Query 010501
Match_columns 509
No_of_seqs 358 out of 3093
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 01:16:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010501.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010501hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02318 phosphoribulokinase/u 100.0 2E-130 4E-135 1056.5 35.0 500 1-502 1-500 (656)
2 COG0572 Udk Uridine kinase [Nu 100.0 2.5E-37 5.3E-42 300.6 16.4 175 64-239 6-189 (218)
3 PTZ00301 uridine kinase; Provi 100.0 9E-33 2E-37 268.8 15.2 193 66-270 3-208 (210)
4 cd02029 PRK_like Phosphoribulo 100.0 7.5E-31 1.6E-35 262.6 16.0 181 68-250 1-217 (277)
5 PF00485 PRK: Phosphoribulokin 100.0 3.8E-31 8.2E-36 252.2 11.6 170 68-239 1-187 (194)
6 PRK15453 phosphoribulokinase; 100.0 2.9E-28 6.3E-33 245.6 16.9 185 65-250 4-223 (290)
7 cd02025 PanK Pantothenate kina 100.0 5.2E-28 1.1E-32 236.5 14.2 173 68-240 1-210 (220)
8 cd02028 UMPK_like Uridine mono 99.9 8.7E-28 1.9E-32 227.7 13.1 169 68-238 1-178 (179)
9 PLN02348 phosphoribulokinase 99.9 5.9E-27 1.3E-31 245.2 17.0 175 61-238 44-242 (395)
10 PRK05480 uridine/cytidine kina 99.9 2.2E-26 4.8E-31 221.2 15.8 176 65-241 5-189 (209)
11 TIGR00235 udk uridine kinase. 99.9 1.4E-25 3.1E-30 215.9 15.6 172 67-239 7-187 (207)
12 TIGR00554 panK_bact pantothena 99.9 1.6E-25 3.5E-30 227.6 16.1 180 63-242 59-280 (290)
13 PRK05439 pantothenate kinase; 99.9 6.8E-25 1.5E-29 224.7 17.9 180 62-241 82-299 (311)
14 cd02023 UMPK Uridine monophosp 99.9 6.2E-24 1.3E-28 202.4 17.0 173 68-241 1-182 (198)
15 cd02026 PRK Phosphoribulokinas 99.9 2.2E-23 4.8E-28 210.3 15.6 168 68-238 1-175 (273)
16 PRK07429 phosphoribulokinase; 99.9 3.8E-23 8.3E-28 213.5 16.1 173 63-238 5-184 (327)
17 KOG4203 Armadillo/beta-Catenin 99.9 2E-24 4.3E-29 232.3 5.7 279 62-359 40-349 (473)
18 COG3842 PotA ABC-type spermidi 99.9 8E-24 1.7E-28 219.5 0.5 214 40-304 8-248 (352)
19 COG1126 GlnQ ABC-type polar am 99.9 2.1E-22 4.5E-27 195.4 4.3 165 40-214 5-196 (240)
20 PRK06696 uridine kinase; Valid 99.8 8.5E-21 1.8E-25 185.1 13.7 178 63-241 19-211 (223)
21 PRK09270 nucleoside triphospha 99.8 1.6E-20 3.4E-25 183.9 15.6 178 62-241 29-222 (229)
22 COG3839 MalK ABC-type sugar tr 99.8 2E-22 4.2E-27 208.2 0.4 204 40-294 6-232 (338)
23 cd02024 NRK1 Nicotinamide ribo 99.8 9.2E-21 2E-25 181.7 7.6 158 68-225 1-179 (187)
24 COG1118 CysA ABC-type sulfate/ 99.8 2.5E-21 5.4E-26 195.8 3.7 215 41-307 6-252 (345)
25 COG1116 TauB ABC-type nitrate/ 99.8 3.2E-20 6.9E-25 183.6 5.0 171 40-219 6-196 (248)
26 COG1125 OpuBA ABC-type proline 99.8 1.3E-19 2.7E-24 179.7 2.9 204 40-294 4-234 (309)
27 PRK11432 fbpC ferric transport 99.8 3E-19 6.4E-24 186.2 5.4 212 40-303 9-247 (351)
28 COG1120 FepC ABC-type cobalami 99.8 3.4E-19 7.4E-24 178.2 5.3 165 40-214 5-199 (258)
29 COG1124 DppF ABC-type dipeptid 99.8 7.3E-19 1.6E-23 173.3 6.7 187 40-236 6-230 (252)
30 PRK07667 uridine kinase; Provi 99.8 6.2E-18 1.3E-22 161.8 12.1 165 64-237 15-192 (193)
31 TIGR03265 PhnT2 putative 2-ami 99.7 4.9E-19 1.1E-23 184.7 4.7 138 40-180 7-167 (353)
32 COG1135 AbcC ABC-type metal io 99.7 2.2E-18 4.8E-23 174.7 8.7 237 50-339 19-297 (339)
33 COG1136 SalX ABC-type antimicr 99.7 1.3E-18 2.9E-23 171.0 6.2 154 50-213 18-202 (226)
34 COG1122 CbiO ABC-type cobalt t 99.7 5.4E-18 1.2E-22 168.0 10.0 155 39-203 5-187 (235)
35 COG1127 Ttg2A ABC-type transpo 99.7 2.5E-18 5.5E-23 169.3 7.3 138 40-180 11-178 (263)
36 PRK09452 potA putrescine/sperm 99.7 1.1E-18 2.4E-23 183.5 4.5 138 40-180 17-177 (375)
37 PRK11650 ugpC glycerol-3-phosp 99.7 9.6E-19 2.1E-23 182.7 3.6 138 40-180 6-167 (356)
38 COG1117 PstB ABC-type phosphat 99.7 5.3E-18 1.2E-22 164.6 8.0 199 39-291 9-243 (253)
39 COG1121 ZnuC ABC-type Mn/Zn tr 99.7 1.5E-17 3.3E-22 165.9 10.5 165 40-214 7-199 (254)
40 TIGR03258 PhnT 2-aminoethylpho 99.7 1.8E-18 3.9E-23 181.1 3.3 153 40-202 8-185 (362)
41 PRK10851 sulfate/thiosulfate t 99.7 3.5E-18 7.7E-23 178.3 5.5 158 40-207 5-190 (353)
42 PRK11607 potG putrescine trans 99.7 2.8E-18 6.1E-23 180.5 4.1 138 40-180 22-182 (377)
43 PRK13537 nodulation ABC transp 99.7 1.8E-17 3.9E-22 169.5 8.2 158 40-207 10-191 (306)
44 PRK06547 hypothetical protein; 99.7 1.3E-16 2.9E-21 150.9 12.7 153 63-238 12-171 (172)
45 COG3638 ABC-type phosphate/pho 99.7 4.9E-17 1.1E-21 159.9 9.9 164 40-213 6-207 (258)
46 COG1072 CoaA Panthothenate kin 99.7 1.9E-16 4.1E-21 158.8 13.6 162 61-223 77-255 (283)
47 PRK11000 maltose/maltodextrin 99.7 1.9E-17 4.2E-22 173.6 6.7 138 40-180 6-166 (369)
48 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.7 4.3E-17 9.4E-22 157.2 8.0 158 40-207 3-194 (218)
49 cd03261 ABC_Org_Solvent_Resist 99.7 5.7E-17 1.2E-21 158.5 8.9 163 40-212 3-195 (235)
50 COG1131 CcmA ABC-type multidru 99.7 3.2E-17 6.9E-22 167.1 7.4 157 41-207 8-190 (293)
51 TIGR00960 3a0501s02 Type II (G 99.7 5.2E-17 1.1E-21 156.6 8.0 157 40-206 4-190 (216)
52 TIGR02314 ABC_MetN D-methionin 99.7 1.3E-17 2.7E-22 173.6 3.7 162 41-212 5-199 (343)
53 cd03265 ABC_DrrA DrrA is the A 99.7 7.3E-17 1.6E-21 156.2 8.4 157 40-206 3-184 (220)
54 cd03269 ABC_putative_ATPase Th 99.7 6.5E-17 1.4E-21 155.3 7.8 158 40-207 3-181 (210)
55 cd03259 ABC_Carb_Solutes_like 99.7 6.7E-17 1.4E-21 155.5 7.4 158 40-207 3-184 (213)
56 TIGR01288 nodI ATP-binding ABC 99.7 7.9E-17 1.7E-21 164.2 8.0 158 40-207 7-188 (303)
57 PRK13536 nodulation factor exp 99.7 9E-17 1.9E-21 167.0 8.3 157 40-206 44-224 (340)
58 cd03230 ABC_DR_subfamily_A Thi 99.7 1.3E-16 2.9E-21 149.4 8.7 137 41-206 4-147 (173)
59 cd03218 ABC_YhbG The ABC trans 99.7 1.3E-16 2.8E-21 155.3 8.8 158 40-207 3-186 (232)
60 TIGR03608 L_ocin_972_ABC putat 99.7 7.4E-17 1.6E-21 154.1 6.6 156 41-206 2-186 (206)
61 cd03293 ABC_NrtD_SsuB_transpor 99.7 1.5E-16 3.4E-21 153.9 8.5 156 41-206 4-184 (220)
62 COG2884 FtsE Predicted ATPase 99.7 5.5E-17 1.2E-21 155.2 4.9 157 42-208 6-191 (223)
63 cd03224 ABC_TM1139_LivF_branch 99.7 1.6E-16 3.4E-21 153.5 8.2 158 40-207 3-185 (222)
64 cd03219 ABC_Mj1267_LivG_branch 99.7 1.3E-16 2.7E-21 155.7 7.4 158 41-208 4-197 (236)
65 cd03268 ABC_BcrA_bacitracin_re 99.7 1.8E-16 3.9E-21 152.0 8.3 157 40-206 3-178 (208)
66 cd03226 ABC_cobalt_CbiO_domain 99.7 1.3E-16 2.7E-21 152.9 7.2 157 41-207 3-179 (205)
67 TIGR02673 FtsE cell division A 99.7 1.4E-16 3.1E-21 153.2 7.1 158 40-207 4-190 (214)
68 cd03296 ABC_CysA_sulfate_impor 99.7 2.5E-16 5.5E-21 154.4 9.0 159 40-208 5-191 (239)
69 cd03229 ABC_Class3 This class 99.6 2E-16 4.4E-21 148.9 7.7 140 40-206 3-153 (178)
70 COG0411 LivG ABC-type branched 99.6 8.4E-17 1.8E-21 158.8 5.1 153 40-202 7-197 (250)
71 TIGR02211 LolD_lipo_ex lipopro 99.6 2.3E-16 5E-21 152.4 8.1 158 40-207 4-195 (221)
72 cd03258 ABC_MetN_methionine_tr 99.6 1.6E-16 3.4E-21 155.0 7.0 161 40-210 4-197 (233)
73 PRK11629 lolD lipoprotein tran 99.6 2.2E-16 4.9E-21 154.2 8.1 159 40-208 8-200 (233)
74 cd03225 ABC_cobalt_CbiO_domain 99.6 1.7E-16 3.6E-21 152.4 7.0 156 41-206 3-186 (211)
75 PRK11153 metN DL-methionine tr 99.6 2.2E-16 4.9E-21 163.9 8.4 163 40-212 4-199 (343)
76 TIGR01188 drrA daunorubicin re 99.6 1.6E-16 3.6E-21 161.8 7.0 151 47-207 3-177 (302)
77 cd03266 ABC_NatA_sodium_export 99.6 1.6E-16 3.6E-21 153.2 6.6 158 40-207 4-189 (218)
78 cd03262 ABC_HisP_GlnQ_permease 99.6 2.9E-16 6.2E-21 150.8 8.2 157 40-206 3-187 (213)
79 cd03301 ABC_MalK_N The N-termi 99.6 2.8E-16 6.1E-21 151.0 8.1 158 40-207 3-184 (213)
80 cd03292 ABC_FtsE_transporter F 99.6 2.4E-16 5.3E-21 151.3 7.6 158 40-207 3-189 (214)
81 TIGR02315 ABC_phnC phosphonate 99.6 2.2E-16 4.7E-21 154.7 7.3 159 40-208 4-200 (243)
82 COG1137 YhbG ABC-type (unclass 99.6 3.6E-17 7.8E-22 157.6 1.7 157 40-206 7-191 (243)
83 cd03256 ABC_PhnC_transporter A 99.6 3.1E-16 6.7E-21 153.3 8.2 159 40-208 3-199 (241)
84 PRK10908 cell division protein 99.6 2.4E-16 5.3E-21 152.8 7.3 157 40-206 4-189 (222)
85 PRK13540 cytochrome c biogenes 99.6 1.6E-16 3.5E-21 152.0 5.9 157 40-206 4-179 (200)
86 TIGR01189 ccmA heme ABC export 99.6 4.5E-16 9.7E-21 148.5 8.7 138 40-180 3-160 (198)
87 TIGR03864 PQQ_ABC_ATP ABC tran 99.6 4.4E-16 9.5E-21 152.5 8.8 158 40-207 4-186 (236)
88 cd03246 ABCC_Protease_Secretio 99.6 3.5E-16 7.6E-21 146.6 7.6 136 41-207 4-149 (173)
89 TIGR03410 urea_trans_UrtE urea 99.6 3.7E-16 8.1E-21 152.1 7.8 163 40-212 3-190 (230)
90 cd03235 ABC_Metallic_Cations A 99.6 2.6E-16 5.5E-21 151.5 6.5 156 41-206 3-184 (213)
91 cd03263 ABC_subfamily_A The AB 99.6 3.6E-16 7.7E-21 151.0 7.4 138 40-180 3-166 (220)
92 TIGR03522 GldA_ABC_ATP gliding 99.6 3.7E-16 8E-21 159.2 7.7 151 40-200 5-179 (301)
93 COG0410 LivF ABC-type branched 99.6 3.5E-16 7.7E-21 153.3 7.2 158 40-207 6-190 (237)
94 PRK11831 putative ABC transpor 99.6 4.2E-16 9.1E-21 156.1 7.9 158 40-207 10-197 (269)
95 PLN03046 D-glycerate 3-kinase; 99.6 3.9E-15 8.5E-20 157.5 15.5 163 64-227 210-430 (460)
96 cd03232 ABC_PDR_domain2 The pl 99.6 6.4E-16 1.4E-20 147.3 8.7 145 40-206 6-160 (192)
97 PRK11124 artP arginine transpo 99.6 5.3E-16 1.1E-20 152.3 8.4 161 40-210 5-197 (242)
98 PRK09493 glnQ glutamine ABC tr 99.6 5.3E-16 1.1E-20 152.1 8.3 158 40-207 4-189 (240)
99 PRK13538 cytochrome c biogenes 99.6 6.1E-16 1.3E-20 148.5 8.5 157 40-206 4-181 (204)
100 PRK10895 lipopolysaccharide AB 99.6 7.2E-16 1.6E-20 151.3 9.1 159 40-208 6-191 (241)
101 PRK11247 ssuB aliphatic sulfon 99.6 3.8E-16 8.2E-21 156.1 7.2 159 40-208 15-188 (257)
102 cd03295 ABC_OpuCA_Osmoprotecti 99.6 4.7E-16 1E-20 152.8 7.8 163 40-212 3-194 (242)
103 PRK11144 modC molybdate transp 99.6 1.8E-16 3.9E-21 165.2 5.0 154 42-207 5-182 (352)
104 PRK11248 tauB taurine transpor 99.6 5.8E-16 1.3E-20 154.2 8.4 159 40-208 4-183 (255)
105 PRK11264 putative amino-acid A 99.6 5.9E-16 1.3E-20 152.4 8.1 158 40-207 6-197 (250)
106 cd03257 ABC_NikE_OppD_transpor 99.6 4.8E-16 1E-20 150.5 7.1 157 40-206 4-198 (228)
107 cd03231 ABC_CcmA_heme_exporter 99.6 7.9E-16 1.7E-20 147.5 8.3 138 40-180 3-158 (201)
108 PRK09536 btuD corrinoid ABC tr 99.6 7.9E-16 1.7E-20 163.3 9.1 163 40-212 6-197 (402)
109 cd03294 ABC_Pro_Gly_Bertaine T 99.6 4E-16 8.7E-21 156.3 6.3 158 40-207 27-214 (269)
110 PRK10584 putative ABC transpor 99.6 8.5E-16 1.8E-20 149.4 8.4 158 40-207 9-200 (228)
111 PRK10619 histidine/lysine/argi 99.6 7.8E-16 1.7E-20 152.7 8.2 161 40-210 8-208 (257)
112 TIGR01978 sufC FeS assembly AT 99.6 8.4E-16 1.8E-20 150.4 8.3 158 40-207 3-197 (243)
113 PRK13539 cytochrome c biogenes 99.6 1.1E-15 2.3E-20 147.3 8.5 157 40-206 5-179 (207)
114 cd03213 ABCG_EPDR ABCG transpo 99.6 7.1E-16 1.5E-20 147.3 7.2 145 40-206 6-163 (194)
115 PRK13543 cytochrome c biogenes 99.6 1E-15 2.2E-20 148.1 8.4 157 40-206 14-189 (214)
116 cd03233 ABC_PDR_domain1 The pl 99.6 1E-15 2.2E-20 147.1 8.3 147 40-202 6-166 (202)
117 PRK11300 livG leucine/isoleuci 99.6 1.2E-15 2.5E-20 150.8 8.5 161 40-210 8-210 (255)
118 PRK13650 cbiO cobalt transport 99.6 7.1E-16 1.5E-20 155.5 7.0 164 40-213 7-200 (279)
119 PRK14250 phosphate ABC transpo 99.6 9.2E-16 2E-20 151.0 7.6 162 40-212 6-190 (241)
120 PRK13647 cbiO cobalt transport 99.6 7.5E-16 1.6E-20 154.9 7.0 163 40-212 7-196 (274)
121 PRK13637 cbiO cobalt transport 99.6 1E-15 2.2E-20 155.1 7.8 164 40-213 5-204 (287)
122 PRK11614 livF leucine/isoleuci 99.6 8.5E-16 1.8E-20 150.4 7.0 158 40-207 8-190 (237)
123 PRK13548 hmuV hemin importer A 99.6 1.5E-15 3.3E-20 151.1 8.9 158 40-207 5-194 (258)
124 COG4598 HisP ABC-type histidin 99.6 3.6E-16 7.9E-21 148.7 4.1 163 41-213 10-211 (256)
125 TIGR03740 galliderm_ABC gallid 99.6 1.4E-15 3E-20 147.6 8.2 158 40-207 3-177 (223)
126 PRK15439 autoinducer 2 ABC tra 99.6 9.3E-16 2E-20 166.7 7.8 163 40-212 14-198 (510)
127 cd03215 ABC_Carb_Monos_II This 99.6 1.9E-15 4.2E-20 142.7 8.8 138 41-207 8-157 (182)
128 TIGR00972 3a0107s01c2 phosphat 99.6 1.7E-15 3.7E-20 149.3 8.8 152 40-202 4-192 (247)
129 TIGR03411 urea_trans_UrtD urea 99.6 1.8E-15 3.9E-20 148.3 8.7 152 40-201 5-190 (242)
130 PRK10247 putative ABC transpor 99.6 1.2E-15 2.5E-20 148.8 7.1 156 40-206 10-190 (225)
131 PRK14247 phosphate ABC transpo 99.6 2.2E-15 4.8E-20 148.6 9.0 138 40-180 6-179 (250)
132 COG4525 TauB ABC-type taurine 99.6 6.4E-16 1.4E-20 148.7 5.0 138 40-180 6-165 (259)
133 cd03264 ABC_drug_resistance_li 99.6 1.6E-15 3.4E-20 145.9 7.6 137 40-180 3-163 (211)
134 TIGR03005 ectoine_ehuA ectoine 99.6 1.8E-15 3.9E-20 149.5 8.2 158 40-207 3-200 (252)
135 PRK14242 phosphate transporter 99.6 2.2E-15 4.8E-20 148.8 8.6 155 40-206 9-200 (253)
136 PRK09984 phosphonate/organopho 99.6 1.6E-15 3.5E-20 150.9 7.6 161 40-210 7-209 (262)
137 PRK08233 hypothetical protein; 99.6 2.2E-14 4.8E-19 133.4 14.8 151 66-239 3-160 (182)
138 cd03247 ABCC_cytochrome_bd The 99.6 1.1E-15 2.3E-20 143.8 6.0 119 41-180 4-131 (178)
139 PRK13646 cbiO cobalt transport 99.6 1.3E-15 2.8E-20 154.1 7.0 164 40-213 5-205 (286)
140 cd03217 ABC_FeS_Assembly ABC-t 99.6 2E-15 4.4E-20 144.7 7.9 145 40-208 3-158 (200)
141 TIGR01166 cbiO cobalt transpor 99.6 8.5E-16 1.9E-20 145.5 5.2 147 48-204 3-177 (190)
142 PRK13651 cobalt transporter AT 99.6 1.2E-15 2.7E-20 156.1 6.5 163 40-212 5-223 (305)
143 PRK13641 cbiO cobalt transport 99.6 1.5E-15 3.2E-20 153.7 7.0 163 40-212 5-203 (287)
144 TIGR01186 proV glycine betaine 99.6 1.4E-15 3.1E-20 159.5 7.0 131 47-180 3-162 (363)
145 PRK13634 cbiO cobalt transport 99.6 1.6E-15 3.5E-20 153.8 7.2 163 40-212 5-204 (290)
146 cd03260 ABC_PstB_phosphate_tra 99.6 2.2E-15 4.8E-20 146.4 7.6 137 40-180 3-174 (227)
147 PRK13643 cbiO cobalt transport 99.6 1.8E-15 3.9E-20 153.3 7.2 162 40-212 4-202 (288)
148 COG4555 NatA ABC-type Na+ tran 99.6 4.9E-16 1.1E-20 149.9 2.8 154 43-206 7-185 (245)
149 PRK10762 D-ribose transporter 99.6 2.4E-15 5.3E-20 162.9 8.5 163 40-212 7-199 (501)
150 PRK10575 iron-hydroxamate tran 99.6 2.7E-15 5.8E-20 149.8 8.1 158 40-207 14-201 (265)
151 PRK13635 cbiO cobalt transport 99.6 1.5E-15 3.3E-20 153.2 6.3 163 40-212 8-199 (279)
152 PRK09700 D-allose transporter 99.6 2E-15 4.4E-20 163.8 7.8 163 40-212 8-203 (510)
153 cd03228 ABCC_MRP_Like The MRP 99.6 2E-15 4.4E-20 141.2 6.8 116 41-180 4-129 (171)
154 PRK11231 fecE iron-dicitrate t 99.6 2.4E-15 5.2E-20 149.1 7.6 157 40-206 5-190 (255)
155 PRK13638 cbiO cobalt transport 99.6 1.7E-15 3.7E-20 151.7 6.4 159 40-208 4-190 (271)
156 PRK13644 cbiO cobalt transport 99.6 1.8E-15 3.9E-20 152.2 6.4 164 40-213 4-195 (274)
157 TIGR03873 F420-0_ABC_ATP propo 99.6 3.5E-15 7.6E-20 148.0 8.2 157 40-206 4-189 (256)
158 PRK10253 iron-enterobactin tra 99.6 3.6E-15 7.9E-20 148.9 8.3 158 40-207 10-197 (265)
159 TIGR02142 modC_ABC molybdenum 99.6 4.2E-15 9E-20 155.0 9.0 159 42-212 4-190 (354)
160 PRK14267 phosphate ABC transpo 99.6 4.5E-15 9.8E-20 146.6 8.6 152 40-201 7-196 (253)
161 TIGR00968 3a0106s01 sulfate AB 99.6 3.9E-15 8.5E-20 146.2 8.0 158 40-207 3-184 (237)
162 PRK14235 phosphate transporter 99.6 6.2E-15 1.4E-19 147.5 9.5 137 40-180 22-196 (267)
163 PRK13652 cbiO cobalt transport 99.6 3.7E-15 8.1E-20 150.0 7.9 163 40-212 6-196 (277)
164 cd03251 ABCC_MsbA MsbA is an e 99.6 3.7E-15 8.1E-20 145.2 7.7 149 41-200 4-184 (234)
165 PRK15079 oligopeptide ABC tran 99.6 3.3E-15 7.2E-20 154.7 7.7 151 50-210 34-218 (331)
166 PRK14268 phosphate ABC transpo 99.6 4.3E-15 9.4E-20 147.6 8.1 151 40-201 15-201 (258)
167 cd03298 ABC_ThiQ_thiamine_tran 99.6 5.2E-15 1.1E-19 142.2 8.3 156 40-207 3-182 (211)
168 COG4152 ABC-type uncharacteriz 99.6 2.4E-15 5.2E-20 148.8 6.1 160 40-209 5-185 (300)
169 cd03223 ABCD_peroxisomal_ALDP 99.6 5.2E-15 1.1E-19 138.2 8.1 119 41-180 4-124 (166)
170 PRK14262 phosphate ABC transpo 99.6 4.3E-15 9.2E-20 146.5 7.9 137 40-180 6-179 (250)
171 PRK10982 galactose/methyl gala 99.6 3.9E-15 8.4E-20 160.9 8.3 162 41-212 2-192 (491)
172 PRK13649 cbiO cobalt transport 99.6 3E-15 6.5E-20 150.5 6.9 158 40-208 5-199 (280)
173 PRK14240 phosphate transporter 99.6 4.6E-15 9.9E-20 146.3 8.0 150 40-200 6-192 (250)
174 cd03300 ABC_PotA_N PotA is an 99.6 4.9E-15 1.1E-19 144.9 8.0 158 40-207 3-184 (232)
175 PRK11288 araG L-arabinose tran 99.6 4.6E-15 9.9E-20 160.8 8.5 164 40-213 7-199 (501)
176 TIGR02324 CP_lyasePhnL phospho 99.6 6.4E-15 1.4E-19 142.8 8.4 157 41-207 5-202 (224)
177 PRK13541 cytochrome c biogenes 99.6 8.3E-15 1.8E-19 139.7 9.0 136 41-180 5-156 (195)
178 PRK13648 cbiO cobalt transport 99.6 3.9E-15 8.6E-20 148.9 7.0 159 40-208 10-197 (269)
179 PRK13632 cbiO cobalt transport 99.6 3.6E-15 7.8E-20 149.5 6.6 154 40-203 10-191 (271)
180 cd03254 ABCC_Glucan_exporter_l 99.6 3.5E-15 7.5E-20 145.0 6.3 137 40-180 5-172 (229)
181 TIGR02769 nickel_nikE nickel i 99.6 5.5E-15 1.2E-19 147.6 7.9 160 41-210 6-207 (265)
182 PRK11308 dppF dipeptide transp 99.6 5.2E-15 1.1E-19 153.0 7.9 151 50-210 28-211 (327)
183 cd03297 ABC_ModC_molybdenum_tr 99.6 4.1E-15 8.9E-20 143.4 6.6 152 42-206 5-184 (214)
184 PRK13639 cbiO cobalt transport 99.6 4.3E-15 9.4E-20 149.4 7.0 163 40-212 4-195 (275)
185 cd03252 ABCC_Hemolysin The ABC 99.6 4.5E-15 9.7E-20 145.1 6.9 136 41-180 4-171 (237)
186 PRK13549 xylose transporter AT 99.6 6.3E-15 1.4E-19 159.9 8.7 164 40-213 8-202 (506)
187 PRK10744 pstB phosphate transp 99.6 6.5E-15 1.4E-19 146.5 8.0 137 40-180 16-189 (260)
188 PRK14256 phosphate ABC transpo 99.6 9.5E-15 2.1E-19 144.4 9.1 152 40-201 7-195 (252)
189 PRK14259 phosphate ABC transpo 99.6 8.4E-15 1.8E-19 146.8 8.8 137 40-180 16-187 (269)
190 PRK14273 phosphate ABC transpo 99.6 5.4E-15 1.2E-19 146.3 7.3 150 40-200 10-196 (254)
191 PRK14248 phosphate ABC transpo 99.6 7.3E-15 1.6E-19 146.8 8.3 151 40-201 24-211 (268)
192 PRK11701 phnK phosphonate C-P 99.6 7.1E-15 1.5E-19 146.0 8.1 158 40-207 9-205 (258)
193 PRK13636 cbiO cobalt transport 99.6 5E-15 1.1E-19 149.6 7.1 163 40-212 8-200 (283)
194 PRK14241 phosphate transporter 99.6 9.2E-15 2E-19 145.1 8.8 151 40-200 7-194 (258)
195 PRK14272 phosphate ABC transpo 99.6 7.6E-15 1.6E-19 144.8 8.2 138 40-180 7-181 (252)
196 PRK09544 znuC high-affinity zi 99.6 7E-15 1.5E-19 146.3 7.9 155 40-208 7-175 (251)
197 PLN02796 D-glycerate 3-kinase 99.5 4.5E-14 9.7E-19 146.7 14.0 175 51-226 80-317 (347)
198 PRK14249 phosphate ABC transpo 99.5 8.8E-15 1.9E-19 144.5 8.4 150 40-200 7-193 (251)
199 TIGR02633 xylG D-xylose ABC tr 99.5 7.7E-15 1.7E-19 158.8 8.6 164 40-213 4-200 (500)
200 PRK13631 cbiO cobalt transport 99.5 6.7E-15 1.5E-19 151.7 7.6 163 40-213 24-235 (320)
201 TIGR02982 heterocyst_DevA ABC 99.5 7.3E-15 1.6E-19 142.4 7.3 157 41-207 5-195 (220)
202 PRK14274 phosphate ABC transpo 99.5 1.2E-14 2.6E-19 144.4 8.7 137 40-180 15-188 (259)
203 TIGR01277 thiQ thiamine ABC tr 99.5 1.1E-14 2.3E-19 140.6 8.0 155 41-207 4-182 (213)
204 PRK11022 dppD dipeptide transp 99.5 9.2E-15 2E-19 151.0 8.0 158 41-208 7-208 (326)
205 PRK14239 phosphate transporter 99.5 1.2E-14 2.5E-19 143.4 8.4 137 40-180 8-181 (252)
206 PRK15093 antimicrobial peptide 99.5 1E-14 2.2E-19 150.8 8.2 158 41-208 7-213 (330)
207 cd03216 ABC_Carb_Monos_I This 99.5 1.1E-14 2.4E-19 135.6 7.6 131 40-206 3-134 (163)
208 cd03249 ABC_MTABC3_MDL1_MDL2 M 99.5 8.8E-15 1.9E-19 143.1 7.3 154 41-206 4-190 (238)
209 PRK14269 phosphate ABC transpo 99.5 9.1E-15 2E-19 144.2 7.5 137 40-180 5-175 (246)
210 cd03250 ABCC_MRP_domain1 Domai 99.5 5.8E-15 1.2E-19 141.4 5.8 131 40-180 3-160 (204)
211 PRK14253 phosphate ABC transpo 99.5 1E-14 2.2E-19 143.7 7.7 151 40-201 6-192 (249)
212 COG1132 MdlB ABC-type multidru 99.5 3.3E-15 7.1E-20 164.0 4.6 164 39-214 330-524 (567)
213 PRK14255 phosphate ABC transpo 99.5 1.2E-14 2.7E-19 143.4 8.3 137 40-180 8-181 (252)
214 PRK13642 cbiO cobalt transport 99.5 6.2E-15 1.3E-19 148.4 6.2 163 40-212 7-199 (277)
215 PRK14270 phosphate ABC transpo 99.5 1.6E-14 3.4E-19 142.8 8.9 151 40-201 7-194 (251)
216 cd03299 ABC_ModC_like Archeal 99.5 1.1E-14 2.4E-19 142.8 7.8 161 41-212 4-188 (235)
217 PRK13640 cbiO cobalt transport 99.5 6E-15 1.3E-19 148.9 6.1 160 40-209 8-199 (282)
218 PRK09473 oppD oligopeptide tra 99.5 9.7E-15 2.1E-19 151.2 7.7 159 41-209 16-217 (330)
219 CHL00131 ycf16 sulfate ABC tra 99.5 1.1E-14 2.5E-19 143.5 7.7 159 40-208 10-205 (252)
220 cd03369 ABCC_NFT1 Domain 2 of 99.5 6E-15 1.3E-19 141.6 5.5 137 40-180 9-158 (207)
221 PRK13633 cobalt transporter AT 99.5 8.5E-15 1.8E-19 147.6 6.8 164 40-213 7-204 (280)
222 PRK10771 thiQ thiamine transpo 99.5 1.5E-14 3.2E-19 141.4 8.1 155 40-206 4-182 (232)
223 PRK14251 phosphate ABC transpo 99.5 1.5E-14 3.2E-19 142.8 8.2 137 40-180 7-180 (251)
224 PRK14261 phosphate ABC transpo 99.5 1.4E-14 3.1E-19 143.2 8.2 137 40-180 9-182 (253)
225 PRK10070 glycine betaine trans 99.5 1E-14 2.2E-19 154.9 7.4 151 47-207 38-218 (400)
226 PRK10419 nikE nickel transport 99.5 1.3E-14 2.8E-19 145.5 7.7 158 40-207 6-205 (268)
227 COG4559 ABC-type hemin transpo 99.5 1.2E-14 2.6E-19 141.3 7.2 163 41-213 5-200 (259)
228 PRK14237 phosphate transporter 99.5 1.6E-14 3.4E-19 144.6 8.2 137 40-180 23-196 (267)
229 PRK14275 phosphate ABC transpo 99.5 1.9E-14 4E-19 145.8 8.7 137 40-180 42-215 (286)
230 COG2274 SunT ABC-type bacterio 99.5 4.4E-15 9.5E-20 167.1 4.5 138 39-180 473-642 (709)
231 PRK13645 cbiO cobalt transport 99.5 1E-14 2.2E-19 147.5 6.7 160 40-209 9-206 (289)
232 cd03253 ABCC_ATM1_transporter 99.5 1.4E-14 3.1E-19 141.3 7.5 136 41-180 4-170 (236)
233 TIGR02323 CP_lyasePhnK phospho 99.5 1.1E-14 2.3E-19 144.0 6.6 159 40-208 6-203 (253)
234 PRK13547 hmuV hemin importer A 99.5 1.9E-14 4.1E-19 145.1 8.2 158 40-207 4-208 (272)
235 PRK11819 putative ABC transpor 99.5 1.5E-14 3.2E-19 159.0 8.0 134 40-180 9-196 (556)
236 PRK14238 phosphate transporter 99.5 1.7E-14 3.6E-19 144.8 7.7 137 40-180 27-200 (271)
237 cd03245 ABCC_bacteriocin_expor 99.5 9.4E-15 2E-19 141.1 5.7 137 40-180 5-173 (220)
238 PRK14244 phosphate ABC transpo 99.5 1.8E-14 4E-19 142.3 7.9 152 38-200 6-195 (251)
239 cd03214 ABC_Iron-Siderophores_ 99.5 1.2E-14 2.5E-19 137.1 6.1 135 41-202 3-145 (180)
240 cd03234 ABCG_White The White s 99.5 1.1E-14 2.5E-19 141.6 6.2 157 40-206 6-195 (226)
241 cd03267 ABC_NatA_like Similar 99.5 1.2E-14 2.7E-19 142.7 6.4 147 46-202 30-201 (236)
242 cd03290 ABCC_SUR1_N The SUR do 99.5 1.3E-14 2.9E-19 140.3 6.5 136 41-180 4-173 (218)
243 TIGR03269 met_CoM_red_A2 methy 99.5 1.5E-14 3.3E-19 157.3 7.6 163 40-212 3-227 (520)
244 PRK14254 phosphate ABC transpo 99.5 2.3E-14 5E-19 145.1 8.4 151 40-201 42-227 (285)
245 COG4175 ProV ABC-type proline/ 99.5 1.3E-14 2.7E-19 148.0 6.3 196 47-293 38-262 (386)
246 COG1123 ATPase components of v 99.5 4.6E-15 1E-19 161.0 3.4 173 48-230 302-512 (539)
247 PRK14243 phosphate transporter 99.5 2.9E-14 6.3E-19 142.5 8.8 137 40-180 13-184 (264)
248 cd03248 ABCC_TAP TAP, the Tran 99.5 1.8E-14 4E-19 139.8 7.2 137 40-180 14-183 (226)
249 TIGR03415 ABC_choXWV_ATP choli 99.5 1.3E-14 2.8E-19 153.2 6.6 134 44-180 31-197 (382)
250 PRK09580 sufC cysteine desulfu 99.5 2.5E-14 5.4E-19 140.6 8.2 160 40-209 4-200 (248)
251 PRK15056 manganese/iron transp 99.5 2.5E-14 5.5E-19 143.5 8.4 161 40-210 9-198 (272)
252 PRK10938 putative molybdenum t 99.5 1.9E-14 4.2E-19 155.3 8.0 158 40-208 6-189 (490)
253 PRK10261 glutathione transport 99.5 1.6E-14 3.5E-19 160.9 7.7 159 40-208 15-223 (623)
254 PRK14271 phosphate ABC transpo 99.5 2.8E-14 6E-19 143.8 8.6 137 40-180 24-196 (276)
255 COG3840 ThiQ ABC-type thiamine 99.5 1.1E-14 2.3E-19 138.9 4.9 163 41-215 5-191 (231)
256 PRK15064 ABC transporter ATP-b 99.5 2E-14 4.4E-19 156.8 7.8 134 40-180 4-188 (530)
257 PRK14236 phosphate transporter 99.5 3.6E-14 7.7E-19 142.4 8.9 137 40-180 28-201 (272)
258 PRK14265 phosphate ABC transpo 99.5 2.4E-14 5.3E-19 144.0 7.7 137 40-180 23-194 (274)
259 TIGR00318 cyaB adenylyl cyclas 99.5 1.2E-13 2.6E-18 130.8 11.9 149 262-411 13-174 (174)
260 PRK14266 phosphate ABC transpo 99.5 3.2E-14 6.9E-19 140.3 8.2 151 40-201 6-193 (250)
261 COG4608 AppF ABC-type oligopep 99.5 1.7E-14 3.7E-19 144.7 6.1 158 49-228 25-190 (268)
262 PRK15112 antimicrobial peptide 99.5 2.1E-14 4.5E-19 143.7 6.7 158 40-207 7-203 (267)
263 PRK14245 phosphate ABC transpo 99.5 4.6E-14 1E-18 139.4 9.0 150 40-200 6-192 (250)
264 COG4604 CeuD ABC-type enteroch 99.5 1.7E-14 3.7E-19 139.0 5.7 166 40-214 4-196 (252)
265 PRK10261 glutathione transport 99.5 2.7E-14 5.8E-19 159.1 8.2 159 40-208 316-518 (623)
266 PRK15134 microcin C ABC transp 99.5 1.7E-14 3.7E-19 157.4 6.3 164 40-213 8-216 (529)
267 PRK11174 cysteine/glutathione 99.5 1.7E-14 3.6E-19 158.9 6.0 163 40-214 352-544 (588)
268 TIGR03719 ABC_ABC_ChvD ATP-bin 99.5 2.8E-14 6.1E-19 156.6 7.7 134 40-180 7-194 (552)
269 COG4181 Predicted ABC-type tra 99.5 2E-14 4.4E-19 136.0 5.7 138 40-180 13-179 (228)
270 PRK10418 nikD nickel transport 99.5 3.4E-14 7.4E-19 140.9 7.4 157 40-207 7-194 (254)
271 TIGR01184 ntrCD nitrate transp 99.5 1.7E-14 3.7E-19 141.2 5.1 146 53-208 1-169 (230)
272 PRK13549 xylose transporter AT 99.5 2.7E-14 5.8E-19 155.0 6.8 163 40-212 262-463 (506)
273 TIGR02868 CydC thiol reductant 99.5 3.3E-14 7.2E-19 154.6 7.5 137 40-180 337-503 (529)
274 KOG0058 Peptide exporter, ABC 99.5 1.5E-14 3.2E-19 159.9 4.8 165 38-214 466-663 (716)
275 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.5 2.7E-14 5.9E-19 139.4 6.1 153 40-207 25-195 (224)
276 PRK14260 phosphate ABC transpo 99.5 5E-14 1.1E-18 140.1 8.1 137 40-180 10-183 (259)
277 cd03244 ABCC_MRP_domain2 Domai 99.5 3.1E-14 6.6E-19 137.7 6.3 137 40-180 5-172 (221)
278 PRK15134 microcin C ABC transp 99.5 2.9E-14 6.4E-19 155.5 6.7 158 40-207 278-479 (529)
279 TIGR03269 met_CoM_red_A2 methy 99.5 3.6E-14 7.8E-19 154.4 7.0 159 40-208 282-482 (520)
280 COG0444 DppD ABC-type dipeptid 99.5 2.4E-14 5.2E-19 146.4 5.3 173 48-230 16-236 (316)
281 cd03222 ABC_RNaseL_inhibitor T 99.5 5E-14 1.1E-18 134.0 6.8 118 40-204 3-121 (177)
282 PRK14258 phosphate ABC transpo 99.5 5.1E-14 1.1E-18 140.3 7.1 157 40-207 10-204 (261)
283 PRK09700 D-allose transporter 99.5 5.4E-14 1.2E-18 152.7 7.6 160 41-212 269-467 (510)
284 PRK14264 phosphate ABC transpo 99.5 9.1E-14 2E-18 142.1 8.9 151 40-201 48-247 (305)
285 TIGR03797 NHPM_micro_ABC2 NHPM 99.5 3E-14 6.6E-19 159.8 5.8 138 39-180 453-621 (686)
286 COG0396 sufC Cysteine desulfur 99.5 7.9E-14 1.7E-18 137.0 7.7 179 41-237 7-219 (251)
287 TIGR03796 NHPM_micro_ABC1 NHPM 99.5 2.5E-14 5.3E-19 161.1 4.7 138 39-180 479-648 (710)
288 PRK03695 vitamin B12-transport 99.5 5.2E-14 1.1E-18 139.4 6.4 146 52-207 11-186 (248)
289 TIGR02633 xylG D-xylose ABC tr 99.5 5.1E-14 1.1E-18 152.4 6.7 159 40-208 260-457 (500)
290 PRK14252 phosphate ABC transpo 99.5 1E-13 2.3E-18 138.3 8.3 137 40-180 19-194 (265)
291 cd03289 ABCC_CFTR2 The CFTR su 99.5 4.5E-14 9.8E-19 142.8 5.4 137 40-180 5-171 (275)
292 TIGR02770 nickel_nikD nickel i 99.5 3.6E-14 7.7E-19 138.6 4.5 146 52-207 1-179 (230)
293 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.5 9.7E-14 2.1E-18 127.0 7.0 100 40-180 3-103 (144)
294 PRK14263 phosphate ABC transpo 99.5 1.4E-13 3E-18 137.6 8.4 136 41-180 12-182 (261)
295 PRK14246 phosphate ABC transpo 99.5 1E-13 2.2E-18 138.3 7.4 138 40-180 13-186 (257)
296 cd03288 ABCC_SUR2 The SUR doma 99.4 1E-13 2.2E-18 137.9 7.2 137 40-180 22-189 (257)
297 KOG0057 Mitochondrial Fe/S clu 99.4 4E-14 8.7E-19 152.4 4.4 165 38-214 352-546 (591)
298 PRK10790 putative multidrug tr 99.4 4.6E-14 1E-18 155.6 4.9 137 40-180 343-509 (592)
299 TIGR02857 CydD thiol reductant 99.4 4.9E-14 1.1E-18 153.3 5.0 137 40-180 323-491 (529)
300 PLN03211 ABC transporter G-25; 99.4 5.3E-14 1.1E-18 157.8 5.3 163 41-213 72-265 (659)
301 PRK15064 ABC transporter ATP-b 99.4 1.4E-13 3E-18 150.2 8.3 134 40-180 322-471 (530)
302 PRK11160 cysteine/glutathione 99.4 5.2E-14 1.1E-18 155.2 4.9 137 40-180 341-508 (574)
303 KOG0055 Multidrug/pheromone ex 99.4 4.4E-14 9.5E-19 163.7 4.4 173 40-237 353-558 (1228)
304 TIGR01193 bacteriocin_ABC ABC- 99.4 5.7E-14 1.2E-18 158.2 4.9 137 40-180 476-644 (708)
305 PRK14257 phosphate ABC transpo 99.4 1.6E-13 3.5E-18 142.1 7.8 137 40-180 83-258 (329)
306 PRK11176 lipid transporter ATP 99.4 6.3E-14 1.4E-18 154.0 4.9 137 40-180 344-513 (582)
307 PRK11288 araG L-arabinose tran 99.4 1.4E-13 3E-18 149.3 7.3 150 51-210 267-452 (501)
308 COG3845 ABC-type uncharacteriz 99.4 8.3E-14 1.8E-18 148.6 5.2 167 40-216 7-202 (501)
309 TIGR01257 rim_protein retinal- 99.4 1.4E-13 3.1E-18 168.3 7.9 157 40-206 1940-2122(2272)
310 TIGR03375 type_I_sec_LssB type 99.4 7.9E-14 1.7E-18 156.7 5.3 137 40-180 466-634 (694)
311 TIGR01842 type_I_sec_PrtD type 99.4 2.1E-13 4.6E-18 149.2 8.3 137 40-180 319-487 (544)
312 TIGR00958 3a01208 Conjugate Tr 99.4 7.6E-14 1.6E-18 157.6 4.9 137 40-180 481-650 (711)
313 PTZ00265 multidrug resistance 99.4 9.1E-14 2E-18 167.5 5.6 165 40-215 1168-1420(1466)
314 TIGR03719 ABC_ABC_ChvD ATP-bin 99.4 1.7E-13 3.7E-18 150.5 7.2 134 40-180 325-476 (552)
315 PRK10762 D-ribose transporter 99.4 2.3E-13 5E-18 147.6 7.9 152 51-212 266-453 (501)
316 PRK13657 cyclic beta-1,2-gluca 99.4 1.1E-13 2.4E-18 152.6 5.5 137 40-180 337-504 (588)
317 PRK10789 putative multidrug tr 99.4 1.1E-13 2.4E-18 152.4 5.4 163 40-214 316-510 (569)
318 PRK11819 putative ABC transpor 99.4 2.2E-13 4.8E-18 149.8 7.7 134 40-180 327-478 (556)
319 PRK13409 putative ATPase RIL; 99.4 2.6E-13 5.6E-18 150.6 7.9 157 40-213 343-513 (590)
320 cd00267 ABC_ATPase ABC (ATP-bi 99.4 3.6E-13 7.7E-18 123.9 7.5 121 41-205 3-131 (157)
321 COG1123 ATPase components of v 99.4 1.4E-13 3.1E-18 149.5 5.6 176 50-235 22-242 (539)
322 COG4618 ArpD ABC-type protease 99.4 3.3E-13 7.2E-18 144.4 8.1 153 49-212 348-530 (580)
323 PRK13546 teichoic acids export 99.4 4.3E-13 9.3E-18 134.8 8.2 149 48-212 35-201 (264)
324 COG4988 CydD ABC-type transpor 99.4 9.1E-14 2E-18 150.8 3.6 162 40-213 323-514 (559)
325 PRK10982 galactose/methyl gala 99.4 2.9E-13 6.2E-18 146.4 7.5 157 41-209 254-446 (491)
326 COG4161 ArtP ABC-type arginine 99.4 4.2E-13 9E-18 126.2 7.3 157 40-206 5-193 (242)
327 COG4674 Uncharacterized ABC-ty 99.4 3.3E-13 7.1E-18 130.1 6.7 137 40-179 8-179 (249)
328 COG1129 MglA ABC-type sugar tr 99.4 1.6E-13 3.4E-18 148.2 4.9 165 40-214 11-205 (500)
329 TIGR02203 MsbA_lipidA lipid A 99.4 2E-13 4.3E-18 149.5 5.8 163 40-214 333-528 (571)
330 PRK10938 putative molybdenum t 99.4 2.5E-13 5.4E-18 146.7 6.5 155 40-204 263-451 (490)
331 PRK10522 multidrug transporter 99.4 4.9E-13 1.1E-17 146.5 8.6 137 40-180 325-482 (547)
332 COG4619 ABC-type uncharacteriz 99.4 1.3E-13 2.8E-18 130.2 3.5 133 44-180 10-166 (223)
333 PRK11147 ABC transporter ATPas 99.4 3.7E-13 8E-18 150.3 7.7 134 40-180 322-473 (635)
334 TIGR01194 cyc_pep_trnsptr cycl 99.4 2.2E-13 4.9E-18 149.6 5.4 162 40-213 340-530 (555)
335 PRK15439 autoinducer 2 ABC tra 99.4 4.4E-13 9.6E-18 145.9 7.5 147 52-208 278-457 (510)
336 cd03237 ABC_RNaseL_inhibitor_d 99.4 3.4E-13 7.3E-18 134.1 5.9 143 52-209 9-171 (246)
337 PRK10636 putative ABC transpor 99.4 5.3E-13 1.2E-17 149.2 8.1 138 40-180 4-182 (638)
338 TIGR01257 rim_protein retinal- 99.4 3.9E-13 8.5E-18 164.6 7.4 157 40-207 931-1113(2272)
339 COG4148 ModC ABC-type molybdat 99.4 2.3E-13 5.1E-18 136.9 4.4 192 55-253 16-234 (352)
340 PRK10535 macrolide transporter 99.4 7.5E-13 1.6E-17 148.3 8.9 158 40-207 7-197 (648)
341 TIGR01192 chvA glucan exporter 99.4 4.7E-13 1E-17 148.0 7.2 137 40-180 337-504 (585)
342 PRK13545 tagH teichoic acids e 99.4 6.5E-13 1.4E-17 144.8 7.3 153 40-208 24-197 (549)
343 TIGR02204 MsbA_rel ABC transpo 99.4 3.4E-13 7.3E-18 148.0 5.2 162 40-213 340-534 (576)
344 COG0488 Uup ATPase components 99.4 7.6E-13 1.7E-17 144.9 7.9 134 40-180 6-186 (530)
345 PTZ00265 multidrug resistance 99.4 3E-13 6.6E-18 163.0 5.2 164 40-214 385-640 (1466)
346 TIGR01846 type_I_sec_HlyB type 99.4 3.6E-13 7.9E-18 151.5 5.2 137 40-180 458-626 (694)
347 cd03236 ABC_RNaseL_inhibitor_d 99.4 3.7E-13 8E-18 134.7 4.5 157 39-207 2-192 (255)
348 PLN03130 ABC transporter C fam 99.4 3.2E-13 6.9E-18 164.2 4.5 163 40-214 1240-1433(1622)
349 COG4172 ABC-type uncharacteriz 99.4 6.4E-13 1.4E-17 139.1 6.0 133 47-182 297-461 (534)
350 cd03291 ABCC_CFTR1 The CFTR su 99.4 6.2E-13 1.3E-17 135.0 5.7 129 40-180 42-192 (282)
351 PRK10636 putative ABC transpor 99.4 8.4E-13 1.8E-17 147.7 7.2 134 40-180 315-463 (638)
352 PLN03232 ABC transporter C fam 99.3 3.1E-13 6.7E-18 163.5 3.3 163 40-214 1237-1430(1495)
353 COG4172 ABC-type uncharacteriz 99.3 1.4E-12 3.1E-17 136.5 7.7 149 48-206 21-210 (534)
354 COG4136 ABC-type uncharacteriz 99.3 2.6E-13 5.7E-18 126.2 1.6 138 40-180 5-167 (213)
355 TIGR00954 3a01203 Peroxysomal 99.3 1.4E-12 3E-17 146.4 7.3 133 40-180 454-615 (659)
356 PTZ00243 ABC transporter; Prov 99.3 6.2E-13 1.4E-17 161.3 4.7 163 40-214 1311-1505(1560)
357 TIGR00957 MRP_assoc_pro multi 99.3 6.2E-13 1.3E-17 161.2 4.4 163 40-214 1287-1480(1522)
358 COG4167 SapF ABC-type antimicr 99.3 7.3E-13 1.6E-17 126.7 3.9 131 48-181 24-183 (267)
359 TIGR03771 anch_rpt_ABC anchore 99.3 1.1E-12 2.4E-17 127.8 5.2 145 58-212 1-171 (223)
360 KOG0055 Multidrug/pheromone ex 99.3 1.2E-12 2.5E-17 152.1 6.2 179 34-237 984-1195(1228)
361 TIGR00955 3a01204 The Eye Pigm 99.3 7E-13 1.5E-17 147.7 4.2 156 48-213 36-225 (617)
362 PRK15177 Vi polysaccharide exp 99.3 9E-13 2E-17 128.0 4.4 120 52-180 2-137 (213)
363 TIGR00956 3a01205 Pleiotropic 99.3 1.2E-12 2.7E-17 157.3 6.3 164 41-214 763-962 (1394)
364 PRK11147 ABC transporter ATPas 99.3 2.2E-12 4.8E-17 144.1 7.9 135 40-180 6-189 (635)
365 KOG2702 Predicted panthothenat 99.3 3.6E-12 7.8E-17 125.3 8.2 169 67-237 120-318 (323)
366 cd03238 ABC_UvrA The excision 99.3 1.3E-12 2.8E-17 124.2 4.8 137 49-212 7-147 (176)
367 PF00005 ABC_tran: ABC transpo 99.3 3.5E-13 7.5E-18 120.2 0.2 121 53-176 1-137 (137)
368 COG4778 PhnL ABC-type phosphon 99.3 8.4E-12 1.8E-16 118.3 9.0 153 50-212 24-210 (235)
369 COG4133 CcmA ABC-type transpor 99.3 3.2E-12 6.9E-17 122.5 5.8 155 40-204 5-180 (209)
370 PRK13409 putative ATPase RIL; 99.3 2E-12 4.4E-17 143.5 4.7 168 32-212 64-269 (590)
371 KOG0056 Heavy metal exporter H 99.3 1.9E-12 4E-17 138.0 3.5 139 38-180 538-707 (790)
372 COG4987 CydC ABC-type transpor 99.3 1.6E-12 3.5E-17 140.0 2.5 138 39-180 338-507 (573)
373 PLN03073 ABC transporter F fam 99.2 9.7E-12 2.1E-16 140.9 7.8 132 40-180 511-660 (718)
374 TIGR01271 CFTR_protein cystic 99.2 1.4E-11 3.1E-16 149.1 8.5 163 40-214 1220-1412(1490)
375 PLN03140 ABC transporter G fam 99.2 5.7E-12 1.2E-16 151.9 4.6 155 49-213 892-1078(1470)
376 PLN03140 ABC transporter G fam 99.2 1.5E-11 3.2E-16 148.4 7.7 148 49-206 177-389 (1470)
377 TIGR01187 potA spermidine/putr 99.2 7.9E-12 1.7E-16 129.1 3.9 131 71-208 1-155 (325)
378 KOG0061 Transporter, ABC super 99.2 1.7E-11 3.6E-16 136.8 5.6 171 49-229 42-245 (613)
379 KOG3308 Uncharacterized protei 99.2 2.2E-11 4.8E-16 117.5 5.2 166 65-239 3-186 (225)
380 TIGR00956 3a01205 Pleiotropic 99.2 1.5E-11 3.2E-16 148.2 4.8 148 49-206 73-262 (1394)
381 PLN03073 ABC transporter F fam 99.1 2E-11 4.4E-16 138.3 4.2 138 40-180 180-377 (718)
382 COG4586 ABC-type uncharacteriz 99.1 2.3E-11 5E-16 122.3 4.0 128 48-180 35-189 (325)
383 PLN03130 ABC transporter C fam 99.1 2.3E-11 4.9E-16 148.2 4.3 158 40-214 617-800 (1622)
384 TIGR00957 MRP_assoc_pro multi 99.1 4.3E-11 9.2E-16 145.4 5.8 131 40-180 639-793 (1522)
385 COG1134 TagH ABC-type polysacc 99.1 9.3E-11 2E-15 116.3 7.1 122 46-180 36-180 (249)
386 COG1119 ModF ABC-type molybden 99.1 1.6E-10 3.5E-15 114.7 8.4 134 39-180 33-204 (257)
387 COG4107 PhnK ABC-type phosphon 99.1 3.8E-11 8.2E-16 114.3 3.6 139 41-182 10-186 (258)
388 COG1101 PhnK ABC-type uncharac 99.1 4.1E-11 9E-16 117.2 3.5 155 50-213 19-208 (263)
389 PLN03232 ABC transporter C fam 99.1 3.4E-11 7.4E-16 146.0 3.6 132 40-180 617-773 (1495)
390 KOG0059 Lipid exporter ABCA1 a 99.1 1.3E-10 2.8E-15 134.7 8.0 161 35-205 562-749 (885)
391 COG5265 ATM1 ABC-type transpor 99.1 5.4E-11 1.2E-15 125.4 3.9 165 38-214 263-458 (497)
392 PRK13477 bifunctional pantoate 99.1 6E-10 1.3E-14 121.7 11.5 188 43-239 265-485 (512)
393 COG0488 Uup ATPase components 99.1 1E-10 2.2E-15 128.3 5.2 139 35-180 319-472 (530)
394 TIGR01271 CFTR_protein cystic 99.0 1E-10 2.2E-15 141.9 4.4 121 50-180 439-581 (1490)
395 PTZ00243 ABC transporter; Prov 99.0 2.3E-10 4.9E-15 139.3 5.0 125 46-180 669-815 (1560)
396 cd02020 CMPK Cytidine monophos 99.0 5.9E-09 1.3E-13 93.4 11.4 143 68-238 1-145 (147)
397 cd02022 DPCK Dephospho-coenzym 98.9 1.1E-09 2.5E-14 103.5 4.7 160 68-243 1-177 (179)
398 COG4138 BtuD ABC-type cobalami 98.9 2.4E-09 5.2E-14 102.2 6.7 163 53-226 15-204 (248)
399 COG3954 PrkB Phosphoribulokina 98.9 1.2E-08 2.6E-13 98.4 11.3 181 68-250 7-223 (289)
400 COG4240 Predicted kinase [Gene 98.9 3.1E-08 6.8E-13 97.8 13.0 165 63-229 47-272 (300)
401 KOG0054 Multidrug resistance-a 98.8 2.1E-09 4.7E-14 127.5 4.2 144 45-199 1148-1320(1381)
402 cd03270 ABC_UvrA_I The excisio 98.8 3.6E-09 7.7E-14 103.9 4.0 65 141-212 131-197 (226)
403 cd03278 ABC_SMC_barmotin Barmo 98.8 1.3E-09 2.8E-14 105.1 0.4 119 54-180 14-150 (197)
404 KOG2878 Predicted kinase [Gene 98.7 1.3E-07 2.8E-12 91.9 13.1 165 61-226 25-253 (282)
405 COG4615 PvdE ABC-type sideroph 98.7 3.2E-09 6.9E-14 111.5 2.1 158 40-208 325-503 (546)
406 KOG0062 ATPase component of AB 98.7 3.4E-09 7.3E-14 114.1 2.1 138 40-180 83-231 (582)
407 PF13207 AAA_17: AAA domain; P 98.7 1.3E-08 2.8E-13 88.8 4.9 115 68-207 1-119 (121)
408 PRK07261 topology modulation p 98.7 2.8E-08 6E-13 93.7 7.3 124 68-226 2-127 (171)
409 KOG0065 Pleiotropic drug resis 98.7 2.1E-08 4.6E-13 117.5 7.6 158 48-215 802-991 (1391)
410 cd03272 ABC_SMC3_euk Eukaryoti 98.7 4.8E-09 1E-13 102.9 1.9 125 48-180 13-195 (243)
411 PRK08118 topology modulation p 98.7 1.7E-07 3.7E-12 88.3 12.2 135 68-237 3-153 (167)
412 PRK06217 hypothetical protein; 98.6 1.6E-07 3.5E-12 89.0 10.4 105 68-202 3-108 (183)
413 PRK14732 coaE dephospho-CoA ki 98.6 3.1E-08 6.8E-13 95.8 5.6 159 68-242 1-176 (196)
414 KOG0054 Multidrug resistance-a 98.6 6.6E-09 1.4E-13 123.4 0.3 148 49-213 533-702 (1381)
415 PRK14730 coaE dephospho-CoA ki 98.6 4.9E-08 1.1E-12 94.1 5.2 160 68-242 3-180 (195)
416 cd07890 CYTH-like_AC_IV-like A 98.6 3.3E-07 7.1E-12 86.1 10.2 145 262-407 11-168 (169)
417 cd03271 ABC_UvrA_II The excisi 98.6 4.5E-08 9.8E-13 98.8 4.5 153 50-212 8-230 (261)
418 KOG0927 Predicted transporter 98.6 2.4E-08 5.2E-13 108.2 2.5 136 40-180 78-254 (614)
419 cd03240 ABC_Rad50 The catalyti 98.6 2E-08 4.2E-13 97.4 1.5 126 68-202 24-170 (204)
420 PRK14734 coaE dephospho-CoA ki 98.6 1.7E-07 3.6E-12 90.8 7.8 162 67-242 2-180 (200)
421 COG4178 ABC-type uncharacteriz 98.6 7.1E-08 1.5E-12 106.8 5.8 137 40-180 395-548 (604)
422 cd03279 ABC_sbcCD SbcCD and ot 98.5 2.8E-08 6E-13 96.4 2.0 140 54-206 18-185 (213)
423 cd00820 PEPCK_HprK Phosphoenol 98.5 1.5E-07 3.3E-12 83.1 6.0 69 50-129 2-77 (107)
424 PRK14731 coaE dephospho-CoA ki 98.5 1.8E-07 3.9E-12 90.9 6.8 74 159-242 115-188 (208)
425 PRK00081 coaE dephospho-CoA ki 98.5 1.5E-07 3.2E-12 90.4 5.9 160 67-242 3-179 (194)
426 COG1245 Predicted ATPase, RNas 98.4 1.7E-07 3.7E-12 100.1 5.2 112 59-180 363-488 (591)
427 cd03274 ABC_SMC4_euk Eukaryoti 98.4 2.6E-08 5.7E-13 97.2 -1.1 37 46-90 13-49 (212)
428 COG4170 SapD ABC-type antimicr 98.4 1.2E-06 2.7E-11 86.0 9.9 181 46-236 16-247 (330)
429 TIGR00017 cmk cytidylate kinas 98.4 3.4E-07 7.3E-12 90.0 5.5 76 160-236 121-197 (217)
430 cd02019 NK Nucleoside/nucleoti 98.4 6.2E-07 1.3E-11 72.4 5.7 59 68-186 1-63 (69)
431 PRK06762 hypothetical protein; 98.4 2.3E-06 5E-11 79.2 10.0 106 66-199 2-117 (166)
432 TIGR00152 dephospho-CoA kinase 98.3 3.3E-07 7.2E-12 87.1 4.0 161 68-242 1-178 (188)
433 COG1102 Cmk Cytidylate kinase 98.3 2.6E-07 5.7E-12 87.1 3.0 145 68-238 2-153 (179)
434 KOG4203 Armadillo/beta-Catenin 98.3 5.4E-09 1.2E-13 113.4 -9.5 319 141-493 16-342 (473)
435 KOG0060 Long-chain acyl-CoA tr 98.3 3.2E-07 6.9E-12 100.3 3.8 159 41-214 437-627 (659)
436 PF01121 CoaE: Dephospho-CoA k 98.3 4.2E-07 9.1E-12 87.0 3.2 159 67-241 1-176 (180)
437 PRK14733 coaE dephospho-CoA ki 98.3 1.6E-06 3.4E-11 84.8 7.2 159 66-241 6-182 (204)
438 TIGR02322 phosphon_PhnN phosph 98.3 5.1E-06 1.1E-10 77.8 10.1 27 68-94 3-29 (179)
439 PRK14737 gmk guanylate kinase; 98.3 1.5E-06 3.2E-11 83.5 6.2 155 65-240 3-169 (186)
440 COG1437 CyaB Adenylate cyclase 98.2 1E-05 2.2E-10 77.2 11.5 148 262-410 13-175 (178)
441 TIGR03263 guanyl_kin guanylate 98.2 4E-06 8.7E-11 78.3 8.7 25 68-92 3-27 (180)
442 KOG0927 Predicted transporter 98.2 5E-07 1.1E-11 98.2 2.2 134 40-180 392-542 (614)
443 COG2401 ABC-type ATPase fused 98.2 1.5E-06 3.2E-11 92.3 5.4 163 31-207 368-561 (593)
444 TIGR02173 cyt_kin_arch cytidyl 98.2 4.6E-06 1E-10 76.8 8.2 75 160-239 75-155 (171)
445 PRK09518 bifunctional cytidyla 98.2 4.6E-06 1E-10 95.0 9.8 73 161-238 139-211 (712)
446 cd03276 ABC_SMC6_euk Eukaryoti 98.2 2.3E-06 5E-11 82.7 6.3 119 54-180 13-146 (198)
447 COG1129 MglA ABC-type sugar tr 98.2 4.9E-06 1.1E-10 90.7 9.2 145 52-206 274-453 (500)
448 PRK00300 gmk guanylate kinase; 98.2 9.5E-06 2.1E-10 77.5 9.8 28 61-91 3-30 (205)
449 PTZ00451 dephospho-CoA kinase; 98.2 3.1E-06 6.6E-11 84.9 6.6 71 160-240 118-189 (244)
450 cd03273 ABC_SMC2_euk Eukaryoti 98.2 8.3E-07 1.8E-11 88.1 2.6 37 144-180 163-203 (251)
451 PRK00023 cmk cytidylate kinase 98.1 4.3E-06 9.4E-11 82.5 7.0 78 160-239 123-203 (225)
452 PRK03333 coaE dephospho-CoA ki 98.1 2.3E-06 5E-11 91.2 4.8 255 67-347 2-287 (395)
453 PRK01184 hypothetical protein; 98.1 5.2E-06 1.1E-10 78.2 6.3 80 159-242 80-164 (184)
454 PLN02422 dephospho-CoA kinase 98.1 4E-06 8.6E-11 83.5 5.7 161 68-242 3-180 (232)
455 PRK04182 cytidylate kinase; Pr 98.1 1.5E-05 3.3E-10 73.8 9.2 23 68-90 2-24 (180)
456 PRK04040 adenylate kinase; Pro 98.1 8.8E-06 1.9E-10 78.3 7.5 154 66-239 2-171 (188)
457 PRK10078 ribose 1,5-bisphospho 98.1 1.2E-05 2.7E-10 76.3 8.4 24 68-91 4-27 (186)
458 TIGR03238 dnd_assoc_3 dnd syst 98.1 2.3E-06 5E-11 92.8 3.8 49 50-103 19-69 (504)
459 KOG0066 eIF2-interacting prote 98.1 2.9E-06 6.2E-11 90.5 4.3 137 41-180 268-445 (807)
460 COG1245 Predicted ATPase, RNas 98.1 1E-05 2.2E-10 86.9 8.2 328 32-413 65-447 (591)
461 TIGR01360 aden_kin_iso1 adenyl 98.1 1E-05 2.2E-10 75.7 7.1 23 68-90 5-27 (188)
462 KOG0066 eIF2-interacting prote 98.0 3.9E-06 8.5E-11 89.5 4.1 128 41-180 590-737 (807)
463 PRK05541 adenylylsulfate kinas 98.0 4.7E-06 1E-10 78.0 4.3 35 66-100 7-43 (176)
464 COG0283 Cmk Cytidylate kinase 98.0 5.6E-05 1.2E-09 74.4 11.5 77 160-238 121-199 (222)
465 cd03283 ABC_MutS-like MutS-lik 98.0 2.2E-06 4.8E-11 83.0 1.6 34 52-90 16-49 (199)
466 PRK00349 uvrA excinuclease ABC 98.0 1.3E-05 2.7E-10 93.9 7.4 65 142-213 825-892 (943)
467 COG3845 ABC-type uncharacteriz 98.0 8.3E-05 1.8E-09 80.6 12.8 176 40-226 260-481 (501)
468 KOG0064 Peroxisomal long-chain 98.0 4.6E-06 1E-10 90.7 3.3 149 47-213 492-668 (728)
469 KOG0065 Pleiotropic drug resis 98.0 1.6E-05 3.6E-10 93.9 8.0 148 50-206 128-313 (1391)
470 PRK11860 bifunctional 3-phosph 97.9 2E-05 4.4E-10 89.2 6.8 76 161-238 558-635 (661)
471 cd01130 VirB11-like_ATPase Typ 97.9 2.1E-05 4.5E-10 74.9 5.8 44 55-101 17-61 (186)
472 cd03275 ABC_SMC1_euk Eukaryoti 97.9 8.2E-06 1.8E-10 81.1 2.8 35 146-180 154-192 (247)
473 PF13238 AAA_18: AAA domain; P 97.8 6.2E-06 1.3E-10 71.7 1.1 22 69-90 1-22 (129)
474 PRK00131 aroK shikimate kinase 97.8 3.7E-05 8.1E-10 70.6 5.7 32 68-100 6-37 (175)
475 PRK13949 shikimate kinase; Pro 97.8 1.7E-05 3.6E-10 74.9 3.1 33 68-101 3-35 (169)
476 COG0194 Gmk Guanylate kinase [ 97.7 0.00026 5.7E-09 68.4 10.4 143 68-224 6-156 (191)
477 KOG2355 Predicted ABC-type tra 97.7 8E-05 1.7E-09 73.3 6.9 58 41-101 17-76 (291)
478 PRK00635 excinuclease ABC subu 97.7 5.3E-05 1.2E-09 93.1 7.0 65 142-213 804-871 (1809)
479 TIGR00630 uvra excinuclease AB 97.6 0.00011 2.3E-09 86.1 8.0 64 142-212 823-889 (924)
480 PRK08356 hypothetical protein; 97.6 9.5E-05 2.1E-09 70.8 5.4 34 66-101 5-38 (195)
481 PRK05057 aroK shikimate kinase 97.6 0.00017 3.7E-09 68.1 6.7 32 68-100 6-37 (172)
482 PRK03839 putative kinase; Prov 97.6 0.00043 9.4E-09 65.0 9.4 34 68-102 2-35 (180)
483 cd03239 ABC_SMC_head The struc 97.5 2.8E-05 6.1E-10 74.0 1.1 93 68-180 24-131 (178)
484 cd03277 ABC_SMC5_euk Eukaryoti 97.5 0.00024 5.3E-09 69.5 7.6 39 142-180 121-163 (213)
485 KOG0062 ATPase component of AB 97.5 4.8E-05 1E-09 82.7 2.6 132 41-180 366-515 (582)
486 COG0237 CoaE Dephospho-CoA kin 97.5 0.00011 2.3E-09 71.8 4.4 161 66-243 2-179 (201)
487 PRK09825 idnK D-gluconate kina 97.5 0.00018 3.9E-09 68.4 5.8 60 62-127 2-67 (176)
488 cd03280 ABC_MutS2 MutS2 homolo 97.4 0.00012 2.7E-09 70.3 4.4 32 54-87 18-49 (200)
489 PF01928 CYTH: CYTH domain; I 97.4 0.00046 9.9E-09 65.0 8.1 132 275-409 30-183 (185)
490 PRK12269 bifunctional cytidyla 97.4 0.00051 1.1E-08 79.9 9.9 76 161-239 191-266 (863)
491 smart00072 GuKc Guanylate kina 97.4 0.0011 2.4E-08 62.9 10.3 159 67-239 3-166 (184)
492 COG1428 Deoxynucleoside kinase 97.4 0.00025 5.4E-09 69.7 5.5 57 177-238 126-186 (216)
493 PF00625 Guanylate_kin: Guanyl 97.4 0.00033 7.2E-09 66.2 6.3 25 68-92 4-28 (183)
494 PRK12338 hypothetical protein; 97.3 0.00028 6.1E-09 73.4 5.8 27 65-91 3-29 (319)
495 cd03227 ABC_Class2 ABC-type Cl 97.3 0.00014 3.1E-09 67.7 3.1 87 68-180 23-114 (162)
496 PRK14530 adenylate kinase; Pro 97.3 0.00053 1.2E-08 66.6 6.8 33 68-101 5-37 (215)
497 cd03282 ABC_MSH4_euk MutS4 hom 97.3 0.00033 7.1E-09 68.3 5.2 39 49-90 15-53 (204)
498 cd02021 GntK Gluconate kinase 97.3 0.00095 2.1E-08 60.6 7.9 34 68-102 1-34 (150)
499 TIGR02788 VirB11 P-type DNA tr 97.3 0.0002 4.4E-09 73.7 3.8 42 56-100 137-179 (308)
500 PRK07196 fliI flagellum-specif 97.3 0.00045 9.8E-09 74.7 6.4 76 50-129 143-235 (434)
No 1
>PLN02318 phosphoribulokinase/uridine kinase
Probab=100.00 E-value=2.1e-130 Score=1056.51 Aligned_cols=500 Identities=87% Similarity=1.310 Sum_probs=488.9
Q ss_pred CCCCCCCCCCCCCCcCCccccceeeEEeecceeeeceeeeeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHH
Q 010501 1 MAQDTSSGADSPRRRPGLLRDQVQLVKKKDSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKT 80 (509)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~s~~~~~~~i~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKT 80 (509)
||+|+ ++++||++|.||+|+|++|+++|++++|+++|+++.++|+.|++.+++++++..+..+++++|||+||||||||
T Consensus 1 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~sfd~g~~~~ira~qlL~~~~~~riIIGIaGpSGSGKT 79 (656)
T PLN02318 1 MAQDT-SGAESPRRRHGLLKDQVQLVKRKDSDRYEIVPIQDPLSFEKGFFVVIRACQLLAQKNDGIILVGVAGPSGAGKT 79 (656)
T ss_pred CCccc-ccCcCcccccchhHHhhhheeeccCCceEEEeCCCccccccchhhhhHHHHHHHhcCCCeEEEEEECCCCCcHH
Confidence 89999 88999999999999999999999999999999999999999999999999999888788999999999999999
Q ss_pred HHHHHHHhhCCCeeEEEECCccCccccccccCCCCCCCchhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCcc
Q 010501 81 VFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSR 160 (509)
Q Consensus 81 TLar~L~~llp~~g~I~~D~y~~~~r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~ 160 (509)
||+++|++.++.++.|++|+|+...+..+++||+|.++|++.+.++|..|++|+.+.+|.|||..+.+.+.....+++.+
T Consensus 80 TLAk~LaglLp~vgvIsmDdy~~~~~~i~~nfD~P~a~D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~ 159 (656)
T PLN02318 80 VFTEKVLNFMPSIAVISMDNYNDSSRIIDGNFDDPRLTDYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSR 159 (656)
T ss_pred HHHHHHHhhCCCcEEEEEcceecchhhhCccCCChhhcchhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCc
Confidence 99999999999899999999987666678899999999999999999999999999999999999988776677889999
Q ss_pred EEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEcCC
Q 010501 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (509)
Q Consensus 161 VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~ 240 (509)
|||+||+|+|++++++++|++|||++|.+++++||+.||+.++|+++++++++|..+|+|+|..||+|++++|||+|.|+
T Consensus 160 VVIVEGIyaL~~~Lr~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q~~~~VkP~y~~FIeP~kk~ADIII~n~ 239 (656)
T PLN02318 160 IVIIEGIYALSEKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIVNK 239 (656)
T ss_pred EEEEechhhccHhHHhhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHHHHHhhcchHHHHhCcchhcceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcCCCCcceeeccCCcccHHHHHHHhcccccccccceeeEEEeCCCCCccccccceeeeccCceEEEEeeecccCCC
Q 010501 241 FNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSP 320 (509)
Q Consensus 241 ~~p~~g~~~~~~i~ks~~~~~~~~i~~~l~~~~~~~~~~~~diyl~pp~~~~~~~~~~ir~r~~~~~~~l~~~~~i~~~~ 320 (509)
|+|+.++++|+||+|+..++.+++|++.|++...+.+++++|||++||+.++++|++|||+|+|||+|+|+++|||+|+|
T Consensus 240 f~P~~g~~np~~Ilk~~~~~~~~~i~~~L~~~~~~~~~~~~DiYl~~P~~d~~~~~e~LRvR~~~Gk~~Ltyke~i~dgp 319 (656)
T PLN02318 240 FNPFSGFQNPTYILKSSRSVTVEQIKAVLSEDHTETTEETYDIYLLPPGEDPETCQSYLRMRNRDGKYSLMFEEWVTDEP 319 (656)
T ss_pred CCCCCCCCCCeEEecCCccccHHHHHHHhhhccccccceeeEEEecCCCCCchhccceEEEEecCCEEEEEEecccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEeccccceeeceeecccccccCceEEEEEEeccceeecCcEEEEehhhhhcCcceEEEeccChhHHHHHHhhhcCccCc
Q 010501 321 FIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGRDRLYVKYVGEQLGLDGSY 400 (509)
Q Consensus 321 f~~~P~~~f~v~~~~~~gl~~lgy~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~l~~~~~~ 400 (509)
|||+|+++||||++++||||+|||+++|+++|.+++|++|+|+|++||+|+|+++|+||||.+|+.|.++|++|||+|+|
T Consensus 320 ~ii~pk~~fEv~v~~~~gL~aLGy~~~a~vkk~r~iy~~g~v~i~lD~ve~Lg~~FvqIeg~~r~~V~~~a~kLGl~g~~ 399 (656)
T PLN02318 320 FIISPRITFEVSVRLLGGLMALGYTIATILKRSSHVFSDDKVCVKIDWLEQLNRKYVQVQGKDRLVVKDVAEQLGLEGSY 399 (656)
T ss_pred eecCcceeEEEeeehHhHHHHcCCceEEEEEEEEEEEecCCEEEEeehhhccCCeeEEEehhHHHHHHHHHHHcCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHhhhcccccCCChhhhccccccccccCCcHHHhhhhhhhhhccccccccccccccccccccccccccccc
Q 010501 401 VPRTYIEQIQLEKLVNDVMALPDDLKTKLSIDDDLVSSPKEALSRASADRRTKYLSRSISNSFSNQREKNLTKLARVAVN 480 (509)
Q Consensus 401 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (509)
||+|||||||||||++|+|+||||||+|||+|+|+||||||||+|||||+||||+++|||||||+||+||++|+++++++
T Consensus 400 i~~SYlE~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (656)
T PLN02318 400 IPRTYIEQIQLEKLVNEVMALPEDLKTKLSLDDDLVSSPKEALSRASADRRNKNLKSGLSHSYSTQRDKNLSKLTGLAVT 479 (656)
T ss_pred ccccHHHHHHHHHhHHHHhhccHHhhhhcccccccccCcHHHhhhhhhhhhhhhcccCcccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCCccccCCceeEE
Q 010501 481 NRRFDGRTPESPASLANQVSII 502 (509)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~ 502 (509)
|||||+|+++|||++ |||+|.
T Consensus 480 ~~~~~~~~~~~~~~~-~~~~~~ 500 (656)
T PLN02318 480 NRRFDERNSESPAAL-NQGAIT 500 (656)
T ss_pred ccccCCCCCCCchhh-ccchHH
Confidence 999999999999999 999874
No 2
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=2.5e-37 Score=300.59 Aligned_cols=175 Identities=37% Similarity=0.672 Sum_probs=164.5
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhhCC--CeeEEEECCccCccc------cccccCCCCCCCchhhHHHHHHhhccCcc
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDSSR------IIDGNFDDPRLTDYDTLLENIRGLKEGKA 135 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~llp--~~g~I~~D~y~~~~r------~i~~~fq~p~~~d~~tl~e~L~~L~~g~~ 135 (509)
+++++|||+|+|||||||+++.|...++ ..+.|+.|+|+.... ....+|++|.++|++.+.++|..|+.|++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 4578999999999999999999999995 678999999976432 34679999999999999999999999999
Q ss_pred eeccccccCCCCcCCCeeeeecCccEEEEecceeeec-cccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHH
Q 010501 136 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (509)
Q Consensus 136 i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d-Elr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y 214 (509)
+..|.|||..|.+.. ++..+.+.+|||+||+|+|+| ++++++|+||||++|.|+|++||+.||+.+||++++.++++|
T Consensus 86 v~~P~yd~~~~~r~~-~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~qy 164 (218)
T COG0572 86 VDLPVYDYKTHTREP-ETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQY 164 (218)
T ss_pred ccccccchhcccccC-CccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 999999999999976 788899999999999999997 999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHhhcCCCCceeEEEcC
Q 010501 215 SETVYPMYKAFIEPDLQTAHIKIIN 239 (509)
Q Consensus 215 ~~~V~P~~~~fIeP~k~~ADIII~n 239 (509)
..+|+|||++||+|++++||++||.
T Consensus 165 ~~~vkp~~~~fIeptk~~ADiiip~ 189 (218)
T COG0572 165 VKTVRPMYEQFIEPTKKYADIIIPS 189 (218)
T ss_pred HHhhChhhhhccCcccccceEEeec
Confidence 9999999999999999999999973
No 3
>PTZ00301 uridine kinase; Provisional
Probab=100.00 E-value=9e-33 Score=268.75 Aligned_cols=193 Identities=29% Similarity=0.491 Sum_probs=165.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC-----CC-eeEEEECCccCcccc------ccccCCCCCCCchhhHHHHHHhhccC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM-----PS-IAVITMDNYNDSSRI------IDGNFDDPRLTDYDTLLENIRGLKEG 133 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll-----p~-~g~I~~D~y~~~~r~------i~~~fq~p~~~d~~tl~e~L~~L~~g 133 (509)
.++|||+|+||||||||++.|...+ +. +..+++|+|+..... -..+|++|.++|++.+.+.|..|+.|
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 4699999999999999999887554 33 458899999865432 13689999999999999999999999
Q ss_pred cceeccccccCCCCcCCCeeeeecCccEEEEecceeee-ccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 134 KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 134 ~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~-dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
+.+..|.|||..+.+.. ....+.+.+|||+||+|+++ +++++++|++|||+++.++++.||+.||+.+||++++++++
T Consensus 83 ~~i~~P~yd~~~~~~~~-~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~ 161 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSD-TAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIE 161 (210)
T ss_pred CcccCCCcccccCCcCC-ceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHH
Confidence 99999999999998875 56778889999999999986 79999999999999999999999999999999999999999
Q ss_pred HHHHhhhhHHHHhhcCCCCceeEEEcCCCCCCcCCCCcceeeccCCcccHHHHHHHhc
Q 010501 213 QISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMS 270 (509)
Q Consensus 213 ~y~~~V~P~~~~fIeP~k~~ADIII~n~~~p~~g~~~~~~i~ks~~~~~~~~i~~~l~ 270 (509)
+|.+++.|++..||+|++.+||+||+++.+ +.. +..++..+|.++|.
T Consensus 162 ~~~~~v~~~~~~~I~p~k~~ADiIi~~~~~------~~~-----~~~~~~~~~~~~~~ 208 (210)
T PTZ00301 162 QYEATVRPMYYAYVEPSKVYADIIVPSWKD------NSV-----AVGVLRAKLNHDLE 208 (210)
T ss_pred HHHHhhcccHHHHcCccccCCcEEEcCCCc------chH-----HHHHHHHHHHHHcc
Confidence 999999999999999999999999964332 221 34455566665553
No 4
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.97 E-value=7.5e-31 Score=262.62 Aligned_cols=181 Identities=22% Similarity=0.349 Sum_probs=157.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCC----CeeEEEECCccCccc-----------cccccCCC--CCCCchhhHHHHHHhh
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSR-----------IIDGNFDD--PRLTDYDTLLENIRGL 130 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp----~~g~I~~D~y~~~~r-----------~i~~~fq~--p~~~d~~tl~e~L~~L 130 (509)
+|||+|+|||||||+++.|...+. .+..|..|+|+...+ ..+.+|+| |+++|++.+.+++..+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~L 80 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRTY 80 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHHH
Confidence 589999999999999999998872 478899999987432 13579999 9999999999999999
Q ss_pred ccCcceeccccccC----------CCCcCCCeeeeecCccEEEEecceeee----ccccCCCCeEEEeecCchHHHHHHH
Q 010501 131 KEGKAVQVPIYDFK----------SSSRIGYRTLEVPSSRIVIIEGIYALS----EKLRPLIDLRVSVTGGVHFDLVKRV 196 (509)
Q Consensus 131 ~~g~~i~~P~yD~~----------~~~rsgg~~~~v~~a~VLIVEGi~aL~----dElr~lLDlkIfVd~d~dirLiRRI 196 (509)
++|+.++.|.|+|. .+.+.+++ ..+.++++||+||++.++ .++++++|+||||+++.++|++|||
T Consensus 81 ~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~-~~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irRI 159 (277)
T cd02029 81 GETGRGRSRYYLHSDEEAAPFNQEPGTFTPWE-DLPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQKI 159 (277)
T ss_pred HcCCCcccceeeccccccccccCCCCccCCcc-cccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHHH
Confidence 99999999999873 34444433 235899999999999544 4899999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEE-----cCCCCCCcCCCCc
Q 010501 197 FRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI-----INKFNPFTGFQNP 250 (509)
Q Consensus 197 ~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII-----~n~~~p~~g~~~~ 250 (509)
.||..+||++.++|+++|..++ |+|..||+|++.+|||++ ..+.|||.....|
T Consensus 160 ~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fqr~p~vdts~pf~~~~~p 217 (277)
T cd02029 160 HRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQRVPTVDTSNPFIARDIP 217 (277)
T ss_pred HhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEeccCcccCCCcccccCCC
Confidence 9999999999999999999998 999999999999999999 3788898766655
No 5
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.97 E-value=3.8e-31 Score=252.25 Aligned_cols=170 Identities=36% Similarity=0.676 Sum_probs=147.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCC--------CeeEEEECCccCcc--------ccccccCCCCCCCchhhHHHHHHhhc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMP--------SIAVITMDNYNDSS--------RIIDGNFDDPRLTDYDTLLENIRGLK 131 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp--------~~g~I~~D~y~~~~--------r~i~~~fq~p~~~d~~tl~e~L~~L~ 131 (509)
||||+||||||||||++.|...+. ..+.+.+|+|+... ..-.++|++|.++|+..+.+.|..|+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 799999999999999999999883 25678889886432 11346789999999999999999999
Q ss_pred cCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeec-cccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHH
Q 010501 132 EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (509)
Q Consensus 132 ~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d-Elr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~V 210 (509)
+|+.+..|.|||..+.+.+ ......+.+|||+||+|+|++ ++++++|++|||+++.++++.||+.||+.+||++++++
T Consensus 81 ~g~~i~~p~yd~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~~ 159 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDP-WIIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEEV 159 (194)
T ss_dssp TTSCEEEEEEETTTTEEEE-EEEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHHH
T ss_pred CCCccccccccccccccee-eeeecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCcceeE
Confidence 9999999999999988876 455677899999999999984 79999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhHHHHhhcCCCCceeEEEcC
Q 010501 211 IHQISETVYPMYKAFIEPDLQTAHIKIIN 239 (509)
Q Consensus 211 i~~y~~~V~P~~~~fIeP~k~~ADIII~n 239 (509)
+++|. .++|+|..||+|++.+||++|++
T Consensus 160 ~~~~~-~~~~~~~~~I~p~~~~ADivi~~ 187 (194)
T PF00485_consen 160 IAQYE-RVRPGYERYIEPQKERADIVIPS 187 (194)
T ss_dssp HHHHH-THHHHHHHCTGGGGGG-SEEEES
T ss_pred EEEee-cCChhhhhheeccccccEEEECC
Confidence 99998 99999999999999999999974
No 6
>PRK15453 phosphoribulokinase; Provisional
Probab=99.96 E-value=2.9e-28 Score=245.61 Aligned_cols=185 Identities=21% Similarity=0.355 Sum_probs=156.0
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhCC----CeeEEEECCccCccc-----------cccccCCC--CCCCchhhHHHHH
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSR-----------IIDGNFDD--PRLTDYDTLLENI 127 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~llp----~~g~I~~D~y~~~~r-----------~i~~~fq~--p~~~d~~tl~e~L 127 (509)
++.+|||+|+|||||||+++.|+..+. ....|+.|+|+...+ ..+.+|++ |++++++.+.+++
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~~l 83 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQLF 83 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHHHH
Confidence 356999999999999999999998772 467899999985321 12458999 9999999999999
Q ss_pred HhhccCcceeccccccC-----CCCcCCCe---eee-ecCccEEEEecceeee----ccccCCCCeEEEeecCchHHHHH
Q 010501 128 RGLKEGKAVQVPIYDFK-----SSSRIGYR---TLE-VPSSRIVIIEGIYALS----EKLRPLIDLRVSVTGGVHFDLVK 194 (509)
Q Consensus 128 ~~L~~g~~i~~P~yD~~-----~~~rsgg~---~~~-v~~a~VLIVEGi~aL~----dElr~lLDlkIfVd~d~dirLiR 194 (509)
..+++++.+..|.|++. .+.+..+. ... .+++++||+||++.++ .+++.++|++|||+++.++|++|
T Consensus 84 ~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~ir 163 (290)
T PRK15453 84 REYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEWIQ 163 (290)
T ss_pred HHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHHHH
Confidence 99999999999988643 24444332 112 3679999999999985 26899999999999999999999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEE-----cCCCCCCcCCCCc
Q 010501 195 RVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI-----INKFNPFTGFQNP 250 (509)
Q Consensus 195 RI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII-----~n~~~p~~g~~~~ 250 (509)
||.||..+||++.++|+++|..+. |+|..||.|++.+|||++ ..+.|||.....|
T Consensus 164 RI~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInfqrvp~vdts~pf~~~~ip 223 (290)
T PRK15453 164 KIHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINFQRVPTVDTSNPFIARDIP 223 (290)
T ss_pred HHHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEEEeCCccCCCCcccccCCC
Confidence 999999999999999999999995 999999999999999998 4778888766655
No 7
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.95 E-value=5.2e-28 Score=236.55 Aligned_cols=173 Identities=20% Similarity=0.311 Sum_probs=148.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccCcccc---ccc--cCCCCCCCchhhHHHHHHhhcc-Ccc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDSSRI---IDG--NFDDPRLTDYDTLLENIRGLKE-GKA 135 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp------~~g~I~~D~y~~~~r~---i~~--~fq~p~~~d~~tl~e~L~~L~~-g~~ 135 (509)
+|||+|+||||||||++.|.+.+. .+..|++|+|+..... .+. .+..|.++|...+.+.|..++. ++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~~~ 80 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGFPESYDMEALLKFLKDIKSGKKN 80 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCcHHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCCCc
Confidence 589999999999999999999872 4678899999765421 121 2456889999999999999998 478
Q ss_pred eeccccccCCCCcCCCeeeeecCccEEEEecceeeecc------ccCCCCeEEEeecCchHH---HHHHHHHHHHHcCCC
Q 010501 136 VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK------LRPLIDLRVSVTGGVHFD---LVKRVFRDIQRVGQE 206 (509)
Q Consensus 136 i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dE------lr~lLDlkIfVd~d~dir---LiRRI~RD~~erG~t 206 (509)
+..|.||+..+.+.......+.+.+|||+||+|+|+++ +++++|++|||++|.+++ +++|..|+.+++|++
T Consensus 81 v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~r~ 160 (220)
T cd02025 81 VKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAFSD 160 (220)
T ss_pred EEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999887765555788999999999999964 899999999999999985 888888999999999
Q ss_pred HHHHHHH----------------HHHhhhhHHHHhhcCCCCceeEEEcCC
Q 010501 207 PEEIIHQ----------------ISETVYPMYKAFIEPDLQTAHIKIINK 240 (509)
Q Consensus 207 ~e~Vi~~----------------y~~~V~P~~~~fIeP~k~~ADIII~n~ 240 (509)
+..++++ |.+.++|++.+||.|++.+||+||+.+
T Consensus 161 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~ 210 (220)
T cd02025 161 PDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKG 210 (220)
T ss_pred chhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeC
Confidence 8877764 778999999999999999999999743
No 8
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.95 E-value=8.7e-28 Score=227.69 Aligned_cols=169 Identities=46% Similarity=0.741 Sum_probs=149.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC----CCeeEEEECCccCcc---ccccccCCCCCCCchhhHHHHHHhhccCcceeccc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDSS---RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI 140 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll----p~~g~I~~D~y~~~~---r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~ 140 (509)
+|+|+|++|||||||++.|...+ ..+..|++|+|+... +....+++++..+|++.+.++|..+++++.+..|.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~g~~d~~~~~d~~~l~~~l~~l~~~~~~~~p~ 80 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPRKTPRDEDGNYDFESILDLDLLNKNLHDLLNGKEVELPI 80 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCcccccccCCCCCCCccccHHHHHHHHHHHHCCCeeeccc
Confidence 58999999999999999999987 367899999998643 23456788888899999999999999999999999
Q ss_pred cccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchH-HHHHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 010501 141 YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHF-DLVKRVFRDIQRVGQEPEEIIHQISETVY 219 (509)
Q Consensus 141 yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~di-rLiRRI~RD~~erG~t~e~Vi~~y~~~V~ 219 (509)
||+.++.+.+.....+.+.+|||+||+|++++++++++|++|||+++.++ |+.||+.||+.+||++.++++++| . +.
