChHHHHHH-----------Hh------CCcEEEecc---CCCCceeEEEEec
Q 010500 229 TVLEVLRE-LDADLLALQDVKAEEENSMKPLSDLAA-----------AL------GMNYVFAES---WAPEYGNAVLSKW 287 (509)
Q Consensus 229 ~I~e~I~e-~dpDVI~LQEV~~~~~~~~~~l~~La~-----------~l------G~~~~f~~s---~~g~~GvAILSR~ 287 (509)
.++++|++ .+||||+|||+......... ...+.+ .+ ++.|+|... ..+.+|+||+||+
T Consensus 26 ~i~~~i~~~~~~DIlaLQEa~~~p~~~~~-~~r~~~~~g~~v~e~~w~lg~~~r~~~~yiy~~~~d~~~g~~g~AIlSR~ 104 (261)
T 1sr4_B 26 NVRQLLSGEQGADILMVQEAGSLPSSAVR-TSRVIQHGGTPIEEYTWNLGTRSRPNMVYIYYSRLDVGANRVNLAIVSRR 104 (261)
T ss_dssp HHHHHHCSTTCCSEEEEESCCSCCTTCEE-CSCCCCCSSSCCEEEEEESSCSSSCCEEEEEEECCCTTTSCSCEEEEESS
T ss_pred HHHHHHcCCCCCCEEEEecCCCCCCcccc-chhhhcccCCchhhhhhhcccccCCCceEEEEEeecCCCCccceEEEEcc
Confidence 79999999 88999999999874221100 001100 01 334444322 2467899999999
Q ss_pred cceeeeEeeecC-CCCCceEEEEEEEeCCccEEEEEEecCCCCChHHHHHHHHHHHHHcC-----CC---CcEEEEecCC
Q 010500 288 PIKRWKVQKIFD-DTDFRNVLKATVDVPQIGEVNFHCTHLDHLDENWRMKQMNAIIQSND-----HG---EAHILAGALN 358 (509)
Q Consensus 288 PI~~~~~~~l~~-~~~~R~~L~a~l~~~g~~~L~VintHL~~~~~~~R~~Q~~~L~~~L~-----~~---~PvIL~GDFN 358 (509)
|+.+......+. ..+.|+++.+++ ++ +.|+++|+......++..|+..|.+++. +. .++|||||||
T Consensus 105 ~~~~v~~l~~~~~~~~~R~~l~i~i--~g---~~f~s~Hl~~~~~~ea~~~v~~I~~~~~~~~~~~~~~~~~~ii~GDFN 179 (261)
T 1sr4_B 105 QADEAFIVHSDSSVLQSRPAVGIRI--GT---DVFFTVHALATGGSDAVSLIRNIFTTFNSSSSPPERRVYSWMVVGDFN 179 (261)
T ss_dssp CCSEEEEECCCCCSSCCCCEEEEEE--TT---EEEEEEECCTTTTTTHHHHHHHHHHHHHC---CGGGGGCEEEEEEECS
T ss_pred chhceEEcCCCCCCCcCcceEEEEE--CC---eEEEEeCCCCCCCchHHHHHHHHHHHHHhcccCCcccCCcEEEEeeCC
Confidence 987654333333 257999988854 33 9999999996444567788888888763 23 6999999999
Q ss_pred CCCC
Q 010500 359 SLDE 362 (509)
Q Consensus 359 s~p~ 362 (509)
..+.
T Consensus 180 ~~p~ 183 (261)
T 1sr4_B 180 RAPA 183 (261)
T ss_dssp SCHH
T ss_pred CChh
Confidence 8854
No 28
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.72 E-value=4.4e-17 Score=159.88 Aligned_cols=201 Identities=18% Similarity=0.183 Sum_probs=112.8
Q ss_pred HHHHHHHcc--CCcEEEEcCccCCcccCCChHHHHHHHh----C--CcEEEeccCC---CCceeEEEEecccee-eeEee
Q 010500 229 TVLEVLREL--DADLLALQDVKAEEENSMKPLSDLAAAL----G--MNYVFAESWA---PEYGNAVLSKWPIKR-WKVQK 296 (509)
Q Consensus 229 ~I~e~I~e~--dpDVI~LQEV~~~~~~~~~~l~~La~~l----G--~~~~f~~s~~---g~~GvAILSR~PI~~-~~~~~ 296 (509)
.+++.|.+. +|||||||||...... .+..|.+.+ | |.++.....+ +..++++|.|.+... .....