T Consensus 81 yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~-~-~~ 158 (179)
T cd02028 81 YDFRTGKRRGYRKLKLPPSGVVILEGIYALNERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMW-P-SV 158 (179)
T ss_pred ceeECCccCCCceEEeCCCCEEEEecHHhcCHhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhc-c-cc
Confidence 99999998775567788999999999999999999999999999999998 999999999999999999999996 3 45
Q ss_pred hHHHHhh-cCCCCceeEEEc
Q 010501 220 PMYKAFI-EPDLQTAHIKII 238 (509)
Q Consensus 220 P~~~~fI-eP~k~~ADIII~ 238 (509)
|+++.|+ .|.+..||+++.
T Consensus 159 ~~~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 159 PSGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred cCchhhcCCCchhccceecc
Confidence 6666555 678999999874
No 9
>PLN02348 phosphoribulokinase
Probab=99.95 E-value=5.9e-27 Score=245.20 Aligned_cols=175 Identities=27% Similarity=0.493 Sum_probs=154.5
Q ss_pred ecCCccEEEEEECCCCCcHHHHHHHHHhhCC-------------------CeeEEEECCccCccc----cccccCCCCCC
Q 010501 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-------------------SIAVITMDNYNDSSR----IIDGNFDDPRL 117 (509)
Q Consensus 61 ~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp-------------------~~g~I~~D~y~~~~r----~i~~~fq~p~~ 117 (509)
...+++++|||+|+||||||||++.|...+. .+..|++|+|+...+ ..+..+.+|..
T Consensus 44 ~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~~r~~~g~t~ldP~a 123 (395)
T PLN02348 44 AADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRTGRKEKGVTALDPRA 123 (395)
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCCChhhHhhcCCccCCccc
Confidence 4456789999999999999999999999873 235899999976443 23556678899
Q ss_pred CchhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeec-cccCCCCeEEEeecCchHHHHHHH
Q 010501 118 TDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRV 196 (509)
Q Consensus 118 ~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d-Elr~lLDlkIfVd~d~dirLiRRI 196 (509)
++++.+.+.|..|++|+.+.+|.|||..+.+.+. ..+.+.+|||+||+|++++ .+++++|++|||+++.++++.||+
T Consensus 124 ~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~--e~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvrl~RRI 201 (395)
T PLN02348 124 NNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPP--ELIEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKFAWKI 201 (395)
T ss_pred ccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCc--EEcCCCcEEEEechhhccCccccccCcEEEEEECCHHHHHHHHH
Confidence 9999999999999999999999999999887653 3578899999999999985 799999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEc
Q 010501 197 FRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (509)
Q Consensus 197 ~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~ 238 (509)
.||+.+||++.+++++++. .+.|+|.+||+|.+.+||+||.
T Consensus 202 ~RD~~eRG~S~EeV~~~i~-ar~pd~~~yI~pqk~~ADiVI~ 242 (395)
T PLN02348 202 QRDMAERGHSLESIKASIE-ARKPDFDAYIDPQKQYADVVIE 242 (395)
T ss_pred HhhHhhcCCCHHHHHHHHH-hcCcchhhhcccccccCCEEEE
Confidence 9999999999999999875 5699999999999999999994
No 10
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.94 E-value=2.2e-26 Score=221.16 Aligned_cols=176 Identities=36% Similarity=0.620 Sum_probs=158.2
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhC--CCeeEEEECCccCccc------cccccCCCCCCCchhhHHHHHHhhccCcce
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYNDSSR------IIDGNFDDPRLTDYDTLLENIRGLKEGKAV 136 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~ll--p~~g~I~~D~y~~~~r------~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i 136 (509)
++.+|||+|+||||||||++.|.+.+ ..+..+++|+|+.... .....|++|.++++..+.+.|..++.+..+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~v 84 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAGKAI 84 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcCCcc
Confidence 46799999999999999999999998 4678899999965331 234678899999999999999999999999
Q ss_pred eccccccCCCCcCCCeeeeecCccEEEEecceeee-ccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 010501 137 QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 215 (509)
Q Consensus 137 ~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~-dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~ 215 (509)
..|.||+..+.+.. +...+.+.+++|+||.+++. +++.+.+|.+|||+++.++++.|++.||..++|.+.++++++|.
T Consensus 85 ~~p~~d~~~~~~~~-~~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~~~ 163 (209)
T PRK05480 85 EIPVYDYTEHTRSK-ETIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQYL 163 (209)
T ss_pred ccCcccccccccCC-CeEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHHHH
Confidence 99999999988765 45567788999999999997 68999999999999999999999999999999999999999999
Q ss_pred HhhhhHHHHhhcCCCCceeEEEcCCC
Q 010501 216 ETVYPMYKAFIEPDLQTAHIKIINKF 241 (509)
Q Consensus 216 ~~V~P~~~~fIeP~k~~ADIII~n~~ 241 (509)
..+.|+|..|++|.+..||++|.++.
T Consensus 164 ~~~~~~~~~~i~~~~~~AD~vI~~~~ 189 (209)
T PRK05480 164 STVRPMHLQFIEPSKRYADIIIPEGG 189 (209)
T ss_pred HhhhhhHHhhccHhhcceeEEecCCC
Confidence 99999999999999999999998754
No 11
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.93 E-value=1.4e-25 Score=215.92 Aligned_cols=172 Identities=37% Similarity=0.659 Sum_probs=155.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCC--CeeEEEECCccCcc------ccccccCCCCCCCchhhHHHHHHhhccCcceec
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQV 138 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp--~~g~I~~D~y~~~~------r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~ 138 (509)
.+|||+|+||||||||++.|++.++ ..+.+++|+|+... ...+++|+.|.+++...+.+.|..+..+..+..
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~v~~ 86 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNGSPIDV 86 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCCCCEec
Confidence 3999999999999999999999984 67899999986432 235678999999999999999999999999999
Q ss_pred cccccCCCCcCCCeeeeecCccEEEEecceeee-ccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 010501 139 PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISET 217 (509)
Q Consensus 139 P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~-dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~ 217 (509)
|.||+..+.+.. +...+.+..++|+||.++++ +.+.+.+|.+|||+++.+.++.|++.||...+|++.++++++|...
T Consensus 87 p~yd~~~~~~~~-~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~~~~~~ 165 (207)
T TIGR00235 87 PVYDYVNHTRPK-ETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQYRKT 165 (207)
T ss_pred ccceeecCCCCC-ceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHHHHHHh
Confidence 999999887744 45667889999999999987 4688899999999999999999999999999999999999999999
Q ss_pred hhhHHHHhhcCCCCceeEEEcC
Q 010501 218 VYPMYKAFIEPDLQTAHIKIIN 239 (509)
Q Consensus 218 V~P~~~~fIeP~k~~ADIII~n 239 (509)
++|+|..|++|.+..||+||++
T Consensus 166 ~~~~~~~~i~~~~~~Ad~vi~~ 187 (207)
T TIGR00235 166 VRPMYEQFVEPTKQYADLIIPE 187 (207)
T ss_pred hhhhHHHhCcccccccEEEEcC
Confidence 9999999999999999999974
No 12
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.93 E-value=1.6e-25 Score=227.59 Aligned_cols=180 Identities=19% Similarity=0.244 Sum_probs=146.8
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHhhC---C---CeeEEEECCccCccc---cc--cccCCCCCCCchhhHHHHHHhhc
Q 010501 63 NHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDSSR---II--DGNFDDPRLTDYDTLLENIRGLK 131 (509)
Q Consensus 63 Ge~~iIIgI~GpSGSGKTTLar~L~~ll---p---~~g~I~~D~y~~~~r---~i--~~~fq~p~~~d~~tl~e~L~~L~ 131 (509)
...|.+|||+||||||||||+++|.+++ + .+..+++|+|+.... .. ...+..|.++|...+.+.+..++
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCccccCCChhccHHHHHHHHHHHH
Confidence 4568999999999999999999998887 2 355689999976532 11 23456789999999999999999
Q ss_pred cCcc-eeccccccCCCCcCCCeeeeecCccEEEEecceeee-cc----------ccCCCCeEEEeecCchHHHHHHHHHH
Q 010501 132 EGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EK----------LRPLIDLRVSVTGGVHFDLVKRVFRD 199 (509)
Q Consensus 132 ~g~~-i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~-dE----------lr~lLDlkIfVd~d~dirLiRRI~RD 199 (509)
.|.. +..|.||+..+.+.++....+.+++|||+||+++|+ ++ +++++|++||||+|.+.++.|++.|.
T Consensus 139 ~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i~R~ 218 (290)
T TIGR00554 139 SGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINRF 218 (290)
T ss_pred CCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHHHHH
Confidence 9885 999999999999988777778999999999999997 34 36999999999999999887777775
Q ss_pred H--HHcC-------------CCHH----HHHHHHHHhhhhHHHHhhcCCCCceeEEEcCCCC
Q 010501 200 I--QRVG-------------QEPE----EIIHQISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (509)
Q Consensus 200 ~--~erG-------------~t~e----~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~~~ 242 (509)
. .+++ .+.+ .+++.|...+.|++.+||.|++.+||+|++.+.+
T Consensus 219 ~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~~~ 280 (290)
T TIGR00554 219 LKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGAN 280 (290)
T ss_pred HHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecCCC
Confidence 3 3333 3332 3345579999999999999999999999975543
No 13
>PRK05439 pantothenate kinase; Provisional
Probab=99.93 E-value=6.8e-25 Score=224.74 Aligned_cols=180 Identities=18% Similarity=0.245 Sum_probs=150.6
Q ss_pred cCCccEEEEEECCCCCcHHHHHHHHHhhC------CCeeEEEECCccCcccc-----ccccCCCCCCCchhhHHHHHHhh
Q 010501 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDSSRI-----IDGNFDDPRLTDYDTLLENIRGL 130 (509)
Q Consensus 62 ~Ge~~iIIgI~GpSGSGKTTLar~L~~ll------p~~g~I~~D~y~~~~r~-----i~~~fq~p~~~d~~tl~e~L~~L 130 (509)
....|++|||+|++||||||+++.|...+ +.++.|++|||+..... .--.++.|.++|...+.+.|..+
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~~~l~~~~l~~~kg~Pes~D~~~l~~~L~~L 161 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLMKRKGFPESYDMRALLRFLSDV 161 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCHHHHhhhhccccCCCcccccHHHHHHHHHHH
Confidence 34568999999999999999999999876 25789999999865422 11246679999999999999999
Q ss_pred ccCcc-eeccccccCCCCcCCCeeeeecCccEEEEecceeee-ccc------cCCCCeEEEeecCchHHHHHHHHHHHHH
Q 010501 131 KEGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKL------RPLIDLRVSVTGGVHFDLVKRVFRDIQR 202 (509)
Q Consensus 131 ~~g~~-i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~-dEl------r~lLDlkIfVd~d~dirLiRRI~RD~~e 202 (509)
++|+. +..|.||+..+.+..++...+.+.+|||+||+++|+ +++ ++++|++|||+++.+....|++.|.++.
T Consensus 162 k~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~~l 241 (311)
T PRK05439 162 KSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFLKL 241 (311)
T ss_pred HcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHHHH
Confidence 99986 999999999999887777888999999999999996 565 9999999999999999777777776652
Q ss_pred ---------------cCCCHH----HHHHHHHHhhhhHHHHhhcCCCCceeEEEcCCC
Q 010501 203 ---------------VGQEPE----EIIHQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (509)
Q Consensus 203 ---------------rG~t~e----~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~~ 241 (509)
.|.+.+ .+.++|...+.|++.+||.|++.+||+||+.+.
T Consensus 242 r~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~~ 299 (311)
T PRK05439 242 RETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKGA 299 (311)
T ss_pred HHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCCC
Confidence 355544 455667789999999999999999999997543
No 14
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.91 E-value=6.2e-24 Score=202.35 Aligned_cols=173 Identities=36% Similarity=0.651 Sum_probs=153.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC--CCeeEEEECCccCcc------ccccccCCCCCCCchhhHHHHHHhhccCcceecc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVP 139 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll--p~~g~I~~D~y~~~~------r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P 139 (509)
+|||+||||||||||+++|.+.+ ..+..+++|+|+... ......+++|..+++..+.+.+..+..+..+..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 58999999999999999999998 367899999997432 1234577888899999999999999999999999
Q ss_pred ccccCCCCcCCCeeeeecCccEEEEecceeee-ccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 010501 140 IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETV 218 (509)
Q Consensus 140 ~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~-dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V 218 (509)
.||+..+.+.... ..+.+.+++|+||.+++. +++.+.+|..|||+++.+.++.|++.||..+||++.+++++.|....
T Consensus 81 ~~d~~~~~~~~~~-~~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~ 159 (198)
T cd02023 81 VYDFKTHSRLKET-VTVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFV 159 (198)
T ss_pred ccccccCcccCCc-eecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHhh
Confidence 9999998876533 367788999999999998 57889999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhcCCCCceeEEEcCCC
Q 010501 219 YPMYKAFIEPDLQTAHIKIINKF 241 (509)
Q Consensus 219 ~P~~~~fIeP~k~~ADIII~n~~ 241 (509)
.|+|..|++|.+..||++|.++-
T Consensus 160 ~~~~~~~i~~~~~~aD~ii~~~~ 182 (198)
T cd02023 160 KPMHEQFIEPTKRYADVIIPRGG 182 (198)
T ss_pred hhhHHHhCccchhceeEEECCCC
Confidence 99999999999999999997644
No 15
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.90 E-value=2.2e-23 Score=210.30 Aligned_cols=168 Identities=29% Similarity=0.532 Sum_probs=146.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCC--CeeEEEECCccCcc----ccccccCCCCCCCchhhHHHHHHhhccCcceecccc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDSS----RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY 141 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp--~~g~I~~D~y~~~~----r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~y 141 (509)
+|||+|+||||||||++.|+++++ ....|++|+|+... ...++.+++|...++..+.+++..+++++.+..|.|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P~y 80 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHSLDRKGRKETGITALDPRANNFDLMYEQLKALKEGQAIEKPIY 80 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECcccccCCHHHHHHhhcccccccchhHHHHHHHHHHHHCCCCcccccc
Confidence 589999999999999999999984 34478999986432 234667778888888889999999999999999999
Q ss_pred ccCCCCcCCCeeeeecCccEEEEecceeeec-cccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhh
Q 010501 142 DFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYP 220 (509)
Q Consensus 142 D~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d-Elr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P 220 (509)
++..+...+ ...+.+.+++|+||.+++++ .+++++|++|||+++.++++.|++.|++.++|++.++++++|.. .+|
T Consensus 81 ~~~~~~~~~--~~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~-r~~ 157 (273)
T cd02026 81 NHVTGLIDP--PELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEA-RKP 157 (273)
T ss_pred cccCCCcCC--cEEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHh-hch
Confidence 999887544 23467789999999999875 89999999999999999999999999999999999999999864 699
Q ss_pred HHHHhhcCCCCceeEEEc
Q 010501 221 MYKAFIEPDLQTAHIKII 238 (509)
Q Consensus 221 ~~~~fIeP~k~~ADIII~ 238 (509)
.+.+||+|++.+||++|.
T Consensus 158 ~~~~~I~P~~~~ADvVI~ 175 (273)
T cd02026 158 DFEAYIDPQKQYADVVIQ 175 (273)
T ss_pred hHHHHhccccccCcEEEE
Confidence 999999999999999995
No 16
>PRK07429 phosphoribulokinase; Provisional
Probab=99.90 E-value=3.8e-23 Score=213.50 Aligned_cols=173 Identities=27% Similarity=0.496 Sum_probs=150.5
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHhhCC--CeeEEEECCccCcc----ccccccCCCCCCCchhhHHHHHHhhccCcce
Q 010501 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDSS----RIIDGNFDDPRLTDYDTLLENIRGLKEGKAV 136 (509)
Q Consensus 63 Ge~~iIIgI~GpSGSGKTTLar~L~~llp--~~g~I~~D~y~~~~----r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i 136 (509)
.+++++|||+|+||||||||++.|++.++ ....+++|+|+... +..++...+|...+++.+.+++..++.++.+
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~~~~~~r~~~g~~~l~p~~~~~d~l~~~l~~L~~g~~I 84 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHSYDRKQRKELGITALDPRANNLDIMYEHLKALKTGQPI 84 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEecccccCCHHHHHhcCCcccCccchHHHHHHHHHHHHHCCCce
Confidence 35689999999999999999999999984 35689999996432 2245566678888889999999999999999
Q ss_pred eccccccCCCCcCCCeeeeecCccEEEEecceeeec-cccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 010501 137 QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 215 (509)
Q Consensus 137 ~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d-Elr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~ 215 (509)
..|.||+..+.... ...+.+.+++|+||.+++++ .+++++|++|||+++.++++.||+.|+..++|++.+++.+++.
T Consensus 85 ~~P~yd~~~g~~~~--~~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~i~ 162 (327)
T PRK07429 85 LKPIYNHETGTFDP--PEYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAEIE 162 (327)
T ss_pred ecceeecCCCCcCC--cEecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 99999999887654 34567789999999998875 6789999999999999999999999999999999999998875
Q ss_pred HhhhhHHHHhhcCCCCceeEEEc
Q 010501 216 ETVYPMYKAFIEPDLQTAHIKII 238 (509)
Q Consensus 216 ~~V~P~~~~fIeP~k~~ADIII~ 238 (509)
..+|.+.+||+|.+..||++|.
T Consensus 163 -~r~pd~~~yI~P~k~~ADiVI~ 184 (327)
T PRK07429 163 -AREPDFEAYIRPQRQWADVVIQ 184 (327)
T ss_pred -HhCccHhhhhcccccCCCEEEE
Confidence 4699999999999999999995
No 17
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=99.90 E-value=2e-24 Score=232.26 Aligned_cols=279 Identities=26% Similarity=0.443 Sum_probs=231.9
Q ss_pred cCCccEEEEEECCCCCcHHHHHHHHHhhC---------CCeeEEEECCccCc--c-----ccc-cccCCCCCCCchhhHH
Q 010501 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM---------PSIAVITMDNYNDS--S-----RII-DGNFDDPRLTDYDTLL 124 (509)
Q Consensus 62 ~Ge~~iIIgI~GpSGSGKTTLar~L~~ll---------p~~g~I~~D~y~~~--~-----r~i-~~~fq~p~~~d~~tl~ 124 (509)
.+..|+++|+.|.++|||||.+..+...+ +..-.++.|.|+.. . ... .++|++|++++++++.
T Consensus 40 ~~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~~ 119 (473)
T KOG4203|consen 40 EGKEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELLY 119 (473)
T ss_pred cCcceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccCCCCcchhhHH
Confidence 45679999999999999999877776654 23344445544321 0 112 4899999999999999
Q ss_pred HHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeec-cccCCCCeEEEeecCchHHHHHHHHHHHHHc
Q 010501 125 ENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV 203 (509)
Q Consensus 125 e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d-Elr~lLDlkIfVd~d~dirLiRRI~RD~~er 203 (509)
..+..+.++..+..|.|++..+.+...+...+.++.++++||+++++| +.+++++.++|+|++.+.++.+|+.||+.++
T Consensus 120 ~~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~~ 199 (473)
T KOG4203|consen 120 LTLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVER 199 (473)
T ss_pred HHHhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhhh
Confidence 999999999999999999999999777788899999999999999995 8999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEcCCCCCCcCCCCcceeeccCCcccHHHHHHHhcccccccccceeeE
Q 010501 204 GQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDI 283 (509)
Q Consensus 204 G~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~~~p~~g~~~~~~i~ks~~~~~~~~i~~~l~~~~~~~~~~~~di 283 (509)
|++++.++.+|.+++.|.|..||+|++.+||++|+. .+.++. +..+.+.+|++.|...... .-+.++
T Consensus 200 g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~-----~~~n~v------ai~l~~~~i~~~L~~~~~~--~l~~~~ 266 (473)
T KOG4203|consen 200 GRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPR-----GGDNDV------AIDLIVQHILSILAEKSYV--RLYNNV 266 (473)
T ss_pred cccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeec-----cccccc------cceeeehhhhhhhhccccc--cccccc
Confidence 999999999999999999999999999999999963 333333 5566777777766543322 223368
Q ss_pred EEeCCCCCccccccceeeecc---------CceEEEEeeecccCCCeE----eccccceeeceeecccccccCceEEEEE
Q 010501 284 YLLPPGEDPDACQSYLRMRNR---------DGKYNLMFEEWVTDSPFI----ISPRITFEVSVRLLGGLMALGYTIATIL 350 (509)
Q Consensus 284 yl~pp~~~~~~~~~~ir~r~~---------~~~~~l~~~~~i~~~~f~----~~P~~~f~v~~~~~~gl~~lgy~~~~~~ 350 (509)
+.+|++++..++.++++...| +...++++++...+.||. .+|+ +..++|==.. .-.|++.+
T Consensus 267 ~~l~~t~~i~~~~t~~~~~~Ts~~~~~~~~~~~vrl~l~~~~~~~p~~~~~i~~~~-----~~~~~~~~~~-~~i~gv~i 340 (473)
T KOG4203|consen 267 LSLPDTNQIKGKLTLLRDHTTSRHPFSFYSDHLVRLVLEHGLGHLPYTEKRIVTPR-----GLAYSGVNFC-KQICGVSI 340 (473)
T ss_pred eecCCccccCCceeEeecCCcCCCCHHHHHHHHHHHHhhcccCcccceeeeEeccc-----ccchhccccc-chhccCCC
Confidence 899999999999999999999 444558889999999995 8898 7777554455 88888999
Q ss_pred Eeccceeec
Q 010501 351 KRSSHIFYD 359 (509)
Q Consensus 351 ~r~~~~~~~ 359 (509)
.|+|++++.
T Consensus 341 ~r~g~~~~~ 349 (473)
T KOG4203|consen 341 PRSGESMET 349 (473)
T ss_pred CcchhHHHH
Confidence 999999887
No 18
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.87 E-value=8e-24 Score=219.54 Aligned_cols=214 Identities=21% Similarity=0.190 Sum_probs=165.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq 113 (509)
.++++..+|...+++++||.+++|+ ++++.|||||||||++++|+|+. |+.|.|.++|.... .|.++++||
T Consensus 8 i~~v~k~yg~~~av~~isl~i~~Ge---f~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~VFQ 84 (352)
T COG3842 8 IRNVSKSFGDFTAVDDISLDIKKGE---FVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMVFQ 84 (352)
T ss_pred EEeeeeecCCeeEEecceeeecCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhcccceeec
Confidence 3568888899999999999999999 99999999999999999999998 99999999998543 367999999
Q ss_pred CCCCCchhhHHHHHHhhcc-Ccc----------------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeecccc
Q 010501 114 DPRLTDYDTLLENIRGLKE-GKA----------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~-g~~----------------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr 175 (509)
+..+|+++++.+|+.+-.. .+. +.. ..-++..+++|||+.|+++.++.|+.++..+|+|||.
T Consensus 85 ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPl 164 (352)
T COG3842 85 SYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPL 164 (352)
T ss_pred CcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcc
Confidence 9999999999999988433 110 111 2345667889999999999999999999999999999
Q ss_pred CCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEcCCCCCCcCCCCcceeec
Q 010501 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILK 255 (509)
Q Consensus 176 ~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~~~p~~g~~~~~~i~k 255 (509)
+.+|.++ ...+.+.+++-.++.|.|...|.|..
T Consensus 165 SaLD~kL------R~~mr~Elk~lq~~~giT~i~VTHDq----------------------------------------- 197 (352)
T COG3842 165 SALDAKL------REQMRKELKELQRELGITFVYVTHDQ----------------------------------------- 197 (352)
T ss_pred cchhHHH------HHHHHHHHHHHHHhcCCeEEEEECCH-----------------------------------------
Confidence 9999752 12222223333334454433333332
Q ss_pred cCCcccHHHHHHHhcccccccccceeeEEEeCCCCCcc---ccccceeeecc
Q 010501 256 STRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPD---ACQSYLRMRNR 304 (509)
Q Consensus 256 s~~~~~~~~i~~~l~~~~~~~~~~~~diyl~pp~~~~~---~~~~~ir~r~~ 304 (509)
+.++...+..++|+++.+.+.+.|.++|..|.+.+++ +..|++..+..
T Consensus 198 -eEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~fVA~FiG~~N~l~~~~~ 248 (352)
T COG3842 198 -EEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFIGESNIFEGKVV 248 (352)
T ss_pred -HHHhhhccceEEccCCceeecCCHHHHhhCcchHHHHHHhCcceeeeeeee
Confidence 2233344444679999999999999999999999887 56777776533
No 19
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.85 E-value=2.1e-22 Score=195.40 Aligned_cols=165 Identities=22% Similarity=0.211 Sum_probs=137.4
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------cccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~~ 110 (509)
.++++..+|...+|++|++.+.+|+ ++.|+||||||||||+|||.++- |+.|.|.+||.... ++.+++
T Consensus 5 i~~l~K~fg~~~VLkgi~l~v~~Ge---vv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 5 IKNLSKSFGDKEVLKGISLSVEKGE---VVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred EEeeeEEeCCeEEecCcceeEcCCC---EEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 4678888999999999999999999 99999999999999999999987 79999999995322 356899
Q ss_pred cCCCCCCCchhhHHHHHHhhc--c-Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeec
Q 010501 111 NFDDPRLTDYDTLLENIRGLK--E-GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~--~-g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d 172 (509)
+||++++|++.++.+|+..-- . +. .+.. -..|..+.++|||++|++++++.|.+++..+|.|
T Consensus 82 VFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFD 161 (240)
T COG1126 82 VFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFD 161 (240)
T ss_pred ecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeec
Confidence 999999999999999985421 0 10 1111 2345567789999999999999999999999999
Q ss_pred cccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHH
Q 010501 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (509)
Q Consensus 173 Elr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y 214 (509)
||++.||+ +-+.-...+.+++++.|.|..-|.|..
T Consensus 162 EPTSALDP-------Elv~EVL~vm~~LA~eGmTMivVTHEM 196 (240)
T COG1126 162 EPTSALDP-------ELVGEVLDVMKDLAEEGMTMIIVTHEM 196 (240)
T ss_pred CCcccCCH-------HHHHHHHHHHHHHHHcCCeEEEEechh
Confidence 99999997 445666778899999999977766654
No 20
>PRK06696 uridine kinase; Validated
Probab=99.85 E-value=8.5e-21 Score=185.10 Aligned_cols=178 Identities=18% Similarity=0.262 Sum_probs=140.9
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHhhCC----CeeEEEECCccCcccc-ccccCCCC-----CCCchhhHHHHHHhhc-
Q 010501 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSRI-IDGNFDDP-----RLTDYDTLLENIRGLK- 131 (509)
Q Consensus 63 Ge~~iIIgI~GpSGSGKTTLar~L~~llp----~~g~I~~D~y~~~~r~-i~~~fq~p-----~~~d~~tl~e~L~~L~- 131 (509)
+.++++|||.|++|||||||++.|+..++ ....+++|+|+..... ....+.+| ..+|+..+.+.+..+.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~~~~r~~~~~~~~~g~~~~~~d~~~L~~~l~~~l~ 98 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYEDAYDYTALRRLLLDPLG 98 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCCHHHHHHcCCCChhhcCccccCHHHHHHHHHhhcc
Confidence 45689999999999999999999999983 2345679999876422 11222232 5788888988877643
Q ss_pred cC--cceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHH
Q 010501 132 EG--KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (509)
Q Consensus 132 ~g--~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~ 209 (509)
.+ ..+..|.||+..+.........+.+..++|+||.+++.++++..+|.+|||+++.++++.|.+.||...+|. .++
T Consensus 99 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~g~-~~~ 177 (223)
T PRK06696 99 PNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGS-YEE 177 (223)
T ss_pred CCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHhhhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhhCC-chH
Confidence 33 246778899988765533445567788999999999888999999999999999999999999999988995 567
Q ss_pred HHHHHHHhhhhHHHHhhcCC--CCceeEEEcCCC
Q 010501 210 IIHQISETVYPMYKAFIEPD--LQTAHIKIINKF 241 (509)
Q Consensus 210 Vi~~y~~~V~P~~~~fIeP~--k~~ADIII~n~~ 241 (509)
+...|..++.|++..|+.+. +++||+||.|+-
T Consensus 178 ~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 178 AEKMYLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred HHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 78888899999999997655 889999997543
No 21
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.85 E-value=1.6e-20 Score=183.89 Aligned_cols=178 Identities=22% Similarity=0.309 Sum_probs=142.8
Q ss_pred cCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeE----EEECCccCccc---cccc--cCCCCCCCchhhHHHHHHhhc
Q 010501 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAV----ITMDNYNDSSR---IIDG--NFDDPRLTDYDTLLENIRGLK 131 (509)
Q Consensus 62 ~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~----I~~D~y~~~~r---~i~~--~fq~p~~~d~~tl~e~L~~L~ 131 (509)
...++.++||+|+||||||||++.|++.+ +..|. +++|+|+.... ..+. .+..|..++...+.+.+..++
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~~~~~~d~~~~~~~l~~l~ 108 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKGAPETFDVAGLAALLRRLR 108 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccCCCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999999998 33343 99999976532 1222 234677888888999999998
Q ss_pred cCc-ceeccccccCCCCcCCCeeeeecCccEEEEecceeeec-----cccCCCCeEEEeecCchHHHHHHHHHHHHHcCC
Q 010501 132 EGK-AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (509)
Q Consensus 132 ~g~-~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d-----Elr~lLDlkIfVd~d~dirLiRRI~RD~~erG~ 205 (509)
.+. .+..|.||+..+.............+++|+||.+++.+ .+...+|..|||+++.+.++.|.+.|+ .++|+
T Consensus 109 ~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~-~~~g~ 187 (229)
T PRK09270 109 AGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARK-LAGGL 187 (229)
T ss_pred cCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHH-HhcCC
Confidence 887 89999999988776553322223678999999999874 577789999999999998776666665 57899
Q ss_pred CHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEcCCC
Q 010501 206 EPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (509)
Q Consensus 206 t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~~ 241 (509)
+.+++.+.+.....|.+ .|++|.+..||+||.|+.
T Consensus 188 s~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~ 222 (229)
T PRK09270 188 SPEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMTA 222 (229)
T ss_pred CHHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEecC
Confidence 99999999988888887 799999999999997654
No 22
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.84 E-value=2e-22 Score=208.24 Aligned_cols=204 Identities=18% Similarity=0.201 Sum_probs=156.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq 113 (509)
.++++..+|...+++++++.++.|+ ++.|+||||||||||+++|+|+. |+.|.|.++|...+ .|.++++||
T Consensus 6 l~~v~K~yg~~~~l~~i~l~i~~Ge---f~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ 82 (338)
T COG3839 6 LKNVRKSFGSFEVLKDVNLDIEDGE---FVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQ 82 (338)
T ss_pred EeeeEEEcCCceeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeC
Confidence 4678888887769999999999999 99999999999999999999999 89999999998543 378999999
Q ss_pred CCCCCchhhHHHHHHhhcc-Cc----cee------------ccccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 114 DPRLTDYDTLLENIRGLKE-GK----AVQ------------VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~-g~----~i~------------~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
++.+|+++++++|+.+-.. .+ .+. -...++...+.|||++|+++.+++|+-++.+.|.|||.+
T Consensus 83 ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlS 162 (338)
T COG3839 83 NYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLS 162 (338)
T ss_pred CccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchh
Confidence 9999999999999988333 21 111 134677788999999999999999999999999999999
Q ss_pred CCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEcCCCCCCcCCCCcceeecc
Q 010501 177 LIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKS 256 (509)
Q Consensus 177 lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~~~p~~g~~~~~~i~ks 256 (509)
.||.++ ...+...+.+-.++.|.|...|.|...+
T Consensus 163 nLDa~l------R~~mr~ei~~lh~~l~~T~IYVTHDq~E---------------------------------------- 196 (338)
T COG3839 163 NLDAKL------RVLMRSEIKKLHERLGTTTIYVTHDQVE---------------------------------------- 196 (338)
T ss_pred HhhHHH------HHHHHHHHHHHHHhcCCcEEEEcCCHHH----------------------------------------
Confidence 999752 1112222333333345544444443211
Q ss_pred CCcccHHHHHHHhcccccccccceeeEEEeCCCCCccc
Q 010501 257 TRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPDA 294 (509)
Q Consensus 257 ~~~~~~~~i~~~l~~~~~~~~~~~~diyl~pp~~~~~~ 294 (509)
.|+.++-..+|.++.+.+.+.|.++|-.|.+.++++
T Consensus 197 --Amtladri~Vm~~G~i~Q~g~p~ely~~P~n~fVA~ 232 (338)
T COG3839 197 --AMTLADRIVVMNDGRIQQVGTPLELYERPANLFVAG 232 (338)
T ss_pred --HHhhCCEEEEEeCCeeeecCChHHHhhCccchhhhh
Confidence 122222223577889999999999999999998873
No 23
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.82 E-value=9.2e-21 Score=181.70 Aligned_cols=158 Identities=17% Similarity=0.205 Sum_probs=125.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCcccc------ccccCCCCCCCchhhHHHHHHhhccCcceecccc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRI------IDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIY 141 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~r~------i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~y 141 (509)
+|||+|++|||||||++.|+..++....|++|+|+..... -.++|++|.++|+..+.+.|..+++++.+..+.+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~~~ 80 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKFLR 80 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCccc
Confidence 5899999999999999999999877889999999765432 1258999999999999999999999887655555
Q ss_pred ccCCCCcCC-------------CeeeeecCccEEEEecceeee-ccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCC
Q 010501 142 DFKSSSRIG-------------YRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQE 206 (509)
Q Consensus 142 D~~~~~rsg-------------g~~~~v~~a~VLIVEGi~aL~-dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t 206 (509)
++....... .....+.+.++||+||.++++ +++++++|++|||++|.++++.||+.||... .|.-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~~~~~~~~ 160 (187)
T cd02024 81 SHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTGYVTLEGF 160 (187)
T ss_pred CccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCCccccCcc
Confidence 554332211 123456788999999999998 6999999999999999999999999988322 1111
Q ss_pred HHHHHHHHHHhhhhHHHHh
Q 010501 207 PEEIIHQISETVYPMYKAF 225 (509)
Q Consensus 207 ~e~Vi~~y~~~V~P~~~~f 225 (509)
-.+...+|.+.|+|+|.++
T Consensus 161 w~Dp~~yf~~~v~p~y~~~ 179 (187)
T cd02024 161 WPDPPGYFDGHVWPMYLKH 179 (187)
T ss_pred cCCCCcccccccchhHHHH
Confidence 2346778899999999864
No 24
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.82 E-value=2.5e-21 Score=195.81 Aligned_cols=215 Identities=20% Similarity=0.209 Sum_probs=160.7
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCc---c-----Ccccccccc
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY---N-----DSSRIIDGN 111 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y---~-----~~~r~i~~~ 111 (509)
++++..++.+.++++|++.++.|+ ++++.||||||||||+++|+|+. |+.|.|.+++. + ...+.++++
T Consensus 6 ~~~~~~~~~~~a~~di~l~i~~Ge---~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfv 82 (345)
T COG1118 6 NNVKKRFGAFGALDDISLDIKSGE---LVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFV 82 (345)
T ss_pred hhhhhhcccccccccceeeecCCc---EEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEE
Confidence 445556678889999999999999 99999999999999999999999 99999999998 2 223679999
Q ss_pred CCCCCCCchhhHHHHHHhhccCc---c---------------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeec
Q 010501 112 FDDPRLTDYDTLLENIRGLKEGK---A---------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (509)
Q Consensus 112 fq~p~~~d~~tl~e~L~~L~~g~---~---------------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d 172 (509)
|||+.+|+++++.+|+.+-..-. + ++. ..-+....+.|||+.++++.++++++|+..+|+|
T Consensus 83 FQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLD 162 (345)
T COG1118 83 FQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLD 162 (345)
T ss_pred EechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeec
Confidence 99999999999999999844211 0 000 2235556789999999999999999999999999
Q ss_pred cccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEcCCCCCCcCCCCcc
Q 010501 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPT 251 (509)
Q Consensus 173 Elr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~~~p~~g~~~~~ 251 (509)
||...||.++ ..-+|+-.|++.++ |.+..-|.|.-.+. .+.||-++
T Consensus 163 EPf~ALDa~v-------r~~lr~wLr~~~~~~~~ttvfVTHD~eea------------~~ladrvv-------------- 209 (345)
T COG1118 163 EPFGALDAKV-------RKELRRWLRKLHDRLGVTTVFVTHDQEEA------------LELADRVV-------------- 209 (345)
T ss_pred CCchhhhHHH-------HHHHHHHHHHHHHhhCceEEEEeCCHHHH------------HhhcceEE--------------
Confidence 9999999752 12223333333332 44322222221111 12233222
Q ss_pred eeeccCCcccHHHHHHHhcccccccccceeeEEEeCCCCCcc---ccccceeeeccCce
Q 010501 252 YILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPD---ACQSYLRMRNRDGK 307 (509)
Q Consensus 252 ~i~ks~~~~~~~~i~~~l~~~~~~~~~~~~diyl~pp~~~~~---~~~~~ir~r~~~~~ 307 (509)
+|++|.+++.+.+.++|-.|.+.++. ++.+.+-.+-.+|.
T Consensus 210 ----------------vl~~G~Ieqvg~p~ev~~~P~s~fV~~f~G~~n~~~~~v~~g~ 252 (345)
T COG1118 210 ----------------VLNQGRIEQVGPPDEVYDHPASRFVARFLGEVNVLPGEVILGQ 252 (345)
T ss_pred ----------------EecCCeeeeeCCHHHHhcCCCccceecccccceeccceeecce
Confidence 48889999999999999999998865 67887777777776
No 25
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.80 E-value=3.2e-20 Score=183.60 Aligned_cols=171 Identities=20% Similarity=0.209 Sum_probs=137.1
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccC--ccccccccCCCCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND--SSRIIDGNFDDPR 116 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~--~~r~i~~~fq~p~ 116 (509)
.++++..++...+|++++|.+.+|+ +|+|+||||||||||++.|+++. |..|.|.++|... +...++++||++.
T Consensus 6 i~~v~~~f~~~~vl~~i~L~v~~GE---fvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~~ 82 (248)
T COG1116 6 IEGVSKSFGGVEVLEDINLSVEKGE---FVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQEDA 82 (248)
T ss_pred EEeeEEEeCceEEeccceeEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccCc
Confidence 4678888888999999999999999 99999999999999999999999 8999999999854 3356899999999
Q ss_pred CCchhhHHHHHHhhccCcc----------------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCC
Q 010501 117 LTDYDTLLENIRGLKEGKA----------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (509)
Q Consensus 117 ~~d~~tl~e~L~~L~~g~~----------------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLD 179 (509)
+++|.++.+|+........ +.. ..-+...++.|||++|+++.++.++.++.++|.|||+..||
T Consensus 83 LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALD 162 (248)
T COG1116 83 LLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALD 162 (248)
T ss_pred ccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhh
Confidence 9999999999976433211 111 12355567899999999999999999999999999999999
Q ss_pred eEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 010501 180 LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVY 219 (509)
Q Consensus 180 lkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~ 219 (509)
.- ....+...+.+-..+.+.|+.-|.|...+-+.
T Consensus 163 al------TR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~ 196 (248)
T COG1116 163 AL------TREELQDELLRLWEETRKTVLLVTHDVDEAVY 196 (248)
T ss_pred HH------HHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHh
Confidence 62 22334444555556677777666666655544
No 26
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.76 E-value=1.3e-19 Score=179.69 Aligned_cols=204 Identities=20% Similarity=0.173 Sum_probs=153.4
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~~ 111 (509)
.+++++.++.+.+++++||.+++|+ ++.++|||||||||++++|.+++ |+.|.|.+||.... ++.++|+
T Consensus 4 ~~nvsk~y~~~~av~~v~l~I~~ge---f~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 4 FENVSKRYGNKKAVDDVNLTIEEGE---FLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred eeeeehhcCCceeeeeeeEEecCCe---EEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 3678888899999999999999999 99999999999999999999999 89999999998543 3679999
Q ss_pred CCCCCCCchhhHHHHHHhhccCc----------------ceec-c--ccccCCCCcCCCeeeeecCccEEEEecceeeec
Q 010501 112 FDDPRLTDYDTLLENIRGLKEGK----------------AVQV-P--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (509)
Q Consensus 112 fq~p~~~d~~tl~e~L~~L~~g~----------------~i~~-P--~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d 172 (509)
-|...+|+++++.+|+...-.-. .+.. | .-++.+++.|||+.|+++.+++|+.|+.++|-|
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMD 160 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMD 160 (309)
T ss_pred hhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeec
Confidence 99999999999999997532210 1112 3 245667899999999999999999999999999
Q ss_pred cccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEcCCCCCCcCCCCcce
Q 010501 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTY 252 (509)
Q Consensus 173 Elr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~~~p~~g~~~~~~ 252 (509)
||+..+|.-. ...+...+.+-.++-|.|..-|.|...+.. +-||
T Consensus 161 EPFgALDpI~------R~~lQ~e~~~lq~~l~kTivfVTHDidEA~------------kLad------------------ 204 (309)
T COG1125 161 EPFGALDPIT------RKQLQEEIKELQKELGKTIVFVTHDIDEAL------------KLAD------------------ 204 (309)
T ss_pred CCccccChhh------HHHHHHHHHHHHHHhCCEEEEEecCHHHHH------------hhhc------------------
Confidence 9999999721 111222222223333444333333222110 1122
Q ss_pred eeccCCcccHHHHHHHhcccccccccceeeEEEeCCCCCccc
Q 010501 253 ILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPDA 294 (509)
Q Consensus 253 i~ks~~~~~~~~i~~~l~~~~~~~~~~~~diyl~pp~~~~~~ 294 (509)
..++|+.+.+.+.+.|.+|.-.|++++++.
T Consensus 205 ------------ri~vm~~G~i~Q~~~P~~il~~Pan~FV~~ 234 (309)
T COG1125 205 ------------RIAVMDAGEIVQYDTPDEILANPANDFVED 234 (309)
T ss_pred ------------eEEEecCCeEEEeCCHHHHHhCccHHHHHH
Confidence 224578888899999999999999988763
No 27
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.76 E-value=3e-19 Score=186.25 Aligned_cols=212 Identities=19% Similarity=0.168 Sum_probs=152.2
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq 113 (509)
.+++++.++...++++++|.+++|+ +++|+||||||||||+++|+++. |+.|.|.+|+.... .+.++++||
T Consensus 9 ~~~l~~~~~~~~~l~~isl~i~~Ge---~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ 85 (351)
T PRK11432 9 LKNITKRFGSNTVIDNLNLTIKQGT---MVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMVFQ 85 (351)
T ss_pred EEeEEEEECCeEEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 4678888888889999999999999 99999999999999999999999 78999999997432 256899999
Q ss_pred CCCCCchhhHHHHHHhhcc--C--c------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 114 DPRLTDYDTLLENIRGLKE--G--K------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~--g--~------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
++.+|+.+++.+|+.+... + . .+.. ...+...+..|+|+.+++..+++++.++.++|.|||..
T Consensus 86 ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s 165 (351)
T PRK11432 86 SYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLS 165 (351)
T ss_pred CcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcc
Confidence 9999999999999986321 1 0 0111 22355567889999999999999999999999999999
Q ss_pred CCCeEEEeecCchHHHHHHHHHHHHH-cCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEcCCCCCCcCCCCcceeec
Q 010501 177 LIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILK 255 (509)
Q Consensus 177 lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~~~p~~g~~~~~~i~k 255 (509)
.+|.. ....++...+++.+ .|.+. +++.++.+......+.+
T Consensus 166 ~LD~~-------~r~~l~~~l~~l~~~~g~ti---------------------------i~vTHd~~e~~~laD~i---- 207 (351)
T PRK11432 166 NLDAN-------LRRSMREKIRELQQQFNITS---------------------------LYVTHDQSEAFAVSDTV---- 207 (351)
T ss_pred cCCHH-------HHHHHHHHHHHHHHhcCCEE---------------------------EEEcCCHHHHHHhCCEE----
Confidence 99983 23334444444432 24433 22222222111111221
Q ss_pred cCCcccHHHHHHHhcccccccccceeeEEEeCCCCCcc---ccccceeeec
Q 010501 256 STRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPD---ACQSYLRMRN 303 (509)
Q Consensus 256 s~~~~~~~~i~~~l~~~~~~~~~~~~diyl~pp~~~~~---~~~~~ir~r~ 303 (509)
.+|+++.+.+.+.+.++|-.|.+.+.+ +..+++..+.
T Consensus 208 -----------~vm~~G~i~~~g~~~~~~~~p~~~~~a~~~g~~n~~~~~~ 247 (351)
T PRK11432 208 -----------IVMNKGKIMQIGSPQELYRQPASRFMASFMGDANIFPATL 247 (351)
T ss_pred -----------EEEECCEEEEEcCHHHHHhCCCchHHHHhcCCceeEEEEE
Confidence 236667777777777888888876654 4455655443
No 28
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.76 E-value=3.4e-19 Score=178.22 Aligned_cols=165 Identities=18% Similarity=0.211 Sum_probs=131.3
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~~ 111 (509)
.++++|.|+...+++++||.+++|+ +++|+||||||||||+++|++++ |..|.|.+||.... .+.++++
T Consensus 5 ~~~ls~~y~~~~il~~ls~~i~~G~---i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 5 VENLSFGYGGKPILDDLSFSIPKGE---ITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred EEEEEEEECCeeEEecceEEecCCc---EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 5789999999999999999999999 99999999999999999999999 78999999997433 2568899
Q ss_pred CCCCCCCchhhHHHHHHhhccCcc-------------e-------ec-cccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 112 FDDPRLTDYDTLLENIRGLKEGKA-------------V-------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 112 fq~p~~~d~~tl~e~L~~L~~g~~-------------i-------~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
+|.+...+..++.+.+..-+.... + .. ..-++...+.|||++|++-.+++|+-+..++|
T Consensus 82 pQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLL 161 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILL 161 (258)
T ss_pred ccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEE
Confidence 998877777777777655432100 0 00 11233346789999999999999999999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHH-HcCCCHHHHHHHH
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ-RVGQEPEEIIHQI 214 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~-erG~t~e~Vi~~y 214 (509)
+|||++.||++ +.-.+-.+.+++. ++|.+...++|..
T Consensus 162 LDEPTs~LDi~-------~Q~evl~ll~~l~~~~~~tvv~vlHDl 199 (258)
T COG1120 162 LDEPTSHLDIA-------HQIEVLELLRDLNREKGLTVVMVLHDL 199 (258)
T ss_pred eCCCccccCHH-------HHHHHHHHHHHHHHhcCCEEEEEecCH
Confidence 99999999984 4444555666665 6798877777755
No 29
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.76 E-value=7.3e-19 Score=173.28 Aligned_cols=187 Identities=18% Similarity=0.217 Sum_probs=144.3
Q ss_pred eeeeEEEeCcEE----EeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc--------c
Q 010501 40 EDTLSFEKGFFI----VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------R 106 (509)
Q Consensus 40 ~~~lsf~~g~~~----iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~--------r 106 (509)
.+++++.++... ++++|||.+.+|+ ++||+|+||||||||+++|+++. |+.|.|.++|..... +
T Consensus 6 v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge---~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 6 VRNLSIVYGGGKFAFHALNNVSLEIERGE---TLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred EeceEEEecCCcchhhhhcceeEEecCCC---EEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 356777766555 9999999999999 99999999999999999999999 899999999964332 3
Q ss_pred cccccCCCCC--CCchhhHHHHHHhhccC--------------cceecc--ccccCCCCcCCCeeeeecCccEEEEecce
Q 010501 107 IIDGNFDDPR--LTDYDTLLENIRGLKEG--------------KAVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (509)
Q Consensus 107 ~i~~~fq~p~--~~d~~tl~e~L~~L~~g--------------~~i~~P--~yD~~~~~rsgg~~~~v~~a~VLIVEGi~ 168 (509)
.+.++||||. +.+..++.+.|.....- ..+..| ..++..++.|||+.++++.+++|+.|+.+
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~Pkl 162 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKL 162 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCE
Confidence 5678999984 46777887777653221 123333 46778899999999999999999999999
Q ss_pred eeeccccCCCCeEEEeecCchHHHHHHHHHHHH-HcCCCH------HHHHHHHHHhhhhHHHHhhcCCCCceeEE
Q 010501 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ-RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (509)
Q Consensus 169 aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~-erG~t~------e~Vi~~y~~~V~P~~~~fIeP~k~~ADII 236 (509)
+++||+.+.||..| -..+..+..+++ ++|.+. ..++.+.++++.-|++..+......+++.
T Consensus 163 LIlDEptSaLD~si-------Qa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~ 230 (252)
T COG1124 163 LILDEPTSALDVSV-------QAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230 (252)
T ss_pred EEecCchhhhcHHH-------HHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhh
Confidence 99999999999843 345566666665 456552 45667777888777777776666555554
No 30
>PRK07667 uridine kinase; Provisional
Probab=99.75 E-value=6.2e-18 Score=161.83 Aligned_cols=165 Identities=16% Similarity=0.307 Sum_probs=123.5
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhhCC----CeeEEEECCccCcccc-ccccCCC-----CCCCchhhHHHH-HHhhcc
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSRI-IDGNFDD-----PRLTDYDTLLEN-IRGLKE 132 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~llp----~~g~I~~D~y~~~~r~-i~~~fq~-----p~~~d~~tl~e~-L~~L~~ 132 (509)
+.+++|||.|++||||||+++.|...+. .+..+++|+|+..... ....+.+ ...+|...+.+. +..++.
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L~~ 94 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKLQN 94 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhhcC
Confidence 3468999999999999999999999872 4679999998653211 0111111 113566666655 477888
Q ss_pred CcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 133 GKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 133 g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
++.+..|.||+..+.+.. ....+++.+++|+||.+++..++++++|.+|||++|.++++.|.+.|+ | ....
T Consensus 95 ~~~i~~P~~d~~~~~~~~-~~~~~~~~~vvIvEG~~l~~~~~~~~~d~~v~V~~~~~~~~~R~~~r~----~----~~~~ 165 (193)
T PRK07667 95 ETKLTLPFYHDETDTCEM-KKVQIPIVGVIVIEGVFLQRKEWRDFFHYMVYLDCPRETRFLRESEET----Q----KNLS 165 (193)
T ss_pred CCeEEEeeeccccccccc-cceecCCCCEEEEEehhhhhhhHHhhceEEEEEECCHHHHHHHHhccc----H----hHHH
Confidence 889999999999876543 334567789999999998778899999999999999999887776644 2 3445
Q ss_pred HHHHhhhhHHHHhhcC--CCCceeEEE
Q 010501 213 QISETVYPMYKAFIEP--DLQTAHIKI 237 (509)
Q Consensus 213 ~y~~~V~P~~~~fIeP--~k~~ADIII 237 (509)
+|..+..|.+..|+.. .+..||+|+
T Consensus 166 ~~~~r~~~a~~~y~~~~~~~~~ad~i~ 192 (193)
T PRK07667 166 KFKNRYWKAEDYYLETESPKDRADLVI 192 (193)
T ss_pred HHHHHhHHHHHHHHhhcChHhhCcEEe
Confidence 6666667888888662 388899997
No 31
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.75 E-value=4.9e-19 Score=184.69 Aligned_cols=138 Identities=19% Similarity=0.147 Sum_probs=117.1
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq 113 (509)
.+++++.++.+.++++++|.+++|+ +++|.||||||||||+++|+++. |+.|.|.+||.... .+.++++||
T Consensus 7 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q 83 (353)
T TIGR03265 7 IDNIRKRFGAFTALKDISLSVKKGE---FVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQ 83 (353)
T ss_pred EEEEEEEeCCeEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 4678888888889999999999999 99999999999999999999998 78999999997432 356899999
Q ss_pred CCCCCchhhHHHHHHhhccCcc----------------ee-ccccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 114 DPRLTDYDTLLENIRGLKEGKA----------------VQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~g~~----------------i~-~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
++.+|+..++.+|+.+...... +. .+..+...++.|+|+.+++..++.++.++.++|.|||..
T Consensus 84 ~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s 163 (353)
T TIGR03265 84 SYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLS 163 (353)
T ss_pred CcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9999999999999986322100 01 123455667889999999999999999999999999999
Q ss_pred CCCe
Q 010501 177 LIDL 180 (509)
Q Consensus 177 lLDl 180 (509)
.+|.
T Consensus 164 ~LD~ 167 (353)
T TIGR03265 164 ALDA 167 (353)
T ss_pred cCCH
Confidence 9997
No 32
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.75 E-value=2.2e-18 Score=174.74 Aligned_cols=237 Identities=19% Similarity=0.221 Sum_probs=165.5
Q ss_pred EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------cccccccCCCCCCC
Q 010501 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDPRLT 118 (509)
Q Consensus 50 ~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----------~r~i~~~fq~p~~~ 118 (509)
..++++|||.+++|+ ++||+|.||||||||+|++..+- |+.|.|.+||.+.. ++.++++|||++++
T Consensus 19 ~~al~~vsL~I~~Ge---I~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLL 95 (339)
T COG1135 19 VTALDDVSLEIPKGE---IFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95 (339)
T ss_pred eeeeccceEEEcCCc---EEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEecccccc
Confidence 679999999999999 99999999999999999998887 99999999996432 25689999999999
Q ss_pred chhhHHHHHHhhcc--Cc---c-----------eecc-ccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeE
Q 010501 119 DYDTLLENIRGLKE--GK---A-----------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (509)
Q Consensus 119 d~~tl~e~L~~L~~--g~---~-----------i~~P-~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlk 181 (509)
.-.++.+|+.+-.+ +. . +..+ .-+..+.+.|||++|+|+++++|..++.++|.||.++.||+.
T Consensus 96 ssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~ 175 (339)
T COG1135 96 SSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPE 175 (339)
T ss_pred ccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChH
Confidence 99999999987432 11 0 1111 223445688999999999999999999999999999999984
Q ss_pred EEeecCchHHHHHHHHHHHH-HcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEcCCCCCCcCCCCcceeeccCCcc
Q 010501 182 VSVTGGVHFDLVKRVFRDIQ-RVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPV 260 (509)
Q Consensus 182 IfVd~d~dirLiRRI~RD~~-erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~~~p~~g~~~~~~i~ks~~~~ 260 (509)
-+.-+-.+.+++. +.|.|+--+.|+. +-.-.+.+.
T Consensus 176 -------TT~sIL~LL~~In~~lglTIvlITHEm---------------------------~Vvk~ic~r---------- 211 (339)
T COG1135 176 -------TTQSILELLKDINRELGLTIVLITHEM---------------------------EVVKRICDR---------- 211 (339)
T ss_pred -------HHHHHHHHHHHHHHHcCCEEEEEechH---------------------------HHHHHHhhh----------
Confidence 2333444444443 4566543222221 111111111
Q ss_pred cHHHHHHHhcccccccccceeeEEEeCCCCCcc-------------ccccceeeeccCceEEEEeeecccCCCeEecccc
Q 010501 261 TVDEIKAVMSKEHTETTEETYDIYLLPPGEDPD-------------ACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRI 327 (509)
Q Consensus 261 ~~~~i~~~l~~~~~~~~~~~~diyl~pp~~~~~-------------~~~~~ir~r~~~~~~~l~~~~~i~~~~f~~~P~~ 327 (509)
.++|++|.+...+...|+|..|...--. .+..-++ -...-.+.|.|..+..+.|.+-.=--
T Consensus 212 -----Vavm~~G~lvE~G~v~~vF~~Pk~~~t~~fi~~~~~~~~~~~~~~~l~-~~~~~~~rl~f~g~~~~~plis~~~~ 285 (339)
T COG1135 212 -----VAVLDQGRLVEEGTVSEVFANPKHAITQEFIGETLEIDLPEELLERLE-SGDGPLLRLTFTGESADQPLLSEVAR 285 (339)
T ss_pred -----heEeeCCEEEEeccHHHhhcCcchHHHHHHHHhhccccCcHHHHhhhc-cCCceEEEEEecCccccchHHHHHHH
Confidence 1457777777777778888888543211 1111111 22345688888888888887755555
Q ss_pred ceeeceeecccc
Q 010501 328 TFEVSVRLLGGL 339 (509)
Q Consensus 328 ~f~v~~~~~~gl 339 (509)
.|.|.+.++.|=
T Consensus 286 ~~~v~~nIl~G~ 297 (339)
T COG1135 286 RFGVDVNILSGN 297 (339)
T ss_pred HhCCceEEEecc
Confidence 677777776653
No 33
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.74 E-value=1.3e-18 Score=170.97 Aligned_cols=154 Identities=19% Similarity=0.260 Sum_probs=120.7
Q ss_pred EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----------cccccccCCCCCC
Q 010501 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDDPRL 117 (509)
Q Consensus 50 ~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----------~r~i~~~fq~p~~ 117 (509)
..+|++++|.+++|+ +++|.||||||||||+++|.++. |+.|.+.+++.+.. ++.++++||+.++
T Consensus 18 ~~~L~~v~l~i~~Ge---~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nL 94 (226)
T COG1136 18 VEALKDVNLEIEAGE---FVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNL 94 (226)
T ss_pred eEecccceEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCC
Confidence 579999999999999 99999999999999999999998 89999999986332 2458999999999
Q ss_pred CchhhHHHHHHhh--ccCcc--------------eec--cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCC
Q 010501 118 TDYDTLLENIRGL--KEGKA--------------VQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (509)
Q Consensus 118 ~d~~tl~e~L~~L--~~g~~--------------i~~--P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLD 179 (509)
++..++.||+... ..+.. +.. ...++..++.|||++|+++.+++++-++.++|.|||+..+|
T Consensus 95 l~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD 174 (226)
T COG1136 95 LPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLD 174 (226)
T ss_pred CCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCC
Confidence 9999999998741 11111 011 12225567899999999999999999999999999999999
Q ss_pred eEEEeecCchHHHHHHHHHHHH-HcCCCHHHHHHH
Q 010501 180 LRVSVTGGVHFDLVKRVFRDIQ-RVGQEPEEIIHQ 213 (509)
Q Consensus 180 lkIfVd~d~dirLiRRI~RD~~-erG~t~e~Vi~~ 213 (509)
.+ ....+-.+.+.+. +.|.++.-|.|.
T Consensus 175 ~~-------t~~~V~~ll~~~~~~~g~tii~VTHd 202 (226)
T COG1136 175 SK-------TAKEVLELLRELNKERGKTIIMVTHD 202 (226)
T ss_pred hH-------HHHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 83 3344555555554 446665554443
No 34
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.74 E-value=5.4e-18 Score=167.96 Aligned_cols=155 Identities=15% Similarity=0.155 Sum_probs=123.9
Q ss_pred eeeeeEEEeCcE-EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------cccc
Q 010501 39 IEDTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRII 108 (509)
Q Consensus 39 i~~~lsf~~g~~-~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i 108 (509)
..++++|.++.. .+++++++.+++|+ .++|+|+||||||||++.|++++ |..|.|.+++.... ++.+
T Consensus 5 ~~~~l~~~y~~~~~~l~~v~~~i~~Ge---~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 5 EAENLSFRYPGRKAALKDVSLEIEKGE---RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred EEEEEEEEcCCCceeeeeeEEEECCCC---EEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 357788888665 89999999999999 99999999999999999999999 78899999997533 3568
Q ss_pred cccCCCCCC-CchhhHHHHHHhhccCccee-----------------ccccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 109 DGNFDDPRL-TDYDTLLENIRGLKEGKAVQ-----------------VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 109 ~~~fq~p~~-~d~~tl~e~L~~L~~g~~i~-----------------~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
+++||+|+. +-..++.+.+.+......+. ....++..+..|+|++++++.+.+|++++.+++
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~ili 161 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILL 161 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEE
Confidence 999999954 44567777777644321110 112477788999999999999999999999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHHHc
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV 203 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er 203 (509)
+|||+.++|. ...+.+.++.+++.+.
T Consensus 162 LDEPta~LD~-------~~~~~l~~~l~~L~~~ 187 (235)
T COG1122 162 LDEPTAGLDP-------KGRRELLELLKKLKEE 187 (235)
T ss_pred EcCCCCCCCH-------HHHHHHHHHHHHHHhc
Confidence 9999999998 3555666666666544
No 35
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.74 E-value=2.5e-18 Score=169.29 Aligned_cols=138 Identities=18% Similarity=0.220 Sum_probs=120.8
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc----------ccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS----------RII 108 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~----------r~i 108 (509)
.+++++.+|.+.++++|+|.+++|+ +.+|+||||||||||++.|.+++ |..|.|.++|.+... +++
T Consensus 11 vr~v~~~fG~~~Ild~v~l~V~~Ge---i~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~ 87 (263)
T COG1127 11 VRGVTKSFGDRVILDGVDLDVPRGE---ILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRM 87 (263)
T ss_pred EeeeeeecCCEEEecCceeeecCCc---EEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhhe
Confidence 5789999999999999999999999 99999999999999999999999 899999999986432 457
Q ss_pred cccCCCCCCCchhhHHHHHHh-hccCcc----------------ee-ccc-cccCCCCcCCCeeeeecCccEEEEeccee
Q 010501 109 DGNFDDPRLTDYDTLLENIRG-LKEGKA----------------VQ-VPI-YDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~-L~~g~~----------------i~-~P~-yD~~~~~rsgg~~~~v~~a~VLIVEGi~a 169 (509)
++.||+-.+|+.+++.||+.+ +++... +- .+. .+.-+.+.|||+..+++.+++|.+++.++
T Consensus 88 GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell 167 (263)
T COG1127 88 GVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELL 167 (263)
T ss_pred eEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEE
Confidence 999999999999999999987 333211 11 133 66667889999999999999999999999
Q ss_pred eeccccCCCCe
Q 010501 170 LSEKLRPLIDL 180 (509)
Q Consensus 170 L~dElr~lLDl 180 (509)
++|||+..+|.
T Consensus 168 ~~DEPtsGLDP 178 (263)
T COG1127 168 FLDEPTSGLDP 178 (263)
T ss_pred EecCCCCCCCc
Confidence 99999999998
No 36
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.73 E-value=1.1e-18 Score=183.54 Aligned_cols=138 Identities=22% Similarity=0.198 Sum_probs=116.8
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq 113 (509)
.+++++.++...++++++|.+.+|+ +++|+||||||||||+++|+++. |..|.|.++|.... .+.++++||
T Consensus 17 l~~l~~~~~~~~~l~~vsl~i~~Ge---~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~vfQ 93 (375)
T PRK09452 17 LRGISKSFDGKEVISNLDLTINNGE---FLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTVFQ 93 (375)
T ss_pred EEEEEEEECCeEEEeeeEEEEeCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEec
Confidence 4678888888889999999999999 99999999999999999999998 78999999997532 356899999
Q ss_pred CCCCCchhhHHHHHHhhcc--Cc-------c-------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 114 DPRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~--g~-------~-------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
++.+|+.+++.+|+.+... +. . +.. +..+...++.|+|+.+++..+++|+.++.++|.|||..
T Consensus 94 ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s 173 (375)
T PRK09452 94 SYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLS 173 (375)
T ss_pred CcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 9999999999999975321 10 0 011 23455567789999999999999999999999999999
Q ss_pred CCCe
Q 010501 177 LIDL 180 (509)
Q Consensus 177 lLDl 180 (509)
.+|.
T Consensus 174 ~LD~ 177 (375)
T PRK09452 174 ALDY 177 (375)
T ss_pred cCCH
Confidence 9997
No 37
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.73 E-value=9.6e-19 Score=182.69 Aligned_cols=138 Identities=20% Similarity=0.178 Sum_probs=116.1
Q ss_pred eeeeEEEe-CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccC
Q 010501 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNF 112 (509)
Q Consensus 40 ~~~lsf~~-g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~f 112 (509)
.+++++.+ +...+|++++|.+++|+ +++|+||||||||||+++|+++. |..|.|.+++.... .+.++++|
T Consensus 6 i~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 6 LQAVRKSYDGKTQVIKGIDLDVADGE---FIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEeEEEEeCCCCEEEeeeeEEEcCCC---EEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 46777777 67789999999999999 99999999999999999999998 78999999997432 35689999
Q ss_pred CCCCCCchhhHHHHHHhhcc-Cc----c-----------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeecccc
Q 010501 113 DDPRLTDYDTLLENIRGLKE-GK----A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (509)
Q Consensus 113 q~p~~~d~~tl~e~L~~L~~-g~----~-----------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr 175 (509)
|++.+|+.+++.+|+..... .+ . +.. ...+...++.|+|+.+++..+++++.++.++|+|||.
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~ 162 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPL 162 (356)
T ss_pred CCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99999999999999976322 10 0 011 2345556788999999999999999999999999999
Q ss_pred CCCCe
Q 010501 176 PLIDL 180 (509)
Q Consensus 176 ~lLDl 180 (509)
..+|.
T Consensus 163 s~LD~ 167 (356)
T PRK11650 163 SNLDA 167 (356)
T ss_pred ccCCH
Confidence 99997
No 38
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.73 E-value=5.3e-18 Score=164.63 Aligned_cols=199 Identities=16% Similarity=0.155 Sum_probs=145.5
Q ss_pred eeeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC---C---CeeEEEECCccCc--------
Q 010501 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS-------- 104 (509)
Q Consensus 39 i~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll---p---~~g~I~~D~y~~~-------- 104 (509)
-..++++.||.+.+|++|++.++++. |.+++||||||||||++++..+. | ..|.|.++|.+..
T Consensus 9 ~~~~l~~yYg~~~aL~~i~l~i~~~~---VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~ 85 (253)
T COG1117 9 EVRDLNLYYGDKHALKDINLDIPKNK---VTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVE 85 (253)
T ss_pred EecceeEEECchhhhccCceeccCCc---eEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHH
Confidence 35689999999999999999999999 99999999999999999998875 3 3699999997432
Q ss_pred -cccccccCCCCCCCchhhHHHHHHhhcc-Ccc--------eec------------cccccCCCCcCCCeeeeecCccEE
Q 010501 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKE-GKA--------VQV------------PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 -~r~i~~~fq~p~~~d~~tl~e~L~~L~~-g~~--------i~~------------P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
++.++++||.|+.|+ +++++|+....+ .+. ++. ...+.+...+|||++|++..+++|
T Consensus 86 lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARal 164 (253)
T COG1117 86 LRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARAL 164 (253)
T ss_pred HHHHheeeccCCCCCC-chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHH
Confidence 256899999999998 899999876321 110 111 123344456899999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEcCCCC
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~~~ 242 (509)
.+++..+|.|||.+.||+ .....+ |+.+.... +++.-||+.+++-
T Consensus 165 Av~PeVlLmDEPtSALDP-------IsT~kI--------------EeLi~eLk--------------~~yTIviVTHnmq 209 (253)
T COG1117 165 AVKPEVLLMDEPTSALDP-------ISTLKI--------------EELITELK--------------KKYTIVIVTHNMQ 209 (253)
T ss_pred hcCCcEEEecCcccccCc-------hhHHHH--------------HHHHHHHH--------------hccEEEEEeCCHH
Confidence 999999999999999998 223222 23333221 2334455544331
Q ss_pred CCcCCCCcceeeccCCcccHHHHHHHhcccccccccceeeEEEeCCCCC
Q 010501 243 PFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGED 291 (509)
Q Consensus 243 p~~g~~~~~~i~ks~~~~~~~~i~~~l~~~~~~~~~~~~diyl~pp~~~ 291 (509)
- +.-+.+-.+++-.|.+...+.+-.||..|....
T Consensus 210 Q---------------AaRvSD~taFf~~G~LvE~g~T~~iF~~P~~~~ 243 (253)
T COG1117 210 Q---------------AARVSDYTAFFYLGELVEFGPTDKIFTNPKHKR 243 (253)
T ss_pred H---------------HHHHhHhhhhhcccEEEEEcCHHhhhcCccHHH
Confidence 1 112345557777787777778888999986543
No 39
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.72 E-value=1.5e-17 Score=165.91 Aligned_cols=165 Identities=17% Similarity=0.171 Sum_probs=127.8
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----cccccccCCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDD 114 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----~r~i~~~fq~ 114 (509)
.++++|.|+..++|++|+|.+++|+ +++|+||||||||||+++|.+++ |..|.|.+.+.... ...++|++|.
T Consensus 7 v~nl~v~y~~~~vl~~i~l~v~~G~---~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~ 83 (254)
T COG1121 7 VENLTVSYGNRPVLEDISLSVEKGE---ITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQK 83 (254)
T ss_pred EeeeEEEECCEeeeeccEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcc
Confidence 5789999986689999999999999 99999999999999999999988 89999999987432 2468999996
Q ss_pred C--CCCchhhHHHHHHhhccCcc--------------------eec-cccccCCCCcCCCeeeeecCccEEEEecceeee
Q 010501 115 P--RLTDYDTLLENIRGLKEGKA--------------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (509)
Q Consensus 115 p--~~~d~~tl~e~L~~L~~g~~--------------------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~ 171 (509)
. +.-...++.+.+...+-.+. +.+ -.-++..+++|||+.|++-.|++|+-++.++++
T Consensus 84 ~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllL 163 (254)
T COG1121 84 SSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLL 163 (254)
T ss_pred cccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEe
Confidence 4 33344577777765321111 111 123455678999999999999999999999999
Q ss_pred ccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHH
Q 010501 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (509)
Q Consensus 172 dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y 214 (509)
|||...+|.+ ....+-+++.++++.|.++.-|.|..
T Consensus 164 DEP~~gvD~~-------~~~~i~~lL~~l~~eg~tIl~vtHDL 199 (254)
T COG1121 164 DEPFTGVDVA-------GQKEIYDLLKELRQEGKTVLMVTHDL 199 (254)
T ss_pred cCCcccCCHH-------HHHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 9999999983 45566667777776677655554443
No 40
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.72 E-value=1.8e-18 Score=181.09 Aligned_cols=153 Identities=17% Similarity=0.142 Sum_probs=122.9
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCe--eEEEECCccCc-----ccccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI--AVITMDNYNDS-----SRIIDGN 111 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~--g~I~~D~y~~~-----~r~i~~~ 111 (509)
.+++++.++...++++++|.+.+|+ +++|+||||||||||+++|+++. |+. |.|.+++.... .+.++++
T Consensus 8 ~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~v 84 (362)
T TIGR03258 8 IDHLRVAYGANTVLDDLSLEIEAGE---LLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALL 84 (362)
T ss_pred EEEEEEEECCeEEEeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEE
Confidence 4577777787889999999999999 99999999999999999999998 788 99999987532 2568999
Q ss_pred CCCCCCCchhhHHHHHHhhcc-Cc---------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccc
Q 010501 112 FDDPRLTDYDTLLENIRGLKE-GK---------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (509)
Q Consensus 112 fq~p~~~d~~tl~e~L~~L~~-g~---------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dEl 174 (509)
||++.+++.+++.+|+.+... .+ .+.. ...+...++.|+|+.+++..+++++.++.++|.|||
T Consensus 85 fQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP 164 (362)
T TIGR03258 85 FQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEP 164 (362)
T ss_pred ECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCc
Confidence 999999999999999975321 10 0111 234556678899999999999999999999999999
Q ss_pred cCCCCeEEEeecCchHHHHHHHHHHHHH
Q 010501 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQR 202 (509)
Q Consensus 175 r~lLDlkIfVd~d~dirLiRRI~RD~~e 202 (509)
...+|.. ....++...+++.+
T Consensus 165 ~s~LD~~-------~r~~l~~~l~~l~~ 185 (362)
T TIGR03258 165 LSALDAN-------IRANMREEIAALHE 185 (362)
T ss_pred cccCCHH-------HHHHHHHHHHHHHH
Confidence 9999983 33444555555444
No 41
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.72 E-value=3.5e-18 Score=178.26 Aligned_cols=158 Identities=19% Similarity=0.168 Sum_probs=124.3
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq 113 (509)
.+++++.++...+++++||.+.+|+ +++|+||||||||||+++|++++ |+.|.|.+||.... .+.++++||
T Consensus 5 i~~l~~~~~~~~~l~~isl~i~~Ge---~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 5 IANIKKSFGRTQVLNDISLDIPSGQ---MVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEeCCeEEEEEeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 3677777777889999999999999 99999999999999999999998 78999999997532 246899999
Q ss_pred CCCCCchhhHHHHHHhhcc------Cc--------------ceecc-ccccCCCCcCCCeeeeecCccEEEEecceeeec
Q 010501 114 DPRLTDYDTLLENIRGLKE------GK--------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~------g~--------------~i~~P-~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d 172 (509)
++..++..++.+|+..... +. .+..+ ..+...++.|+|+.+++..+++++.++.++|.|
T Consensus 82 ~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLD 161 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLD 161 (353)
T ss_pred CcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999999999999975321 10 01111 234455678999999999999999999999999
Q ss_pred cccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCH
Q 010501 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEP 207 (509)
Q Consensus 173 Elr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~ 207 (509)
||...+|.. ....++++.+.+.++ |.+.
T Consensus 162 EP~s~LD~~-------~r~~l~~~L~~l~~~~g~ti 190 (353)
T PRK10851 162 EPFGALDAQ-------VRKELRRWLRQLHEELKFTS 190 (353)
T ss_pred CCCccCCHH-------HHHHHHHHHHHHHHhcCCEE
Confidence 999999983 334444555554433 5443
No 42
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.71 E-value=2.8e-18 Score=180.50 Aligned_cols=138 Identities=20% Similarity=0.155 Sum_probs=115.9
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq 113 (509)
.+++++.++...++++++|.+++|+ +++|.||||||||||+++|+++. |..|.|.++|.... .+.++++||
T Consensus 22 l~~v~~~~~~~~~l~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~vfQ 98 (377)
T PRK11607 22 IRNLTKSFDGQHAVDDVSLTIYKGE---IFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMMFQ 98 (377)
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 3567777777789999999999999 99999999999999999999998 78999999997532 356899999
Q ss_pred CCCCCchhhHHHHHHhhcc-Cc--------c-------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 114 DPRLTDYDTLLENIRGLKE-GK--------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~-g~--------~-------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
++.+|++.++.+|+..... .+ . +.. +..+...+..|+|+.+++..+++++.++.++|+|||..
T Consensus 99 ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s 178 (377)
T PRK11607 99 SYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMG 178 (377)
T ss_pred CCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999999999999975321 10 0 011 23355567889999999999999999999999999999
Q ss_pred CCCe
Q 010501 177 LIDL 180 (509)
Q Consensus 177 lLDl 180 (509)
.+|.
T Consensus 179 ~LD~ 182 (377)
T PRK11607 179 ALDK 182 (377)
T ss_pred cCCH
Confidence 9997
No 43
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.70 E-value=1.8e-17 Score=169.54 Aligned_cols=158 Identities=17% Similarity=0.134 Sum_probs=128.3
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc------cccccccC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~------~r~i~~~f 112 (509)
.+++++.++...+|++|||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|.... .+.+++++
T Consensus 10 i~~l~k~~~~~~~l~~vsl~i~~Ge---i~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~v~ 86 (306)
T PRK13537 10 FRNVEKRYGDKLVVDGLSFHVQRGE---CFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGVVP 86 (306)
T ss_pred EEeEEEEECCeEEEecceEEEeCCc---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEEEe
Confidence 4678888888889999999999999 99999999999999999999998 78999999998543 24589999
Q ss_pred CCCCCCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeecccc
Q 010501 113 DDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (509)
Q Consensus 113 q~p~~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr 175 (509)
|++..++..++.+++..... +. .+.. +..+...+..|+|+.+++..+++++.++.++++|||.
T Consensus 87 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt 166 (306)
T PRK13537 87 QFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPT 166 (306)
T ss_pred ccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 99998888999999875332 10 0111 1234445678899999999999999999999999999
Q ss_pred CCCCeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 176 ~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
..+|. ...+.++.+.+++++.|.++
T Consensus 167 ~gLD~-------~~~~~l~~~l~~l~~~g~ti 191 (306)
T PRK13537 167 TGLDP-------QARHLMWERLRSLLARGKTI 191 (306)
T ss_pred cCCCH-------HHHHHHHHHHHHHHhCCCEE
Confidence 99998 45666777777776666554
No 44
>PRK06547 hypothetical protein; Provisional
Probab=99.70 E-value=1.3e-16 Score=150.88 Aligned_cols=153 Identities=19% Similarity=0.196 Sum_probs=116.7
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCccccccccCCCCCCCchhhHHHHHHhhccCcceeccccc
Q 010501 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD 142 (509)
Q Consensus 63 Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD 142 (509)
+.++.+|+|.|++|||||||++.|++.+ ....+++|+|+...... ..+...+.+.+.. .|++..+| ||
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~-~~~~~~~d~~~~~~~~~--------~~~~~~l~~~~l~--~g~~~~~~-yd 79 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART-GFQLVHLDDLYPGWHGL--------AAASEHVAEAVLD--EGRPGRWR-WD 79 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh-CCCeecccceecccccC--------ChHHHHHHHHHHh--CCCCceec-CC
Confidence 4567899999999999999999999987 56688999887432211 1123344455444 56777777 99
Q ss_pred cCCCCcCCCeeeeecCccEEEEecceeeeccccCCCC-----eEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 010501 143 FKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID-----LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISET 217 (509)
Q Consensus 143 ~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLD-----lkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~ 217 (509)
+..+.+.. ...+.+.+++|+||.+++++++++.+| ++|||++|.++|+.|++.||.. . ..|.+.
T Consensus 80 ~~~~~~~~--~~~l~~~~vVIvEG~~al~~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~-----~----~~~~~~ 148 (172)
T PRK06547 80 WANNRPGD--WVSVEPGRRLIIEGVGSLTAANVALASLLGEVLTVWLDGPEALRKERALARDPD-----Y----APHWEM 148 (172)
T ss_pred CCCCCCCC--cEEeCCCCeEEEEehhhccHHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch-----h----hHHHHH
Confidence 98776543 345677889999999999999999999 9999999999999999999832 2 223345
Q ss_pred hhhHHHHhhc--CCCCceeEEEc
Q 010501 218 VYPMYKAFIE--PDLQTAHIKII 238 (509)
Q Consensus 218 V~P~~~~fIe--P~k~~ADIII~ 238 (509)
..|.++.|.. +++.+||+++.
T Consensus 149 w~~~e~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 149 WAAQEERHFARYDPRDVADWLGS 171 (172)
T ss_pred HHHHHHHHHhcCCChhccEEEec
Confidence 5688888875 67899999974
No 45
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.70 E-value=4.9e-17 Score=159.85 Aligned_cols=164 Identities=21% Similarity=0.238 Sum_probs=128.8
Q ss_pred eeeeEEEe-CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------ccc
Q 010501 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRI 107 (509)
Q Consensus 40 ~~~lsf~~-g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----------~r~ 107 (509)
.++++..| +.+.+|++|+|.+++|+ +|+|+|+||||||||+++|.++. |+.|.|.+++.... ++.
T Consensus 6 ~~nl~k~yp~~~~aL~~Vnl~I~~GE---~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 6 VKNLSKTYPGGHQALKDVNLEINQGE---MVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred EeeeeeecCCCceeeeeEeEEeCCCc---EEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 45677666 88999999999999999 99999999999999999999988 79999999997432 246
Q ss_pred ccccCCCCCCCchhhHHHHHHhhccCcc------------------------eeccccc-cCCCCcCCCeeeeecCccEE
Q 010501 108 IDGNFDDPRLTDYDTLLENIRGLKEGKA------------------------VQVPIYD-FKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 108 i~~~fq~p~~~d~~tl~e~L~~L~~g~~------------------------i~~P~yD-~~~~~rsgg~~~~v~~a~VL 162 (509)
++++||++++.+..++.+|+...+-+.. +.+-.+- ...+++|||+.++++++++|
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL 162 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARAL 162 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHH
Confidence 8999999999999999999875443311 1111111 12467899999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHH-HcCCCHHHHHHH
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ-RVGQEPEEIIHQ 213 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~-erG~t~e~Vi~~ 213 (509)
+-++.++|.|||.+.||.. ..+.+-.+.+++. +.|.|+.-.+|+
T Consensus 163 ~Q~pkiILADEPvasLDp~-------~a~~Vm~~l~~in~~~g~Tvi~nLH~ 207 (258)
T COG3638 163 VQQPKIILADEPVASLDPE-------SAKKVMDILKDINQEDGITVIVNLHQ 207 (258)
T ss_pred hcCCCEEecCCcccccChh-------hHHHHHHHHHHHHHHcCCEEEEEech
Confidence 9999999999999999983 3445555555554 578886544443
No 46
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.69 E-value=1.9e-16 Score=158.75 Aligned_cols=162 Identities=21% Similarity=0.344 Sum_probs=131.8
Q ss_pred ecCCccEEEEEECCCCCcHHHHHHHHHhhC------CCeeEEEECCccCcccc-----ccccCCCCCCCchhhHHHHHHh
Q 010501 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDSSRI-----IDGNFDDPRLTDYDTLLENIRG 129 (509)
Q Consensus 61 ~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll------p~~g~I~~D~y~~~~r~-----i~~~fq~p~~~d~~tl~e~L~~ 129 (509)
.+++.|+||||+|+.|+||||+++.|..++ |.+..|.||||+..... +.---..|.+||...+.+.+..
T Consensus 77 ~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~L~~~glm~rKGfPeSyD~~~ll~fl~~ 156 (283)
T COG1072 77 NNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMARKGFPESYDVAALLRFLSD 156 (283)
T ss_pred CCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhHhhhccccccCCCCccccHHHHHHHHHH
Confidence 456779999999999999999999999887 34789999999765422 2222346889999999999999
Q ss_pred hccCcc-eeccccccCCCCcCCCeeeeecCccEEEEecceeeec-----cccCCCCeEEEeecCchHHHHHHHHHHHHHc
Q 010501 130 LKEGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV 203 (509)
Q Consensus 130 L~~g~~-i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d-----Elr~lLDlkIfVd~d~dirLiRRI~RD~~er 203 (509)
++++.+ +..|.|||..+...+++.+.+...++||+||+++|.+ .+.+++|+.||||++.+. +.+|++.+....
T Consensus 157 vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~-le~wyi~Rfl~~ 235 (283)
T COG1072 157 VKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEEL-LEERYIERFLKF 235 (283)
T ss_pred HhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHH-HHHHHHHHHHhc
Confidence 998776 9999999999999998999999999999999999985 356889999999999765 555555555667
Q ss_pred CCCHHHHHHHHHHhhhhHHH
Q 010501 204 GQEPEEIIHQISETVYPMYK 223 (509)
Q Consensus 204 G~t~e~Vi~~y~~~V~P~~~ 223 (509)
|.+.....+.|..+..|+-+
T Consensus 236 g~~a~~~~~~~~~~~~~~~~ 255 (283)
T COG1072 236 GLTAFEDPASYFHNYAPLSE 255 (283)
T ss_pred ccchhhChhhHhhccCcchH
Confidence 77777767777666656544
No 47
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.69 E-value=1.9e-17 Score=173.57 Aligned_cols=138 Identities=17% Similarity=0.173 Sum_probs=115.0
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq 113 (509)
.+++++.++...+++++||.+++|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+.++++||
T Consensus 6 i~~l~~~~~~~~vl~~vsl~i~~Ge---~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 6 LRNVTKAYGDVVISKDINLDIHEGE---FVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEeCCeEEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 4677888888889999999999999 99999999999999999999998 78999999987432 245899999
Q ss_pred CCCCCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 114 DPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
++..++..++.+++..... +. .+.. ...+......|+|+.+++..+++++.++.++|+|||..
T Consensus 83 ~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts 162 (369)
T PRK11000 83 SYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (369)
T ss_pred CcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 9999999999999875321 10 0111 12344556789999999999999999999999999999
Q ss_pred CCCe
Q 010501 177 LIDL 180 (509)
Q Consensus 177 lLDl 180 (509)
.||.
T Consensus 163 ~LD~ 166 (369)
T PRK11000 163 NLDA 166 (369)
T ss_pred cCCH
Confidence 9997
No 48
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.69 E-value=4.3e-17 Score=157.17 Aligned_cols=158 Identities=22% Similarity=0.216 Sum_probs=121.4
Q ss_pred eeeeEEEeCc----EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------
Q 010501 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (509)
Q Consensus 40 ~~~lsf~~g~----~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---------- 104 (509)
.+++++.++. ..+++++||.+++|+ +++|+||||||||||+++|++++ |..|.|.+++....