T Consensus 20 ~~~~~i~~~~~~~DIv~LQEv~~~~~~---~~~~l~~~L~~~~~~~y~~v~~~~~~~~~~~~~~~~ly~~~~v~~~~~~~ 96 (260)
T 2a40_B 20 TLASYIVRIVRRYDIVLIQEVRDSHLV---AVGKLLDYLNQDDPNTYHYVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQ 96 (260)
T ss_dssp HHHHHHHHHHTTCSEEEEEEECCTTSH---HHHHHHHHHTSSSTTSCEEEECCCBCSSSCCBEEEEEECTTTCEEEEEEE
T ss_pred HHHHHHHHHhccCCEEEEEEEEcCchh---HHHHHHHHHHhccCCCcEEEEcccCCCCCCcEEEEEEEcCceeEecCcee
Confidence 444444443 8999999999764211 234444443 4 4444433221 344689999866432 23333
Q ss_pred ecCC-------CCCceEEEEEEEeCC--ccEEEEEEecCCCCChHHHHHHHHHHHHH---c---CCCCcEEEEecCCCCC
Q 010500 297 IFDD-------TDFRNVLKATVDVPQ--IGEVNFHCTHLDHLDENWRMKQMNAIIQS---N---DHGEAHILAGALNSLD 361 (509)
Q Consensus 297 l~~~-------~~~R~~L~a~l~~~g--~~~L~VintHL~~~~~~~R~~Q~~~L~~~---L---~~~~PvIL~GDFNs~p 361 (509)
++.+ ...|..+.+.+..++ +.+|.|+++||++.... .|++.|.+. + ....|+|||||||+.+
T Consensus 97 ~~~~~~~~~~~~~~R~p~~~~~~~~~~~g~~~~vi~~Hl~~~~~~---~q~~~l~~~~~~~~~~~~~~~vil~GDfN~~~ 173 (260)
T 2a40_B 97 YDDGCESCGNDSFSREPAVVKFSSHSTKVKEFAIVALHSAPSDAV---AEINSLYDVYLDVQQKWHLNDVMLMGDFNADC 173 (260)
T ss_dssp CCTTSTTTHHHHCSSCCEEEEEECTTSSSSEEEEEECCCCGGGHH---HHHHHHHHHHHHHHHHHCCCCEEEEEECCCST
T ss_pred ccCCCcCCCCCceeeCCEEEEEEeCCCCCceEEEEEecCCCCCcH---HHHHHHHHHHHHHHHhCCCCCEEEEecCCCCC
Confidence 4332 124778888998764 58999999999953332 345444443 2 1458999999999987
Q ss_pred CCCCcchhhhhHHHhhhhcCCCChhHHHHHHHhhCCceecccccCCCcceeEecCCccccCCCCCCCceEEEEeCCCCCC
Q 010500 362 ETDYSSERWTDIVKYYEEMGKPTPKVEVMKFLKSKQYTDSKDFAGECESVVMIAKGQSVQGTCKYGTRVDYILASPNSPY 441 (509)
Q Consensus 362 ~s~~~~~~~~~i~~~~~~~G~~~~~~~~~~~L~~~glvDa~~~~~~~~~tT~~~~g~~~~~t~~~~~RIDyIf~S~~~~~ 441 (509)
... ....|..+ ..+...+|.+.. .....+++ .....+|||||+++....
T Consensus 174 ~~~-~~~~~~~l-----------------~~~~~~~~~~~~---~~~~~t~~----------~~~~~~lD~I~~s~~~~~ 222 (260)
T 2a40_B 174 SYV-TSSQWSSI-----------------RLRTSSTFQWLI---PDSADTTA----------TSTNCAYDRIVVAGSLLQ 222 (260)
T ss_dssp TTS-CGGGGGGC-----------------HHHHSTTEEESS---CTTCCCBS----------SSCCCCCEEEEEESHHHH
T ss_pred ccc-ccchhhhe-----------------eeeccCCceEcc---cCCCCCcc----------cCCCCCcccEEEcchHhh
Confidence 621 11234432 112233443211 11111221 123569999999986210
Q ss_pred -ceeeeEEEEcC-----------CCCCCCccceEEEE
Q 010500 442 -KFVPGSYSVFS-----------SKGTSDHHIVKVDI 466 (509)
Q Consensus 442 -kl~v~s~~Vi~-----------~~~~SDH~PV~adf 466 (509)
.+...++.|++ ....|||+||+++|
T Consensus 223 ~~~~~~~~~v~~~~~~~~~~~~~~~~~SDH~PV~~~l 259 (260)
T 2a40_B 223 SSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVTL 259 (260)
T ss_dssp HHBCTTCCEECCHHHHTTCCHHHHHHHCSBCCEEEEB
T ss_pred hcccCCCCceeehHHhcCCCHHHHhhcCCCCeEEEEe
Confidence 01113455543 12479999999987
No 29
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=99.64 E-value=2.5e-14 Score=147.74 Aligned_cols=231 Identities=16% Similarity=0.049 Sum_probs=130.1
Q ss_pred HHHHHHc---cCCcE--EEEcCccCCcccC---CCh------HHHHHHHh------CCcEEEecc-CCCCceeEEEEecc
Q 010500 230 VLEVLRE---LDADL--LALQDVKAEEENS---MKP------LSDLAAAL------GMNYVFAES-WAPEYGNAVLSKWP 288 (509)
Q Consensus 230 I~e~I~e---~dpDV--I~LQEV~~~~~~~---~~~------l~~La~~l------G~~~~f~~s-~~g~~GvAILSR~P 288 (509)
|.++|.. ..||| |||||+..-.... .+. .+.+.+.+ +..|..... .-.+.+++|++|.+
T Consensus 43 l~~~L~~~~~~~~DI~viglQEiv~l~~~~~~~~~~~~~~~w~~~i~~~L~~~~~~~~~Y~~v~s~~l~g~~L~Vfvr~~ 122 (347)
T 1i9z_A 43 LENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWESCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKES 122 (347)
T ss_dssp CHHHHSCSSSCCCSEEEEEEECSSCCC-----CCCHHHHHHHHHHHHHHHHHTCCSSCCEEEEEEEEETTEEEEEEEEGG
T ss_pred HHHHhccccCCCCCEEEEEeEEeecCchhhhcccCchhHHHHHHHHHHHHhhcccCCCceeEEEEeeccceEEEEEEehH
Confidence 6777774 67999 9999985321110 010 11233333 234432221 12456788999988
Q ss_pred ceeee-Eee---ecCC----CCCceEEEEEEEeCCccEEEEEEecCCCC--ChHHHHHHHHHHHHHcC--------CCCc
Q 010500 289 IKRWK-VQK---IFDD----TDFRNVLKATVDVPQIGEVNFHCTHLDHL--DENWRMKQMNAIIQSND--------HGEA 350 (509)
Q Consensus 289 I~~~~-~~~---l~~~----~~~R~~L~a~l~~~g~~~L~VintHL~~~--~~~~R~~Q~~~L~~~L~--------~~~P 350 (509)
+.... .+. ...+ ...++++.+.+.+.+ ..|.|+|+||.+. ....|..|+..|++.+. ...+
T Consensus 123 ~~~~i~~v~~~~v~tG~~g~~gnKGav~vr~~~~~-~~l~fvn~HLaa~~~~~~~R~~d~~~I~~~l~f~~~~~i~~~d~ 201 (347)