T Consensus 3 ~~~l~~~~~~~~~~~~il~~~s~~i~~G~---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (218)
T cd03255 3 LKNLSKTYGGGGEKVQALKGVSLSIEKGE---FVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAF 79 (218)
T ss_pred EeeeEEEecCCCcceeEEeeeEEEEcCCC---EEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHH
Confidence 3567777765 789999999999999 99999999999999999999998 78999999986431
Q ss_pred -cccccccCCCCCCCchhhHHHHHHhhcc--Cc-------c-------eec-cccccCCCCcCCCeeeeecCccEEEEec
Q 010501 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 105 -~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g~-------~-------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEG 166 (509)
.+.+++++|++..++..++.+++..... +. . ... +..+...+..|+|+.+++..+++++.++
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (218)
T cd03255 80 RRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDP 159 (218)
T ss_pred HhhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCC
Confidence 1357889999988888888888765221 10 0 001 1234445678999999999999999999
Q ss_pred ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCH
Q 010501 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (509)
Q Consensus 167 i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~ 207 (509)
.+++.|||.+.+|. ...+.+..+.+++.. .|.++
T Consensus 160 ~lllLDEP~~~LD~-------~~~~~l~~~l~~~~~~~~~ti 194 (218)
T cd03255 160 KIILADEPTGNLDS-------ETGKEVMELLRELNKEAGTTI 194 (218)
T ss_pred CEEEEcCCcccCCH-------HHHHHHHHHHHHHHHhcCCeE
Confidence 99999999999998 344555555555544 35443
No 49
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.69 E-value=5.7e-17 Score=158.46 Aligned_cols=163 Identities=19% Similarity=0.262 Sum_probs=125.4
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------cccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRII 108 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----------~r~i 108 (509)
.+++++.++...+++++||.+.+|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+.+
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 3 LRGLTKSFGGRTVLKGVDLDVRRGE---ILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 3678888887889999999999999 99999999999999999999998 78999999986421 1347
Q ss_pred cccCCCCCCCchhhHHHHHHhhcc---Cc--------------ceecc-ccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKE---GK--------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~---g~--------------~i~~P-~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
++++|++..++..++.+++..... +. ....+ ..+...+..|+|+.+++..+++++.++.+++
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lll 159 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLL 159 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 899999988888899998865311 00 01111 2244456789999999999999999999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCHHHHHH
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIH 212 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e~Vi~ 212 (509)
+|||...+|. .....+.++.+++.+ .|.++.-+.|
T Consensus 160 lDEPt~~LD~-------~~~~~l~~~l~~~~~~~~~tvi~vsH 195 (235)
T cd03261 160 YDEPTAGLDP-------IASGVIDDLIRSLKKELGLTSIMVTH 195 (235)
T ss_pred ecCCcccCCH-------HHHHHHHHHHHHHHHhcCcEEEEEec
Confidence 9999999998 345555666666654 3655433333
No 50
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.69 E-value=3.2e-17 Score=167.06 Aligned_cols=157 Identities=16% Similarity=0.166 Sum_probs=131.3
Q ss_pred eeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc------ccccccC
Q 010501 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------RIIDGNF 112 (509)
Q Consensus 41 ~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~------r~i~~~f 112 (509)
.+++..++ ...+|++|||.+++|+ ++|++||||||||||+++|++++ |+.|.|.++|+.... +.+++++
T Consensus 8 ~~l~k~~~~~~~~l~~vs~~i~~Ge---i~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~~ 84 (293)
T COG1131 8 RNLTKKYGGDKTALDGVSFEVEPGE---IFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYVP 84 (293)
T ss_pred cceEEEeCCCCEEEeceeEEEcCCe---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEEc
Confidence 67888888 6999999999999999 99999999999999999999999 899999999975432 4689999
Q ss_pred CCCCCCchhhHHHHHHhhccCcc----------------eecccc-ccCCCCcCCCeeeeecCccEEEEecceeeecccc
Q 010501 113 DDPRLTDYDTLLENIRGLKEGKA----------------VQVPIY-DFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (509)
Q Consensus 113 q~p~~~d~~tl~e~L~~L~~g~~----------------i~~P~y-D~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr 175 (509)
|+|..++.+++.|++..+..-.. +..+.+ +......|+|+++++..+..|+-++.++++|||+
T Consensus 85 ~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt 164 (293)
T COG1131 85 QEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPT 164 (293)
T ss_pred cCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 99999999999999987553221 111221 2223567889999999999999999999999999
Q ss_pred CCCCeEEEeecCchHHHHHHHHHHHHHcC-CCH
Q 010501 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVG-QEP 207 (509)
Q Consensus 176 ~lLDlkIfVd~d~dirLiRRI~RD~~erG-~t~ 207 (509)
+.||. .....++.+.|+++.+| .++
T Consensus 165 ~GLDp-------~~~~~~~~~l~~l~~~g~~tv 190 (293)
T COG1131 165 SGLDP-------ESRREIWELLRELAKEGGVTI 190 (293)
T ss_pred cCCCH-------HHHHHHHHHHHHHHhCCCcEE
Confidence 99998 56778888999998887 453
No 51
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.68 E-value=5.2e-17 Score=156.61 Aligned_cols=157 Identities=20% Similarity=0.205 Sum_probs=119.6
Q ss_pred eeeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------cc
Q 010501 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SR 106 (509)
Q Consensus 40 ~~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----------~r 106 (509)
.+++++.++. ..+++++||.+++|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+
T Consensus 4 ~~~l~~~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 4 FEQVSKAYPGGHQPALDNLNFHITKGE---MVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred EEEEEEEecCCCeeEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 3567777743 579999999999999 99999999999999999999998 78999999986431 13
Q ss_pred cccccCCCCCCCchhhHHHHHHhhcc--C--------------cceec-cccccCCCCcCCCeeeeecCccEEEEeccee
Q 010501 107 IIDGNFDDPRLTDYDTLLENIRGLKE--G--------------KAVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (509)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~e~L~~L~~--g--------------~~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~a 169 (509)
.+++++|++..++..++.+++..... + ..+.. +..+...+..|+|+.+++..+++++.++.++
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ll 160 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLL 160 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 57899999988888889888864211 0 00111 1234445678999999999999999999999
Q ss_pred eeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 170 L~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
+.|||.+.+|. ...+.+..+.+.+.+.|.+
T Consensus 161 llDEPt~~LD~-------~~~~~l~~~l~~~~~~~~t 190 (216)
T TIGR00960 161 LADEPTGNLDP-------ELSRDIMRLFEEFNRRGTT 190 (216)
T ss_pred EEeCCCCcCCH-------HHHHHHHHHHHHHHHCCCE
Confidence 99999999997 2344444455554444544
No 52
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.68 E-value=1.3e-17 Score=173.62 Aligned_cols=162 Identities=20% Similarity=0.198 Sum_probs=126.6
Q ss_pred eeeEEEeC----cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------c
Q 010501 41 DTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------S 105 (509)
Q Consensus 41 ~~lsf~~g----~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----------~ 105 (509)
+++++.++ ...+|+++||.+++|+ ++||+|+||||||||+++|+++. |+.|.|.++|.... +
T Consensus 5 ~~lsk~y~~~~~~~~~L~~vsl~i~~Ge---i~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 5 SNITKVFHQGTKTIQALNNVSLHVPAGQ---IYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEECCCCcceEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 56676663 2579999999999999 99999999999999999999998 78999999997432 2
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecce
Q 010501 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (509)
Q Consensus 106 r~i~~~fq~p~~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~ 168 (509)
+.++++||++.+++..++.+++..... +. .+.. ...+....+.|+|+.+++..+++++.++.+
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~i 161 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKV 161 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCE
Confidence 358999999999988999999875321 10 0111 123445567899999999999999999999
Q ss_pred eeeccccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCHHHHHH
Q 010501 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIH 212 (509)
Q Consensus 169 aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~e~Vi~ 212 (509)
+|.|||++.+|. .....+..+.+++.+. |.++.-+.|
T Consensus 162 LLlDEPts~LD~-------~t~~~i~~lL~~l~~~~g~tiiliTH 199 (343)
T TIGR02314 162 LLCDEATSALDP-------ATTQSILELLKEINRRLGLTILLITH 199 (343)
T ss_pred EEEeCCcccCCH-------HHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 999999999998 3556666666666543 666544444
No 53
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=7.3e-17 Score=156.18 Aligned_cols=157 Identities=19% Similarity=0.180 Sum_probs=120.8
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc------cccccccC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~------~r~i~~~f 112 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.+++.... .+.+++++
T Consensus 3 ~~~~~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (220)
T cd03265 3 VENLVKKYGDFEAVRGVSFRVRRGE---IFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVF 79 (220)
T ss_pred EEEEEEEECCEEeeeceeEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEec
Confidence 3567777777889999999999999 99999999999999999999998 78999999987432 13578899
Q ss_pred CCCCCCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeecccc
Q 010501 113 DDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (509)
Q Consensus 113 q~p~~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr 175 (509)
|++..++..++.+++..... +. .... +..+...+..|+|+.+++..+++++.++.+++.|||.
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt 159 (220)
T cd03265 80 QDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPT 159 (220)
T ss_pred CCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99988887888888754211 10 0111 1234455678999999999999999999999999999
Q ss_pred CCCCeEEEeecCchHHHHHHHHHHHHHc-CCC
Q 010501 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQE 206 (509)
Q Consensus 176 ~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t 206 (509)
..+|. .....+..+.+++... |.+
T Consensus 160 ~~LD~-------~~~~~l~~~l~~~~~~~~~t 184 (220)
T cd03265 160 IGLDP-------QTRAHVWEYIEKLKEEFGMT 184 (220)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHhcCCE
Confidence 99998 3344455555554443 443
No 54
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.68 E-value=6.5e-17 Score=155.27 Aligned_cols=158 Identities=18% Similarity=0.232 Sum_probs=122.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---cccccccCCCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---SRIIDGNFDDP 115 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---~r~i~~~fq~p 115 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.+++.... .+.+++++|++
T Consensus 3 ~~~l~~~~~~~~~l~~v~~~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~ 79 (210)
T cd03269 3 VENVTKRFGRVTALDDISFSVEKGE---IFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER 79 (210)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC
Confidence 3567777777889999999999999 99999999999999999999998 78999999987532 24578899999
Q ss_pred CCCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCC
Q 010501 116 RLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (509)
Q Consensus 116 ~~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lL 178 (509)
..++..++.+++..... +. .... +..+...+..|+|+.+++..++.++.++.+++.|||.+.+
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~L 159 (210)
T cd03269 80 GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGL 159 (210)
T ss_pred cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 88888888888765321 10 0011 1123344668899999999999999999999999999999
Q ss_pred CeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 179 DLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 179 DlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
|. ...+.+.++.+++..+|.++
T Consensus 160 D~-------~~~~~~~~~l~~~~~~~~ti 181 (210)
T cd03269 160 DP-------VNVELLKDVIRELARAGKTV 181 (210)
T ss_pred CH-------HHHHHHHHHHHHHHHCCCEE
Confidence 97 34555555665555555443
No 55
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=6.7e-17 Score=155.54 Aligned_cols=158 Identities=22% Similarity=0.225 Sum_probs=121.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq 113 (509)
.+++++.++...+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.+++++|
T Consensus 3 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 79 (213)
T cd03259 3 LKGLSKTYGSVRALDDLSLTVEPGE---FLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQ 79 (213)
T ss_pred eeeeEEEeCCeeeecceeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcC
Confidence 3577887777889999999999999 99999999999999999999998 78999999986432 235788999
Q ss_pred CCCCCchhhHHHHHHhhcc--C---c-----------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 114 DPRLTDYDTLLENIRGLKE--G---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~--g---~-----------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
++..++..++.+++..... + . .... ...+......|+|+.+++..+++++.++.+++.|||..
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~ 159 (213)
T cd03259 80 DYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLS 159 (213)
T ss_pred chhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9888877888888764211 0 0 0111 12234446789999999999999999999999999999
Q ss_pred CCCeEEEeecCchHHHHHHHHHHHHH-cCCCH
Q 010501 177 LIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (509)
Q Consensus 177 lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~ 207 (509)
.+|. .....+..+.+++.+ .|.++
T Consensus 160 ~LD~-------~~~~~l~~~l~~~~~~~~~ti 184 (213)
T cd03259 160 ALDA-------KLREELREELKELQRELGITT 184 (213)
T ss_pred cCCH-------HHHHHHHHHHHHHHHHcCCEE
Confidence 9997 344555555555544 35443
No 56
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.67 E-value=7.9e-17 Score=164.18 Aligned_cols=158 Identities=18% Similarity=0.147 Sum_probs=124.0
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc------cccccccC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~------~r~i~~~f 112 (509)
.+++++.++...+|+++||.+++|+ ++||+||||||||||+++|++++ |..|.|.++|.... .+.+++++
T Consensus 7 ~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v~ 83 (303)
T TIGR01288 7 LVGVSKSYGDKVVVNDLSFTIARGE---CFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVVP 83 (303)
T ss_pred EEeEEEEeCCeEEEcceeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEEe
Confidence 4678888888889999999999999 99999999999999999999998 78999999987432 24578999
Q ss_pred CCCCCCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeecccc
Q 010501 113 DDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (509)
Q Consensus 113 q~p~~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr 175 (509)
|++..++..++.+++..... +. .... ...+...+..|+|+.+++..+++++.++.++++|||.
T Consensus 84 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt 163 (303)
T TIGR01288 84 QFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPT 163 (303)
T ss_pred ccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 99988888899998864221 10 0111 1234445678999999999999999999999999999
Q ss_pred CCCCeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 176 ~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
..+|. ...+.+..+.+++...|.++
T Consensus 164 ~gLD~-------~~~~~l~~~l~~~~~~g~ti 188 (303)
T TIGR01288 164 TGLDP-------HARHLIWERLRSLLARGKTI 188 (303)
T ss_pred cCCCH-------HHHHHHHHHHHHHHhCCCEE
Confidence 99998 34455555555555555543
No 57
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.67 E-value=9e-17 Score=166.98 Aligned_cols=157 Identities=18% Similarity=0.153 Sum_probs=126.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc------cccccccC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~------~r~i~~~f 112 (509)
.+++++.++.+.+|+++||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|.... .+.+++++
T Consensus 44 i~nl~k~y~~~~~l~~is~~i~~Ge---i~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig~v~ 120 (340)
T PRK13536 44 LAGVSKSYGDKAVVNGLSFTVASGE---CFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVP 120 (340)
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEEEEe
Confidence 5788998998999999999999999 99999999999999999999998 89999999997532 24588999
Q ss_pred CCCCCCchhhHHHHHHhhcc--Ccc--------------eecc-ccccCCCCcCCCeeeeecCccEEEEecceeeecccc
Q 010501 113 DDPRLTDYDTLLENIRGLKE--GKA--------------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (509)
Q Consensus 113 q~p~~~d~~tl~e~L~~L~~--g~~--------------i~~P-~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr 175 (509)
|++..++..++.+++..+.. +.. ...+ ..+......|+|+.+++..+++++.++.++++|||.
T Consensus 121 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt 200 (340)
T PRK13536 121 QFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPT 200 (340)
T ss_pred CCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence 99988888899999875321 100 1111 234445678899999999999999999999999999
Q ss_pred CCCCeEEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 176 ~lLDlkIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
..||. ...+.++.+++++...|.+
T Consensus 201 ~gLD~-------~~r~~l~~~l~~l~~~g~t 224 (340)
T PRK13536 201 TGLDP-------HARHLIWERLRSLLARGKT 224 (340)
T ss_pred CCCCH-------HHHHHHHHHHHHHHhCCCE
Confidence 99998 4555666666666555554
No 58
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.67 E-value=1.3e-16 Score=149.42 Aligned_cols=137 Identities=20% Similarity=0.266 Sum_probs=114.0
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc------cccccccCC
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFD 113 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~------~r~i~~~fq 113 (509)
+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.+++.... .+.+++++|
T Consensus 4 ~~l~~~~~~~~~l~~~~~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (173)
T cd03230 4 RNLSKRYGKKTALDDISLTVEKGE---IYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPE 80 (173)
T ss_pred EEEEEEECCeeeeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEec
Confidence 566777766679999999999999 99999999999999999999998 78999999987432 235788999
Q ss_pred CCCCCchhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHH
Q 010501 114 DPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLV 193 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLi 193 (509)
++..++..++.+++. .|+|+.+++..+++++.++.+++.|||...+|. ...+.+
T Consensus 81 ~~~~~~~~tv~~~~~-------------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~-------~~~~~l 134 (173)
T cd03230 81 EPSLYENLTVRENLK-------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDP-------ESRREF 134 (173)
T ss_pred CCccccCCcHHHHhh-------------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH-------HHHHHH
Confidence 998888778888874 788899999999999999999999999999997 344555
Q ss_pred HHHHHHHHHcCCC
Q 010501 194 KRVFRDIQRVGQE 206 (509)
Q Consensus 194 RRI~RD~~erG~t 206 (509)
..+.+++.++|.+
T Consensus 135 ~~~l~~~~~~g~t 147 (173)
T cd03230 135 WELLRELKKEGKT 147 (173)
T ss_pred HHHHHHHHHCCCE
Confidence 5555555555544
No 59
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.67 E-value=1.3e-16 Score=155.29 Aligned_cols=158 Identities=21% Similarity=0.241 Sum_probs=123.1
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------cccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~~ 110 (509)
.+++++.++...+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.+++
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 3 AENLSKRYGKRKVVNGVSLSVKQGE---IVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred EEEEEEEeCCEEeeccceeEecCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 3577888887889999999999999 99999999999999999999998 78999999987431 124788
Q ss_pred cCCCCCCCchhhHHHHHHhhcc--Cc-------c-------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeecc
Q 010501 111 NFDDPRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~--g~-------~-------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dE 173 (509)
++|++..++..++.+++..... +. . ... ...+...+..|+|+.+++..+++++.++.+++.||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 159 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDE 159 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 9999988888889888865321 10 0 011 12344456788999999999999999999999999
Q ss_pred ccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 174 lr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
|...+|. ...+.+.++.+++.+.|.++
T Consensus 160 Pt~~LD~-------~~~~~~~~~l~~~~~~~~ti 186 (232)
T cd03218 160 PFAGVDP-------IAVQDIQKIIKILKDRGIGV 186 (232)
T ss_pred CcccCCH-------HHHHHHHHHHHHHHHCCCEE
Confidence 9999998 34555556666665555553
No 60
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.66 E-value=7.4e-17 Score=154.06 Aligned_cols=156 Identities=16% Similarity=0.162 Sum_probs=120.3
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----------cccc
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRII 108 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----------~r~i 108 (509)
+++++.++...+++++||.+.+|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+.+
T Consensus 2 ~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 2 KNISKKFGDKIILDDLNLTIEKGK---MYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred cceEEEECCEEEEeceEEEEeCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 467788877889999999999999 99999999999999999999998 78999999987521 1357
Q ss_pred cccCCCCCCCchhhHHHHHHhhcc--C-------c-------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeee
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKE--G-------K-------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~--g-------~-------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~ 171 (509)
++++|++..++..++.+++..... + . .... ...+......|+|+.+++..+++++.++.+++.
T Consensus 79 ~~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llll 158 (206)
T TIGR03608 79 GYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILA 158 (206)
T ss_pred eEEecchhhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 889999988887888888765211 0 0 0111 122444567889999999999999999999999
Q ss_pred ccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 172 dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
|||...+|. ...+.+..+.+++.+.|.+
T Consensus 159 DEPt~~LD~-------~~~~~l~~~l~~~~~~~~t 186 (206)
T TIGR03608 159 DEPTGSLDP-------KNRDEVLDLLLELNDEGKT 186 (206)
T ss_pred eCCcCCCCH-------HHHHHHHHHHHHHHhcCCE
Confidence 999999997 3445555555555444443
No 61
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.66 E-value=1.5e-16 Score=153.92 Aligned_cols=156 Identities=19% Similarity=0.209 Sum_probs=120.6
Q ss_pred eeeEEEeCc----EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--cccccccCC
Q 010501 41 DTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFD 113 (509)
Q Consensus 41 ~~lsf~~g~----~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--~r~i~~~fq 113 (509)
+++++.++. ..+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.+++++|
T Consensus 4 ~~l~~~~~~~~~~~~il~~vs~~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 4 RNVSKTYGGGGGAVTALEDISLSVEEGE---FVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred EEEEEEcCCCCcceEEEeceeEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 567777766 789999999999999 99999999999999999999998 78999999987542 345789999
Q ss_pred CCCCCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 114 DPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
++..++..++.+++..... +. .... ...+......|+|+.+++..+++++.++.++++|||..
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~ 160 (220)
T cd03293 81 QDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFS 160 (220)
T ss_pred ccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence 9888887888888764221 10 0111 12344456789999999999999999999999999999
Q ss_pred CCCeEEEeecCchHHHHHHHHHHHHH-cCCC
Q 010501 177 LIDLRVSVTGGVHFDLVKRVFRDIQR-VGQE 206 (509)
Q Consensus 177 lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t 206 (509)
.+|. .....+..+.+++.. .|.+
T Consensus 161 ~LD~-------~~~~~~~~~l~~~~~~~~~t 184 (220)
T cd03293 161 ALDA-------LTREQLQEELLDIWRETGKT 184 (220)
T ss_pred CCCH-------HHHHHHHHHHHHHHHHcCCE
Confidence 9998 344555555555432 3544
No 62
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.66 E-value=5.5e-17 Score=155.19 Aligned_cols=157 Identities=23% Similarity=0.208 Sum_probs=123.6
Q ss_pred eeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------ccccc
Q 010501 42 TLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIID 109 (509)
Q Consensus 42 ~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----------~r~i~ 109 (509)
+++..|+ .+.+|++|||.+++|+ ++.|+||||||||||++.|.+.. |+.|.|.+++++.. ++.++
T Consensus 6 ~V~k~Y~~g~~aL~~vs~~i~~Ge---f~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IG 82 (223)
T COG2884 6 NVSKAYPGGREALRDVSFHIPKGE---FVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIG 82 (223)
T ss_pred hhhhhcCCCchhhhCceEeecCce---EEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheee
Confidence 4444443 3669999999999999 99999999999999999999988 99999999999643 35789
Q ss_pred ccCCCCCCCchhhHHHHHHhhcc--Ccc---eec------------cccccCCCCcCCCeeeeecCccEEEEecceeeec
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKE--GKA---VQV------------PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~--g~~---i~~------------P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d 172 (509)
.+||+..+.+..++++|++.... |.+ +.. -.-..-+.+.|+|++|+++++++++-.+.++|.|
T Consensus 83 vVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlAD 162 (223)
T COG2884 83 VVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLAD 162 (223)
T ss_pred eEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeec
Confidence 99999999999999999987432 211 100 1112224578999999999999999999999999
Q ss_pred cccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHH
Q 010501 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (509)
Q Consensus 173 Elr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e 208 (509)
||+..+|. .--..+-++.-++.+.|.|+.
T Consensus 163 EPTGNLDp-------~~s~~im~lfeeinr~GtTVl 191 (223)
T COG2884 163 EPTGNLDP-------DLSWEIMRLFEEINRLGTTVL 191 (223)
T ss_pred CCCCCCCh-------HHHHHHHHHHHHHhhcCcEEE
Confidence 99999997 223345556666777787743
No 63
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.66 E-value=1.6e-16 Score=153.50 Aligned_cols=158 Identities=15% Similarity=0.133 Sum_probs=121.6
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------cccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~~ 110 (509)
.+++++.++...++++++|.+.+|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+.+++
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 3 VENLNAGYGKSQILFGVSLTVPEGE---IVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred EeeEEeecCCeeEeeeeeEEEcCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 3567777777789999999999999 99999999999999999999998 78999999986432 234788
Q ss_pred cCCCCCCCchhhHHHHHHhhccCc--------------ce-ec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccc
Q 010501 111 NFDDPRLTDYDTLLENIRGLKEGK--------------AV-QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~g~--------------~i-~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dEl 174 (509)
++|++..++..++.+++....... .. .. ...+......|+|+.+++..+++++.++.+++.|||
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 159 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEP 159 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 999998888888988886432100 01 01 123444456889999999999999999999999999
Q ss_pred cCCCCeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 175 r~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
...+|. .....+..+.+++.++|.++
T Consensus 160 t~~LD~-------~~~~~l~~~l~~~~~~~~ti 185 (222)
T cd03224 160 SEGLAP-------KIVEEIFEAIRELRDEGVTI 185 (222)
T ss_pred cccCCH-------HHHHHHHHHHHHHHHCCCEE
Confidence 999997 34445555555555455543
No 64
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.66 E-value=1.3e-16 Score=155.72 Aligned_cols=158 Identities=18% Similarity=0.221 Sum_probs=122.2
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------ccccccc
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~~~ 111 (509)
+++++.++...++++++|.+++|+ +++|+||||||||||+++|++++ |..|.|.+++.... ...++++
T Consensus 4 ~~l~~~~~~~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 4 RGLTKRFGGLVALDDVSFSVRPGE---IHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred eeeEEEECCEEEecCceEEecCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 577887777789999999999999 99999999999999999999998 78999999987432 1247889
Q ss_pred CCCCCCCchhhHHHHHHhhcc--Cc-----------------c-------eec-cccccCCCCcCCCeeeeecCccEEEE
Q 010501 112 FDDPRLTDYDTLLENIRGLKE--GK-----------------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVII 164 (509)
Q Consensus 112 fq~p~~~d~~tl~e~L~~L~~--g~-----------------~-------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIV 164 (509)
+|++..++..++.+++..... +. . ... +..+...+..|+|+.+++..+++++.
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~ 160 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALAT 160 (236)
T ss_pred ecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999988888899998764221 00 0 001 12234445688999999999999999
Q ss_pred ecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHH
Q 010501 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (509)
Q Consensus 165 EGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e 208 (509)
++.+++.|||...+|. ...+.+..+.+++...|.++.
T Consensus 161 ~p~llllDEPt~~LD~-------~~~~~l~~~l~~~~~~~~tii 197 (236)
T cd03219 161 DPKLLLLDEPAAGLNP-------EETEELAELIRELRERGITVL 197 (236)
T ss_pred CCCEEEEcCCcccCCH-------HHHHHHHHHHHHHHHCCCEEE
Confidence 9999999999999997 344555556666555555543
No 65
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.66 E-value=1.8e-16 Score=152.05 Aligned_cols=157 Identities=20% Similarity=0.183 Sum_probs=120.6
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq 113 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.+++++|
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (208)
T cd03268 3 TNDLTKTYGKKRVLDDISLHVKKGE---IYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIE 79 (208)
T ss_pred EEEEEEEECCeEeEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecC
Confidence 3577887777889999999999999 99999999999999999999998 78999999987432 235788999
Q ss_pred CCCCCchhhHHHHHHhhcc--Cc---c-------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 114 DPRLTDYDTLLENIRGLKE--GK---A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~--g~---~-------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
++..++..++.+++..... +. . ... ...+...+..|+|+.+++..+++++.++.+++.|||...+|.
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 159 (208)
T cd03268 80 APGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDP 159 (208)
T ss_pred CCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCH
Confidence 9988888899998865321 10 0 001 112333456889999999999999999999999999999998
Q ss_pred EEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 181 RVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 181 kIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
...+.+..+.+.....|.+
T Consensus 160 -------~~~~~l~~~l~~~~~~~~t 178 (208)
T cd03268 160 -------DGIKELRELILSLRDQGIT 178 (208)
T ss_pred -------HHHHHHHHHHHHHHHCCCE
Confidence 3344444555554444443
No 66
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.66 E-value=1.3e-16 Score=152.94 Aligned_cols=157 Identities=13% Similarity=0.157 Sum_probs=119.6
Q ss_pred eeeEEEeCc-EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----cccccccCCC
Q 010501 41 DTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDD 114 (509)
Q Consensus 41 ~~lsf~~g~-~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----~r~i~~~fq~ 114 (509)
+++++.++. ..++++++|.+++|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+.+++++|+
T Consensus 3 ~~l~~~~~~~~~~l~~v~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~ 79 (205)
T cd03226 3 ENISFSYKKGTEILDDLSLDLYAGE---IIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQD 79 (205)
T ss_pred ccEEEEeCCcCceeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecC
Confidence 467777766 789999999999999 99999999999999999999998 78999999987532 2357889998
Q ss_pred CC-CCchhhHHHHHHhhcc--Cc---c-------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 115 PR-LTDYDTLLENIRGLKE--GK---A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 115 p~-~~d~~tl~e~L~~L~~--g~---~-------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
+. .+...++.+++..... +. . ... +..+......|+|+.+++..+++++.++.+++.|||...+|.
T Consensus 80 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 159 (205)
T cd03226 80 VDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDY 159 (205)
T ss_pred hhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCH
Confidence 74 3345688888865321 10 0 111 123444567899999999999999999999999999999998
Q ss_pred EEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 181 RVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 181 kIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
...+.+..+.+++...|.++
T Consensus 160 -------~~~~~l~~~l~~~~~~~~ti 179 (205)
T cd03226 160 -------KNMERVGELIRELAAQGKAV 179 (205)
T ss_pred -------HHHHHHHHHHHHHHHCCCEE
Confidence 34555666666665555553
No 67
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.65 E-value=1.4e-16 Score=153.20 Aligned_cols=158 Identities=21% Similarity=0.225 Sum_probs=121.1
Q ss_pred eeeeEEEe-CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------ccc
Q 010501 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRI 107 (509)
Q Consensus 40 ~~~lsf~~-g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----------~r~ 107 (509)
.+++++.+ +...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.
T Consensus 4 ~~~l~~~~~~~~~il~~is~~i~~G~---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 4 FHNVSKAYPGGVAALHDVSLHIRKGE---FLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred EEeeeEEeCCCceeecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 35677777 45679999999999999 99999999999999999999998 78999999987432 135
Q ss_pred ccccCCCCCCCchhhHHHHHHhhcc--C---c-----------ceec-cccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 108 IDGNFDDPRLTDYDTLLENIRGLKE--G---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 108 i~~~fq~p~~~d~~tl~e~L~~L~~--g---~-----------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
+++++|++..++..++.+++..... + . .... +..+......|+|+.+++..+++++.++.+++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 160 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLL 160 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEE
Confidence 7889999988877888888765211 0 0 0111 12233446788999999999999999999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
.|||...+|. .....+.++.+++.+.|.++
T Consensus 161 LDEPt~~LD~-------~~~~~l~~~l~~~~~~~~ti 190 (214)
T TIGR02673 161 ADEPTGNLDP-------DLSERILDLLKRLNKRGTTV 190 (214)
T ss_pred EeCCcccCCH-------HHHHHHHHHHHHHHHcCCEE
Confidence 9999999998 34555666666655555543
No 68
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=2.5e-16 Score=154.43 Aligned_cols=159 Identities=19% Similarity=0.188 Sum_probs=122.4
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq 113 (509)
.+++++.++...++++++|.+.+|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+.+++++|
T Consensus 5 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 5 VRNVSKRFGDFVALDDVSLDIPSGE---LVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEeEEEEECCEEeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 4678888887889999999999999 99999999999999999999998 78999999986432 235788999
Q ss_pred CCCCCchhhHHHHHHhhcc--Cc-----------c-------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeec
Q 010501 114 DPRLTDYDTLLENIRGLKE--GK-----------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~--g~-----------~-------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d 172 (509)
+|..++..++.+++..... +. . ... +..+......|+|+.+++..+++++.++.+++.|
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllD 161 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLD 161 (239)
T ss_pred CCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9988877888888864211 00 0 001 1123344678899999999999999999999999
Q ss_pred cccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCHH
Q 010501 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPE 208 (509)
Q Consensus 173 Elr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~e 208 (509)
||...+|. ...+.+..+.+++... |.++.
T Consensus 162 EP~~~LD~-------~~~~~l~~~l~~~~~~~~~tvi 191 (239)
T cd03296 162 EPFGALDA-------KVRKELRRWLRRLHDELHVTTV 191 (239)
T ss_pred CCcccCCH-------HHHHHHHHHHHHHHHHcCCEEE
Confidence 99999998 3445555555555443 55543
No 69
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=2e-16 Score=148.85 Aligned_cols=140 Identities=23% Similarity=0.252 Sum_probs=114.6
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---------ccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---------~r~i~ 109 (509)
.+++++.++...++++++|.+++|+ +++|+|+||||||||+++|++.+ |..|.|.+++.... .+.++
T Consensus 3 ~~~l~~~~~~~~~l~~i~~~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 3 LKNVSKRYGQKTVLNDVSLNIEAGE---IVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred EEEEEEEECCeEEEeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 3567777777789999999999999 99999999999999999999998 68999999986431 13467
Q ss_pred ccCCCCCCCchhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCch
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVH 189 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~d 189 (509)
+.+|++..++..++.+++... .|+|+.+++..+++++.++.+++.|||...+|. ..
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~-----------------lS~G~~qr~~la~al~~~p~llilDEP~~~LD~-------~~ 135 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG-----------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDP-------IT 135 (178)
T ss_pred EEecCCccCCCCCHHHheeec-----------------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCH-------HH
Confidence 889998887777888776432 788899999999999999999999999999998 34
Q ss_pred HHHHHHHHHHHHHc-CCC
Q 010501 190 FDLVKRVFRDIQRV-GQE 206 (509)
Q Consensus 190 irLiRRI~RD~~er-G~t 206 (509)
...+..+.+.+... |.+
T Consensus 136 ~~~l~~~l~~~~~~~~~t 153 (178)
T cd03229 136 RREVRALLKSLQAQLGIT 153 (178)
T ss_pred HHHHHHHHHHHHHhcCCE
Confidence 55556666665544 444
No 70
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.65 E-value=8.4e-17 Score=158.80 Aligned_cols=153 Identities=18% Similarity=0.185 Sum_probs=124.1
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc--------ccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~--------r~i~~ 110 (509)
.++++..+|...+++++||.+.+|+ ++||+||||||||||.++|.+.+ |+.|.|.+++..... ..+.-
T Consensus 7 v~~l~k~FGGl~Al~~Vsl~v~~Ge---i~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~R 83 (250)
T COG0411 7 VRGLSKRFGGLTAVNDVSLEVRPGE---IVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIAR 83 (250)
T ss_pred eccceeecCCEEEEeceeEEEcCCe---EEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcccee
Confidence 4678889999999999999999999 99999999999999999999999 899999999985432 23567
Q ss_pred cCCCCCCCchhhHHHHHHhhccCc-----c------------------------eeccccccCCCCcCCCeeeeecCccE
Q 010501 111 NFDDPRLTDYDTLLENIRGLKEGK-----A------------------------VQVPIYDFKSSSRIGYRTLEVPSSRI 161 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~g~-----~------------------------i~~P~yD~~~~~rsgg~~~~v~~a~V 161 (509)
.||.+..|..+++.||+..-.... . ...+..+...+..+.|++.+++.+++
T Consensus 84 TFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~qR~LEIArA 163 (250)
T COG0411 84 TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQQRRLEIARA 163 (250)
T ss_pred ecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhHhHHHHHHHH
Confidence 899999999999999986531100 0 11133455556777888899999999
Q ss_pred EEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH
Q 010501 162 VIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR 202 (509)
Q Consensus 162 LIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e 202 (509)
+..++.++|+|||...+.. .+..-+..++|++.+
T Consensus 164 La~~P~lLLLDEPaAGln~-------~e~~~l~~~i~~i~~ 197 (250)
T COG0411 164 LATQPKLLLLDEPAAGLNP-------EETEELAELIRELRD 197 (250)
T ss_pred HhcCCCEEEecCccCCCCH-------HHHHHHHHHHHHHHh
Confidence 9999999999999999987 355556666666665
No 71
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.65 E-value=2.3e-16 Score=152.42 Aligned_cols=158 Identities=16% Similarity=0.160 Sum_probs=120.0
Q ss_pred eeeeEEEeCc----EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------
Q 010501 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (509)
Q Consensus 40 ~~~lsf~~g~----~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---------- 104 (509)
.+++++.++. ..+++++||.+++|+ +++|+||||||||||+++|++.+ |..|.|.+++....
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~isl~i~~G~---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 4 CENLGKRYQEGKLDTRVLKGVSLSIGKGE---IVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred EEeeeEEccCCCcceEeEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 3567777753 579999999999999 99999999999999999999998 78999999986431
Q ss_pred -cccccccCCCCCCCchhhHHHHHHhhcc--C---cc-----------eec-cccccCCCCcCCCeeeeecCccEEEEec
Q 010501 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKE--G---KA-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 105 -~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g---~~-----------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEG 166 (509)
.+.+++++|++..++..++.+++..... . .. ... +..+...+..|+|+.+++..+++++.++
T Consensus 81 ~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p 160 (221)
T TIGR02211 81 RNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQP 160 (221)
T ss_pred HHhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCC
Confidence 1347899999988887888888864210 0 00 011 1234445678999999999999999999
Q ss_pred ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCH
Q 010501 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (509)
Q Consensus 167 i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~ 207 (509)
.+++.|||...+|. ...+.+..+.+++.. .|.++
T Consensus 161 ~illlDEPt~~LD~-------~~~~~l~~~l~~~~~~~~~ti 195 (221)
T TIGR02211 161 SLVLADEPTGNLDN-------NNAKIIFDLMLELNRELNTSF 195 (221)
T ss_pred CEEEEeCCCCcCCH-------HHHHHHHHHHHHHHHhcCCEE
Confidence 99999999999997 344555555555543 35443
No 72
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.65 E-value=1.6e-16 Score=154.98 Aligned_cols=161 Identities=22% Similarity=0.217 Sum_probs=123.3
Q ss_pred eeeeEEEeCcE----EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------
Q 010501 40 EDTLSFEKGFF----IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~----~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---------- 104 (509)
.+++++.++.. .++++++|.+.+|+ +++|+||||||||||+++|++++ |..|.|.+++....
T Consensus 4 ~~~l~~~~~~~~~~~~il~~~s~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 4 LKNVSKVFGDTGGKVTALKDVSLSVPKGE---IFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred EecceEEccCCCCceeeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 35677777655 89999999999999 99999999999999999999999 78999999987432
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--Cc--------------ceecc-ccccCCCCcCCCeeeeecCccEEEEecc
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g~--------------~i~~P-~yD~~~~~rsgg~~~~v~~a~VLIVEGi 167 (509)
.+.+++++|++..++..++.+++..... +. ....+ ..+......|+|+.+++..++.++.++.
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 160 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPK 160 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 2357889999988888888888864211 10 01111 2234456788999999999999999999
Q ss_pred eeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCHHHH
Q 010501 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEI 210 (509)
Q Consensus 168 ~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~e~V 210 (509)
+++.|||...+|. .....+.++.+++... |.++.-+
T Consensus 161 lllLDEP~~~LD~-------~~~~~l~~~l~~~~~~~~~tvii~ 197 (233)
T cd03258 161 VLLCDEATSALDP-------ETTQSILALLRDINRELGLTIVLI 197 (233)
T ss_pred EEEecCCCCcCCH-------HHHHHHHHHHHHHHHHcCCEEEEE
Confidence 9999999999998 3455666666666543 6554333
No 73
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=2.2e-16 Score=154.25 Aligned_cols=159 Identities=16% Similarity=0.138 Sum_probs=121.3
Q ss_pred eeeeEEEeCc----EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------
Q 010501 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (509)
Q Consensus 40 ~~~lsf~~g~----~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---------- 104 (509)
.+++++.++. ..+++++||.+++|+ +++|+||||||||||+++|++++ |..|.|.+++....
T Consensus 8 ~~~l~~~~~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 8 CDNLCKRYQEGSVQTDVLHNVSFSIGEGE---MMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred EEeEEEEcCCCCcceeeEEeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 4677777753 579999999999999 99999999999999999999998 78999999986431
Q ss_pred -cccccccCCCCCCCchhhHHHHHHhhcc--C---c-----------ceec-cccccCCCCcCCCeeeeecCccEEEEec
Q 010501 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKE--G---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 105 -~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g---~-----------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEG 166 (509)
.+.+++++|++..++..++.+++..... + . .... ...+......|+|+.+++..+++++.++
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p 164 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNP 164 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 1347889999988887889998865210 1 0 0111 1223444678899999999999999999
Q ss_pred ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCHH
Q 010501 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPE 208 (509)
Q Consensus 167 i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e 208 (509)
.+++.|||...+|. .....+..+.+++.. .|.++.
T Consensus 165 ~lllLDEPt~~LD~-------~~~~~l~~~l~~~~~~~g~tvi 200 (233)
T PRK11629 165 RLVLADEPTGNLDA-------RNADSIFQLLGELNRLQGTAFL 200 (233)
T ss_pred CEEEEeCCCCCCCH-------HHHHHHHHHHHHHHHhCCCEEE
Confidence 99999999999997 345555566666543 355443
No 74
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.65 E-value=1.7e-16 Score=152.35 Aligned_cols=156 Identities=17% Similarity=0.202 Sum_probs=117.6
Q ss_pred eeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccccc
Q 010501 41 DTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (509)
Q Consensus 41 ~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~ 110 (509)
+++++.++. ..++++++|.+++|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+.+++
T Consensus 3 ~~l~~~~~~~~~~il~~vs~~i~~G~---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 3 KNLSFSYPDGARPALDDISLTIKKGE---FVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred eeEEEecCCCCeeeecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 567777766 789999999999999 99999999999999999999998 78999999986432 135788
Q ss_pred cCCCCC-CCchhhHHHHHHhhcc--C---c-----------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeec
Q 010501 111 NFDDPR-LTDYDTLLENIRGLKE--G---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (509)
Q Consensus 111 ~fq~p~-~~d~~tl~e~L~~L~~--g---~-----------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d 172 (509)
.+|++. .+...++.+++..... + . .... ...+...+..|+|+.+++..+++++.++.+++.|
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD 159 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLD 159 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 899874 3455678888754211 0 0 0111 1223445678999999999999999999999999
Q ss_pred cccCCCCeEEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 173 Elr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
||.+.+|. .....+..+.+++.+.|.+
T Consensus 160 EPt~~LD~-------~~~~~~~~~l~~~~~~~~t 186 (211)
T cd03225 160 EPTAGLDP-------AGRRELLELLKKLKAEGKT 186 (211)
T ss_pred CCcccCCH-------HHHHHHHHHHHHHHHcCCE
Confidence 99999998 3444555555555544544
No 75
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.65 E-value=2.2e-16 Score=163.95 Aligned_cols=163 Identities=20% Similarity=0.215 Sum_probs=125.8
Q ss_pred eeeeEEEeC----cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------
Q 010501 40 EDTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (509)
Q Consensus 40 ~~~lsf~~g----~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---------- 104 (509)
.+++++.++ ...+++++||.+++|+ ++||+||||||||||+++|++++ |..|.|.+++....
T Consensus 4 i~~l~~~y~~~~~~~~il~~vsl~i~~Ge---i~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 4 LKNISKVFPQGGRTIHALNNVSLHIPAGE---IFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred EEeEEEEeCCCCCceEEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 357777776 4679999999999999 99999999999999999999998 78999999987432
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--Cc--------------ceecc-ccccCCCCcCCCeeeeecCccEEEEecc
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g~--------------~i~~P-~yD~~~~~rsgg~~~~v~~a~VLIVEGi 167 (509)
++.++++||++..++..++.+++..... +. .+..+ ..+......|+|+.+++..+++++.++.
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 160 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPK 160 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 2357899999988888899999865321 10 01111 2344456789999999999999999999
Q ss_pred eeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCHHHHHH
Q 010501 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIH 212 (509)
Q Consensus 168 ~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e~Vi~ 212 (509)
++++|||+..+|. .....+..+.+++.. .|.++.-+.|
T Consensus 161 iLlLDEPts~LD~-------~~~~~l~~~L~~l~~~~g~tiilvtH 199 (343)
T PRK11153 161 VLLCDEATSALDP-------ATTRSILELLKDINRELGLTIVLITH 199 (343)
T ss_pred EEEEeCCcccCCH-------HHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 9999999999998 345566666666654 3665433333
No 76
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.64 E-value=1.6e-16 Score=161.76 Aligned_cols=151 Identities=16% Similarity=0.157 Sum_probs=118.7
Q ss_pred eCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc------cccccccCCCCCCCc
Q 010501 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFDDPRLTD 119 (509)
Q Consensus 47 ~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~------~r~i~~~fq~p~~~d 119 (509)
++...+++++||.+++|+ ++||+||||||||||+++|++++ |..|.|.++|.... .+.+++++|++..++
T Consensus 3 y~~~~~l~~vs~~i~~Ge---~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 3 YGDFKAVDGVNFKVREGE---VFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred eCCeeEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCC
Confidence 356779999999999999 99999999999999999999998 78999999987432 235789999999888
Q ss_pred hhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEE
Q 010501 120 YDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRV 182 (509)
Q Consensus 120 ~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkI 182 (509)
..++.+++..... +. .+.. ...+...+..|+|+.+++..+++++.++.++++|||...+|.
T Consensus 80 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~-- 157 (302)
T TIGR01188 80 DLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDP-- 157 (302)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH--
Confidence 8899999875321 10 0111 123444567899999999999999999999999999999998
Q ss_pred EeecCchHHHHHHHHHHHHHcCCCH
Q 010501 183 SVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 183 fVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
...+.++.+.+++.+.|.++
T Consensus 158 -----~~~~~l~~~l~~~~~~g~tv 177 (302)
T TIGR01188 158 -----RTRRAIWDYIRALKEEGVTI 177 (302)
T ss_pred -----HHHHHHHHHHHHHHhCCCEE
Confidence 34555566666665555543
No 77
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.64 E-value=1.6e-16 Score=153.16 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=121.1
Q ss_pred eeeeEEEeCcE----EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc------cccc
Q 010501 40 EDTLSFEKGFF----IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRII 108 (509)
Q Consensus 40 ~~~lsf~~g~~----~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~------~r~i 108 (509)
.+++++.++.. .++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.+
T Consensus 4 ~~~v~~~~~~~~~~~~il~~~sl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 4 ADALTKRFRDVKKTVQAVDGVSFTVKPGE---VTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred EEEEEEecCCCCccceeecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 35777777665 79999999999999 99999999999999999999998 78999999987432 2357
Q ss_pred cccCCCCCCCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeee
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~ 171 (509)
++++|++..++..++.+++..... +. .... ...+......|+|+.+++..+++++.++.+++.
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illl 160 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLL 160 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 889999988887889988864321 10 0111 122334456889999999999999999999999
Q ss_pred ccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 172 dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
|||...+|. ...+.+..+.+++.+.|.++
T Consensus 161 DEPt~~LD~-------~~~~~l~~~l~~~~~~~~ti 189 (218)
T cd03266 161 DEPTTGLDV-------MATRALREFIRQLRALGKCI 189 (218)
T ss_pred cCCCcCCCH-------HHHHHHHHHHHHHHHCCCEE
Confidence 999999997 34445555555554445443
No 78
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.64 E-value=2.9e-16 Score=150.76 Aligned_cols=157 Identities=22% Similarity=0.244 Sum_probs=123.1
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---------ccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---------~r~i~ 109 (509)
.+++++.++...+++++||.+++|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+.++
T Consensus 3 ~~~l~~~~~~~~~l~~~s~~i~~G~---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 3 IKNLHKSFGDFHVLKGIDLTVKKGE---VVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred EEEEEEEECCeEeecCceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 3578888877889999999999999 99999999999999999999998 78999999986431 13578
Q ss_pred ccCCCCCCCchhhHHHHHHhhc---cCc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeee
Q 010501 110 GNFDDPRLTDYDTLLENIRGLK---EGK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~---~g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~ 171 (509)
+++|++..++..++.+++.... .+. .... +..+...+..|+|+.+++..+++++.++.+++.
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 159 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLF 159 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 8999998887788888875421 010 0111 122344467889999999999999999999999
Q ss_pred ccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 172 dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
|||...+|. ...+.+.++.+++.+.|.+
T Consensus 160 DEP~~~LD~-------~~~~~l~~~l~~~~~~~~t 187 (213)
T cd03262 160 DEPTSALDP-------ELVGEVLDVMKDLAEEGMT 187 (213)
T ss_pred eCCccCCCH-------HHHHHHHHHHHHHHHcCCE
Confidence 999999997 4556666677766655654
No 79
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.64 E-value=2.8e-16 Score=151.02 Aligned_cols=158 Identities=19% Similarity=0.188 Sum_probs=121.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq 113 (509)
.+++++.++...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.+++++|
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q 79 (213)
T cd03301 3 LENVTKRFGNVTALDDLNLDIADGE---FVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQ 79 (213)
T ss_pred EEeeEEEECCeeeeeceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEec
Confidence 3678888877889999999999999 99999999999999999999998 78999999987432 235788999
Q ss_pred CCCCCchhhHHHHHHhhcc--C---c-----------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 114 DPRLTDYDTLLENIRGLKE--G---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~--g---~-----------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
++..++..++.+++..... + . .... ...+......|+|+.+++..++.++.++.+++.|||..
T Consensus 80 ~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~ 159 (213)
T cd03301 80 NYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLS 159 (213)
T ss_pred ChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9888777788888764211 0 0 0001 12244446789999999999999999999999999999
Q ss_pred CCCeEEEeecCchHHHHHHHHHHHHH-cCCCH
Q 010501 177 LIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (509)
Q Consensus 177 lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~ 207 (509)
.+|. ...+.+..+.+++.. .|.++
T Consensus 160 ~LD~-------~~~~~l~~~l~~~~~~~~~tv 184 (213)
T cd03301 160 NLDA-------KLRVQMRAELKRLQQRLGTTT 184 (213)
T ss_pred cCCH-------HHHHHHHHHHHHHHHHcCCEE
Confidence 9997 344555555555544 35443
No 80
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.64 E-value=2.4e-16 Score=151.34 Aligned_cols=158 Identities=18% Similarity=0.166 Sum_probs=121.0
Q ss_pred eeeeEEEeCc-EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------ccc
Q 010501 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRI 107 (509)
Q Consensus 40 ~~~lsf~~g~-~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----------~r~ 107 (509)
.+++++.++. ..+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.
T Consensus 3 ~~~l~~~~~~~~~~l~~~sl~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 79 (214)
T cd03292 3 FINVTKTYPNGTAALDGINISISAGE---FVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79 (214)
T ss_pred EEEEEEEeCCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHh
Confidence 3567777753 579999999999999 99999999999999999999998 78999999986432 134
Q ss_pred ccccCCCCCCCchhhHHHHHHhhcc--Cc--------------ceecc-ccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 108 IDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 108 i~~~fq~p~~~d~~tl~e~L~~L~~--g~--------------~i~~P-~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
+++++|++..++..++.+++..... +. ....+ ..+...+..|+|+.+++..+++++.++.+++
T Consensus 80 i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 159 (214)
T cd03292 80 IGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILI 159 (214)
T ss_pred eEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEE
Confidence 7889999988888888888865321 00 00111 2233446788999999999999999999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
.|||...+|. ...+.+..+.+++.+.|.++
T Consensus 160 lDEPt~~LD~-------~~~~~~~~~l~~~~~~~~ti 189 (214)
T cd03292 160 ADEPTGNLDP-------DTTWEIMNLLKKINKAGTTV 189 (214)
T ss_pred EeCCCCcCCH-------HHHHHHHHHHHHHHHcCCEE
Confidence 9999999998 34455555666655455543
No 81
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.64 E-value=2.2e-16 Score=154.71 Aligned_cols=159 Identities=19% Similarity=0.177 Sum_probs=121.4
Q ss_pred eeeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------ccc
Q 010501 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRI 107 (509)
Q Consensus 40 ~~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----------~r~ 107 (509)
.+++++.++ ...+++++||.+.+|+ +++|+||||||||||+++|++++ |..|.|.++|.... .+.
T Consensus 4 ~~~l~~~~~~~~~il~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 4 VENLSKVYPNGKQALKNINLNINPGE---FVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred EEeeeeecCCCcceeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 356777776 6779999999999999 99999999999999999999998 78999999986431 234
Q ss_pred ccccCCCCCCCchhhHHHHHHhhcc-------------Ccc-----------eec-cccccCCCCcCCCeeeeecCccEE
Q 010501 108 IDGNFDDPRLTDYDTLLENIRGLKE-------------GKA-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 108 i~~~fq~p~~~d~~tl~e~L~~L~~-------------g~~-----------i~~-P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
+++++|++..++..++.+++..... ... +.. ...+......|+|+.+++..++++
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al 160 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARAL 160 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 7889999888887888888853110 000 001 122344567889999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCHH
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPE 208 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e 208 (509)
+.++.+++.|||...+|. ...+.+..+.+++.. .|.++.
T Consensus 161 ~~~p~llllDEPt~~LD~-------~~~~~l~~~l~~~~~~~~~tii 200 (243)
T TIGR02315 161 AQQPDLILADEPIASLDP-------KTSKQVMDYLKRINKEDGITVI 200 (243)
T ss_pred hcCCCEEEEeCCcccCCH-------HHHHHHHHHHHHHHHHcCCEEE
Confidence 999999999999999997 345555666666543 355543
No 82
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=99.64 E-value=3.6e-17 Score=157.55 Aligned_cols=157 Identities=19% Similarity=0.193 Sum_probs=130.8
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc--------ccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~--------r~i~~ 110 (509)
..++...|+.+.+++++||.+.+|+ +||+.||||+||||...++.++. |+.|.|.+|+.+.+. ..++|
T Consensus 7 a~~l~K~y~kr~Vv~~Vsl~v~~GE---iVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigY 83 (243)
T COG1137 7 AENLAKSYKKRKVVNDVSLEVNSGE---IVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGY 83 (243)
T ss_pred ehhhhHhhCCeeeeeeeeEEEcCCc---EEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCccc
Confidence 3566667788899999999999999 99999999999999999999999 899999999996543 25789
Q ss_pred cCCCCCCCchhhHHHHHHhhccCcceec-------------------cccccCCCCcCCCeeeeecCccEEEEecceeee
Q 010501 111 NFDDPRLTDYDTLLENIRGLKEGKAVQV-------------------PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~g~~i~~-------------------P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~ 171 (509)
.+|++..|-.+++.+|+....+-..... ..-+......|||++.+++.+++|..++.|+|+
T Consensus 84 LpQE~SIFr~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLL 163 (243)
T COG1137 84 LPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIARALAANPKFILL 163 (243)
T ss_pred ccccchHhhcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHHHHHhcCCCEEEe
Confidence 9999999999999999876543211000 112333456899999999999999999999999
Q ss_pred ccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 172 dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
|||+...|+. .+.-+++|.+.++.+|.-
T Consensus 164 DEPFAGVDPi-------aV~dIq~iI~~L~~rgiG 191 (243)
T COG1137 164 DEPFAGVDPI-------AVIDIQRIIKHLKDRGIG 191 (243)
T ss_pred cCCccCCCch-------hHHHHHHHHHHHHhCCce
Confidence 9999999984 567789999999999864
No 83
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.64 E-value=3.1e-16 Score=153.28 Aligned_cols=159 Identities=20% Similarity=0.226 Sum_probs=122.0
Q ss_pred eeeeEEEeCc-EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------ccc
Q 010501 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRI 107 (509)
Q Consensus 40 ~~~lsf~~g~-~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----------~r~ 107 (509)
.+++++.++. ..+++++||.+.+|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+.
T Consensus 3 ~~~l~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (241)
T cd03256 3 VENLSKTYPNGKKALKDVSLSINPGE---FVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79 (241)
T ss_pred EeeEEEecCCccEEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhc
Confidence 3577777776 789999999999999 99999999999999999999998 78999999986432 134
Q ss_pred ccccCCCCCCCchhhHHHHHHhhcc----------C---c-----------ceec-cccccCCCCcCCCeeeeecCccEE
Q 010501 108 IDGNFDDPRLTDYDTLLENIRGLKE----------G---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 108 i~~~fq~p~~~d~~tl~e~L~~L~~----------g---~-----------~i~~-P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
+++++|++..++..++.+++..... + . .... +..+......|+|+.+++..++++
T Consensus 80 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al 159 (241)
T cd03256 80 IGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARAL 159 (241)
T ss_pred cEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHH
Confidence 7889999888877888888753110 0 0 0111 122444567899999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCHH
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPE 208 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e 208 (509)
+.++.+++.|||.+.+|. .....+..+.+++.+ .|.++.
T Consensus 160 ~~~p~llllDEPt~~LD~-------~~~~~l~~~l~~~~~~~~~tii 199 (241)
T cd03256 160 MQQPKLILADEPVASLDP-------ASSRQVMDLLKRINREEGITVI 199 (241)
T ss_pred hcCCCEEEEeCccccCCH-------HHHHHHHHHHHHHHHhcCCEEE
Confidence 999999999999999997 345555666666554 365543
No 84
>PRK10908 cell division protein FtsE; Provisional
Probab=99.64 E-value=2.4e-16 Score=152.76 Aligned_cols=157 Identities=20% Similarity=0.178 Sum_probs=119.9
Q ss_pred eeeeEEEe-CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------ccc
Q 010501 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRI 107 (509)
Q Consensus 40 ~~~lsf~~-g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----------~r~ 107 (509)
.+++++.+ +...+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 4 FEHVSKAYLGGRQALQGVTFHMRPGE---MAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred EEeeEEEecCCCeEEeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 35677777 55679999999999999 99999999999999999999998 68999999986431 235
Q ss_pred ccccCCCCCCCchhhHHHHHHhhc--cCc---c-----------eec-cccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 108 IDGNFDDPRLTDYDTLLENIRGLK--EGK---A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 108 i~~~fq~p~~~d~~tl~e~L~~L~--~g~---~-----------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
+++++|++..++..++.+++.... .+. . ... +..+...+..|+|+.+++..+++++.++.+++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 160 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLL 160 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 788999998777788888886521 110 0 001 12244456788999999999999999999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
.|||...+|. ...+.+..+.+++...|.+
T Consensus 161 lDEPt~~LD~-------~~~~~l~~~l~~~~~~~~t 189 (222)
T PRK10908 161 ADEPTGNLDD-------ALSEGILRLFEEFNRVGVT 189 (222)
T ss_pred EeCCCCcCCH-------HHHHHHHHHHHHHHHCCCE
Confidence 9999999997 3344555555555444544
No 85
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.64 E-value=1.6e-16 Score=152.01 Aligned_cols=157 Identities=14% Similarity=0.107 Sum_probs=121.1
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc------cccccccC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~------~r~i~~~f 112 (509)
.+++++.++...+++++++.+.+|+ ++||+|+||||||||+++|+++. |..|.|.+++.... .+.+++.+
T Consensus 4 ~~~l~~~~~~~~il~~~s~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 4 VIELDFDYHDQPLLQQISFHLPAGG---LLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred EEEEEEEeCCeeEEeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 3677888877889999999999999 99999999999999999999998 78999999987432 13467888
Q ss_pred CCCCCCchhhHHHHHHhhcc--Cc---------ceecc-ccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 113 DDPRLTDYDTLLENIRGLKE--GK---------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 113 q~p~~~d~~tl~e~L~~L~~--g~---------~i~~P-~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
|++..++..++.+++..... .. ....+ ..+...+..|+|+.+++..++.++.++.+++.|||...+|.
T Consensus 81 q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~ 160 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIHFSPGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDE 160 (200)
T ss_pred cccccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCH
Confidence 88877777888888764210 00 01111 22444567889999999999999999999999999999997
Q ss_pred EEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 181 RVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 181 kIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
...+.+..+.+++.+.|.+
T Consensus 161 -------~~~~~l~~~l~~~~~~~~t 179 (200)
T PRK13540 161 -------LSLLTIITKIQEHRAKGGA 179 (200)
T ss_pred -------HHHHHHHHHHHHHHHcCCE
Confidence 3455556666655555544
No 86
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.64 E-value=4.5e-16 Score=148.54 Aligned_cols=138 Identities=16% Similarity=0.176 Sum_probs=110.4
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc------cccccccC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~------~r~i~~~f 112 (509)
.+++++.++...++++++|.+.+|+ +++|+||||||||||+++|++.+ |..|.|.+++.... .+.+++.+
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (198)
T TIGR01189 3 ARNLACSRGERMLFEGLSFTLNAGE---ALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLG 79 (198)
T ss_pred EEEEEEEECCEEEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEec
Confidence 3567777888889999999999999 99999999999999999999998 78999999987432 13467888
Q ss_pred CCCCCCchhhHHHHHHhhcc--C-cc---------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCC
Q 010501 113 DDPRLTDYDTLLENIRGLKE--G-KA---------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (509)
Q Consensus 113 q~p~~~d~~tl~e~L~~L~~--g-~~---------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLD 179 (509)
|++..++..++.+++..... + .. ... +..+...+..|+|+.+++..+++++.++.+++.|||.+.+|
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD 159 (198)
T TIGR01189 80 HLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALD 159 (198)
T ss_pred cCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCC
Confidence 88777776788888764321 1 00 011 12234456788999999999999999999999999999999
Q ss_pred e
Q 010501 180 L 180 (509)
Q Consensus 180 l 180 (509)
.
T Consensus 160 ~ 160 (198)
T TIGR01189 160 K 160 (198)
T ss_pred H
Confidence 7
No 87
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.64 E-value=4.4e-16 Score=152.47 Aligned_cols=158 Identities=18% Similarity=0.167 Sum_probs=121.4
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc------ccccccC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------RIIDGNF 112 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~------r~i~~~f 112 (509)
.+++++.++...+++++||.+.+|+ +++|+|+||||||||+++|+++. |..|.|.+++..... +.+++.+
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 4 VAGLSFAYGARRALDDVSFTVRPGE---FVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred EEeeEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 3677888777889999999999999 99999999999999999999998 789999999874321 3578899
Q ss_pred CCCCCCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeecccc
Q 010501 113 DDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (509)
Q Consensus 113 q~p~~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr 175 (509)
|++..+...++.+++..... +. .... +..+...+..|+|+.+++..+++++.++.+++.|||.
T Consensus 81 q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~ 160 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPT 160 (236)
T ss_pred CCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99887777788888754321 10 0011 1234445678999999999999999999999999999
Q ss_pred CCCCeEEEeecCchHHHHHHHHHHHHH-cCCCH
Q 010501 176 PLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (509)
Q Consensus 176 ~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~ 207 (509)
..+|. ...+.+.++.+++.+ +|.++
T Consensus 161 ~~LD~-------~~~~~l~~~l~~~~~~~~~ti 186 (236)
T TIGR03864 161 VGLDP-------ASRAAIVAHVRALCRDQGLSV 186 (236)
T ss_pred cCCCH-------HHHHHHHHHHHHHHHhCCCEE
Confidence 99998 344555555555543 45543
No 88
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.64 E-value=3.5e-16 Score=146.60 Aligned_cols=136 Identities=17% Similarity=0.240 Sum_probs=110.7
Q ss_pred eeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccccc
Q 010501 41 DTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (509)
Q Consensus 41 ~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~ 110 (509)
+++++.++. ..+++++++.+++|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+.+++
T Consensus 4 ~~l~~~~~~~~~~~l~~~~~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 4 ENVSFRYPGAEPPVLRNVSFSIEPGE---SLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred EEEEEEcCCCCCcceeeeEEEECCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 566766653 469999999999999 99999999999999999999998 78999999986432 235788
Q ss_pred cCCCCCCCchhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchH
Q 010501 111 NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHF 190 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~di 190 (509)
++|++..++ .++.+++ .|+|+.+++..+++++.++.+++.|||...+|. ...
T Consensus 81 ~~q~~~~~~-~tv~~~l--------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~-------~~~ 132 (173)
T cd03246 81 LPQDDELFS-GSIAENI--------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDV-------EGE 132 (173)
T ss_pred ECCCCcccc-CcHHHHC--------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCH-------HHH
Confidence 999987766 4777776 678899999999999999999999999999998 345
Q ss_pred HHHHHHHHHHHHcCCCH
Q 010501 191 DLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 191 rLiRRI~RD~~erG~t~ 207 (509)
..+..+.+++.+.|.++
T Consensus 133 ~~l~~~l~~~~~~~~ti 149 (173)
T cd03246 133 RALNQAIAALKAAGATR 149 (173)
T ss_pred HHHHHHHHHHHhCCCEE
Confidence 55556666655555543
No 89
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.63 E-value=3.7e-16 Score=152.06 Aligned_cols=163 Identities=15% Similarity=0.137 Sum_probs=124.9
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------cccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~~ 110 (509)
.+++++.++...+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.+++
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 3 VSNLNVYYGQSHILRGVSLEVPKGE---VTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred EEeEEEEeCCeEEecceeeEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 3678888887889999999999999 99999999999999999999998 78999999986432 235789
Q ss_pred cCCCCCCCchhhHHHHHHhhcc--Ccc-----------ee-c-cccccCCCCcCCCeeeeecCccEEEEecceeeecccc
Q 010501 111 NFDDPRLTDYDTLLENIRGLKE--GKA-----------VQ-V-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~--g~~-----------i~-~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr 175 (509)
.+|++..++..++.+++..... +.. .. . ...+......|+|+.+++..+++++.++.+++.|||.
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt 159 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPT 159 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 9999988888889888864321 100 00 0 1234445567899999999999999999999999999
Q ss_pred CCCCeEEEeecCchHHHHHHHHHHHHHc-CCCHHHHHH
Q 010501 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIH 212 (509)
Q Consensus 176 ~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~e~Vi~ 212 (509)
..+|. .....+..+.+.+.+. |.++.-+.|
T Consensus 160 ~~LD~-------~~~~~l~~~l~~~~~~~~~tii~~sH 190 (230)
T TIGR03410 160 EGIQP-------SIIKDIGRVIRRLRAEGGMAILLVEQ 190 (230)
T ss_pred ccCCH-------HHHHHHHHHHHHHHHcCCcEEEEEeC
Confidence 99997 3455566666665543 555433333
No 90
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.63 E-value=2.6e-16 Score=151.49 Aligned_cols=156 Identities=16% Similarity=0.190 Sum_probs=117.3
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--cccccccCCCCCC
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDDPRL 117 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--~r~i~~~fq~p~~ 117 (509)
+++++.++...+++++||.+++|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+.+++++|++..
T Consensus 3 ~~l~~~~~~~~~l~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~ 79 (213)
T cd03235 3 EDLTVSYGGHPVLEDVSFEVKPGE---FLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSI 79 (213)
T ss_pred ccceeEECCEEeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEecccccc
Confidence 567777777789999999999999 99999999999999999999998 78999999986432 3457889998865
Q ss_pred Cc--hhhHHHHHHhhccC---------c----c-------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccc
Q 010501 118 TD--YDTLLENIRGLKEG---------K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (509)
Q Consensus 118 ~d--~~tl~e~L~~L~~g---------~----~-------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dEl 174 (509)
.. ..++.+++...... . . ... +..+...+..|+|+.+++..+++++.++.+++.|||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 159 (213)
T cd03235 80 DRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEP 159 (213)
T ss_pred ccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 32 25788887642110 0 0 011 122344567899999999999999999999999999
Q ss_pred cCCCCeEEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 175 r~lLDlkIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
.+.+|. ...+.+..+.+++...|.+
T Consensus 160 t~~LD~-------~~~~~l~~~l~~~~~~~~t 184 (213)
T cd03235 160 FAGVDP-------KTQEDIYELLRELRREGMT 184 (213)
T ss_pred cccCCH-------HHHHHHHHHHHHHHhcCCE
Confidence 999997 3344445555554444444
No 91
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.63 E-value=3.6e-16 Score=151.02 Aligned_cols=138 Identities=16% Similarity=0.092 Sum_probs=111.4
Q ss_pred eeeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc------cccccc
Q 010501 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~------~r~i~~ 110 (509)
.+++++.++. ..+++++||.+++|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+.+++
T Consensus 3 ~~~l~~~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~ 79 (220)
T cd03263 3 IRNLTKTYKKGTKPAVDDLSLNVYKGE---IFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGY 79 (220)
T ss_pred EEeeEEEeCCCCceeecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEE
Confidence 3567777765 789999999999999 99999999999999999999998 78999999987532 235789
Q ss_pred cCCCCCCCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeecc
Q 010501 111 NFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dE 173 (509)
++|++..++..++.+++..... +. .... +..+...+..|+|+.+++..+++++.++.+++.||
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 159 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDE 159 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECC
Confidence 9999988877888888765321 10 0111 12334456788999999999999999999999999
Q ss_pred ccCCCCe
Q 010501 174 LRPLIDL 180 (509)
Q Consensus 174 lr~lLDl 180 (509)
|...+|.
T Consensus 160 P~~~LD~ 166 (220)
T cd03263 160 PTSGLDP 166 (220)
T ss_pred CCCCCCH
Confidence 9999997
No 92
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.63 E-value=3.7e-16 Score=159.25 Aligned_cols=151 Identities=18% Similarity=0.160 Sum_probs=120.2
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc------cccccccC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~------~r~i~~~f 112 (509)
.+++++.++...+++++||.+.+|+ ++||+||||||||||+++|++++ |..|.|.++|.... .+.+++.+
T Consensus 5 ~~~l~~~~~~~~~l~~is~~i~~Ge---i~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 5 VSSLTKLYGTQNALDEVSFEAQKGR---IVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEECCEEEEEEeEEEEeCCe---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 4678888888889999999999999 99999999999999999999998 79999999997432 13578999
Q ss_pred CCCCCCchhhHHHHHHhhcc--Ccc--------------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeecccc
Q 010501 113 DDPRLTDYDTLLENIRGLKE--GKA--------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (509)
Q Consensus 113 q~p~~~d~~tl~e~L~~L~~--g~~--------------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr 175 (509)
|++..++..++.+++..... +.. ... +..+......|+|+.+++..++.++-++.++++|||.
T Consensus 82 q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt 161 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPT 161 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99988888899999875321 100 011 2234445668899999999999999999999999999
Q ss_pred CCCCeEEEeecCchHHHHHHHHHHH
Q 010501 176 PLIDLRVSVTGGVHFDLVKRVFRDI 200 (509)
Q Consensus 176 ~lLDlkIfVd~d~dirLiRRI~RD~ 200 (509)
..+|. ...+.++.+.+.+
T Consensus 162 ~gLD~-------~~~~~l~~~l~~~ 179 (301)
T TIGR03522 162 TGLDP-------NQLVEIRNVIKNI 179 (301)
T ss_pred ccCCH-------HHHHHHHHHHHHh
Confidence 99998 3444445544444
No 93
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.63 E-value=3.5e-16 Score=153.35 Aligned_cols=158 Identities=16% Similarity=0.184 Sum_probs=129.6
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc--------ccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~--------r~i~~ 110 (509)
.++++-.||...+|++|||.+++|+ +++|+|+||+|||||+++|+++. +..|.|.++|.+... ..+++
T Consensus 6 v~~l~~~YG~~~~L~gvsl~v~~Ge---iv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~ 82 (237)
T COG0410 6 VENLSAGYGKIQALRGVSLEVERGE---IVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAY 82 (237)
T ss_pred EEeEeecccceeEEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEe
Confidence 3678888999999999999999999 99999999999999999999999 578999999986543 35789
Q ss_pred cCCCCCCCchhhHHHHHHhh---ccCcc--------------eeccccccCCCCcCCCeeeeecCccEEEEecceeeecc
Q 010501 111 NFDDPRLTDYDTLLENIRGL---KEGKA--------------VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L---~~g~~--------------i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dE 173 (509)
++|.-+.|+.+++.|||..- ...+. ...+..+...++.|||++|-++.+++|+-.+.++|+||
T Consensus 83 VPegR~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDE 162 (237)
T COG0410 83 VPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDE 162 (237)
T ss_pred CcccccchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecC
Confidence 99999999999999999752 11111 11123455567889999999999999999999999999
Q ss_pred ccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCH
Q 010501 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEP 207 (509)
Q Consensus 174 lr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~ 207 (509)
|...+-++| +.-+-++++++++. |.|+
T Consensus 163 Ps~GLaP~i-------v~~I~~~i~~l~~~~g~tI 190 (237)
T COG0410 163 PSEGLAPKI-------VEEIFEAIKELRKEGGMTI 190 (237)
T ss_pred CccCcCHHH-------HHHHHHHHHHHHHcCCcEE
Confidence 999998854 45566777777755 5454
No 94
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.63 E-value=4.2e-16 Score=156.06 Aligned_cols=158 Identities=16% Similarity=0.193 Sum_probs=122.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------cccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRII 108 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----------~r~i 108 (509)
.+++++.++...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.+
T Consensus 10 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i 86 (269)
T PRK11831 10 MRGVSFTRGNRCIFDNISLTVPRGK---ITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRM 86 (269)
T ss_pred EeCeEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcE
Confidence 4678888888889999999999999 99999999999999999999998 78999999986432 2347
Q ss_pred cccCCCCCCCchhhHHHHHHhhcc---C--c------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKE---G--K------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~---g--~------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
++++|++..++..++.+++..... + . .+.. ...+...+..|+|+.+++..+++++.++.+++
T Consensus 87 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lll 166 (269)
T PRK11831 87 SMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIM 166 (269)
T ss_pred EEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 889999988887888888864210 0 0 0111 12344456789999999999999999999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCH
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEP 207 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~ 207 (509)
.|||...+|. ...+.+.++.+.+... |.++
T Consensus 167 LDEPt~~LD~-------~~~~~l~~~l~~~~~~~g~ti 197 (269)
T PRK11831 167 FDEPFVGQDP-------ITMGVLVKLISELNSALGVTC 197 (269)
T ss_pred EcCCCccCCH-------HHHHHHHHHHHHHHHhcCcEE
Confidence 9999999998 3455556666665443 5554
No 95
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.63 E-value=3.9e-15 Score=157.46 Aligned_cols=163 Identities=21% Similarity=0.291 Sum_probs=119.0
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhhC-C---CeeEEEECCccCccc---cc-cccC--------CCCCCCchhhHHHHH
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDNYNDSSR---II-DGNF--------DDPRLTDYDTLLENI 127 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~ll-p---~~g~I~~D~y~~~~r---~i-~~~f--------q~p~~~d~~tl~e~L 127 (509)
.+|++|||+|++|||||||++.|.+++ + .++.|++|||+.... .. ..++ ..|..+|.....+++
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfYLt~eer~kL~~~nP~n~LL~~RG~PGTHDv~Lg~e~L 289 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFYLTAEGQAELRERNPGNALLELRGNAGSHDLQFSVETL 289 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCccCChHHHHHHHhhCccchhhcccCCCccccHhhHHHHH
Confidence 369999999999999999999999888 3 389999999986431 11 0111 235678887777777
Q ss_pred Hhh----ccCcceeccccccCCCC----cCCCe--eeeecCccEEEEecceeeecc-c----------------------
Q 010501 128 RGL----KEGKAVQVPIYDFKSSS----RIGYR--TLEVPSSRIVIIEGIYALSEK-L---------------------- 174 (509)
Q Consensus 128 ~~L----~~g~~i~~P~yD~~~~~----rsgg~--~~~v~~a~VLIVEGi~aL~dE-l---------------------- 174 (509)
..+ ++|+.+.+|+||+..+. |...+ +....+.+|||+||++++... .
T Consensus 290 ~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D~~l~~VN~~L~~Y~ 369 (460)
T PLN03046 290 EALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVDPQLEVVNKNLEAYY 369 (460)
T ss_pred HHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccChhHHHHHHHHHHHH
Confidence 776 57889999999999865 44321 344688999999999987621 1
Q ss_pred ---cCCCCeEEEeecCc-hHHHHHHHHHHHHHc-----CCCHHHHHHHHHHhhhhHHHHhhc
Q 010501 175 ---RPLIDLRVSVTGGV-HFDLVKRVFRDIQRV-----GQEPEEIIHQISETVYPMYKAFIE 227 (509)
Q Consensus 175 ---r~lLDlkIfVd~d~-dirLiRRI~RD~~er-----G~t~e~Vi~~y~~~V~P~~~~fIe 227 (509)
...+|..|.+.++. +.-..+|+.++.+.+ |++.++| .+|.++.+|.|+.|..
T Consensus 370 ~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMsdeqV-~~FV~~YmPaY~~y~~ 430 (460)
T PLN03046 370 DAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMSDEEV-MDFVSRYLPAYKAYLP 430 (460)
T ss_pred HHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCCHHHH-HHHHHHhhhHHHHHHH
Confidence 11466777777654 666777887777654 6777775 5577888999998864
No 96
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=6.4e-16 Score=147.30 Aligned_cols=145 Identities=12% Similarity=0.019 Sum_probs=115.1
Q ss_pred eeeeEEEeCc----EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC---CCeeEEEECCccCc---ccccc
Q 010501 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDS---SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~----~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll---p~~g~I~~D~y~~~---~r~i~ 109 (509)
.+++++.++. ..+++++||.+++|+ +++|+|+||||||||+++|++.. |..|.|.+++.... .+.++
T Consensus 6 ~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 6 WKNLNYTVPVKGGKRQLLNNISGYVKPGT---LTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EeeeEEEecCCCCceEeEEccEEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 3566666653 679999999999999 99999999999999999999974 58999999986532 24578
Q ss_pred ccCCCCCCCchhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCch
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVH 189 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~d 189 (509)
+++|++..++..++.+++...... ...|+|+.+++..+++++.++.+++.|||...+|. ..
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~~~------------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~-------~~ 143 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSALL------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDS-------QA 143 (192)
T ss_pred EecccCccccCCcHHHHHHHHHHH------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCH-------HH
Confidence 899998888888999998753210 17889999999999999999999999999999997 33
Q ss_pred HHHHHHHHHHHHHcCCC
Q 010501 190 FDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 190 irLiRRI~RD~~erG~t 206 (509)
...+..+.+.+.+.|.+
T Consensus 144 ~~~l~~~l~~~~~~~~t 160 (192)
T cd03232 144 AYNIVRFLKKLADSGQA 160 (192)
T ss_pred HHHHHHHHHHHHHcCCE
Confidence 44455555554444443
No 97
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=5.3e-16 Score=152.29 Aligned_cols=161 Identities=16% Similarity=0.156 Sum_probs=124.7
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------------c
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------S 105 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------------~ 105 (509)
.+++++.++...+++++||.+.+|+ +++|+|+||||||||+++|++.. |..|.|.+++.... .
T Consensus 5 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 5 LNGINCFYGAHQALFDITLDCPQGE---TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEeeEEEECCeeeEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 4577888877889999999999999 99999999999999999999998 78999999986421 1
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhc---cCc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecc
Q 010501 106 RIIDGNFDDPRLTDYDTLLENIRGLK---EGK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 106 r~i~~~fq~p~~~d~~tl~e~L~~L~---~g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi 167 (509)
+.+++++|++..++..++.+++.... .+. .... +..+......|+|+.+++..+++++.++.
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~ 161 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 34788999998888888888875310 000 0111 12344456788999999999999999999
Q ss_pred eeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHH
Q 010501 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (509)
Q Consensus 168 ~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~V 210 (509)
+++.|||.+.+|. ...+.+..+.+++.+.|.++.-+
T Consensus 162 llilDEPt~~LD~-------~~~~~l~~~l~~~~~~~~tii~~ 197 (242)
T PRK11124 162 VLLFDEPTAALDP-------EITAQIVSIIRELAETGITQVIV 197 (242)
T ss_pred EEEEcCCCCcCCH-------HHHHHHHHHHHHHHHcCCEEEEE
Confidence 9999999999997 34556666666666566654333
No 98
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.63 E-value=5.3e-16 Score=152.12 Aligned_cols=158 Identities=20% Similarity=0.148 Sum_probs=122.4
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---------ccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---------~r~i~ 109 (509)
.+++++.++...+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.++
T Consensus 4 ~~~l~~~~~~~~il~~~s~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 4 FKNVSKHFGPTQVLHNIDLNIDQGE---VVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEeEEEEECCeEEeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 4677887777889999999999999 99999999999999999999998 78999999987532 12478
Q ss_pred ccCCCCCCCchhhHHHHHHhhcc---C--c------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeee
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKE---G--K------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~---g--~------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~ 171 (509)
+.+|++..+...++.+++..... + . .... +..+......|+|+.+++..+++++.++.+++.
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llll 160 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLF 160 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEE
Confidence 89999888877788888754210 1 0 0011 223445567889999999999999999999999
Q ss_pred ccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 172 dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
|||...+|. .....+.++.+++.+.|.++
T Consensus 161 DEP~~~LD~-------~~~~~l~~~l~~~~~~~~ti 189 (240)
T PRK09493 161 DEPTSALDP-------ELRHEVLKVMQDLAEEGMTM 189 (240)
T ss_pred cCCcccCCH-------HHHHHHHHHHHHHHHcCCEE
Confidence 999999998 34455555666655555553
No 99
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.63 E-value=6.1e-16 Score=148.47 Aligned_cols=157 Identities=18% Similarity=0.164 Sum_probs=119.0
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc------cccccccC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~------~r~i~~~f 112 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.+++.... .+.+++.+
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 4 ARNLACERDERILFSGLSFTLNAGE---LVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred EEEEEEEECCEEEEecceEEECCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 3577787777889999999999999 99999999999999999999998 78999999986432 23467788
Q ss_pred CCCCCCchhhHHHHHHhhcc--C-c---c-------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCC
Q 010501 113 DDPRLTDYDTLLENIRGLKE--G-K---A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (509)
Q Consensus 113 q~p~~~d~~tl~e~L~~L~~--g-~---~-------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lL 178 (509)
+.+..++..++.+++..... + . . ... +..+......|+|+.+++..+++++-++.+++.|||.+.+
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 160 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAI 160 (204)
T ss_pred CccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 88877777788888865321 1 0 0 001 1224445678899999999999999999999999999999
Q ss_pred CeEEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 179 DLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 179 DlkIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
|. .....+..+.++..+.|.+
T Consensus 161 D~-------~~~~~l~~~l~~~~~~~~t 181 (204)
T PRK13538 161 DK-------QGVARLEALLAQHAEQGGM 181 (204)
T ss_pred CH-------HHHHHHHHHHHHHHHCCCE
Confidence 98 3344444555444433433
No 100
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.63 E-value=7.2e-16 Score=151.25 Aligned_cols=159 Identities=18% Similarity=0.193 Sum_probs=122.4
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------cccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~~ 110 (509)
.+++++.++...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++.... ++.+++
T Consensus 6 ~~~l~~~~~~~~~l~~~sl~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 6 AKNLAKAYKGRRVVEDVSLTVNSGE---IVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred EeCcEEEeCCEEEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 3577787777889999999999999 99999999999999999999998 78999999986432 235789
Q ss_pred cCCCCCCCchhhHHHHHHhhcc---C---cc-----------eecc-ccccCCCCcCCCeeeeecCccEEEEecceeeec
Q 010501 111 NFDDPRLTDYDTLLENIRGLKE---G---KA-----------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~---g---~~-----------i~~P-~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d 172 (509)
++|++..++..++.+++..... + .. .... ..+......|+|+.+++..++.++.++.+++.|
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 162 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLD 162 (241)
T ss_pred eccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999988887888888765321 0 00 0011 123334568899999999999999999999999
Q ss_pred cccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHH
Q 010501 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (509)
Q Consensus 173 Elr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e 208 (509)
||...+|. .....+..+.+++...|.++.
T Consensus 163 EPt~~LD~-------~~~~~l~~~l~~~~~~g~tii 191 (241)
T PRK10895 163 EPFAGVDP-------ISVIDIKRIIEHLRDSGLGVL 191 (241)
T ss_pred CCcccCCH-------HHHHHHHHHHHHHHhcCCEEE
Confidence 99999997 344455556666655565543
No 101
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.63 E-value=3.8e-16 Score=156.12 Aligned_cols=159 Identities=18% Similarity=0.154 Sum_probs=123.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccC--ccccccccCCCCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND--SSRIIDGNFDDPR 116 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~--~~r~i~~~fq~p~ 116 (509)
.+++++.++...+++++||.+.+|+ +++|+||||||||||+++|++++ |..|.|.+++... ..+.+++++|++.
T Consensus 15 i~~l~~~~~~~~il~~isl~i~~Ge---~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~ 91 (257)
T PRK11247 15 LNAVSKRYGERTVLNQLDLHIPAGQ---FVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQDAR 91 (257)
T ss_pred EEEEEEEECCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecCcc
Confidence 4678888877889999999999999 99999999999999999999998 7899999887532 2345789999998
Q ss_pred CCchhhHHHHHHhhccCc----------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEee
Q 010501 117 LTDYDTLLENIRGLKEGK----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (509)
Q Consensus 117 ~~d~~tl~e~L~~L~~g~----------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd 185 (509)
.++..++.+++....... .... +..+......|+|+.+++..+++++.++.+++.|||...+|.
T Consensus 92 l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~----- 166 (257)
T PRK11247 92 LLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDA----- 166 (257)
T ss_pred CCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH-----
Confidence 888788999886421110 0111 223444567899999999999999999999999999999998
Q ss_pred cCchHHHHHHHHHHHH-HcCCCHH
Q 010501 186 GGVHFDLVKRVFRDIQ-RVGQEPE 208 (509)
Q Consensus 186 ~d~dirLiRRI~RD~~-erG~t~e 208 (509)
.....+..+.+++. +.|.++.
T Consensus 167 --~~~~~l~~~L~~~~~~~~~tvi 188 (257)
T PRK11247 167 --LTRIEMQDLIESLWQQHGFTVL 188 (257)
T ss_pred --HHHHHHHHHHHHHHHHcCCEEE
Confidence 34555556666653 3465543
No 102
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.63 E-value=4.7e-16 Score=152.82 Aligned_cols=163 Identities=20% Similarity=0.191 Sum_probs=124.2
Q ss_pred eeeeEEEeCc-EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccccc
Q 010501 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~-~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~ 110 (509)
.+++++.++. ..+++++||.+.+|+ +++|+||||||||||+++|++.+ |..|.|.+++.... .+.+++
T Consensus 3 ~~~l~~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (242)
T cd03295 3 FENVTKRYGGGKKAVNNLNLEIAKGE---FLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGY 79 (242)
T ss_pred EEEEEEEeCCcceEeeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEE
Confidence 3567777776 779999999999999 99999999999999999999998 78999999987432 135788
Q ss_pred cCCCCCCCchhhHHHHHHhhcc--C--------------cceecc---ccccCCCCcCCCeeeeecCccEEEEecceeee
Q 010501 111 NFDDPRLTDYDTLLENIRGLKE--G--------------KAVQVP---IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~--g--------------~~i~~P---~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~ 171 (509)
++|++..++..++.+++..... + ..+..+ ..+......|+|+.+++..+++++.++.+++.
T Consensus 80 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 159 (242)
T cd03295 80 VIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLM 159 (242)
T ss_pred EccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 9999988888889888864311 0 001122 22444467889999999999999999999999
Q ss_pred ccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCHHHHHH
Q 010501 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIH 212 (509)
Q Consensus 172 dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e~Vi~ 212 (509)
|||.+.+|. .....+.++.+++.. +|.++.-+.|
T Consensus 160 DEPt~~LD~-------~~~~~l~~~L~~~~~~~g~tvii~sH 194 (242)
T cd03295 160 DEPFGALDP-------ITRDQLQEEFKRLQQELGKTIVFVTH 194 (242)
T ss_pred cCCcccCCH-------HHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 999999997 345555666666554 3655433333
No 103
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.63 E-value=1.8e-16 Score=165.24 Aligned_cols=154 Identities=19% Similarity=0.179 Sum_probs=117.5
Q ss_pred eeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----------ccccc
Q 010501 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIID 109 (509)
Q Consensus 42 ~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----------~r~i~ 109 (509)
++++.++.+.+ ++||.+++|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+.++
T Consensus 5 ~l~k~~~~~~~--~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~ 79 (352)
T PRK11144 5 NFKQQLGDLCL--TVNLTLPAQG---ITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIG 79 (352)
T ss_pred EEEEEeCCEEE--EEEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEE
Confidence 56666666543 8999999999 99999999999999999999998 78999999885321 24578
Q ss_pred ccCCCCCCCchhhHHHHHHhhccCc----------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCC
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEGK----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g~----------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lL 178 (509)
++||++..++..++.+++....... .+.. +..+...+..|+|+.+++..++.++.++.+++.|||...+
T Consensus 80 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~L 159 (352)
T PRK11144 80 YVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred EEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccC
Confidence 9999999999999999986532110 0111 2345566788999999999999999999999999999999
Q ss_pred CeEEEeecCchHHHHHHHHHHHHHc-CCCH
Q 010501 179 DLRVSVTGGVHFDLVKRVFRDIQRV-GQEP 207 (509)
Q Consensus 179 DlkIfVd~d~dirLiRRI~RD~~er-G~t~ 207 (509)
|. ...+.++.+.+++.+. |.++
T Consensus 160 D~-------~~~~~l~~~L~~l~~~~g~ti 182 (352)
T PRK11144 160 DL-------PRKRELLPYLERLAREINIPI 182 (352)
T ss_pred CH-------HHHHHHHHHHHHHHHhcCCeE
Confidence 98 2344444555554432 4443
No 104
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.63 E-value=5.8e-16 Score=154.15 Aligned_cols=159 Identities=17% Similarity=0.136 Sum_probs=123.1
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--cccccccCCCCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDDPR 116 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--~r~i~~~fq~p~ 116 (509)
.+++++.++...+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++.... ...+++++|++.
T Consensus 4 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~ 80 (255)
T PRK11248 4 ISHLYADYGGKPALEDINLTLESGE---LLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG 80 (255)
T ss_pred EEEEEEEeCCeeeEeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc
Confidence 3677887777789999999999999 99999999999999999999998 78999999987532 234788999988
Q ss_pred CCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCC
Q 010501 117 LTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (509)
Q Consensus 117 ~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLD 179 (509)
.++..++.+++..... +. .... +..+......|+|+.+++..+++++.++.+++.|||.+.+|
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD 160 (255)
T PRK11248 81 LLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALD 160 (255)
T ss_pred cCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCC
Confidence 8887888888864211 10 0011 12244456789999999999999999999999999999999
Q ss_pred eEEEeecCchHHHHHHHHHHHH-HcCCCHH
Q 010501 180 LRVSVTGGVHFDLVKRVFRDIQ-RVGQEPE 208 (509)
Q Consensus 180 lkIfVd~d~dirLiRRI~RD~~-erG~t~e 208 (509)
. ...+.+..+.+++. +.|.++.
T Consensus 161 ~-------~~~~~l~~~L~~~~~~~g~tvi 183 (255)
T PRK11248 161 A-------FTREQMQTLLLKLWQETGKQVL 183 (255)
T ss_pred H-------HHHHHHHHHHHHHHHhcCCEEE
Confidence 8 34556666666653 3466543
No 105
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.62 E-value=5.9e-16 Score=152.44 Aligned_cols=158 Identities=18% Similarity=0.158 Sum_probs=122.0
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------------- 104 (509)
.+++++.++...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++....