T 1i9z_A 123 CLPSIKNVEGTVKKTGLGGVSGNKGAVAIRFDYED-TGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGRSIFNHDY 201 (347)
T ss_dssp GGGGEEEEEEEEEECCCC----CCEEEEEEEEETT-EEEEEEEEECCCCSSCHHHHHHHHHHHHHHCCCGGGCCTTSSSE
T ss_pred hhhhccceeeeeEeccCCCccCCCceEEEEEEECC-eEEEEEEecCCCCCccHHHHHHHHHHHHHhhccCcccccccCcc
Confidence 75421 111 1122 346899999999988 8999999999863 34579999999988752 4468
Q ss_pred EEEEecCCCCCCCCCcchhhhhHHHhhhhcCCCChhHHHHHHHhhCCceecccccCCCcceeEecCC-ccccCCCCCCCc
Q 010500 351 HILAGALNSLDETDYSSERWTDIVKYYEEMGKPTPKVEVMKFLKSKQYTDSKDFAGECESVVMIAKG-QSVQGTCKYGTR 429 (509)
Q Consensus 351 vIL~GDFNs~p~s~~~~~~~~~i~~~~~~~G~~~~~~~~~~~L~~~glvDa~~~~~~~~~tT~~~~g-~~~~~t~~~~~R 429 (509)
+|+|||||...+.+. +..+..+..- ....+...++....+..+...+.|.+..-..+.||.+.. .....+ ....|
T Consensus 202 v~~~GDlNyRi~~~~-~~v~~~i~~~--~~~~Ll~~DqL~~~~~~~~~f~~f~E~~i~F~PTYK~~~~~~~yd~-s~k~R 277 (347)
T 1i9z_A 202 VVWFGDFNYRISLTY-EEVVPCIAQG--KLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIGTDIYDT-SDKHR 277 (347)
T ss_dssp EEEEEECCCCBSSCH-HHHHHHHHTT--CHHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTSSCBCC-STTCC
T ss_pred EEEecccccccCCCH-HHHHHHHhhc--cHHHhhcccHHHHHHhcCCcccccccCCCCCCCCcccCCCCccccc-ccccc
Confidence 999999997776431 1222222100 000000111222222222222223322222223332221 111111 11355
Q ss_pred e----EEEEeCCCCCCceeeeEEEEcCCCCCCCccceEEEEEecC
Q 010500 430 V----DYILASPNSPYKFVPGSYSVFSSKGTSDHHIVKVDITKAQ 470 (509)
Q Consensus 430 I----DyIf~S~~~~~kl~v~s~~Vi~~~~~SDH~PV~adf~L~~ 470 (509)
+ |+||+++. +.+..|.... ...|||.||.+.|.+.-
T Consensus 278 ~PsWcDRIL~~~~----l~~~~Y~~~~-~~~SDH~PV~a~f~~~v 317 (347)
T 1i9z_A 278 VPAWTDRILYRGE----LVPHSYQSVP-LYYSDHRPIYATYEANI 317 (347)
T ss_dssp CCBCCEEEEEESS----CEEEEEEECC-CCSSSBCCEEEEEEEEE
T ss_pred CCcccceEEEeCC----EEEEEEEecC-ccCCCcCCceeEEEEEE
Confidence 5 99999885 7788899887 67999999999999875
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=99.61 E-value=3.1e-14 Score=147.47 Aligned_cols=225 Identities=12% Similarity=0.050 Sum_probs=131.9
Q ss_pred ccCCcE--EEEcCccCCcccCCChHHHHHHHhCCcEEEeccC-CCCceeEEEEecccee----eeEeeecC----CCCCc
Q 010500 236 ELDADL--LALQDVKAEEENSMKPLSDLAAALGMNYVFAESW-APEYGNAVLSKWPIKR----WKVQKIFD----DTDFR 304 (509)
Q Consensus 236 e~dpDV--I~LQEV~~~~~~~~~~l~~La~~lG~~~~f~~s~-~g~~GvAILSR~PI~~----~~~~~l~~----~~~~R 304 (509)
+..||| |+|||+..... .....|.+.+|+.|.+..+. -+..+++|++|.++.. ........ -...+
T Consensus 55 ~~~pDI~viGlQEi~~~~~---~W~~~l~~~L~~~Y~~v~s~~l~g~~l~Vfvr~~~~~~i~~v~~~~v~tG~~g~~gNK 131 (357)
T 2xsw_A 55 DYAQDLYVIGVQEGCSDRR---EWETRLQETLGPHYVLLSSAAHGVLYMSLFIRRDLIWFCSEVECSTVTTRIVSQIKTK 131 (357)
T ss_dssp CSCCSEEEEEEESCCSCHH---HHHHHHHHHHCTTEEEEEEEEETTEEEEEEEEGGGGGGBBCCEEEEEEEEEEETTEEE
T ss_pred cCCCCEEEEEeeeccchHH---HHHHHHHHHhCCcccchhhhhhhhEEEEEEEchHHhhcCceeEecccccccccccccc
Confidence 467996 99999975421 12345777788877654332 2567889999987632 11111111 13467
Q ss_pred eEEEEEEEeCCccEEEEEEecCCCC--ChHHHHHHHHHHHHHcC--------------------CCCcEEEEecCCCCCC
Q 010500 305 NVLKATVDVPQIGEVNFHCTHLDHL--DENWRMKQMNAIIQSND--------------------HGEAHILAGALNSLDE 362 (509)
Q Consensus 305 ~~L~a~l~~~g~~~L~VintHL~~~--~~~~R~~Q~~~L~~~L~--------------------~~~PvIL~GDFNs~p~ 362 (509)
+++.+.+.+.+ ..|.|+|+||.+. ....|..++..|++.+. ....+|++||||...+
T Consensus 132 Gav~vr~~~~~-t~~~Fvn~HLaa~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~ 210 (357)
T 2xsw_A 132 GALGISFTFFG-TSFLFITSHFTSGDGKVAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLS 210 (357)
T ss_dssp EEEEEEEEETT-EEEEEEEEECCCSTTCHHHHHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBS
T ss_pred cEEEEEEEECC-eEEEEEEEccCCCCchHHHHHHHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccc
Confidence 89999999987 8999999999873 34678999999988763 1357999999999887
Q ss_pred CCCcchhhhhHHHhhhhc--C---CCChhHHHHHHHhhC-CceecccccCCCcceeEec-CCccccCCC---CCCCceEE
Q 010500 363 TDYSSERWTDIVKYYEEM--G---KPTPKVEVMKFLKSK-QYTDSKDFAGECESVVMIA-KGQSVQGTC---KYGTRVDY 432 (509)
Q Consensus 363 s~~~~~~~~~i~~~~~~~--G---~~~~~~~~~~~L~~~-glvDa~~~~~~~~~tT~~~-~g~~~~~t~---~~~~RIDy 432 (509)
..+ . ++.+..... + .+...++....+..+ .|. -|.+..-..+-||.+ .|.....+. ......|+
T Consensus 211 ~~~-~----~v~~~i~~~~~~~~~~Ll~~DQL~~~~~~g~~F~-gf~E~~I~F~PTYKy~~~t~~Ydts~k~R~PaWcDR 284 (357)
T 2xsw_A 211 GGR-T----VVDALLCQGLVVDVPALLQHDQLIREMRKGSIFK-GFQEPDIHFLPSYKFDIGKDTYDSTSKQRTPSYTDR 284 (357)
T ss_dssp SCH-H----HHHHHHC---CCCHHHHHTTBHHHHHHHHTSSST-TCBCCCCCSCCCBCBCTTSSSBCCSTTCCCCBCCEE
T ss_pred cch-H----HHHHHHhhcchhhHHHHHhcChhHHHHhcccccc-CccccCCCCCCCccccCCCccccccCCCCCCcccce
Confidence 542 1 111111100 0 000112232222222 121 122111112222222 121111111 11234499
Q ss_pred EEeCCCCCCceeeeEEEEcCCCCCCCccceEEEEEecC
Q 010500 433 ILASPNSPYKFVPGSYSVFSSKGTSDHHIVKVDITKAQ 470 (509)
Q Consensus 433 If~S~~~~~kl~v~s~~Vi~~~~~SDH~PV~adf~L~~ 470 (509)
||+.......+.+..|..+.+...|||.||.+.|.+.-
T Consensus 285 IL~~~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~v 322 (357)