T Consensus 6 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 6 VKNLVKKFHGQTVLHGIDLEVKPGE---VVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred EeceEEEECCeeeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 4677888877789999999999999 99999999999999999999998 78999999875321
Q ss_pred -cccccccCCCCCCCchhhHHHHHHhhc---cCc-------c-------eec-cccccCCCCcCCCeeeeecCccEEEEe
Q 010501 105 -SRIIDGNFDDPRLTDYDTLLENIRGLK---EGK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIE 165 (509)
Q Consensus 105 -~r~i~~~fq~p~~~d~~tl~e~L~~L~---~g~-------~-------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVE 165 (509)
.+.+++++|++..++..++.+++.... .+. . ... +..+...+..|+|+.+++..+++++.+
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~ 162 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMR 162 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcC
Confidence 134788999988887788888875421 110 0 011 122444567899999999999999999
Q ss_pred cceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 166 Gi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
+.+++.|||...+|. ...+.+..+.+++.+.|.++
T Consensus 163 p~lllLDEPt~~LD~-------~~~~~l~~~l~~~~~~~~tv 197 (250)
T PRK11264 163 PEVILFDEPTSALDP-------ELVGEVLNTIRQLAQEKRTM 197 (250)
T ss_pred CCEEEEeCCCccCCH-------HHHHHHHHHHHHHHhcCCEE
Confidence 999999999999997 34555566666665556553
No 106
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.62 E-value=4.8e-16 Score=150.49 Aligned_cols=157 Identities=19% Similarity=0.267 Sum_probs=115.8
Q ss_pred eeeeEEEeCcE----EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------
Q 010501 40 EDTLSFEKGFF----IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~----~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---------- 104 (509)
.+++++.++.. .+++++||.+++|+ +++|+||||||||||+++|++.+ |..|.|.+++....
T Consensus 4 ~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 4 VKNLSVSFPTGGGSVKALDDVSFSIKKGE---TLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred EEeeeEeccCCCcceeeecCceeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 35777777654 79999999999999 99999999999999999999998 78999999987431
Q ss_pred cccccccCCCC--CCCchhhHHHHHHhhc--cC--------c--------ceec--cccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDP--RLTDYDTLLENIRGLK--EG--------K--------AVQV--PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p--~~~d~~tl~e~L~~L~--~g--------~--------~i~~--P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++ ..+...++.+++.... .+ . .... +..+......|+|+.+++..++++
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral 160 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARAL 160 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHH
Confidence 13578899988 3445567777764311 00 0 0111 122444567889999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCC
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQE 206 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t 206 (509)
+.++.+++.|||...+|. .....+..+.+++... |.+
T Consensus 161 ~~~p~lllLDEPt~~LD~-------~~~~~l~~~l~~~~~~~~~t 198 (228)
T cd03257 161 ALNPKLLIADEPTSALDV-------SVQAQILDLLKKLQEELGLT 198 (228)
T ss_pred hcCCCEEEecCCCCCCCH-------HHHHHHHHHHHHHHHHcCCE
Confidence 999999999999999997 3344455555554433 544
No 107
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.62 E-value=7.9e-16 Score=147.53 Aligned_cols=138 Identities=16% Similarity=0.157 Sum_probs=111.0
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc------cccccccC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~------~r~i~~~f 112 (509)
.+++++.++...++++++|.+++|+ ++||+|+||||||||+++|++++ |..|.|.+++.... .+.+++.+
T Consensus 3 i~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 79 (201)
T cd03231 3 ADELTCERDGRALFSGLSFTLAAGE---ALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLG 79 (201)
T ss_pred EEEEEEEeCCceeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEec
Confidence 3677887777889999999999999 99999999999999999999998 78999999886432 13577888
Q ss_pred CCCCCCchhhHHHHHHhhccCc----------ceecc-ccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 113 DDPRLTDYDTLLENIRGLKEGK----------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 113 q~p~~~d~~tl~e~L~~L~~g~----------~i~~P-~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
|++..++..++.+++....... ....+ ..+......|+|+.+++..+++++.++.+++.|||...+|.
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~ 158 (201)
T cd03231 80 HAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDK 158 (201)
T ss_pred cccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 8888777788888876542110 01111 12334456789999999999999999999999999999997
No 108
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.62 E-value=7.9e-16 Score=163.32 Aligned_cols=163 Identities=21% Similarity=0.213 Sum_probs=128.6
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~~ 111 (509)
.+++++.++.+.+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.++|.... .+.++++
T Consensus 6 ~~nls~~y~~~~vL~~vs~~i~~Ge---iv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v 82 (402)
T PRK09536 6 VSDLSVEFGDTTVLDGVDLSVREGS---LVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASV 82 (402)
T ss_pred EeeEEEEECCEEEEEeeEEEECCCC---EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEE
Confidence 4678888888999999999999999 99999999999999999999998 78999999997532 2457899
Q ss_pred CCCCCCCchhhHHHHHHhhcc---------Cc-----------ceec-cccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 112 FDDPRLTDYDTLLENIRGLKE---------GK-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 112 fq~p~~~d~~tl~e~L~~L~~---------g~-----------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
+|++..+...++.+++...+. .. .+.. ...+....+.|+|+++++..+++++-++.+++
T Consensus 83 ~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLL 162 (402)
T PRK09536 83 PQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLL 162 (402)
T ss_pred ccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999988777888888764321 00 0011 22344456789999999999999999999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
+|||...||+ .....++.+.+++.+.|.++.-+.|
T Consensus 163 LDEPtsgLD~-------~~~~~l~~lL~~l~~~g~TIIivsH 197 (402)
T PRK09536 163 LDEPTASLDI-------NHQVRTLELVRRLVDDGKTAVAAIH 197 (402)
T ss_pred EECCcccCCH-------HHHHHHHHHHHHHHhcCCEEEEEEC
Confidence 9999999998 3555667777777666665433333
No 109
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.62 E-value=4e-16 Score=156.34 Aligned_cols=158 Identities=16% Similarity=0.152 Sum_probs=123.9
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----------ccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRI 107 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----------~r~ 107 (509)
.+++++.++...++++++|.+++|+ +++|+||||||||||+++|++++ |..|.|.++|.... .+.
T Consensus 27 ~~~~~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 27 KEEILKKTGQTVGVNDVSLDVREGE---IFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhcCCceEeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 4577778888899999999999999 99999999999999999999998 78999999987432 135
Q ss_pred ccccCCCCCCCchhhHHHHHHhhcc--C--c------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 108 IDGNFDDPRLTDYDTLLENIRGLKE--G--K------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 108 i~~~fq~p~~~d~~tl~e~L~~L~~--g--~------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
+++++|++..++..++.+++..... + . .+.. +..+...+..|+|+.+++..+++++.++.+++
T Consensus 104 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~ill 183 (269)
T cd03294 104 ISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDILL 183 (269)
T ss_pred EEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7889999988888888888865211 0 0 0111 22344556789999999999999999999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCH
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEP 207 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~ 207 (509)
.|||...+|. ...+.+..+.+++... |.++
T Consensus 184 LDEPt~~LD~-------~~~~~l~~~l~~~~~~~g~ti 214 (269)
T cd03294 184 MDEAFSALDP-------LIRREMQDELLRLQAELQKTI 214 (269)
T ss_pred EcCCCccCCH-------HHHHHHHHHHHHHHHhcCCEE
Confidence 9999999998 3455666666666433 5553
No 110
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.62 E-value=8.5e-16 Score=149.35 Aligned_cols=158 Identities=15% Similarity=0.141 Sum_probs=119.5
Q ss_pred eeeeEEEeCc----EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------
Q 010501 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (509)
Q Consensus 40 ~~~lsf~~g~----~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---------- 104 (509)
.+++++.++. ..+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++....
T Consensus 9 ~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 9 VHHLKKSVGQGEHELSILTGVELVVKRGE---TIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred EeeeEEEccCCCcceEEEeccEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 3566776654 369999999999999 99999999999999999999998 78999999986432
Q ss_pred -cccccccCCCCCCCchhhHHHHHHhhc--cCc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEec
Q 010501 105 -SRIIDGNFDDPRLTDYDTLLENIRGLK--EGK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 105 -~r~i~~~fq~p~~~d~~tl~e~L~~L~--~g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEG 166 (509)
.+.+++++|++..++..++.+++.... .+. .... ...+...+..|+|+.+++..+++++.++
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p 165 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRP 165 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 134788999988877778888875421 000 0111 1223445678899999999999999999
Q ss_pred ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCH
Q 010501 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (509)
Q Consensus 167 i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~ 207 (509)
.+++.|||...+|. .....+..+.+++.. .|.++
T Consensus 166 ~llllDEPt~~LD~-------~~~~~l~~~l~~~~~~~~~ti 200 (228)
T PRK10584 166 DVLFADEPTGNLDR-------QTGDKIADLLFSLNREHGTTL 200 (228)
T ss_pred CEEEEeCCCCCCCH-------HHHHHHHHHHHHHHHhcCCEE
Confidence 99999999999997 345556666666543 35543
No 111
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.62 E-value=7.8e-16 Score=152.70 Aligned_cols=161 Identities=19% Similarity=0.167 Sum_probs=124.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------------- 104 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++....
T Consensus 8 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 84 (257)
T PRK10619 8 VIDLHKRYGEHEVLKGVSLQANAGD---VISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADK 84 (257)
T ss_pred EeeeEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccc
Confidence 5678888877889999999999999 99999999999999999999998 68899999986421
Q ss_pred ------cccccccCCCCCCCchhhHHHHHHhhc----cCc-------------ceecccc--ccCCCCcCCCeeeeecCc
Q 010501 105 ------SRIIDGNFDDPRLTDYDTLLENIRGLK----EGK-------------AVQVPIY--DFKSSSRIGYRTLEVPSS 159 (509)
Q Consensus 105 ------~r~i~~~fq~p~~~d~~tl~e~L~~L~----~g~-------------~i~~P~y--D~~~~~rsgg~~~~v~~a 159 (509)
.+.+++++|++..++..++.+++.... ... ......+ +......|+|+.+++..+
T Consensus 85 ~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~la 164 (257)
T PRK10619 85 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 164 (257)
T ss_pred hHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 135789999998888888998885311 100 0111211 334467889999999999
Q ss_pred cEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHH
Q 010501 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (509)
Q Consensus 160 ~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~V 210 (509)
++++.++.+++.|||...+|. ...+.+.++.+.+.+.|.++.-+
T Consensus 165 ral~~~p~llllDEPt~~LD~-------~~~~~l~~~l~~l~~~g~tiiiv 208 (257)
T PRK10619 165 RALAMEPEVLLFDEPTSALDP-------ELVGEVLRIMQQLAEEGKTMVVV 208 (257)
T ss_pred HHHhcCCCEEEEeCCcccCCH-------HHHHHHHHHHHHHHhcCCEEEEE
Confidence 999999999999999999998 45556666666665556654333
No 112
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=99.62 E-value=8.4e-16 Score=150.39 Aligned_cols=158 Identities=12% Similarity=0.139 Sum_probs=119.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC---CCeeEEEECCccCcc--------ccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDSS--------RII 108 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll---p~~g~I~~D~y~~~~--------r~i 108 (509)
.+++++.++...+++++||.+++|+ +++|+||||||||||+++|++++ |..|.|.+++..... ..+
T Consensus 3 ~~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 3 IKDLHVSVEDKEILKGVNLTVKKGE---IHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred EeeEEEEECCEEEEeccceEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 3678888877889999999999999 99999999999999999999984 689999999864321 226
Q ss_pred cccCCCCCCCchhhHHHHHHhhccC------------c-----------ceecc--ccccCCC-CcCCCeeeeecCccEE
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKEG------------K-----------AVQVP--IYDFKSS-SRIGYRTLEVPSSRIV 162 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~g------------~-----------~i~~P--~yD~~~~-~rsgg~~~~v~~a~VL 162 (509)
++++|++..++..++.+++...... . ....+ ..+.... ..|+|+.+++..++++
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al 159 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMA 159 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHH
Confidence 7889999888877777776542110 0 01111 1233334 4889999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
+.++.+++.|||...+|. .....+.++.+.+.+.|.++
T Consensus 160 ~~~p~llllDEPt~~LD~-------~~~~~l~~~l~~~~~~~~tv 197 (243)
T TIGR01978 160 LLEPKLAILDEIDSGLDI-------DALKIVAEGINRLREPDRSF 197 (243)
T ss_pred hcCCCEEEecCCcccCCH-------HHHHHHHHHHHHHHHCCcEE
Confidence 999999999999999998 34555556666655555543
No 113
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.61 E-value=1.1e-15 Score=147.25 Aligned_cols=157 Identities=15% Similarity=0.182 Sum_probs=117.8
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----cccccccCCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDD 114 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----~r~i~~~fq~ 114 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|+++. |..|.|.+++.... .+.++++++.
T Consensus 5 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 5 GEDLACVRGGRVLFSGLSFTLAAGE---ALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEeEEEEECCeEEEeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCC
Confidence 4567777777789999999999999 99999999999999999999998 78999999986421 2346777777
Q ss_pred CCCCchhhHHHHHHhhcc--Cc-c---------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeE
Q 010501 115 PRLTDYDTLLENIRGLKE--GK-A---------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (509)
Q Consensus 115 p~~~d~~tl~e~L~~L~~--g~-~---------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlk 181 (509)
+..++..++.+++..... +. . +.. +..+...+..|+|+.+++..+++++.++.+++.|||...+|.
T Consensus 82 ~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~- 160 (207)
T PRK13539 82 NAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDA- 160 (207)
T ss_pred CcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH-
Confidence 766667788888754221 10 0 111 122444567889999999999999999999999999999998
Q ss_pred EEeecCchHHHHHHHHHHHHHcCCC
Q 010501 182 VSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 182 IfVd~d~dirLiRRI~RD~~erG~t 206 (509)
...+.+..+.++..+.|.+
T Consensus 161 ------~~~~~l~~~l~~~~~~~~t 179 (207)
T PRK13539 161 ------AAVALFAELIRAHLAQGGI 179 (207)
T ss_pred ------HHHHHHHHHHHHHHHCCCE
Confidence 2344455555554444544
No 114
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.61 E-value=7.1e-16 Score=147.33 Aligned_cols=145 Identities=15% Similarity=0.102 Sum_probs=117.0
Q ss_pred eeeeEEEeCc------EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC--C-CeeEEEECCccCc----cc
Q 010501 40 EDTLSFEKGF------FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--P-SIAVITMDNYNDS----SR 106 (509)
Q Consensus 40 ~~~lsf~~g~------~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll--p-~~g~I~~D~y~~~----~r 106 (509)
.+++++.++. ..++++++|.+++|+ +++|+||||||||||+++|++++ + ..|.|.+|+.... .+
T Consensus 6 ~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge---~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 6 FRNLTVTVKSSPSKSGKQLLKNVSGKAKPGE---LTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEeeEEEEecCCCcccccceecceEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 4677777754 679999999999999 99999999999999999999997 4 7899999987542 24
Q ss_pred cccccCCCCCCCchhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeec
Q 010501 107 IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (509)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~ 186 (509)
.+++.+|++..++..++.+++..... . ...|+|+.+++..+++++.++.+++.|||.+.+|.
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~~---~---------~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~------ 144 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAAK---L---------RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDS------ 144 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHHH---h---------ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCH------
Confidence 57889999988888899998865321 0 16788999999999999999999999999999997
Q ss_pred CchHHHHHHHHHHHHHcCCC
Q 010501 187 GVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 187 d~dirLiRRI~RD~~erG~t 206 (509)
...+.+.++.+.+..+|.+
T Consensus 145 -~~~~~l~~~l~~~~~~~~t 163 (194)
T cd03213 145 -SSALQVMSLLRRLADTGRT 163 (194)
T ss_pred -HHHHHHHHHHHHHHhCCCE
Confidence 3444555555555444544
No 115
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.61 E-value=1e-15 Score=148.11 Aligned_cols=157 Identities=20% Similarity=0.182 Sum_probs=119.8
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----cccccccCCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDD 114 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----~r~i~~~fq~ 114 (509)
.+++++.++...+++++||.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.+++.... .+.+++.+|+
T Consensus 14 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~q~ 90 (214)
T PRK13543 14 AHALAFSRNEEPVFGPLDFHVDAGE---ALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLGHL 90 (214)
T ss_pred EeeEEEecCCceeeecceEEECCCC---EEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEeecC
Confidence 4677777777789999999999999 99999999999999999999998 78999999987432 2347788888
Q ss_pred CCCCchhhHHHHHHhhcc--Cc-----------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 115 PRLTDYDTLLENIRGLKE--GK-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 115 p~~~d~~tl~e~L~~L~~--g~-----------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
+..++..++.+++..... +. .+.. +..+......|+|+.+++..+++++.++.+++.|||.+.+|.
T Consensus 91 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~ 170 (214)
T PRK13543 91 PGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDL 170 (214)
T ss_pred cccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 877777788888754321 10 0111 123444567889999999999999999999999999999998
Q ss_pred EEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 181 RVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 181 kIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
...+.+..+.+...+.|.+
T Consensus 171 -------~~~~~l~~~l~~~~~~~~t 189 (214)
T PRK13543 171 -------EGITLVNRMISAHLRGGGA 189 (214)
T ss_pred -------HHHHHHHHHHHHHHhCCCE
Confidence 3444555555554444433
No 116
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.61 E-value=1e-15 Score=147.13 Aligned_cols=147 Identities=12% Similarity=0.016 Sum_probs=116.8
Q ss_pred eeeeEEEeC----cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC----CeeEEEECCccCc------c
Q 010501 40 EDTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS------S 105 (509)
Q Consensus 40 ~~~lsf~~g----~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp----~~g~I~~D~y~~~------~ 105 (509)
.++++|.+. ...++++++|.+++|+ +++|+|+||||||||+++|+++++ ..|.|.+++.... .
T Consensus 6 ~~~~~~~~~~~~~~~~il~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 6 WRNISFTTGKGRSKIPILKDFSGVVKPGE---MVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred EEccEEEeccCCCCceeeeeEEEEECCCc---EEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 367777763 5689999999999999 999999999999999999999973 6899999987432 2
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEee
Q 010501 106 RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (509)
Q Consensus 106 r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd 185 (509)
+.+++++|++..++..++.+++....... .+......|+|+.+++..+++++.++.+++.|||...+|.
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~~~------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~----- 151 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALRCK------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDS----- 151 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhhhc------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCH-----
Confidence 35788999988888889999987533211 3334457789999999999999999999999999999997
Q ss_pred cCchHHHHHHHHHHHHH
Q 010501 186 GGVHFDLVKRVFRDIQR 202 (509)
Q Consensus 186 ~d~dirLiRRI~RD~~e 202 (509)
...+.+..+.+++.+
T Consensus 152 --~~~~~~~~~l~~~~~ 166 (202)
T cd03233 152 --STALEILKCIRTMAD 166 (202)
T ss_pred --HHHHHHHHHHHHHHH
Confidence 334445555555443
No 117
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=1.2e-15 Score=150.78 Aligned_cols=161 Identities=14% Similarity=0.157 Sum_probs=123.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc--------ccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~--------r~i~~ 110 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++..... ..+++
T Consensus 8 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 84 (255)
T PRK11300 8 VSGLMMRFGGLLAVNNVNLEVREQE---IVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVR 84 (255)
T ss_pred EeeEEEEECCEEEEEeeeeEEcCCe---EEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEE
Confidence 4678888877889999999999999 99999999999999999999998 789999999974321 23567
Q ss_pred cCCCCCCCchhhHHHHHHhhccC--------------------c----c-------eec-cccccCCCCcCCCeeeeecC
Q 010501 111 NFDDPRLTDYDTLLENIRGLKEG--------------------K----A-------VQV-PIYDFKSSSRIGYRTLEVPS 158 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~g--------------------~----~-------i~~-P~yD~~~~~rsgg~~~~v~~ 158 (509)
++|++..++..++.+++...... . . ... +..+...+..|+|+.+++..
T Consensus 85 ~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~l 164 (255)
T PRK11300 85 TFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEI 164 (255)
T ss_pred eccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHH
Confidence 89999888888999887642100 0 0 001 12233445678999999999
Q ss_pred ccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCHHHH
Q 010501 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEI 210 (509)
Q Consensus 159 a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~e~V 210 (509)
+++++.++.+++.|||...+|. ...+.+..+.+++.+. |.++.-+
T Consensus 165 a~al~~~p~llllDEPt~~LD~-------~~~~~l~~~L~~~~~~~~~tii~~ 210 (255)
T PRK11300 165 ARCMVTQPEILMLDEPAAGLNP-------KETKELDELIAELRNEHNVTVLLI 210 (255)
T ss_pred HHHHhcCCCEEEEcCCccCCCH-------HHHHHHHHHHHHHHhhcCCEEEEE
Confidence 9999999999999999999998 3455666666666543 6554333
No 118
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=7.1e-16 Score=155.46 Aligned_cols=164 Identities=13% Similarity=0.126 Sum_probs=126.1
Q ss_pred eeeeEEEeCc---EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc-------ccc
Q 010501 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RII 108 (509)
Q Consensus 40 ~~~lsf~~g~---~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~-------r~i 108 (509)
.+++++.++. ..+|+++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|..... +.+
T Consensus 7 ~~~l~~~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 7 VKNLTFKYKEDQEKYTLNDVSFHVKQGE---WLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred EEeEEEEcCCCCcCeeeeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 3667776642 469999999999999 99999999999999999999998 899999999985421 357
Q ss_pred cccCCCCC-CCchhhHHHHHHhhccCc----------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 109 DGNFDDPR-LTDYDTLLENIRGLKEGK----------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 109 ~~~fq~p~-~~d~~tl~e~L~~L~~g~----------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
+++||+|. .+...++.+++....... .+.. +..+...+..|+|+.+++..+++++.++.+++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLl 163 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIII 163 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 89999984 566678888886532100 0011 22344557789999999999999999999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCHHHHHHH
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIHQ 213 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~e~Vi~~ 213 (509)
.|||...+|. ...+.+.++.+++... |.++.-+.|+
T Consensus 164 LDEPt~~LD~-------~~~~~l~~~l~~l~~~~g~tilivtH~ 200 (279)
T PRK13650 164 LDEATSMLDP-------EGRLELIKTIKGIRDDYQMTVISITHD 200 (279)
T ss_pred EECCcccCCH-------HHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 9999999998 4566667777777653 7765444443
No 119
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.61 E-value=9.2e-16 Score=150.98 Aligned_cols=162 Identities=17% Similarity=0.215 Sum_probs=122.8
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~~ 111 (509)
.+++++.++...+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.++++
T Consensus 6 ~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 6 FKEVSYSSFGKEILKDISVKFEGGA---IYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred EEeEEEEeCCeeeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence 4577888877889999999999999 99999999999999999999998 78999999986432 2357889
Q ss_pred CCCCCCCchhhHHHHHHhhcc--Cc----------ceecc--ccccCCCCcCCCeeeeecCccEEEEecceeeeccccCC
Q 010501 112 FDDPRLTDYDTLLENIRGLKE--GK----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (509)
Q Consensus 112 fq~p~~~d~~tl~e~L~~L~~--g~----------~i~~P--~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~l 177 (509)
+|++..++ .++.+++..... +. ....+ ..+......|+|+.+++..+++++.++.+++.|||.+.
T Consensus 83 ~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 161 (241)
T PRK14250 83 FQQPHLFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSA 161 (241)
T ss_pred ecCchhch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 99988776 588888764211 10 01121 22344567899999999999999999999999999999
Q ss_pred CCeEEEeecCchHHHHHHHHHHHHH-cCCCHHHHHH
Q 010501 178 IDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIH 212 (509)
Q Consensus 178 LDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e~Vi~ 212 (509)
+|. ...+.+..+.+.+.+ .|.++.-+.|
T Consensus 162 LD~-------~~~~~l~~~l~~~~~~~g~tii~~sH 190 (241)
T PRK14250 162 LDP-------TSTEIIEELIVKLKNKMNLTVIWITH 190 (241)
T ss_pred CCH-------HHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 997 345555566666654 3665433333
No 120
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=7.5e-16 Score=154.92 Aligned_cols=163 Identities=13% Similarity=0.128 Sum_probs=125.1
Q ss_pred eeeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccccc
Q 010501 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~ 110 (509)
.+++++.++ ...+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.+++
T Consensus 7 ~~~l~~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 7 VEDLHFRYKDGTKALKGLSLSIPEGS---KTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred EEEEEEEeCCCCeeeeeEEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 467777774 4679999999999999 99999999999999999999998 78999999997432 135789
Q ss_pred cCCCCC-CCchhhHHHHHHhhcc--Cc--------------cee-ccccccCCCCcCCCeeeeecCccEEEEecceeeec
Q 010501 111 NFDDPR-LTDYDTLLENIRGLKE--GK--------------AVQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (509)
Q Consensus 111 ~fq~p~-~~d~~tl~e~L~~L~~--g~--------------~i~-~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d 172 (509)
+||+|. .+...++.+++..... +. .+. .+..+...+..|+|+.+++..+++++.++.+++.|
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllD 163 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLD 163 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 999874 3445688888864211 00 001 12345556788999999999999999999999999
Q ss_pred cccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 173 Elr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
||...+|. ...+.+..+.+++.++|.++.-+.|
T Consensus 164 EPt~~LD~-------~~~~~l~~~l~~~~~~g~tili~tH 196 (274)
T PRK13647 164 EPMAYLDP-------RGQETLMEILDRLHNQGKTVIVATH 196 (274)
T ss_pred CCCcCCCH-------HHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 99999998 4566677777777666766543333
No 121
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.61 E-value=1e-15 Score=155.06 Aligned_cols=164 Identities=15% Similarity=0.158 Sum_probs=124.6
Q ss_pred eeeeEEEeCc-----EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~-----~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------- 104 (509)
.+++++.++. ..+|++|||.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|....
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 5 IENLTHIYMEGTPFEKKALDNVNIEIEDGE---FVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEECCCCCccccceeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 4567776653 469999999999999 99999999999999999999998 78999999997532
Q ss_pred cccccccCCCCC-CCchhhHHHHHHhhcc--C--------------cceec---cccccCCCCcCCCeeeeecCccEEEE
Q 010501 105 SRIIDGNFDDPR-LTDYDTLLENIRGLKE--G--------------KAVQV---PIYDFKSSSRIGYRTLEVPSSRIVII 164 (509)
Q Consensus 105 ~r~i~~~fq~p~-~~d~~tl~e~L~~L~~--g--------------~~i~~---P~yD~~~~~rsgg~~~~v~~a~VLIV 164 (509)
.+.++++||+|. .+...++.+++..... + ..+.. ...+...+..|+|+.+++..+++++.
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~ 161 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAM 161 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHc
Confidence 135789999874 2334688888764211 1 01112 12455567789999999999999999
Q ss_pred ecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCHHHHHHH
Q 010501 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIHQ 213 (509)
Q Consensus 165 EGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~e~Vi~~ 213 (509)
++.+++.|||...+|. ...+.+..+.+++.+. |.++.-+.|.
T Consensus 162 ~P~llllDEPt~gLD~-------~~~~~l~~~l~~l~~~~g~tvi~vtHd 204 (287)
T PRK13637 162 EPKILILDEPTAGLDP-------KGRDEILNKIKELHKEYNMTIILVSHS 204 (287)
T ss_pred CCCEEEEECCccCCCH-------HHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 9999999999999998 4566777777777654 7765444443
No 122
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.60 E-value=8.5e-16 Score=150.39 Aligned_cols=158 Identities=13% Similarity=0.090 Sum_probs=122.0
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------cccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~~ 110 (509)
.+++++.++...+++++||.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.+++.... .+.+++
T Consensus 8 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 84 (237)
T PRK11614 8 FDKVSAHYGKIQALHEVSLHINQGE---IVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAI 84 (237)
T ss_pred EEeEEEeeCCceeeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEE
Confidence 4677887777889999999999999 99999999999999999999998 78999999987432 134788
Q ss_pred cCCCCCCCchhhHHHHHHhhcc---Ccc-----------e-ec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccc
Q 010501 111 NFDDPRLTDYDTLLENIRGLKE---GKA-----------V-QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~---g~~-----------i-~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dEl 174 (509)
++|++..++..++.+++..... ... + .. ...+...+..|+|+.+++..+++++.++.+++.|||
T Consensus 85 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEP 164 (237)
T PRK11614 85 VPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEP 164 (237)
T ss_pred eccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCc
Confidence 9999888887788888764211 000 0 00 112334456789999999999999999999999999
Q ss_pred cCCCCeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 175 r~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
...+|. ...+.+..+.+++.+.|.++
T Consensus 165 t~~LD~-------~~~~~l~~~l~~~~~~~~ti 190 (237)
T PRK11614 165 SLGLAP-------IIIQQIFDTIEQLREQGMTI 190 (237)
T ss_pred cccCCH-------HHHHHHHHHHHHHHHCCCEE
Confidence 999997 34555566666665556554
No 123
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.60 E-value=1.5e-15 Score=151.13 Aligned_cols=158 Identities=18% Similarity=0.183 Sum_probs=121.9
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~~ 111 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.++++
T Consensus 5 ~~~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 5 ARNLSVRLGGRTLLDDVSLTLRPGE---VVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred EEeEEEEeCCeeeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 4678888887889999999999999 99999999999999999999998 78999999987432 1347889
Q ss_pred CCCCCCCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEE------Eecce
Q 010501 112 FDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVI------IEGIY 168 (509)
Q Consensus 112 fq~p~~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLI------VEGi~ 168 (509)
+|++..++..++.+++..... +. .+.. ...+......|+|+.+++..+++++ .++.+
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~l 161 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRW 161 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCE
Confidence 999877666788888765221 00 0111 1234455678999999999999999 48999
Q ss_pred eeeccccCCCCeEEEeecCchHHHHHHHHHHHH-HcCCCH
Q 010501 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ-RVGQEP 207 (509)
Q Consensus 169 aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~-erG~t~ 207 (509)
++.|||...+|. .....+..+.+++. ..|.++
T Consensus 162 llLDEPt~~LD~-------~~~~~l~~~l~~~~~~~~~ti 194 (258)
T PRK13548 162 LLLDEPTSALDL-------AHQHHVLRLARQLAHERGLAV 194 (258)
T ss_pred EEEeCCcccCCH-------HHHHHHHHHHHHHHHhcCCEE
Confidence 999999999998 34555666666665 456553
No 124
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.60 E-value=3.6e-16 Score=148.73 Aligned_cols=163 Identities=21% Similarity=0.234 Sum_probs=128.0
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---------------
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------------- 104 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------------- 104 (509)
.++...+|.+.+|++|||....|+ +|.|+|.||||||||++||.-+- |..|.|..++....
T Consensus 10 ~dlHK~~G~~eVLKGvSL~A~~Gd---VisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~ 86 (256)
T COG4598 10 EDLHKRYGEHEVLKGVSLQANAGD---VISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKR 86 (256)
T ss_pred hHHHhhcccchhhcceeeecCCCC---EEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHH
Confidence 445556789999999999999999 99999999999999999997655 89999999886311
Q ss_pred -----cccccccCCCCCCCchhhHHHHHHhh-----ccC--cce--------ecc---ccccCCCCcCCCeeeeecCccE
Q 010501 105 -----SRIIDGNFDDPRLTDYDTLLENIRGL-----KEG--KAV--------QVP---IYDFKSSSRIGYRTLEVPSSRI 161 (509)
Q Consensus 105 -----~r~i~~~fq~p~~~d~~tl~e~L~~L-----~~g--~~i--------~~P---~yD~~~~~rsgg~~~~v~~a~V 161 (509)
+..++++||+.++|.++++.+|+-.. ... ..+ .+- .-+..+...|||+.+++++++.
T Consensus 87 q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIARa 166 (256)
T COG4598 87 QLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIARA 166 (256)
T ss_pred HHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHHHH
Confidence 02468999999999999999997431 110 000 011 1223345678999999999999
Q ss_pred EEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHH
Q 010501 162 VIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (509)
Q Consensus 162 LIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~ 213 (509)
|.+|+..+|.|||++.+|. +-+--.-++.||+.+.|+|+.-|.|.
T Consensus 167 LameP~vmLFDEPTSALDP-------ElVgEVLkv~~~LAeEgrTMv~VTHE 211 (256)
T COG4598 167 LAMEPEVMLFDEPTSALDP-------ELVGEVLKVMQDLAEEGRTMVVVTHE 211 (256)
T ss_pred HhcCCceEeecCCcccCCH-------HHHHHHHHHHHHHHHhCCeEEEEeee
Confidence 9999999999999999997 33455678999999999997666554
No 125
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.60 E-value=1.4e-15 Score=147.61 Aligned_cols=158 Identities=18% Similarity=0.189 Sum_probs=122.0
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---cccccccCCCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---SRIIDGNFDDP 115 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---~r~i~~~fq~p 115 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.+++.... .+.+++.+|++
T Consensus 3 l~~v~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~ 79 (223)
T TIGR03740 3 TKNLSKRFGKQTAVNNISLTVPKNS---VYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP 79 (223)
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC
Confidence 3567777777889999999999999 99999999999999999999998 78999999886432 13578899998
Q ss_pred CCCchhhHHHHHHhhcc--Cc---c-------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEE
Q 010501 116 RLTDYDTLLENIRGLKE--GK---A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRV 182 (509)
Q Consensus 116 ~~~d~~tl~e~L~~L~~--g~---~-------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkI 182 (509)
..++..++.+++..... +. . ... +..+......|+|+.+++..+++++.++.+++.|||...+|.
T Consensus 80 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~-- 157 (223)
T TIGR03740 80 PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP-- 157 (223)
T ss_pred CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCH--
Confidence 88877788888754211 10 0 111 122334456789999999999999999999999999999998
Q ss_pred EeecCchHHHHHHHHHHHHHcCCCH
Q 010501 183 SVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 183 fVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
...+.+..+.+++...|.++
T Consensus 158 -----~~~~~l~~~L~~~~~~~~ti 177 (223)
T TIGR03740 158 -----IGIQELRELIRSFPEQGITV 177 (223)
T ss_pred -----HHHHHHHHHHHHHHHCCCEE
Confidence 34556666666665556553
No 126
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.60 E-value=9.3e-16 Score=166.72 Aligned_cols=163 Identities=14% Similarity=0.067 Sum_probs=129.7
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc--------ccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~--------r~i~~ 110 (509)
.+++++.++...+++++||.+++|+ +++|+||||||||||+++|++++ |..|.|.+++..... ..+++
T Consensus 14 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 90 (510)
T PRK15439 14 ARSISKQYSGVEVLKGIDFTLHAGE---VHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYL 90 (510)
T ss_pred EEeEEEEeCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 4678888888889999999999999 99999999999999999999998 789999999864321 24789
Q ss_pred cCCCCCCCchhhHHHHHHhhccCc------------ceecc-ccccCCCCcCCCeeeeecCccEEEEecceeeeccccCC
Q 010501 111 NFDDPRLTDYDTLLENIRGLKEGK------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~g~------------~i~~P-~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~l 177 (509)
++|++..++..++.+++....... .+... ..+...+..|+|+.+++..+++++.++.++++|||.+.
T Consensus 91 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~ 170 (510)
T PRK15439 91 VPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTAS 170 (510)
T ss_pred EeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCC
Confidence 999998888889999886532110 01111 23455577899999999999999999999999999999
Q ss_pred CCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 178 IDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 178 LDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
+|. .....+..+.+++.+.|.++.-+.|
T Consensus 171 LD~-------~~~~~l~~~l~~~~~~g~tiiivtH 198 (510)
T PRK15439 171 LTP-------AETERLFSRIRELLAQGVGIVFISH 198 (510)
T ss_pred CCH-------HHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 998 4566677777777777776543333
No 127
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.60 E-value=1.9e-15 Score=142.70 Aligned_cols=138 Identities=20% Similarity=0.206 Sum_probs=110.4
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------ccccccc
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~~~ 111 (509)
+++++.+ +++++++.+++|+ +++|+|+||||||||+++|++.+ |..|.|.+++.... .+.++++
T Consensus 8 ~~l~~~~----~l~~vs~~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (182)
T cd03215 8 RGLSVKG----AVRDVSFEVRAGE---IVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYV 80 (182)
T ss_pred eccEEEe----eecceEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEe
Confidence 3455544 8999999999999 99999999999999999999998 78999999986432 1357888
Q ss_pred CCCC---CCCchhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCc
Q 010501 112 FDDP---RLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGV 188 (509)
Q Consensus 112 fq~p---~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~ 188 (509)
+|++ ..++..++.+++..... .|+|+.+++..+++++.++.+++.|||...+|. .
T Consensus 81 ~q~~~~~~~~~~~t~~e~l~~~~~---------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~-------~ 138 (182)
T cd03215 81 PEDRKREGLVLDLSVAENIALSSL---------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDV-------G 138 (182)
T ss_pred cCCcccCcccCCCcHHHHHHHHhh---------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCH-------H
Confidence 9885 35666789998865321 788899999999999999999999999999998 3
Q ss_pred hHHHHHHHHHHHHHcCCCH
Q 010501 189 HFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 189 dirLiRRI~RD~~erG~t~ 207 (509)
..+.+..+.+++.+.|.++
T Consensus 139 ~~~~l~~~l~~~~~~~~ti 157 (182)
T cd03215 139 AKAEIYRLIRELADAGKAV 157 (182)
T ss_pred HHHHHHHHHHHHHHCCCEE
Confidence 4555566666655555543
No 128
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=99.60 E-value=1.7e-15 Score=149.28 Aligned_cols=152 Identities=16% Similarity=0.194 Sum_probs=117.6
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CC-----eeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~-----~g~I~~D~y~~~--------- 104 (509)
.+++++.++...+++++||.+++|+ +++|+|+||||||||+++|++++ |. .|.|.+++....
T Consensus 4 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 4 IENLNLFYGEKEALKNINLDIPKNQ---VTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEECCeeeecceeEEECCCC---EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 3677888877789999999999999 99999999999999999999998 56 899999987432
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--C----cc-----------eec-----cccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G----KA-----------VQV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g----~~-----------i~~-----P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++..++ .++.+++..... + .. +.. ...+...+..|+|+.+++..++++
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral 159 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARAL 159 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 135788999988887 888888764211 1 00 011 123444567899999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR 202 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e 202 (509)
+.++.+++.|||...+|. .....+.++.+++.+
T Consensus 160 ~~~p~llllDEPt~~LD~-------~~~~~l~~~l~~~~~ 192 (247)
T TIGR00972 160 AVEPEVLLLDEPTSALDP-------IATGKIEELIQELKK 192 (247)
T ss_pred hcCCCEEEEeCCcccCCH-------HHHHHHHHHHHHHHh
Confidence 999999999999999997 334444555555433
No 129
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.60 E-value=1.8e-15 Score=148.34 Aligned_cols=152 Identities=14% Similarity=0.132 Sum_probs=118.3
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------cccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~~ 110 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.+++.... .+.+++
T Consensus 5 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 5 LEGLSVSFDGFKALNDLSLYVDPGE---LRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred EEeeEEEcCCeEEeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 4677887777789999999999999 99999999999999999999998 78999999997432 124788
Q ss_pred cCCCCCCCchhhHHHHHHhhccC-------------c-----------ceec-cccccCCCCcCCCeeeeecCccEEEEe
Q 010501 111 NFDDPRLTDYDTLLENIRGLKEG-------------K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIE 165 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~g-------------~-----------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVE 165 (509)
.+|++..++..++.+++...... . .+.. +..+......|+|+.+++..+++++.+
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~ 161 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQD 161 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 99999888888888887653110 0 0001 122344456789999999999999999
Q ss_pred cceeeeccccCCCCeEEEeecCchHHHHHHHHHHHH
Q 010501 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ 201 (509)
Q Consensus 166 Gi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~ 201 (509)
+.+++.|||...+|. ...+.+..+.+++.
T Consensus 162 p~~lllDEPt~~LD~-------~~~~~l~~~l~~~~ 190 (242)
T TIGR03411 162 PKLLLLDEPVAGMTD-------EETEKTAELLKSLA 190 (242)
T ss_pred CCEEEecCCccCCCH-------HHHHHHHHHHHHHh
Confidence 999999999999998 34445555555543
No 130
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.60 E-value=1.2e-15 Score=148.82 Aligned_cols=156 Identities=15% Similarity=0.190 Sum_probs=119.2
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~~ 111 (509)
.+++++.++...+++++||.+++|+ +++|+||||||||||+++|+++. |..|.|.+++.... .+.++++
T Consensus 10 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 86 (225)
T PRK10247 10 LQNVGYLAGDAKILNNISFSLRAGE---FKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYC 86 (225)
T ss_pred EeccEEeeCCceeeeccEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEE
Confidence 4677787777789999999999999 99999999999999999999998 78999999986432 2357889
Q ss_pred CCCCCCCchhhHHHHHHhhc---cCc-----------ceecc--ccccCCCCcCCCeeeeecCccEEEEecceeeecccc
Q 010501 112 FDDPRLTDYDTLLENIRGLK---EGK-----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (509)
Q Consensus 112 fq~p~~~d~~tl~e~L~~L~---~g~-----------~i~~P--~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr 175 (509)
+|++..++ .++.+++.... ... .+..+ ..+......|+|+.+++..+++++.++.+++.|||.
T Consensus 87 ~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt 165 (225)
T PRK10247 87 AQTPTLFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEIT 165 (225)
T ss_pred eccccccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence 99988776 48888875321 000 01111 224445678889999999999999999999999999
Q ss_pred CCCCeEEEeecCchHHHHHHHHHHHHH-cCCC
Q 010501 176 PLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQE 206 (509)
Q Consensus 176 ~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t 206 (509)
..+|. ...+.+..+.+++.. +|.+
T Consensus 166 ~~LD~-------~~~~~l~~~l~~~~~~~~~t 190 (225)
T PRK10247 166 SALDE-------SNKHNVNEIIHRYVREQNIA 190 (225)
T ss_pred ccCCH-------HHHHHHHHHHHHHHHhcCCE
Confidence 99997 345555666655543 3544
No 131
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.60 E-value=2.2e-15 Score=148.58 Aligned_cols=138 Identities=17% Similarity=0.179 Sum_probs=111.1
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccCc-------cc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS-------SR 106 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp------~~g~I~~D~y~~~-------~r 106 (509)
.+++++.++...+++++||.+++|+ +++|+|+||||||||+++|++.++ ..|.|.++|.... .+
T Consensus 6 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14247 6 IRDLKVSFGQVEVLDGVNLEIPDNT---ITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRR 82 (250)
T ss_pred EEeeEEEECCeeeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhc
Confidence 4667777777789999999999999 999999999999999999999983 5899999987432 13
Q ss_pred cccccCCCCCCCchhhHHHHHHhhcc--C-----c----c-------eec-----cccccCCCCcCCCeeeeecCccEEE
Q 010501 107 IIDGNFDDPRLTDYDTLLENIRGLKE--G-----K----A-------VQV-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (509)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~e~L~~L~~--g-----~----~-------i~~-----P~yD~~~~~rsgg~~~~v~~a~VLI 163 (509)
.+++++|++..+...++.+++..... + . . +.. ...+......|+|+.+++..+++++
T Consensus 83 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 162 (250)
T PRK14247 83 RVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALA 162 (250)
T ss_pred cEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 57899999987878889999864211 0 0 0 011 1234445678999999999999999
Q ss_pred EecceeeeccccCCCCe
Q 010501 164 IEGIYALSEKLRPLIDL 180 (509)
Q Consensus 164 VEGi~aL~dElr~lLDl 180 (509)
.++.+++.|||...+|.
T Consensus 163 ~~p~lllLDEP~~~LD~ 179 (250)
T PRK14247 163 FQPEVLLADEPTANLDP 179 (250)
T ss_pred cCCCEEEEcCCCccCCH
Confidence 99999999999999997
No 132
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.60 E-value=6.4e-16 Score=148.65 Aligned_cols=138 Identities=20% Similarity=0.156 Sum_probs=113.3
Q ss_pred eeeeEEEeCcEE--EeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--cccccccCCC
Q 010501 40 EDTLSFEKGFFI--VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDD 114 (509)
Q Consensus 40 ~~~lsf~~g~~~--iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--~r~i~~~fq~ 114 (509)
.++++.+|.... +++++|+.+.+|+ .+.+.||||||||||++.++++. |..|.|.+++.... ...-+.+||+
T Consensus 6 ~~~~sl~y~g~~~~~le~vsL~ia~ge---~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ~ 82 (259)
T COG4525 6 VSHLSLSYEGKPRSALEDVSLTIASGE---LVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQN 82 (259)
T ss_pred hhheEEecCCcchhhhhccceeecCCC---EEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEecc
Confidence 456666666555 9999999999999 99999999999999999999999 89999999987543 2345789999
Q ss_pred CCCCchhhHHHHHHhhccCc----------------ceecccccc-CCCCcCCCeeeeecCccEEEEecceeeeccccCC
Q 010501 115 PRLTDYDTLLENIRGLKEGK----------------AVQVPIYDF-KSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (509)
Q Consensus 115 p~~~d~~tl~e~L~~L~~g~----------------~i~~P~yD~-~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~l 177 (509)
+.+++|.++.+|+.+-..-. .+....|++ ...+.|||+.|++..++++.+|+.++|+|||...
T Consensus 83 ~~LlPWl~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgA 162 (259)
T COG4525 83 EALLPWLNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGA 162 (259)
T ss_pred CccchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhh
Confidence 99999999999998743211 122223332 2347899999999999999999999999999999
Q ss_pred CCe
Q 010501 178 IDL 180 (509)
Q Consensus 178 LDl 180 (509)
+|.
T Consensus 163 lDa 165 (259)
T COG4525 163 LDA 165 (259)
T ss_pred HHH
Confidence 986
No 133
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.59 E-value=1.6e-15 Score=145.86 Aligned_cols=137 Identities=20% Similarity=0.146 Sum_probs=110.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc------cccccccC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~------~r~i~~~f 112 (509)
.+++++.++...+++++||.+++ + +++|+||||||||||+++|++++ |..|.|.+++.... .+.+++++
T Consensus 3 ~~~~~~~~~~~~~l~~vs~~i~~-g---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~ 78 (211)
T cd03264 3 LENLTKRYGKKRALDGVSLTLGP-G---MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLP 78 (211)
T ss_pred EEEEEEEECCEEEEcceeEEEcC-C---cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEec
Confidence 35788888778899999999998 4 88999999999999999999998 78999999987432 23578899
Q ss_pred CCCCCCchhhHHHHHHhhcc--C---c-----------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeecccc
Q 010501 113 DDPRLTDYDTLLENIRGLKE--G---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (509)
Q Consensus 113 q~p~~~d~~tl~e~L~~L~~--g---~-----------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr 175 (509)
|++..++..++.+++..... + . .... +..+......|+|+.+++..+++++.++.+++.|||.
T Consensus 79 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt 158 (211)
T cd03264 79 QEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPT 158 (211)
T ss_pred CCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 99988887888888764210 0 0 0111 1234455678999999999999999999999999999
Q ss_pred CCCCe
Q 010501 176 PLIDL 180 (509)
Q Consensus 176 ~lLDl 180 (509)
..+|.
T Consensus 159 ~~LD~ 163 (211)
T cd03264 159 AGLDP 163 (211)
T ss_pred ccCCH
Confidence 99997
No 134
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.59 E-value=1.8e-15 Score=149.51 Aligned_cols=158 Identities=17% Similarity=0.175 Sum_probs=121.0
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------------- 104 (509)
.+++++.++...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++....
T Consensus 3 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 3 FSDVTKRFGILTVLDGLNFSVAAGE---KVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred EEEEEEEeCCeeEEeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 4678888887889999999999999 99999999999999999999998 78999999986321
Q ss_pred ------cccccccCCCCCCCchhhHHHHHHhhc---cCc--------------ceec-cccccCCCCcCCCeeeeecCcc
Q 010501 105 ------SRIIDGNFDDPRLTDYDTLLENIRGLK---EGK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSR 160 (509)
Q Consensus 105 ------~r~i~~~fq~p~~~d~~tl~e~L~~L~---~g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~ 160 (509)
.+.+++++|++..++..++.+++.... .+. .+.. +..+......|+|+.+++..++
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~lar 159 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIAR 159 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHH
Confidence 235788999988887788888876421 000 0011 1223344568899999999999
Q ss_pred EEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCH
Q 010501 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (509)
Q Consensus 161 VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~ 207 (509)
+++.++.+++.|||...+|. .....+..+.+++.. .|.++
T Consensus 160 al~~~p~llllDEP~~~LD~-------~~~~~l~~~l~~~~~~~~~ti 200 (252)
T TIGR03005 160 ALAMRPKVMLFDEVTSALDP-------ELVGEVLNVIRRLASEHDLTM 200 (252)
T ss_pred HHHcCCCEEEEeCCcccCCH-------HHHHHHHHHHHHHHHhcCcEE
Confidence 99999999999999999997 344455555555544 35543
No 135
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=99.59 E-value=2.2e-15 Score=148.84 Aligned_cols=155 Identities=18% Similarity=0.211 Sum_probs=117.8
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC------CCeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll------p~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|+++. |..|.|.+++....
T Consensus 9 ~~~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 85 (253)
T PRK14242 9 ARGLSFFYGDFQALHDISLEFEQNQ---VTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVEL 85 (253)
T ss_pred EeeeEEEECCeeeecceeEEEeCCC---EEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHH
Confidence 4677888877789999999999999 99999999999999999999985 36899999986432
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--Cc----c-----------eec-----cccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK----A-----------VQV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g~----~-----------i~~-----P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++..++ .++.+++..... +. . ... ...+......|+|+.+++..++++
T Consensus 86 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 164 (253)
T PRK14242 86 RRRVGMVFQKPNPFP-KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARAL 164 (253)
T ss_pred hhcEEEEecCCCCCc-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHH
Confidence 135788999988777 488888864211 10 0 001 012344567899999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
+.++.+++.|||...+|. .....+.++.+++.. |.+
T Consensus 165 ~~~p~llllDEPt~~LD~-------~~~~~l~~~l~~~~~-~~t 200 (253)
T PRK14242 165 AVEPEVLLMDEPASALDP-------IATQKIEELIHELKA-RYT 200 (253)
T ss_pred hcCCCEEEEeCCcccCCH-------HHHHHHHHHHHHHhc-CCe
Confidence 999999999999999997 344455555555532 444
No 136
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=99.59 E-value=1.6e-15 Score=150.87 Aligned_cols=161 Identities=18% Similarity=0.178 Sum_probs=124.2
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CC---eeEEEECCccCc-----------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDS----------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~---~g~I~~D~y~~~----------- 104 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|++.+ |. .|.|.++|....
T Consensus 7 ~~nl~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (262)
T PRK09984 7 VEKLAKTFNQHQALHAVDLNIHHGE---MVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRK 83 (262)
T ss_pred EeeEEEEeCCeEEEecceEEEcCCc---EEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHH
Confidence 4678888888889999999999999 99999999999999999999998 43 499999996431
Q ss_pred -cccccccCCCCCCCchhhHHHHHHhhccC-------------c-----------ceec-cccccCCCCcCCCeeeeecC
Q 010501 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKEG-------------K-----------AVQV-PIYDFKSSSRIGYRTLEVPS 158 (509)
Q Consensus 105 -~r~i~~~fq~p~~~d~~tl~e~L~~L~~g-------------~-----------~i~~-P~yD~~~~~rsgg~~~~v~~ 158 (509)
.+.+++++|++..++..++.+++...... . .... ...+...+..|+|+.+++..
T Consensus 84 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~l 163 (262)
T PRK09984 84 SRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAI 163 (262)
T ss_pred HHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHH
Confidence 12478899999888878888888642110 0 0111 12344556789999999999
Q ss_pred ccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCHHHH
Q 010501 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEI 210 (509)
Q Consensus 159 a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e~V 210 (509)
+++++.++.+++.|||...+|. ...+.+..+++++.+ .|.++.-+
T Consensus 164 aral~~~p~llllDEPt~~LD~-------~~~~~l~~~l~~~~~~~g~tvii~ 209 (262)
T PRK09984 164 ARALMQQAKVILADEPIASLDP-------ESARIVMDTLRDINQNDGITVVVT 209 (262)
T ss_pred HHHHhcCCCEEEecCccccCCH-------HHHHHHHHHHHHHHHhcCCEEEEE
Confidence 9999999999999999999998 455666666666654 46654333
No 137
>PRK08233 hypothetical protein; Provisional
Probab=99.59 E-value=2.2e-14 Score=133.42 Aligned_cols=151 Identities=19% Similarity=0.284 Sum_probs=107.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCccc--cccccCCCC---CCCchhhHHHHHHhhccCcceeccc
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR--IIDGNFDDP---RLTDYDTLLENIRGLKEGKAVQVPI 140 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~r--~i~~~fq~p---~~~d~~tl~e~L~~L~~g~~i~~P~ 140 (509)
+.+|+|.|++|||||||++.|++.++....+++|+++.... ......+.. ..++...+.+.+..+.++.
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 76 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKS------ 76 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCC------
Confidence 46999999999999999999999997677888998853211 110000111 2233334444443332110
Q ss_pred cccCCCCcCCCeeeeecCccEEEEecceeee-ccccCCCCeEEEeecCchHHHHHHHHHHHHHcC-CCHHHHHHHHHHhh
Q 010501 141 YDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVG-QEPEEIIHQISETV 218 (509)
Q Consensus 141 yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~-dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG-~t~e~Vi~~y~~~V 218 (509)
..+++|+||.+... +++...+|+.||++++.++++.|++.|+..... ......+..|...+
T Consensus 77 -----------------~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 139 (182)
T PRK08233 77 -----------------NVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYA 139 (182)
T ss_pred -----------------CceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence 12678899987654 688889999999999999999999988865432 24556678888999
Q ss_pred hhHHHHhhcCCCCceeEEEcC
Q 010501 219 YPMYKAFIEPDLQTAHIKIIN 239 (509)
Q Consensus 219 ~P~~~~fIeP~k~~ADIII~n 239 (509)
+|.|..++.+....|+++|.+
T Consensus 140 ~~~y~~~~~~~~~~~~~vId~ 160 (182)
T PRK08233 140 RPLYLEALHTVKPNADIVLDG 160 (182)
T ss_pred HHHHHHHhhcCccCCeEEEcC
Confidence 999999999888889998853
No 138
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.59 E-value=1.1e-15 Score=143.79 Aligned_cols=119 Identities=23% Similarity=0.264 Sum_probs=101.8
Q ss_pred eeeEEEeCcE--EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc------ccccccc
Q 010501 41 DTLSFEKGFF--IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGN 111 (509)
Q Consensus 41 ~~lsf~~g~~--~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~------~r~i~~~ 111 (509)
+++++.++.. .++++++|.+++|+ +++|+|+||||||||+++|+++. |..|.|.+++.... .+.++++
T Consensus 4 ~~~~~~~~~~~~~~l~~i~~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 4 NNVSFSYPEQEQQVLKNLSLELKQGE---KIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred EEEEEEeCCCCccceEEEEEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 5667766543 69999999999999 99999999999999999999998 78999999986421 2357889
Q ss_pred CCCCCCCchhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 112 FDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 112 fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
+|++..++ .++.+++ ....|+|+.+++..+++++.++.+++.|||...+|.
T Consensus 81 ~q~~~~~~-~tv~~~i-----------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~ 131 (178)
T cd03247 81 NQRPYLFD-TTLRNNL-----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDP 131 (178)
T ss_pred ccCCeeec-ccHHHhh-----------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 99987765 5777776 356788999999999999999999999999999997
No 139
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=1.3e-15 Score=154.11 Aligned_cols=164 Identities=14% Similarity=0.154 Sum_probs=123.8
Q ss_pred eeeeEEEeCc-----EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~-----~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------- 104 (509)
.+++++.++. ..+|++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+||....
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 5 FDNVSYTYQKGTPYEHQAIHDVNTEFEQGK---YYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEECCCCccccCceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 3567777642 469999999999999 99999999999999999999998 78999999997531
Q ss_pred --cccccccCCCCC-CCchhhHHHHHHhhcc--Cc--------------ceec--cccccCCCCcCCCeeeeecCccEEE
Q 010501 105 --SRIIDGNFDDPR-LTDYDTLLENIRGLKE--GK--------------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVI 163 (509)
Q Consensus 105 --~r~i~~~fq~p~-~~d~~tl~e~L~~L~~--g~--------------~i~~--P~yD~~~~~rsgg~~~~v~~a~VLI 163 (509)
++.++++||+|. .+...++.+++..... +. .+.. +..+......|+|+.+++..+++++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~ 161 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA 161 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 235789999873 3333588888864211 10 1111 1234445678999999999999999
Q ss_pred EecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCHHHHHHH
Q 010501 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQ 213 (509)
Q Consensus 164 VEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e~Vi~~ 213 (509)
.++.+++.|||...+|. ...+.+..+.+++.. .|.++.-+.|.
T Consensus 162 ~~p~illlDEPt~~LD~-------~~~~~l~~~l~~l~~~~g~tvl~vtH~ 205 (286)
T PRK13646 162 MNPDIIVLDEPTAGLDP-------QSKRQVMRLLKSLQTDENKTIILVSHD 205 (286)
T ss_pred hCCCEEEEECCcccCCH-------HHHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 99999999999999998 456677777777764 47765444443
No 140
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.59 E-value=2e-15 Score=144.74 Aligned_cols=145 Identities=15% Similarity=0.166 Sum_probs=115.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhh--C-CCeeEEEECCccCc--------cccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDS--------SRII 108 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~l--l-p~~g~I~~D~y~~~--------~r~i 108 (509)
.+++++.++...+++++||.+.+|+ +++|+|+||||||||+++|++. + |..|.|.+|+.... ...+
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 3 IKDLHVSVGGKEILKGVNLTIKKGE---VHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred EEEEEEEeCCEEeeeccceEECCCc---EEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 3567777777789999999999999 9999999999999999999998 3 78999999987432 1237
Q ss_pred cccCCCCCCCchhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCc
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGV 188 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~ 188 (509)
++++|++..++..++.+++.. .....|+|+.+++..+++++.++.+++.|||...+|. .
T Consensus 80 ~~v~q~~~~~~~~~~~~~l~~--------------~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~-------~ 138 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFLRY--------------VNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDI-------D 138 (200)
T ss_pred EEeecChhhccCccHHHHHhh--------------ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH-------H
Confidence 789999888777777776611 1246888999999999999999999999999999997 3
Q ss_pred hHHHHHHHHHHHHHcCCCHH
Q 010501 189 HFDLVKRVFRDIQRVGQEPE 208 (509)
Q Consensus 189 dirLiRRI~RD~~erG~t~e 208 (509)
..+.+..+.+++.+.|.++.
T Consensus 139 ~~~~l~~~L~~~~~~~~tii 158 (200)
T cd03217 139 ALRLVAEVINKLREEGKSVL 158 (200)
T ss_pred HHHHHHHHHHHHHHCCCEEE
Confidence 44555555555555555543
No 141
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.59 E-value=8.5e-16 Score=145.54 Aligned_cols=147 Identities=16% Similarity=0.178 Sum_probs=108.6
Q ss_pred CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---------cccccccCCCCC-
Q 010501 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIIDGNFDDPR- 116 (509)
Q Consensus 48 g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---------~r~i~~~fq~p~- 116 (509)
+...+++++||.+.+|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+.+++++|++.
T Consensus 3 ~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 79 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGE---VLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDD 79 (190)
T ss_pred CccceecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhh
Confidence 34568999999999999 99999999999999999999998 78999999986431 134688999873
Q ss_pred CCchhhHHHHHHhhcc--C---c-----------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCC
Q 010501 117 LTDYDTLLENIRGLKE--G---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (509)
Q Consensus 117 ~~d~~tl~e~L~~L~~--g---~-----------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLD 179 (509)
.+...++.+++..... + . .+.. +..+......|+|+.+++..+++++.++.+++.|||...+|
T Consensus 80 ~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD 159 (190)
T TIGR01166 80 QLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLD 159 (190)
T ss_pred ccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 2233577888754210 0 0 0111 22344556788999999999999999999999999999999
Q ss_pred eEEEeecCchHHHHHHHHHHHHHcC
Q 010501 180 LRVSVTGGVHFDLVKRVFRDIQRVG 204 (509)
Q Consensus 180 lkIfVd~d~dirLiRRI~RD~~erG 204 (509)
. ...+.+..+.+++.+.|
T Consensus 160 ~-------~~~~~~~~~l~~~~~~~ 177 (190)
T TIGR01166 160 P-------AGREQMLAILRRLRAEG 177 (190)
T ss_pred H-------HHHHHHHHHHHHHHHcC
Confidence 7 33444444444444334
No 142
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=1.2e-15 Score=156.14 Aligned_cols=163 Identities=14% Similarity=0.151 Sum_probs=123.3
Q ss_pred eeeeEEEeCc-----EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccC----------
Q 010501 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND---------- 103 (509)
Q Consensus 40 ~~~lsf~~g~-----~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~---------- 103 (509)
.+++++.++. ..+|+++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++...
T Consensus 5 ~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge---~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 5 VKNIVKIFNKKLPTELKALDNVSVEINQGE---FIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEECCCCCccccceeeeEEEEeCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 4677777753 269999999999999 99999999999999999999998 7899999986531
Q ss_pred ---------------------ccccccccCCCCC-CCchhhHHHHHHhhcc--Cc--------------ceec--ccccc
Q 010501 104 ---------------------SSRIIDGNFDDPR-LTDYDTLLENIRGLKE--GK--------------AVQV--PIYDF 143 (509)
Q Consensus 104 ---------------------~~r~i~~~fq~p~-~~d~~tl~e~L~~L~~--g~--------------~i~~--P~yD~ 143 (509)
..+.++++||+|. .+...++.+++.+... +. .+.. ...+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~ 161 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQR 161 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 0234789999873 3445688888864221 10 1112 12455
Q ss_pred CCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 144 KSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 144 ~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
.....|+|+.+++..+++++.++.+++.|||...+|. ...+.+..+.+++.+.|.++.-+.|
T Consensus 162 ~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~-------~~~~~l~~~l~~l~~~g~tiiivtH 223 (305)
T PRK13651 162 SPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDP-------QGVKEILEIFDNLNKQGKTIILVTH 223 (305)
T ss_pred ChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH-------HHHHHHHHHHHHHHHCCCEEEEEee
Confidence 5677899999999999999999999999999999998 3556667777777766776543333
No 143
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=1.5e-15 Score=153.70 Aligned_cols=163 Identities=15% Similarity=0.182 Sum_probs=123.1
Q ss_pred eeeeEEEeCc-----EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~-----~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------- 104 (509)
.+++++.++. ..++++++|.+.+|+ +++|+||||||||||+++|++++ |..|.|.+++....
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 5 FENVDYIYSPGTPMEKKGLDNISFELEEGS---FVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEcCCCCCccccceeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4677777753 469999999999999 99999999999999999999998 78999999997431
Q ss_pred --cccccccCCCCC-CCchhhHHHHHHhhcc--Cc--------------ceec--cccccCCCCcCCCeeeeecCccEEE
Q 010501 105 --SRIIDGNFDDPR-LTDYDTLLENIRGLKE--GK--------------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVI 163 (509)
Q Consensus 105 --~r~i~~~fq~p~-~~d~~tl~e~L~~L~~--g~--------------~i~~--P~yD~~~~~rsgg~~~~v~~a~VLI 163 (509)
.+.+++++|+|. .+...++.+++..... +. .+.. ...+......|+|+.+++..+++++
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~ 161 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMA 161 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHH
Confidence 124788999873 2334688888754211 10 0111 1234455678999999999999999
Q ss_pred EecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 164 VEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
.++.+++.|||...+|. ...+.+.++.+.+.+.|.++.-+.|
T Consensus 162 ~~p~lLlLDEPt~gLD~-------~~~~~l~~~l~~l~~~g~tvlivsH 203 (287)
T PRK13641 162 YEPEILCLDEPAAGLDP-------EGRKEMMQLFKDYQKAGHTVILVTH 203 (287)
T ss_pred cCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 99999999999999997 4556667777777666766443333
No 144
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.59 E-value=1.4e-15 Score=159.47 Aligned_cols=131 Identities=21% Similarity=0.136 Sum_probs=109.4
Q ss_pred eCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----------cccccccCCC
Q 010501 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDD 114 (509)
Q Consensus 47 ~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----------~r~i~~~fq~ 114 (509)
++...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|.... ++.++++||+
T Consensus 3 ~~~~~~l~~vs~~i~~Ge---i~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGE---IFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred cCCceeEEeeEEEEcCCC---EEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 456778999999999999 99999999999999999999999 79999999997432 3468999999
Q ss_pred CCCCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCC
Q 010501 115 PRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (509)
Q Consensus 115 p~~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~l 177 (509)
+.+++..++.+|+..... +. .+.. ...+...+..|+|+.+++..+++++.++.++|.|||...
T Consensus 80 ~~l~~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~sa 159 (363)
T TIGR01186 80 FALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSA 159 (363)
T ss_pred CcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 999999999999875321 10 0111 123445567899999999999999999999999999999
Q ss_pred CCe
Q 010501 178 IDL 180 (509)
Q Consensus 178 LDl 180 (509)
+|.
T Consensus 160 LD~ 162 (363)
T TIGR01186 160 LDP 162 (363)
T ss_pred CCH
Confidence 998
No 145
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.59 E-value=1.6e-15 Score=153.78 Aligned_cols=163 Identities=13% Similarity=0.156 Sum_probs=123.3
Q ss_pred eeeeEEEeCc-----EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~-----~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------- 104 (509)
.+++++.++. ..+|+++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.+|+....
T Consensus 5 ~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 5 FQKVEHRYQYKTPFERRALYDVNVSIPSGS---YVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEECCCCcccccceeeEEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4567777753 569999999999999 99999999999999999999998 78999999997532
Q ss_pred --cccccccCCCCC-CCchhhHHHHHHhhcc--C--------------cceecc--ccccCCCCcCCCeeeeecCccEEE
Q 010501 105 --SRIIDGNFDDPR-LTDYDTLLENIRGLKE--G--------------KAVQVP--IYDFKSSSRIGYRTLEVPSSRIVI 163 (509)
Q Consensus 105 --~r~i~~~fq~p~-~~d~~tl~e~L~~L~~--g--------------~~i~~P--~yD~~~~~rsgg~~~~v~~a~VLI 163 (509)
.+.++++||+|. .+...++.+++..... + +.+..+ ..+......|+|+.+++..+++++
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~ 161 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLA 161 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 135789999873 2334688888864211 1 011222 235556778999999999999999
Q ss_pred EecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCHHHHHH
Q 010501 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIH 212 (509)
Q Consensus 164 VEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~e~Vi~ 212 (509)
.++.+++.|||...+|. .....+.++.+++.+. |.++.-+.|
T Consensus 162 ~~P~llllDEPt~~LD~-------~~~~~l~~~L~~l~~~~g~tviiitH 204 (290)
T PRK13634 162 MEPEVLVLDEPTAGLDP-------KGRKEMMEMFYKLHKEKGLTTVLVTH 204 (290)
T ss_pred cCCCEEEEECCcccCCH-------HHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 99999999999999998 3456666777777553 766543333
No 146
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=99.58 E-value=2.2e-15 Score=146.36 Aligned_cols=137 Identities=16% Similarity=0.139 Sum_probs=109.2
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC------CCeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll------p~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++....
T Consensus 3 ~~~l~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 3 LRDLNVYYGDKHALKDISLDIPKGE---ITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred EEEEEEEcCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 3578888877789999999999999 99999999999999999999997 47899999987431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--C--c-------------ceecc-ccccC--CCCcCCCeeeeecCccEEEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G--K-------------AVQVP-IYDFK--SSSRIGYRTLEVPSSRIVII 164 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g--~-------------~i~~P-~yD~~--~~~rsgg~~~~v~~a~VLIV 164 (509)
.+.+++++|++..+ ..++.+++..... + . ..... ..+.. ....|+|+.+++..+++++.
T Consensus 80 ~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~ 158 (227)
T cd03260 80 RRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALAN 158 (227)
T ss_pred HhhEEEEecCchhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhc
Confidence 13478899998877 6788888764211 0 0 00111 12233 36789999999999999999
Q ss_pred ecceeeeccccCCCCe
Q 010501 165 EGIYALSEKLRPLIDL 180 (509)
Q Consensus 165 EGi~aL~dElr~lLDl 180 (509)
++.+++.|||...+|.
T Consensus 159 ~p~llllDEPt~~LD~ 174 (227)
T cd03260 159 EPEVLLLDEPTSALDP 174 (227)
T ss_pred CCCEEEEeCCCccCCH
Confidence 9999999999999997
No 147
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=1.8e-15 Score=153.31 Aligned_cols=162 Identities=16% Similarity=0.217 Sum_probs=122.6
Q ss_pred eeeeEEEeCc-----EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~-----~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------- 104 (509)
.++++|.++. ..+|+++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+||....
T Consensus 4 ~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge---~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 4 FEKVNYTYQPNSPFASRALFDIDLEVKKGS---YTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred EEEEEEEeCCCCcccccceeeeEEEEcCCC---EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 3567777752 259999999999999 99999999999999999999998 78999999997532
Q ss_pred --cccccccCCCC--CCCchhhHHHHHHhhcc--C---c-----------ceec-c-ccccCCCCcCCCeeeeecCccEE
Q 010501 105 --SRIIDGNFDDP--RLTDYDTLLENIRGLKE--G---K-----------AVQV-P-IYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 --~r~i~~~fq~p--~~~d~~tl~e~L~~L~~--g---~-----------~i~~-P-~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
++.++++||+| ..+. .++.+++.+... + . .+.. + ..+...+..|+|+.+++..++++
T Consensus 81 ~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL 159 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGIL 159 (288)
T ss_pred HHHhhEEEEecCcchhccc-chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHH
Confidence 13578999987 3444 588888765321 1 0 0122 1 23455577899999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
+.++.+++.|||...+|. ...+.+..+.+++...|.++.-+.|
T Consensus 160 ~~~p~illLDEPt~gLD~-------~~~~~l~~~l~~l~~~g~til~vtH 202 (288)
T PRK13643 160 AMEPEVLVLDEPTAGLDP-------KARIEMMQLFESIHQSGQTVVLVTH 202 (288)
T ss_pred HhCCCEEEEECCccCCCH-------HHHHHHHHHHHHHHHCCCEEEEEec
Confidence 999999999999999998 3455566666666666766544444
No 148
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.58 E-value=4.9e-16 Score=149.94 Aligned_cols=154 Identities=19% Similarity=0.263 Sum_probs=119.4
Q ss_pred eEEEeCcEE-EeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc------cccccccCCC
Q 010501 43 LSFEKGFFI-VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNFDD 114 (509)
Q Consensus 43 lsf~~g~~~-iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~------~r~i~~~fq~ 114 (509)
++..++... +++++||.++.|+ |+||.|+|||||||++++|+.++ |+.|.+..|+++.. ++.++..+.+
T Consensus 7 l~K~y~~~v~AvrdVSF~ae~Ge---i~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl~~e 83 (245)
T COG4555 7 LTKSYGSKVQAVRDVSFEAEEGE---ITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVLFGE 83 (245)
T ss_pred hhhhccCHHhhhhheeEEeccce---EEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhcceecCC
Confidence 334445444 8899999999999 99999999999999999999999 99999999999643 2568888888
Q ss_pred CCCCchhhHHHHHHhhccC-----cce-----------ec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCC
Q 010501 115 PRLTDYDTLLENIRGLKEG-----KAV-----------QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (509)
Q Consensus 115 p~~~d~~tl~e~L~~L~~g-----~~i-----------~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~l 177 (509)
-..++.++.+|||..+..- ..+ .+ ...|...+..|.|+.+++..++.|+-++..++.|||.+.
T Consensus 84 ~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sG 163 (245)
T COG4555 84 RGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSG 163 (245)
T ss_pred cChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCC
Confidence 8899999999999875431 111 11 123444566778899999999999999999999999999
Q ss_pred CCeEEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 178 IDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 178 LDlkIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
+|+. ..+.++.+.+.+++.|+.
T Consensus 164 LDi~-------~~r~~~dfi~q~k~egr~ 185 (245)
T COG4555 164 LDIR-------TRRKFHDFIKQLKNEGRA 185 (245)
T ss_pred ccHH-------HHHHHHHHHHHhhcCCcE
Confidence 9982 334444455555555554
No 149
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.58 E-value=2.4e-15 Score=162.93 Aligned_cols=163 Identities=15% Similarity=0.092 Sum_probs=127.6
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------cccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~~ 110 (509)
.+++++.++...+++++||.+.+|+ ++||+||||||||||+++|++++ |..|.|.+++.... .+.+++
T Consensus 7 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 83 (501)
T PRK10762 7 LKGIDKAFPGVKALSGAALNVYPGR---VMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGI 83 (501)
T ss_pred EeeeEEEeCCeEEeeeeeEEEcCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 4678888887889999999999999 99999999999999999999998 78999999986431 234789
Q ss_pred cCCCCCCCchhhHHHHHHhhcc-----C----c----c-------eecc-ccccCCCCcCCCeeeeecCccEEEEeccee
Q 010501 111 NFDDPRLTDYDTLLENIRGLKE-----G----K----A-------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~-----g----~----~-------i~~P-~yD~~~~~rsgg~~~~v~~a~VLIVEGi~a 169 (509)
++|++..++..++.+++..... + . . +..+ ..+...++.|+|+.+++..+++++.++.++
T Consensus 84 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 163 (501)
T PRK10762 84 IHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVI 163 (501)
T ss_pred EEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999888888889998864211 0 0 0 0111 224445678999999999999999999999
Q ss_pred eeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 170 L~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
|+|||++.+|. .....+.++.+.+.+.|.++.-+.|
T Consensus 164 lLDEPt~~LD~-------~~~~~l~~~l~~l~~~~~tvii~sH 199 (501)
T PRK10762 164 IMDEPTDALTD-------TETESLFRVIRELKSQGRGIVYISH 199 (501)
T ss_pred EEeCCcCCCCH-------HHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 99999999998 4555666677777666766443333
No 150
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=2.7e-15 Score=149.85 Aligned_cols=158 Identities=16% Similarity=0.115 Sum_probs=121.9
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~~ 111 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.++++
T Consensus 14 i~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 90 (265)
T PRK10575 14 LRNVSFRVPGRTLLHPLSLTFPAGK---VTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYL 90 (265)
T ss_pred EeeEEEEECCEEEEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEe
Confidence 4678888877889999999999999 99999999999999999999998 68999999986421 1347888
Q ss_pred CCCCCCCchhhHHHHHHhhcc---C------c-----------ceec-cccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 112 FDDPRLTDYDTLLENIRGLKE---G------K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 112 fq~p~~~d~~tl~e~L~~L~~---g------~-----------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
+|++..++..++.+++..... + . .+.. ...+...+..|+|+.+++..++.++.++.+++
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 170 (265)
T PRK10575 91 PQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLL 170 (265)
T ss_pred ccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 998877777788888764210 0 0 0011 12344556789999999999999999999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCH
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEP 207 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~ 207 (509)
.|||...+|. ...+.+.++.+++... |.++
T Consensus 171 LDEPt~~LD~-------~~~~~~~~~l~~l~~~~~~ti 201 (265)
T PRK10575 171 LDEPTSALDI-------AHQVDVLALVHRLSQERGLTV 201 (265)
T ss_pred EcCCcccCCH-------HHHHHHHHHHHHHHHhcCCEE
Confidence 9999999998 3455556666665443 5553
No 151
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=1.5e-15 Score=153.21 Aligned_cols=163 Identities=15% Similarity=0.186 Sum_probs=124.9
Q ss_pred eeeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
.+++++.++. ..+++++||.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.++|.... .+.++
T Consensus 8 ~~~l~~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 8 VEHISFRYPDAATYALKDVSFSVYEGE---WVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred EEEEEEEeCCCCccceeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 4677777753 569999999999999 99999999999999999999998 79999999997532 13578
Q ss_pred ccCCCCC-CCchhhHHHHHHhhccCc--c--------------ee-ccccccCCCCcCCCeeeeecCccEEEEecceeee
Q 010501 110 GNFDDPR-LTDYDTLLENIRGLKEGK--A--------------VQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (509)
Q Consensus 110 ~~fq~p~-~~d~~tl~e~L~~L~~g~--~--------------i~-~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~ 171 (509)
+++|++. .+...++.+++....... . .. .+..+...+..|+|+.+++..+++++.++.+++.
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 164 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIIL 164 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 9999884 566678888886532100 0 00 1233445567899999999999999999999999
Q ss_pred ccccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCHHHHHH
Q 010501 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIH 212 (509)
Q Consensus 172 dElr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~e~Vi~ 212 (509)
|||...+|. .....+..+.+++... |.++.-+.|
T Consensus 165 DEPt~gLD~-------~~~~~l~~~l~~l~~~~~~tilivsH 199 (279)
T PRK13635 165 DEATSMLDP-------RGRREVLETVRQLKEQKGITVLSITH 199 (279)
T ss_pred eCCcccCCH-------HHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 999999998 4556667777776654 666544434
No 152
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.58 E-value=2e-15 Score=163.76 Aligned_cols=163 Identities=16% Similarity=0.179 Sum_probs=128.3
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------cccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~~ 110 (509)
.+++++.++...+++++||.+.+|+ ++||+||||||||||+++|++++ |..|.|.++|.... .+.+++
T Consensus 8 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~ 84 (510)
T PRK09700 8 MAGIGKSFGPVHALKSVNLTVYPGE---IHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGI 84 (510)
T ss_pred EeeeEEEcCCeEEeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEE
Confidence 4678888888889999999999999 99999999999999999999998 78999999986431 134789
Q ss_pred cCCCCCCCchhhHHHHHHhhcc------Cc------c-----------eec-cccccCCCCcCCCeeeeecCccEEEEec
Q 010501 111 NFDDPRLTDYDTLLENIRGLKE------GK------A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~------g~------~-----------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEG 166 (509)
++|++..++..++.+++..... +. . +.. ...+...+..|+|+.+++..+++++.++
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p 164 (510)
T PRK09700 85 IYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDA 164 (510)
T ss_pred EeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCC
Confidence 9999888888888888754210 10 0 001 1234445678999999999999999999
Q ss_pred ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 167 i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
.++++|||.+.+|. .....+..+.+++.+.|.++.-+.|
T Consensus 165 ~lllLDEPt~~LD~-------~~~~~l~~~l~~l~~~g~tiiivsH 203 (510)
T PRK09700 165 KVIIMDEPTSSLTN-------KEVDYLFLIMNQLRKEGTAIVYISH 203 (510)
T ss_pred CEEEEeCCCCCCCH-------HHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 99999999999998 4566777777777777776544434
No 153
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.58 E-value=2e-15 Score=141.19 Aligned_cols=116 Identities=22% Similarity=0.298 Sum_probs=99.5
Q ss_pred eeeEEEeCcE--EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccccc
Q 010501 41 DTLSFEKGFF--IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (509)
Q Consensus 41 ~~lsf~~g~~--~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~ 110 (509)
+++++.++.. .++++++|.+++|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+.+++
T Consensus 4 ~~l~~~~~~~~~~~l~~i~~~i~~G~---~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 4 KNVSFSYPGRPKPVLKDVSLTIKPGE---KVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred EEEEEEcCCCCcccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 5667766654 79999999999999 99999999999999999999998 78899999986432 134678
Q ss_pred cCCCCCCCchhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 111 NFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
.+|++..++ .++.+++ .|+|+.+++..+++++.++.+++.|||...+|.
T Consensus 81 ~~~~~~~~~-~t~~e~l--------------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~ 129 (171)
T cd03228 81 VPQDPFLFS-GTIRENI--------------------LSGGQRQRIAIARALLRDPPILILDEATSALDP 129 (171)
T ss_pred EcCCchhcc-chHHHHh--------------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCH
Confidence 899987665 4777776 678899999999999999999999999999997
No 154
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=2.4e-15 Score=149.05 Aligned_cols=157 Identities=14% Similarity=0.187 Sum_probs=120.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~~ 111 (509)
.+++++.++...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.++++
T Consensus 5 ~~~l~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 5 TENLTVGYGTKRILNDLSLSLPTGK---ITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEeEEEEECCEEEEeeeeeEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 4578888888889999999999999 99999999999999999999998 78999999986421 1347889
Q ss_pred CCCCCCCchhhHHHHHHhhcc------C---c-----------ceec-cccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 112 FDDPRLTDYDTLLENIRGLKE------G---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 112 fq~p~~~d~~tl~e~L~~L~~------g---~-----------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
+|++..++..++.+++..... + . .... ...+...+..|+|+.+++..+++++.++.+++
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 161 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVL 161 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999877777788888764210 0 0 0011 12344456789999999999999999999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
.|||...+|. ...+.+..+.+++...|.+
T Consensus 162 lDEP~~~LD~-------~~~~~l~~~l~~l~~~~~t 190 (255)
T PRK11231 162 LDEPTTYLDI-------NHQVELMRLMRELNTQGKT 190 (255)
T ss_pred EcCCcccCCH-------HHHHHHHHHHHHHHHCCCE
Confidence 9999999997 3444555555555544544
No 155
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=1.7e-15 Score=151.66 Aligned_cols=159 Identities=15% Similarity=0.158 Sum_probs=117.9
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---------ccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---------~r~i~ 109 (509)
.+++++.++...+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.++
T Consensus 4 ~~~l~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 4 TSDLWFRYQDEPVLKGLNLDFSLSP---VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred EEEEEEEcCCcccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 3677888877789999999999999 99999999999999999999998 78999999987531 13478
Q ss_pred ccCCCCCC-CchhhHHHHHHhhcc--Cc--------------ceecc-ccccCCCCcCCCeeeeecCccEEEEecceeee
Q 010501 110 GNFDDPRL-TDYDTLLENIRGLKE--GK--------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (509)
Q Consensus 110 ~~fq~p~~-~d~~tl~e~L~~L~~--g~--------------~i~~P-~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~ 171 (509)
+++|++.. +...++.+++..... +. .+... ..+......|+|+.+++..+++++.++.+++.
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllL 160 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLL 160 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 88998753 233456666543210 10 00111 12334467899999999999999999999999
Q ss_pred ccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHH
Q 010501 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (509)
Q Consensus 172 dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e 208 (509)
|||...+|. .....+.++.+++.+.|.++.
T Consensus 161 DEPt~~LD~-------~~~~~l~~~l~~~~~~g~tii 190 (271)
T PRK13638 161 DEPTAGLDP-------AGRTQMIAIIRRIVAQGNHVI 190 (271)
T ss_pred eCCcccCCH-------HHHHHHHHHHHHHHHCCCEEE
Confidence 999999997 344555566666655565543
No 156
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.58 E-value=1.8e-15 Score=152.17 Aligned_cols=164 Identities=14% Similarity=0.189 Sum_probs=124.1
Q ss_pred eeeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------ccccc
Q 010501 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~ 109 (509)
.+++++.++ ...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.++
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 4 LENVSYSYPDGTPALENINLVIKKGE---YIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred EEEEEEEcCCCCceeeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 357777774 4679999999999999 99999999999999999999998 78999999987432 13478
Q ss_pred ccCCCCCC-CchhhHHHHHHhhccCc----------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeee
Q 010501 110 GNFDDPRL-TDYDTLLENIRGLKEGK----------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (509)
Q Consensus 110 ~~fq~p~~-~d~~tl~e~L~~L~~g~----------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~ 171 (509)
+++|+|.. +...++.+++....... .... ...+...+..|+|+.+++..+++++.++.+++.
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllL 160 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIF 160 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 89998753 55568888875432100 0111 123444567889999999999999999999999
Q ss_pred ccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHH
Q 010501 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (509)
Q Consensus 172 dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~ 213 (509)
|||...+|. ...+.+.++.+++.+.|.++.-+.|.
T Consensus 161 DEPt~gLD~-------~~~~~l~~~l~~l~~~g~til~~tH~ 195 (274)
T PRK13644 161 DEVTSMLDP-------DSGIAVLERIKKLHEKGKTIVYITHN 195 (274)
T ss_pred eCCcccCCH-------HHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 999999998 34556666777776667765444443
No 157
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.57 E-value=3.5e-15 Score=147.96 Aligned_cols=157 Identities=15% Similarity=0.172 Sum_probs=120.2
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~~ 111 (509)
.+++++.++...+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.+++.
T Consensus 4 ~~~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 4 LSRVSWSAGGRLIVDGVDVTAPPGS---LTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred EEeEEEEECCEEEEeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 3578888888889999999999999 99999999999999999999998 78999999986432 1247888
Q ss_pred CCCCCCCchhhHHHHHHhhcc--------C--c---c-------eec-cccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 112 FDDPRLTDYDTLLENIRGLKE--------G--K---A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 112 fq~p~~~d~~tl~e~L~~L~~--------g--~---~-------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
+|++..+...++.+++..... . . . +.. ...+......|+|+.+++..+++++.++.+++
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lll 160 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLL 160 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 998876666788888754210 0 0 0 001 12344456788999999999999999999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
.|||.+.+|. .....+..+.+.+.+.|.+
T Consensus 161 lDEPt~~LD~-------~~~~~l~~~l~~~~~~~~t 189 (256)
T TIGR03873 161 LDEPTNHLDV-------RAQLETLALVRELAATGVT 189 (256)
T ss_pred EcCccccCCH-------HHHHHHHHHHHHHHhcCCE
Confidence 9999999997 3445555555555544544
No 158
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.57 E-value=3.6e-15 Score=148.87 Aligned_cols=158 Identities=16% Similarity=0.203 Sum_probs=122.1
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~~ 111 (509)
.+++++.++...+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.++++
T Consensus 10 i~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v 86 (265)
T PRK10253 10 GEQLTLGYGKYTVAENLTVEIPDGH---FTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLL 86 (265)
T ss_pred EEEEEEEECCEEEeeecceEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEe
Confidence 4678888888889999999999999 99999999999999999999998 78999999987432 1347889
Q ss_pred CCCCCCCchhhHHHHHHhhc-cC--------c----c-------eec-cccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 112 FDDPRLTDYDTLLENIRGLK-EG--------K----A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 112 fq~p~~~d~~tl~e~L~~L~-~g--------~----~-------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
+|++..++..++.+++.... .. . . ... ...+......|+|+.+++..+++++..+.+++
T Consensus 87 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 166 (265)
T PRK10253 87 AQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIML 166 (265)
T ss_pred eccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEE
Confidence 99988877778888875421 00 0 0 001 12244456788999999999999999999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCH
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~ 207 (509)
.|||...+|. .....+.++.+++.. +|.++
T Consensus 167 lDEPt~gLD~-------~~~~~l~~~L~~l~~~~~~ti 197 (265)
T PRK10253 167 LDEPTTWLDI-------SHQIDLLELLSELNREKGYTL 197 (265)
T ss_pred EeCccccCCH-------HHHHHHHHHHHHHHHhcCCEE
Confidence 9999999997 345556666666554 36554
No 159
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.57 E-value=4.2e-15 Score=155.04 Aligned_cols=159 Identities=16% Similarity=0.134 Sum_probs=120.4
Q ss_pred eeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----------ccccc
Q 010501 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIID 109 (509)
Q Consensus 42 ~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----------~r~i~ 109 (509)
++++.++.+.+ +++|.+++|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+.++
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Ge---i~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQG---VTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 56677776554 8999999999 99999999999999999999998 78999999986421 23578
Q ss_pred ccCCCCCCCchhhHHHHHHhhccC---cc-----------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccc
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEG---KA-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g---~~-----------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dEl 174 (509)
++||++..++..++.+++...... .. ... +..+......|+|+.+++..+++++.++.++++|||
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEP 158 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEP 158 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 999999999889999998752211 00 001 123444567899999999999999999999999999
Q ss_pred cCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCHHHHHH
Q 010501 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIH 212 (509)
Q Consensus 175 r~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~e~Vi~ 212 (509)
...+|. ...+.+..+.+++.+. |.++.-+.|
T Consensus 159 ts~LD~-------~~~~~l~~~L~~l~~~~g~tiiivtH 190 (354)
T TIGR02142 159 LAALDD-------PRKYEILPYLERLHAEFGIPILYVSH 190 (354)
T ss_pred CcCCCH-------HHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 999998 3445555555555543 655433333
No 160
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=4.5e-15 Score=146.60 Aligned_cols=152 Identities=18% Similarity=0.167 Sum_probs=117.1
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p-----~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|++++ | ..|.|.+++....
T Consensus 7 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (253)
T PRK14267 7 TVNLRVYYGSNHVIKGVDLKIPQNG---VFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEV 83 (253)
T ss_pred EEeEEEEeCCeeeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHH
Confidence 4678888877889999999999999 99999999999999999999998 4 3899999987432
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--C-----cc-----------eec-----cccccCCCCcCCCeeeeecCccE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G-----KA-----------VQV-----PIYDFKSSSRIGYRTLEVPSSRI 161 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g-----~~-----------i~~-----P~yD~~~~~rsgg~~~~v~~a~V 161 (509)
.+.+++++|++..++..++.+++..... + .. +.. ...+......|+|+.+++..+++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 163 (253)
T PRK14267 84 RREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARA 163 (253)
T ss_pred hhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHH
Confidence 1357889999988888888888864211 1 00 000 11233445678899999999999
Q ss_pred EEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHH
Q 010501 162 VIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ 201 (509)
Q Consensus 162 LIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~ 201 (509)
++.++.+++.|||...+|. .....+..+.+++.