T 2xsw_A 285 VLYRSRHKGDICPVSYSSCPGIKTSDHRPVYGLFRVKV 322 (357)
T ss_dssp EEEEESSTTSEEEEEEEECTTCCSSSSCCEEEEEEEEC
T ss_pred EEEecCCCCceEEEEeEecccccCCCcCCceeEEEEEE
Confidence 99986432337788898877678999999999999976
No 31
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=99.30 E-value=2.6e-10 Score=115.73 Aligned_cols=234 Identities=13% Similarity=0.026 Sum_probs=127.1
Q ss_pred HHHHHHHc--cCCc--EEEEcCccCCcccC--CC------hHHHHHHHhCC--cEEEecc-CCCCceeEEEEeccc----
Q 010500 229 TVLEVLRE--LDAD--LLALQDVKAEEENS--MK------PLSDLAAALGM--NYVFAES-WAPEYGNAVLSKWPI---- 289 (509)
Q Consensus 229 ~I~e~I~e--~dpD--VI~LQEV~~~~~~~--~~------~l~~La~~lG~--~~~f~~s-~~g~~GvAILSR~PI---- 289 (509)
.+.++|.. ..|| ||||||+....... .+ -...+.+.++. .|..-.+ .-.+.-+.|+.|..+
T Consensus 25 ~l~~wL~~~~~~pDI~viGlQE~~l~~~~~~~~~~~~~~~W~~~i~~~L~~~~~Y~~v~s~~lvGl~l~Vfvr~~~~~~i 104 (313)
T 3mtc_A 25 CLRLWLSNGIQAPDVYCVGFQELDLSKEAFFFHDTPKEEEWFKAVSEGLHPDAKYAKVKLIRLVGIMLLLYVKQEHAAYI 104 (313)
T ss_dssp CTHHHHSSSCCCCSEEEEEEECSCCSHHHHTTCCCHHHHHHHHHHHHHSCTTSCEEEEEEEEETTEEEEEEEEGGGGGGE
T ss_pred hHHHHhcccCCCCCeEEEEEEecccchhhhcccCcchHHHHHHHHHHhcCCCCCEEEEEEechhhhhhhhhhhhhhhhhc
Confidence 35667765 6799 79999996432110 00 01224445542 2322211 012233456667443
Q ss_pred eeeeEeeecCC----CCCceEEEEEEEeCCccEEEEEEecCCCC--ChHHHHHHHHHHHHHcC--------------CCC
Q 010500 290 KRWKVQKIFDD----TDFRNVLKATVDVPQIGEVNFHCTHLDHL--DENWRMKQMNAIIQSND--------------HGE 349 (509)
Q Consensus 290 ~~~~~~~l~~~----~~~R~~L~a~l~~~g~~~L~VintHL~~~--~~~~R~~Q~~~L~~~L~--------------~~~ 349 (509)
..........+ ...++++.+.+.+.+ ..+.|+|+||.+. ....|..+...|++.+. ...
T Consensus 105 ~~v~~~~v~tG~~g~~GNKGaV~ir~~~~~-ts~cFVnsHLaA~~~~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d 183 (313)
T 3mtc_A 105 SEVEAETVGTGIMGRMGNKGGVAIRFQFHN-TSICVVNSHLAAHIEEYERRNQDYKDICSRMQFCQPDPSLPPLTISNHD 183 (313)
T ss_dssp EEEEEEEEECSGGGTSTTSEEEEEEEEETT-EEEEEEEEECCCSGGGHHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSS
T ss_pred ceeEeeeecccccccccCCceEEEEEEECC-cEEEEEeeccCCCchHHHHHHHHHHHHHHhcccCCCCCccCCccccCCc
Confidence 22222222222 347899999999988 8999999999862 34578889999988762 123
Q ss_pred cEEEEecCCCCCCCCCcchhhhhHHHhhhhc--CCCChhHHHHHHHhhCCceecccccCCCcceeEec-CCccccCCC--
Q 010500 350 AHILAGALNSLDETDYSSERWTDIVKYYEEM--GKPTPKVEVMKFLKSKQYTDSKDFAGECESVVMIA-KGQSVQGTC-- 424 (509)
Q Consensus 350 PvIL~GDFNs~p~s~~~~~~~~~i~~~~~~~--G~~~~~~~~~~~L~~~glvDa~~~~~~~~~tT~~~-~g~~~~~t~-- 424 (509)
.+|++||||........+ ++.+..... ..+...++....+..+....-|.+..-..+-||-+ .|.....+.