T Consensus 164 l~~~p~llllDEP~~~LD~-------~~~~~l~~~l~~~~ 196 (253)
T PRK14267 164 LAMKPKILLMDEPTANIDP-------VGTAKIEELLFELK 196 (253)
T ss_pred HhcCCCEEEEcCCCccCCH-------HHHHHHHHHHHHHh
Confidence 9999999999999999997 23444444444443
No 161
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.57 E-value=3.9e-15 Score=146.18 Aligned_cols=158 Identities=20% Similarity=0.188 Sum_probs=121.4
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq 113 (509)
.+++++.++...+++++|+.+.+|+ ++||+|+||||||||+++|++.+ |..|.|.+++.... .+.+++++|
T Consensus 3 i~~l~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q 79 (237)
T TIGR00968 3 IANISKRFGSFQALDDVNLEVPTGS---LVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQ 79 (237)
T ss_pred EEEEEEEECCeeeeeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEec
Confidence 3577788777889999999999999 99999999999999999999998 68999999987532 235788999
Q ss_pred CCCCCchhhHHHHHHhhccCc---------c-------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 114 DPRLTDYDTLLENIRGLKEGK---------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~g~---------~-------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
++..++..++.+++....... . ... +..+......|+|+.+++..++.++-.+.+++.|||..
T Consensus 80 ~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~ 159 (237)
T TIGR00968 80 HYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFG 159 (237)
T ss_pred ChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 998888788888886432100 0 001 12333445678899999999999999999999999999
Q ss_pred CCCeEEEeecCchHHHHHHHHHHHHHc-CCCH
Q 010501 177 LIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEP 207 (509)
Q Consensus 177 lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~ 207 (509)
.+|. ...+.+..+.+++.+. |.++
T Consensus 160 ~LD~-------~~~~~~~~~l~~~~~~~~~tv 184 (237)
T TIGR00968 160 ALDA-------KVRKELRSWLRKLHDEVHVTT 184 (237)
T ss_pred cCCH-------HHHHHHHHHHHHHHHhcCCEE
Confidence 9998 3455555555555443 5443
No 162
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=99.57 E-value=6.2e-15 Score=147.48 Aligned_cols=137 Identities=16% Similarity=0.130 Sum_probs=110.2
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp------~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...+++++||.+++|+ +++|+|+||||||||+++|+++++ ..|.|.+++....
T Consensus 22 ~~nl~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~ 98 (267)
T PRK14235 22 ARDVSVFYGEKQALFDVDLDIPEKT---VTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVEL 98 (267)
T ss_pred EEeEEEEECCEEEEEEEEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHH
Confidence 5778888888889999999999999 999999999999999999999983 6899999986432
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--C-----cc-----------eecc-----ccccCCCCcCCCeeeeecCccE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G-----KA-----------VQVP-----IYDFKSSSRIGYRTLEVPSSRI 161 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g-----~~-----------i~~P-----~yD~~~~~rsgg~~~~v~~a~V 161 (509)
++.+++++|++..++. ++.+++..... + .. ...+ .++......|+|+.+++..+++
T Consensus 99 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lara 177 (267)
T PRK14235 99 RARVGMVFQKPNPFPK-SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARA 177 (267)
T ss_pred hhceEEEecCCCCCCC-cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHH
Confidence 1347889999888774 88888864211 0 00 0111 1234456788999999999999
Q ss_pred EEEecceeeeccccCCCCe
Q 010501 162 VIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 162 LIVEGi~aL~dElr~lLDl 180 (509)
++.++.+++.|||...+|.
T Consensus 178 l~~~p~lllLDEPt~~LD~ 196 (267)
T PRK14235 178 IAVSPEVILMDEPCSALDP 196 (267)
T ss_pred HHcCCCEEEEeCCCcCCCH
Confidence 9999999999999999997
No 163
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=3.7e-15 Score=149.98 Aligned_cols=163 Identities=15% Similarity=0.167 Sum_probs=122.3
Q ss_pred eeeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc-------ccccc
Q 010501 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~-------r~i~~ 110 (509)
.+++++.++ ...++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.++|..... +.+++
T Consensus 6 ~~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 6 TRDLCYSYSGSKEALNNINFIAPRNS---RIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred EEEEEEEeCCCCceeeEeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 467788774 4569999999999999 99999999999999999999998 799999999974321 34788
Q ss_pred cCCCCC-CCchhhHHHHHHhhcc--Cc--------------cee-ccccccCCCCcCCCeeeeecCccEEEEecceeeec
Q 010501 111 NFDDPR-LTDYDTLLENIRGLKE--GK--------------AVQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (509)
Q Consensus 111 ~fq~p~-~~d~~tl~e~L~~L~~--g~--------------~i~-~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d 172 (509)
++|++. .+...++.+++..... +. .+. .+..+......|+|+.+++..+++++.++.+++.|
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilD 162 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLD 162 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 999874 2334577888753211 10 001 12345556778999999999999999999999999
Q ss_pred cccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCHHHHHH
Q 010501 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIH 212 (509)
Q Consensus 173 Elr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~e~Vi~ 212 (509)
||...+|. ...+.+.++.+.+.+. |.++.-+.|
T Consensus 163 EPt~gLD~-------~~~~~l~~~l~~l~~~~g~tvli~tH 196 (277)
T PRK13652 163 EPTAGLDP-------QGVKELIDFLNDLPETYGMTVIFSTH 196 (277)
T ss_pred CCcccCCH-------HHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 99999998 3455666666666553 666433333
No 164
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=3.7e-15 Score=145.23 Aligned_cols=149 Identities=20% Similarity=0.246 Sum_probs=113.1
Q ss_pred eeeEEEeCcE--EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccccc
Q 010501 41 DTLSFEKGFF--IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (509)
Q Consensus 41 ~~lsf~~g~~--~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~ 110 (509)
+++++.++.. .++++++|.+.+|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+.+++
T Consensus 4 ~~l~~~~~~~~~~~l~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 4 KNVTFRYPGDGPPVLRDISLDIPAGE---TVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred EEEEEEeCCCCccceeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 5667776554 79999999999999 99999999999999999999998 78999999986432 234788
Q ss_pred cCCCCCCCchhhHHHHHHhhccCcc------------e-----ecc-----ccccCCCCcCCCeeeeecCccEEEEecce
Q 010501 111 NFDDPRLTDYDTLLENIRGLKEGKA------------V-----QVP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~g~~------------i-----~~P-----~yD~~~~~rsgg~~~~v~~a~VLIVEGi~ 168 (509)
.+|++..++ .++.+++........ . ..| ..+......|+|+.+++..+++++.++.+
T Consensus 81 ~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 81 VSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred eCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999987776 588888865321100 0 000 12333457889999999999999999999
Q ss_pred eeeccccCCCCeEEEeecCchHHHHHHHHHHH
Q 010501 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDI 200 (509)
Q Consensus 169 aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~ 200 (509)
++.|||...+|. ...+.+..+.+.+
T Consensus 160 llLDEP~~~LD~-------~~~~~l~~~l~~~ 184 (234)
T cd03251 160 LILDEATSALDT-------ESERLVQAALERL 184 (234)
T ss_pred EEEeCccccCCH-------HHHHHHHHHHHHh
Confidence 999999999998 3344444444444
No 165
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=99.57 E-value=3.3e-15 Score=154.72 Aligned_cols=151 Identities=19% Similarity=0.232 Sum_probs=117.7
Q ss_pred EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------cccccccCCCC--C
Q 010501 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDP--R 116 (509)
Q Consensus 50 ~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----------~r~i~~~fq~p--~ 116 (509)
..+++++||.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|.... .+.++++||+| .
T Consensus 34 ~~~l~~vsl~i~~Ge---~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~ 110 (331)
T PRK15079 34 LKAVDGVTLRLYEGE---TLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLAS 110 (331)
T ss_pred eEEEeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhh
Confidence 579999999999999 99999999999999999999999 78999999987532 23578999998 4
Q ss_pred CCchhhHHHHHHhhcc----C--------------cceec-c-ccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 117 LTDYDTLLENIRGLKE----G--------------KAVQV-P-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 117 ~~d~~tl~e~L~~L~~----g--------------~~i~~-P-~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
+++..++.+++..... + ..+.. + ..+...++.|+|+.+++..+++++.++.+++.|||..
T Consensus 111 l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts 190 (331)
T PRK15079 111 LNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVS 190 (331)
T ss_pred cCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 5667888888754110 0 01122 2 3456667899999999999999999999999999999
Q ss_pred CCCeEEEeecCchHHHHHHHHHHHHH-cCCCHHHH
Q 010501 177 LIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEI 210 (509)
Q Consensus 177 lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e~V 210 (509)
.||.. ....+..+.+++.+ .|.++.-+
T Consensus 191 ~LD~~-------~~~~i~~lL~~l~~~~~~til~i 218 (331)
T PRK15079 191 ALDVS-------IQAQVVNLLQQLQREMGLSLIFI 218 (331)
T ss_pred cCCHH-------HHHHHHHHHHHHHHHcCCEEEEE
Confidence 99983 34556666666654 37664433
No 166
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=4.3e-15 Score=147.61 Aligned_cols=151 Identities=13% Similarity=0.183 Sum_probs=116.3
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp------~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...+++++||.+.+|+ ++||+|+||||||||+++|+++++ ..|.|.+++....
T Consensus 15 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 91 (258)
T PRK14268 15 VENLNLWYGEKQALKNVSMQIPKNS---VTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVEL 91 (258)
T ss_pred EeeeEEEeCCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHH
Confidence 4677887777789999999999999 999999999999999999999873 6899999987431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--Cc--------------ceec-----cccccCCCCcCCCeeeeecCccEEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g~--------------~i~~-----P~yD~~~~~rsgg~~~~v~~a~VLI 163 (509)
.+.+++++|++..++ .++.+++..... +. .... ...+......|+|+.+++..+++++
T Consensus 92 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~ 170 (258)
T PRK14268 92 RKNVGMVFQKPNPFP-MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLA 170 (258)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 134788999988877 788888864211 10 0000 1123445578899999999999999
Q ss_pred EecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHH
Q 010501 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ 201 (509)
Q Consensus 164 VEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~ 201 (509)
.++.+++.|||...+|. ...+.+.++.+.+.
T Consensus 171 ~~p~llllDEPt~~LD~-------~~~~~l~~~l~~l~ 201 (258)
T PRK14268 171 VKPKIILFDEPTSALDP-------ISTARIEDLIMNLK 201 (258)
T ss_pred cCCCEEEEeCCCcccCH-------HHHHHHHHHHHHHh
Confidence 99999999999999998 34445555555543
No 167
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.57 E-value=5.2e-15 Score=142.23 Aligned_cols=156 Identities=17% Similarity=0.191 Sum_probs=117.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq 113 (509)
.+++++.++... .++||.+.+|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+.+++++|
T Consensus 3 ~~~l~~~~~~~~--~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 77 (211)
T cd03298 3 LDKIRFSYGEQP--MHFDLTFAQGE---ITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQ 77 (211)
T ss_pred EEeEEEEeCCEe--cceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEec
Confidence 356677766544 29999999999 99999999999999999999998 78999999987432 245789999
Q ss_pred CCCCCchhhHHHHHHhhcc-C-c-------c-------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 114 DPRLTDYDTLLENIRGLKE-G-K-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~-g-~-------~-------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
++..++..++.+++..... . . . ... +..+......|+|+.+++..+++++.++.+++.|||..
T Consensus 78 ~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~ 157 (211)
T cd03298 78 ENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFA 157 (211)
T ss_pred ccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9988888899999864221 0 0 0 001 12344456788999999999999999999999999999
Q ss_pred CCCeEEEeecCchHHHHHHHHHHHHH-cCCCH
Q 010501 177 LIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (509)
Q Consensus 177 lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~ 207 (509)
.+|. .....+.++.+.+.. +|.++
T Consensus 158 ~LD~-------~~~~~l~~~l~~~~~~~~~ti 182 (211)
T cd03298 158 ALDP-------ALRAEMLDLVLDLHAETKMTV 182 (211)
T ss_pred cCCH-------HHHHHHHHHHHHHHHhcCCEE
Confidence 9998 344455555555543 35543
No 168
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.57 E-value=2.4e-15 Score=148.76 Aligned_cols=160 Identities=18% Similarity=0.135 Sum_probs=132.7
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc---ccccccCCCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS---RIIDGNFDDP 115 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~---r~i~~~fq~p 115 (509)
.++++..+|.+.++++|||.+++|+ +.|++|+|||||||+.++|.+++ |+.|.|+++|..... .+++|.+.+-
T Consensus 5 ie~vtK~Fg~k~av~~isf~v~~G~---i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEER 81 (300)
T COG4152 5 IEGVTKSFGDKKAVDNISFEVPPGE---IFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEER 81 (300)
T ss_pred EecchhccCceeeecceeeeecCCe---EEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhh
Confidence 4677888899999999999999999 99999999999999999999999 789999999975543 4689999999
Q ss_pred CCCchhhHHHHHHhhccCcce----------------ecccccc-CCCCcCCCeeeeecCccEEEEecceeeeccccCCC
Q 010501 116 RLTDYDTLLENIRGLKEGKAV----------------QVPIYDF-KSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (509)
Q Consensus 116 ~~~d~~tl~e~L~~L~~g~~i----------------~~P~yD~-~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lL 178 (509)
.+++-+++.+.|..+..-+.+ .+..|-. ...+.|.|..|.+.--..+|-|+.++++|||++.|
T Consensus 82 GLy~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGL 161 (300)
T COG4152 82 GLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGL 161 (300)
T ss_pred ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCC
Confidence 999999999999876642211 1111111 12346677778787777899999999999999999
Q ss_pred CeEEEeecCchHHHHHHHHHHHHHcCCCHHH
Q 010501 179 DLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (509)
Q Consensus 179 DlkIfVd~d~dirLiRRI~RD~~erG~t~e~ 209 (509)
|+ .++++++..+.+++++|.|+.-
T Consensus 162 DP-------VN~elLk~~I~~lk~~GatIif 185 (300)
T COG4152 162 DP-------VNVELLKDAIFELKEEGATIIF 185 (300)
T ss_pred Ch-------hhHHHHHHHHHHHHhcCCEEEE
Confidence 98 7899999999999999988543
No 169
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.57 E-value=5.2e-15 Score=138.21 Aligned_cols=119 Identities=15% Similarity=0.144 Sum_probs=102.1
Q ss_pred eeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCC
Q 010501 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (509)
Q Consensus 41 ~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~ 118 (509)
+++++.++ ...++++++|.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.+++. +.+++.+|++..+
T Consensus 4 ~~~~~~~~~~~~~l~~i~l~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----~~i~~~~q~~~~~ 76 (166)
T cd03223 4 ENLSLATPDGRVLLKDLSFEIKPGD---RLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----EDLLFLPQRPYLP 76 (166)
T ss_pred EEEEEEcCCCCeeeecCeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC----ceEEEECCCCccc
Confidence 56677664 3579999999999999 99999999999999999999998 78999998763 4678899988654
Q ss_pred chhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 119 DYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 119 d~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
..++.+++... .....|+|+.+++..+++++.++.+++.|||...+|.
T Consensus 77 -~~tv~~nl~~~-------------~~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~ 124 (166)
T cd03223 77 -LGTLREQLIYP-------------WDDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDE 124 (166)
T ss_pred -cccHHHHhhcc-------------CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCH
Confidence 56888887542 2357889999999999999999999999999999997
No 170
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.57 E-value=4.3e-15 Score=146.54 Aligned_cols=137 Identities=15% Similarity=0.164 Sum_probs=109.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp------~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...++++++|.+++|+ +++|+|+||||||||+++|+++++ ..|.|.+++....
T Consensus 6 ~~~l~~~~~~~~~l~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~ 82 (250)
T PRK14262 6 IENFSAYYGEKKAVKNVTMKIFKNQ---ITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEY 82 (250)
T ss_pred EEeeEEEeCCceeEeeeeEeecCCC---EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHh
Confidence 4678888877789999999999999 999999999999999999999873 6899999986431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--Cc----ce-----------ec-----cccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK----AV-----------QV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g~----~i-----------~~-----P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++..++ .++.+++..... +. .. .. ...+......|+|+.+++..++++
T Consensus 83 ~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al 161 (250)
T PRK14262 83 RKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARAL 161 (250)
T ss_pred hhhEEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHH
Confidence 235788999998877 788888864221 00 00 00 012344456788999999999999
Q ss_pred EEecceeeeccccCCCCe
Q 010501 163 IIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDl 180 (509)
+.++.+++.|||...+|.
T Consensus 162 ~~~p~llllDEP~~~LD~ 179 (250)
T PRK14262 162 AVEPEVILLDEPTSALDP 179 (250)
T ss_pred hCCCCEEEEeCCccccCH
Confidence 999999999999999998
No 171
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.57 E-value=3.9e-15 Score=160.87 Aligned_cols=162 Identities=10% Similarity=0.079 Sum_probs=126.7
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------ccccccc
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~~~ 111 (509)
+++++.++...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.++++
T Consensus 2 ~nl~~~~~~~~il~~vs~~i~~Ge---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v 78 (491)
T PRK10982 2 SNISKSFPGVKALDNVNLKVRPHS---IHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMV 78 (491)
T ss_pred CceEEEeCCEEeeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEE
Confidence 467888887889999999999999 99999999999999999999998 78999999986432 1357899
Q ss_pred CCCCCCCchhhHHHHHHhhcc---Cc-----c-----------eecc-ccccCCCCcCCCeeeeecCccEEEEecceeee
Q 010501 112 FDDPRLTDYDTLLENIRGLKE---GK-----A-----------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (509)
Q Consensus 112 fq~p~~~d~~tl~e~L~~L~~---g~-----~-----------i~~P-~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~ 171 (509)
+|++..++..++.+++..... +. . .... ..+...+..|+|+.+++..+++++.++.+++.
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllL 158 (491)
T PRK10982 79 HQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIM 158 (491)
T ss_pred ecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999888888888888764211 10 0 0011 12344567899999999999999999999999
Q ss_pred ccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 172 dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
|||...+|. .....+..+.+++...|.++.-+.|
T Consensus 159 DEPt~~LD~-------~~~~~l~~~l~~l~~~g~tvii~tH 192 (491)
T PRK10982 159 DEPTSSLTE-------KEVNHLFTIIRKLKERGCGIVYISH 192 (491)
T ss_pred eCCCCCCCH-------HHHHHHHHHHHHHHhCCCEEEEEec
Confidence 999999998 3556666777777767776544333
No 172
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.57 E-value=3e-15 Score=150.48 Aligned_cols=158 Identities=14% Similarity=0.198 Sum_probs=117.9
Q ss_pred eeeeEEEeCc-----EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~-----~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------- 104 (509)
.+++++.++. ..+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++....
T Consensus 5 ~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 5 LQNVSYTYQAGTPFEGRALFDVNLTIEDGS---YTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred EEEEEEEcCCCCccccceeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 4567777753 469999999999999 99999999999999999999998 78999999986431
Q ss_pred --cccccccCCCC--CCCchhhHHHHHHhhcc--C---c-----------ceecc--ccccCCCCcCCCeeeeecCccEE
Q 010501 105 --SRIIDGNFDDP--RLTDYDTLLENIRGLKE--G---K-----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 --~r~i~~~fq~p--~~~d~~tl~e~L~~L~~--g---~-----------~i~~P--~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++ ..++ .++.+++..... + . ..... ..+......|+|+.+++..++++
T Consensus 82 ~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al 160 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGIL 160 (280)
T ss_pred HHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 13478899987 3344 578888754211 0 0 01111 12444567889999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHH
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e 208 (509)
+.++.+++.|||...+|. ...+.+.++.+++.+.|.++.
T Consensus 161 ~~~p~lllLDEPt~~LD~-------~~~~~l~~~l~~~~~~~~tii 199 (280)
T PRK13649 161 AMEPKILVLDEPTAGLDP-------KGRKELMTLFKKLHQSGMTIV 199 (280)
T ss_pred HcCCCEEEEeCCcccCCH-------HHHHHHHHHHHHHHHCCCEEE
Confidence 999999999999999998 345556666666655565543
No 173
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=99.56 E-value=4.6e-15 Score=146.32 Aligned_cols=150 Identities=15% Similarity=0.202 Sum_probs=115.0
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp------~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|+++++ ..|.|.+++....
T Consensus 6 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 6 VKDLDLFYGDFQALKKINLDIEENQ---VTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred EEEEEEEECCceeeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 4678888877789999999999999 999999999999999999999862 5899999986432
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--Cc----ce-----------ec-----cccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK----AV-----------QV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g~----~i-----------~~-----P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
++.+++++|++..++ .++.+++..... +. .. .. ...+......|+|+.+++..++++
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14240 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARAL 161 (250)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 234788999988877 788888865321 10 00 00 112344567889999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHH
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDI 200 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~ 200 (509)
+.++.+++.|||...+|. ...+.+.++.+++
T Consensus 162 ~~~p~llllDEP~~~LD~-------~~~~~l~~~l~~~ 192 (250)
T PRK14240 162 AVEPEVLLMDEPTSALDP-------ISTLKIEELIQEL 192 (250)
T ss_pred hcCCCEEEEeCCCccCCH-------HHHHHHHHHHHHH
Confidence 999999999999999998 3344444444444
No 174
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=4.9e-15 Score=144.89 Aligned_cols=158 Identities=22% Similarity=0.220 Sum_probs=122.7
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq 113 (509)
.+++++.++.+.+++++++.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.+++.... .+.+++++|
T Consensus 3 ~~~l~~~~~~~~il~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 79 (232)
T cd03300 3 LENVSKFYGGFVALDGVSLDIKEGE---FFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQ 79 (232)
T ss_pred EEeEEEEeCCeeeeccceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEec
Confidence 4677888877889999999999999 99999999999999999999998 68899999987432 245788999
Q ss_pred CCCCCchhhHHHHHHhhcc--C---c-----------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 114 DPRLTDYDTLLENIRGLKE--G---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~--g---~-----------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
++..++..++.+++..... + . .+.. +..+......|+|+.+++..+++++..+.+++.|||..
T Consensus 80 ~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~ 159 (232)
T cd03300 80 NYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLG 159 (232)
T ss_pred ccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 9988887788888764211 0 0 0011 12233445678899999999999999999999999999
Q ss_pred CCCeEEEeecCchHHHHHHHHHHHHHc-CCCH
Q 010501 177 LIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEP 207 (509)
Q Consensus 177 lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~ 207 (509)
.+|. ...+.+..+.+++..+ |.++
T Consensus 160 gLD~-------~~~~~l~~~l~~~~~~~~~ti 184 (232)
T cd03300 160 ALDL-------KLRKDMQLELKRLQKELGITF 184 (232)
T ss_pred cCCH-------HHHHHHHHHHHHHHHHcCCEE
Confidence 9998 3455666666666543 6553
No 175
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.56 E-value=4.6e-15 Score=160.80 Aligned_cols=164 Identities=13% Similarity=0.061 Sum_probs=128.7
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------cccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~~ 110 (509)
.+++++.++...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++.... ++.+++
T Consensus 7 ~~~l~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~ 83 (501)
T PRK11288 7 FDGIGKTFPGVKALDDISFDCRAGQ---VHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAI 83 (501)
T ss_pred EeeeEEEECCEEEEeeeeEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEE
Confidence 3678888887889999999999999 99999999999999999999998 78999999886431 235789
Q ss_pred cCCCCCCCchhhHHHHHHhhcc----Cc----c-----------eec-cccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 111 NFDDPRLTDYDTLLENIRGLKE----GK----A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~----g~----~-----------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
++|++..++..++.+++..... +. . +.. +..+...+..|+|+.+++..+++++.++.+++
T Consensus 84 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lll 163 (501)
T PRK11288 84 IYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIA 163 (501)
T ss_pred EEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999888888888888865211 10 0 011 12344456789999999999999999999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHH
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~ 213 (509)
+|||...+|. .....+..+.+++.+.|.++.-+.|.
T Consensus 164 LDEPt~~LD~-------~~~~~l~~~l~~~~~~g~tiiiitHd 199 (501)
T PRK11288 164 FDEPTSSLSA-------REIEQLFRVIRELRAEGRVILYVSHR 199 (501)
T ss_pred EcCCCCCCCH-------HHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 9999999998 45666777777777677765444443
No 176
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=99.56 E-value=6.4e-15 Score=142.85 Aligned_cols=157 Identities=18% Similarity=0.199 Sum_probs=116.9
Q ss_pred eeeEEEeCc-------EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCc----cCc----
Q 010501 41 DTLSFEKGF-------FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY----NDS---- 104 (509)
Q Consensus 41 ~~lsf~~g~-------~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y----~~~---- 104 (509)
+++++.++. ..++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++. ...
T Consensus 5 ~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 5 EDLSKTFTLHQQGGVRLPVLKNVSLTVNAGE---CVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EeeEEEeecccCCCcceEEEecceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 566666642 579999999999999 99999999999999999999998 78899999731 110
Q ss_pred -------cccccccCCCCCCCchhhHHHHHHhh-c-cCc--------------ceeccc-c-ccCCCCcCCCeeeeecCc
Q 010501 105 -------SRIIDGNFDDPRLTDYDTLLENIRGL-K-EGK--------------AVQVPI-Y-DFKSSSRIGYRTLEVPSS 159 (509)
Q Consensus 105 -------~r~i~~~fq~p~~~d~~tl~e~L~~L-~-~g~--------------~i~~P~-y-D~~~~~rsgg~~~~v~~a 159 (509)
.+.+++++|++..++..++.+++... . .+. ....+. + +......|+|+.+++..+
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la 161 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIA 161 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHH
Confidence 13478899999888877888777541 1 110 011111 1 334567889999999999
Q ss_pred cEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 160 ~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
++++.++.+++.|||...+|. ...+.+..+.+.+.++|.++
T Consensus 162 ral~~~p~llllDEPt~~LD~-------~~~~~l~~~l~~~~~~g~ti 202 (224)
T TIGR02324 162 RGFIADYPILLLDEPTASLDA-------ANRQVVVELIAEAKARGAAL 202 (224)
T ss_pred HHHhcCCCEEEEcCCcccCCH-------HHHHHHHHHHHHHHhcCCEE
Confidence 999999999999999999997 34555555556655556553
No 177
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.56 E-value=8.3e-15 Score=139.68 Aligned_cols=136 Identities=17% Similarity=0.110 Sum_probs=105.7
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---cccccccCCCCC
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---SRIIDGNFDDPR 116 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---~r~i~~~fq~p~ 116 (509)
+++++.++...+++ ++|.+++|+ +++|+|+||||||||+++|++.. |..|.|.+++.... .+.+++.++++.
T Consensus 5 ~~l~~~~~~~~l~~-vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (195)
T PRK13541 5 HQLQFNIEQKNLFD-LSITFLPSA---ITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLG 80 (195)
T ss_pred EEeeEEECCcEEEE-EEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCcC
Confidence 56677776666666 999999999 99999999999999999999998 78999999987532 134667777776
Q ss_pred CCchhhHHHHHHhhccC--c---------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 117 LTDYDTLLENIRGLKEG--K---------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 117 ~~d~~tl~e~L~~L~~g--~---------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
.++..++.+++...... . .... +..+......|+|+.+++..++.++-++.+++.|||...+|.
T Consensus 81 ~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~ 156 (195)
T PRK13541 81 LKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSK 156 (195)
T ss_pred CCccCCHHHHHHHHHHhcccHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 66677888887543211 0 0011 123334466889999999999999999999999999999997
No 178
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=3.9e-15 Score=148.92 Aligned_cols=159 Identities=13% Similarity=0.139 Sum_probs=117.8
Q ss_pred eeeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
.+++++.++. ..+++++|+.+++|+ +++|+||||||||||+++|++++ |..|.|.++|.... .+.++
T Consensus 10 i~~l~~~~~~~~~~~l~~isl~i~~Ge---~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 10 FKNVSFQYQSDASFTLKDVSFNIPKGQ---WTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred EEEEEEEcCCCCCcceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 4677777754 358999999999999 99999999999999999999998 78999999997532 13478
Q ss_pred ccCCCCC-CCchhhHHHHHHhhcc--C--------------cceec-cccccCCCCcCCCeeeeecCccEEEEecceeee
Q 010501 110 GNFDDPR-LTDYDTLLENIRGLKE--G--------------KAVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (509)
Q Consensus 110 ~~fq~p~-~~d~~tl~e~L~~L~~--g--------------~~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~ 171 (509)
+++|+|. .++..++.+++..... + +.+.. +..+......|+|+.+++..+++++.++.+++.
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllL 166 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIIL 166 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 8898874 4555555555533211 0 00111 234555567899999999999999999999999
Q ss_pred ccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCHH
Q 010501 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPE 208 (509)
Q Consensus 172 dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e 208 (509)
|||...+|. ...+.+.++.+++.+ +|.++.
T Consensus 167 DEPt~~LD~-------~~~~~l~~~L~~~~~~~~~tii 197 (269)
T PRK13648 167 DEATSMLDP-------DARQNLLDLVRKVKSEHNITII 197 (269)
T ss_pred eCCcccCCH-------HHHHHHHHHHHHHHHhcCCEEE
Confidence 999999998 345556666666544 355543
No 179
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=3.6e-15 Score=149.51 Aligned_cols=154 Identities=16% Similarity=0.216 Sum_probs=117.6
Q ss_pred eeeeEEEeC--cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g--~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
.+++++.++ ...+++++||.+.+|+ +++|+||||||||||+++|++++ |..|.|.+++.... ++.++
T Consensus 10 ~~nl~~~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 10 VENVSFSYPNSENNALKNVSFEINEGE---YVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEeEEEEcCCCCccceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 467777773 4679999999999999 99999999999999999999998 78999999987532 23478
Q ss_pred ccCCCCC-CCchhhHHHHHHhhcc--C---cc-----------eec-cccccCCCCcCCCeeeeecCccEEEEecceeee
Q 010501 110 GNFDDPR-LTDYDTLLENIRGLKE--G---KA-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (509)
Q Consensus 110 ~~fq~p~-~~d~~tl~e~L~~L~~--g---~~-----------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~ 171 (509)
+++|++. .++..++.+++..... + .. ... +..+......|+|+.+++..+++++.++.+++.
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllL 166 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIF 166 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 8999874 5666788888864211 0 00 011 223445567889999999999999999999999
Q ss_pred ccccCCCCeEEEeecCchHHHHHHHHHHHHHc
Q 010501 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV 203 (509)
Q Consensus 172 dElr~lLDlkIfVd~d~dirLiRRI~RD~~er 203 (509)
|||...+|. ...+.+..+.+++...
T Consensus 167 DEP~~gLD~-------~~~~~l~~~l~~~~~~ 191 (271)
T PRK13632 167 DESTSMLDP-------KGKREIKKIMVDLRKT 191 (271)
T ss_pred eCCcccCCH-------HHHHHHHHHHHHHHHh
Confidence 999999998 3445555555555443
No 180
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=3.5e-15 Score=145.00 Aligned_cols=137 Identities=20% Similarity=0.259 Sum_probs=107.5
Q ss_pred eeeeEEEeCc-EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccccc
Q 010501 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~-~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~ 110 (509)
.+++++.++. ..++++++|.+.+|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+.+++
T Consensus 5 ~~~l~~~~~~~~~~l~~isl~i~~G~---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 5 FENVNFSYDEKKPVLKDINFSIKPGE---TVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred EEEEEEecCCCCccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 4667777764 569999999999999 99999999999999999999998 78999999986432 234788
Q ss_pred cCCCCCCCchhhHHHHHHhhccCc---ce-------ec-------c-----ccccCCCCcCCCeeeeecCccEEEEecce
Q 010501 111 NFDDPRLTDYDTLLENIRGLKEGK---AV-------QV-------P-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~g~---~i-------~~-------P-----~yD~~~~~rsgg~~~~v~~a~VLIVEGi~ 168 (509)
.+|++..++. ++.+++....... .+ .. | ..+......|+|+.+++..+++++-++.+
T Consensus 82 ~~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~l 160 (229)
T cd03254 82 VLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKI 160 (229)
T ss_pred ecCCchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 9999877664 8888876532110 00 00 0 11223467889999999999999999999
Q ss_pred eeeccccCCCCe
Q 010501 169 ALSEKLRPLIDL 180 (509)
Q Consensus 169 aL~dElr~lLDl 180 (509)
++.|||...+|.
T Consensus 161 lllDEP~~~LD~ 172 (229)
T cd03254 161 LILDEATSNIDT 172 (229)
T ss_pred EEEeCccccCCH
Confidence 999999999997
No 181
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.56 E-value=5.5e-15 Score=147.59 Aligned_cols=160 Identities=16% Similarity=0.184 Sum_probs=117.2
Q ss_pred eeeEEEeC---------cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc------
Q 010501 41 DTLSFEKG---------FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------ 104 (509)
Q Consensus 41 ~~lsf~~g---------~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~------ 104 (509)
+++++.++ ...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++....
T Consensus 6 ~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 6 RDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGE---TVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EeEEEEeccCccccccCceEEeeCceeEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 56777664 3679999999999999 99999999999999999999998 78999999986432
Q ss_pred ----cccccccCCCCC--CCchhhHHHHHHhhcc---C--------------cceecc--ccccCCCCcCCCeeeeecCc
Q 010501 105 ----SRIIDGNFDDPR--LTDYDTLLENIRGLKE---G--------------KAVQVP--IYDFKSSSRIGYRTLEVPSS 159 (509)
Q Consensus 105 ----~r~i~~~fq~p~--~~d~~tl~e~L~~L~~---g--------------~~i~~P--~yD~~~~~rsgg~~~~v~~a 159 (509)
.+.+++++|++. .++..++.+++..... + ...... ..+......|+|+.+++..+
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~la 162 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIA 162 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHH
Confidence 134788999873 3445677776642110 0 001111 12344467889999999999
Q ss_pred cEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCHHHH
Q 010501 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEI 210 (509)
Q Consensus 160 ~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e~V 210 (509)
++++.++.+++.|||...+|. .....+.++.+++.+ .|.++.-+
T Consensus 163 ral~~~p~illLDEPt~~LD~-------~~~~~l~~~l~~~~~~~g~tiiiv 207 (265)
T TIGR02769 163 RALAVKPKLIVLDEAVSNLDM-------VLQAVILELLRKLQQAFGTAYLFI 207 (265)
T ss_pred HHHhcCCCEEEEeCCcccCCH-------HHHHHHHHHHHHHHHhcCcEEEEE
Confidence 999999999999999999997 344555566666554 36654333
No 182
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=5.2e-15 Score=152.98 Aligned_cols=151 Identities=16% Similarity=0.206 Sum_probs=115.8
Q ss_pred EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------cccccccCCCCC--
Q 010501 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------SRIIDGNFDDPR-- 116 (509)
Q Consensus 50 ~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----------~r~i~~~fq~p~-- 116 (509)
..++++|+|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.++|.... ++.++++||+|.
T Consensus 28 ~~~l~~vsl~i~~Ge---~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~ 104 (327)
T PRK11308 28 VKALDGVSFTLERGK---TLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGS 104 (327)
T ss_pred eeEEeeeEEEECCCC---EEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhh
Confidence 579999999999999 99999999999999999999998 68899999997432 135789999983
Q ss_pred CCchhhHHHHHHh-hcc--C--------------cceec-c-ccccCCCCcCCCeeeeecCccEEEEecceeeeccccCC
Q 010501 117 LTDYDTLLENIRG-LKE--G--------------KAVQV-P-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (509)
Q Consensus 117 ~~d~~tl~e~L~~-L~~--g--------------~~i~~-P-~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~l 177 (509)
+.+..++.+++.. +.. + ..+.. + .++...+..|+|+.+++..+++++.++.+++.|||+..
T Consensus 105 l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~ 184 (327)
T PRK11308 105 LNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSA 184 (327)
T ss_pred cCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCcc
Confidence 4555566666542 100 0 01112 2 45777789999999999999999999999999999999
Q ss_pred CCeEEEeecCchHHHHHHHHHHHHH-cCCCHHHH
Q 010501 178 IDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEI 210 (509)
Q Consensus 178 LDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e~V 210 (509)
||. .....+.++.+++.+ .|.++.-+
T Consensus 185 LD~-------~~~~~i~~lL~~l~~~~g~til~i 211 (327)
T PRK11308 185 LDV-------SVQAQVLNLMMDLQQELGLSYVFI 211 (327)
T ss_pred CCH-------HHHHHHHHHHHHHHHHcCCEEEEE
Confidence 997 345556666666655 47664433
No 183
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.56 E-value=4.1e-15 Score=143.41 Aligned_cols=152 Identities=14% Similarity=0.090 Sum_probs=116.5
Q ss_pred eeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----------ccccc
Q 010501 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIID 109 (509)
Q Consensus 42 ~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----------~r~i~ 109 (509)
++++.++.+.+ +++|.+.+ + +++|+|+||||||||+++|++++ |..|.|.+++.... .+.++
T Consensus 5 ~l~~~~~~~~~--~vsl~i~~-e---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 78 (214)
T cd03297 5 DIEKRLPDFTL--KIDFDLNE-E---VTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIG 78 (214)
T ss_pred eeeEecCCeee--CceEEEcc-e---eEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEE
Confidence 67778887765 99999999 9 99999999999999999999998 78999999886421 13578
Q ss_pred ccCCCCCCCchhhHHHHHHhhccC-------c-------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccc
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEG-------K-------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g-------~-------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dEl 174 (509)
+++|++..++..++.+++...... . .... ...+......|+|+.+++..+++++.++.+++.|||
T Consensus 79 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 158 (214)
T cd03297 79 LVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEP 158 (214)
T ss_pred EEecCCccCCCCCHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 899999888778888887642211 0 0111 122444567889999999999999999999999999
Q ss_pred cCCCCeEEEeecCchHHHHHHHHHHHHHc-CCC
Q 010501 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQE 206 (509)
Q Consensus 175 r~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t 206 (509)
...+|. ...+.+..+.+++.+. |.+
T Consensus 159 t~~LD~-------~~~~~l~~~l~~~~~~~~~t 184 (214)
T cd03297 159 FSALDR-------ALRLQLLPELKQIKKNLNIP 184 (214)
T ss_pred cccCCH-------HHHHHHHHHHHHHHHHcCcE
Confidence 999997 3455666666666543 544
No 184
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=4.3e-15 Score=149.35 Aligned_cols=163 Identities=15% Similarity=0.167 Sum_probs=122.2
Q ss_pred eeeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---------cccc
Q 010501 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRII 108 (509)
Q Consensus 40 ~~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---------~r~i 108 (509)
.+++++.++ ...+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.+
T Consensus 4 ~~~l~~~~~~~~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 4 TRDLKYSYPDGTEALKGINFKAEKGE---MVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred EEEEEEEeCCCCeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 457777775 4579999999999999 99999999999999999999998 68999999997531 1347
Q ss_pred cccCCCCC-CCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 109 DGNFDDPR-LTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 109 ~~~fq~p~-~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
++++|++. .+...++.+++..... +. .+.. ...+......|+|+.+++..+++++.++.+++
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~lll 160 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIV 160 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 88999874 2233578888753211 00 0111 22344556789999999999999999999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
.|||...+|. ...+.+.++.+.+.+.|.++.-+.|
T Consensus 161 lDEPt~gLD~-------~~~~~l~~~l~~l~~~~~til~vtH 195 (275)
T PRK13639 161 LDEPTSGLDP-------MGASQIMKLLYDLNKEGITIIISTH 195 (275)
T ss_pred EeCCCcCCCH-------HHHHHHHHHHHHHHHCCCEEEEEec
Confidence 9999999998 3455666666676656766544433
No 185
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=99.56 E-value=4.5e-15 Score=145.10 Aligned_cols=136 Identities=18% Similarity=0.294 Sum_probs=106.9
Q ss_pred eeeEEEeC--cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccccc
Q 010501 41 DTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (509)
Q Consensus 41 ~~lsf~~g--~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~ 110 (509)
+++++.++ ...++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.+++
T Consensus 4 ~~l~~~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 4 EHVRFRYKPDGPVILDNISLRIKPGE---VVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred EEEEEecCCCCccceeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 56666664 3569999999999999 99999999999999999999998 78999999986432 235788
Q ss_pred cCCCCCCCchhhHHHHHHhhccCcc---e-------e-------cc-----ccccCCCCcCCCeeeeecCccEEEEecce
Q 010501 111 NFDDPRLTDYDTLLENIRGLKEGKA---V-------Q-------VP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~g~~---i-------~-------~P-----~yD~~~~~rsgg~~~~v~~a~VLIVEGi~ 168 (509)
++|++..++ .++.+++.....+.. + . .| ..+...+..|+|+.+++..+++++.++.+
T Consensus 81 ~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 81 VLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EcCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 999987765 588888764321100 0 0 00 12334467899999999999999999999
Q ss_pred eeeccccCCCCe
Q 010501 169 ALSEKLRPLIDL 180 (509)
Q Consensus 169 aL~dElr~lLDl 180 (509)
++.|||...+|.
T Consensus 160 lllDEP~~~LD~ 171 (237)
T cd03252 160 LIFDEATSALDY 171 (237)
T ss_pred EEEeCCcccCCH
Confidence 999999999998
No 186
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.56 E-value=6.3e-15 Score=159.91 Aligned_cols=164 Identities=15% Similarity=0.100 Sum_probs=128.1
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC---CeeEEEECCccCc--------cccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP---SIAVITMDNYNDS--------SRII 108 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp---~~g~I~~D~y~~~--------~r~i 108 (509)
.+++++.++...+++++||.+.+|+ +++|+||||||||||+++|+++++ ..|.|.++|.... ++.+
T Consensus 8 ~~nl~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 84 (506)
T PRK13549 8 MKNITKTFGGVKALDNVSLKVRAGE---IVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGI 84 (506)
T ss_pred EeeeEEEeCCeEeecceeEEEeCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCe
Confidence 4678888888889999999999999 999999999999999999999984 6899999986432 1347
Q ss_pred cccCCCCCCCchhhHHHHHHhhcc----Cc----c-----------eecc-ccccCCCCcCCCeeeeecCccEEEEecce
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKE----GK----A-----------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~----g~----~-----------i~~P-~yD~~~~~rsgg~~~~v~~a~VLIVEGi~ 168 (509)
++++|++..++..++.+++..... +. . +..+ ..+...+..|+|+.+++..+++++.++.+
T Consensus 85 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~l 164 (506)
T PRK13549 85 AIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARL 164 (506)
T ss_pred EEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 899999988888899998865321 00 0 1111 22444567899999999999999999999
Q ss_pred eeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHH
Q 010501 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (509)
Q Consensus 169 aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~ 213 (509)
+++|||.+.+|. .....+..+.+++...|.++.-+.|.
T Consensus 165 llLDEPt~~LD~-------~~~~~l~~~l~~l~~~~~tvi~~tH~ 202 (506)
T PRK13549 165 LILDEPTASLTE-------SETAVLLDIIRDLKAHGIACIYISHK 202 (506)
T ss_pred EEEeCCCCCCCH-------HHHHHHHHHHHHHHHCCCEEEEEeCc
Confidence 999999999997 45566667777776667665444443
No 187
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=99.55 E-value=6.5e-15 Score=146.50 Aligned_cols=137 Identities=19% Similarity=0.163 Sum_probs=109.4
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC------CCeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll------p~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++....
T Consensus 16 ~~~l~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~ 92 (260)
T PRK10744 16 VRNLNFYYGKFHALKNINLDIAKNQ---VTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALL 92 (260)
T ss_pred EEEEEEEeCCeEEeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHH
Confidence 3677888877789999999999999 99999999999999999999997 26899999986531
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc---Cc--------------ceec-----cccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE---GK--------------AVQV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~---g~--------------~i~~-----P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++..++ .++.+++..... +. .... ...+......|+|+.+++..++++
T Consensus 93 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 171 (260)
T PRK10744 93 RAKVGMVFQKPTPFP-MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGI 171 (260)
T ss_pred hcceEEEecCCccCc-CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHH
Confidence 235788999988777 688888864221 10 0000 012344567889999999999999
Q ss_pred EEecceeeeccccCCCCe
Q 010501 163 IIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDl 180 (509)
+.++.+++.|||...+|.
T Consensus 172 ~~~p~lllLDEPt~~LD~ 189 (260)
T PRK10744 172 AIRPEVLLLDEPCSALDP 189 (260)
T ss_pred HCCCCEEEEcCCCccCCH
Confidence 999999999999999997
No 188
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=9.5e-15 Score=144.41 Aligned_cols=152 Identities=14% Similarity=0.184 Sum_probs=117.0
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp------~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...++++++|.+++|+ +++|+|+||||||||+++|+++++ ..|.|.+++....
T Consensus 7 ~~nl~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 83 (252)
T PRK14256 7 LEQLNVHFGKNHAVKDVSMDFPENS---VTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSI 83 (252)
T ss_pred EEEEEEEeCCeeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHh
Confidence 4678888877889999999999999 999999999999999999999973 4799999997532
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhc-c-C----c----c-------eec-----cccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLK-E-G----K----A-------VQV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~-~-g----~----~-------i~~-----P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++..++..++.+++.... . + . . ... ...+......|+|+.+++..++++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral 163 (252)
T PRK14256 84 RRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTI 163 (252)
T ss_pred hccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHH
Confidence 234788999998888888888886421 0 1 0 0 000 012233456788999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHH
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ 201 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~ 201 (509)
+.++.+++.|||...+|. ...+.+.++.+.+.
T Consensus 164 ~~~p~llllDEP~~gLD~-------~~~~~l~~~l~~~~ 195 (252)
T PRK14256 164 AVKPEVILMDEPASALDP-------ISTLKIEELIEELK 195 (252)
T ss_pred hcCCCEEEEcCCcccCCH-------HHHHHHHHHHHHHH
Confidence 999999999999999998 34445555555554
No 189
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=8.4e-15 Score=146.82 Aligned_cols=137 Identities=18% Similarity=0.185 Sum_probs=109.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC------CCeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll------p~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...+|+++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++....
T Consensus 16 i~nl~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~ 92 (269)
T PRK14259 16 LQNVTISYGTFEAVKNVFCDIPRGK---VTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEV 92 (269)
T ss_pred EEeEEEEECCEEEEcceEEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHH
Confidence 4678888888889999999999999 99999999999999999999986 37899999986431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--Cc------c-------eec-----cccccCCCCcCCCeeeeecCccEEEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK------A-------VQV-----PIYDFKSSSRIGYRTLEVPSSRIVII 164 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g~------~-------i~~-----P~yD~~~~~rsgg~~~~v~~a~VLIV 164 (509)
.+.+++++|++..++ .++.+++..... +. . ... ...+......|+|+.+++..+++++.
T Consensus 93 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 171 (269)
T PRK14259 93 RRRIGMVFQQPNPFP-KSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAI 171 (269)
T ss_pred hhceEEEccCCccch-hhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhc
Confidence 134789999998777 488888864321 10 0 000 01234446688999999999999999
Q ss_pred ecceeeeccccCCCCe
Q 010501 165 EGIYALSEKLRPLIDL 180 (509)
Q Consensus 165 EGi~aL~dElr~lLDl 180 (509)
++.+++.|||...+|.
T Consensus 172 ~p~lllLDEPt~gLD~ 187 (269)
T PRK14259 172 EPEVILMDEPCSALDP 187 (269)
T ss_pred CCCEEEEcCCCccCCH
Confidence 9999999999999997
No 190
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=5.4e-15 Score=146.30 Aligned_cols=150 Identities=17% Similarity=0.193 Sum_probs=115.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p-----~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...+++++||.+++|+ +++|+|+||||||||+++|++++ | ..|.|.+++....
T Consensus 10 ~~~l~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (254)
T PRK14273 10 TENLNLFYTDFKALNNINIKILKNS---ITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILEL 86 (254)
T ss_pred EeeeEEEeCCceeecceeeEEcCCC---EEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHH
Confidence 4677887777789999999999999 99999999999999999999998 3 3799999886421
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--Cc----c-----------eec-----cccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK----A-----------VQV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g~----~-----------i~~-----P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++..+. .++.+++..... +. . +.. ..++......|+|+.+++..++++
T Consensus 87 ~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral 165 (254)
T PRK14273 87 RRKIGMVFQTPNPFL-MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTL 165 (254)
T ss_pred hhceEEEeecccccc-CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 234788999988774 788888864221 10 0 000 124555667899999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHH
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDI 200 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~ 200 (509)
+.++.++++|||...+|. ...+.+..+.+.+
T Consensus 166 ~~~p~lllLDEPt~~LD~-------~~~~~l~~~l~~~ 196 (254)
T PRK14273 166 AIEPNVILMDEPTSALDP-------ISTGKIEELIINL 196 (254)
T ss_pred HcCCCEEEEeCCCcccCH-------HHHHHHHHHHHHH
Confidence 999999999999999997 2344444444444
No 191
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=7.3e-15 Score=146.80 Aligned_cols=151 Identities=19% Similarity=0.224 Sum_probs=115.4
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC------CCeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll------p~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|+++. |..|.|.+++....
T Consensus 24 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 100 (268)
T PRK14248 24 VKDLSIYYGEKRAVNDISMDIEKHA---VTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNL 100 (268)
T ss_pred EEEEEEEeCCceeeeceEEEEcCCC---EEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHH
Confidence 4678888887889999999999999 99999999999999999999975 37899999986431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--C---cc-----ee-------c-----cccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G---KA-----VQ-------V-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g---~~-----i~-------~-----P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++..++. ++.+++..... + .. +. . ...+...+..|+|+.+++..++++
T Consensus 101 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral 179 (268)
T PRK14248 101 RREIGMVFQKPNPFPK-SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTL 179 (268)
T ss_pred hccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 2357899999887764 78888764211 0 00 00 0 112344567899999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHH
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ 201 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~ 201 (509)
+.++.+++.|||...+|. .....+..+.+++.
T Consensus 180 ~~~p~lllLDEPt~~LD~-------~~~~~l~~~l~~~~ 211 (268)
T PRK14248 180 AMKPAVLLLDEPASALDP-------ISNAKIEELITELK 211 (268)
T ss_pred hCCCCEEEEcCCCcccCH-------HHHHHHHHHHHHHh
Confidence 999999999999999997 33444555555543
No 192
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=99.55 E-value=7.1e-15 Score=145.96 Aligned_cols=158 Identities=15% Similarity=0.091 Sum_probs=113.9
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-----Cc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN-----DS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~-----~~--------- 104 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++.. ..
T Consensus 9 ~~~l~~~~~~~~il~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~ 85 (258)
T PRK11701 9 VRGLTKLYGPRKGCRDVSFDLYPGE---VLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRR 85 (258)
T ss_pred EeeeEEEcCCceeeeeeeEEEeCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHH
Confidence 4677877777789999999999999 99999999999999999999998 789999999864 21
Q ss_pred --cccccccCCCCC--CCchhhHHHHHHh----h---------------ccCcceeccccccCCCCcCCCeeeeecCccE
Q 010501 105 --SRIIDGNFDDPR--LTDYDTLLENIRG----L---------------KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRI 161 (509)
Q Consensus 105 --~r~i~~~fq~p~--~~d~~tl~e~L~~----L---------------~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~V 161 (509)
.+.+++++|++. .+...++.+++.. . .+.-.+..+..+......|+|+.+++..+++
T Consensus 86 ~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~lara 165 (258)
T PRK11701 86 LLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARN 165 (258)
T ss_pred HhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHH
Confidence 124678888874 2222333333321 0 0000111113345567789999999999999
Q ss_pred EEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCH
Q 010501 162 VIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEP 207 (509)
Q Consensus 162 LIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~ 207 (509)
++.++.+++.|||...+|. ...+.+..+.+.+... |.++
T Consensus 166 l~~~p~llllDEPt~~LD~-------~~~~~l~~~l~~~~~~~~~ti 205 (258)
T PRK11701 166 LVTHPRLVFMDEPTGGLDV-------SVQARLLDLLRGLVRELGLAV 205 (258)
T ss_pred HhcCCCEEEEcCCcccCCH-------HHHHHHHHHHHHHHHhcCcEE
Confidence 9999999999999999997 3344555555555432 5553
No 193
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=5e-15 Score=149.59 Aligned_cols=163 Identities=13% Similarity=0.153 Sum_probs=122.5
Q ss_pred eeeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---------cccc
Q 010501 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRII 108 (509)
Q Consensus 40 ~~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---------~r~i 108 (509)
.+++++.++ ...+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.+
T Consensus 8 ~~~l~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~i 84 (283)
T PRK13636 8 VEELNYNYSDGTHALKGININIKKGE---VTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESV 84 (283)
T ss_pred EEeEEEEeCCCCeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhE
Confidence 467888885 5779999999999999 99999999999999999999998 78999999997531 1347
Q ss_pred cccCCCCC-CCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 109 DGNFDDPR-LTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 109 ~~~fq~p~-~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
++++|++. .+...++.+++..... +. .... ...+......|+|+.+++..+++++.++.+++
T Consensus 85 g~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLi 164 (283)
T PRK13636 85 GMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLV 164 (283)
T ss_pred EEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 89999874 2334688888864211 10 0011 12344456788999999999999999999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCHHHHHH
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIH 212 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~e~Vi~ 212 (509)
.|||...+|. .....+..+.+.+.+. |.++.-+.|
T Consensus 165 lDEPt~gLD~-------~~~~~l~~~l~~l~~~~g~tillvsH 200 (283)
T PRK13636 165 LDEPTAGLDP-------MGVSEIMKLLVEMQKELGLTIIIATH 200 (283)
T ss_pred EeCCccCCCH-------HHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 9999999998 3455566666666543 666443333
No 194
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=99.55 E-value=9.2e-15 Score=145.15 Aligned_cols=151 Identities=16% Similarity=0.190 Sum_probs=117.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p-----~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...+|++++|.+.+|+ +++|+|+||||||||+++|++++ | ..|.|.+++....
T Consensus 7 i~~v~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 7 VKDLNIYYGSFHAVEDVNLNIEPRS---VTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred EeeEEEEECCEeeeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 4678888877789999999999999 99999999999999999999998 3 5899999986431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--C----cc-----------eec-----cccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G----KA-----------VQV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g----~~-----------i~~-----P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++..++..++.+++..... + .. +.. ...+......|+|+.+++..++++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAI 163 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 1347889999888887888888764211 0 00 000 122344467889999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHH
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDI 200 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~ 200 (509)
+.++.+++.|||...+|. .....+..+.+.+
T Consensus 164 ~~~p~llllDEPt~~LD~-------~~~~~l~~~l~~~ 194 (258)
T PRK14241 164 AVEPDVLLMDEPCSALDP-------ISTLAIEDLINEL 194 (258)
T ss_pred hcCCCEEEEcCCCccCCH-------HHHHHHHHHHHHH
Confidence 999999999999999997 3444555555554
No 195
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=7.6e-15 Score=144.76 Aligned_cols=138 Identities=17% Similarity=0.213 Sum_probs=110.3
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CC-----eeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~-----~g~I~~D~y~~~--------- 104 (509)
.+++++.++...+++++||.+.+|+ +++|+|+||||||||+++|++.+ |. .|.|.+++....
T Consensus 7 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 7 AQDVNIYYGDKQAVKNVNLDVQRGT---VNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EeeeEEEECCEEeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 4678888877889999999999999 99999999999999999999998 43 799999986432
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--C---cc------------eec-----cccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G---KA------------VQV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g---~~------------i~~-----P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++..++..++.+++..... + .. ... ...+...+..|+|+.+++..++++
T Consensus 84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14272 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARAL 163 (252)
T ss_pred hceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 1347889999988887888888864211 1 00 000 122344567889999999999999
Q ss_pred EEecceeeeccccCCCCe
Q 010501 163 IIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDl 180 (509)
+.++.+++.|||...+|.
T Consensus 164 ~~~p~llllDEP~~~LD~ 181 (252)
T PRK14272 164 AVEPEILLMDEPTSALDP 181 (252)
T ss_pred hcCCCEEEEeCCCccCCH
Confidence 999999999999999997
No 196
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.55 E-value=7e-15 Score=146.32 Aligned_cols=155 Identities=19% Similarity=0.146 Sum_probs=114.8
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~ 118 (509)
.+++++.++...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++ ...+++++|++..+
T Consensus 7 ~~~l~~~~~~~~vl~~vs~~i~~Ge---~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~----~~~i~~v~q~~~~~ 79 (251)
T PRK09544 7 LENVSVSFGQRRVLSDVSLELKPGK---ILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG----KLRIGYVPQKLYLD 79 (251)
T ss_pred EeceEEEECCceEEEeEEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC----ccCEEEeccccccc
Confidence 4677888877789999999999999 99999999999999999999998 7899999876 23578888887654
Q ss_pred ch--hhHHHHHHhhcc---C------cceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeec
Q 010501 119 DY--DTLLENIRGLKE---G------KAVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (509)
Q Consensus 119 d~--~tl~e~L~~L~~---g------~~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~ 186 (509)
+. .++.+++..... . ..+.. +..+......|+|+.+++..+++++.++.+++.|||.+.+|.
T Consensus 80 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~------ 153 (251)
T PRK09544 80 TTLPLTVNRFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV------ 153 (251)
T ss_pred cccChhHHHHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH------
Confidence 43 245554422100 0 00111 123444567889999999999999999999999999999997
Q ss_pred CchHHHHHHHHHHHHHc-CCCHH
Q 010501 187 GVHFDLVKRVFRDIQRV-GQEPE 208 (509)
Q Consensus 187 d~dirLiRRI~RD~~er-G~t~e 208 (509)
.....+.++.+.+... |.++.
T Consensus 154 -~~~~~l~~~L~~~~~~~g~tii 175 (251)
T PRK09544 154 -NGQVALYDLIDQLRRELDCAVL 175 (251)
T ss_pred -HHHHHHHHHHHHHHHhcCCEEE
Confidence 3445555666665543 65543
No 197
>PLN02796 D-glycerate 3-kinase
Probab=99.55 E-value=4.5e-14 Score=146.71 Aligned_cols=175 Identities=18% Similarity=0.265 Sum_probs=122.6
Q ss_pred EEeeeeceee---ecCC--ccEEEEEECCCCCcHHHHHHHHHhhCC----CeeEEEECCccCcccc-ccccCC-------
Q 010501 51 IVIRACQLLA---QKNH--GIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSRI-IDGNFD------- 113 (509)
Q Consensus 51 ~iLk~IsL~i---~~Ge--~~iIIgI~GpSGSGKTTLar~L~~llp----~~g~I~~D~y~~~~r~-i~~~fq------- 113 (509)
.+++.+++.+ .+|+ +|++|||+|++|||||||++.|.+.+. .++.|++|+|+..... .....+
T Consensus 80 ~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~q~P~n~Ll 159 (347)
T PLN02796 80 WCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAEANPGNALL 159 (347)
T ss_pred HHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHhhCcchhhh
Confidence 4567777765 3333 589999999999999999999999983 3799999999865321 112222
Q ss_pred ----CCCCCchhhHHHHHHhhc----cCcceeccccccCCCC----cCCCe--eeeecCccEEEEecceeee-cc-----
Q 010501 114 ----DPRLTDYDTLLENIRGLK----EGKAVQVPIYDFKSSS----RIGYR--TLEVPSSRIVIIEGIYALS-EK----- 173 (509)
Q Consensus 114 ----~p~~~d~~tl~e~L~~L~----~g~~i~~P~yD~~~~~----rsgg~--~~~v~~a~VLIVEGi~aL~-dE----- 173 (509)
.|..+|...+.+++..|+ .+..+.+|.||++.+. |...+ .....+.+|||+||+++.. +.
T Consensus 160 ~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l 239 (347)
T PLN02796 160 ELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAV 239 (347)
T ss_pred hcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHh
Confidence 255788888999998887 5788999999999865 43221 2334789999999999975 21
Q ss_pred --------------------ccCCCCeEEEeecCc-hHHHHHHHHHHHH-----HcCCCHHHHHHHHHHhhhhHHHHhh
Q 010501 174 --------------------LRPLIDLRVSVTGGV-HFDLVKRVFRDIQ-----RVGQEPEEIIHQISETVYPMYKAFI 226 (509)
Q Consensus 174 --------------------lr~lLDlkIfVd~d~-dirLiRRI~RD~~-----erG~t~e~Vi~~y~~~V~P~~~~fI 226 (509)
+...+|..|.+.++. +.-..+|+....+ ..|++.++| .+|-++.+|+|+.|.
T Consensus 240 ~~~~~~l~~vN~~L~~y~~~w~~~~d~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gMsde~v-~~FV~~~mP~y~~y~ 317 (347)
T PLN02796 240 KAVDPQLEVVNKNLEAYYDAWDKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGMSDEEV-ADFVSRYMPAYKAYL 317 (347)
T ss_pred hccChhHHHHHHHHHHHHHHHHHhhceEEEEeCCCchHHHHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHHHHHHHH
Confidence 112578888887753 3333444443332 235677775 557778899999884
No 198
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.55 E-value=8.8e-15 Score=144.55 Aligned_cols=150 Identities=15% Similarity=0.183 Sum_probs=115.4
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CC-----eeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-----IAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~-----~g~I~~D~y~~~--------- 104 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||++.|++++ |. .|.|.+++....
T Consensus 7 ~~~l~~~~~~~~il~~~s~~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 83 (251)
T PRK14249 7 IRGVNFFYHKHQVLKNINMDFPERQ---ITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNL 83 (251)
T ss_pred EEEEEEEECCeeEecceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHh
Confidence 3678888877889999999999999 99999999999999999999998 44 599999886431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--Ccc---------------eec-----cccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GKA---------------VQV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g~~---------------i~~-----P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++..++. ++.+++..... +.. ... ...+......|+|+.+++..++++
T Consensus 84 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 162 (251)
T PRK14249 84 RKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVL 162 (251)
T ss_pred hceEEEEecCCccCcC-cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 2357899999988764 88888864221 100 000 112344566889999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHH
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDI 200 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~ 200 (509)
+.++.+++.|||...+|. .....+.++.+++
T Consensus 163 ~~~p~lllLDEPt~~LD~-------~~~~~l~~~l~~~ 193 (251)
T PRK14249 163 AIEPEVILMDEPCSALDP-------VSTMRIEELMQEL 193 (251)
T ss_pred hcCCCEEEEeCCCccCCH-------HHHHHHHHHHHHH
Confidence 999999999999999998 3344455555554
No 199
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.55 E-value=7.7e-15 Score=158.80 Aligned_cols=164 Identities=16% Similarity=0.099 Sum_probs=127.6
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC---CeeEEEECCccCc--------cccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP---SIAVITMDNYNDS--------SRII 108 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp---~~g~I~~D~y~~~--------~r~i 108 (509)
.+++++.++...+++++||.+.+|+ ++||+||||||||||+++|+++++ ..|.|.+++.... .+.+
T Consensus 4 i~~l~~~~~~~~il~~isl~i~~Ge---~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 4 MKGIVKTFGGVKALDGIDLEVRPGE---CVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred EEeEEEEeCCeEeecceEEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 3678888887889999999999999 999999999999999999999984 5899999986432 1347
Q ss_pred cccCCCCCCCchhhHHHHHHhhcc----C-----cc-----------eecccc--ccCCCCcCCCeeeeecCccEEEEec
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKE----G-----KA-----------VQVPIY--DFKSSSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~----g-----~~-----------i~~P~y--D~~~~~rsgg~~~~v~~a~VLIVEG 166 (509)
++++|++..++..++.+++..... + .. ...+.+ +...+..|+|+.+++..+++++.++
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p 160 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQA 160 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCC
Confidence 899999888888888888764211 0 00 011111 2335678999999999999999999
Q ss_pred ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHH
Q 010501 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (509)
Q Consensus 167 i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~ 213 (509)
.++++|||.+.+|. .....+..+.+++.+.|.++.-+.|.
T Consensus 161 ~lllLDEPt~~LD~-------~~~~~l~~~l~~l~~~g~tviiitHd 200 (500)
T TIGR02633 161 RLLILDEPSSSLTE-------KETEILLDIIRDLKAHGVACVYISHK 200 (500)
T ss_pred CEEEEeCCCCCCCH-------HHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 99999999999998 45667777777777777765444443
No 200
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.55 E-value=6.7e-15 Score=151.75 Aligned_cols=163 Identities=15% Similarity=0.127 Sum_probs=123.4
Q ss_pred eeeeEEEeCc-----EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~-----~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------- 104 (509)
.++++|.++. ..+|+++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.++|....
T Consensus 24 ~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge---~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 24 VKNLYCVFDEKQENELVALNNISYTFEKNK---IYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred EEeEEEEeCCCCcccccceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 5778887753 369999999999999 99999999999999999999998 78999999975321
Q ss_pred --------------cccccccCCCCC--CCchhhHHHHHHhhcc--Cc--------------ceecc--ccccCCCCcCC
Q 010501 105 --------------SRIIDGNFDDPR--LTDYDTLLENIRGLKE--GK--------------AVQVP--IYDFKSSSRIG 150 (509)
Q Consensus 105 --------------~r~i~~~fq~p~--~~d~~tl~e~L~~L~~--g~--------------~i~~P--~yD~~~~~rsg 150 (509)
++.++++||+|. .+. .++.+++..... +. .+..+ ..+......|+
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSg 179 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSG 179 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCH
Confidence 134788999884 443 488888754211 10 01122 23444567899
Q ss_pred CeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHH
Q 010501 151 YRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (509)
Q Consensus 151 g~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~ 213 (509)
|+.+++..+++++.++.+++.|||...+|. ...+.+..+.+++.++|.++.-+.|+
T Consensus 180 GqkqRvaiAraL~~~p~iLLLDEPtsgLD~-------~~~~~l~~~L~~l~~~g~TiiivtHd 235 (320)
T PRK13631 180 GQKRRVAIAGILAIQPEILIFDEPTAGLDP-------KGEHEMMQLILDAKANNKTVFVITHT 235 (320)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccCCCH-------HHHHHHHHHHHHHHHCCCEEEEEecC
Confidence 999999999999999999999999999998 45666667777776677775444443
No 201
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.55 E-value=7.3e-15 Score=142.43 Aligned_cols=157 Identities=18% Similarity=0.165 Sum_probs=117.7
Q ss_pred eeeEEEeCc----EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------c
Q 010501 41 DTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------S 105 (509)
Q Consensus 41 ~~lsf~~g~----~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----------~ 105 (509)
+++++.++. ..+++++||.+++|+ +++|+|+||||||||+++|++.+ |..|.|.+++.... .
T Consensus 5 ~~l~~~~~~~~~~~~il~~vs~~i~~G~---~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 5 RNLNHYYGHGSLRKQVLFDINLEINPGE---IVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEccCCCcceeEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 566776653 679999999999999 99999999999999999999998 68999999987432 1
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhcc-Ccc----------------eec-cccccCCCCcCCCeeeeecCccEEEEecc
Q 010501 106 RIIDGNFDDPRLTDYDTLLENIRGLKE-GKA----------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 106 r~i~~~fq~p~~~d~~tl~e~L~~L~~-g~~----------------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi 167 (509)
+.+++++|++..++..++.+++..... ... +.. +..+......|+|+.+++..++.++.++.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~ 161 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPK 161 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence 357889999988887888888764321 000 001 22233445678899999999999999999
Q ss_pred eeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCH
Q 010501 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (509)
Q Consensus 168 ~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~ 207 (509)
+++.|||...+|. .....+..+.+++.. .|.++
T Consensus 162 illlDEP~~~LD~-------~~~~~l~~~l~~~~~~~~~ti 195 (220)
T TIGR02982 162 LVLADEPTAALDS-------KSGRDVVELMQKLAREQGCTI 195 (220)
T ss_pred EEEEeCCCCcCCH-------HHHHHHHHHHHHHHHHcCCEE
Confidence 9999999999997 233444444444433 34443
No 202
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.2e-14 Score=144.40 Aligned_cols=137 Identities=16% Similarity=0.184 Sum_probs=109.0
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp------~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...++++++|.+++|+ +++|+|+||||||||+++|++.++ ..|.|.++|....
T Consensus 15 i~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 91 (259)
T PRK14274 15 INGMNLWYGQHHALKNINLSIPENE---VTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVEL 91 (259)
T ss_pred EeeEEEEECCeeeEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHH
Confidence 4678888887889999999999999 999999999999999999999873 4899999987532
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--C----c-----------ceec-----cccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G----K-----------AVQV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g----~-----------~i~~-----P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++..++. ++.+++..... + . .... ...+......|+|+.+++..++++
T Consensus 92 ~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral 170 (259)
T PRK14274 92 RKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARAL 170 (259)
T ss_pred hhceEEEecCCccccc-CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 1347889999888774 88888754221 1 0 0001 012344456789999999999999
Q ss_pred EEecceeeeccccCCCCe
Q 010501 163 IIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDl 180 (509)
+.++.+++.|||...+|.
T Consensus 171 ~~~p~llllDEPt~~LD~ 188 (259)
T PRK14274 171 ATNPDVLLMDEPTSALDP 188 (259)
T ss_pred hcCCCEEEEcCCcccCCH
Confidence 999999999999999998
No 203
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.54 E-value=1.1e-14 Score=140.61 Aligned_cols=155 Identities=19% Similarity=0.242 Sum_probs=116.5
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCCC
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq~ 114 (509)
+++++.++. ++.+++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.+++++|+
T Consensus 4 ~~l~~~~~~--~~~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (213)
T TIGR01277 4 DKVRYEYEH--LPMEFDLNVADGE---IVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78 (213)
T ss_pred EeeeEEeCC--cceeeEEEEeCCc---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEecc
Confidence 566666642 4679999999999 99999999999999999999998 78999999987432 2457899999
Q ss_pred CCCCchhhHHHHHHhh-ccC-c-------c-------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCC
Q 010501 115 PRLTDYDTLLENIRGL-KEG-K-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (509)
Q Consensus 115 p~~~d~~tl~e~L~~L-~~g-~-------~-------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~l 177 (509)
+..++..++.+++... ... . . ... ...+......|+|+.+++..++.++.++.+++.|||...
T Consensus 79 ~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~ 158 (213)
T TIGR01277 79 NNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSA 158 (213)
T ss_pred CccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCcc
Confidence 9888888898888642 110 0 0 011 122444567889999999999999999999999999999
Q ss_pred CCeEEEeecCchHHHHHHHHHHHHH-cCCCH
Q 010501 178 IDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (509)
Q Consensus 178 LDlkIfVd~d~dirLiRRI~RD~~e-rG~t~ 207 (509)
+|. ...+.+..+.+.+.. .|.++
T Consensus 159 LD~-------~~~~~~~~~l~~~~~~~~~ti 182 (213)
T TIGR01277 159 LDP-------LLREEMLALVKQLCSERQRTL 182 (213)
T ss_pred CCH-------HHHHHHHHHHHHHHHhcCCEE
Confidence 998 344455555555543 35443
No 204
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=9.2e-15 Score=151.00 Aligned_cols=158 Identities=18% Similarity=0.231 Sum_probs=116.9
Q ss_pred eeeEEEeCc----EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC-----CeeEEEECCccCcc------
Q 010501 41 DTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-----SIAVITMDNYNDSS------ 105 (509)
Q Consensus 41 ~~lsf~~g~----~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp-----~~g~I~~D~y~~~~------ 105 (509)
+++++.++. ..+|++|||.+.+|+ ++||+|+||||||||+++|+++++ ..|.|.++|.....
T Consensus 7 ~~l~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 7 DKLSVHFGDESAPFRAVDRISYSVKQGE---VVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred eCeEEEECCCCccEEEEeeeEEEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 456665544 579999999999999 999999999999999999999983 67999999974321
Q ss_pred -----ccccccCCCCC--CCchhhHHHHHHh-hcc--C--------------cceecc----ccccCCCCcCCCeeeeec
Q 010501 106 -----RIIDGNFDDPR--LTDYDTLLENIRG-LKE--G--------------KAVQVP----IYDFKSSSRIGYRTLEVP 157 (509)
Q Consensus 106 -----r~i~~~fq~p~--~~d~~tl~e~L~~-L~~--g--------------~~i~~P----~yD~~~~~rsgg~~~~v~ 157 (509)
+.++++||+|. +.+..++.+++.. +.. + +.+..+ ..+...++.|+|+.+++.
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~ 163 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVM 163 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHH
Confidence 24789999984 4555555544432 110 0 011222 235566789999999999
Q ss_pred CccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCHH
Q 010501 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPE 208 (509)
Q Consensus 158 ~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e 208 (509)
.++.++.++.+++.|||+..+|. .....+..+.+++.+ .|.++.
T Consensus 164 iArAL~~~P~llilDEPts~LD~-------~~~~~il~lL~~l~~~~g~til 208 (326)
T PRK11022 164 IAMAIACRPKLLIADEPTTALDV-------TIQAQIIELLLELQQKENMALV 208 (326)
T ss_pred HHHHHHhCCCEEEEeCCCCCCCH-------HHHHHHHHHHHHHHHhcCCEEE
Confidence 99999999999999999999998 334556666666654 576643
No 205
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.2e-14 Score=143.41 Aligned_cols=137 Identities=18% Similarity=0.167 Sum_probs=109.1
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC---C---CeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll---p---~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|+++. | ..|.|.+++....
T Consensus 8 ~~~l~~~~~~~~~l~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14239 8 VSDLSVYYNKKKALNSVSLDFYPNE---ITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDL 84 (252)
T ss_pred EEeeEEEECCeeeeeeeeEEEcCCc---EEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhh
Confidence 4678888877789999999999999 99999999999999999999984 4 3899999986431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--C----cce-----------ec-----cccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G----KAV-----------QV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g----~~i-----------~~-----P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++..++ .++.+++..... + ... .. ...+...+..|+|+.+++..++++
T Consensus 85 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 163 (252)
T PRK14239 85 RKEIGMVFQQPNPFP-MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVL 163 (252)
T ss_pred hhcEEEEecCCccCc-CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 235788999998877 788888864211 1 000 00 112344567889999999999999
Q ss_pred EEecceeeeccccCCCCe
Q 010501 163 IIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDl 180 (509)
+.++.+++.|||...+|.
T Consensus 164 ~~~p~llllDEPt~~LD~ 181 (252)
T PRK14239 164 ATSPKIILLDEPTSALDP 181 (252)
T ss_pred hcCCCEEEEcCCccccCH
Confidence 999999999999999997
No 206
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1e-14 Score=150.78 Aligned_cols=158 Identities=11% Similarity=0.158 Sum_probs=118.3
Q ss_pred eeeEEEe----CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC-----CeeEEEECCccCcc------
Q 010501 41 DTLSFEK----GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-----SIAVITMDNYNDSS------ 105 (509)
Q Consensus 41 ~~lsf~~----g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp-----~~g~I~~D~y~~~~------ 105 (509)
+++++.+ +...+++++||.+.+|+ ++||+|+||||||||+++|+++++ ..|.|.++|.....
T Consensus 7 ~~l~~~y~~~~~~~~~l~~vsl~i~~Ge---~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 7 RNLTIEFKTSDGWVKAVDRVSMTLTEGE---IRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred eeeEEEEeCCCCCEEEEeeeEEEECCCC---EEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 5666665 45679999999999999 999999999999999999999983 67999999874321
Q ss_pred -----ccccccCCCCC--CCchhhHHHHHHhh-c----cC-----------------cceecc----ccccCCCCcCCCe
Q 010501 106 -----RIIDGNFDDPR--LTDYDTLLENIRGL-K----EG-----------------KAVQVP----IYDFKSSSRIGYR 152 (509)
Q Consensus 106 -----r~i~~~fq~p~--~~d~~tl~e~L~~L-~----~g-----------------~~i~~P----~yD~~~~~rsgg~ 152 (509)
+.++++||+|. +.+..++.+++... . .+ +.+..+ ..+...++.|+|+
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~ 163 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGE 163 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHH
Confidence 25789999986 34556666666431 0 00 001111 1245567889999
Q ss_pred eeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCHH
Q 010501 153 TLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPE 208 (509)
Q Consensus 153 ~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e 208 (509)
.+++..+++++.++.+++.|||...||.. ..+.+..+.+++.+ .|.++.
T Consensus 164 ~QRv~iArAL~~~P~llilDEPts~LD~~-------~~~~i~~lL~~l~~~~g~tii 213 (330)
T PRK15093 164 CQKVMIAIALANQPRLLIADEPTNAMEPT-------TQAQIFRLLTRLNQNNNTTIL 213 (330)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCCcCCHH-------HHHHHHHHHHHHHHhcCCEEE
Confidence 99999999999999999999999999983 34556666666665 476643
No 207
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.54 E-value=1.1e-14 Score=135.64 Aligned_cols=131 Identities=13% Similarity=0.121 Sum_probs=97.8
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~ 118 (509)
.+++++.++...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++......
T Consensus 3 ~~~l~~~~~~~~vl~~i~~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~------------ 67 (163)
T cd03216 3 LRGITKRFGGVKALDGVSLSVRRGE---VHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFA------------ 67 (163)
T ss_pred EEEEEEEECCeEEEeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcC------------
Confidence 3578888877889999999999999 99999999999999999999998 7899999987532210
Q ss_pred chhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHH
Q 010501 119 DYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFR 198 (509)
Q Consensus 119 d~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~R 198 (509)
+. .+.. .. .....+ +.|+|+.+++..+++++.++.+++.|||...+|. ...+.+..+.+
T Consensus 68 ~~---~~~~---~~-~i~~~~-------qLS~G~~qrl~laral~~~p~illlDEP~~~LD~-------~~~~~l~~~l~ 126 (163)
T cd03216 68 SP---RDAR---RA-GIAMVY-------QLSVGERQMVEIARALARNARLLILDEPTAALTP-------AEVERLFKVIR 126 (163)
T ss_pred CH---HHHH---hc-CeEEEE-------ecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCH-------HHHHHHHHHHH
Confidence 00 0000 00 000011 1788899999999999999999999999999997 34455555555
Q ss_pred HHHHcCCC
Q 010501 199 DIQRVGQE 206 (509)
Q Consensus 199 D~~erG~t 206 (509)
.+.++|.+
T Consensus 127 ~~~~~~~t 134 (163)
T cd03216 127 RLRAQGVA 134 (163)
T ss_pred HHHHCCCE
Confidence 55444544
No 208
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=99.54 E-value=8.8e-15 Score=143.12 Aligned_cols=154 Identities=21% Similarity=0.271 Sum_probs=114.7
Q ss_pred eeeEEEeCc---EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 41 DTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 41 ~~lsf~~g~---~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
+++++.++. ..++++++|.+++|+ +++|+|+||||||||+++|++.+ |..|.|.+++.... .+.++
T Consensus 4 ~~l~~~~~~~~~~~~l~~i~~~i~~Ge---~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 4 KNVSFRYPSRPDVPILKGLSLTIPPGK---TVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred EEEEEecCCCCCccceeceEEEecCCC---EEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 566666642 469999999999999 99999999999999999999998 78999999986422 13478
Q ss_pred ccCCCCCCCchhhHHHHHHhhccCc---c---------e-----ecc-----ccccCCCCcCCCeeeeecCccEEEEecc
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEGK---A---------V-----QVP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g~---~---------i-----~~P-----~yD~~~~~rsgg~~~~v~~a~VLIVEGi 167 (509)
+.+|++..++ .++.+++....... . + ..| ..+......|+|+.+++..+++++.++.
T Consensus 81 ~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 159 (238)
T cd03249 81 LVSQEPVLFD-GTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPK 159 (238)
T ss_pred EECCchhhhh-hhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCC
Confidence 8999887665 58888876432110 0 0 001 1122345778999999999999999999
Q ss_pred eeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 168 ~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
+++.|||...+|. ...+.+..+.++.. .|.+
T Consensus 160 llllDEP~~gLD~-------~~~~~l~~~l~~~~-~g~~ 190 (238)
T cd03249 160 ILLLDEATSALDA-------ESEKLVQEALDRAM-KGRT 190 (238)
T ss_pred EEEEeCccccCCH-------HHHHHHHHHHHHhc-CCCE
Confidence 9999999999998 34445555555554 4544
No 209
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=9.1e-15 Score=144.19 Aligned_cols=137 Identities=15% Similarity=0.187 Sum_probs=109.6
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC----CCeeEEEECCccCc-------cccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDS-------SRII 108 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll----p~~g~I~~D~y~~~-------~r~i 108 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.+
T Consensus 5 ~~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 5 TTNLNLFYGKKQALFDINMQIEQNK---ITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred eeeeEEEECCEeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 4678888887889999999999999 99999999999999999999986 47899999987432 2357
Q ss_pred cccCCCCCCCchhhHHHHHHhhcc--C-----c-----------ceecc-----ccccCCCCcCCCeeeeecCccEEEEe
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKE--G-----K-----------AVQVP-----IYDFKSSSRIGYRTLEVPSSRIVIIE 165 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~--g-----~-----------~i~~P-----~yD~~~~~rsgg~~~~v~~a~VLIVE 165 (509)
++++|++..++ .++.+++..... + . ....+ ..+......|+|+.+++..+++++.+
T Consensus 82 ~~~~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 160 (246)
T PRK14269 82 GMVFQQPNVFV-KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK 160 (246)
T ss_pred EEEecCCcccc-ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 89999998886 588888854210 0 0 01111 12333456789999999999999999
Q ss_pred cceeeeccccCCCCe
Q 010501 166 GIYALSEKLRPLIDL 180 (509)
Q Consensus 166 Gi~aL~dElr~lLDl 180 (509)
+.+++.|||...+|.
T Consensus 161 p~lllLDEP~~~LD~ 175 (246)
T PRK14269 161 PKLLLLDEPTSALDP 175 (246)
T ss_pred CCEEEEcCCcccCCH
Confidence 999999999999997
No 210
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.54 E-value=5.8e-15 Score=141.38 Aligned_cols=131 Identities=20% Similarity=0.212 Sum_probs=103.8
Q ss_pred eeeeEEEeCcE-----EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCC
Q 010501 40 EDTLSFEKGFF-----IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g~~-----~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq 113 (509)
.+++++.++.. .+++++||.+++|+ +++|.||||||||||+++|+++. |..|.|.+++ .+++++|
T Consensus 3 ~~~l~~~~~~~~~~~~~il~~~s~~i~~G~---~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g------~i~~~~q 73 (204)
T cd03250 3 VEDASFTWDSGEQETSFTLKDINLEVPKGE---LVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------SIAYVSQ 73 (204)
T ss_pred EeEEEEecCCCCccccceeeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC------EEEEEec
Confidence 35677777643 69999999999999 99999999999999999999998 7899999987 5788888
Q ss_pred CCCCCchhhHHHHHHhhccCc---------------cee-cc-----ccccCCCCcCCCeeeeecCccEEEEecceeeec
Q 010501 114 DPRLTDYDTLLENIRGLKEGK---------------AVQ-VP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~g~---------------~i~-~P-----~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d 172 (509)
+|..++ .++.+++.....-. .+. .| ..+......|+|+.+++..+++++.++.+++.|
T Consensus 74 ~~~l~~-~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllD 152 (204)
T cd03250 74 EPWIQN-GTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLD 152 (204)
T ss_pred Cchhcc-CcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 887764 47777775432100 000 01 112234567889999999999999999999999
Q ss_pred cccCCCCe
Q 010501 173 KLRPLIDL 180 (509)
Q Consensus 173 Elr~lLDl 180 (509)
||...+|.
T Consensus 153 EP~~~LD~ 160 (204)
T cd03250 153 DPLSAVDA 160 (204)
T ss_pred CccccCCH
Confidence 99999997
No 211
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1e-14 Score=143.75 Aligned_cols=151 Identities=15% Similarity=0.169 Sum_probs=115.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccCc--------c
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS--------S 105 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp------~~g~I~~D~y~~~--------~ 105 (509)
.+++++.++...+++++||.+.+|+ +++|+|+||||||||+++|+++.+ ..|.|.+++.... .
T Consensus 6 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 6 IENLDLFYGENQALKSINLPIPARQ---VTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred EeccEEEECCeeeeecceEEecCCC---EEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence 4677888877889999999999999 999999999999999999999873 4899999986431 1
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhcc--Cc----c-----------eec-----cccccCCCCcCCCeeeeecCccEEE
Q 010501 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--GK----A-----------VQV-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (509)
Q Consensus 106 r~i~~~fq~p~~~d~~tl~e~L~~L~~--g~----~-----------i~~-----P~yD~~~~~rsgg~~~~v~~a~VLI 163 (509)
+.+++++|++..++ .++.+++..... +. . ... +..+...+..|+|+.+++..+++++
T Consensus 83 ~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 161 (249)
T PRK14253 83 IKVGMVFQKPNPFP-MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIA 161 (249)
T ss_pred hheeEEecCCCcCc-ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHH
Confidence 34788999988887 688888764211 10 0 000 1223445678899999999999999
Q ss_pred EecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHH
Q 010501 164 IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ 201 (509)
Q Consensus 164 VEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~ 201 (509)
.++.+++.|||...+|. ...+.+..+.+++.
T Consensus 162 ~~p~llllDEP~~~LD~-------~~~~~l~~~l~~~~ 192 (249)
T PRK14253 162 MEPDVILMDEPTSALDP-------IATHKIEELMEELK 192 (249)
T ss_pred cCCCEEEEeCCCccCCH-------HHHHHHHHHHHHHh
Confidence 99999999999999998 33444555555543
No 212
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=99.54 E-value=3.3e-15 Score=164.01 Aligned_cols=164 Identities=20% Similarity=0.265 Sum_probs=130.6
Q ss_pred eeeeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 39 IEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 39 i~~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
..++++|.|+ ..++++++||.+++|+ .+||+|||||||||+++.|.+++ |..|.|.+||.+.. ++.++
T Consensus 330 ~f~~vsf~y~~~~~vl~~is~~i~~Ge---~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~ 406 (567)
T COG1132 330 EFENVSFSYPGKKPVLKDISFSIEPGE---KVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIG 406 (567)
T ss_pred EEEEEEEEcCCCCccccCceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhcc
Confidence 4588999998 6899999999999999 99999999999999999999999 78999999987543 35689
Q ss_pred ccCCCCCCCchhhHHHHHHhhccC---cc--------------eecc-ccccCCC----CcCCCeeeeecCccEEEEecc
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEG---KA--------------VQVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g---~~--------------i~~P-~yD~~~~----~rsgg~~~~v~~a~VLIVEGi 167 (509)
+++|++.+|+ .++.+|+...+.. +. ...| .||...+ ..|+|++|++..+++++-++.
T Consensus 407 ~V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ 485 (567)
T COG1132 407 IVSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPP 485 (567)
T ss_pred EEcccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 9999999998 8999999876542 11 1235 3666554 468899999999999999999
Q ss_pred eeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHH
Q 010501 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (509)
Q Consensus 168 ~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y 214 (509)
++++||+++.+|. ...+.+.+..+... .|+|.--+.|+.
T Consensus 486 ILILDEaTSalD~-------~tE~~I~~~l~~l~-~~rT~iiIaHRl 524 (567)
T COG1132 486 ILILDEATSALDT-------ETEALIQDALKKLL-KGRTTLIIAHRL 524 (567)
T ss_pred EEEEeccccccCH-------HhHHHHHHHHHHHh-cCCEEEEEeccH
Confidence 9999999999997 33445555554443 455544455554
No 213
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.2e-14 Score=143.41 Aligned_cols=137 Identities=18% Similarity=0.226 Sum_probs=109.1
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC---C---CeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll---p---~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...+++++||.+.+|+ +++|+|+||||||||+++|+++. | ..|.|.+++....
T Consensus 8 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 84 (252)
T PRK14255 8 SSDVHLFYGKFEALKGIDLDFNQNE---ITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQL 84 (252)
T ss_pred EEeEEEEECCeeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHh
Confidence 4678888887889999999999999 99999999999999999999985 3 3799999987431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--C--c------c-------eec-----cccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G--K------A-------VQV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g--~------~-------i~~-----P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++..++ .++.+++..... + . . ... ...+...+..|+|+.+++..++++
T Consensus 85 ~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral 163 (252)
T PRK14255 85 RKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVL 163 (252)
T ss_pred cCeEEEEECCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHH
Confidence 135788999988877 588888764211 1 0 0 000 123344567889999999999999
Q ss_pred EEecceeeeccccCCCCe
Q 010501 163 IIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDl 180 (509)
+.++.+++.|||...+|.
T Consensus 164 ~~~p~llllDEPt~~LD~ 181 (252)
T PRK14255 164 AVKPDVILLDEPTSALDP 181 (252)
T ss_pred hcCCCEEEEcCCCccCCH
Confidence 999999999999999998
No 214
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=6.2e-15 Score=148.38 Aligned_cols=163 Identities=16% Similarity=0.171 Sum_probs=121.9
Q ss_pred eeeeEEEeCc---EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccc
Q 010501 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (509)
Q Consensus 40 ~~~lsf~~g~---~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i 108 (509)
.+++++.++. ..++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.++|.... .+.+
T Consensus 7 ~~~l~~~~~~~~~~~~l~~v~l~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 7 VENLVFKYEKESDVNQLNGVSFSITKGE---WVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred EEEEEEEcCCCCcCeeeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 4667777753 359999999999999 99999999999999999999998 78999999987532 2347
Q ss_pred cccCCCCC-CCchhhHHHHHHhhcc--Cc---c-----------eec-cccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 109 DGNFDDPR-LTDYDTLLENIRGLKE--GK---A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 109 ~~~fq~p~-~~d~~tl~e~L~~L~~--g~---~-----------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
++++|+|. .++..++.+++..... +. . +.. ...+......|+|+.+++..+++++.++.+++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~lll 163 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIII 163 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 88999985 4666788888864211 10 0 001 12344456789999999999999999999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCHHHHHH
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIH 212 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~e~Vi~ 212 (509)
.|||...+|. ...+.+..+.+.+.+. |.++.-+.|
T Consensus 164 lDEPt~~LD~-------~~~~~l~~~l~~l~~~~g~tiil~sH 199 (277)
T PRK13642 164 LDESTSMLDP-------TGRQEIMRVIHEIKEKYQLTVLSITH 199 (277)
T ss_pred EeCCcccCCH-------HHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 9999999998 3455556666666543 655433333
No 215
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.54 E-value=1.6e-14 Score=142.77 Aligned_cols=151 Identities=14% Similarity=0.154 Sum_probs=115.6
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p-----~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|+++. | ..|.|.+++....
T Consensus 7 ~~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (251)
T PRK14270 7 SKNLNLWYGEKQALNDINLPIYENK---ITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVEL 83 (251)
T ss_pred EEEeEEEECCeeeeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHH
Confidence 4677887777789999999999999 99999999999999999999987 3 6799999987432
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--Cc--c-------------eec-----cccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK--A-------------VQV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g~--~-------------i~~-----P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++..++ .++.+++..... +. . ... ...+......|+|+.+++..++.+
T Consensus 84 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 162 (251)
T PRK14270 84 RKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTI 162 (251)
T ss_pred HhheEEEecCCCcCC-CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHH
Confidence 234789999998887 788888864221 10 0 000 112344567889999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHH
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ 201 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~ 201 (509)
+.++.+++.|||...+|. ...+.+..+.+++.
T Consensus 163 ~~~p~llllDEP~~~LD~-------~~~~~l~~~L~~~~ 194 (251)
T PRK14270 163 AVKPDVILMDEPTSALDP-------ISTLKIEDLMVELK 194 (251)
T ss_pred hcCCCEEEEeCCcccCCH-------HHHHHHHHHHHHHH
Confidence 999999999999999998 23444444554443
No 216
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.54 E-value=1.1e-14 Score=142.83 Aligned_cols=161 Identities=18% Similarity=0.246 Sum_probs=123.4
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCCC
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq~ 114 (509)
+++++.++.. ++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.+++++|+
T Consensus 4 ~~l~~~~~~~-~l~~is~~i~~Ge---~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 4 ENLSKDWKEF-KLKNVSLEVERGD---YFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred EeEEEEeCCc-eeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 5667766554 8999999999999 99999999999999999999998 78999999987432 2357889999
Q ss_pred CCCCchhhHHHHHHhhcc-C-c--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCC
Q 010501 115 PRLTDYDTLLENIRGLKE-G-K--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (509)
Q Consensus 115 p~~~d~~tl~e~L~~L~~-g-~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~l 177 (509)
+..++..++.+++..... . . .+.. +..+......|+|+.+++..++.++-.+.+++.|||...
T Consensus 80 ~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~g 159 (235)
T cd03299 80 YALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSA 159 (235)
T ss_pred CccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCccc
Confidence 888887888888864211 0 0 0111 223444567889999999999999999999999999999
Q ss_pred CCeEEEeecCchHHHHHHHHHHHHHc-CCCHHHHHH
Q 010501 178 IDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIH 212 (509)
Q Consensus 178 LDlkIfVd~d~dirLiRRI~RD~~er-G~t~e~Vi~ 212 (509)
+|. .....+..+.+++... |.++.-+.|
T Consensus 160 LD~-------~~~~~l~~~l~~~~~~~~~tili~tH 188 (235)
T cd03299 160 LDV-------RTKEKLREELKKIRKEFGVTVLHVTH 188 (235)
T ss_pred CCH-------HHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 998 4566677777776543 666443333
No 217
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.54 E-value=6e-15 Score=148.94 Aligned_cols=160 Identities=14% Similarity=0.164 Sum_probs=120.4
Q ss_pred eeeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCe---eEEEECCccCcc-------c
Q 010501 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI---AVITMDNYNDSS-------R 106 (509)
Q Consensus 40 ~~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~---g~I~~D~y~~~~-------r 106 (509)
.+++++.++. ..++++++|.+.+|+ +++|+|+||||||||+++|++++ |.. |.|.+++..... +
T Consensus 8 i~~l~~~~~~~~~~~l~~v~l~i~~Ge---~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~ 84 (282)
T PRK13640 8 FKHVSFTYPDSKKPALNDISFSIPRGS---WTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIRE 84 (282)
T ss_pred EEEEEEEcCCCCccceeeEEEEEcCCC---EEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHh
Confidence 4567777643 469999999999999 99999999999999999999998 555 899999975421 3
Q ss_pred cccccCCCCC-CCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecce
Q 010501 107 IIDGNFDDPR-LTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (509)
Q Consensus 107 ~i~~~fq~p~-~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~ 168 (509)
.+++++|+|. .++..++.+++..... +. .+.. +..+......|+|+.+++..+++++.++.+
T Consensus 85 ~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~l 164 (282)
T PRK13640 85 KVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKI 164 (282)
T ss_pred heEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 5788999884 5666788888864211 10 0011 223445567889999999999999999999
Q ss_pred eeeccccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCHHH
Q 010501 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEE 209 (509)
Q Consensus 169 aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~e~ 209 (509)
++.|||...+|. ...+.+..+.+++.+. |.++.-
T Consensus 165 lllDEPt~gLD~-------~~~~~l~~~l~~l~~~~g~tvli 199 (282)
T PRK13640 165 IILDESTSMLDP-------AGKEQILKLIRKLKKKNNLTVIS 199 (282)
T ss_pred EEEECCcccCCH-------HHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999998 3455666666666543 665433
No 218
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=99.53 E-value=9.7e-15 Score=151.16 Aligned_cols=159 Identities=16% Similarity=0.217 Sum_probs=117.1
Q ss_pred eeeEEEe----CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CC---eeEEEECCccCcc-------
Q 010501 41 DTLSFEK----GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDSS------- 105 (509)
Q Consensus 41 ~~lsf~~----g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~---~g~I~~D~y~~~~------- 105 (509)
+++++.+ +...+++++||.+.+|+ ++||+|+||||||||+++|++++ |. .|.|.++|.....
T Consensus 16 ~~l~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~ 92 (330)
T PRK09473 16 KDLRVTFSTPDGDVTAVNDLNFSLRAGE---TLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELN 92 (330)
T ss_pred eCeEEEEecCCCCEEEEeeeEEEEcCCC---EEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHH
Confidence 4455444 34679999999999999 99999999999999999999999 44 8999999975321
Q ss_pred ----ccccccCCCC--CCCchhhHHHHHHh-hc--cC--------------cceecc----ccccCCCCcCCCeeeeecC
Q 010501 106 ----RIIDGNFDDP--RLTDYDTLLENIRG-LK--EG--------------KAVQVP----IYDFKSSSRIGYRTLEVPS 158 (509)
Q Consensus 106 ----r~i~~~fq~p--~~~d~~tl~e~L~~-L~--~g--------------~~i~~P----~yD~~~~~rsgg~~~~v~~ 158 (509)
+.++++||+| .+++..++.+++.. +. .+ ..+..+ ..+...++.|+|+.+++..
T Consensus 93 ~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~I 172 (330)
T PRK09473 93 KLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMI 172 (330)
T ss_pred HHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHH
Confidence 2578999998 34555666665532 11 00 011122 2344567889999999999
Q ss_pred ccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCHHH
Q 010501 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEE 209 (509)
Q Consensus 159 a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e~ 209 (509)
++.++.++.+++.|||...||.. ..+.+..+.+++.+ .|.++.-
T Consensus 173 ArAL~~~P~llilDEPts~LD~~-------~~~~i~~lL~~l~~~~g~til~ 217 (330)
T PRK09473 173 AMALLCRPKLLIADEPTTALDVT-------VQAQIMTLLNELKREFNTAIIM 217 (330)
T ss_pred HHHHHcCCCEEEEeCCCccCCHH-------HHHHHHHHHHHHHHHcCCEEEE
Confidence 99999999999999999999983 34455566666654 3666433
No 219
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=99.53 E-value=1.1e-14 Score=143.53 Aligned_cols=159 Identities=11% Similarity=0.078 Sum_probs=117.7
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhh--C-CCeeEEEECCccCcc------c--cc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDSS------R--II 108 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~l--l-p~~g~I~~D~y~~~~------r--~i 108 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|+++ + |..|.|.+++..... . .+
T Consensus 10 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 86 (252)
T CHL00131 10 IKNLHASVNENEILKGLNLSINKGE---IHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGI 86 (252)
T ss_pred EEeEEEEeCCEEeeecceeEEcCCc---EEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeE
Confidence 4677887777789999999999999 9999999999999999999997 3 688999999864321 1 24
Q ss_pred cccCCCCCCCchhhHHHHHHhhccC-----------------------cceecc--ccccCCC-CcCCCeeeeecCccEE
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKEG-----------------------KAVQVP--IYDFKSS-SRIGYRTLEVPSSRIV 162 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~g-----------------------~~i~~P--~yD~~~~-~rsgg~~~~v~~a~VL 162 (509)
++++|++..++..+..+++...... ..+..+ ..+...+ ..|+|+.+++..++++
T Consensus 87 ~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al 166 (252)
T CHL00131 87 FLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMA 166 (252)
T ss_pred EEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHH
Confidence 5678888777666666665432100 001111 2233444 4899999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHH
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e 208 (509)
+.++.+++.|||...+|. ...+.+..+.+.+.+.|.++.
T Consensus 167 ~~~p~llllDEPt~~LD~-------~~~~~l~~~l~~~~~~g~tii 205 (252)
T CHL00131 167 LLDSELAILDETDSGLDI-------DALKIIAEGINKLMTSENSII 205 (252)
T ss_pred HcCCCEEEEcCCcccCCH-------HHHHHHHHHHHHHHhCCCEEE
Confidence 999999999999999998 445556666666655565543
No 220
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.53 E-value=6e-15 Score=141.59 Aligned_cols=137 Identities=16% Similarity=0.158 Sum_probs=108.0
Q ss_pred eeeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
.+++++.++. ..++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.++
T Consensus 9 ~~~l~~~~~~~~~~~l~~isl~i~~G~---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 85 (207)
T cd03369 9 VENLSVRYAPDLPPVLKNVSFKVKAGE---KIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLT 85 (207)
T ss_pred EEEEEEEeCCCCcccccCceEEECCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 3567776653 479999999999999 99999999999999999999998 78999999987431 24578
Q ss_pred ccCCCCCCCchhhHHHHHHhhccCccee---ccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEGKAVQ---VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g~~i~---~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
+++|++..++ .++.+++.......... .-..+......|+|+.+++..+++++.++.+++.|||...+|.
T Consensus 86 ~v~q~~~~~~-~tv~~~l~~~~~~~~~~~~~~l~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~ 158 (207)
T cd03369 86 IIPQDPTLFS-GTIRSNLDPFDEYSDEEIYGALRVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDY 158 (207)
T ss_pred EEecCCcccC-ccHHHHhcccCCCCHHHHHHHhhccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCH
Confidence 9999997776 48888886432110000 0012344567888999999999999999999999999999997
No 221
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=8.5e-15 Score=147.61 Aligned_cols=164 Identities=15% Similarity=0.184 Sum_probs=121.3
Q ss_pred eeeeEEEeCc------EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------
Q 010501 40 EDTLSFEKGF------FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------- 104 (509)
Q Consensus 40 ~~~lsf~~g~------~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------- 104 (509)
.+++++.++. ..++++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++....
T Consensus 7 ~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 7 CKNVSYKYESNEESTEKLALDDVNLEVKKGE---FLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred EeeeEEEcCCCCCCCCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 4677777752 469999999999999 99999999999999999999998 78999999987432
Q ss_pred cccccccCCCCCC-CchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEec
Q 010501 105 SRIIDGNFDDPRL-TDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 105 ~r~i~~~fq~p~~-~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEG 166 (509)
.+.++++||+|.. +...++.+++..... +. .... +..+...+..|+|+.+++..+++++.++
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p 163 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRP 163 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 2347889998742 223466777654211 10 0011 2334556788999999999999999999
Q ss_pred ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCHHHHHHH
Q 010501 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQ 213 (509)
Q Consensus 167 i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e~Vi~~ 213 (509)
.+++.|||...+|. .....+..+.+++.+ .|.++.-+.|+
T Consensus 164 ~llllDEPt~gLD~-------~~~~~l~~~l~~l~~~~g~tillvtH~ 204 (280)
T PRK13633 164 ECIIFDEPTAMLDP-------SGRREVVNTIKELNKKYGITIILITHY 204 (280)
T ss_pred CEEEEeCCcccCCH-------HHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 99999999999998 345556666666644 46665444443
No 222
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=1.5e-14 Score=141.39 Aligned_cols=155 Identities=16% Similarity=0.199 Sum_probs=117.3
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq 113 (509)
.+++++.++... .++||.+.+|+ ++||+|+||||||||+++|++++ |..|.|.+++.... .+.+++++|
T Consensus 4 ~~~l~~~~~~~~--~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 4 LTDITWLYHHLP--MRFDLTVERGE---RVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred EEEEEEEECCcc--ceeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 356677665433 38999999999 99999999999999999999998 78999999987432 245788999
Q ss_pred CCCCCchhhHHHHHHhhc-cC---c------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 114 DPRLTDYDTLLENIRGLK-EG---K------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~-~g---~------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
++..++..++.+++.... .. . .+.. +..+...+..|+|+.+++..++.++.++.+++.|||..
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~ 158 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFS 158 (232)
T ss_pred ccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 998888788999886421 11 0 0111 22355556789999999999999999999999999999
Q ss_pred CCCeEEEeecCchHHHHHHHHHHHHH-cCCC
Q 010501 177 LIDLRVSVTGGVHFDLVKRVFRDIQR-VGQE 206 (509)
Q Consensus 177 lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t 206 (509)
.+|. ...+.+.++.+++.. .|.+
T Consensus 159 gLD~-------~~~~~~~~~l~~~~~~~~~t 182 (232)
T PRK10771 159 ALDP-------ALRQEMLTLVSQVCQERQLT 182 (232)
T ss_pred cCCH-------HHHHHHHHHHHHHHHhcCCE
Confidence 9998 344555566666543 3554
No 223
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=1.5e-14 Score=142.79 Aligned_cols=137 Identities=15% Similarity=0.203 Sum_probs=109.4
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp------~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|+++++ ..|.|.+++....
T Consensus 7 ~~~l~~~~~~~~~l~~~sl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~ 83 (251)
T PRK14251 7 AKDVHLSYGNYEALHGISLDFEEKE---LTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVEL 83 (251)
T ss_pred EEeeEEEECCeeeeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHh
Confidence 4688888888889999999999999 999999999999999999999973 5899999987431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--C----c----c-------eec-----cccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G----K----A-------VQV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g----~----~-------i~~-----P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++..++ .++.+++..... + . . ... ...+......|+|+.+++..++++
T Consensus 84 ~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral 162 (251)
T PRK14251 84 RKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARAL 162 (251)
T ss_pred hccEEEEecCCccCC-CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHH
Confidence 234788999988776 588888864221 0 0 0 001 112344457889999999999999
Q ss_pred EEecceeeeccccCCCCe
Q 010501 163 IIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDl 180 (509)
+.++.+++.|||.+.+|.
T Consensus 163 ~~~p~llllDEP~~~LD~ 180 (251)
T PRK14251 163 AVRPKVVLLDEPTSALDP 180 (251)
T ss_pred hcCCCEEEecCCCccCCH
Confidence 999999999999999997
No 224
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=1.4e-14 Score=143.19 Aligned_cols=137 Identities=20% Similarity=0.179 Sum_probs=108.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC---C---CeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll---p---~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...+|++++|.+.+|+ +++|+|+||||||||+++|++++ | ..|.|.+++....
T Consensus 9 ~~~l~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 85 (253)
T PRK14261 9 TKNLNLWYGEKHALYDITISIPKNR---VTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVAL 85 (253)
T ss_pred EeeeEEEECCeeeeeeeEEEECCCc---EEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhh
Confidence 3678888888889999999999999 99999999999999999999986 2 3799999987432
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--C----cc----e-------ec-----cccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G----KA----V-------QV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g----~~----i-------~~-----P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++..++. ++.+++..... + .. + .. ...+......|+|+.+++..++++
T Consensus 86 ~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 164 (253)
T PRK14261 86 RRKIGMVFQRPNPFPK-SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTL 164 (253)
T ss_pred hceEEEEecCCccCcc-cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHH
Confidence 1347889999988874 88888864321 1 00 0 00 012334456789999999999999
Q ss_pred EEecceeeeccccCCCCe
Q 010501 163 IIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDl 180 (509)
+.++.+++.|||...+|.
T Consensus 165 ~~~p~lllLDEP~~gLD~ 182 (253)
T PRK14261 165 AVNPEVILMDEPCSALDP 182 (253)
T ss_pred hcCCCEEEEeCCcccCCH
Confidence 999999999999999998
No 225
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=1e-14 Score=154.86 Aligned_cols=151 Identities=17% Similarity=0.157 Sum_probs=116.7
Q ss_pred eCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----------cccccccCCC
Q 010501 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDD 114 (509)
Q Consensus 47 ~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----------~r~i~~~fq~ 114 (509)
++...+++++||.+++|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+.++++||+
T Consensus 38 ~~~~~~L~~isl~i~~Ge---i~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~ 114 (400)
T PRK10070 38 TGLSLGVKDASLAIEEGE---IFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQS 114 (400)
T ss_pred cCCeEEEEeEEEEEcCCC---EEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECC
Confidence 455668999999999999 99999999999999999999998 78999999987432 1357899999
Q ss_pred CCCCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCC
Q 010501 115 PRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (509)
Q Consensus 115 p~~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~l 177 (509)
+..++..++.+++..... +. .+.. +..+...+..|+|+.+++..+++++.++.++|.|||...
T Consensus 115 ~~l~~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~ 194 (400)
T PRK10070 115 FALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSA 194 (400)
T ss_pred CcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 999988899999875321 10 0111 223445567899999999999999999999999999999
Q ss_pred CCeEEEeecCchHHHHHHHHHHHHH-cCCCH
Q 010501 178 IDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (509)
Q Consensus 178 LDlkIfVd~d~dirLiRRI~RD~~e-rG~t~ 207 (509)
+|. ...+.+..+.+++.+ .|.++
T Consensus 195 LD~-------~~r~~l~~~L~~l~~~~g~TI 218 (400)
T PRK10070 195 LDP-------LIRTEMQDELVKLQAKHQRTI 218 (400)
T ss_pred CCH-------HHHHHHHHHHHHHHHHCCCeE
Confidence 997 234444555555433 35543
No 226
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=99.53 E-value=1.3e-14 Score=145.45 Aligned_cols=158 Identities=22% Similarity=0.249 Sum_probs=115.6
Q ss_pred eeeeEEEeC---------cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----
Q 010501 40 EDTLSFEKG---------FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (509)
Q Consensus 40 ~~~lsf~~g---------~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----- 104 (509)
.+++++.++ ...+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++....
T Consensus 6 ~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 6 VSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGE---TVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred EeceEEEecCCccccccCceeeEeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 457777775 4689999999999999 99999999999999999999998 78999999987431
Q ss_pred -----cccccccCCCCC--CCchhhHHHHHHhh-c---c--C-----------cceec--cccccCCCCcCCCeeeeecC
Q 010501 105 -----SRIIDGNFDDPR--LTDYDTLLENIRGL-K---E--G-----------KAVQV--PIYDFKSSSRIGYRTLEVPS 158 (509)
Q Consensus 105 -----~r~i~~~fq~p~--~~d~~tl~e~L~~L-~---~--g-----------~~i~~--P~yD~~~~~rsgg~~~~v~~ 158 (509)
.+.+++++|++. .++..++.+++... . . . ..... ...+......|+|+.+++..
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~l 162 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCL 162 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHH
Confidence 235788888873 33445555554321 0 0 0 00111 12344556789999999999
Q ss_pred ccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCH
Q 010501 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEP 207 (509)
Q Consensus 159 a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~ 207 (509)
+++++.++.+++.|||...+|. ...+.+..+.+++... |.++
T Consensus 163 aral~~~p~lllLDEPt~~LD~-------~~~~~~~~~l~~~~~~~~~ti 205 (268)
T PRK10419 163 ARALAVEPKLLILDEAVSNLDL-------VLQAGVIRLLKKLQQQFGTAC 205 (268)
T ss_pred HHHHhcCCCEEEEeCCCcccCH-------HHHHHHHHHHHHHHHHcCcEE
Confidence 9999999999999999999997 3445555666565543 5443
No 227
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.53 E-value=1.2e-14 Score=141.32 Aligned_cols=163 Identities=17% Similarity=0.211 Sum_probs=121.6
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc-------ccccccC
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNF 112 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~-------r~i~~~f 112 (509)
+++++....+.++++++|.+.+|+ +.+|+||||||||||++.|++.+ |+.|.+.+++..... +..+..+
T Consensus 5 ~nls~~~~Gr~ll~~vsl~~~pGe---v~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlp 81 (259)
T COG4559 5 ENLSYSLAGRRLLDGVSLDLRPGE---VLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLP 81 (259)
T ss_pred eeeEEEeecceeccCcceeccCCc---EEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcc
Confidence 678999999999999999999999 99999999999999999999999 899999999885432 2345667
Q ss_pred CCCCCCchhhHHHHHHhhccCc-ceecc-----------------cc-ccCCCCcCCCeeeeecCccEE------EEecc
Q 010501 113 DDPRLTDYDTLLENIRGLKEGK-AVQVP-----------------IY-DFKSSSRIGYRTLEVPSSRIV------IIEGI 167 (509)
Q Consensus 113 q~p~~~d~~tl~e~L~~L~~g~-~i~~P-----------------~y-D~~~~~rsgg~~~~v~~a~VL------IVEGi 167 (509)
|+...-...++.|.+..-+... ....| .| .+.-...|||+.+++..+++| +-+|-
T Consensus 82 Q~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r 161 (259)
T COG4559 82 QNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGR 161 (259)
T ss_pred cCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCc
Confidence 7655544456777776643211 00111 01 111235789999999888875 44566
Q ss_pred eeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHH
Q 010501 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (509)
Q Consensus 168 ~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~ 213 (509)
++|+|||++.+|+ .|-...-++.|++..+|..+--|+|.
T Consensus 162 ~L~LDEPtsaLDi-------~HQ~~tl~laR~la~~g~~V~~VLHD 200 (259)
T COG4559 162 WLFLDEPTSALDI-------AHQHHTLRLARQLAREGGAVLAVLHD 200 (259)
T ss_pred eEEecCCccccch-------HHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 9999999999999 47777888999998888665444443
No 228
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=99.53 E-value=1.6e-14 Score=144.62 Aligned_cols=137 Identities=18% Similarity=0.199 Sum_probs=109.7
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp------~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...+++++||.+.+|+ +++|+|+||||||||+++|+++++ ..|.|.+|+....
T Consensus 23 ~~nl~~~~~~~~il~~vsl~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 99 (267)
T PRK14237 23 TKDLHVYYGKKEAIKGIDMQFEKNK---ITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEM 99 (267)
T ss_pred EeeEEEEECCeeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHH
Confidence 4677888878889999999999999 999999999999999999999972 6899999987532
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--Cc----c-----------eec-----cccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK----A-----------VQV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g~----~-----------i~~-----P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++..++ .++.+++..... +. . ... ...+...+..|+|+.+++..++++
T Consensus 100 ~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral 178 (267)
T PRK14237 100 RKHIGMVFQRPNPFA-KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAI 178 (267)
T ss_pred hcceEEEecCCcccc-ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHH
Confidence 234788999988776 588888865211 10 0 000 012334567889999999999999
Q ss_pred EEecceeeeccccCCCCe
Q 010501 163 IIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDl 180 (509)
+..+.+++.|||...+|.
T Consensus 179 ~~~p~lllLDEPt~~LD~ 196 (267)
T PRK14237 179 AVKPDILLMDEPASALDP 196 (267)
T ss_pred hcCCCEEEEeCCcccCCH
Confidence 999999999999999997
No 229
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.53 E-value=1.9e-14 Score=145.78 Aligned_cols=137 Identities=18% Similarity=0.235 Sum_probs=109.1
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC---C---CeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll---p---~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|+++. | ..|.|.++|....
T Consensus 42 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~ 118 (286)
T PRK14275 42 AKNFSIYYGEFEAVKKVNADILSKY---VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLL 118 (286)
T ss_pred EeeeEEEECCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHh
Confidence 4678888877789999999999999 99999999999999999999974 3 8899999986421
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--C----cc-----------ee-----ccccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G----KA-----------VQ-----VPIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g----~~-----------i~-----~P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
++.+++++|++..++. ++.+++..... + .. .. ....+...+..|+|+.+++..++.+
T Consensus 119 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL 197 (286)
T PRK14275 119 RKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTL 197 (286)
T ss_pred hhcEEEECCCCCCCcc-CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHH
Confidence 2357899999987764 88888764211 0 00 00 0122444567889999999999999
Q ss_pred EEecceeeeccccCCCCe
Q 010501 163 IIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDl 180 (509)
+.++.+++.|||...+|.
T Consensus 198 ~~~p~lllLDEPt~gLD~ 215 (286)
T PRK14275 198 AVEPEILLLDEPTSALDP 215 (286)
T ss_pred hcCCCEEEEeCCCccCCH
Confidence 999999999999999997
No 230
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=99.53 E-value=4.4e-15 Score=167.11 Aligned_cols=138 Identities=21% Similarity=0.245 Sum_probs=112.9
Q ss_pred eeeeeEEEeCcE--EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccc
Q 010501 39 IEDTLSFEKGFF--IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (509)
Q Consensus 39 i~~~lsf~~g~~--~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i 108 (509)
-.++++|.|+.. ++|+++|+.+++|+ .|+|+|+||||||||+|.|.+++ |..|.|.+||++.. ++.+
T Consensus 473 ~~~nvsf~y~~~~~~vL~~isL~I~~Ge---~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~i 549 (709)
T COG2274 473 EFENVSFRYGPDDPPVLEDLSLEIPPGE---KVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQV 549 (709)
T ss_pred EEEEEEEEeCCCCcchhhceeEEeCCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhhe
Confidence 357888988765 79999999999999 99999999999999999999999 89999999999643 3568
Q ss_pred cccCCCCCCCchhhHHHHHHhhccCc-----------------ceecc-ccccCCC----CcCCCeeeeecCccEEEEec
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKEGK-----------------AVQVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~g~-----------------~i~~P-~yD~~~~----~rsgg~~~~v~~a~VLIVEG 166 (509)
+++.|++.+|. -++.||+......- -...| -|+...+ ..|||++|++..++.++-++
T Consensus 550 g~V~Q~~~Lf~-gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P 628 (709)
T COG2274 550 GYVLQDPFLFS-GSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKP 628 (709)
T ss_pred eEEcccchhhc-CcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCC
Confidence 99999986653 56777776533211 11234 3555443 47899999999999999999
Q ss_pred ceeeeccccCCCCe
Q 010501 167 IYALSEKLRPLIDL 180 (509)
Q Consensus 167 i~aL~dElr~lLDl 180 (509)
..+++||+++.+|.
T Consensus 629 ~ILlLDEaTSaLD~ 642 (709)
T COG2274 629 KILLLDEATSALDP 642 (709)
T ss_pred CEEEEeCcccccCH
Confidence 99999999999997
No 231
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.53 E-value=1e-14 Score=147.55 Aligned_cols=160 Identities=16% Similarity=0.164 Sum_probs=117.3
Q ss_pred eeeeEEEeCcE-----EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFF-----IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~-----~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------- 104 (509)
.+++++.++.. .+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++....
T Consensus 9 i~nl~~~~~~~~~~~~~il~~is~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 85 (289)
T PRK13645 9 LDNVSYTYAKKTPFEFKALNNTSLTFKKNK---VTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEV 85 (289)
T ss_pred EEEEEEEeCCCCccccceeeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccH
Confidence 45677777543 49999999999999 99999999999999999999998 78999999886421
Q ss_pred ---cccccccCCCCCC-CchhhHHHHHHhhcc--Cc--------------ceecc--ccccCCCCcCCCeeeeecCccEE
Q 010501 105 ---SRIIDGNFDDPRL-TDYDTLLENIRGLKE--GK--------------AVQVP--IYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ---~r~i~~~fq~p~~-~d~~tl~e~L~~L~~--g~--------------~i~~P--~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
++.+++++|++.. +...++.+++..... +. ....+ ..+......|+|+.+++..++++
T Consensus 86 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral 165 (289)
T PRK13645 86 KRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGII 165 (289)
T ss_pred HHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 1347888998742 223477887754211 10 01121 22344567889999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCHHH
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEE 209 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e~ 209 (509)
+.++.+++.|||...+|. ...+.+.++.+.+.. .|.++.-
T Consensus 166 ~~~p~lLlLDEPt~~LD~-------~~~~~l~~~l~~~~~~~~~tiii 206 (289)
T PRK13645 166 AMDGNTLVLDEPTGGLDP-------KGEEDFINLFERLNKEYKKRIIM 206 (289)
T ss_pred HhCCCEEEEeCCcccCCH-------HHHHHHHHHHHHHHHhcCCEEEE
Confidence 999999999999999998 345556666666543 3655433
No 232
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.52 E-value=1.4e-14 Score=141.30 Aligned_cols=136 Identities=21% Similarity=0.237 Sum_probs=106.4
Q ss_pred eeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccccc
Q 010501 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (509)
Q Consensus 41 ~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~~ 111 (509)
+++++.++ ...++++++|.+.+|+ +++|+|+||||||||+++|+++. |..|.|.+++.... .+.+++.
T Consensus 4 ~~l~~~~~~~~~~l~~i~~~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 4 ENVTFAYDPGRPVLKDVSFTIPAGK---KVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred EEEEEEeCCCCceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 56677764 4669999999999999 99999999999999999999998 78999999986432 1347889
Q ss_pred CCCCCCCchhhHHHHHHhhccCc---c---------e-----ecc-c----cccCCCCcCCCeeeeecCccEEEEeccee
Q 010501 112 FDDPRLTDYDTLLENIRGLKEGK---A---------V-----QVP-I----YDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (509)
Q Consensus 112 fq~p~~~d~~tl~e~L~~L~~g~---~---------i-----~~P-~----yD~~~~~rsgg~~~~v~~a~VLIVEGi~a 169 (509)
+|++..++ .++.+++....... . + ..| . .+......|+|+.+++..+++++.++.++
T Consensus 81 ~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~ll 159 (236)
T cd03253 81 PQDTVLFN-DTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPIL 159 (236)
T ss_pred CCCChhhc-chHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99987775 58888876432110 0 0 001 0 11223567889999999999999999999
Q ss_pred eeccccCCCCe
Q 010501 170 LSEKLRPLIDL 180 (509)
Q Consensus 170 L~dElr~lLDl 180 (509)
+.|||.+.+|.
T Consensus 160 llDEP~~~LD~ 170 (236)
T cd03253 160 LLDEATSALDT 170 (236)
T ss_pred EEeCCcccCCH
Confidence 99999999998
No 233
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=99.52 E-value=1.1e-14 Score=143.98 Aligned_cols=159 Identities=16% Similarity=0.087 Sum_probs=113.6
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc-----Cc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN-----DS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~-----~~--------- 104 (509)
.+++++.++...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++.. ..
T Consensus 6 ~~~l~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (253)
T TIGR02323 6 VSGLSKSYGGGKGCRDVSFDLYPGE---VLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRR 82 (253)
T ss_pred EeeeEEEeCCceEeecceEEEeCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHH
Confidence 4678888877789999999999999 99999999999999999999998 789999998754 21
Q ss_pred --cccccccCCCCCC--CchhhHHHHHHh----hcc---C----------cceec--cccccCCCCcCCCeeeeecCccE
Q 010501 105 --SRIIDGNFDDPRL--TDYDTLLENIRG----LKE---G----------KAVQV--PIYDFKSSSRIGYRTLEVPSSRI 161 (509)
Q Consensus 105 --~r~i~~~fq~p~~--~d~~tl~e~L~~----L~~---g----------~~i~~--P~yD~~~~~rsgg~~~~v~~a~V 161 (509)
.+.+++.+|++.. +...++.+++.. ... . ..... ...+......|+|+.+++..+++
T Consensus 83 ~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~lara 162 (253)
T TIGR02323 83 LMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARN 162 (253)
T ss_pred hhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHH
Confidence 1236788888642 222233334321 000 0 00111 12344556789999999999999
Q ss_pred EEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCHH
Q 010501 162 VIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPE 208 (509)
Q Consensus 162 LIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e 208 (509)
++.++.+++.|||.+.+|. .....+..+.++... .|.++.
T Consensus 163 l~~~p~vlllDEP~~~LD~-------~~~~~l~~~l~~~~~~~~~tii 203 (253)
T TIGR02323 163 LVTRPRLVFMDEPTGGLDV-------SVQARLLDLLRGLVRDLGLAVI 203 (253)
T ss_pred HhcCCCEEEEcCCCccCCH-------HHHHHHHHHHHHHHHhcCCEEE
Confidence 9999999999999999998 344555555555543 355543
No 234
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.52 E-value=1.9e-14 Score=145.05 Aligned_cols=158 Identities=15% Similarity=0.125 Sum_probs=117.9
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CC--------eeEEEECCccCc------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS--------IAVITMDNYNDS------ 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~--------~g~I~~D~y~~~------ 104 (509)
.+++++.++...+++++||.+.+|+ +++|+|+||||||||+++|++++ |. .|.|.+++....
T Consensus 4 ~~nl~~~~~~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 4 ADHLHVARRHRAILRDLSLRIEPGR---VTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred EEEEEEEECCEeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 4577888888889999999999999 99999999999999999999998 55 899999986432
Q ss_pred -cccccccCCCCCCCchhhHHHHHHhhcc------Cc--------------ceecc-ccccCCCCcCCCeeeeecCccEE
Q 010501 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKE------GK--------------AVQVP-IYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 -~r~i~~~fq~p~~~d~~tl~e~L~~L~~------g~--------------~i~~P-~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++..+...++.+++..... +. ....+ ..+......|+|+.+++..++++
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral 160 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVL 160 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHH
Confidence 1236788998765555788888754210 00 00011 12334467889999999999999
Q ss_pred EE---------ecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCH
Q 010501 163 II---------EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEP 207 (509)
Q Consensus 163 IV---------EGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~ 207 (509)
+. ++.+++.|||...+|. .....+..+.+++... |.++
T Consensus 161 ~~~~~~~~~~~~p~lllLDEPt~~LD~-------~~~~~l~~~l~~~~~~~~~tv 208 (272)
T PRK13547 161 AQLWPPHDAAQPPRYLLLDEPTAALDL-------AHQHRLLDTVRRLARDWNLGV 208 (272)
T ss_pred hccccccccCCCCCEEEEcCccccCCH-------HHHHHHHHHHHHHHHhcCCEE
Confidence 94 9999999999999998 3445555555555443 5553
No 235
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.52 E-value=1.5e-14 Score=159.04 Aligned_cols=134 Identities=16% Similarity=0.123 Sum_probs=109.7
Q ss_pred eeeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCC
Q 010501 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (509)
Q Consensus 40 ~~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~ 117 (509)
.+++++.++ ...+++++||.+.+|+ +++|+||||||||||+++|++.+ |..|.|.+++ ...+++++|+|..
T Consensus 9 i~~l~~~y~~~~~il~~vs~~i~~Ge---~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~----~~~i~~v~Q~~~~ 81 (556)
T PRK11819 9 MNRVSKVVPPKKQILKDISLSFFPGA---KIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP----GIKVGYLPQEPQL 81 (556)
T ss_pred EeeEEEEeCCCCeeeeCceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----CCEEEEEecCCCC
Confidence 367888887 6889999999999999 99999999999999999999998 7899998864 2458899999988
Q ss_pred CchhhHHHHHHhhcc----------------Ccc------------------------------------eeccccccCC
Q 010501 118 TDYDTLLENIRGLKE----------------GKA------------------------------------VQVPIYDFKS 145 (509)
Q Consensus 118 ~d~~tl~e~L~~L~~----------------g~~------------------------------------i~~P~yD~~~ 145 (509)
++..++.+++..... ... ...+..+...
T Consensus 82 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~ 161 (556)
T PRK11819 82 DPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKV 161 (556)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCch
Confidence 888888888754110 000 0011234455
Q ss_pred CCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 146 SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 146 ~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
+..|+|+.+++..+++++.++.++|+|||.+.||.
T Consensus 162 ~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~ 196 (556)
T PRK11819 162 TKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDA 196 (556)
T ss_pred hhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCCh
Confidence 67899999999999999999999999999999998
No 236
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=99.52 E-value=1.7e-14 Score=144.80 Aligned_cols=137 Identities=16% Similarity=0.196 Sum_probs=109.0
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp------~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|+++++ ..|.|.+++....
T Consensus 27 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 103 (271)
T PRK14238 27 TQNLNLWYGEDHALKNINLDIHENE---VTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEEL 103 (271)
T ss_pred EeeeEEEECCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHH
Confidence 4778888877789999999999999 999999999999999999999973 7899999986431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--Cc----cee---------------c-cccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK----AVQ---------------V-PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g~----~i~---------------~-P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++..++ .++.+++..... +. ... . ...+......|+|+.+++..++++
T Consensus 104 ~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL 182 (271)
T PRK14238 104 RTNVGMVFQKPNPFP-KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCL 182 (271)
T ss_pred hhhEEEEecCCcccc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHH
Confidence 235788999988776 488888864211 10 000 0 112334566889999999999999
Q ss_pred EEecceeeeccccCCCCe
Q 010501 163 IIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDl 180 (509)
+.++.+++.|||...+|.
T Consensus 183 ~~~p~lllLDEPt~~LD~ 200 (271)
T PRK14238 183 AIEPDVILMDEPTSALDP 200 (271)
T ss_pred HcCCCEEEEeCCCCcCCH
Confidence 999999999999999998
No 237
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=99.52 E-value=9.4e-15 Score=141.11 Aligned_cols=137 Identities=18% Similarity=0.163 Sum_probs=106.4
Q ss_pred eeeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
.+++++.++. ..+++++||.+++|+ +++|+||||||||||+++|++.. |..|.|.+++.... .+.++
T Consensus 5 ~~~l~~~~~~~~~~~l~~i~~~i~~G~---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 5 FRNVSFSYPNQEIPALDNVSLTIRAGE---KVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred EEEEEEEcCCCCcccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 3566776654 569999999999999 99999999999999999999998 78999999986431 13578
Q ss_pred ccCCCCCCCchhhHHHHHHhhccCc---c-------eec-ccccc-----------CCCCcCCCeeeeecCccEEEEecc
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEGK---A-------VQV-PIYDF-----------KSSSRIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g~---~-------i~~-P~yD~-----------~~~~rsgg~~~~v~~a~VLIVEGi 167 (509)
+++|++..++ .++.+++....... . ... ...+. .....|+|+.+++..+++++.++.
T Consensus 82 ~~~q~~~~~~-~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~ 160 (220)
T cd03245 82 YVPQDVTLFY-GTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPP 160 (220)
T ss_pred EeCCCCcccc-chHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCC
Confidence 8999988776 58888875421100 0 000 01111 125788999999999999999999
Q ss_pred eeeeccccCCCCe
Q 010501 168 YALSEKLRPLIDL 180 (509)
Q Consensus 168 ~aL~dElr~lLDl 180 (509)
+++.|||...+|.
T Consensus 161 llllDEPt~~LD~ 173 (220)
T cd03245 161 ILLLDEPTSAMDM 173 (220)
T ss_pred EEEEeCccccCCH
Confidence 9999999999998
No 238
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.52 E-value=1.8e-14 Score=142.30 Aligned_cols=152 Identities=14% Similarity=0.162 Sum_probs=115.0
Q ss_pred eeeeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccCc-------
Q 010501 38 PIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS------- 104 (509)
Q Consensus 38 ~i~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp------~~g~I~~D~y~~~------- 104 (509)
.-.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|+++.+ ..|.|.+++....
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge---~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKRE---VTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 345778888887889999999999999 999999999999999999999962 5899999986421
Q ss_pred --cccccccCCCCCCCchhhHHHHHHhhc--cCc----------------ceecc-----ccccCCCCcCCCeeeeecCc
Q 010501 105 --SRIIDGNFDDPRLTDYDTLLENIRGLK--EGK----------------AVQVP-----IYDFKSSSRIGYRTLEVPSS 159 (509)
Q Consensus 105 --~r~i~~~fq~p~~~d~~tl~e~L~~L~--~g~----------------~i~~P-----~yD~~~~~rsgg~~~~v~~a 159 (509)
.+.+++++|++..++. ++.+++.... .+. .+... ..+......|+|+.+++..+
T Consensus 83 ~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~la 161 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIA 161 (251)
T ss_pred HHhhhEEEEecCcccccC-CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHH
Confidence 2347889999888775 7788775421 010 00010 12233456788999999999
Q ss_pred cEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHH
Q 010501 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDI 200 (509)
Q Consensus 160 ~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~ 200 (509)
+.++.++.+++.|||...+|. .....+.++++++
T Consensus 162 ral~~~p~llllDEPt~~LD~-------~~~~~l~~~l~~~ 195 (251)
T PRK14244 162 RAIAVKPTMLLMDEPCSALDP-------VATNVIENLIQEL 195 (251)
T ss_pred HHHhcCCCEEEEeCCCccCCH-------HHHHHHHHHHHHH
Confidence 999999999999999999997 2344445555554
No 239
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=99.52 E-value=1.2e-14 Score=137.15 Aligned_cols=135 Identities=23% Similarity=0.268 Sum_probs=101.1
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc-------ccccccC
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNF 112 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~-------r~i~~~f 112 (509)
+++++.++...+++++++.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++..... +.+++++
T Consensus 3 ~~l~~~~~~~~~l~~~~~~i~~G~---~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 79 (180)
T cd03214 3 ENLSVGYGGRTVLDDLSLSIEAGE---IVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP 79 (180)
T ss_pred eEEEEEECCeeeEeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH
Confidence 467777777789999999999999 99999999999999999999998 789999999864321 1234444
Q ss_pred CCCCCCchhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHH
Q 010501 113 DDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL 192 (509)
Q Consensus 113 q~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirL 192 (509)
| .+..+. +. +..+......|+|+.+++..+++++.++.+++.|||...+|. ...+.
T Consensus 80 q------------~l~~~g----l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~-------~~~~~ 135 (180)
T cd03214 80 Q------------ALELLG----LA-HLADRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDI-------AHQIE 135 (180)
T ss_pred H------------HHHHcC----CH-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH-------HHHHH
Confidence 4 111111 00 112233457889999999999999999999999999999997 34445
Q ss_pred HHHHHHHHHH
Q 010501 193 VKRVFRDIQR 202 (509)
Q Consensus 193 iRRI~RD~~e 202 (509)
+.++.+.+..
T Consensus 136 ~~~~l~~~~~ 145 (180)
T cd03214 136 LLELLRRLAR 145 (180)
T ss_pred HHHHHHHHHH
Confidence 5555555443
No 240
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=99.52 E-value=1.1e-14 Score=141.59 Aligned_cols=157 Identities=11% Similarity=0.049 Sum_probs=117.9
Q ss_pred eeeeEEEeCc----EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC----CeeEEEECCccCc----ccc
Q 010501 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS----SRI 107 (509)
Q Consensus 40 ~~~lsf~~g~----~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp----~~g~I~~D~y~~~----~r~ 107 (509)
..+++|.+.. ..++++++|.+.+|+ +++|+||||||||||+++|++.++ ..|.|.+++.... .+.
T Consensus 6 ~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 6 WWDVGLKAKNWNKYARILNDVSLHVESGQ---VMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred eecceeeeecCccccccccCceEEEcCCe---EEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 4567776643 679999999999999 999999999999999999999974 7899999986432 245
Q ss_pred ccccCCCCCCCchhhHHHHHHhhcc--C-c---------ce---ecc------ccccCCCCcCCCeeeeecCccEEEEec
Q 010501 108 IDGNFDDPRLTDYDTLLENIRGLKE--G-K---------AV---QVP------IYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 108 i~~~fq~p~~~d~~tl~e~L~~L~~--g-~---------~i---~~P------~yD~~~~~rsgg~~~~v~~a~VLIVEG 166 (509)
+++++|++..++..++.+++..... . . .. ..+ ..+......|+|+.+++..+++++.++
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p 162 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDP 162 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCC
Confidence 7889999988888899998864211 0 0 00 011 112233567889999999999999999
Q ss_pred ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 167 i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
.+++.|||...+|. .....+..+.+++.+.|.+
T Consensus 163 ~illlDEP~~gLD~-------~~~~~~~~~l~~~~~~~~t 195 (226)
T cd03234 163 KVLILDEPTSGLDS-------FTALNLVSTLSQLARRNRI 195 (226)
T ss_pred CEEEEeCCCcCCCH-------HHHHHHHHHHHHHHHCCCE
Confidence 99999999999997 3444555555555444443
No 241
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.52 E-value=1.2e-14 Score=142.73 Aligned_cols=147 Identities=14% Similarity=0.172 Sum_probs=109.6
Q ss_pred EeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc------cccccccC-CCCCC
Q 010501 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF-DDPRL 117 (509)
Q Consensus 46 ~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~------~r~i~~~f-q~p~~ 117 (509)
.++...+|++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.+++++ +++..
T Consensus 30 ~~~~~~il~~vs~~i~~Ge---~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~ 106 (236)
T cd03267 30 KYREVEALKGISFTIEKGE---IVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQL 106 (236)
T ss_pred ccCCeeeeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCcccc
Confidence 4566789999999999999 99999999999999999999998 78999999886421 13467777 45556
Q ss_pred CchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 118 TDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 118 ~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
++..++.+++..... +. .... +..+......|+|+.+++..+++++.++.+++.|||...+|.
T Consensus 107 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 186 (236)
T cd03267 107 WWDLPVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDV 186 (236)
T ss_pred CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 666777777654221 10 0011 123444567889999999999999999999999999999998
Q ss_pred EEEeecCchHHHHHHHHHHHHH
Q 010501 181 RVSVTGGVHFDLVKRVFRDIQR 202 (509)
Q Consensus 181 kIfVd~d~dirLiRRI~RD~~e 202 (509)
...+.+..+.+.+..
T Consensus 187 -------~~~~~l~~~l~~~~~ 201 (236)
T cd03267 187 -------VAQENIRNFLKEYNR 201 (236)
T ss_pred -------HHHHHHHHHHHHHHh
Confidence 344455555555433
No 242
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.52 E-value=1.3e-14 Score=140.26 Aligned_cols=136 Identities=16% Similarity=0.145 Sum_probs=106.2
Q ss_pred eeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----------ccc
Q 010501 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRI 107 (509)
Q Consensus 41 ~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----------~r~ 107 (509)
.++.|.++ ...+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++.... ++.
T Consensus 4 ~~~~~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 4 TNGYFSWGSGLATLSNINIRIPTGQ---LTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeEEecCCCCcceeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 46667765 4579999999999999 99999999999999999999998 78999999886321 134
Q ss_pred ccccCCCCCCCchhhHHHHHHhhccCc--c-------ee-------ccc-----cccCCCCcCCCeeeeecCccEEEEec
Q 010501 108 IDGNFDDPRLTDYDTLLENIRGLKEGK--A-------VQ-------VPI-----YDFKSSSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 108 i~~~fq~p~~~d~~tl~e~L~~L~~g~--~-------i~-------~P~-----yD~~~~~rsgg~~~~v~~a~VLIVEG 166 (509)
+++.+|++..++ .++.+++....... . .. .|. .+......|+|+.+++..+++++.++
T Consensus 81 i~~~~q~~~~~~-~t~~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p 159 (218)
T cd03290 81 VAYAAQKPWLLN-ATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNT 159 (218)
T ss_pred EEEEcCCCcccc-ccHHHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCC
Confidence 788999987774 58888876532110 0 00 010 12234578899999999999999999
Q ss_pred ceeeeccccCCCCe
Q 010501 167 IYALSEKLRPLIDL 180 (509)
Q Consensus 167 i~aL~dElr~lLDl 180 (509)
.+++.|||...+|.
T Consensus 160 ~illlDEPt~~LD~ 173 (218)
T cd03290 160 NIVFLDDPFSALDI 173 (218)
T ss_pred CEEEEeCCccccCH
Confidence 99999999999997
No 243
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.52 E-value=1.5e-14 Score=157.28 Aligned_cols=163 Identities=20% Similarity=0.184 Sum_probs=121.2
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC---CCeeEEEECC----------------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDN---------------- 100 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll---p~~g~I~~D~---------------- 100 (509)
.+++++.++...+++++||.+.+|+ +++|+||||||||||+++|++++ |..|.|.+++
T Consensus 3 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 3 VKNLTKKFDGKEVLKNISFTIEEGE---VLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred EEEEEEEECCeEeeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 3678888887889999999999999 99999999999999999999995 7889998862
Q ss_pred -------cc---------C--------ccccccccCCC-CCCCchhhHHHHHHhhcc--Cc--------------ceecc
Q 010501 101 -------YN---------D--------SSRIIDGNFDD-PRLTDYDTLLENIRGLKE--GK--------------AVQVP 139 (509)
Q Consensus 101 -------y~---------~--------~~r~i~~~fq~-p~~~d~~tl~e~L~~L~~--g~--------------~i~~P 139 (509)
.. . .++.++++||+ +..++..++.+++..... +. .+...
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~ 159 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLS 159 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh
Confidence 10 0 01346888997 566776788888754211 10 01111
Q ss_pred -ccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCHHHHHH
Q 010501 140 -IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIH 212 (509)
Q Consensus 140 -~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e~Vi~ 212 (509)
..+...+..|+|+.+++..+++++.++.++|+|||.+.+|. .....+..+.+++.. .|.++.-+.|
T Consensus 160 ~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~-------~~~~~l~~~l~~l~~~~g~tviivtH 227 (520)
T TIGR03269 160 HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDP-------QTAKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCH-------HHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 23455678899999999999999999999999999999998 455566666666643 4666433333
No 244
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=2.3e-14 Score=145.11 Aligned_cols=151 Identities=16% Similarity=0.165 Sum_probs=115.9
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC------CCeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll------p~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...+|++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.++|....
T Consensus 42 i~~l~~~~~~~~il~~is~~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~ 118 (285)
T PRK14254 42 ARDLNVFYGDEQALDDVSMDIPENQ---VTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVAL 118 (285)
T ss_pred EEEEEEEECCEeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhh
Confidence 4678888877889999999999999 99999999999999999999997 36899999886431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--Cc-------------ceec-----cccccCCCCcCCCeeeeecCccEEEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK-------------AVQV-----PIYDFKSSSRIGYRTLEVPSSRIVII 164 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g~-------------~i~~-----P~yD~~~~~rsgg~~~~v~~a~VLIV 164 (509)
.+.+++++|++..++. ++.+++..... +. .... ...+...+..|+|+.+++..+++++.
T Consensus 119 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~ 197 (285)
T PRK14254 119 RRRIGMVFQKPNPFPK-SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAP 197 (285)
T ss_pred hccEEEEecCCccCcC-CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHc
Confidence 2357889999877764 88888764211 00 0000 11244456789999999999999999
Q ss_pred ecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHH
Q 010501 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ 201 (509)
Q Consensus 165 EGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~ 201 (509)
++.++++|||...+|. .....+..+++++.
T Consensus 198 ~p~lLLLDEPts~LD~-------~~~~~l~~~L~~~~ 227 (285)
T PRK14254 198 DPEVILMDEPASALDP-------VATSKIEDLIEELA 227 (285)
T ss_pred CCCEEEEeCCCCCCCH-------HHHHHHHHHHHHHh
Confidence 9999999999999998 34445555555543
No 245
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.51 E-value=1.3e-14 Score=147.95 Aligned_cols=196 Identities=18% Similarity=0.211 Sum_probs=148.4
Q ss_pred eCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----------cccccccCCC
Q 010501 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIIDGNFDD 114 (509)
Q Consensus 47 ~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----------~r~i~~~fq~ 114 (509)
.|...-++++||.++.|+ |..|.|-||||||||+++|.++. |+.|.|.+|+.... ++.++++||.
T Consensus 38 tg~vvGv~~~sl~v~~Ge---IfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~ 114 (386)
T COG4175 38 TGLVVGVNDASLDVEEGE---IFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQS 114 (386)
T ss_pred hCcEEeeccceeeecCCe---EEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhh
Confidence 355667899999999999 99999999999999999999998 89999999998542 2467999999
Q ss_pred CCCCchhhHHHHHHhhccCc----------------ceecccc-ccCCCCcCCCeeeeecCccEEEEecceeeeccccCC
Q 010501 115 PRLTDYDTLLENIRGLKEGK----------------AVQVPIY-DFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (509)
Q Consensus 115 p~~~d~~tl~e~L~~L~~g~----------------~i~~P~y-D~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~l 177 (509)
..++++.++.+|..+-.+-. .+-...| ++..+++|||++|+++.++++..++..+|-||+++.
T Consensus 115 FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSA 194 (386)
T COG4175 115 FALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSA 194 (386)
T ss_pred hccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhh
Confidence 99999999999998744311 1112223 445678999999999999999999999999999999
Q ss_pred CCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEcCCCCCCcCCCCcceeeccC
Q 010501 178 IDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKST 257 (509)
Q Consensus 178 LDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~~~p~~g~~~~~~i~ks~ 257 (509)
||+ |+|+=..|. +-+.... .+..-|-|.+++|--...-+.+
T Consensus 195 LDP-----------LIR~~mQde----------Ll~Lq~~------------l~KTIvFitHDLdEAlriG~rI------ 235 (386)
T COG4175 195 LDP-----------LIRTEMQDE----------LLELQAK------------LKKTIVFITHDLDEALRIGDRI------ 235 (386)
T ss_pred cCh-----------HHHHHHHHH----------HHHHHHH------------hCCeEEEEecCHHHHHhccceE------
Confidence 998 444433321 1112111 1334455567776544444443
Q ss_pred CcccHHHHHHHhcccccccccceeeEEEeCCCCCcc
Q 010501 258 RPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPD 293 (509)
Q Consensus 258 ~~~~~~~i~~~l~~~~~~~~~~~~diyl~pp~~~~~ 293 (509)
+.|..+.+.+.+.|-+|...|++..+.
T Consensus 236 ---------aimkdG~ivQ~Gtp~eIl~~PAndYV~ 262 (386)
T COG4175 236 ---------AIMKDGEIVQVGTPEEILLNPANDYVR 262 (386)
T ss_pred ---------EEecCCeEEEeCCHHHHHcCccHHHHH
Confidence 347788889999999999999887764
No 246
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.51 E-value=4.6e-15 Score=160.99 Aligned_cols=173 Identities=20% Similarity=0.265 Sum_probs=128.4
Q ss_pred CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccC---------ccccccccCCCCCC
Q 010501 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND---------SSRIIDGNFDDPRL 117 (509)
Q Consensus 48 g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~---------~~r~i~~~fq~p~~ 117 (509)
+...++++|||.+.+|+ ++||+|+||||||||+++|++++ |..|.|.+++... ..+.+.++||+|.+
T Consensus 302 ~~~~Av~~VSf~l~~GE---~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~ 378 (539)
T COG1123 302 GEVKAVDDVSFDLREGE---TLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYS 378 (539)
T ss_pred cceeeeeeeeeEecCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCccc
Confidence 34679999999999999 99999999999999999999999 8899999988641 11356788999853
Q ss_pred --CchhhHHHHHHhhcc-C----------------cceecc--ccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 118 --TDYDTLLENIRGLKE-G----------------KAVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 118 --~d~~tl~e~L~~L~~-g----------------~~i~~P--~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
.+..++.+.+..-.. . ..+..| ..++..|+.|||+.|+++.+++|+.++-+++.||+.+
T Consensus 379 SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~S 458 (539)
T COG1123 379 SLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVS 458 (539)
T ss_pred ccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCcc
Confidence 567777777754221 0 012222 4677889999999999999999999999999999999
Q ss_pred CCCeEEEeecCchHHHHHHHHHHHH-HcCCCH------HHHHHHHHHhhhhHHHHhhcCCC
Q 010501 177 LIDLRVSVTGGVHFDLVKRVFRDIQ-RVGQEP------EEIIHQISETVYPMYKAFIEPDL 230 (509)
Q Consensus 177 lLDlkIfVd~d~dirLiRRI~RD~~-erG~t~------e~Vi~~y~~~V~P~~~~fIeP~k 230 (509)
.||..+ .+-+-.+..++. +.|.+. ..+..+..+++.-||...|....
T Consensus 459 aLDvsv-------qa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G 512 (539)
T COG1123 459 ALDVSV-------QAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEG 512 (539)
T ss_pred ccCHHH-------HHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeC
Confidence 999843 222333444443 347663 45566666666666665554444
No 247
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=99.51 E-value=2.9e-14 Score=142.46 Aligned_cols=137 Identities=20% Similarity=0.214 Sum_probs=108.4
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp------~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|+++++ ..|.|.+++....
T Consensus 13 i~~v~~~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 89 (264)
T PRK14243 13 TENLNVYYGSFLAVKNVWLDIPKNQ---ITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEV 89 (264)
T ss_pred EeeeEEEECCEEEeecceEEEcCCC---EEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHH
Confidence 4677888877889999999999999 999999999999999999999862 6899999986431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--Cc------ce-------ec-----cccccCCCCcCCCeeeeecCccEEEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK------AV-------QV-----PIYDFKSSSRIGYRTLEVPSSRIVII 164 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g~------~i-------~~-----P~yD~~~~~rsgg~~~~v~~a~VLIV 164 (509)
.+.+++++|++..++ .++.+++..... +. .+ .. ...+......|+|+.+++..+++++.
T Consensus 90 ~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~ 168 (264)
T PRK14243 90 RRRIGMVFQKPNPFP-KSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAV 168 (264)
T ss_pred hhhEEEEccCCcccc-ccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 234788999988776 488888764211 00 00 00 01234456688999999999999999
Q ss_pred ecceeeeccccCCCCe
Q 010501 165 EGIYALSEKLRPLIDL 180 (509)
Q Consensus 165 EGi~aL~dElr~lLDl 180 (509)
++.+++.|||...+|.
T Consensus 169 ~p~lllLDEPt~~LD~ 184 (264)
T PRK14243 169 QPEVILMDEPCSALDP 184 (264)
T ss_pred CCCEEEEeCCCccCCH
Confidence 9999999999999997
No 248
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=99.51 E-value=1.8e-14 Score=139.83 Aligned_cols=137 Identities=18% Similarity=0.197 Sum_probs=106.7
Q ss_pred eeeeEEEeCc---EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccc
Q 010501 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (509)
Q Consensus 40 ~~~lsf~~g~---~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i 108 (509)
.+++++.++. ..+++++++.+.+|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+.+
T Consensus 14 ~~~l~~~~~~~~~~~~l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 90 (226)
T cd03248 14 FQNVTFAYPTRPDTLVLQDVSFTLHPGE---VTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKV 90 (226)
T ss_pred EEEEEEEeCCCCCCccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhE
Confidence 4667777653 369999999999999 99999999999999999999998 78999999986421 2357
Q ss_pred cccCCCCCCCchhhHHHHHHhhccCcc-------------------e--ec-cccccCCCCcCCCeeeeecCccEEEEec
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKEGKA-------------------V--QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~g~~-------------------i--~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEG 166 (509)
++++|++..++ .++.+++........ . .. +..+......|+|+.+++..++.++.++
T Consensus 91 ~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p 169 (226)
T cd03248 91 SLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNP 169 (226)
T ss_pred EEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 88999887665 578888753211000 0 00 1223344567899999999999999999
Q ss_pred ceeeeccccCCCCe
Q 010501 167 IYALSEKLRPLIDL 180 (509)
Q Consensus 167 i~aL~dElr~lLDl 180 (509)
.+++.|||...+|.
T Consensus 170 ~llllDEPt~~LD~ 183 (226)
T cd03248 170 QVLILDEATSALDA 183 (226)
T ss_pred CEEEEeCCcccCCH
Confidence 99999999999998
No 249
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.51 E-value=1.3e-14 Score=153.19 Aligned_cols=134 Identities=19% Similarity=0.152 Sum_probs=109.6
Q ss_pred EEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCc----cCc-----------ccc
Q 010501 44 SFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY----NDS-----------SRI 107 (509)
Q Consensus 44 sf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y----~~~-----------~r~ 107 (509)
...+|...+++++||.+++|+ +++|+|+||||||||+++|++++ |..|.|.+|+. ... .+.
T Consensus 31 ~~~~g~~~~l~~vsf~i~~Ge---i~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 31 LDETGLVVGVANASLDIEEGE---ICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHhhCCEEEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 345677889999999999999 99999999999999999999998 78999999974 110 135
Q ss_pred ccccCCCCCCCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 108 IDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 108 i~~~fq~p~~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
++++||++.++++.++.+|+..... +. .+.. +..+...++.|+|+.+++..+++++.++.+++
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILL 187 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDADILL 187 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8999999999999999999875321 10 0111 23345556789999999999999999999999
Q ss_pred eccccCCCCe
Q 010501 171 SEKLRPLIDL 180 (509)
Q Consensus 171 ~dElr~lLDl 180 (509)
.|||...+|.
T Consensus 188 lDEPts~LD~ 197 (382)
T TIGR03415 188 MDEPFSALDP 197 (382)
T ss_pred EECCCccCCH
Confidence 9999999998
No 250
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=99.51 E-value=2.5e-14 Score=140.59 Aligned_cols=160 Identities=11% Similarity=0.070 Sum_probs=112.9
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC---CCeeEEEECCccCcc--------ccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDSS--------RII 108 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll---p~~g~I~~D~y~~~~--------r~i 108 (509)
.+++++.++...+++++||.+++|+ +++|+|+||||||||+++|+++. |..|.|.+++..... ..+
T Consensus 4 ~~nl~~~~~~~~~l~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 4 IKDLHVSVEDKAILRGLNLEVRPGE---VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred EEEEEEEeCCeeeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 4677888877789999999999999 99999999999999999999994 688999999864321 236
Q ss_pred cccCCCCCCCchhhHHHHHHhh----cc--C-----------------cceecc-c-cccCC-CCcCCCeeeeecCccEE
Q 010501 109 DGNFDDPRLTDYDTLLENIRGL----KE--G-----------------KAVQVP-I-YDFKS-SSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L----~~--g-----------------~~i~~P-~-yD~~~-~~rsgg~~~~v~~a~VL 162 (509)
++++|++..++..+....+... .. . .....| . .+... ...|+|+.+++..++++
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral 160 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA 160 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHH
Confidence 7778887655433322221110 00 0 000111 1 11112 26889999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHH
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~ 209 (509)
+.++.+++.|||.+.+|. .....+..+.+.+...|.++.-
T Consensus 161 ~~~p~illLDEPt~~LD~-------~~~~~l~~~l~~l~~~~~tiii 200 (248)
T PRK09580 161 VLEPELCILDESDSGLDI-------DALKIVADGVNSLRDGKRSFII 200 (248)
T ss_pred HcCCCEEEEeCCCccCCH-------HHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999998 3445555555666555555433
No 251
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=99.51 E-value=2.5e-14 Score=143.46 Aligned_cols=161 Identities=10% Similarity=0.089 Sum_probs=115.0
Q ss_pred eeeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----cccccccCC
Q 010501 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----~r~i~~~fq 113 (509)
.+++++.++ ...+++++||.+.+|+ +++|+||||||||||+++|++++ |..|.|.++|.... .+.+++++|
T Consensus 9 ~~~l~~~~~~~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 9 VNDVTVTWRNGHTALRDASFTVPGGS---IAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred EEeEEEEecCCcEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 456777774 5679999999999999 99999999999999999999998 78999999986432 124778888
Q ss_pred CCCCC--chhhHHHHHHhhc---------cC-----------cceec-cccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 114 DPRLT--DYDTLLENIRGLK---------EG-----------KAVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 114 ~p~~~--d~~tl~e~L~~L~---------~g-----------~~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
++... ....+.+++.... .. ..... +..+...+..|+|+.+++..+++++.++.+++
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~lll 165 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVIL 165 (272)
T ss_pred ccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 76431 1112333332100 00 00011 12244556789999999999999999999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHH
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~V 210 (509)
.|||...+|. ...+.+..+.+++...|.++.-+
T Consensus 166 lDEPt~~LD~-------~~~~~l~~~L~~~~~~g~tviiv 198 (272)
T PRK15056 166 LDEPFTGVDV-------KTEARIISLLRELRDEGKTMLVS 198 (272)
T ss_pred EeCCCccCCH-------HHHHHHHHHHHHHHhCCCEEEEE
Confidence 9999999998 34556666666666556654333
No 252
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.51 E-value=1.9e-14 Score=155.32 Aligned_cols=158 Identities=9% Similarity=0.051 Sum_probs=117.0
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGN 111 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~~ 111 (509)
.+++++.++...+|+++||.+.+|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+.++++
T Consensus 6 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 6 ISQGTFRLSDTKTLQLPSLTLNAGD---SWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred EEeEEEEcCCeeecccceEEEcCCC---EEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 4678888887789999999999999 99999999999999999999998 78999998775321 1236788
Q ss_pred CCCCCCC---c-----hhhHHHHHHh----------hccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeecc
Q 010501 112 FDDPRLT---D-----YDTLLENIRG----------LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (509)
Q Consensus 112 fq~p~~~---d-----~~tl~e~L~~----------L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dE 173 (509)
+|++... . ..++.+++.. +.+.-.+. ...+...+..|+|+.+++..+++++.++.++++||
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE 161 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGIT-ALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDE 161 (490)
T ss_pred ccCcchhhcccchhhccccHHHhcccchhHHHHHHHHHHHcCCH-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 8875421 0 2344444321 11111111 23455667899999999999999999999999999
Q ss_pred ccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHH
Q 010501 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (509)
Q Consensus 174 lr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e 208 (509)
|.+.+|. .....+..+.+++.+.|.++.
T Consensus 162 Pt~~LD~-------~~~~~l~~~l~~~~~~g~tvi 189 (490)
T PRK10938 162 PFDGLDV-------ASRQQLAELLASLHQSGITLV 189 (490)
T ss_pred CcccCCH-------HHHHHHHHHHHHHHhcCCeEE
Confidence 9999998 455566666666665565543
No 253
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.51 E-value=1.6e-14 Score=160.85 Aligned_cols=159 Identities=16% Similarity=0.176 Sum_probs=122.5
Q ss_pred eeeeEEEeC----cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccC-----------
Q 010501 40 EDTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND----------- 103 (509)
Q Consensus 40 ~~~lsf~~g----~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~----------- 103 (509)
.+++++.++ ...++++|||.+.+|+ ++||+|+||||||||+++|++++ |..|.|.+++...
T Consensus 15 v~~l~~~y~~~~~~~~~l~~is~~v~~Ge---~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 15 VENLNIAFMQEQQKIAAVRNLSFSLQRGE---TLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred EeceEEEecCCCCceeEEEeeEEEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 466777664 3579999999999999 99999999999999999999998 6889998876310
Q ss_pred --c--------cccccccCCCC--CCCchhhHHHHHHhhcc---C--------------cceecc----ccccCCCCcCC
Q 010501 104 --S--------SRIIDGNFDDP--RLTDYDTLLENIRGLKE---G--------------KAVQVP----IYDFKSSSRIG 150 (509)
Q Consensus 104 --~--------~r~i~~~fq~p--~~~d~~tl~e~L~~L~~---g--------------~~i~~P----~yD~~~~~rsg 150 (509)
. .+.++++||+| ..++..++.+++..... + ..+..+ ..+...++.|+
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSg 171 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSG 171 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCH
Confidence 0 12578999998 45666788888764210 1 011222 23556678999
Q ss_pred CeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCHH
Q 010501 151 YRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPE 208 (509)
Q Consensus 151 g~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~e 208 (509)
|+.+++..+++++.++.+++.|||+..||. .....+.++.+++.+. |.++.
T Consensus 172 Gq~QRv~iA~AL~~~P~lLllDEPt~~LD~-------~~~~~l~~ll~~l~~~~g~tvi 223 (623)
T PRK10261 172 GMRQRVMIAMALSCRPAVLIADEPTTALDV-------TIQAQILQLIKVLQKEMSMGVI 223 (623)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCccCH-------HHHHHHHHHHHHHHHhcCCEEE
Confidence 999999999999999999999999999998 4556677788887654 77643
No 254
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=2.8e-14 Score=143.82 Aligned_cols=137 Identities=14% Similarity=0.098 Sum_probs=109.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccCc--------c
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS--------S 105 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp------~~g~I~~D~y~~~--------~ 105 (509)
.+++++.++...++++++|.+++|+ +++|+|+||||||||+++|+++++ ..|.|.+++.... .
T Consensus 24 i~nl~~~~~~~~il~~vs~~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~ 100 (276)
T PRK14271 24 AVNLTLGFAGKTVLDQVSMGFPARA---VTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFR 100 (276)
T ss_pred EeeEEEEECCEEEeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHh
Confidence 4678888888889999999999999 999999999999999999999983 5899999986431 2
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhcc--C----cc-----------eecc-----ccccCCCCcCCCeeeeecCccEEE
Q 010501 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--G----KA-----------VQVP-----IYDFKSSSRIGYRTLEVPSSRIVI 163 (509)
Q Consensus 106 r~i~~~fq~p~~~d~~tl~e~L~~L~~--g----~~-----------i~~P-----~yD~~~~~rsgg~~~~v~~a~VLI 163 (509)
+.+++++|++..++ .++.+++..... . .. .... ..+......|+|+.+++..+++++
T Consensus 101 ~~i~~v~q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~ 179 (276)
T PRK14271 101 RRVGMLFQRPNPFP-MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLA 179 (276)
T ss_pred hheEEeccCCccCC-ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHh
Confidence 35789999998877 788888864311 0 00 0011 122334568899999999999999
Q ss_pred EecceeeeccccCCCCe
Q 010501 164 IEGIYALSEKLRPLIDL 180 (509)
Q Consensus 164 VEGi~aL~dElr~lLDl 180 (509)
.++.+++.|||...+|.
T Consensus 180 ~~p~lllLDEPt~~LD~ 196 (276)
T PRK14271 180 VNPEVLLLDEPTSALDP 196 (276)
T ss_pred cCCCEEEEcCCcccCCH
Confidence 99999999999999997
No 255
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=99.51 E-value=1.1e-14 Score=138.90 Aligned_cols=163 Identities=18% Similarity=0.223 Sum_probs=119.3
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCCC
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDD 114 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq~ 114 (509)
+.+.|.|+..+. ..++.++.|+ +++|+||||||||||++.|+++. |..|.|.++|.+.. .|-+++.||+
T Consensus 5 ~~V~~~y~~~~~--~fdl~v~~ge---~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQE 79 (231)
T COG3840 5 DDVRFSYGHLPM--RFDLTVPAGE---IVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQE 79 (231)
T ss_pred cceEEeeCcceE--EEEEeecCCc---EEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhc
Confidence 344554433222 2356778999 99999999999999999999998 99999999998543 3568899999
Q ss_pred CCCCchhhHHHHHHhhcc-Cc--------c-------eecc-ccccCCCCcCCCeeeeecCccEEEEecceeeeccccCC
Q 010501 115 PRLTDYDTLLENIRGLKE-GK--------A-------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (509)
Q Consensus 115 p~~~d~~tl~e~L~~L~~-g~--------~-------i~~P-~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~l 177 (509)
.++|.+.++.+|+..-.. +- . +-.. ..++-..+.|||++++++.+++++=|-..+|+|||++.
T Consensus 80 nNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsA 159 (231)
T COG3840 80 NNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSA 159 (231)
T ss_pred cccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhh
Confidence 999999999999975332 10 0 1111 23445678999999999999999999999999999999
Q ss_pred CCeEEEeecCchHHHHHHHHHHH-HHcCCCHHHHHHHHH
Q 010501 178 IDLRVSVTGGVHFDLVKRVFRDI-QRVGQEPEEIIHQIS 215 (509)
Q Consensus 178 LDlkIfVd~d~dirLiRRI~RD~-~erG~t~e~Vi~~y~ 215 (509)
+|... ..-...+..++ .+++.|+.-|.|+-.
T Consensus 160 LdP~L-------R~eMl~Lv~~l~~E~~~TllmVTH~~~ 191 (231)
T COG3840 160 LDPAL-------RAEMLALVSQLCDERKMTLLMVTHHPE 191 (231)
T ss_pred cCHHH-------HHHHHHHHHHHHHhhCCEEEEEeCCHH
Confidence 99732 11122233333 467877666655543
No 256
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=2e-14 Score=156.82 Aligned_cols=134 Identities=15% Similarity=0.105 Sum_probs=106.3
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~ 118 (509)
.+++++.++...+++++||.+.+|+ +++|+||||||||||+++|++++ |..|.|.+++. ..+++++|++..+
T Consensus 4 i~~ls~~~~~~~il~~vsl~i~~Ge---~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~----~~i~~~~q~~~~~ 76 (530)
T PRK15064 4 TANITMQFGAKPLFENISVKFGGGN---RYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN----ERLGKLRQDQFAF 76 (530)
T ss_pred EEEEEEEeCCcEeEeCCEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----CEEEEEeccCCcC
Confidence 4678888888889999999999999 99999999999999999999998 78899998863 3477888888777
Q ss_pred chhhHHHHHHhhcc-------------C-----------------------------------cceeccc--cccCCCCc
Q 010501 119 DYDTLLENIRGLKE-------------G-----------------------------------KAVQVPI--YDFKSSSR 148 (509)
Q Consensus 119 d~~tl~e~L~~L~~-------------g-----------------------------------~~i~~P~--yD~~~~~r 148 (509)
+..++.+++..... + ..+..+. .+...+..
T Consensus 77 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 156 (530)
T PRK15064 77 EEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEV 156 (530)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhc
Confidence 76666666542100 0 0011111 12334678
Q ss_pred CCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 149 IGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 149 sgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
|+|+.+++..+++++.++.++|+|||++.+|.
T Consensus 157 SgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~ 188 (530)
T PRK15064 157 APGWKLRVLLAQALFSNPDILLLDEPTNNLDI 188 (530)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCcccCH
Confidence 99999999999999999999999999999997
No 257
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=99.51 E-value=3.6e-14 Score=142.40 Aligned_cols=137 Identities=19% Similarity=0.140 Sum_probs=108.7
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp------~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...++++++|.+++|+ +++|+|+||||||||+++|+++++ ..|.|.+++....
T Consensus 28 ~~nl~~~~~~~~il~~vs~~i~~Ge---~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~ 104 (272)
T PRK14236 28 VRNLNLFYGDKQALFDISMRIPKNR---VTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAEL 104 (272)
T ss_pred EEEEEEEECCeeEeeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHH
Confidence 4678888877889999999999999 999999999999999999999973 5899999986432
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--Cc----c----e-------ecc-----ccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK----A----V-------QVP-----IYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g~----~----i-------~~P-----~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
++.+++++|++..++. ++.+++..... +. . + ... ..+......|+|+.+++..++++
T Consensus 105 ~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral 183 (272)
T PRK14236 105 RRRVGMVFQRPNPFPK-SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAI 183 (272)
T ss_pred hccEEEEecCCccCcc-cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 2357889999888775 88888864211 10 0 0 010 12233456788999999999999
Q ss_pred EEecceeeeccccCCCCe
Q 010501 163 IIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDl 180 (509)
+.++.+++.|||...+|.
T Consensus 184 ~~~p~lllLDEPt~gLD~ 201 (272)
T PRK14236 184 AIEPEVLLLDEPTSALDP 201 (272)
T ss_pred HCCCCEEEEeCCcccCCH
Confidence 999999999999999997
No 258
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.51 E-value=2.4e-14 Score=143.99 Aligned_cols=137 Identities=16% Similarity=0.170 Sum_probs=107.8
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp------~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|+++++ ..|.|.+++....
T Consensus 23 ~~nl~~~~~~~~~l~~vs~~i~~Ge---~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~ 99 (274)
T PRK14265 23 VEGVKVFYGGFLALVDVHLKIPAKK---IIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKL 99 (274)
T ss_pred EeeEEEEeCCeEEEeeeeeEEcCCC---EEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHH
Confidence 3677887777789999999999999 999999999999999999999872 4799999986431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--Cc-------------ceec-----cccccCCCCcCCCeeeeecCccEEEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK-------------AVQV-----PIYDFKSSSRIGYRTLEVPSSRIVII 164 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g~-------------~i~~-----P~yD~~~~~rsgg~~~~v~~a~VLIV 164 (509)
.+.+++++|++..++. ++.+++..... +. .... ...+......|+|+.+++..+++++.
T Consensus 100 ~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~ 178 (274)
T PRK14265 100 RRQVGMVFQRPNPFPK-SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAM 178 (274)
T ss_pred hhcEEEEccCCccccc-cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhh
Confidence 1357889999887764 78888754211 00 0000 12233446688999999999999999
Q ss_pred ecceeeeccccCCCCe
Q 010501 165 EGIYALSEKLRPLIDL 180 (509)
Q Consensus 165 EGi~aL~dElr~lLDl 180 (509)
++.+++.|||...+|.
T Consensus 179 ~p~lllLDEPt~~LD~ 194 (274)
T PRK14265 179 KPDVLLMDEPCSALDP 194 (274)
T ss_pred CCCEEEEeCCcccCCH
Confidence 9999999999999997
No 259
>TIGR00318 cyaB adenylyl cyclase CyaB, putative. The protein CyaB from Aeromonas hydrophila is a second adenylyl cyclase from that species, as demonstrated by complementation in E. coli and by assay of the enzymatic properties of purified recombinant protein. It has no detectable homology to any other protein of known function, and has several unusual properties, including an optimal temperature of 65 degrees and an optimal pH of 9.5. A cluster of uncharaterized archaeal homologs may be orthologous and serve (under certain circumstances) to produce the regulatory metabolite cyclic AMP (cAMP).
Probab=99.51 E-value=1.2e-13 Score=130.85 Aligned_cols=149 Identities=19% Similarity=0.262 Sum_probs=127.3
Q ss_pred HHHHHHHhccccc--ccccceeeEEEeCCCCCccccccceeeeccCceEEEEeeecccCCCeEeccccceeec--eeecc
Q 010501 262 VDEIKAVMSKEHT--ETTEETYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDSPFIISPRITFEVS--VRLLG 337 (509)
Q Consensus 262 ~~~i~~~l~~~~~--~~~~~~~diyl~pp~~~~~~~~~~ir~r~~~~~~~l~~~~~i~~~~f~~~P~~~f~v~--~~~~~ 337 (509)
.+.+...|..... .......|+|+.+|+-.......|+|.|..++++.|.+..+-.+..+.+++.++++|+ ..+..
T Consensus 13 ~~~~~~~L~~~g~~~~~~~~q~D~Yfd~p~~~l~~~~~~LRiR~~~~~~~lT~Kgp~~~~~~~~~~E~e~~v~d~~~~~~ 92 (174)
T TIGR00318 13 KEKVVEKLKNKGFKFIKKEFQHDIYFSNPCRDFASTDEALRIRKLTGEKFVTYKGPKIDNESKTRKEIEFKIEDIENALQ 92 (174)
T ss_pred HHHHHHHHHhcCcccccccceEEEeecCCCcchhhCCcEEEEEEcCCcEEEEEeCCccCCcceEEEEEEEEECCHHHHHH
Confidence 3455555544322 2333466999999999988888999999999999999988888888999999999996 56666
Q ss_pred cccccCceEEEEEEeccceeecCcEEEEehhhhhcCcceEEEeccCh---------hHHHHHHhhhcCccCccchhHHHH
Q 010501 338 GLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGRDR---------LYVKYVGEQLGLDGSYVPRTYIEQ 408 (509)
Q Consensus 338 gl~~lgy~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~---------~~v~~~~~~l~~~~~~~~~~y~~~ 408 (509)
.|.+|||+.++.+.....+|.-|.+.|++|++++|+ +|+.|.|... +.+.++|.+|||++..+++||+|+
T Consensus 93 iL~~LG~~~~~~v~K~R~~~~l~~~~i~lD~v~~lG-~FvEIE~~~~~~~~~~~~~~~i~~~~~~LGl~~~~~~~sY~el 171 (174)
T TIGR00318 93 ILKKLGFKKVYEVIKKRRIYQTNELNVSIDDVEGLG-FFLEIEKIINNINDKDLALEEIFEIINQLGIKDNIERRSYLEL 171 (174)
T ss_pred HHHHCCCeEEEEEEEEEEEEEECCEEEEEEccCCCc-cEEEEEEecCCccchHHHHHHHHHHHHHcCCCcCcccccHHHH
Confidence 788999999999999999999999999999999997 9999999865 478999999999999999999999
Q ss_pred HHH
Q 010501 409 IQL 411 (509)
Q Consensus 409 ~~~ 411 (509)
++|
T Consensus 172 l~~ 174 (174)
T TIGR00318 172 LSL 174 (174)
T ss_pred hhC
Confidence 864
No 260
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=3.2e-14 Score=140.33 Aligned_cols=151 Identities=15% Similarity=0.208 Sum_probs=115.3
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC---C---CeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P---SIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll---p---~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|+++. | ..|.|.+|+....
T Consensus 6 ~~~v~~~~~~~~~l~~~s~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 6 VENLNTYFDDAHILKNVNLDIPKNS---VTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEeEEEEeCCeEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 4677777777789999999999999 99999999999999999999975 3 6899999997532
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--C----cce-----------ec-----cccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G----KAV-----------QV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g----~~i-----------~~-----P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++..++. ++.+++..... + ... .. +..+......|+|+.+++..++++
T Consensus 83 ~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral 161 (250)
T PRK14266 83 RKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTI 161 (250)
T ss_pred hhheEEEecCCccCcc-hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 1357899999988874 88888764211 0 000 00 112334456788999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHH
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ 201 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~ 201 (509)
+..+.+++.|||...+|. ...+.+..+.+++.
T Consensus 162 ~~~p~llllDEP~~gLD~-------~~~~~l~~~l~~~~ 193 (250)
T PRK14266 162 AVSPEVILMDEPCSALDP-------ISTTKIEDLIHKLK 193 (250)
T ss_pred HcCCCEEEEcCCCccCCH-------HHHHHHHHHHHHHh
Confidence 999999999999999997 33445555555543
No 261
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.50 E-value=1.7e-14 Score=144.67 Aligned_cols=158 Identities=15% Similarity=0.232 Sum_probs=115.5
Q ss_pred cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCCchhhHHHHH
Q 010501 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENI 127 (509)
Q Consensus 49 ~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~d~~tl~e~L 127 (509)
...++++|||.+.+|+ ++||+|.|||||||++++|.++. |+.|.|.++|....... .....+.+
T Consensus 25 ~v~avd~Vsf~i~~ge---~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~------------~~~~~~~v 89 (268)
T COG4608 25 YVKAVDGVSFSIKEGE---TLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS------------KEERRERV 89 (268)
T ss_pred ceEEecceeEEEcCCC---EEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc------------hhHHHHHH
Confidence 4689999999999999 99999999999999999999999 79999999987533211 11122222
Q ss_pred HhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCC
Q 010501 128 RGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQE 206 (509)
Q Consensus 128 ~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t 206 (509)
..+.+.-....-.+++..|+.|||+.|++..++++++++.++..|||.+++|..+ ...+..+..|+++ .|.+
T Consensus 90 ~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSi-------qaqIlnLL~dlq~~~~lt 162 (268)
T COG4608 90 LELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSV-------QAQILNLLKDLQEELGLT 162 (268)
T ss_pred HHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhH-------HHHHHHHHHHHHHHhCCe
Confidence 2222111122224566678999999999999999999999999999999999843 3455666667664 4776
Q ss_pred H------HHHHHHHHHhhhhHHHHhhcC
Q 010501 207 P------EEIIHQISETVYPMYKAFIEP 228 (509)
Q Consensus 207 ~------e~Vi~~y~~~V~P~~~~fIeP 228 (509)
. ..+..++.+++.-||..-|..
T Consensus 163 ~lFIsHDL~vv~~isdri~VMy~G~iVE 190 (268)
T COG4608 163 YLFISHDLSVVRYISDRIAVMYLGKIVE 190 (268)
T ss_pred EEEEEEEHHhhhhhcccEEEEecCceeE
Confidence 3 355566666666666655543
No 262
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.50 E-value=2.1e-14 Score=143.72 Aligned_cols=158 Identities=13% Similarity=0.181 Sum_probs=114.5
Q ss_pred eeeeEEEeC---------cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----
Q 010501 40 EDTLSFEKG---------FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----- 104 (509)
Q Consensus 40 ~~~lsf~~g---------~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----- 104 (509)
.+++++.++ ...+++++||.+++|+ +++|+||||||||||+++|++++ |..|.|.+++....
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge---~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 7 VRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQ---TLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred EeceEEEecCCCCcccccccceeeeeeEEecCCC---EEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 466777664 2469999999999999 99999999999999999999999 78999999986432
Q ss_pred --cccccccCCCCC--CCchhhHHHHHHhhc-c--C--------------cceec-c-ccccCCCCcCCCeeeeecCccE
Q 010501 105 --SRIIDGNFDDPR--LTDYDTLLENIRGLK-E--G--------------KAVQV-P-IYDFKSSSRIGYRTLEVPSSRI 161 (509)
Q Consensus 105 --~r~i~~~fq~p~--~~d~~tl~e~L~~L~-~--g--------------~~i~~-P-~yD~~~~~rsgg~~~~v~~a~V 161 (509)
.+.+++++|++. .++..++.+++.... . + ..+.. + ..+......|+|+.+++..+++
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lara 163 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARA 163 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHH
Confidence 134788888874 344445555553210 0 0 00111 1 1233346788999999999999
Q ss_pred EEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCH
Q 010501 162 VIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (509)
Q Consensus 162 LIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~ 207 (509)
++.++.++++|||...+|. .....+..+++++.. .|.++
T Consensus 164 l~~~p~lllLDEPt~~LD~-------~~~~~l~~~l~~~~~~~g~tv 203 (267)
T PRK15112 164 LILRPKVIIADEALASLDM-------SMRSQLINLMLELQEKQGISY 203 (267)
T ss_pred HHhCCCEEEEcCCcccCCH-------HHHHHHHHHHHHHHHHcCcEE
Confidence 9999999999999999997 344455555556544 35554
No 263
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.50 E-value=4.6e-14 Score=139.36 Aligned_cols=150 Identities=17% Similarity=0.231 Sum_probs=113.4
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhh---CC---CeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF---MP---SIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~l---lp---~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...+++++||.+.+|+ +++|+|+||||||||+++|+++ .| ..|.|.+++....
T Consensus 6 ~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14245 6 ARDVNFWYGDFHALKGISMEIEEKS---VVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDEL 82 (250)
T ss_pred EEEEEEEECCEeEEeeeeEEEeCCC---EEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHH
Confidence 4677888877889999999999999 9999999999999999999986 33 3799999987432
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--C----c-----------ceecc-----ccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G----K-----------AVQVP-----IYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g----~-----------~i~~P-----~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++..++ .++.+++..... + . ....+ ..+......|+|+.+++..++.+
T Consensus 83 ~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral 161 (250)
T PRK14245 83 RKNVGMVFQRPNPFP-KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAM 161 (250)
T ss_pred hhheEEEecCCccCc-ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 134788999988776 588888764211 0 0 01111 12333456889999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHH
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDI 200 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~ 200 (509)
+.++.+++.|||...+|. .....+..+.+++
T Consensus 162 ~~~p~lllLDEPt~~LD~-------~~~~~l~~~l~~~ 192 (250)
T PRK14245 162 AVSPSVLLMDEPASALDP-------ISTAKVEELIHEL 192 (250)
T ss_pred hcCCCEEEEeCCCccCCH-------HHHHHHHHHHHHH
Confidence 999999999999999997 3344445555444
No 264
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.50 E-value=1.7e-14 Score=139.01 Aligned_cols=166 Identities=16% Similarity=0.194 Sum_probs=117.2
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc-------cccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGN 111 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~-------r~i~~~ 111 (509)
..+++..++...+++++|+.+++|+ +.+|+||||||||||+-++++++ .+.|.|.+|++.... +.+...