T Consensus 184 ~vfw~GDLNyRi~~~~~~----~v~~~i~~~~~~~Ll~~DQL~~~~~~g~~f~gf~E~~I~F~PTYKyd~~s~~ydts~k 259 (313)
T 3mtc_A 184 VILWLGDLNYRIEELDVE----KVKKLIEEKDFQMLYAYDQLKIQVAAKTVFEGFTEGELTFQPTYKYDTGSDDWDTSEK 259 (313)
T ss_dssp EEEEEEECCCCBCSSCHH----HHHHHHHTTCHHHHHTTBHHHHHHHTTSSCTTCBCCCCCSCCCBCBCTTSSSBCCSTT
T ss_pred eEEEeccccccccCCCHH----HHHHHHhcCCHHHHHHhHHHHHHHHcCCccCCcccCCcCcCCCccCcCCCcccccccC
Confidence 499999999987632111 111111100 00011233444433322222222221111222221 222111121
Q ss_pred -CCCCceEEEEeCCCCCCceeeeEEEEcCCCCCCCccceEEEEEecC
Q 010500 425 -KYGTRVDYILASPNSPYKFVPGSYSVFSSKGTSDHHIVKVDITKAQ 470 (509)
Q Consensus 425 -~~~~RIDyIf~S~~~~~kl~v~s~~Vi~~~~~SDH~PV~adf~L~~ 470 (509)
......|.||+.+.. +....|....+...|||.||.|.|.+..
T Consensus 260 ~R~PsWcDRIL~~~~~---i~~~~Y~s~~~~~~SDHrPV~a~f~~~~ 303 (313)
T 3mtc_A 260 CRAPAWCDRILWKGKN---ITQLSYQSHMALKTSDHKPVSSVFDIGV 303 (313)
T ss_dssp CCCCBCCEEEEEEESS---EEEEEEEECTTCCSSSSCCEEEEEEEEE
T ss_pred EecccccceEEEecCC---eEEEeeeeccCccCCCccCeEEEEEEEE
Confidence 124557999998653 6778888776678999999999999865
No 32
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=99.25 E-value=8e-10 Score=112.41 Aligned_cols=228 Identities=14% Similarity=0.035 Sum_probs=121.0
Q ss_pred cCCcEE--EEcCccCCcccCCChH-HHHHHHhCCcEEEecc-CCCCceeEEEEecccee----eeEeeecCC----CCCc
Q 010500 237 LDADLL--ALQDVKAEEENSMKPL-SDLAAALGMNYVFAES-WAPEYGNAVLSKWPIKR----WKVQKIFDD----TDFR 304 (509)
Q Consensus 237 ~dpDVI--~LQEV~~~~~~~~~~l-~~La~~lG~~~~f~~s-~~g~~GvAILSR~PI~~----~~~~~l~~~----~~~R 304 (509)
..|||+ +|||+........+.+ ..|.......|..... .-.+..++|+.|..+.. ........+ ...+
T Consensus 46 ~~~DiyviG~QE~~~~~~~W~~~i~~~L~~~~~~~Y~~v~s~~L~gi~l~Vfvk~~~~~~I~~v~~~~v~tG~~g~~GNK 125 (316)
T 4a9c_A 46 IPHDIYVFGTQENSVGDREWLDLLRGGLKELTDLDYRPIAMQSLWNIKVAVLVKPEHENRISHVSTSSVKTGIANTLGNK 125 (316)
T ss_dssp SCCSEEEEEEESCCSCHHHHHHHHHHHHHHHHSCCCEEEEEEEETTEEEEEEECGGGGGGEEEEEEEEEEEC------CE
T ss_pred CCCcEEEEeccccccchhHHHHHHHHHhccccCCCEEEEEeeeehheeeeeEEeHHHhhhCcccccceeeeeeeEecCCC
Confidence 347876 9999964322111111 1233222222222111 12456778888865432 222112222 3468
Q ss_pred eEEEEEEEeCCccEEEEEEecCCC--CChHHHHHHHHHHHHHcC-------------CCCcEEEEecCCCCCCCCCcchh
Q 010500 305 NVLKATVDVPQIGEVNFHCTHLDH--LDENWRMKQMNAIIQSND-------------HGEAHILAGALNSLDETDYSSER 369 (509)
Q Consensus 305 ~~L~a~l~~~g~~~L~VintHL~~--~~~~~R~~Q~~~L~~~L~-------------~~~PvIL~GDFNs~p~s~~~~~~ 369 (509)
+++.+.+.+.+ ..+.|+|+||.+ .....|..+...|++.+. ....+|++||||...+.+.
T Consensus 126 GaV~ir~~~~~-ts~~FVn~HLaAg~~~~~~Rn~d~~~I~~~l~f~~~~~~~~d~~~~~d~vfw~GDLNyRi~~~~---- 200 (316)
T 4a9c_A 126 GAVGVSFMFNG-TSFGFVNCHLTSGNEKTARRNQNYLDILRLLSLGDRQLNAFDISLRFTHLFWFGDLNYRLDMDI---- 200 (316)
T ss_dssp EEEEEEEEETT-EEEEEEEEECCCSTTCHHHHHHHHHHHHHHCCC-------CCTTTTSSEEEEEEECCCCBSSCH----
T ss_pred ceEEEEEEECC-cEEEEEEeccccCchHHHHHHHHHHHHHHhCCCCCCCcCccccCCcCCeEEEcCCccCCcCCCH----
Confidence 89999999987 899999999986 345688899999988752 1124899999999886431
Q ss_pred hhhHHHhhhhcC--CCChhHHHHHHHhhCCceecccccCCCcceeEec-CCccc-cC------C---CCCCCceEEEEeC
Q 010500 370 WTDIVKYYEEMG--KPTPKVEVMKFLKSKQYTDSKDFAGECESVVMIA-KGQSV-QG------T---CKYGTRVDYILAS 436 (509)
Q Consensus 370 ~~~i~~~~~~~G--~~~~~~~~~~~L~~~glvDa~~~~~~~~~tT~~~-~g~~~-~~------t---~~~~~RIDyIf~S 436 (509)
.++..+....- .+...++.......+....-|.+..-..+-||-+ .|... .. + .....-.|.||+.
T Consensus 201 -~~v~~~i~~~~~~~Ll~~DQL~~e~~~g~~F~gf~E~~i~F~PTYKy~~~s~~~y~~~~~~~~~~k~R~PaWcDRIL~~ 279 (316)
T 4a9c_A 201 -QEILNYISRKEFEPLLRVDQLNLEREKHKVFLRFSEEEISFPPTYRYERGSRDTYAWHKQKPTGVRTNVPSWCDRILWK 279 (316)
T ss_dssp -HHHHHHHHTTCCHHHHTTBHHHHHHHTTSSSTTCBCCCCCSCCCBCBCTTCSSCBCCC--------CCCCBCCEEEEEE
T ss_pred -HHHHHHHhcccHHHHhccChHHHHHhcCCcccccccCCcccCCCccccCCCcccccccccccccccccCCcccceEEec
Confidence 11211111100 0011234444443322111122111111112211 11100 00 0 0124556999987
Q ss_pred CCCCCceeeeEEEEcCCCCCCCccceEEEEEecC
Q 010500 437 PNSPYKFVPGSYSVFSSKGTSDHHIVKVDITKAQ 470 (509)
Q Consensus 437 ~~~~~kl~v~s~~Vi~~~~~SDH~PV~adf~L~~ 470 (509)
......+....|....+...|||.||.|.|.+.-
T Consensus 280 ~~~~~~i~~~~Y~s~~~~~~SDHrPV~a~f~v~V 313 (316)
T 4a9c_A 280 SYPETHIICNSYGCTDDIVTSDHSPVFGTFEVGV 313 (316)
T ss_dssp ECTTCCEEEEEEEECSSCCSSSSCCEEEEEEEEC
T ss_pred cCCCCceEEeeecccCCcCCCCcccEEEEEEEEE
Confidence 6432336677888777778999999999998753
Done!