T Consensus 4 i~nv~K~y~~~~vl~~isl~i~~g~---iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 4 IENVSKSYGTKVVLDDVSLDIPKGG---ITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred ehhhhHhhCCEEeeccceeeecCCc---eeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 3567788899999999999999999 99999999999999999999999 589999999985432 122222
Q ss_pred CCCCCCCchhhHHHHHHhhc----cCcc---------------eeccccccCCCCcCCCeeeeecCccEEEEecceeeec
Q 010501 112 FDDPRLTDYDTLLENIRGLK----EGKA---------------VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (509)
Q Consensus 112 fq~p~~~d~~tl~e~L~~L~----~g~~---------------i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d 172 (509)
-|+....-..++++.+.+-+ .|+. -..+.-|+-..+.|||+.++.-.+-|+..|-.|+|+|
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLD 160 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLD 160 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEec
Confidence 23222222233333333221 1110 0112234445678999999999999999999999999
Q ss_pred cccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHH
Q 010501 173 KLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (509)
Q Consensus 173 Elr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y 214 (509)
||.+.||+| ..+....-++|-..+-|++..-|+|.+
T Consensus 161 EPLNNLDmk------Hsv~iMk~Lrrla~el~KtiviVlHDI 196 (252)
T COG4604 161 EPLNNLDMK------HSVQIMKILRRLADELGKTIVVVLHDI 196 (252)
T ss_pred CcccccchH------HHHHHHHHHHHHHHHhCCeEEEEEecc
Confidence 999999997 333344444444556777766666654
No 265
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=99.50 E-value=2.7e-14 Score=159.11 Aligned_cols=159 Identities=16% Similarity=0.121 Sum_probs=122.6
Q ss_pred eeeeEEEeC-----------cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---
Q 010501 40 EDTLSFEKG-----------FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--- 104 (509)
Q Consensus 40 ~~~lsf~~g-----------~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--- 104 (509)
.+++++.++ ...+++++||.+.+|+ ++||+|+||||||||+++|++++ |..|.|.+++....
T Consensus 316 ~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 316 VRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGE---TLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred EeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 356777664 2579999999999999 99999999999999999999998 78999999886321
Q ss_pred -------cccccccCCCC--CCCchhhHHHHHHhhc--cC----c-----------ceecc--ccccCCCCcCCCeeeee
Q 010501 105 -------SRIIDGNFDDP--RLTDYDTLLENIRGLK--EG----K-----------AVQVP--IYDFKSSSRIGYRTLEV 156 (509)
Q Consensus 105 -------~r~i~~~fq~p--~~~d~~tl~e~L~~L~--~g----~-----------~i~~P--~yD~~~~~rsgg~~~~v 156 (509)
.+.++++||+| ..++..++.+++.... .+ . .+..+ ..+...++.|+|+.+++
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv 472 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRI 472 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHH
Confidence 23578999997 3666678888875411 01 0 11222 24556678999999999
Q ss_pred cCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCHH
Q 010501 157 PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPE 208 (509)
Q Consensus 157 ~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~e 208 (509)
..+++++.++.+++.|||...||. .....+..+.+++.+. |.++.
T Consensus 473 ~iAraL~~~p~llllDEPts~LD~-------~~~~~i~~ll~~l~~~~g~tvi 518 (623)
T PRK10261 473 CIARALALNPKVIIADEAVSALDV-------SIRGQIINLLLDLQRDFGIAYL 518 (623)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCH-------HHHHHHHHHHHHHHHhcCCEEE
Confidence 999999999999999999999998 3455666777776553 66643
No 266
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.50 E-value=1.7e-14 Score=157.39 Aligned_cols=164 Identities=17% Similarity=0.196 Sum_probs=122.4
Q ss_pred eeeeEEEeC----cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccCc-----
Q 010501 40 EDTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS----- 104 (509)
Q Consensus 40 ~~~lsf~~g----~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp------~~g~I~~D~y~~~----- 104 (509)
.+++++.++ ...+++++||.+.+|+ +++|+||||||||||+++|+++++ ..|.|.+++....
T Consensus 8 ~~~l~~~~~~~~~~~~~l~~isl~i~~Ge---~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 8 IENLSVAFRQQQTVRTVVNDVSLQIEAGE---TLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred EeceEEEecCCCCceeeeeceEEEEeCCC---EEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 356777775 2579999999999999 999999999999999999999984 5899999886421
Q ss_pred ------cccccccCCCCC--CCchhhHHHHHHhhc---cCc--------------ceeccc----cccCCCCcCCCeeee
Q 010501 105 ------SRIIDGNFDDPR--LTDYDTLLENIRGLK---EGK--------------AVQVPI----YDFKSSSRIGYRTLE 155 (509)
Q Consensus 105 ------~r~i~~~fq~p~--~~d~~tl~e~L~~L~---~g~--------------~i~~P~----yD~~~~~rsgg~~~~ 155 (509)
.+.++++||++. .++..++.+++.... .+. .+..+. .+...++.|+|+.++
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qr 164 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQR 164 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHH
Confidence 135789999975 445566666654211 010 011221 244567889999999
Q ss_pred ecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCHHHHHHH
Q 010501 156 VPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEPEEIIHQ 213 (509)
Q Consensus 156 v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~e~Vi~~ 213 (509)
+..+++++.++.++++|||.+.||. ...+.+..+.+++... |.++.-+.|.
T Consensus 165 v~iAraL~~~p~llllDEPt~~LD~-------~~~~~l~~~l~~l~~~~g~tvi~vtHd 216 (529)
T PRK15134 165 VMIAMALLTRPELLIADEPTTALDV-------SVQAQILQLLRELQQELNMGLLFITHN 216 (529)
T ss_pred HHHHHHHhcCCCEEEEcCCCCccCH-------HHHHHHHHHHHHHHHhcCCeEEEEcCc
Confidence 9999999999999999999999998 4566667777777554 7775544444
No 267
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.50 E-value=1.7e-14 Score=158.89 Aligned_cols=163 Identities=17% Similarity=0.187 Sum_probs=122.0
Q ss_pred eeeeEEE-eCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCc-------ccccccc
Q 010501 40 EDTLSFE-KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDGN 111 (509)
Q Consensus 40 ~~~lsf~-~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~-------~r~i~~~ 111 (509)
.++++|. ++...+|+++||.+++|+ .++|+|+||||||||++.|++++|..|.|.+||.... ++.++++
T Consensus 352 ~~~vsf~~~~~~~vL~~i~l~i~~G~---~vaIvG~SGsGKSTL~~lL~g~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v 428 (588)
T PRK11174 352 AEDLEILSPDGKTLAGPLNFTLPAGQ---RIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELDPESWRKHLSWV 428 (588)
T ss_pred EEeeEEeccCCCeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCcEEEECCEecccCCHHHHHhheEEe
Confidence 4677763 345679999999999999 9999999999999999999999998999999997432 2468999
Q ss_pred CCCCCCCchhhHHHHHHhhccCc---c-------------e-ecc-ccccCC----CCcCCCeeeeecCccEEEEeccee
Q 010501 112 FDDPRLTDYDTLLENIRGLKEGK---A-------------V-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYA 169 (509)
Q Consensus 112 fq~p~~~d~~tl~e~L~~L~~g~---~-------------i-~~P-~yD~~~----~~rsgg~~~~v~~a~VLIVEGi~a 169 (509)
+|+|..|+ .++++|+...+..- . + ..| .||-.. ...|||++|++..+|+++-++..+
T Consensus 429 ~Q~~~LF~-~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~Il 507 (588)
T PRK11174 429 GQNPQLPH-GTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLL 507 (588)
T ss_pred cCCCcCCC-cCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 99998876 58999997653210 0 1 122 244332 247899999999999999999999
Q ss_pred eeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHH
Q 010501 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (509)
Q Consensus 170 L~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y 214 (509)
+.||+++.+|. ...+.+....+... +++|..-+.|+.
T Consensus 508 iLDE~TSaLD~-------~te~~i~~~l~~~~-~~~TvIiItHrl 544 (588)
T PRK11174 508 LLDEPTASLDA-------HSEQLVMQALNAAS-RRQTTLMVTHQL 544 (588)
T ss_pred EEeCCccCCCH-------HHHHHHHHHHHHHh-CCCEEEEEecCh
Confidence 99999999997 23333333333332 455655555544
No 268
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.50 E-value=2.8e-14 Score=156.61 Aligned_cols=134 Identities=16% Similarity=0.124 Sum_probs=109.5
Q ss_pred eeeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCC
Q 010501 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (509)
Q Consensus 40 ~~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~ 117 (509)
.+++++.++ ...+++++||.+++|+ +++|+|+||||||||+++|++.+ |..|.|.+++ ...+++++|+|..
T Consensus 7 ~~nls~~~~~~~~il~~is~~i~~Ge---~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~----~~~i~~v~Q~~~~ 79 (552)
T TIGR03719 7 MNRVSKVVPPKKEILKDISLSFFPGA---KIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP----GIKVGYLPQEPQL 79 (552)
T ss_pred EeeEEEecCCCCeeecCceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC----CCEEEEEeccCCC
Confidence 367888776 6789999999999999 99999999999999999999998 7899998864 2458899999988
Q ss_pred CchhhHHHHHHhh-cc------------------Ccc---------------------------------eeccccccCC
Q 010501 118 TDYDTLLENIRGL-KE------------------GKA---------------------------------VQVPIYDFKS 145 (509)
Q Consensus 118 ~d~~tl~e~L~~L-~~------------------g~~---------------------------------i~~P~yD~~~ 145 (509)
++..++.+++... .. ... ...+..+...
T Consensus 80 ~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 159 (552)
T TIGR03719 80 DPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADV 159 (552)
T ss_pred CCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCch
Confidence 8888888887541 10 000 0012234455
Q ss_pred CCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 146 SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 146 ~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
+..|+|+.+++..+++++.++.++|+|||.+.+|.
T Consensus 160 ~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~ 194 (552)
T TIGR03719 160 TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDA 194 (552)
T ss_pred hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCh
Confidence 67899999999999999999999999999999998
No 269
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.50 E-value=2e-14 Score=135.95 Aligned_cols=138 Identities=17% Similarity=0.178 Sum_probs=114.0
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----------ccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRI 107 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----------~r~ 107 (509)
...+.-.-+...+|++|+|.++.|+ -++|+||||||||||+-.|+++- |+.|.|.+.|.... .+.
T Consensus 13 ~ktvg~~~~~l~IL~~V~L~v~~Ge---~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~ 89 (228)
T COG4181 13 SKTVGQGEGELSILKGVELVVKRGE---TVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARH 89 (228)
T ss_pred hhhhcCCCcceeEeecceEEecCCc---eEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccc
Confidence 3334334456789999999999999 99999999999999999999997 89999999887432 246
Q ss_pred ccccCCCCCCCchhhHHHHHHhhc--cCcc---------------eeccccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 108 IDGNFDDPRLTDYDTLLENIRGLK--EGKA---------------VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 108 i~~~fq~p~~~d~~tl~e~L~~L~--~g~~---------------i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
++++||...+++.++..||+..-. +|+. ..-.+..+.+++.|+|++|+++.++.+..++..++
T Consensus 90 vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLf 169 (228)
T COG4181 90 VGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLF 169 (228)
T ss_pred eeEEEEeeeccccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEe
Confidence 899999999999999999986522 2311 11135677788999999999999999999999999
Q ss_pred eccccCCCCe
Q 010501 171 SEKLRPLIDL 180 (509)
Q Consensus 171 ~dElr~lLDl 180 (509)
.|||+..+|-
T Consensus 170 ADEPTGNLD~ 179 (228)
T COG4181 170 ADEPTGNLDR 179 (228)
T ss_pred ccCCCCCcch
Confidence 9999999985
No 270
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=99.49 E-value=3.4e-14 Score=140.90 Aligned_cols=157 Identities=15% Similarity=0.214 Sum_probs=112.4
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-C----CeeEEEECCccCc-----ccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P----SIAVITMDNYNDS-----SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p----~~g~I~~D~y~~~-----~r~i~ 109 (509)
.+++++.+ ...+++++||.+.+|+ +++|+|+||||||||+++|++++ | ..|.|.+++.... .+.++
T Consensus 7 ~~~l~~~~-~~~il~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 7 LRNIALQA-AQPLVHGVSLTLQRGR---VLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred EeCeEEEe-ccceecceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence 35677766 4579999999999999 99999999999999999999998 6 7899999986432 23578
Q ss_pred ccCCCCC-CC-chhhHHHHHHhhc--cCc------------ceecc----ccccCCCCcCCCeeeeecCccEEEEeccee
Q 010501 110 GNFDDPR-LT-DYDTLLENIRGLK--EGK------------AVQVP----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (509)
Q Consensus 110 ~~fq~p~-~~-d~~tl~e~L~~L~--~g~------------~i~~P----~yD~~~~~rsgg~~~~v~~a~VLIVEGi~a 169 (509)
+++|++. .+ +..++.+++.... .+. .+..+ ..+......|+|+.+++..+++++.++.++
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lL 162 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFI 162 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence 8899874 23 2334444432210 000 01111 124445678999999999999999999999
Q ss_pred eeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCH
Q 010501 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (509)
Q Consensus 170 L~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~ 207 (509)
+.|||...+|. ...+.+..+.+.+.+ .|.++
T Consensus 163 lLDEPt~~LD~-------~~~~~l~~~L~~~~~~~g~ti 194 (254)
T PRK10418 163 IADEPTTDLDV-------VAQARILDLLESIVQKRALGM 194 (254)
T ss_pred EEeCCCcccCH-------HHHHHHHHHHHHHHHhcCcEE
Confidence 99999999997 334455555555543 35554
No 271
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.49 E-value=1.7e-14 Score=141.19 Aligned_cols=146 Identities=16% Similarity=0.130 Sum_probs=111.8
Q ss_pred eeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc--ccccccCCCCCCCchhhHHHHHHh
Q 010501 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--RIIDGNFDDPRLTDYDTLLENIRG 129 (509)
Q Consensus 53 Lk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~--r~i~~~fq~p~~~d~~tl~e~L~~ 129 (509)
++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++..... ...++++|++..++..++.+++..
T Consensus 1 l~~is~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~ 77 (230)
T TIGR01184 1 LKGVNLTIQQGE---FISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIAL 77 (230)
T ss_pred CCceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHH
Confidence 468899999999 99999999999999999999998 789999999875322 224788999988888888888765
Q ss_pred hc----cCc---c-----------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchH
Q 010501 130 LK----EGK---A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHF 190 (509)
Q Consensus 130 L~----~g~---~-----------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~di 190 (509)
.. .+. . ... ...+......|+|+.+++..+++++.++.+++.|||.+.+|. ...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~-------~~~ 150 (230)
T TIGR01184 78 AVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDA-------LTR 150 (230)
T ss_pred HHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCH-------HHH
Confidence 21 110 0 001 122344567899999999999999999999999999999998 345
Q ss_pred HHHHHHHHHHHHc-CCCHH
Q 010501 191 DLVKRVFRDIQRV-GQEPE 208 (509)
Q Consensus 191 rLiRRI~RD~~er-G~t~e 208 (509)
+.+.++.+.+.++ |.++.
T Consensus 151 ~~l~~~l~~~~~~~~~tii 169 (230)
T TIGR01184 151 GNLQEELMQIWEEHRVTVL 169 (230)
T ss_pred HHHHHHHHHHHHhcCCEEE
Confidence 5666666666543 66543
No 272
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=99.49 E-value=2.7e-14 Score=155.03 Aligned_cols=163 Identities=13% Similarity=0.098 Sum_probs=122.2
Q ss_pred eeeeEEEe---CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC--CeeEEEECCccCc--------cc
Q 010501 40 EDTLSFEK---GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDS--------SR 106 (509)
Q Consensus 40 ~~~lsf~~---g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp--~~g~I~~D~y~~~--------~r 106 (509)
.+++++.+ +...+++++||.+++|+ +++|+|+||||||||+++|+++++ ..|.|.+++.... .+
T Consensus 262 ~~~l~~~~~~~~~~~vl~~vsl~i~~Ge---~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 262 VRNLTAWDPVNPHIKRVDDVSFSLRRGE---ILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred EecCccccccccccccccceeeEEcCCc---EEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 35666655 23569999999999999 999999999999999999999983 7999999986422 13
Q ss_pred cccccCCCC---CCCchhhHHHHHHhhc-----c----Cc------------ceecc--ccccCCCCcCCCeeeeecCcc
Q 010501 107 IIDGNFDDP---RLTDYDTLLENIRGLK-----E----GK------------AVQVP--IYDFKSSSRIGYRTLEVPSSR 160 (509)
Q Consensus 107 ~i~~~fq~p---~~~d~~tl~e~L~~L~-----~----g~------------~i~~P--~yD~~~~~rsgg~~~~v~~a~ 160 (509)
.+++++|++ ..++..++.+++.... . .. ..... ..+...+..|+|+++++..++
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~ 418 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAK 418 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHH
Confidence 478899986 3566677777775310 0 00 01111 234445678999999999999
Q ss_pred EEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 161 VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
+++.++.++++|||+..+|. ...+.+.++.+++.+.|.++.-+.|
T Consensus 419 al~~~p~lllLDEPt~~LD~-------~~~~~l~~~l~~l~~~g~tvi~~sH 463 (506)
T PRK13549 419 CLLLNPKILILDEPTRGIDV-------GAKYEIYKLINQLVQQGVAIIVISS 463 (506)
T ss_pred HHhhCCCEEEEcCCCCCcCH-------hHHHHHHHHHHHHHHCCCEEEEECC
Confidence 99999999999999999998 3566677777777777766544333
No 273
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.49 E-value=3.3e-14 Score=154.63 Aligned_cols=137 Identities=22% Similarity=0.227 Sum_probs=111.3
Q ss_pred eeeeEEEeCc-EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc------ccccccc
Q 010501 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGN 111 (509)
Q Consensus 40 ~~~lsf~~g~-~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~------~r~i~~~ 111 (509)
.++++|.|+. ..+|+++||.+++|+ .++|+||||||||||++.|++++ |..|.|.+||.... ++.++++
T Consensus 337 ~~~vsf~Y~~~~~vL~~isl~i~~G~---~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V 413 (529)
T TIGR02868 337 LRDLSFGYPGSPPVLDGVSLDLPPGE---RVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVF 413 (529)
T ss_pred EEEEEEecCCCCceeecceEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEE
Confidence 5788998864 469999999999999 99999999999999999999999 89999999996432 2468999
Q ss_pred CCCCCCCchhhHHHHHHhhccC---c-------------ce-ecc-ccccCC----CCcCCCeeeeecCccEEEEeccee
Q 010501 112 FDDPRLTDYDTLLENIRGLKEG---K-------------AV-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYA 169 (509)
Q Consensus 112 fq~p~~~d~~tl~e~L~~L~~g---~-------------~i-~~P-~yD~~~----~~rsgg~~~~v~~a~VLIVEGi~a 169 (509)
+|+|..|+ .++++|+...... + .+ ..| .||-.. ...|||++|+++.+|+++-++..+
T Consensus 414 ~Q~~~lF~-~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~il 492 (529)
T TIGR02868 414 AQDAHLFD-TTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPIL 492 (529)
T ss_pred ccCccccc-ccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEE
Confidence 99998775 5899998764321 0 01 123 234332 247899999999999999999999
Q ss_pred eeccccCCCCe
Q 010501 170 LSEKLRPLIDL 180 (509)
Q Consensus 170 L~dElr~lLDl 180 (509)
+.||+++.+|.
T Consensus 493 iLDE~TSaLD~ 503 (529)
T TIGR02868 493 LLDEPTEHLDA 503 (529)
T ss_pred EEeCCcccCCH
Confidence 99999999997
No 274
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=1.5e-14 Score=159.86 Aligned_cols=165 Identities=20% Similarity=0.248 Sum_probs=128.1
Q ss_pred eeeeeeEEEeCc---EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cc
Q 010501 38 PIEDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SR 106 (509)
Q Consensus 38 ~i~~~lsf~~g~---~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r 106 (509)
---++++|.|.. .++++++||++++|+ +++++|||||||||++..|.+++ |..|.|.+||.... ++
T Consensus 466 IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe---~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~ 542 (716)
T KOG0058|consen 466 IEFEDVSFAYPTRPDVPVLKNLSFTIRPGE---VVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRR 542 (716)
T ss_pred EEEEEeeeecCCCCCchhhcCceeeeCCCC---EEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHH
Confidence 345788998864 469999999999999 99999999999999999999998 99999999998542 25
Q ss_pred cccccCCCCCCCchhhHHHHHHhhccCc-----------------ceecc-ccccCCC----CcCCCeeeeecCccEEEE
Q 010501 107 IIDGNFDDPRLTDYDTLLENIRGLKEGK-----------------AVQVP-IYDFKSS----SRIGYRTLEVPSSRIVII 164 (509)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~e~L~~L~~g~-----------------~i~~P-~yD~~~~----~rsgg~~~~v~~a~VLIV 164 (509)
.++++-|+|.+|. -++.|||..-...- -...| .||-..+ +.|||++|+++++++|+-
T Consensus 543 ~Ig~V~QEPvLFs-~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr 621 (716)
T KOG0058|consen 543 KIGLVGQEPVLFS-GSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLR 621 (716)
T ss_pred Heeeeeccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhc
Confidence 6899999998775 57888887644311 01123 3555544 468999999999999999
Q ss_pred ecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHH
Q 010501 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (509)
Q Consensus 165 EGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y 214 (509)
++..+++||-++.||. +...+++....... .++|+.-+.|+.
T Consensus 622 ~P~VLILDEATSALDa-------eSE~lVq~aL~~~~-~~rTVlvIAHRL 663 (716)
T KOG0058|consen 622 NPRVLILDEATSALDA-------ESEYLVQEALDRLM-QGRTVLVIAHRL 663 (716)
T ss_pred CCCEEEEechhhhcch-------hhHHHHHHHHHHhh-cCCeEEEEehhh
Confidence 9999999999999997 45556655554433 347766666655
No 275
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.49 E-value=2.7e-14 Score=139.35 Aligned_cols=153 Identities=16% Similarity=0.144 Sum_probs=108.2
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~ 118 (509)
.++++..++...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++......... ....
T Consensus 25 ~~~~~~~~~~~~il~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~-----~~~~ 96 (224)
T cd03220 25 ILGRKGEVGEFWALKDVSFEVPRGE---RIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLLGLG-----GGFN 96 (224)
T ss_pred hhhhhhhcCCeEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhhccc-----ccCC
Confidence 4567778888899999999999999 99999999999999999999998 7899999998643211111 1122
Q ss_pred chhhHHHHHHhhcc--C---c-----------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeE
Q 010501 119 DYDTLLENIRGLKE--G---K-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (509)
Q Consensus 119 d~~tl~e~L~~L~~--g---~-----------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlk 181 (509)
+..++.+++..... + . .... +..+......|+|+.+++..+++++.++.+++.|||...+|.
T Consensus 97 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~- 175 (224)
T cd03220 97 PELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDA- 175 (224)
T ss_pred CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH-
Confidence 33455555543210 0 0 0011 223444567889999999999999999999999999999997
Q ss_pred EEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 182 VSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 182 IfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
...+.+..+.+++...|.++
T Consensus 176 ------~~~~~~~~~l~~~~~~~~ti 195 (224)
T cd03220 176 ------AFQEKCQRRLRELLKQGKTV 195 (224)
T ss_pred ------HHHHHHHHHHHHHHhCCCEE
Confidence 33444455555554445443
No 276
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.49 E-value=5e-14 Score=140.12 Aligned_cols=137 Identities=18% Similarity=0.166 Sum_probs=108.9
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp------~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|+++++ ..|.|.+++....
T Consensus 10 ~~~l~~~~~~~~il~~isl~i~~Ge---~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 86 (259)
T PRK14260 10 VKDLSFYYNTSKAIEGISMDIYRNK---VTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRL 86 (259)
T ss_pred EEEEEEEECCeEeecceEEEEcCCC---EEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhh
Confidence 4678888877889999999999999 999999999999999999999983 3799999986431
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--C----cc-----------eec-----cccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G----KA-----------VQV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g----~~-----------i~~-----P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
...+++++|++..++ .++.+++..... + .. ... ...+......|+|+.+++..++++
T Consensus 87 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral 165 (259)
T PRK14260 87 RRQIGMVFQRPNPFP-MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARAL 165 (259)
T ss_pred hhheEEEecccccCC-ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence 134788999988877 788888764210 0 00 000 112334456788999999999999
Q ss_pred EEecceeeeccccCCCCe
Q 010501 163 IIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDl 180 (509)
+.++.+++.|||...+|.
T Consensus 166 ~~~p~lllLDEPt~~LD~ 183 (259)
T PRK14260 166 AIKPKVLLMDEPCSALDP 183 (259)
T ss_pred hcCCCEEEEcCCCccCCH
Confidence 999999999999999997
No 277
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.49 E-value=3.1e-14 Score=137.66 Aligned_cols=137 Identities=16% Similarity=0.151 Sum_probs=106.1
Q ss_pred eeeeEEEeC--cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g--~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
.+++++.++ ...+++++||.+++|+ +++|+|+||||||||+++|++.. |..|.|.+++.... .+.++
T Consensus 5 ~~~l~~~~~~~~~~~l~~i~~~i~~Ge---~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 5 FKNVSLRYRPNLPPVLKNISFSIKPGE---KVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred EEEEEEecCCCCcccccceEEEECCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 356677664 3479999999999999 99999999999999999999998 78999999987432 24578
Q ss_pred ccCCCCCCCchhhHHHHHHhhccCc---------ceecc-c-----------cccCCCCcCCCeeeeecCccEEEEecce
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEGK---------AVQVP-I-----------YDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g~---------~i~~P-~-----------yD~~~~~rsgg~~~~v~~a~VLIVEGi~ 168 (509)
+.+|++..++ .++.+++....... ..... . .+......|+|+.+++..+++++.++.+
T Consensus 82 ~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~l 160 (221)
T cd03244 82 IIPQDPVLFS-GTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKI 160 (221)
T ss_pred EECCCCcccc-chHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 8999988765 47888875332100 00000 0 1223456788999999999999999999
Q ss_pred eeeccccCCCCe
Q 010501 169 ALSEKLRPLIDL 180 (509)
Q Consensus 169 aL~dElr~lLDl 180 (509)
++.|||...+|.
T Consensus 161 lllDEP~~~LD~ 172 (221)
T cd03244 161 LVLDEATASVDP 172 (221)
T ss_pred EEEeCccccCCH
Confidence 999999999997
No 278
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=99.48 E-value=2.9e-14 Score=155.49 Aligned_cols=158 Identities=16% Similarity=0.169 Sum_probs=119.9
Q ss_pred eeeeEEEeC-----------cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCc----
Q 010501 40 EDTLSFEKG-----------FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS---- 104 (509)
Q Consensus 40 ~~~lsf~~g-----------~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~---- 104 (509)
.+++++.++ ...+++++||.+.+|+ +++|+||||||||||+++|++++|..|.|.+++....
T Consensus 278 ~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLlk~l~Gl~~~~G~i~~~g~~i~~~~~ 354 (529)
T PRK15134 278 VEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGE---TLGLVGESGSGKSTTGLALLRLINSQGEIWFDGQPLHNLNR 354 (529)
T ss_pred ccCcEEEeecCccccccccccceeeecceeEEcCCC---EEEEECCCCCCHHHHHHHHhCcCCCCcEEEECCEEccccch
Confidence 466777663 3579999999999999 9999999999999999999999988999999986321
Q ss_pred ------cccccccCCCCC--CCchhhHHHHHHhhc--cC-----c-----------ceecc--ccccCCCCcCCCeeeee
Q 010501 105 ------SRIIDGNFDDPR--LTDYDTLLENIRGLK--EG-----K-----------AVQVP--IYDFKSSSRIGYRTLEV 156 (509)
Q Consensus 105 ------~r~i~~~fq~p~--~~d~~tl~e~L~~L~--~g-----~-----------~i~~P--~yD~~~~~rsgg~~~~v 156 (509)
++.+++++|++. .++..++.+++.... .+ . .+..+ ..+...+..|+|+.+++
T Consensus 355 ~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv 434 (529)
T PRK15134 355 RQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRI 434 (529)
T ss_pred hhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHH
Confidence 234789999873 566678888876421 00 0 01121 23445578899999999
Q ss_pred cCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHc-CCCH
Q 010501 157 PSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV-GQEP 207 (509)
Q Consensus 157 ~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er-G~t~ 207 (509)
..+++++.++.+++.|||...+|. ...+.+..+.+++.+. |.++
T Consensus 435 ~la~al~~~p~llllDEPt~~LD~-------~~~~~l~~~l~~~~~~~~~tv 479 (529)
T PRK15134 435 AIARALILKPSLIILDEPTSSLDK-------TVQAQILALLKSLQQKHQLAY 479 (529)
T ss_pred HHHHHHhCCCCEEEeeCCccccCH-------HHHHHHHHHHHHHHHhhCCEE
Confidence 999999999999999999999998 3455566666666543 5553
No 279
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=99.48 E-value=3.6e-14 Score=154.42 Aligned_cols=159 Identities=16% Similarity=0.162 Sum_probs=119.9
Q ss_pred eeeeEEEeC-----cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEEC-Cc---c---C---
Q 010501 40 EDTLSFEKG-----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMD-NY---N---D--- 103 (509)
Q Consensus 40 ~~~lsf~~g-----~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D-~y---~---~--- 103 (509)
.+++++.++ ...+++++||.+.+|+ +++|+||||||||||+++|++++ |..|.|.++ +- . .
T Consensus 282 ~~~l~~~~~~~~~~~~~il~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 282 VRNVSKRYISVDRGVVKAVDNVSLEVKEGE---IFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred EeccEEEeccCCCCCceEEeeEEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 466777663 3579999999999999 99999999999999999999998 789999985 41 1 0
Q ss_pred ----ccccccccCCCCCCCchhhHHHHHHhhc----cCc-----------ceecc------ccccCCCCcCCCeeeeecC
Q 010501 104 ----SSRIIDGNFDDPRLTDYDTLLENIRGLK----EGK-----------AVQVP------IYDFKSSSRIGYRTLEVPS 158 (509)
Q Consensus 104 ----~~r~i~~~fq~p~~~d~~tl~e~L~~L~----~g~-----------~i~~P------~yD~~~~~rsgg~~~~v~~ 158 (509)
..+.+++++|++..++..++.+++.... ... ....+ ..+...+..|+|+.+++..
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~l 438 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVAL 438 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHH
Confidence 0234789999988888888988886411 000 01111 1345556889999999999
Q ss_pred ccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCHH
Q 010501 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPE 208 (509)
Q Consensus 159 a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e 208 (509)
+++++.++.+++.|||...+|. ...+.+.++.+++.+ .|.++.
T Consensus 439 aral~~~p~lLllDEPt~~LD~-------~~~~~l~~~l~~l~~~~g~tvi 482 (520)
T TIGR03269 439 AQVLIKEPRIVILDEPTGTMDP-------ITKVDVTHSILKAREEMEQTFI 482 (520)
T ss_pred HHHHhcCCCEEEEeCCcccCCH-------HHHHHHHHHHHHHHHHcCcEEE
Confidence 9999999999999999999998 345556666666644 355543
No 280
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.48 E-value=2.4e-14 Score=146.38 Aligned_cols=173 Identities=20% Similarity=0.316 Sum_probs=128.6
Q ss_pred CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccCc-----------cccccc
Q 010501 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDS-----------SRIIDG 110 (509)
Q Consensus 48 g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp------~~g~I~~D~y~~~-----------~r~i~~ 110 (509)
+...++++|||.+.+|+ ++||+|.|||||||++++|++++| ..|.|.++|.... .+.+++
T Consensus 16 g~v~av~~vs~~i~~GE---~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~m 92 (316)
T COG0444 16 GVVKAVDGVSFELKKGE---ILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAM 92 (316)
T ss_pred ccEEEEeceeEEEcCCc---EEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEE
Confidence 35689999999999999 999999999999999999999995 2578889887321 235789
Q ss_pred cCCCCC--CCchhhHHHHHHh-hcc-C----------------cceec--c--ccccCCCCcCCCeeeeecCccEEEEec
Q 010501 111 NFDDPR--LTDYDTLLENIRG-LKE-G----------------KAVQV--P--IYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 111 ~fq~p~--~~d~~tl~e~L~~-L~~-g----------------~~i~~--P--~yD~~~~~rsgg~~~~v~~a~VLIVEG 166 (509)
+||+|. +.+..++.+++.. ++. . +.+.. | +++.-.|+.|||+.|++..+-++..++
T Consensus 93 IfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P 172 (316)
T COG0444 93 IFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNP 172 (316)
T ss_pred EEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCC
Confidence 999974 3455566555543 111 0 01222 3 677788999999999999999999999
Q ss_pred ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCH------HHHHHHHHHhhhhHHHHhhcCCC
Q 010501 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP------EEIIHQISETVYPMYKAFIEPDL 230 (509)
Q Consensus 167 i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~------e~Vi~~y~~~V~P~~~~fIeP~k 230 (509)
.+++.|||+..||..+ -..+-.+.+++++ .|.++ ..+..++.+++.-||...|....
T Consensus 173 ~LlIADEPTTALDvt~-------QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g 236 (316)
T COG0444 173 KLLIADEPTTALDVTV-------QAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEG 236 (316)
T ss_pred CEEEeCCCcchhhHHH-------HHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeC
Confidence 9999999999999843 3445555555554 67663 45666777777777766554433
No 281
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.48 E-value=5e-14 Score=134.05 Aligned_cols=118 Identities=15% Similarity=0.176 Sum_probs=95.7
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~ 118 (509)
.+++++.++...+++++ +.+++|+ +++|+||||||||||+++|++++ |..|.|.+++.. +++.+|++.
T Consensus 3 ~~~l~~~~~~~~~l~~~-~~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----i~~~~q~~~-- 71 (177)
T cd03222 3 YPDCVKRYGVFFLLVEL-GVVKEGE---VIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT-----PVYKPQYID-- 71 (177)
T ss_pred CCCeEEEECCEEEEccC-cEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE-----EEEEcccCC--
Confidence 36788888888889885 8999999 99999999999999999999998 789999998742 444554431
Q ss_pred chhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHH
Q 010501 119 DYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFR 198 (509)
Q Consensus 119 d~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~R 198 (509)
.|+|+.+++..++.++.++.+++.|||...+|. ...+.+..+.+
T Consensus 72 -----------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~-------~~~~~l~~~l~ 115 (177)
T cd03222 72 -----------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDI-------EQRLNAARAIR 115 (177)
T ss_pred -----------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH-------HHHHHHHHHHH
Confidence 678899999999999999999999999999997 33444455555
Q ss_pred HHHHcC
Q 010501 199 DIQRVG 204 (509)
Q Consensus 199 D~~erG 204 (509)
.+.+++
T Consensus 116 ~~~~~~ 121 (177)
T cd03222 116 RLSEEG 121 (177)
T ss_pred HHHHcC
Confidence 554443
No 282
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=5.1e-14 Score=140.31 Aligned_cols=157 Identities=14% Similarity=0.122 Sum_probs=117.1
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC-C-----eeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-S-----IAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp-~-----~g~I~~D~y~~~--------- 104 (509)
.+++++.++...+++++||.+++|+ +++|+|+||||||||+++|+++.+ . .|.|.+++....
T Consensus 10 ~~nl~~~~~~~~il~~is~~i~~Ge---~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~ 86 (261)
T PRK14258 10 VNNLSFYYDTQKILEGVSMEIYQSK---VTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRL 86 (261)
T ss_pred EeeEEEEeCCeeEeeceEEEEcCCc---EEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHh
Confidence 4677888877789999999999999 999999999999999999999984 2 689999886421
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--C----cc-----------eec-----cccccCCCCcCCCeeeeecCccEE
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G----KA-----------VQV-----PIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g----~~-----------i~~-----P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.+++++|++..++ .++.+++..... + .. ... +..+......|+|+.+++..++.+
T Consensus 87 ~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral 165 (261)
T PRK14258 87 RRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARAL 165 (261)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHH
Confidence 124678899888777 788888764210 0 00 000 112334467889999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCH
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~ 207 (509)
+.++.+++.|||...+|. .....+..+.+.+.. .|.++
T Consensus 166 ~~~p~vllLDEP~~~LD~-------~~~~~l~~~l~~l~~~~~~ti 204 (261)
T PRK14258 166 AVKPKVLLMDEPCFGLDP-------IASMKVESLIQSLRLRSELTM 204 (261)
T ss_pred hcCCCEEEEeCCCccCCH-------HHHHHHHHHHHHHHHhCCCEE
Confidence 999999999999999997 334455555555543 35553
No 283
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=99.47 E-value=5.4e-14 Score=152.70 Aligned_cols=160 Identities=12% Similarity=0.086 Sum_probs=118.5
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------ccccccc
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~~~ 111 (509)
+++++.+ ..+++++||.+.+|+ +++|+||||||||||+++|++++ |..|.|.+++.... .+.++++
T Consensus 269 ~~l~~~~--~~~l~~isl~i~~Ge---~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v 343 (510)
T PRK09700 269 RNVTSRD--RKKVRDISFSVCRGE---ILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYI 343 (510)
T ss_pred eCccccC--CCcccceeEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEc
Confidence 4555533 248999999999999 99999999999999999999998 78999999986421 1347889
Q ss_pred CCCC---CCCchhhHHHHHHhhcc----------C---c------------ceecc--ccccCCCCcCCCeeeeecCccE
Q 010501 112 FDDP---RLTDYDTLLENIRGLKE----------G---K------------AVQVP--IYDFKSSSRIGYRTLEVPSSRI 161 (509)
Q Consensus 112 fq~p---~~~d~~tl~e~L~~L~~----------g---~------------~i~~P--~yD~~~~~rsgg~~~~v~~a~V 161 (509)
+|++ ..++..++.+++..... + . ....+ ..+...+..|+|+++++..+++
T Consensus 344 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAra 423 (510)
T PRK09700 344 TESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKW 423 (510)
T ss_pred cCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHH
Confidence 9874 46667788888753210 0 0 01111 2344456789999999999999
Q ss_pred EEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 162 VIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 162 LIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
++.++.++++|||++.+|. .....+.++.+.+...|.++.-+.|
T Consensus 424 l~~~p~lLlLDEPt~~LD~-------~~~~~l~~~l~~l~~~g~tvi~vsH 467 (510)
T PRK09700 424 LCCCPEVIIFDEPTRGIDV-------GAKAEIYKVMRQLADDGKVILMVSS 467 (510)
T ss_pred HhcCCCEEEECCCCCCcCH-------HHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 9999999999999999998 3455666666666655665433333
No 284
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.47 E-value=9.1e-14 Score=142.07 Aligned_cols=151 Identities=14% Similarity=0.184 Sum_probs=116.1
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC------CCeeEEEECCccCc---------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS--------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll------p~~g~I~~D~y~~~--------- 104 (509)
.+++++.++...+|++++|.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++....
T Consensus 48 i~nl~~~~~~~~iL~~is~~i~~Ge---~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~ 124 (305)
T PRK14264 48 VEDLDVYYGDDHALKGVSMDIPEKS---VTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVEL 124 (305)
T ss_pred EEEEEEEeCCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHH
Confidence 4788888888889999999999999 99999999999999999999997 36899999986432
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--C------------c---c------------eec-----cccccCCCCcCC
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--G------------K---A------------VQV-----PIYDFKSSSRIG 150 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g------------~---~------------i~~-----P~yD~~~~~rsg 150 (509)
.+.+++++|++..++ .++.+++..... + . . ... ...+......|+
T Consensus 125 ~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg 203 (305)
T PRK14264 125 RKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSG 203 (305)
T ss_pred hhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCH
Confidence 135788999988776 488888764211 0 0 0 000 112344567889
Q ss_pred CeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHH
Q 010501 151 YRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ 201 (509)
Q Consensus 151 g~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~ 201 (509)
|+.+++..+++++.++.++|.|||...||. .....+..+++++.
T Consensus 204 Gq~qrv~LAraL~~~p~lLLLDEPtsgLD~-------~~~~~l~~~L~~~~ 247 (305)
T PRK14264 204 GQQQRLCIARCLAVDPEVILMDEPASALDP-------IATSKIEDLIEELA 247 (305)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCH-------HHHHHHHHHHHHHh
Confidence 999999999999999999999999999997 34445555555544
No 285
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=99.47 E-value=3e-14 Score=159.83 Aligned_cols=138 Identities=19% Similarity=0.269 Sum_probs=111.8
Q ss_pred eeeeeEEEeC--cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccc
Q 010501 39 IEDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (509)
Q Consensus 39 i~~~lsf~~g--~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i 108 (509)
..++++|.|+ ..++|+++||.+++|+ .++|+|+||||||||++.|++++ |..|.|.+||.... ++.+
T Consensus 453 ~~~nvsf~Y~~~~~~vL~~isl~i~~Ge---~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 529 (686)
T TIGR03797 453 EVDRVTFRYRPDGPLILDDVSLQIEPGE---FVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQL 529 (686)
T ss_pred EEEEEEEEcCCCCccceeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhcc
Confidence 3578899884 4679999999999999 99999999999999999999999 89999999997543 2468
Q ss_pred cccCCCCCCCchhhHHHHHHhhccC--c-------------ce-ecc-ccccCC----CCcCCCeeeeecCccEEEEecc
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKEG--K-------------AV-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~g--~-------------~i-~~P-~yD~~~----~~rsgg~~~~v~~a~VLIVEGi 167 (509)
++++|+|..|+ .++++|+.....- . .+ ..| .||-.. ...|+|++|++..+++++-++.
T Consensus 530 ~~v~Q~~~lf~-gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~ 608 (686)
T TIGR03797 530 GVVLQNGRLMS-GSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPR 608 (686)
T ss_pred EEEccCCccCc-ccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999998875 5888898654310 0 01 123 233322 3478999999999999999999
Q ss_pred eeeeccccCCCCe
Q 010501 168 YALSEKLRPLIDL 180 (509)
Q Consensus 168 ~aL~dElr~lLDl 180 (509)
+++.||+++.+|.
T Consensus 609 iLiLDEpTS~LD~ 621 (686)
T TIGR03797 609 ILLFDEATSALDN 621 (686)
T ss_pred EEEEeCCccCCCH
Confidence 9999999999997
No 286
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.47 E-value=7.9e-14 Score=136.96 Aligned_cols=179 Identities=15% Similarity=0.178 Sum_probs=134.6
Q ss_pred eeeEEEeCcE-EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC---CCeeEEEECCccCcc--------ccc
Q 010501 41 DTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDSS--------RII 108 (509)
Q Consensus 41 ~~lsf~~g~~-~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll---p~~g~I~~D~y~~~~--------r~i 108 (509)
.++..+.... .+|+++||.++.|+ +.+|.||||||||||+..|++.- ...|.|.+||.+... ..+
T Consensus 7 ~dLhv~v~~~keILkgvnL~v~~GE---vhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~Gi 83 (251)
T COG0396 7 KDLHVEVEGKKEILKGVNLTVKEGE---VHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGI 83 (251)
T ss_pred eeeEEEecCchhhhcCcceeEcCCc---EEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCC
Confidence 5677777774 99999999999999 99999999999999999999986 478999999986532 235
Q ss_pred cccCCCCCCCchhhHHHHHHhhcc----Ccc---------------eeccc--cccC-CCCcCCCeeeeecCccEEEEec
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKE----GKA---------------VQVPI--YDFK-SSSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~----g~~---------------i~~P~--yD~~-~~~rsgg~~~~v~~a~VLIVEG 166 (509)
...||.|..++-.++.+.|....+ ... +..+. .++. .-..|||+..+.+..+++++|+
T Consensus 84 fLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~leP 163 (251)
T COG0396 84 FLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEP 163 (251)
T ss_pred EEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCC
Confidence 568999988887777666653211 111 11111 1111 1246899999999999999999
Q ss_pred ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEE
Q 010501 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (509)
Q Consensus 167 i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII 237 (509)
.++++||+.+.+|+ ...+.+-+..+.++..|.+..-+.|+- + -..||.|+ +++|..
T Consensus 164 kl~ILDE~DSGLDI-------dalk~V~~~i~~lr~~~~~~liITHy~-r-----ll~~i~pD--~vhvl~ 219 (251)
T COG0396 164 KLAILDEPDSGLDI-------DALKIVAEGINALREEGRGVLIITHYQ-R-----LLDYIKPD--KVHVLY 219 (251)
T ss_pred CEEEecCCCcCccH-------HHHHHHHHHHHHHhcCCCeEEEEecHH-H-----HHhhcCCC--EEEEEE
Confidence 99999999999998 578888888888888887766555532 1 23567764 466665
No 287
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=99.47 E-value=2.5e-14 Score=161.05 Aligned_cols=138 Identities=17% Similarity=0.175 Sum_probs=111.9
Q ss_pred eeeeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccc
Q 010501 39 IEDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (509)
Q Consensus 39 i~~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i 108 (509)
-.++++|.|+. ..+|+++||.+++|+ .|+|+|+||||||||++.|++++ |..|.|.+||.+.. ++.+
T Consensus 479 ~~~~vsf~y~~~~~~vL~~isl~i~~Ge---~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 555 (710)
T TIGR03796 479 ELRNITFGYSPLEPPLIENFSLTLQPGQ---RVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSV 555 (710)
T ss_pred EEEEEEEecCCCCCCcccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhhe
Confidence 35788998863 579999999999999 99999999999999999999999 89999999997432 3568
Q ss_pred cccCCCCCCCchhhHHHHHHhhccCc----------------ce-ecc-ccccCC----CCcCCCeeeeecCccEEEEec
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKEGK----------------AV-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~g~----------------~i-~~P-~yD~~~----~~rsgg~~~~v~~a~VLIVEG 166 (509)
++++|+|..|+ .++++|+....... .+ ..| .||-.. ...|||++|++..+++++-++
T Consensus 556 ~~v~Q~~~lf~-gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p 634 (710)
T TIGR03796 556 AMVDQDIFLFE-GTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNP 634 (710)
T ss_pred eEEecCChhhh-ccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCC
Confidence 99999998775 68899987542110 01 123 233322 347899999999999999999
Q ss_pred ceeeeccccCCCCe
Q 010501 167 IYALSEKLRPLIDL 180 (509)
Q Consensus 167 i~aL~dElr~lLDl 180 (509)
..++.||+++.+|.
T Consensus 635 ~iliLDEptS~LD~ 648 (710)
T TIGR03796 635 SILILDEATSALDP 648 (710)
T ss_pred CEEEEECccccCCH
Confidence 99999999999997
No 288
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=99.47 E-value=5.2e-14 Score=139.39 Aligned_cols=146 Identities=12% Similarity=0.132 Sum_probs=111.0
Q ss_pred EeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCcc-------ccccccCCCCCCCchhhHH
Q 010501 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-------RIIDGNFDDPRLTDYDTLL 124 (509)
Q Consensus 52 iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~-------r~i~~~fq~p~~~d~~tl~ 124 (509)
+|+++||.+.+|+ +++|+|+||||||||+++|++++|..|.|.++|..... +.+++++|++..+...++.
T Consensus 11 ~l~~vsl~i~~Ge---i~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 87 (248)
T PRK03695 11 RLGPLSAEVRAGE---ILHLVGPNGAGKSTLLARMAGLLPGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVF 87 (248)
T ss_pred eecceEEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHH
Confidence 7999999999999 99999999999999999999998778999999874321 2468889988777777888
Q ss_pred HHHHhhcc-Ccc--------------eec-cccccCCCCcCCCeeeeecCccEEEE-------ecceeeeccccCCCCeE
Q 010501 125 ENIRGLKE-GKA--------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVII-------EGIYALSEKLRPLIDLR 181 (509)
Q Consensus 125 e~L~~L~~-g~~--------------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIV-------EGi~aL~dElr~lLDlk 181 (509)
+++..... +.. ... +..+...+..|+|+.+++..+++++. ++.+++.|||...+|.
T Consensus 88 ~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~- 166 (248)
T PRK03695 88 QYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDV- 166 (248)
T ss_pred HHHHhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCH-
Confidence 88765321 100 011 12234456788999999999999997 6699999999999998
Q ss_pred EEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 182 VSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 182 IfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
...+.+..+.+++.+.|.++
T Consensus 167 ------~~~~~l~~~L~~~~~~~~tv 186 (248)
T PRK03695 167 ------AQQAALDRLLSELCQQGIAV 186 (248)
T ss_pred ------HHHHHHHHHHHHHHhCCCEE
Confidence 34455566666665555553
No 289
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=99.46 E-value=5.1e-14 Score=152.41 Aligned_cols=159 Identities=11% Similarity=0.037 Sum_probs=117.6
Q ss_pred eeeeEEEe---CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-C-CeeEEEECCccCc--------cc
Q 010501 40 EDTLSFEK---GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNYNDS--------SR 106 (509)
Q Consensus 40 ~~~lsf~~---g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p-~~g~I~~D~y~~~--------~r 106 (509)
.+++++.+ +...+++++||.+.+|+ +++|+|+||||||||+++|++++ | ..|.|.+++.... ++
T Consensus 260 ~~~l~~~~~~~~~~~~l~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 260 ARNLTCWDVINPHRKRVDDVSFSLRRGE---ILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred EeCCcccccccccccccccceeEEeCCc---EEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 35566555 24579999999999999 99999999999999999999998 4 6899999986432 13
Q ss_pred cccccCCCC---CCCchhhHHHHHHhh-----cc--C-c-------------ceecc--ccccCCCCcCCCeeeeecCcc
Q 010501 107 IIDGNFDDP---RLTDYDTLLENIRGL-----KE--G-K-------------AVQVP--IYDFKSSSRIGYRTLEVPSSR 160 (509)
Q Consensus 107 ~i~~~fq~p---~~~d~~tl~e~L~~L-----~~--g-~-------------~i~~P--~yD~~~~~rsgg~~~~v~~a~ 160 (509)
.+++++|++ ..++..++.+++... .. . . ..... ..+...+..|+|+.+++..++
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~ 416 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAK 416 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHH
Confidence 478899986 366666777776431 00 0 0 01111 123444678999999999999
Q ss_pred EEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHH
Q 010501 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (509)
Q Consensus 161 VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e 208 (509)
+++.++.++++|||++.+|. ...+.+..+.+.+.+.|.++.
T Consensus 417 al~~~p~lllLDEPt~~LD~-------~~~~~l~~~l~~l~~~g~tvi 457 (500)
T TIGR02633 417 MLLTNPRVLILDEPTRGVDV-------GAKYEIYKLINQLAQEGVAII 457 (500)
T ss_pred HHhhCCCEEEEcCCCCCcCH-------hHHHHHHHHHHHHHhCCCEEE
Confidence 99999999999999999998 345556666666666665543
No 290
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.46 E-value=1e-13 Score=138.27 Aligned_cols=137 Identities=16% Similarity=0.181 Sum_probs=107.8
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCccC----------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYND---------- 103 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p-----~~g~I~~D~y~~---------- 103 (509)
.+++++.++...++++++|.+.+|+ +++|+|+||||||||+++|+++. | ..|.|.+++...
T Consensus 19 ~~~l~~~~~~~~vl~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~ 95 (265)
T PRK14252 19 VNKLNFYYGGYQALKNINMMVHEKQ---VTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPI 95 (265)
T ss_pred EEEEEEEECCeeeeeeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHH
Confidence 4678888877789999999999999 99999999999999999999987 3 589999986431
Q ss_pred -ccccccccCCCCCCCchhhHHHHHHhhcc--C--------c-------ceec-----cccccCCCCcCCCeeeeecCcc
Q 010501 104 -SSRIIDGNFDDPRLTDYDTLLENIRGLKE--G--------K-------AVQV-----PIYDFKSSSRIGYRTLEVPSSR 160 (509)
Q Consensus 104 -~~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g--------~-------~i~~-----P~yD~~~~~rsgg~~~~v~~a~ 160 (509)
..+.+++.+|++..++. ++.+++..... + . .... +..+......|+|+.+++..++
T Consensus 96 ~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 174 (265)
T PRK14252 96 EVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIAR 174 (265)
T ss_pred HHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHH
Confidence 12347889999888875 88888764211 0 0 0000 1123344567889999999999
Q ss_pred EEEEecceeeeccccCCCCe
Q 010501 161 IVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 161 VLIVEGi~aL~dElr~lLDl 180 (509)
+++.++.+++.|||...+|.
T Consensus 175 al~~~p~llllDEPt~gLD~ 194 (265)
T PRK14252 175 ALATDPEILLFDEPTSALDP 194 (265)
T ss_pred HHHcCCCEEEEeCCCccCCH
Confidence 99999999999999999997
No 291
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.46 E-value=4.5e-14 Score=142.80 Aligned_cols=137 Identities=16% Similarity=0.146 Sum_probs=107.4
Q ss_pred eeeeEEEe--CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCc-------cccccc
Q 010501 40 EDTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~--g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~-------~r~i~~ 110 (509)
.+++++.+ +...+|+++||.+++|+ ++||+|+||||||||+++|+++++..|.|.+|+.... ++.+++
T Consensus 5 ~~nls~~~~~~~~~~l~~isl~I~~Ge---~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (275)
T cd03289 5 VKDLTAKYTEGGNAVLENISFSISPGQ---RVGLLGRTGSGKSTLLSAFLRLLNTEGDIQIDGVSWNSVPLQKWRKAFGV 81 (275)
T ss_pred EEEEEEEeCCCCCcceeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEhhhCCHHHHhhhEEE
Confidence 46777777 45679999999999999 9999999999999999999999988899999997432 235789
Q ss_pred cCCCCCCCchhhHHHHHHhhccCc---------ceec-------c-ccccCC----CCcCCCeeeeecCccEEEEeccee
Q 010501 111 NFDDPRLTDYDTLLENIRGLKEGK---------AVQV-------P-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIYA 169 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~g~---------~i~~-------P-~yD~~~----~~rsgg~~~~v~~a~VLIVEGi~a 169 (509)
++|+|..++ .++.+++....... .+.. | .+++.. ...|+|+.+++..+++++.++.++
T Consensus 82 v~q~~~lf~-~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~il 160 (275)
T cd03289 82 IPQKVFIFS-GTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 160 (275)
T ss_pred ECCCcccch-hhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEE
Confidence 999998886 48888885332110 0111 1 111111 237888999999999999999999
Q ss_pred eeccccCCCCe
Q 010501 170 LSEKLRPLIDL 180 (509)
Q Consensus 170 L~dElr~lLDl 180 (509)
+.|||...+|.
T Consensus 161 llDEpts~LD~ 171 (275)
T cd03289 161 LLDEPSAHLDP 171 (275)
T ss_pred EEECccccCCH
Confidence 99999999998
No 292
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=99.46 E-value=3.6e-14 Score=138.65 Aligned_cols=146 Identities=19% Similarity=0.291 Sum_probs=106.2
Q ss_pred EeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-C----CeeEEEECCccCc-----cccccccCCCCC--CCc
Q 010501 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P----SIAVITMDNYNDS-----SRIIDGNFDDPR--LTD 119 (509)
Q Consensus 52 iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p----~~g~I~~D~y~~~-----~r~i~~~fq~p~--~~d 119 (509)
++++++|.+++|+ +++|+||||||||||+++|++++ | ..|.|.+++.... .+.+++++|++. ..+
T Consensus 1 ~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~ 77 (230)
T TIGR02770 1 LVQDLNLSLKRGE---VLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNP 77 (230)
T ss_pred CccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCc
Confidence 4789999999999 99999999999999999999998 5 7999999986432 235788999874 334
Q ss_pred hhhHHHHHHhhc--cCc--------------ceecc----ccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCC
Q 010501 120 YDTLLENIRGLK--EGK--------------AVQVP----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (509)
Q Consensus 120 ~~tl~e~L~~L~--~g~--------------~i~~P----~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLD 179 (509)
..++.+++.... .+. ....+ ..+......|+|+++++..+++++.++.+++.|||...+|
T Consensus 78 ~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD 157 (230)
T TIGR02770 78 LFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157 (230)
T ss_pred ccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccC
Confidence 456666553211 010 00111 2244456788999999999999999999999999999999
Q ss_pred eEEEeecCchHHHHHHHHHHHHH-cCCCH
Q 010501 180 LRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (509)
Q Consensus 180 lkIfVd~d~dirLiRRI~RD~~e-rG~t~ 207 (509)
. .....+.++.+++.+ .|.++
T Consensus 158 ~-------~~~~~l~~~l~~~~~~~~~ti 179 (230)
T TIGR02770 158 V-------VNQARVLKLLRELRQLFGTGI 179 (230)
T ss_pred H-------HHHHHHHHHHHHHHHhcCCEE
Confidence 7 344455555555544 35443
No 293
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.46 E-value=9.7e-14 Score=127.04 Aligned_cols=100 Identities=17% Similarity=0.231 Sum_probs=87.3
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~ 118 (509)
.+++++.++...++++++|.+++|+ +++|.|+||||||||+++|++++ |..|.|.+++. ..+++.++
T Consensus 3 ~~~l~~~~~~~~~l~~~~~~~~~Ge---~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----~~i~~~~~----- 70 (144)
T cd03221 3 LENLSKTYGGKLLLKDISLTINPGD---RIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----VKIGYFEQ----- 70 (144)
T ss_pred EEEEEEEECCceEEEeeEEEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe----EEEEEEcc-----
Confidence 3567777776689999999999999 99999999999999999999998 78999999873 23455554
Q ss_pred chhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 119 DYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 119 d~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
.|+|+.+++..+++++-++.+++.|||...+|.
T Consensus 71 -----------------------------lS~G~~~rv~laral~~~p~illlDEP~~~LD~ 103 (144)
T cd03221 71 -----------------------------LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDL 103 (144)
T ss_pred -----------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH
Confidence 677888999999999999999999999999997
No 294
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=1.4e-13 Score=137.58 Aligned_cols=136 Identities=17% Similarity=0.164 Sum_probs=106.4
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCccCc---------c
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDS---------S 105 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p-----~~g~I~~D~y~~~---------~ 105 (509)
+.+++.++...++++++|.+++|+ +++|+|+||||||||+++|++++ | ..|.|.+++.... .
T Consensus 12 ~~~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 88 (261)
T PRK14263 12 KLDKIFYGNFMAVRDSHVPIRKNE---ITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVR 88 (261)
T ss_pred EeEEEEeCCEEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhh
Confidence 445667778889999999999999 99999999999999999999998 3 5899999987432 1
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhcc--C---c---c-------eec-c----ccccCCCCcCCCeeeeecCccEEEEe
Q 010501 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--G---K---A-------VQV-P----IYDFKSSSRIGYRTLEVPSSRIVIIE 165 (509)
Q Consensus 106 r~i~~~fq~p~~~d~~tl~e~L~~L~~--g---~---~-------i~~-P----~yD~~~~~rsgg~~~~v~~a~VLIVE 165 (509)
+.+++++|++..+ ..++.+++..... + . . ... + ..+......|+|+.+++..+++++-+
T Consensus 89 ~~i~~v~q~~~~~-~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~ 167 (261)
T PRK14263 89 RYIGMVFQQPNPF-SMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATE 167 (261)
T ss_pred hceEEEecCCccc-cccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcC
Confidence 3478899998877 4788888864321 0 0 0 000 0 11223346788999999999999999
Q ss_pred cceeeeccccCCCCe
Q 010501 166 GIYALSEKLRPLIDL 180 (509)
Q Consensus 166 Gi~aL~dElr~lLDl 180 (509)
+.+++.|||...+|.
T Consensus 168 p~llllDEPtsgLD~ 182 (261)
T PRK14263 168 PEVLLLDEPCSALDP 182 (261)
T ss_pred CCEEEEeCCCccCCH
Confidence 999999999999997
No 295
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.45 E-value=1e-13 Score=138.29 Aligned_cols=138 Identities=17% Similarity=0.222 Sum_probs=107.9
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECC------ccCc-------c
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN------YNDS-------S 105 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~------y~~~-------~ 105 (509)
.+++++.++...+++++||.+.+|+ +++|+|+||||||||+++|++.. |..|.|.++| .... .
T Consensus 13 ~~~~~~~~~~~~~l~~vs~~i~~Ge---~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~ 89 (257)
T PRK14246 13 ISRLYLYINDKAILKDITIKIPNNS---IFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLR 89 (257)
T ss_pred eeeEEEecCCceeEeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHh
Confidence 3778888888899999999999999 99999999999999999999998 6776665554 2211 2
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhcc--C---c-c-----------eec-----cccccCCCCcCCCeeeeecCccEEE
Q 010501 106 RIIDGNFDDPRLTDYDTLLENIRGLKE--G---K-A-----------VQV-----PIYDFKSSSRIGYRTLEVPSSRIVI 163 (509)
Q Consensus 106 r~i~~~fq~p~~~d~~tl~e~L~~L~~--g---~-~-----------i~~-----P~yD~~~~~rsgg~~~~v~~a~VLI 163 (509)
..+++.+|++..++..++.+++..... + . . ... ...+...+..|+|+.+++..++.++
T Consensus 90 ~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~ 169 (257)
T PRK14246 90 KEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALA 169 (257)
T ss_pred cceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence 347889999988877888888864211 1 0 0 011 1123444567889999999999999
Q ss_pred EecceeeeccccCCCCe
Q 010501 164 IEGIYALSEKLRPLIDL 180 (509)
Q Consensus 164 VEGi~aL~dElr~lLDl 180 (509)
.++.+++.|||...+|.
T Consensus 170 ~~P~llllDEPt~~LD~ 186 (257)
T PRK14246 170 LKPKVLLMDEPTSMIDI 186 (257)
T ss_pred cCCCEEEEcCCCccCCH
Confidence 99999999999999997
No 296
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=99.45 E-value=1e-13 Score=137.86 Aligned_cols=137 Identities=14% Similarity=0.138 Sum_probs=103.5
Q ss_pred eeeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
.+++++.++. ..++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++.... .+.++
T Consensus 22 ~~~l~~~~~~~~~~il~~isl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~ 98 (257)
T cd03288 22 IHDLCVRYENNLKPVLKHVKAYIKPGQ---KVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLS 98 (257)
T ss_pred EEEEEEEeCCCCCcceeEEEEEEcCCC---EEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEE
Confidence 3456666554 568999999999999 99999999999999999999998 78999999986432 23578
Q ss_pred ccCCCCCCCchhhHHHHHHhhccCc-----------ce-----ecc-----ccccCCCCcCCCeeeeecCccEEEEecce
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEGK-----------AV-----QVP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g~-----------~i-----~~P-----~yD~~~~~rsgg~~~~v~~a~VLIVEGi~ 168 (509)
+++|++..++ .++.+++....... .+ ..| ..+......|+|+.+++..+++++-++.+
T Consensus 99 ~v~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 177 (257)
T cd03288 99 IILQDPILFS-GSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSI 177 (257)
T ss_pred EECCCCcccc-cHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 8999987765 36666654211000 00 001 11222346788899999999999999999
Q ss_pred eeeccccCCCCe
Q 010501 169 ALSEKLRPLIDL 180 (509)
Q Consensus 169 aL~dElr~lLDl 180 (509)
++.|||...+|.
T Consensus 178 lllDEPt~gLD~ 189 (257)
T cd03288 178 LIMDEATASIDM 189 (257)
T ss_pred EEEeCCccCCCH
Confidence 999999999997
No 297
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.45 E-value=4e-14 Score=152.36 Aligned_cols=165 Identities=20% Similarity=0.249 Sum_probs=126.6
Q ss_pred eeeeeeEEEeCcEE-EeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCc-------ccccc
Q 010501 38 PIEDTLSFEKGFFI-VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 38 ~i~~~lsf~~g~~~-iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~-------~r~i~ 109 (509)
-.-++++|.++... +|+++||++++|+ -|||+|+|||||||++++|.+++...|.|.+||.+.. ++.++
T Consensus 352 I~F~dV~f~y~~k~~iL~gvsf~I~kGe---kVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG~dik~~~~~SlR~~Ig 428 (591)
T KOG0057|consen 352 IEFDDVHFSYGPKRKVLKGVSFTIPKGE---KVAIVGSNGSGKSTILRLLLRFFDYSGSILIDGQDIKEVSLESLRQSIG 428 (591)
T ss_pred EEEEeeEEEeCCCCceecceeEEecCCC---EEEEECCCCCCHHHHHHHHHHHhccCCcEEECCeeHhhhChHHhhhhee
Confidence 34578999999877 9999999999999 9999999999999999999999989999999998543 24589
Q ss_pred ccCCCCCCCchhhHHHHHHhhccCc----------------c-eecc-ccccCCCC----cCCCeeeeecCccEEEEecc
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEGK----------------A-VQVP-IYDFKSSS----RIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g~----------------~-i~~P-~yD~~~~~----rsgg~~~~v~~a~VLIVEGi 167 (509)
+++|+..+|+ +++..|+..-...- . -..| .|+-..|+ .|||++|++..+++++=+..
T Consensus 429 ~VPQd~~LFn-dTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~ 507 (591)
T KOG0057|consen 429 VVPQDSVLFN-DTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAP 507 (591)
T ss_pred EeCCcccccc-hhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCC
Confidence 9999987765 68888887543210 0 1112 24443443 58999999999999999999
Q ss_pred eeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHH
Q 010501 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (509)
Q Consensus 168 ~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y 214 (509)
.++.||+++.+|.. .+.++++-+ ++ ..+|+|..-|.|+.
T Consensus 508 Il~~DEaTS~LD~~------TE~~i~~~i-~~-~~~~rTvI~IvH~l 546 (591)
T KOG0057|consen 508 ILLLDEATSALDSE------TEREILDMI-MD-VMSGRTVIMIVHRL 546 (591)
T ss_pred eEEecCcccccchh------hHHHHHHHH-HH-hcCCCeEEEEEecc
Confidence 99999999999973 233333333 33 55777766665554
No 298
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.45 E-value=4.6e-14 Score=155.61 Aligned_cols=137 Identities=16% Similarity=0.166 Sum_probs=110.9
Q ss_pred eeeeEEEeCc-EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccccc
Q 010501 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~-~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~ 110 (509)
.++++|.++. ..++++++|.+++|+ .++|+|+||||||||++.|++++ |..|.|.+||.... ++.+++
T Consensus 343 ~~~v~f~y~~~~~il~~i~l~i~~Ge---~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~ 419 (592)
T PRK10790 343 IDNVSFAYRDDNLVLQNINLSVPSRG---FVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAM 419 (592)
T ss_pred EEEEEEEeCCCCceeeceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEE
Confidence 4678887753 569999999999999 99999999999999999999999 88999999997432 256899
Q ss_pred cCCCCCCCchhhHHHHHHhhccCc---------------ce-ecc-ccccC----CCCcCCCeeeeecCccEEEEeccee
Q 010501 111 NFDDPRLTDYDTLLENIRGLKEGK---------------AV-QVP-IYDFK----SSSRIGYRTLEVPSSRIVIIEGIYA 169 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~g~---------------~i-~~P-~yD~~----~~~rsgg~~~~v~~a~VLIVEGi~a 169 (509)
++|+|..|+. ++++|+.....-. .+ ..| .||-. ....|||+.|++..+++++-++..+
T Consensus 420 v~Q~~~lF~~-Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~il 498 (592)
T PRK10790 420 VQQDPVVLAD-TFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQIL 498 (592)
T ss_pred EccCCccccc-hHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEE
Confidence 9999998874 8999987643110 01 123 23332 2347899999999999999999999
Q ss_pred eeccccCCCCe
Q 010501 170 LSEKLRPLIDL 180 (509)
Q Consensus 170 L~dElr~lLDl 180 (509)
+.|||.+.+|.
T Consensus 499 llDEpts~LD~ 509 (592)
T PRK10790 499 ILDEATANIDS 509 (592)
T ss_pred EEeCCcccCCH
Confidence 99999999997
No 299
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.45 E-value=4.9e-14 Score=153.30 Aligned_cols=137 Identities=21% Similarity=0.242 Sum_probs=110.8
Q ss_pred eeeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
.++++|.++. .++++++|+.+++|+ .++|+|+||||||||++.|++++ |..|.|.+||.... ++.++
T Consensus 323 ~~~v~f~y~~~~~~il~~i~l~i~~G~---~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~ 399 (529)
T TIGR02857 323 FSGLSVAYPGRRAPALRPVSFTVPPGE---RVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIA 399 (529)
T ss_pred EEEEEEECCCCCcccccceeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheE
Confidence 5678888864 469999999999999 99999999999999999999999 78999999997432 24589
Q ss_pred ccCCCCCCCchhhHHHHHHhhccC---cce--------------ecc-ccccC----CCCcCCCeeeeecCccEEEEecc
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEG---KAV--------------QVP-IYDFK----SSSRIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g---~~i--------------~~P-~yD~~----~~~rsgg~~~~v~~a~VLIVEGi 167 (509)
+++|+|..|+ .++++|+...... ..+ ..| .||-. ....|||+.+++..++.++-++.
T Consensus 400 ~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ 478 (529)
T TIGR02857 400 WVPQHPFLFA-GTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAP 478 (529)
T ss_pred EEcCCCcccC-cCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCC
Confidence 9999998886 6999998753321 000 112 13332 23578999999999999999999
Q ss_pred eeeeccccCCCCe
Q 010501 168 YALSEKLRPLIDL 180 (509)
Q Consensus 168 ~aL~dElr~lLDl 180 (509)
.++.||+++.+|.
T Consensus 479 ililDE~ts~lD~ 491 (529)
T TIGR02857 479 LLLLDEPTAHLDA 491 (529)
T ss_pred EEEEeCcccccCH
Confidence 9999999999997
No 300
>PLN03211 ABC transporter G-25; Provisional
Probab=99.44 E-value=5.3e-14 Score=157.82 Aligned_cols=163 Identities=13% Similarity=0.080 Sum_probs=125.8
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CC--eeEEEECCccCc---cccccccCCC
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS--IAVITMDNYNDS---SRIIDGNFDD 114 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~--~g~I~~D~y~~~---~r~i~~~fq~ 114 (509)
++++..++.+.+|+++|+.+++|+ +++|+||||||||||+++|++.+ |. .|.|.+||.... .+.+++++|+
T Consensus 72 ~~l~~~~~~~~iL~~vs~~i~~Ge---~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~ 148 (659)
T PLN03211 72 SDETRQIQERTILNGVTGMASPGE---ILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQD 148 (659)
T ss_pred ccccccCCCCeeeeCCEEEEECCE---EEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECcc
Confidence 345555667889999999999999 99999999999999999999998 43 899999997532 2457899999
Q ss_pred CCCCchhhHHHHHHhhcc---Ccc----------------eeccc-c-----ccCCCCcCCCeeeeecCccEEEEeccee
Q 010501 115 PRLTDYDTLLENIRGLKE---GKA----------------VQVPI-Y-----DFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (509)
Q Consensus 115 p~~~d~~tl~e~L~~L~~---g~~----------------i~~P~-y-----D~~~~~rsgg~~~~v~~a~VLIVEGi~a 169 (509)
+..++..++.|++..... ... ..... . +......|+|+++++..++.++.++.++
T Consensus 149 ~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iL 228 (659)
T PLN03211 149 DILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLL 228 (659)
T ss_pred cccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEE
Confidence 988888999999865211 000 00111 1 1223457999999999999999999999
Q ss_pred eeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHH
Q 010501 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (509)
Q Consensus 170 L~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~ 213 (509)
++|||...+|. .....+.++.+++.+.|+++.-+.|+
T Consensus 229 lLDEPtsgLD~-------~~~~~l~~~L~~l~~~g~TvI~~sH~ 265 (659)
T PLN03211 229 ILDEPTSGLDA-------TAAYRLVLTLGSLAQKGKTIVTSMHQ 265 (659)
T ss_pred EEeCCCCCcCH-------HHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 99999999998 35556677777777778776555554
No 301
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=1.4e-13 Score=150.23 Aligned_cols=134 Identities=11% Similarity=0.105 Sum_probs=108.0
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCC--
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR-- 116 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~-- 116 (509)
.+++++.++...+++++||.+.+|+ +++|+||||||||||+++|++.+ |..|.|.+++. ..+++++|++.
T Consensus 322 ~~~l~~~~~~~~~l~~is~~i~~Ge---~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----~~i~~~~q~~~~~ 394 (530)
T PRK15064 322 VENLTKGFDNGPLFKNLNLLLEAGE---RLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN----ANIGYYAQDHAYD 394 (530)
T ss_pred EEeeEEeeCCceeecCcEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc----eEEEEEccccccc
Confidence 5778888887889999999999999 99999999999999999999998 78999998763 45788888864
Q ss_pred CCchhhHHHHHHhhccCc-----------ceec--cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 117 LTDYDTLLENIRGLKEGK-----------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 117 ~~d~~tl~e~L~~L~~g~-----------~i~~--P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
.++..++.+++..+.... .+.. ...+......|+|+.+++..+++++.++.++++|||.+.+|.
T Consensus 395 ~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~ 471 (530)
T PRK15064 395 FENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDM 471 (530)
T ss_pred CCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 334567777765432100 0111 123555678899999999999999999999999999999998
No 302
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.44 E-value=5.2e-14 Score=155.17 Aligned_cols=137 Identities=15% Similarity=0.107 Sum_probs=110.7
Q ss_pred eeeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
.++++|.++. ..+|+++|+.+++|+ .++|+||||||||||++.|++.+ |..|.|.+||.... ++.++
T Consensus 341 ~~~v~f~y~~~~~~il~~i~~~i~~G~---~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 417 (574)
T PRK11160 341 LNNVSFTYPDQPQPVLKGLSLQIKAGE---KVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAIS 417 (574)
T ss_pred EEEEEEECCCCCCcceecceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhhee
Confidence 5788888753 569999999999999 99999999999999999999999 79999999997432 24578
Q ss_pred ccCCCCCCCchhhHHHHHHhhccCc----------------ceecc-ccccC----CCCcCCCeeeeecCccEEEEecce
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEGK----------------AVQVP-IYDFK----SSSRIGYRTLEVPSSRIVIIEGIY 168 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g~----------------~i~~P-~yD~~----~~~rsgg~~~~v~~a~VLIVEGi~ 168 (509)
+++|+|..|+ .++.+|+....... .+..| .||-. ....|+|+++++..++.++-++..
T Consensus 418 ~v~Q~~~lf~-~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqrqRialARall~~~~i 496 (574)
T PRK11160 418 VVSQRVHLFS-ATLRDNLLLAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPL 496 (574)
T ss_pred EEcccchhhc-ccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999998876 58999987543210 01112 13332 234788999999999999999999
Q ss_pred eeeccccCCCCe
Q 010501 169 ALSEKLRPLIDL 180 (509)
Q Consensus 169 aL~dElr~lLDl 180 (509)
++.||+++.+|.
T Consensus 497 lilDE~ts~lD~ 508 (574)
T PRK11160 497 LLLDEPTEGLDA 508 (574)
T ss_pred EEEeCCcccCCH
Confidence 999999999997
No 303
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.44 E-value=4.4e-14 Score=163.65 Aligned_cols=173 Identities=20% Similarity=0.259 Sum_probs=134.2
Q ss_pred eeeeEEEeCcE---EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccc
Q 010501 40 EDTLSFEKGFF---IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (509)
Q Consensus 40 ~~~lsf~~g~~---~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i 108 (509)
-+++.|.|..+ .+|+++||.+++|+ .|+|+|||||||||+...|.+++ |..|.|.+||.+.. +..+
T Consensus 353 f~nV~FsYPsRpdv~Il~g~sl~i~~G~---~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~i 429 (1228)
T KOG0055|consen 353 FRNVCFSYPSRPDVKILKGVSLKIPSGQ---TVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQI 429 (1228)
T ss_pred EEEEEecCCCCCcchhhCCeEEEeCCCC---EEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhc
Confidence 46788888755 58999999999999 99999999999999999999999 99999999998543 2468
Q ss_pred cccCCCCCCCchhhHHHHHHhhccCcc-----------------eecc-ccccCCC----CcCCCeeeeecCccEEEEec
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKEGKA-----------------VQVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~g~~-----------------i~~P-~yD~~~~----~rsgg~~~~v~~a~VLIVEG 166 (509)
+.++|+|.+| ..++.||+...+..-. ...| .||-..+ +.|||++|+++.++.|+-++
T Consensus 430 glV~QePvlF-~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQKQRIAIARalv~~P 508 (1228)
T KOG0055|consen 430 GLVSQEPVLF-ATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQKQRIAIARALVRNP 508 (1228)
T ss_pred Ceeeechhhh-cccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHHHHHHHHHHHHhCC
Confidence 9999999554 5789999987663310 1123 3444333 47899999999999999999
Q ss_pred ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEE
Q 010501 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (509)
Q Consensus 167 i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII 237 (509)
..+|+||++..||. .+.+.+...+ |....|+|..-|.|+.. +-+.||.|+
T Consensus 509 ~ILLLDEaTSaLD~-------~se~~Vq~AL-d~~~~grTTivVaHRLS-------------tIrnaD~I~ 558 (1228)
T KOG0055|consen 509 KILLLDEATSALDA-------ESERVVQEAL-DKASKGRTTIVVAHRLS-------------TIRNADKIA 558 (1228)
T ss_pred CEEEecCcccccCH-------HHHHHHHHHH-HHhhcCCeEEEEeeehh-------------hhhccCEEE
Confidence 99999999999997 4555555555 33346777666666653 235688776
No 304
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=99.44 E-value=5.7e-14 Score=158.15 Aligned_cols=137 Identities=18% Similarity=0.268 Sum_probs=111.7
Q ss_pred eeeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccccc
Q 010501 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~ 110 (509)
.++++|.|+ ...+|+++|+.+++|+ .++|+|+||||||||++.|++++ |..|.|.+||.... ++.+++
T Consensus 476 ~~~vsf~y~~~~~iL~~isl~i~~G~---~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~ 552 (708)
T TIGR01193 476 INDVSYSYGYGSNILSDISLTIKMNS---KTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY 552 (708)
T ss_pred EEEEEEEcCCCCcceeceeEEECCCC---EEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEE
Confidence 478899886 4679999999999999 99999999999999999999998 89999999997432 246899
Q ss_pred cCCCCCCCchhhHHHHHHhhc-cCc---c-------------e-ecc-ccccCC----CCcCCCeeeeecCccEEEEecc
Q 010501 111 NFDDPRLTDYDTLLENIRGLK-EGK---A-------------V-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~-~g~---~-------------i-~~P-~yD~~~----~~rsgg~~~~v~~a~VLIVEGi 167 (509)
++|+|..|+ .++++|+.... ..- . + ..| .||-.. ...|+|++|++..+++++-++.
T Consensus 553 v~Q~~~lf~-gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~ 631 (708)
T TIGR01193 553 LPQEPYIFS-GSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSK 631 (708)
T ss_pred EecCceehh-HHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCC
Confidence 999998876 58999987642 110 0 0 123 234322 3478999999999999999999
Q ss_pred eeeeccccCCCCe
Q 010501 168 YALSEKLRPLIDL 180 (509)
Q Consensus 168 ~aL~dElr~lLDl 180 (509)
+++.||+++.+|.
T Consensus 632 iliLDE~Ts~LD~ 644 (708)
T TIGR01193 632 VLILDESTSNLDT 644 (708)
T ss_pred EEEEeCccccCCH
Confidence 9999999999997
No 305
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.44 E-value=1.6e-13 Score=142.10 Aligned_cols=137 Identities=18% Similarity=0.191 Sum_probs=108.4
Q ss_pred eeeeEEEeC--cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC------CCeeEEEECCccCc-------
Q 010501 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM------PSIAVITMDNYNDS------- 104 (509)
Q Consensus 40 ~~~lsf~~g--~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll------p~~g~I~~D~y~~~------- 104 (509)
.+++++.+. ...+|++++|.+++|+ ++||+|+||||||||+++|+++. |..|.|.+||....
T Consensus 83 ~~nls~~y~~~~~~~L~~is~~I~~Ge---~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~ 159 (329)
T PRK14257 83 IRNFNFWYMNRTKHVLHDLNLDIKRNK---VTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSL 159 (329)
T ss_pred EEeeEEEecCCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 477887773 4579999999999999 99999999999999999999987 35899999998542
Q ss_pred --cccccccCCCCCCCchhhHHHHHHhhcc--C---cc------------eec-----cccccCCCCcCCCeeeeecCcc
Q 010501 105 --SRIIDGNFDDPRLTDYDTLLENIRGLKE--G---KA------------VQV-----PIYDFKSSSRIGYRTLEVPSSR 160 (509)
Q Consensus 105 --~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g---~~------------i~~-----P~yD~~~~~rsgg~~~~v~~a~ 160 (509)
++.+++++|+|..+. .++.+|+.+... + .. ... ...+......|+|+.+++..++
T Consensus 160 ~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LAR 238 (329)
T PRK14257 160 ELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIAR 238 (329)
T ss_pred hhhccEEEEecCCccCC-CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHH
Confidence 235789999998775 688888874211 0 00 000 0123334567899999999999
Q ss_pred EEEEecceeeeccccCCCCe
Q 010501 161 IVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 161 VLIVEGi~aL~dElr~lLDl 180 (509)
+++.++.+++.|||...+|.
T Consensus 239 Al~~~p~IlLLDEPts~LD~ 258 (329)
T PRK14257 239 AIALEPEVLLMDEPTSALDP 258 (329)
T ss_pred HHHhCCCEEEEeCCcccCCH
Confidence 99999999999999999997
No 306
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=99.43 E-value=6.3e-14 Score=154.02 Aligned_cols=137 Identities=15% Similarity=0.160 Sum_probs=110.5
Q ss_pred eeeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
.++++|.+.. ..+|+++++.+++|+ .++|+|+||||||||++.|++++ |..|.|.+||.... ++.++
T Consensus 344 ~~~vsf~y~~~~~~il~~i~l~i~~G~---~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~ 420 (582)
T PRK11176 344 FRNVTFTYPGKEVPALRNINFKIPAGK---TVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVA 420 (582)
T ss_pred EEEEEEecCCCCCccccCceEEeCCCC---EEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhce
Confidence 4678888753 679999999999999 99999999999999999999999 78999999997432 24689
Q ss_pred ccCCCCCCCchhhHHHHHHhhccCc----c-------------e-ecc-ccccCC----CCcCCCeeeeecCccEEEEec
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEGK----A-------------V-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g~----~-------------i-~~P-~yD~~~----~~rsgg~~~~v~~a~VLIVEG 166 (509)
+++|++..|+ .++++|+....... . + ..| .+|-.. ...|||+++++..+|+++-++
T Consensus 421 ~v~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~ 499 (582)
T PRK11176 421 LVSQNVHLFN-DTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDS 499 (582)
T ss_pred EEccCceeec-chHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence 9999998876 68999987643110 0 0 112 123222 347899999999999999999
Q ss_pred ceeeeccccCCCCe
Q 010501 167 IYALSEKLRPLIDL 180 (509)
Q Consensus 167 i~aL~dElr~lLDl 180 (509)
..++.|||++.+|.
T Consensus 500 ~ililDEptsaLD~ 513 (582)
T PRK11176 500 PILILDEATSALDT 513 (582)
T ss_pred CEEEEECccccCCH
Confidence 99999999999997
No 307
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=99.43 E-value=1.4e-13 Score=149.26 Aligned_cols=150 Identities=13% Similarity=0.098 Sum_probs=115.4
Q ss_pred EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------cccccccCCCCC---CC
Q 010501 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDDPR---LT 118 (509)
Q Consensus 51 ~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~~~fq~p~---~~ 118 (509)
.+++++||.+.+|+ +++|+||||||||||+++|++.+ |..|.|.+++.... ...+++++|++. .+
T Consensus 267 ~~l~~isl~i~~Ge---~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 343 (501)
T PRK11288 267 GLREPISFSVRAGE---IVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGII 343 (501)
T ss_pred CcccceeEEEeCCc---EEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCc
Confidence 58999999999999 99999999999999999999998 68999999886432 134788899864 67
Q ss_pred chhhHHHHHHhhcc------C---------c-------ceec--cccccCCCCcCCCeeeeecCccEEEEecceeeeccc
Q 010501 119 DYDTLLENIRGLKE------G---------K-------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (509)
Q Consensus 119 d~~tl~e~L~~L~~------g---------~-------~i~~--P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dEl 174 (509)
+..++.+++..... + . .... ...+...+..|+|+++++..+++++.++.+++.|||
T Consensus 344 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEP 423 (501)
T PRK11288 344 PVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEP 423 (501)
T ss_pred CCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCC
Confidence 77788888653110 0 0 0111 123444567899999999999999999999999999
Q ss_pred cCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHH
Q 010501 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (509)
Q Consensus 175 r~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~V 210 (509)
+..+|. ...+.+.++.+++.+.|.++.-+
T Consensus 424 t~~LD~-------~~~~~l~~~l~~l~~~g~tviiv 452 (501)
T PRK11288 424 TRGIDV-------GAKHEIYNVIYELAAQGVAVLFV 452 (501)
T ss_pred CCCCCH-------hHHHHHHHHHHHHHhCCCEEEEE
Confidence 999998 35566666777777667664333
No 308
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.43 E-value=8.3e-14 Score=148.59 Aligned_cols=167 Identities=16% Similarity=0.104 Sum_probs=134.0
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------cccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~~ 110 (509)
..+++..++...+.++|||.+.+|+ |.+|+|.||+|||||+++|.+.+ |+.|.|.+||.... +..+++
T Consensus 7 ~~~itK~f~~~~And~V~l~v~~Ge---IHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGM 83 (501)
T COG3845 7 MRGITKRFPGVVANDDVSLSVKKGE---IHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGM 83 (501)
T ss_pred EeccEEEcCCEEecCceeeeecCCc---EEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcE
Confidence 3566777788999999999999999 99999999999999999999999 99999999998432 135899
Q ss_pred cCCCCCCCchhhHHHHHHhhccCcc---ee-----------ccccc------cCCCCcCCCeeeeecCccEEEEecceee
Q 010501 111 NFDDPRLTDYDTLLENIRGLKEGKA---VQ-----------VPIYD------FKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~g~~---i~-----------~P~yD------~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
++||+.+++..++.||+..-.+... +. ...|. ...++.+-|++|++++-++|.-...+++
T Consensus 84 VhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLI 163 (501)
T COG3845 84 VHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLI 163 (501)
T ss_pred EeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEE
Confidence 9999999999999999876443210 00 01222 2234566778999999999999999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISE 216 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~ 216 (509)
+|||+..|.+ .+....-.+.|.+++.|.++.-+.|...+
T Consensus 164 LDEPTaVLTP-------~E~~~lf~~l~~l~~~G~tIi~ITHKL~E 202 (501)
T COG3845 164 LDEPTAVLTP-------QEADELFEILRRLAAEGKTIIFITHKLKE 202 (501)
T ss_pred EcCCcccCCH-------HHHHHHHHHHHHHHHCCCEEEEEeccHHH
Confidence 9999887765 67777777888999999997766666543
No 309
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.43 E-value=1.4e-13 Score=168.34 Aligned_cols=157 Identities=13% Similarity=0.000 Sum_probs=125.7
Q ss_pred eeeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc------cccccc
Q 010501 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~------~r~i~~ 110 (509)
.+++++.++. +.++++++|.+++|+ ++||+|+||||||||+++|++.+ |+.|.|.++|+... .+.+++
T Consensus 1940 v~nLsK~Y~~~~~~aL~~ISf~I~~GE---i~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~IGy 2016 (2272)
T TIGR01257 1940 LNELTKVYSGTSSPAVDRLCVGVRPGE---CFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNMGY 2016 (2272)
T ss_pred EEEEEEEECCCCceEEEeeEEEEcCCc---EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhEEE
Confidence 4677877774 679999999999999 99999999999999999999998 89999999997542 235789
Q ss_pred cCCCCCCCchhhHHHHHHhhcc--Cc---c-----------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeecc
Q 010501 111 NFDDPRLTDYDTLLENIRGLKE--GK---A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~--g~---~-----------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dE 173 (509)
.+|++..++..+++|++..... +. . ... ...+...+..|+|+++++..+.+++.++.++++||
T Consensus 2017 ~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDE 2096 (2272)
T TIGR01257 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDE 2096 (2272)
T ss_pred EeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 9999999999999999875321 10 0 011 12345567889999999999999999999999999
Q ss_pred ccCCCCeEEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 174 lr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
|...+|. ...+.+.++++.+.+.|.+
T Consensus 2097 PTsGLDp-------~sr~~l~~lL~~l~~~g~T 2122 (2272)
T TIGR01257 2097 PTTGMDP-------QARRMLWNTIVSIIREGRA 2122 (2272)
T ss_pred CCCCCCH-------HHHHHHHHHHHHHHhCCCE
Confidence 9999998 4555666666665555554
No 310
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=99.43 E-value=7.9e-14 Score=156.68 Aligned_cols=137 Identities=22% Similarity=0.211 Sum_probs=111.3
Q ss_pred eeeeEEEeC--cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g--~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
.++++|.|+ ..++|+++++.+++|+ .++|+|+||||||||++.|++++ |..|.|.+||.+.. ++.++
T Consensus 466 ~~~vsf~Y~~~~~~vL~~i~l~i~~G~---~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~ 542 (694)
T TIGR03375 466 FRNVSFAYPGQETPALDNVSLTIRPGE---KVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIG 542 (694)
T ss_pred EEEEEEEeCCCCccceeeeeEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccE
Confidence 578899885 3569999999999999 99999999999999999999999 88999999997432 24689
Q ss_pred ccCCCCCCCchhhHHHHHHhhccCc---c-------------e-ecc-ccccCC----CCcCCCeeeeecCccEEEEecc
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEGK---A-------------V-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g~---~-------------i-~~P-~yD~~~----~~rsgg~~~~v~~a~VLIVEGi 167 (509)
+++|+|..|+ .++++|+....... . + ..| .||-.. ...|+|++|++..+++++-++.
T Consensus 543 ~v~Q~~~lf~-~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~ 621 (694)
T TIGR03375 543 YVPQDPRLFY-GTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPP 621 (694)
T ss_pred EECCChhhhh-hhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999998776 58999987543210 0 0 123 233222 3578999999999999999999
Q ss_pred eeeeccccCCCCe
Q 010501 168 YALSEKLRPLIDL 180 (509)
Q Consensus 168 ~aL~dElr~lLDl 180 (509)
+++.||+++.+|.
T Consensus 622 iliLDE~Ts~LD~ 634 (694)
T TIGR03375 622 ILLLDEPTSAMDN 634 (694)
T ss_pred EEEEeCCCCCCCH
Confidence 9999999999997
No 311
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.43 E-value=2.1e-13 Score=149.19 Aligned_cols=137 Identities=18% Similarity=0.254 Sum_probs=109.6
Q ss_pred eeeeEEEeC--cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g--~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
.++++|.++ ...+++++|+.+++|+ .++|+|+||||||||++.|++.+ |..|.|.+||.... ++.++
T Consensus 319 ~~~v~~~y~~~~~~~l~~~~~~i~~G~---~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~ 395 (544)
T TIGR01842 319 VENVTIVPPGGKKPTLRGISFRLQAGE---ALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIG 395 (544)
T ss_pred EEEEEEEcCCCCccccccceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheE
Confidence 467888874 3579999999999999 99999999999999999999998 78999999987432 24578
Q ss_pred ccCCCCCCCchhhHHHHHHhhccC---cc-------------e-ecc-ccccC----CCCcCCCeeeeecCccEEEEecc
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEG---KA-------------V-QVP-IYDFK----SSSRIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g---~~-------------i-~~P-~yD~~----~~~rsgg~~~~v~~a~VLIVEGi 167 (509)
+++|+|..++ .++++|+...... .. + ..| .+|.. ....|+|+.+++..+++++-++.
T Consensus 396 ~v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ 474 (544)
T TIGR01842 396 YLPQDVELFP-GTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPK 474 (544)
T ss_pred EecCCccccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999998876 4889998743211 00 0 112 12322 23578999999999999999999
Q ss_pred eeeeccccCCCCe
Q 010501 168 YALSEKLRPLIDL 180 (509)
Q Consensus 168 ~aL~dElr~lLDl 180 (509)
+++.||+++.+|.
T Consensus 475 ililDEpts~LD~ 487 (544)
T TIGR01842 475 LVVLDEPNSNLDE 487 (544)
T ss_pred EEEEeCCccccCH
Confidence 9999999999997
No 312
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=99.43 E-value=7.6e-14 Score=157.62 Aligned_cols=137 Identities=19% Similarity=0.247 Sum_probs=111.2
Q ss_pred eeeeEEEeCc---EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccc
Q 010501 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (509)
Q Consensus 40 ~~~lsf~~g~---~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i 108 (509)
.++++|.|+. .++|+++||.+++|+ .++|+||||||||||++.|.+++ |..|.|.+||.... ++.+
T Consensus 481 ~~nVsf~Y~~~~~~~vL~~isl~i~~Ge---~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i 557 (711)
T TIGR00958 481 FQDVSFSYPNRPDVPVLKGLTFTLHPGE---VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQV 557 (711)
T ss_pred EEEEEEECCCCCCCccccCceEEEcCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhc
Confidence 5788898753 579999999999999 99999999999999999999999 78999999997432 2468
Q ss_pred cccCCCCCCCchhhHHHHHHhhccCc---c-------------e-ecc-ccccCC----CCcCCCeeeeecCccEEEEec
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKEGK---A-------------V-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~g~---~-------------i-~~P-~yD~~~----~~rsgg~~~~v~~a~VLIVEG 166 (509)
++++|+|..|+ .++++|+....... . + ..| .||-.. ...|+|++|++..+|+++-++
T Consensus 558 ~~v~Q~~~lF~-gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p 636 (711)
T TIGR00958 558 ALVGQEPVLFS-GSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKP 636 (711)
T ss_pred eEEecCccccc-cCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999998775 68899987543210 0 0 112 244332 247899999999999999999
Q ss_pred ceeeeccccCCCCe
Q 010501 167 IYALSEKLRPLIDL 180 (509)
Q Consensus 167 i~aL~dElr~lLDl 180 (509)
..++.||+++.+|.
T Consensus 637 ~ILILDEpTSaLD~ 650 (711)
T TIGR00958 637 RVLILDEATSALDA 650 (711)
T ss_pred CEEEEEccccccCH
Confidence 99999999999997
No 313
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.42 E-value=9.1e-14 Score=167.48 Aligned_cols=165 Identities=18% Similarity=0.248 Sum_probs=130.1
Q ss_pred eeeeEEEeC---cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-C------------------------
Q 010501 40 EDTLSFEKG---FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P------------------------ 91 (509)
Q Consensus 40 ~~~lsf~~g---~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p------------------------ 91 (509)
.++++|.|. ..++|+++||.+++|+ .++|+|+|||||||+++.|.+++ |
T Consensus 1168 f~nVsF~Y~~~~~~~vL~~lsl~i~~G~---~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1168 IMDVNFRYISRPNVPIYKDLTFSCDSKK---TTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred EEEEEEECCCCCCCccccCeeEEEcCCC---EEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 478999885 3479999999999999 99999999999999999999998 5
Q ss_pred ------------------------------CeeEEEECCccCc-------cccccccCCCCCCCchhhHHHHHHhhccCc
Q 010501 92 ------------------------------SIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRGLKEGK 134 (509)
Q Consensus 92 ------------------------------~~g~I~~D~y~~~-------~r~i~~~fq~p~~~d~~tl~e~L~~L~~g~ 134 (509)
..|.|.+||.... ++.+++++|+|.+|+ .++++||...+..-
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIreNI~~g~~~a 1323 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIYENIKFGKEDA 1323 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHHHHHhcCCCCC
Confidence 4899999998532 246899999998874 79999997754310
Q ss_pred ---c--------------eecc-ccccCCC----CcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHH
Q 010501 135 ---A--------------VQVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL 192 (509)
Q Consensus 135 ---~--------------i~~P-~yD~~~~----~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirL 192 (509)
. ...| .||-..+ ..|||++|+++.+|+|+-++.++++||+++.||. ...+.
T Consensus 1324 t~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~-------~sE~~ 1396 (1466)
T PTZ00265 1324 TREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDS-------NSEKL 1396 (1466)
T ss_pred CHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH-------HHHHH
Confidence 0 1123 3454433 4789999999999999999999999999999997 34556
Q ss_pred HHHHHHHHH-HcCCCHHHHHHHHH
Q 010501 193 VKRVFRDIQ-RVGQEPEEIIHQIS 215 (509)
Q Consensus 193 iRRI~RD~~-erG~t~e~Vi~~y~ 215 (509)
+....+++. .+|+|..-|.|+..
T Consensus 1397 I~~~L~~~~~~~~~TvIiIaHRls 1420 (1466)
T PTZ00265 1397 IEKTIVDIKDKADKTIITIAHRIA 1420 (1466)
T ss_pred HHHHHHHHhccCCCEEEEEechHH
Confidence 666666654 35788777777663
No 314
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=99.42 E-value=1.7e-13 Score=150.47 Aligned_cols=134 Identities=19% Similarity=0.184 Sum_probs=107.9
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCC-C
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR-L 117 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~-~ 117 (509)
.+++++.++...+++++||.+.+|+ +++|+||||||||||+++|++.+ |..|.|.+++ ...+++++|++. .
T Consensus 325 ~~~l~~~~~~~~~l~~isl~i~~Ge---~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~----~~~i~~v~q~~~~~ 397 (552)
T TIGR03719 325 AENLSKGFGDKLLIDDLSFKLPPGG---IVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE----TVKLAYVDQSRDAL 397 (552)
T ss_pred EeeEEEEECCeeeeccceEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC----ceEEEEEeCCcccc
Confidence 4778888888889999999999999 99999999999999999999998 7899998853 125788888863 5
Q ss_pred CchhhHHHHHHhhcc--C----c--------ceecc--ccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 118 TDYDTLLENIRGLKE--G----K--------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 118 ~d~~tl~e~L~~L~~--g----~--------~i~~P--~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
++..++.+++..... + . .+... ..+...+..|+|+.+++..+++++.++.+++.|||.+.+|.
T Consensus 398 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~ 476 (552)
T TIGR03719 398 DPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDV 476 (552)
T ss_pred CCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Confidence 666788888765321 0 0 01111 12444567899999999999999999999999999999998
No 315
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.42 E-value=2.3e-13 Score=147.57 Aligned_cols=152 Identities=14% Similarity=0.123 Sum_probs=115.8
Q ss_pred EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------cccccccCCCC---CCC
Q 010501 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDDP---RLT 118 (509)
Q Consensus 51 ~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~~~fq~p---~~~ 118 (509)
.+++++||.+.+|+ +++|+||||||||||+++|++++ |..|.|.++|.... ++.+++++|++ ..+
T Consensus 266 ~~l~~vsl~i~~Ge---~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~ 342 (501)
T PRK10762 266 PGVNDVSFTLRKGE---ILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLV 342 (501)
T ss_pred CCcccceEEEcCCc---EEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCc
Confidence 46999999999999 99999999999999999999998 78999999986431 13478999986 356
Q ss_pred chhhHHHHHHhhc-----c--C-----c----------ceec--cccccCCCCcCCCeeeeecCccEEEEecceeeeccc
Q 010501 119 DYDTLLENIRGLK-----E--G-----K----------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (509)
Q Consensus 119 d~~tl~e~L~~L~-----~--g-----~----------~i~~--P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dEl 174 (509)
+..++.+++.... . + . .... +..+...+..|+|+.+++..+++++.++.+++.|||
T Consensus 343 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEP 422 (501)
T PRK10762 343 LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEP 422 (501)
T ss_pred CCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCC
Confidence 6677888775310 0 0 0 0111 123445567899999999999999999999999999
Q ss_pred cCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 175 r~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
+..+|. .....+.++.+++...|.++.-+.|
T Consensus 423 t~~LD~-------~~~~~l~~~l~~~~~~g~tviivtH 453 (501)
T PRK10762 423 TRGVDV-------GAKKEIYQLINQFKAEGLSIILVSS 453 (501)
T ss_pred CCCCCH-------hHHHHHHHHHHHHHHCCCEEEEEcC
Confidence 999998 3556666777777666666433333
No 316
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.42 E-value=1.1e-13 Score=152.62 Aligned_cols=137 Identities=20% Similarity=0.281 Sum_probs=111.0
Q ss_pred eeeeEEEeCc-EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccccc
Q 010501 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~-~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~ 110 (509)
.++++|.++. ..+++++++.+++|+ .++|+|+||||||||++.|++++ |..|.|.+||.... ++.+++
T Consensus 337 ~~~vsf~y~~~~~iL~~inl~i~~G~---~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 413 (588)
T PRK13657 337 FDDVSFSYDNSRQGVEDVSFEAKPGQ---TVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAV 413 (588)
T ss_pred EEEEEEEeCCCCceecceeEEECCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 5678888854 569999999999999 99999999999999999999998 78999999997432 246899
Q ss_pred cCCCCCCCchhhHHHHHHhhccCc---c-------------e-ecc-ccccCC----CCcCCCeeeeecCccEEEEecce
Q 010501 111 NFDDPRLTDYDTLLENIRGLKEGK---A-------------V-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIY 168 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~g~---~-------------i-~~P-~yD~~~----~~rsgg~~~~v~~a~VLIVEGi~ 168 (509)
++|+|..|+ .++++|+...+... . + ..| .+|... ...|||+.|++..+++++-++..
T Consensus 414 v~Q~~~lf~-~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~i 492 (588)
T PRK13657 414 VFQDAGLFN-RSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPI 492 (588)
T ss_pred EecCccccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 999998875 68999987653210 0 0 012 233322 24789999999999999999999
Q ss_pred eeeccccCCCCe
Q 010501 169 ALSEKLRPLIDL 180 (509)
Q Consensus 169 aL~dElr~lLDl 180 (509)
++.|||++.+|.
T Consensus 493 liLDEpts~LD~ 504 (588)
T PRK13657 493 LILDEATSALDV 504 (588)
T ss_pred EEEeCCccCCCH
Confidence 999999999997
No 317
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.42 E-value=1.1e-13 Score=152.38 Aligned_cols=163 Identities=15% Similarity=0.195 Sum_probs=121.4
Q ss_pred eeeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
.++++|.++. ..+++++|+.+++|+ .++|+||||||||||++.|++++ |..|.|.+|+.... ++.++
T Consensus 316 ~~~v~~~y~~~~~~~l~~i~~~i~~G~---~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 392 (569)
T PRK10789 316 VNIRQFTYPQTDHPALENVNFTLKPGQ---MLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLA 392 (569)
T ss_pred EEEEEEECCCCCCccccCeeEEECCCC---EEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheE
Confidence 4667777653 579999999999999 99999999999999999999998 78999999987432 24578
Q ss_pred ccCCCCCCCchhhHHHHHHhhccCc---c--------------eecc-ccccC----CCCcCCCeeeeecCccEEEEecc
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEGK---A--------------VQVP-IYDFK----SSSRIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g~---~--------------i~~P-~yD~~----~~~rsgg~~~~v~~a~VLIVEGi 167 (509)
+++|+|..++ .++++|+....... . ...| .+|.. ....|+|+++++..+++++-++.
T Consensus 393 ~v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~ 471 (569)
T PRK10789 393 VVSQTPFLFS-DTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAE 471 (569)
T ss_pred EEccCCeecc-ccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999998876 58999986542210 0 0112 12221 23578899999999999999999
Q ss_pred eeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHH
Q 010501 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (509)
Q Consensus 168 ~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y 214 (509)
+++.||+.+.+|. ...+.+....++.. .|++..-+.|+.
T Consensus 472 illlDEpts~LD~-------~~~~~i~~~l~~~~-~~~tii~itH~~ 510 (569)
T PRK10789 472 ILILDDALSAVDG-------RTEHQILHNLRQWG-EGRTVIISAHRL 510 (569)
T ss_pred EEEEECccccCCH-------HHHHHHHHHHHHHh-CCCEEEEEecch
Confidence 9999999999997 23344444444443 466655555543
No 318
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=99.42 E-value=2.2e-13 Score=149.78 Aligned_cols=134 Identities=18% Similarity=0.184 Sum_probs=108.1
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCC-CC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDP-RL 117 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p-~~ 117 (509)
.+++++.++...+++++||.+.+|+ ++||+|+||||||||+++|++.+ |..|.|.+++ ...+++++|++ ..
T Consensus 327 ~~~l~~~~~~~~~l~~isl~i~~Ge---~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~----~~~i~~v~q~~~~~ 399 (556)
T PRK11819 327 AENLSKSFGDRLLIDDLSFSLPPGG---IVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE----TVKLAYVDQSRDAL 399 (556)
T ss_pred EEeEEEEECCeeeecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC----ceEEEEEeCchhhc
Confidence 4678888888889999999999999 99999999999999999999998 7899998853 12478888886 55
Q ss_pred CchhhHHHHHHhhcc--C---c---------ceecc--ccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 118 TDYDTLLENIRGLKE--G---K---------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 118 ~d~~tl~e~L~~L~~--g---~---------~i~~P--~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
++..++.+++..... + . ....+ ..+...+..|+|+.+++..+++++.++.++++|||.+.+|.
T Consensus 400 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~ 478 (556)
T PRK11819 400 DPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDV 478 (556)
T ss_pred CCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 666788888764211 0 0 01111 13445578899999999999999999999999999999997
No 319
>PRK13409 putative ATPase RIL; Provisional
Probab=99.41 E-value=2.6e-13 Score=150.60 Aligned_cols=157 Identities=16% Similarity=0.169 Sum_probs=121.1
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~ 118 (509)
.+++++.++.. .|+++++.+.+|+ +++|+||||||||||+++|++++ |..|.|.++ ..+++.+|++...
T Consensus 343 ~~~ls~~~~~~-~l~~~s~~i~~Ge---iv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~------~~i~y~~Q~~~~~ 412 (590)
T PRK13409 343 YPDLTKKLGDF-SLEVEGGEIYEGE---VIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE------LKISYKPQYIKPD 412 (590)
T ss_pred EcceEEEECCE-EEEecceEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe------eeEEEecccccCC
Confidence 35677777665 4899999999999 99999999999999999999998 788999876 2478888888777
Q ss_pred chhhHHHHHHhhccCc-----------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeec
Q 010501 119 DYDTLLENIRGLKEGK-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (509)
Q Consensus 119 d~~tl~e~L~~L~~g~-----------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~ 186 (509)
...++.+++....... .... ...+...+..|+|+.+++..+++++.++.++++|||.+.+|.
T Consensus 413 ~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~------ 486 (590)
T PRK13409 413 YDGTVEDLLRSITDDLGSSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDV------ 486 (590)
T ss_pred CCCcHHHHHHHHhhhcChHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCH------
Confidence 7778888876532110 0011 234566678999999999999999999999999999999998
Q ss_pred CchHHHHHHHHHHHHH-cCCCHHHHHHH
Q 010501 187 GVHFDLVKRVFRDIQR-VGQEPEEIIHQ 213 (509)
Q Consensus 187 d~dirLiRRI~RD~~e-rG~t~e~Vi~~ 213 (509)
.....+.++++++.. .|.++.-+.|.
T Consensus 487 -~~~~~l~~~l~~l~~~~g~tviivsHD 513 (590)
T PRK13409 487 -EQRLAVAKAIRRIAEEREATALVVDHD 513 (590)
T ss_pred -HHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 455666677777654 46665444443
No 320
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.41 E-value=3.6e-13 Score=123.90 Aligned_cols=121 Identities=19% Similarity=0.302 Sum_probs=93.5
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc-------ccccccC
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNF 112 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~-------r~i~~~f 112 (509)
++++|.+....+++++++.+.+|+ +++|+|+||||||||+++|++.+ +..|.|.+++..... +.+++.+
T Consensus 3 ~~~~~~~~~~~~l~~~~~~i~~g~---~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~ 79 (157)
T cd00267 3 ENLSFRYGGRTALDNVSLTLKAGE---IVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVP 79 (157)
T ss_pred EEEEEEeCCeeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEe
Confidence 456777766789999999999999 99999999999999999999998 688999998753221 1122222
Q ss_pred CCCCCCchhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHH
Q 010501 113 DDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL 192 (509)
Q Consensus 113 q~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirL 192 (509)
| .|+|+.+++..++++..++.+++.|||...+|. .....
T Consensus 80 q----------------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~-------~~~~~ 118 (157)
T cd00267 80 Q----------------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSGLDP-------ASRER 118 (157)
T ss_pred e----------------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCH-------HHHHH
Confidence 2 678889999999999999999999999999997 23444
Q ss_pred HHHHHHHHHHcCC
Q 010501 193 VKRVFRDIQRVGQ 205 (509)
Q Consensus 193 iRRI~RD~~erG~ 205 (509)
+.++.++....|.
T Consensus 119 l~~~l~~~~~~~~ 131 (157)
T cd00267 119 LLELLRELAEEGR 131 (157)
T ss_pred HHHHHHHHHHCCC
Confidence 4444444443333
No 321
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=99.41 E-value=1.4e-13 Score=149.54 Aligned_cols=176 Identities=18% Similarity=0.276 Sum_probs=129.7
Q ss_pred EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC-----CeeEEEECCccCc-----------cccccccCC
Q 010501 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-----SIAVITMDNYNDS-----------SRIIDGNFD 113 (509)
Q Consensus 50 ~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp-----~~g~I~~D~y~~~-----------~r~i~~~fq 113 (509)
..++++|||.+.+|+ ++||+|.|||||||++++|.+++| ..|.|.+++.+.. .+.++++||
T Consensus 22 ~~~v~~vsf~v~~GE---~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q 98 (539)
T COG1123 22 VPAVRDVSFEVEPGE---ILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQ 98 (539)
T ss_pred eeeeecceEEecCCc---EEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEec
Confidence 469999999999999 999999999999999999999994 2699999986321 145789999
Q ss_pred CCCC-C-chhhHHHHHHhhcc-C----------------cceecc--cc-ccCCCCcCCCeeeeecCccEEEEecceeee
Q 010501 114 DPRL-T-DYDTLLENIRGLKE-G----------------KAVQVP--IY-DFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (509)
Q Consensus 114 ~p~~-~-d~~tl~e~L~~L~~-g----------------~~i~~P--~y-D~~~~~rsgg~~~~v~~a~VLIVEGi~aL~ 171 (509)
+|.. + +..++.+++..... . +.+..| .- +..+|+.|||+.|++-.+..|..++.+++.
T Consensus 99 ~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIa 178 (539)
T COG1123 99 DPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIA 178 (539)
T ss_pred CchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEE
Confidence 9743 3 33666666654211 1 112222 21 456889999999999999999999999999
Q ss_pred ccccCCCCeEEEeecCchHHHHHHHHHHHH-HcCCCH------HHHHHHHHHhhhhHHHHhhcCCCCceeE
Q 010501 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ-RVGQEP------EEIIHQISETVYPMYKAFIEPDLQTAHI 235 (509)
Q Consensus 172 dElr~lLDlkIfVd~d~dirLiRRI~RD~~-erG~t~------e~Vi~~y~~~V~P~~~~fIeP~k~~ADI 235 (509)
|||+..||..+ -..+-.+++++. +.|.++ ..|+.++.+++.-||..-+..+....+|
T Consensus 179 DEPTTaLDvt~-------q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i 242 (539)
T COG1123 179 DEPTTALDVTT-------QAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEI 242 (539)
T ss_pred CCCccccCHHH-------HHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHH
Confidence 99999999842 334555555555 567663 5677777777777777666555544443
No 322
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=99.41 E-value=3.3e-13 Score=144.38 Aligned_cols=153 Identities=19% Similarity=0.254 Sum_probs=123.2
Q ss_pred cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc-------ccccccCCCCCCCch
Q 010501 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTDY 120 (509)
Q Consensus 49 ~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~-------r~i~~~fq~p~~~d~ 120 (509)
.++++++|+|.+.+|+ .+||+||||||||||+|.|.+.. |..|.+.+|+..... +.++|.+|+.++|+
T Consensus 348 ~~pil~~isF~l~~G~---~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~- 423 (580)
T COG4618 348 KKPILKGISFALQAGE---ALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFD- 423 (580)
T ss_pred CCcceecceeEecCCc---eEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecC-
Confidence 3579999999999999 99999999999999999999998 789999999985422 46899999999887
Q ss_pred hhHHHHHHhhccCcc-----------------eecc-ccccCCC----CcCCCeeeeecCccEEEEecceeeeccccCCC
Q 010501 121 DTLLENIRGLKEGKA-----------------VQVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (509)
Q Consensus 121 ~tl~e~L~~L~~g~~-----------------i~~P-~yD~~~~----~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lL 178 (509)
-++.|||..+.+.-. ...| -||-..+ ..|+|++|+++.++.+.-++.++.+|||...+
T Consensus 424 GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNL 503 (580)
T COG4618 424 GTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNL 503 (580)
T ss_pred CcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCc
Confidence 488999987663211 2234 4666554 47899999999999999999999999999999
Q ss_pred CeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 179 DLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 179 DlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
|- +...-+.+-+-.++.+|.+..-|.|
T Consensus 504 D~-------~GE~AL~~Ai~~~k~rG~~vvviaH 530 (580)
T COG4618 504 DS-------EGEAALAAAILAAKARGGTVVVIAH 530 (580)
T ss_pred ch-------hHHHHHHHHHHHHHHcCCEEEEEec
Confidence 97 4455555556677778877555444
No 323
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.41 E-value=4.3e-13 Score=134.76 Aligned_cols=149 Identities=12% Similarity=0.049 Sum_probs=104.9
Q ss_pred CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCCchhhHHHH
Q 010501 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLEN 126 (509)
Q Consensus 48 g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~d~~tl~e~ 126 (509)
+...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.|.+++.. .+.++.+...+..++.++
T Consensus 35 ~~~~il~~is~~i~~Ge---~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~~------~~~~~~~~~~~~~tv~en 105 (264)
T PRK13546 35 KTFFALDDISLKAYEGD---VIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEV------SVIAISAGLSGQLTGIEN 105 (264)
T ss_pred CceEEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEE------eEEecccCCCCCCcHHHH
Confidence 45679999999999999 99999999999999999999998 788999988731 122233333333455555
Q ss_pred HHhhc--cCc--------------cee-ccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCch
Q 010501 127 IRGLK--EGK--------------AVQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVH 189 (509)
Q Consensus 127 L~~L~--~g~--------------~i~-~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~d 189 (509)
+.... .+. ... .+..+......|+|+.+++..+++++.++.+++.|||.+.+|. ..
T Consensus 106 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~-------~~ 178 (264)
T PRK13546 106 IEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQ-------TF 178 (264)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCH-------HH
Confidence 53211 000 000 1223344567889999999999999999999999999999997 33
Q ss_pred HHHHHHHHHHHHHcCCCHHHHHH
Q 010501 190 FDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 190 irLiRRI~RD~~erG~t~e~Vi~ 212 (509)
.+.+..+.+++.+.|.++.-+.|
T Consensus 179 ~~~l~~~L~~~~~~g~tiIiisH 201 (264)
T PRK13546 179 AQKCLDKIYEFKEQNKTIFFVSH 201 (264)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcC
Confidence 44555566666666666444333
No 324
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=9.1e-14 Score=150.85 Aligned_cols=162 Identities=19% Similarity=0.232 Sum_probs=122.0
Q ss_pred eeeeEEEeCcE-EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccccc
Q 010501 40 EDTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~~-~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~ 110 (509)
.++++|.++.- ++++++++++++|+ .++|+|+||||||||++.|++++ |..|.|.++|.... ++.+.+
T Consensus 323 ~~~l~~~y~~g~~~l~~l~~t~~~g~---~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~ 399 (559)
T COG4988 323 LENLSFRYPDGKPALSDLNLTIKAGQ---LTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISW 399 (559)
T ss_pred ecceEEecCCCCcccCCceeEecCCc---EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeee
Confidence 46788877554 89999999999999 99999999999999999999999 69999999987433 246889
Q ss_pred cCCCCCCCchhhHHHHHHhhccC----------------cceecc-ccccCCCC----cCCCeeeeecCccEEEEeccee
Q 010501 111 NFDDPRLTDYDTLLENIRGLKEG----------------KAVQVP-IYDFKSSS----RIGYRTLEVPSSRIVIIEGIYA 169 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~g----------------~~i~~P-~yD~~~~~----rsgg~~~~v~~a~VLIVEGi~a 169 (509)
+.|+|-.+ ..++++|+...+.. ..+..| ..|...++ .|+|+.+++..+|+++-.+.+.
T Consensus 400 v~Q~p~lf-~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~ 478 (559)
T COG4988 400 VSQNPYLF-AGTIRENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLL 478 (559)
T ss_pred eCCCCccc-cccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEE
Confidence 99999765 46888888655431 112222 34444433 6889999999999999999999
Q ss_pred eeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHH
Q 010501 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (509)
Q Consensus 170 L~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~ 213 (509)
+.|||+..+|. +....+.....+..+. +++.-+.|+
T Consensus 479 llDEpTA~LD~-------etE~~i~~~l~~l~~~-ktvl~itHr 514 (559)
T COG4988 479 LLDEPTAHLDA-------ETEQIILQALQELAKQ-KTVLVITHR 514 (559)
T ss_pred EecCCccCCCH-------hHHHHHHHHHHHHHhC-CeEEEEEcC
Confidence 99999999998 3444555544444433 444443343
No 325
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=99.41 E-value=2.9e-13 Score=146.38 Aligned_cols=157 Identities=18% Similarity=0.161 Sum_probs=112.4
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------ccccccc
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGN 111 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~~~ 111 (509)
+++++. ...+++++||.+.+|+ ++||+|+||||||||+++|++++ |..|.|.+++.... .+.++++
T Consensus 254 ~~l~~~--~~~~l~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~ 328 (491)
T PRK10982 254 RNLTSL--RQPSIRDVSFDLHKGE---ILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALV 328 (491)
T ss_pred eCcccc--cCcccceeeEEEeCCc---EEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEc
Confidence 445554 2458999999999999 99999999999999999999998 78999999985432 1236777
Q ss_pred CCCCC---CCchhhHHHH-----HHhhcc--C----c-----------ceec--cccccCCCCcCCCeeeeecCccEEEE
Q 010501 112 FDDPR---LTDYDTLLEN-----IRGLKE--G----K-----------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVII 164 (509)
Q Consensus 112 fq~p~---~~d~~tl~e~-----L~~L~~--g----~-----------~i~~--P~yD~~~~~rsgg~~~~v~~a~VLIV 164 (509)
+|++. .++..++.++ +..... + . .... +..+...+..|+|+++++..+++++.
T Consensus 329 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~ 408 (491)
T PRK10982 329 TEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLT 408 (491)
T ss_pred CCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhc
Confidence 77742 3444443322 221100 0 0 0111 23455667899999999999999999
Q ss_pred ecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHH
Q 010501 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (509)
Q Consensus 165 EGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~ 209 (509)
++.++++|||+..+|.. ....+.++.+++.+.|.++.-
T Consensus 409 ~p~illLDEPt~gLD~~-------~~~~~~~~l~~l~~~~~tvi~ 446 (491)
T PRK10982 409 QPEILMLDEPTRGIDVG-------AKFEIYQLIAELAKKDKGIII 446 (491)
T ss_pred CCCEEEEcCCCcccChh-------HHHHHHHHHHHHHHCCCEEEE
Confidence 99999999999999983 455566666666666666433
No 326
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.40 E-value=4.2e-13 Score=126.18 Aligned_cols=157 Identities=18% Similarity=0.187 Sum_probs=124.6
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCc--cCc-----------c
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY--NDS-----------S 105 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y--~~~-----------~ 105 (509)
.+++.|.||...+|-+|+|..++|+ .+.+.||||+|||||++.|.-+- |.+|.+.+-+- +.. +
T Consensus 5 v~~in~~yg~~q~lfdi~l~~~~ge---tlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 5 LNGINCFYGAHQALFDITLDCPEGE---TLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred EcccccccccchheeeeeecCCCCC---EEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 4678889999999999999999999 99999999999999999986554 88999888654 211 1
Q ss_pred ccccccCCCCCCCchhhHHHHHHhhc-c--C--------------ccee-ccccccCCCCcCCCeeeeecCccEEEEecc
Q 010501 106 RIIDGNFDDPRLTDYDTLLENIRGLK-E--G--------------KAVQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 106 r~i~~~fq~p~~~d~~tl~e~L~~L~-~--g--------------~~i~-~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi 167 (509)
+.++++||...+|+++++.+|+-..- . | +... .+.-|+-.-..|||+.+++++++.+.+++.
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpq 161 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQ 161 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCc
Confidence 35789999999999999999974311 0 0 0011 123344455678999999999999999999
Q ss_pred eeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 168 ~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
.+|.|||...+|.- -+.-+-.|++.+.+.|.+
T Consensus 162 vllfdeptaaldpe-------itaqvv~iikel~~tgit 193 (242)
T COG4161 162 VLLFDEPTAALDPE-------ITAQIVSIIKELAETGIT 193 (242)
T ss_pred EEeecCcccccCHH-------HHHHHHHHHHHHHhcCce
Confidence 99999999999983 356677788888888865
No 327
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=99.40 E-value=3.3e-13 Score=130.06 Aligned_cols=137 Identities=18% Similarity=0.134 Sum_probs=112.4
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCc-cCc--------ccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY-NDS--------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y-~~~--------~r~i~ 109 (509)
.++++.+++.+.+++++||.+..|+ +-+|+||||+||||++..|.+.- |..|.+.+++- ... +..++
T Consensus 8 ~~~vsVsF~GF~Aln~ls~~v~~Ge---lr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIG 84 (249)
T COG4674 8 LDGVSVSFGGFKALNDLSFSVDPGE---LRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIG 84 (249)
T ss_pred EeceEEEEcceeeeeeeEEEecCCe---EEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccC
Confidence 4678888899999999999999999 99999999999999999999998 78899999994 222 23467
Q ss_pred ccCCCCCCCchhhHHHHHHhhccC-cce------------------------eccccccCCCCcCCCeeeeecCccEEEE
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEG-KAV------------------------QVPIYDFKSSSRIGYRTLEVPSSRIVII 164 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g-~~i------------------------~~P~yD~~~~~rsgg~~~~v~~a~VLIV 164 (509)
--||.|..|+..++.+||...... +.+ .-+.-+......|.|++|.+++..++..
T Consensus 85 RKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q 164 (249)
T COG4674 85 RKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQ 164 (249)
T ss_pred ccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeecc
Confidence 889999999999999999764322 111 0123344445678899999999999999
Q ss_pred ecceeeeccccCCCC
Q 010501 165 EGIYALSEKLRPLID 179 (509)
Q Consensus 165 EGi~aL~dElr~lLD 179 (509)
++.++|.|||...+.
T Consensus 165 ~P~lLLlDEPvAGMT 179 (249)
T COG4674 165 DPKLLLLDEPVAGMT 179 (249)
T ss_pred CCcEEEecCccCCCc
Confidence 999999999988764
No 328
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.40 E-value=1.6e-13 Score=148.22 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=133.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------cccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~~ 110 (509)
..+++..+|...+|++++|.+.+|+ +++++|.||||||||++.|++.+ |+.|.|.+||.... ...+..
T Consensus 11 ~~~i~K~FggV~AL~~v~l~v~~GE---V~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~ 87 (500)
T COG1129 11 LRGISKSFGGVKALDGVSLTVRPGE---VHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIAT 87 (500)
T ss_pred eecceEEcCCceeeccceeEEeCce---EEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEE
Confidence 4678888999999999999999999 99999999999999999999999 89999999997432 134778
Q ss_pred cCCCCCCCchhhHHHHHHhhccCc----ceecc-----------c------cccCCCCcCCCeeeeecCccEEEEeccee
Q 010501 111 NFDDPRLTDYDTLLENIRGLKEGK----AVQVP-----------I------YDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~g~----~i~~P-----------~------yD~~~~~rsgg~~~~v~~a~VLIVEGi~a 169 (509)
+||++.+++.+++.+|+-.-++-. .+..+ . -+-..+..+.+++|-+++++++..+.-++
T Consensus 88 V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arll 167 (500)
T COG1129 88 VHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVL 167 (500)
T ss_pred EeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999999985433211 01110 0 12222455667888899999999999999
Q ss_pred eeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHH
Q 010501 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (509)
Q Consensus 170 L~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y 214 (509)
+.|||++.|+. .+.+.+-++.|+++++|.+...+-|+.
T Consensus 168 IlDEPTaaLt~-------~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl 205 (500)
T COG1129 168 ILDEPTAALTV-------KETERLFDLIRRLKAQGVAIIYISHRL 205 (500)
T ss_pred EEcCCcccCCH-------HHHHHHHHHHHHHHhCCCEEEEEcCcH
Confidence 99999999987 577888899999999999876666644
No 329
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=99.40 E-value=2e-13 Score=149.46 Aligned_cols=163 Identities=18% Similarity=0.219 Sum_probs=120.5
Q ss_pred eeeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
.++++|.+.. .++++++++.+++|+ .++|+|+||||||||++.|++.+ |..|.|.+||.... ++.++
T Consensus 333 ~~~v~f~y~~~~~~il~~inl~i~~G~---~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~ 409 (571)
T TIGR02203 333 FRNVTFRYPGRDRPALDSISLVIEPGE---TVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVA 409 (571)
T ss_pred EEEEEEEcCCCCCccccCeeEEecCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhce
Confidence 5788888743 579999999999999 99999999999999999999999 88999999996422 24588
Q ss_pred ccCCCCCCCchhhHHHHHHhhcc-Cc----------------ce-ecc-ccccCC----CCcCCCeeeeecCccEEEEec
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKE-GK----------------AV-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~-g~----------------~i-~~P-~yD~~~----~~rsgg~~~~v~~a~VLIVEG 166 (509)
+++|+|..|+ .++++|+..... .. .+ ..| .+|... ...|+|+.|++..++.++-++
T Consensus 410 ~v~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~ 488 (571)
T TIGR02203 410 LVSQDVVLFN-DTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDA 488 (571)
T ss_pred EEccCccccc-ccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999997775 588999875432 10 00 122 233332 246899999999999999999
Q ss_pred ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHH
Q 010501 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (509)
Q Consensus 167 i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y 214 (509)
..++.|||++.+|.. ..+.+....++. ..+++..-|.|+.
T Consensus 489 ~illLDEpts~LD~~-------~~~~i~~~L~~~-~~~~tiIiitH~~ 528 (571)
T TIGR02203 489 PILILDEATSALDNE-------SERLVQAALERL-MQGRTTLVIAHRL 528 (571)
T ss_pred CEEEEeCccccCCHH-------HHHHHHHHHHHH-hCCCEEEEEehhh
Confidence 999999999999972 233333333333 2345555555543
No 330
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=99.40 E-value=2.5e-13 Score=146.70 Aligned_cols=155 Identities=12% Similarity=0.028 Sum_probs=111.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC--CeeEEEECCccCc--------ccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNYNDS--------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp--~~g~I~~D~y~~~--------~r~i~ 109 (509)
.+++++.++...+++++||.+.+|+ ++||+||||||||||+++|++..| ..|.|.++|.... .+.++
T Consensus 263 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 339 (490)
T PRK10938 263 LNNGVVSYNDRPILHNLSWQVNPGE---HWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIG 339 (490)
T ss_pred EeceEEEECCeeEEeeceEEEcCCC---EEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhce
Confidence 4678888887889999999999999 999999999999999999999875 4899999885321 13477
Q ss_pred ccCCCCCCCch--hhHHHHHHhh-c------cC--c-----------ceecc--ccccCCCCcCCCeeeeecCccEEEEe
Q 010501 110 GNFDDPRLTDY--DTLLENIRGL-K------EG--K-----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIE 165 (509)
Q Consensus 110 ~~fq~p~~~d~--~tl~e~L~~L-~------~g--~-----------~i~~P--~yD~~~~~rsgg~~~~v~~a~VLIVE 165 (509)
+++|++..+.. .++.+.+... . .. . ..... ..+......|+|+++++..+++++.+
T Consensus 340 ~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~ 419 (490)
T PRK10938 340 YVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKH 419 (490)
T ss_pred EECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcC
Confidence 88887644321 2333333210 0 00 0 01111 22444567899999999999999999
Q ss_pred cceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcC
Q 010501 166 GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVG 204 (509)
Q Consensus 166 Gi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG 204 (509)
+.+++.|||...+|. ...+.+..+.+++.+.|
T Consensus 420 p~lllLDEPt~gLD~-------~~~~~l~~~L~~l~~~~ 451 (490)
T PRK10938 420 PTLLILDEPLQGLDP-------LNRQLVRRFVDVLISEG 451 (490)
T ss_pred CCEEEEcCccccCCH-------HHHHHHHHHHHHHHhcC
Confidence 999999999999998 34555555555554443
No 331
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=99.40 E-value=4.9e-13 Score=146.50 Aligned_cols=137 Identities=15% Similarity=0.104 Sum_probs=102.9
Q ss_pred eeeeEEEeCc-EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccccc
Q 010501 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~-~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~ 110 (509)
.++++|.++. .++|+++|+.+++|+ .++|+|+||||||||++.|++.+ |..|.|.+||.... ++.+++
T Consensus 325 ~~~v~f~y~~~~~~l~~i~~~i~~G~---~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 401 (547)
T PRK10522 325 LRNVTFAYQDNGFSVGPINLTIKRGE---LLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSA 401 (547)
T ss_pred EEEEEEEeCCCCeEEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEE
Confidence 5678888753 569999999999999 99999999999999999999998 89999999998532 245788
Q ss_pred cCCCCCCCchhhHHH------------HHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCC
Q 010501 111 NFDDPRLTDYDTLLE------------NIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e------------~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lL 178 (509)
++|++..++. ++.+ .+..+.-+..+..+.--......|+|+.+++..+++++-++.+++.||+++.+
T Consensus 402 v~q~~~lf~~-ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~L 480 (547)
T PRK10522 402 VFTDFHLFDQ-LLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQ 480 (547)
T ss_pred EecChhHHHH-hhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 8888765543 2222 12222111111111100012367899999999999999999999999999999
Q ss_pred Ce
Q 010501 179 DL 180 (509)
Q Consensus 179 Dl 180 (509)
|.
T Consensus 481 D~ 482 (547)
T PRK10522 481 DP 482 (547)
T ss_pred CH
Confidence 97
No 332
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.40 E-value=1.3e-13 Score=130.17 Aligned_cols=133 Identities=16% Similarity=0.259 Sum_probs=104.9
Q ss_pred EEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc-------ccccccCCCC
Q 010501 44 SFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDP 115 (509)
Q Consensus 44 sf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~-------r~i~~~fq~p 115 (509)
.+..+...+|+++||.+.+|+ .++|.||||||||||+++++.+. |+.|.+.+.|..... ..++|..|.|
T Consensus 10 ~y~a~~a~il~~isl~v~~Ge---~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~p 86 (223)
T COG4619 10 GYLAGDAKILNNISLSVRAGE---FIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTP 86 (223)
T ss_pred HhhcCCCeeecceeeeecCCc---eEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCc
Confidence 344567889999999999999 99999999999999999999998 899999999874432 3578888888
Q ss_pred CCCchhhHHHHHHh---hccCc-----------ceeccc--cccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCC
Q 010501 116 RLTDYDTLLENIRG---LKEGK-----------AVQVPI--YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (509)
Q Consensus 116 ~~~d~~tl~e~L~~---L~~g~-----------~i~~P~--yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLD 179 (509)
.+|. +++++|+.+ +++.+ ....|. .+......|||+.++++..+-|-.-+..+|+||+++.+|
T Consensus 87 aLfg-~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD 165 (223)
T COG4619 87 ALFG-DTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALD 165 (223)
T ss_pred cccc-cchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcC
Confidence 7764 677777754 22221 122232 233445678999999999999999999999999999999
Q ss_pred e
Q 010501 180 L 180 (509)
Q Consensus 180 l 180 (509)
.
T Consensus 166 ~ 166 (223)
T COG4619 166 E 166 (223)
T ss_pred h
Confidence 7
No 333
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.40 E-value=3.7e-13 Score=150.32 Aligned_cols=134 Identities=12% Similarity=0.120 Sum_probs=106.6
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCC-CC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDP-RL 117 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p-~~ 117 (509)
.+++++.++...++++++|.+.+|+ ++||+||||||||||+++|++.+ |..|.|.++. .-.+++++|++ ..
T Consensus 322 ~~~l~~~~~~~~il~~vsl~i~~Ge---~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~----~~~i~y~~q~~~~l 394 (635)
T PRK11147 322 MENVNYQIDGKQLVKDFSAQVQRGD---KIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGT----KLEVAYFDQHRAEL 394 (635)
T ss_pred EeeeEEEECCeEEEcCcEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECC----CcEEEEEeCccccc
Confidence 4778888888889999999999999 99999999999999999999998 7899998742 12477888875 35
Q ss_pred CchhhHHHHHHhhccCc-----c---------eec--cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 118 TDYDTLLENIRGLKEGK-----A---------VQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 118 ~d~~tl~e~L~~L~~g~-----~---------i~~--P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
++..++.+++....... . ... ...+...+..|+|+.+++..+++++.++.++++|||++.+|+
T Consensus 395 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~ 473 (635)
T PRK11147 395 DPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDV 473 (635)
T ss_pred CCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 56668888876422110 0 001 112334567899999999999999999999999999999998
No 334
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=99.39 E-value=2.2e-13 Score=149.60 Aligned_cols=162 Identities=14% Similarity=0.132 Sum_probs=114.8
Q ss_pred eeeeEEEeCc-----EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc-------c
Q 010501 40 EDTLSFEKGF-----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------R 106 (509)
Q Consensus 40 ~~~lsf~~g~-----~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~-------r 106 (509)
.++++|.++. ..+|+++||.+++|+ +++|+||||||||||++.|++.+ |..|.|.+||..... +
T Consensus 340 ~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~---~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~ 416 (555)
T TIGR01194 340 LKDVHMNPKAPEGSEGFALGPIDLRIAQGD---IVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRD 416 (555)
T ss_pred EEEEEEEeCCCCCCcCceeccceEEEcCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHh
Confidence 4788888864 259999999999999 99999999999999999999998 899999999875321 4
Q ss_pred cccccCCCCCCCchhhHHHHH-------------HhhccCcce-eccc-cccCCCCcCCCeeeeecCccEEEEecceeee
Q 010501 107 IIDGNFDDPRLTDYDTLLENI-------------RGLKEGKAV-QVPI-YDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (509)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~e~L-------------~~L~~g~~i-~~P~-yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~ 171 (509)
.+++++|++..|+. ++.++. +.+.-...+ ..|. ||. ....|+|+.+++..+++++-++..++.
T Consensus 417 ~i~~v~q~~~lf~~-ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t-~~~LSgGq~qRlalaRall~~~~ilil 494 (555)
T TIGR01194 417 LFSAIFADFHLFDD-LIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFST-TTALSTGQQKRLALICAWLEDRPILLF 494 (555)
T ss_pred hCcEEccChhhhhh-hhhcccccchhHHHHHHHHHHcCCchhhcccccccCC-cccCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 57888888766542 333332 111001111 1121 222 246889999999999999999999999
Q ss_pred ccccCCCCeEEEeecCchHHHH-HHHHHHHHHcCCCHHHHHHH
Q 010501 172 EKLRPLIDLRVSVTGGVHFDLV-KRVFRDIQRVGQEPEEIIHQ 213 (509)
Q Consensus 172 dElr~lLDlkIfVd~d~dirLi-RRI~RD~~erG~t~e~Vi~~ 213 (509)
||+.+.+|.. ..+.+ ..+.+.....|++..-+.|+
T Consensus 495 DE~ts~LD~~-------~~~~i~~~l~~~~~~~~~tiiiisH~ 530 (555)
T TIGR01194 495 DEWAADQDPA-------FKRFFYEELLPDLKRQGKTIIIISHD 530 (555)
T ss_pred eCCccCCCHH-------HHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 9999999972 23333 23444444456665544443
No 335
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.39 E-value=4.4e-13 Score=145.86 Aligned_cols=147 Identities=16% Similarity=0.123 Sum_probs=111.1
Q ss_pred EeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------cccccccCCCC---CCCc
Q 010501 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDGNFDDP---RLTD 119 (509)
Q Consensus 52 iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~~~fq~p---~~~d 119 (509)
++++++|.+++|+ +++|+||||||||||+++|++++ |..|.|.+++.... ...+++++|++ ..++
T Consensus 278 ~l~~isl~i~~Ge---~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~ 354 (510)
T PRK15439 278 GFRNISLEVRAGE---ILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYL 354 (510)
T ss_pred CccceeEEEcCCc---EEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccC
Confidence 5899999999999 99999999999999999999998 78999999886432 12478888874 3555
Q ss_pred hhhHHHHHHhh-----c---cCc-----------ceec--cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCC
Q 010501 120 YDTLLENIRGL-----K---EGK-----------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (509)
Q Consensus 120 ~~tl~e~L~~L-----~---~g~-----------~i~~--P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lL 178 (509)
..++.+++... . ... .... ...+...+..|+|+++++..+++++.++.++++|||...+
T Consensus 355 ~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gL 434 (510)
T PRK15439 355 DAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGV 434 (510)
T ss_pred CCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCc
Confidence 56666665321 0 000 0111 1234455678999999999999999999999999999999
Q ss_pred CeEEEeecCchHHHHHHHHHHHHHcCCCHH
Q 010501 179 DLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (509)
Q Consensus 179 DlkIfVd~d~dirLiRRI~RD~~erG~t~e 208 (509)
|. ...+.+..+.+++.+.|.++.
T Consensus 435 D~-------~~~~~l~~~l~~l~~~g~tiI 457 (510)
T PRK15439 435 DV-------SARNDIYQLIRSIAAQNVAVL 457 (510)
T ss_pred Ch-------hHHHHHHHHHHHHHhCCCEEE
Confidence 98 355666667777766666543
No 336
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.39 E-value=3.4e-13 Score=134.11 Aligned_cols=143 Identities=15% Similarity=0.199 Sum_probs=103.5
Q ss_pred Eeeeeceee-----ecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCCchhhHHH
Q 010501 52 VIRACQLLA-----QKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLE 125 (509)
Q Consensus 52 iLk~IsL~i-----~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~d~~tl~e 125 (509)
.+.+++|.+ .+|+ +++|+|+||||||||+++|++.+ |..|.|.+++. .+++.+|++......++.+
T Consensus 9 ~~~~~~l~~~~~~i~~Ge---~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~-----~i~~~~q~~~~~~~~tv~e 80 (246)
T cd03237 9 TLGEFTLEVEGGSISESE---VIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD-----TVSYKPQYIKADYEGTVRD 80 (246)
T ss_pred ccCcEEEEEecCCcCCCC---EEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc-----eEEEecccccCCCCCCHHH
Confidence 444555555 5789 99999999999999999999998 78999998874 4677778776656667777
Q ss_pred HHHhhccC--c----------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHH
Q 010501 126 NIRGLKEG--K----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDL 192 (509)
Q Consensus 126 ~L~~L~~g--~----------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirL 192 (509)
++...... . .... ...+...+..|+|+.+++..+++++.++.+++.|||...||. .....
T Consensus 81 ~l~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~-------~~~~~ 153 (246)
T cd03237 81 LLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV-------EQRLM 153 (246)
T ss_pred HHHHHhhhccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH-------HHHHH
Confidence 76532110 0 0111 123445567899999999999999999999999999999998 33444
Q ss_pred HHHHHHHHHH-cCCCHHH
Q 010501 193 VKRVFRDIQR-VGQEPEE 209 (509)
Q Consensus 193 iRRI~RD~~e-rG~t~e~ 209 (509)
+..+++.+.. .|.++.-
T Consensus 154 l~~~l~~~~~~~~~tiii 171 (246)
T cd03237 154 ASKVIRRFAENNEKTAFV 171 (246)
T ss_pred HHHHHHHHHHhcCCEEEE
Confidence 5555555543 3555433
No 337
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.38 E-value=5.3e-13 Score=149.24 Aligned_cols=138 Identities=14% Similarity=0.138 Sum_probs=95.8
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccC----c-------ccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND----S-------SRI 107 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~----~-------~r~ 107 (509)
.+++++.+|...+|+++||.+.+|+ ++||+||||||||||+++|++.+ |+.|.|.+++... . ...
T Consensus 4 i~nls~~~g~~~~l~~vs~~i~~Ge---~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~~i~~~~q~~~~~~~~~ 80 (638)
T PRK10636 4 FSSLQIRRGVRVLLDNATATINPGQ---KVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNWQLAWVNQETPALPQPA 80 (638)
T ss_pred EEEEEEEeCCceeecCcEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCCEEEEEecCCCCCCCCH
Confidence 4678999999999999999999999 99999999999999999999987 7899998876310 0 001
Q ss_pred ccccCCCCCCCchhhH-----------------H------------HHHHhhccCcceeccccccCCCCcCCCeeeeecC
Q 010501 108 IDGNFDDPRLTDYDTL-----------------L------------ENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPS 158 (509)
Q Consensus 108 i~~~fq~p~~~d~~tl-----------------~------------e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~ 158 (509)
++++++.+..+...+. . +.+..+..+-.+.....+......|+|+.+++..
T Consensus 81 ~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~L 160 (638)
T PRK10636 81 LEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNL 160 (638)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHH
Confidence 1222221111000000 0 0000000000111123355567789999999999
Q ss_pred ccEEEEecceeeeccccCCCCe
Q 010501 159 SRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 159 a~VLIVEGi~aL~dElr~lLDl 180 (509)
+++++.++.++|+|||++.||+
T Consensus 161 A~aL~~~P~lLLLDEPtn~LD~ 182 (638)
T PRK10636 161 AQALICRSDLLLLDEPTNHLDL 182 (638)
T ss_pred HHHHccCCCEEEEcCCCCcCCH
Confidence 9999999999999999999997
No 338
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=99.38 E-value=3.9e-13 Score=164.59 Aligned_cols=157 Identities=11% Similarity=0.048 Sum_probs=126.8
Q ss_pred eeeeEEEeC--cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc------cccccc
Q 010501 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g--~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~------~r~i~~ 110 (509)
.+++++.++ .+.+++++++.+.+|+ +++|+|+||||||||+++|+|++ |+.|.|.++|.... ++.+++
T Consensus 931 I~nLsK~y~~~~k~aL~~lsl~I~~Ge---i~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~IG~ 1007 (2272)
T TIGR01257 931 VKNLVKIFEPSGRPAVDRLNITFYENQ---ITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSLGM 1007 (2272)
T ss_pred EEeEEEEecCCCceEEEeeEEEEcCCc---EEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcEEE
Confidence 467777773 5789999999999999 99999999999999999999998 89999999997542 235789
Q ss_pred cCCCCCCCchhhHHHHHHhhcc--Ccc--------------eecc-ccccCCCCcCCCeeeeecCccEEEEecceeeecc
Q 010501 111 NFDDPRLTDYDTLLENIRGLKE--GKA--------------VQVP-IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~--g~~--------------i~~P-~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dE 173 (509)
.+|++..++..++.+++..... +.. +... ..+...++.|+|+++++..+++++.++.++++||
T Consensus 1008 ~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDE 1087 (2272)
T TIGR01257 1008 CPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDE 1087 (2272)
T ss_pred EecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 9999999999999999976421 100 1111 2344556789999999999999999999999999
Q ss_pred ccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 174 lr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
|...+|. ...+.+..+.++++ .|+++
T Consensus 1088 PTSGLDp-------~sr~~l~~lL~~l~-~g~TI 1113 (2272)
T TIGR01257 1088 PTSGVDP-------YSRRSIWDLLLKYR-SGRTI 1113 (2272)
T ss_pred CCcCCCH-------HHHHHHHHHHHHHh-CCCEE
Confidence 9999998 45667777777774 47663
No 339
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.38 E-value=2.3e-13 Score=136.91 Aligned_cols=192 Identities=17% Similarity=0.179 Sum_probs=131.1
Q ss_pred eeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccC-----------ccccccccCCCCCCCchhh
Q 010501 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----------SSRIIDGNFDDPRLTDYDT 122 (509)
Q Consensus 55 ~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~-----------~~r~i~~~fq~p~~~d~~t 122 (509)
+++|..+..+ +.+|-|+||||||||+++|+++. |+.|.|.++|.-. ..++++|+||+..+|++.+
T Consensus 16 ~a~~~~p~~G---vTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~t 92 (352)
T COG4148 16 DANFTLPARG---ITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYT 92 (352)
T ss_pred EEeccCCCCc---eEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceE
Confidence 4566666657 99999999999999999999999 9999999999722 2367999999999999999
Q ss_pred HHHHHHhhccCc-c----------eeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHH
Q 010501 123 LLENIRGLKEGK-A----------VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFD 191 (509)
Q Consensus 123 l~e~L~~L~~g~-~----------i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dir 191 (509)
++.||..-.... . .--|..++.+.+.|||++|++++.++|+-.+.++|.|||...+|..= -.+-.-
T Consensus 93 VrgNL~YG~~~~~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R---K~Eilp 169 (352)
T COG4148 93 VRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR---KREILP 169 (352)
T ss_pred EecchhhhhcccchHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch---hhHHHH
Confidence 999998744221 0 01145667778899999999999999999999999999999999620 000111
Q ss_pred HHHHHHHHHH----HcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEcCCCCCCcCCCCccee
Q 010501 192 LVKRVFRDIQ----RVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYI 253 (509)
Q Consensus 192 LiRRI~RD~~----erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~~~p~~g~~~~~~i 253 (509)
.+.|+..+.. .=-.++.++.. ..++|.-+...-+......+++-=.-+|.|+.+..+.-.+
T Consensus 170 ylERL~~e~~IPIlYVSHS~~Ev~R-LAd~vV~le~GkV~A~g~~e~v~~~~~~~p~~~~~e~~~v 234 (352)
T COG4148 170 YLERLRDEINIPILYVSHSLDEVLR-LADRVVVLENGKVKASGPLEEVWGSPDFPPWLPREEQSSV 234 (352)
T ss_pred HHHHHHHhcCCCEEEEecCHHHHHh-hhheEEEecCCeEEecCcHHHHhcCcccCcccCccccceE
Confidence 2233322221 01223444433 4455555555555555555554444456666665544333
No 340
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=99.38 E-value=7.5e-13 Score=148.28 Aligned_cols=158 Identities=15% Similarity=0.151 Sum_probs=124.0
Q ss_pred eeeeEEEeC----cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------
Q 010501 40 EDTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (509)
Q Consensus 40 ~~~lsf~~g----~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---------- 104 (509)
.+++++.++ ...++++++|.+++|+ +++|+|+||||||||+++|++++ |..|.+.+|+....
T Consensus 7 ~~nl~~~y~~~~~~~~il~~vs~~i~~Ge---~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 7 LKDIRRSYPSGEEQVEVLKGISLDIYAGE---MVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EeeEEEEeCCCCCCeeeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 356777664 2579999999999999 99999999999999999999999 78999999997532
Q ss_pred -cccccccCCCCCCCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEec
Q 010501 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 105 -~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEG 166 (509)
.+.+++++|++..++..++.+++..... +. .... ...+...+..|+|+.+++..++.++-++
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P 163 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGG 163 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 2357899999988888888888754211 10 0001 1234455678899999999999999999
Q ss_pred ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 167 i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
.+++.|||...+|. ...+.+..+.+++.+.|.++
T Consensus 164 ~lLllDEP~~gLD~-------~s~~~l~~ll~~l~~~g~ti 197 (648)
T PRK10535 164 QVILADEPTGALDS-------HSGEEVMAILHQLRDRGHTV 197 (648)
T ss_pred CEEEEECCCCCCCH-------HHHHHHHHHHHHHHhcCCEE
Confidence 99999999999998 45666777777777677764
No 341
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=99.38 E-value=4.7e-13 Score=148.02 Aligned_cols=137 Identities=21% Similarity=0.305 Sum_probs=110.2
Q ss_pred eeeeEEEeCc-EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccccc
Q 010501 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~-~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~ 110 (509)
.++++|.++. ..+++++++.+++|+ .++|+||||||||||++.|++.+ |..|.|.+|+.... ++.+++
T Consensus 337 ~~~v~~~y~~~~~~l~~i~~~i~~G~---~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 413 (585)
T TIGR01192 337 FRHITFEFANSSQGVFDVSFEAKAGQ---TVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIAT 413 (585)
T ss_pred EEEEEEECCCCCccccceeEEEcCCC---EEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEE
Confidence 4788888864 568999999999999 99999999999999999999998 78999999987432 245789
Q ss_pred cCCCCCCCchhhHHHHHHhhccCc---c-------------e-ecc-ccccC----CCCcCCCeeeeecCccEEEEecce
Q 010501 111 NFDDPRLTDYDTLLENIRGLKEGK---A-------------V-QVP-IYDFK----SSSRIGYRTLEVPSSRIVIIEGIY 168 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~g~---~-------------i-~~P-~yD~~----~~~rsgg~~~~v~~a~VLIVEGi~ 168 (509)
++|+|..++ .++++|+....... . + ..| .++.. ....|+|+.+++..+++++-++.+
T Consensus 414 v~q~~~lf~-~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~i 492 (585)
T TIGR01192 414 VFQDAGLFN-RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPI 492 (585)
T ss_pred EccCCccCc-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 999998776 68899987543210 0 0 122 12322 235789999999999999999999
Q ss_pred eeeccccCCCCe
Q 010501 169 ALSEKLRPLIDL 180 (509)
Q Consensus 169 aL~dElr~lLDl 180 (509)
++.||+.+.+|.
T Consensus 493 lilDEpts~LD~ 504 (585)
T TIGR01192 493 LVLDEATSALDV 504 (585)
T ss_pred EEEECCccCCCH
Confidence 999999999997
No 342
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=99.37 E-value=6.5e-13 Score=144.84 Aligned_cols=153 Identities=13% Similarity=0.090 Sum_probs=109.2
Q ss_pred eeeeEEEeCc---EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCC
Q 010501 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDP 115 (509)
Q Consensus 40 ~~~lsf~~g~---~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p 115 (509)
.++++|.++. +.+|++++|.+.+|+ ++||+|+||||||||+++|++++ |..|.|.+++.... +.+ .+
T Consensus 24 lknL~~~~~~~~~~~IL~nVSfsI~~GE---ivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~---i~~---~~ 94 (549)
T PRK13545 24 LKDLFFRSKDGEYHYALNNISFEVPEGE---IVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL---IAI---SS 94 (549)
T ss_pred EEEEEEecCCCccceEEeeeEEEEeCCC---EEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee---EEe---cc
Confidence 3567777665 579999999999999 99999999999999999999998 78999999875311 111 12
Q ss_pred CCCchhhHHHHHHhhc--cCc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCC
Q 010501 116 RLTDYDTLLENIRGLK--EGK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (509)
Q Consensus 116 ~~~d~~tl~e~L~~L~--~g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lL 178 (509)
...+..++.+++.... .+. .... +..+......|+|+.+++..+++++.++.++++|||...+
T Consensus 95 ~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgL 174 (549)
T PRK13545 95 GLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVG 174 (549)
T ss_pred ccCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence 2233345666654311 000 0111 1234455678999999999999999999999999999999
Q ss_pred CeEEEeecCchHHHHHHHHHHHHHcCCCHH
Q 010501 179 DLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (509)
Q Consensus 179 DlkIfVd~d~dirLiRRI~RD~~erG~t~e 208 (509)
|. ...+.+.++++++.++|.++.
T Consensus 175 D~-------~sr~~LlelL~el~~~G~TII 197 (549)
T PRK13545 175 DQ-------TFTKKCLDKMNEFKEQGKTIF 197 (549)
T ss_pred CH-------HHHHHHHHHHHHHHhCCCEEE
Confidence 97 334455556666666666543
No 343
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=99.37 E-value=3.4e-13 Score=147.99 Aligned_cols=162 Identities=21% Similarity=0.299 Sum_probs=118.5
Q ss_pred eeeeEEEeCc---EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccc
Q 010501 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (509)
Q Consensus 40 ~~~lsf~~g~---~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i 108 (509)
.++++|.++. ..+|++++|.+++|+ .++|+|+||||||||++.|++++ |..|.|.+||.... ++.+
T Consensus 340 ~~~v~f~y~~~~~~~iL~~inl~i~~Ge---~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i 416 (576)
T TIGR02204 340 FEQVNFAYPARPDQPALDGLNLTVRPGE---TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARM 416 (576)
T ss_pred EEEEEEECCCCCCCccccceeEEecCCC---EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhc
Confidence 5778887753 569999999999999 99999999999999999999999 78999999997432 2458
Q ss_pred cccCCCCCCCchhhHHHHHHhhccCc---c-------------e-ecc-ccccC----CCCcCCCeeeeecCccEEEEec
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKEGK---A-------------V-QVP-IYDFK----SSSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~g~---~-------------i-~~P-~yD~~----~~~rsgg~~~~v~~a~VLIVEG 166 (509)
++++|+|..++ .++++|+....... . + ..| .+|.. ....|+|+.+++..+++++-++
T Consensus 417 ~~~~Q~~~lf~-~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~ 495 (576)
T TIGR02204 417 ALVPQDPVLFA-ASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDA 495 (576)
T ss_pred eEEccCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCC
Confidence 89999987664 57888886533110 0 0 012 12221 2347889999999999999999
Q ss_pred ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHH
Q 010501 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (509)
Q Consensus 167 i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~ 213 (509)
..++.||+++.+|.. ..+.+.+..++.. ++++..-+.|+
T Consensus 496 ~ililDEpts~lD~~-------~~~~i~~~l~~~~-~~~t~IiitH~ 534 (576)
T TIGR02204 496 PILLLDEATSALDAE-------SEQLVQQALETLM-KGRTTLIIAHR 534 (576)
T ss_pred CeEEEeCcccccCHH-------HHHHHHHHHHHHh-CCCEEEEEecc
Confidence 999999999999972 2333444444442 35555444444
No 344
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.37 E-value=7.6e-13 Score=144.88 Aligned_cols=134 Identities=21% Similarity=0.191 Sum_probs=104.3
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~ 118 (509)
..++++.+|.+.+++++++.+.+|+ .|||+|+||+|||||+++|++.+ |+.|.|..+.- ..+++..|++...
T Consensus 6 ~~~ls~~~g~~~l~~~~~l~~~~G~---riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~----~~v~~l~Q~~~~~ 78 (530)
T COG0488 6 LENLSLAYGDRPLLENVSLTLNPGE---RIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG----LRVGYLSQEPPLD 78 (530)
T ss_pred EeeeEEeeCCceeecCCcceeCCCC---EEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC----ceEEEeCCCCCcC
Confidence 4678889999999999999999999 99999999999999999999999 88999987642 2456667776666
Q ss_pred chhhHHHHHHhhcc-----------------------------------C-----------cceeccccccCCCCcCCCe
Q 010501 119 DYDTLLENIRGLKE-----------------------------------G-----------KAVQVPIYDFKSSSRIGYR 152 (509)
Q Consensus 119 d~~tl~e~L~~L~~-----------------------------------g-----------~~i~~P~yD~~~~~rsgg~ 152 (509)
+..++.+.+..-.. + .....+..+......|||+
T Consensus 79 ~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~~~~~~~LSGG~ 158 (530)
T COG0488 79 PEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGW 158 (530)
T ss_pred CCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcccCchhhcCHHH
Confidence 54444433211000 0 0011222255567889999
Q ss_pred eeeecCccEEEEecceeeeccccCCCCe
Q 010501 153 TLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 153 ~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
..++..+++|+-++.++|+|||+++||+
T Consensus 159 r~Rv~LA~aL~~~pDlLLLDEPTNHLD~ 186 (530)
T COG0488 159 RRRVALARALLEEPDLLLLDEPTNHLDL 186 (530)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCcccCH
Confidence 9999999999999999999999999996
No 345
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=99.37 E-value=3e-13 Score=162.99 Aligned_cols=164 Identities=16% Similarity=0.209 Sum_probs=125.9
Q ss_pred eeeeEEEeCc---EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEEC-CccCc-------ccc
Q 010501 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMD-NYNDS-------SRI 107 (509)
Q Consensus 40 ~~~lsf~~g~---~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D-~y~~~-------~r~ 107 (509)
.++++|.|+. ..+|++++|.+++|+ +++|+||||||||||+++|++++ |..|.|.++ +.... ++.
T Consensus 385 ~~nVsf~Y~~~~~~~vL~~isl~i~~Ge---~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~ 461 (1466)
T PTZ00265 385 FKNVRFHYDTRKDVEIYKDLNFTLTEGK---TYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSK 461 (1466)
T ss_pred EEEEEEEcCCCCCCceeccceEEEcCCC---EEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHh
Confidence 5788888864 369999999999999 99999999999999999999998 899999994 44221 245
Q ss_pred ccccCCCCCCCchhhHHHHHHhhccCc-----------------------------------------------------
Q 010501 108 IDGNFDDPRLTDYDTLLENIRGLKEGK----------------------------------------------------- 134 (509)
Q Consensus 108 i~~~fq~p~~~d~~tl~e~L~~L~~g~----------------------------------------------------- 134 (509)
+++++|+|.+|+ .++.+|+.......
T Consensus 462 Ig~V~Q~~~LF~-~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 540 (1466)
T PTZ00265 462 IGVVSQDPLLFS-NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKN 540 (1466)
T ss_pred ccEecccccchh-ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccc
Confidence 899999999887 59999997632100
Q ss_pred --c------------e-------ecc-ccc----cCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCc
Q 010501 135 --A------------V-------QVP-IYD----FKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGV 188 (509)
Q Consensus 135 --~------------i-------~~P-~yD----~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~ 188 (509)
. . ..| .|| ......|+|++|++..+++++-++.++++||+++.+|. .
T Consensus 541 ~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~-------~ 613 (1466)
T PTZ00265 541 YQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDN-------K 613 (1466)
T ss_pred cccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH-------H
Confidence 0 0 011 122 22346789999999999999999999999999999997 4
Q ss_pred hHHHHHHHHHHHHH-cCCCHHHHHHHH
Q 010501 189 HFDLVKRVFRDIQR-VGQEPEEIIHQI 214 (509)
Q Consensus 189 dirLiRRI~RD~~e-rG~t~e~Vi~~y 214 (509)
....+....+++.. +|+|..-+.|+.
T Consensus 614 se~~i~~~L~~~~~~~g~TvIiIsHrl 640 (1466)
T PTZ00265 614 SEYLVQKTINNLKGNENRITIIIAHRL 640 (1466)
T ss_pred HHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 55666676777654 577766655554
No 346
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=99.36 E-value=3.6e-13 Score=151.47 Aligned_cols=137 Identities=17% Similarity=0.287 Sum_probs=110.3
Q ss_pred eeeeEEEeC--cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g--~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
.++++|.|+ ...+++++|+.+++|+ .++|+|+||||||||++.|++++ |..|.|.+||.... ++.++
T Consensus 458 ~~~vsf~y~~~~~~il~~i~l~i~~G~---~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~ 534 (694)
T TIGR01846 458 FENIRFRYAPDSPEVLSNLNLDIKPGE---FIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMG 534 (694)
T ss_pred EEEEEEEcCCCCccccccceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCe
Confidence 477888874 3569999999999999 99999999999999999999998 88999999998532 24578
Q ss_pred ccCCCCCCCchhhHHHHHHhhccCc----------------ce-ecc-ccccC----CCCcCCCeeeeecCccEEEEecc
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEGK----------------AV-QVP-IYDFK----SSSRIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g~----------------~i-~~P-~yD~~----~~~rsgg~~~~v~~a~VLIVEGi 167 (509)
+++|++..++ .++++|+....... .+ ..| .||.. ....|+|+.+++..+++++-++.
T Consensus 535 ~v~q~~~lf~-~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ 613 (694)
T TIGR01846 535 VVLQENVLFS-RSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPR 613 (694)
T ss_pred EEccCCeehh-hhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 9999998775 68899986532110 00 122 23332 23578999999999999999999
Q ss_pred eeeeccccCCCCe
Q 010501 168 YALSEKLRPLIDL 180 (509)
Q Consensus 168 ~aL~dElr~lLDl 180 (509)
.++.||+.+.+|.
T Consensus 614 ililDEpts~LD~ 626 (694)
T TIGR01846 614 ILIFDEATSALDY 626 (694)
T ss_pred EEEEECCCcCCCH
Confidence 9999999999997
No 347
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.36 E-value=3.7e-13 Score=134.68 Aligned_cols=157 Identities=12% Similarity=0.157 Sum_probs=109.0
Q ss_pred eeeeeEEEeCcE-EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEE-----------ECCccCcc
Q 010501 39 IEDTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT-----------MDNYNDSS 105 (509)
Q Consensus 39 i~~~lsf~~g~~-~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~-----------~D~y~~~~ 105 (509)
+.+++++.++.. .+++++++ +.+|+ +++|+||||||||||+++|++++ |..|.|. +++.....
T Consensus 2 ~~~~~~~~y~~~~~~l~~i~~-i~~Ge---~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~ 77 (255)
T cd03236 2 LEDEPVHRYGPNSFKLHRLPV-PREGQ---VLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQN 77 (255)
T ss_pred cccCcceeecCcchhhhcCCC-CCCCC---EEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhh
Confidence 346777777654 58999994 99999 99999999999999999999999 7899995 56653211
Q ss_pred ---------ccccccCCCCCCCchhhHHHHHHhhccCc-----------ceec-cccccCCCCcCCCeeeeecCccEEEE
Q 010501 106 ---------RIIDGNFDDPRLTDYDTLLENIRGLKEGK-----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVII 164 (509)
Q Consensus 106 ---------r~i~~~fq~p~~~d~~tl~e~L~~L~~g~-----------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIV 164 (509)
..++++++++..++. ++.+++....... .... ...+......|+|+.+++..+++++.
T Consensus 78 ~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~ 156 (255)
T cd03236 78 YFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELLKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALAR 156 (255)
T ss_pred hhHHhhhcccceeeecchhccCch-HHHHHHHHHhchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 113455666655542 3333332211000 0111 12334445678899999999999999
Q ss_pred ecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 165 EGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 165 EGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
++.+++.|||.+.+|. .....+..+.+++.+.|.++
T Consensus 157 ~p~illlDEPts~LD~-------~~~~~l~~~l~~l~~~~~tI 192 (255)
T cd03236 157 DADFYFFDEPSSYLDI-------KQRLNAARLIRELAEDDNYV 192 (255)
T ss_pred CCCEEEEECCCCCCCH-------HHHHHHHHHHHHHHhcCCEE
Confidence 9999999999999998 33445556666665556553
No 348
>PLN03130 ABC transporter C family member; Provisional
Probab=99.36 E-value=3.2e-13 Score=164.20 Aligned_cols=163 Identities=15% Similarity=0.147 Sum_probs=124.4
Q ss_pred eeeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
.++++|.|.. .++|+++||.+++|+ .|||+|+||||||||++.|.+++ |..|.|.+||.+.. ++.++
T Consensus 1240 f~nVsf~Y~~~~~~VL~~is~~I~~Ge---kVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~Is 1316 (1622)
T PLN03130 1240 FEDVVLRYRPELPPVLHGLSFEISPSE---KVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLG 1316 (1622)
T ss_pred EEEEEEEeCCCCCceecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccE
Confidence 4788888853 479999999999999 99999999999999999999998 88999999998543 25689
Q ss_pred ccCCCCCCCchhhHHHHHHhhccCc---------------ce-ecc-ccccCCC----CcCCCeeeeecCccEEEEecce
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEGK---------------AV-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIY 168 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g~---------------~i-~~P-~yD~~~~----~rsgg~~~~v~~a~VLIVEGi~ 168 (509)
+++|+|.+|+ .++++||....... .+ ..| .||...+ ..|+|++|++..+|+++-++..
T Consensus 1317 iVpQdp~LF~-GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~I 1395 (1622)
T PLN03130 1317 IIPQAPVLFS-GTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKI 1395 (1622)
T ss_pred EECCCCcccc-ccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 9999999886 48999986543210 00 123 3444332 5788999999999999999999
Q ss_pred eeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHH
Q 010501 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (509)
Q Consensus 169 aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y 214 (509)
++.||+++.+|. ...+.+.+.+|... .++|..-|.|+.
T Consensus 1396 LILDEATSaLD~-------~Te~~Iq~~I~~~~-~~~TvI~IAHRL 1433 (1622)
T PLN03130 1396 LVLDEATAAVDV-------RTDALIQKTIREEF-KSCTMLIIAHRL 1433 (1622)
T ss_pred EEEECCCCCCCH-------HHHHHHHHHHHHHC-CCCEEEEEeCCh
Confidence 999999999997 23445555555432 355555555544
No 349
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.36 E-value=6.4e-13 Score=139.12 Aligned_cols=133 Identities=20% Similarity=0.255 Sum_probs=107.2
Q ss_pred eCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCc----------cccccccCCCCC
Q 010501 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----------SRIIDGNFDDPR 116 (509)
Q Consensus 47 ~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~----------~r~i~~~fq~p~ 116 (509)
.....++++|||.+..|+ .+||+|.||||||||.++|.++++..|.|.++|.... ++.+..+||+|.
T Consensus 297 ~~~~~AVd~isl~L~~gq---TlGlVGESGSGKsTlG~allrL~~s~G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPy 373 (534)
T COG4172 297 VDHLRAVDGISLTLRRGQ---TLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPY 373 (534)
T ss_pred chheEEeccceeEecCCC---eEEEEecCCCCcchHHHHHHhhcCcCceEEECCccccccChhhhhhhhhhceEEEeCCC
Confidence 345679999999999999 9999999999999999999999988899999997542 245678999984
Q ss_pred --CCchhhHHHHHHhh-ccCc-----------------ce--eccccccCCCCcCCCeeeeecCccEEEEecceeeeccc
Q 010501 117 --LTDYDTLLENIRGL-KEGK-----------------AV--QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (509)
Q Consensus 117 --~~d~~tl~e~L~~L-~~g~-----------------~i--~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dEl 174 (509)
+.+.+++.+.+..- .-.. ++ .-...++..|+.|||+.+++++++++|+++.++++|||
T Consensus 374 gSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEP 453 (534)
T COG4172 374 GSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEP 453 (534)
T ss_pred CCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCC
Confidence 45677777777652 2111 11 11235566789999999999999999999999999999
Q ss_pred cCCCCeEE
Q 010501 175 RPLIDLRV 182 (509)
Q Consensus 175 r~lLDlkI 182 (509)
++.+|..|
T Consensus 454 TSALD~SV 461 (534)
T COG4172 454 TSALDRSV 461 (534)
T ss_pred chHhhHHH
Confidence 99999853
No 350
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=99.35 E-value=6.2e-13 Score=135.03 Aligned_cols=129 Identities=19% Similarity=0.154 Sum_probs=98.2
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLT 118 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~ 118 (509)
.+++++. ...+++++||.+.+|+ +++|+|+||||||||+++|++++ |..|.|.+++ .+++++|++..+
T Consensus 42 i~nls~~--~~~vL~~vs~~i~~Ge---~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------~i~yv~q~~~l~ 110 (282)
T cd03291 42 FSNLCLV--GAPVLKNINLKIEKGE---MLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------RISFSSQFSWIM 110 (282)
T ss_pred EEEEEEe--cccceeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------EEEEEeCccccc
Confidence 3555553 3569999999999999 99999999999999999999998 7899999887 367777777665
Q ss_pred chhhHHHHHHhhcc-Cc----------ce-----eccc-----cccCCCCcCCCeeeeecCccEEEEecceeeeccccCC
Q 010501 119 DYDTLLENIRGLKE-GK----------AV-----QVPI-----YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (509)
Q Consensus 119 d~~tl~e~L~~L~~-g~----------~i-----~~P~-----yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~l 177 (509)
+. ++.+++..... .. .+ ..|. .+......|+|+.+++..++.++.++.+++.|||...
T Consensus 111 ~~-tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~g 189 (282)
T cd03291 111 PG-TIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGY 189 (282)
T ss_pred cc-CHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCcc
Confidence 53 67777653210 00 00 0011 1111246788999999999999999999999999999
Q ss_pred CCe
Q 010501 178 IDL 180 (509)
Q Consensus 178 LDl 180 (509)
+|.
T Consensus 190 LD~ 192 (282)
T cd03291 190 LDV 192 (282)
T ss_pred CCH
Confidence 997
No 351
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=99.35 E-value=8.4e-13 Score=147.65 Aligned_cols=134 Identities=16% Similarity=0.126 Sum_probs=101.7
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCC--
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR-- 116 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~-- 116 (509)
.+++++.++...++++++|.+.+|+ ++||+||||||||||+++|++.+ |..|.|.+++- ..++|.+|++.
T Consensus 315 ~~~l~~~y~~~~il~~isl~i~~Ge---~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~----~~igy~~Q~~~~~ 387 (638)
T PRK10636 315 MEKVSAGYGDRIILDSIKLNLVPGS---RIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG----IKLGYFAQHQLEF 387 (638)
T ss_pred EEeeEEEeCCeeeeccceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC----EEEEEecCcchhh
Confidence 5678888888889999999999999 99999999999999999999998 78999988631 24677777631
Q ss_pred CCchhhHHHHHHhhccCc----------ceecc--ccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 117 LTDYDTLLENIRGLKEGK----------AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 117 ~~d~~tl~e~L~~L~~g~----------~i~~P--~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
.....++.+++..+.... ....+ ..+...+..|+|+.+++..+++++.++.++++|||++.||+
T Consensus 388 l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~ 463 (638)
T PRK10636 388 LRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDL 463 (638)
T ss_pred CCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 222334444432211100 01111 22334567899999999999999999999999999999998
No 352
>PLN03232 ABC transporter C family member; Provisional
Probab=99.34 E-value=3.1e-13 Score=163.47 Aligned_cols=163 Identities=17% Similarity=0.189 Sum_probs=125.1
Q ss_pred eeeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
.++++|.|.. .++|+++||.+++|+ .|||+|+||||||||++.|.+++ |..|.|.+||.+.. ++.++
T Consensus 1237 f~nVsf~Y~~~~~~vL~~isl~I~~Ge---kvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~ 1313 (1495)
T PLN03232 1237 FEDVHLRYRPGLPPVLHGLSFFVSPSE---KVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLS 1313 (1495)
T ss_pred EEEEEEEECCCCCcccccceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcE
Confidence 5788888843 579999999999999 99999999999999999999998 89999999998543 24689
Q ss_pred ccCCCCCCCchhhHHHHHHhhccCc---------------ce-ecc-ccccCC----CCcCCCeeeeecCccEEEEecce
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEGK---------------AV-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIY 168 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g~---------------~i-~~P-~yD~~~----~~rsgg~~~~v~~a~VLIVEGi~ 168 (509)
+++|+|..|+ .++++||....+.. .+ ..| .+|... ...|+|++|++..+|+++-++..
T Consensus 1314 iVpQdp~LF~-gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~I 1392 (1495)
T PLN03232 1314 IIPQSPVLFS-GTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKI 1392 (1495)
T ss_pred EECCCCeeeC-ccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCE
Confidence 9999998886 58999986543110 01 112 234332 24788999999999999999999
Q ss_pred eeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHH
Q 010501 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (509)
Q Consensus 169 aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y 214 (509)
++.||+++.+|. ...+.+.+..|.. .+++|..-|.|+.
T Consensus 1393 LILDEATSaLD~-------~Te~~Iq~~L~~~-~~~~TvI~IAHRl 1430 (1495)
T PLN03232 1393 LVLDEATASVDV-------RTDSLIQRTIREE-FKSCTMLVIAHRL 1430 (1495)
T ss_pred EEEECCcccCCH-------HHHHHHHHHHHHH-cCCCEEEEEeCCH
Confidence 999999999997 3344555555543 2466666665654
No 353
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=99.34 E-value=1.4e-12 Score=136.53 Aligned_cols=149 Identities=17% Similarity=0.261 Sum_probs=115.3
Q ss_pred CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccCcc-----------ccccc
Q 010501 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDSS-----------RIIDG 110 (509)
Q Consensus 48 g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp------~~g~I~~D~y~~~~-----------r~i~~ 110 (509)
+...++++|||.+..|+ .++|+|.||||||-.++.+++++| .+|.|.++|..... ..+++
T Consensus 21 ~~~~aVk~isf~i~~GE---tlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~M 97 (534)
T COG4172 21 GTVEAVKGISFDIEAGE---TLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGM 97 (534)
T ss_pred cceEeeccceeeecCCC---EEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEE
Confidence 36789999999999999 999999999999999999999995 36899999874321 25789
Q ss_pred cCCCCCC--CchhhHHHHHHhhcc---C--------------c--ceecc--ccccCCCCcCCCeeeeecCccEEEEecc
Q 010501 111 NFDDPRL--TDYDTLLENIRGLKE---G--------------K--AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 111 ~fq~p~~--~d~~tl~e~L~~L~~---g--------------~--~i~~P--~yD~~~~~rsgg~~~~v~~a~VLIVEGi 167 (509)
+||+|.. .+..++.+.+..... + + .+..| .++.-.|+.|||+.+++-++-+++.|+.
T Consensus 98 IFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~ 177 (534)
T COG4172 98 IFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPD 177 (534)
T ss_pred EecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCC
Confidence 9999953 566677766654221 1 0 12222 4677789999999999999999999999
Q ss_pred eeeeccccCCCCeEEEeecCchHHHHHHHHHHHH-HcCCC
Q 010501 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ-RVGQE 206 (509)
Q Consensus 168 ~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~-erG~t 206 (509)
+++.|||+..+|+.| -..+-.+.|++. +.|+.
T Consensus 178 lLIADEPTTALDVtv-------QaQIL~Ll~~Lq~~~gMa 210 (534)
T COG4172 178 LLIADEPTTALDVTV-------QAQILDLLKELQAELGMA 210 (534)
T ss_pred eEeecCCcchhhhhh-------HHHHHHHHHHHHHHhCcE
Confidence 999999999999865 234555566654 34554
No 354
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.34 E-value=2.6e-13 Score=126.23 Aligned_cols=138 Identities=15% Similarity=0.136 Sum_probs=115.3
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-C---CeeEEEECCccC-----ccccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDNYND-----SSRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p---~~g~I~~D~y~~-----~~r~i~~ 110 (509)
.++++...+.+-+|-++|+++.+|+ |+.|.||||||||||+..+.+.+ + -.|.+.+++... ..|.+++
T Consensus 5 l~nvsl~l~g~cLLa~~n~Tia~Ge---ivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~Gi 81 (213)
T COG4136 5 LKNVSLRLPGSCLLANVNFTIAKGE---IVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGI 81 (213)
T ss_pred eeeeeecCCCceEEEeeeEEecCCc---EEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheee
Confidence 4677888888999999999999999 99999999999999999999998 3 479999998753 2467899
Q ss_pred cCCCCCCCchhhHHHHHHhhcc----Cc------------ceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccc
Q 010501 111 NFDDPRLTDYDTLLENIRGLKE----GK------------AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~----g~------------~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dEl 174 (509)
.||++-+|++..+.+|+.+... |. ....-.|+....+.|||++-+++.-++++-++.++|+|||
T Consensus 82 LFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEP 161 (213)
T COG4136 82 LFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEP 161 (213)
T ss_pred eecccccccccccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCc
Confidence 9999999999999999865332 11 0111245666678899999999999999999999999999
Q ss_pred cCCCCe
Q 010501 175 RPLIDL 180 (509)
Q Consensus 175 r~lLDl 180 (509)
.+.+|.
T Consensus 162 FS~LD~ 167 (213)
T COG4136 162 FSRLDV 167 (213)
T ss_pred hhHHHH
Confidence 998886
No 355
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=99.33 E-value=1.4e-12 Score=146.39 Aligned_cols=133 Identities=13% Similarity=0.097 Sum_probs=104.4
Q ss_pred eeeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCC
Q 010501 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (509)
Q Consensus 40 ~~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~ 117 (509)
.++++|.+. ...+++++||.+++|+ +++|+||||||||||+++|++++ |..|.|..++ .+.+++++|+|..
T Consensus 454 ~~nv~~~~~~~~~il~~isl~i~~Ge---~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~----~~~i~~v~Q~~~l 526 (659)
T TIGR00954 454 FENIPLVTPNGDVLIESLSFEVPSGN---HLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----KGKLFYVPQRPYM 526 (659)
T ss_pred EEeeEEECCCCCeeeecceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC----CCcEEEECCCCCC
Confidence 577888763 4579999999999999 99999999999999999999998 5778888764 3467889999877
Q ss_pred CchhhHHHHHHhhc-------cC---cc-------------eecc-cccc---CCCCcCCCeeeeecCccEEEEecceee
Q 010501 118 TDYDTLLENIRGLK-------EG---KA-------------VQVP-IYDF---KSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 118 ~d~~tl~e~L~~L~-------~g---~~-------------i~~P-~yD~---~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
++. ++.+++.... .+ .. +..| .||. ..+..|+|+++++..+++++-++.+++
T Consensus 527 ~~~-tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~ill 605 (659)
T TIGR00954 527 TLG-TLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAI 605 (659)
T ss_pred CCc-CHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 765 8888876421 00 00 0001 0111 125689999999999999999999999
Q ss_pred eccccCCCCe
Q 010501 171 SEKLRPLIDL 180 (509)
Q Consensus 171 ~dElr~lLDl 180 (509)
+|||.+.+|.
T Consensus 606 LDEpts~LD~ 615 (659)
T TIGR00954 606 LDECTSAVSV 615 (659)
T ss_pred EeCCccCCCH
Confidence 9999999997
No 356
>PTZ00243 ABC transporter; Provisional
Probab=99.33 E-value=6.2e-13 Score=161.25 Aligned_cols=163 Identities=16% Similarity=0.132 Sum_probs=123.3
Q ss_pred eeeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
.++++|.|.. .++|++|||.+++|+ .|||+|+||||||||++.|.+++ |..|.|.+||.+.. ++.++
T Consensus 1311 f~nVsf~Y~~~~~~vL~~vsf~I~~Ge---kVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~ 1387 (1560)
T PTZ00243 1311 FEGVQMRYREGLPLVLRGVSFRIAPRE---KVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFS 1387 (1560)
T ss_pred EEEEEEEeCCCCCceeecceEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcce
Confidence 5788888754 469999999999999 99999999999999999999999 78999999998543 25689
Q ss_pred ccCCCCCCCchhhHHHHHHhhccCc---------------ce-ecc-ccccCC----CCcCCCeeeeecCccEEEEe-cc
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEGK---------------AV-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIE-GI 167 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g~---------------~i-~~P-~yD~~~----~~rsgg~~~~v~~a~VLIVE-Gi 167 (509)
+++|+|.+|+. ++++||....+-. .+ ..| .||... ...|+|++|++..+++|+-+ ..
T Consensus 1388 iVpQdp~LF~g-TIreNIdp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ 1466 (1560)
T PTZ00243 1388 MIPQDPVLFDG-TVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSG 1466 (1560)
T ss_pred EECCCCccccc-cHHHHhCcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCC
Confidence 99999998874 8999996532110 00 112 244332 34788999999999999996 68
Q ss_pred eeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHH
Q 010501 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (509)
Q Consensus 168 ~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y 214 (509)
+++.||+++.+|. ...+.+.+.++.. .+++|..-|.|+.
T Consensus 1467 ILlLDEATSaLD~-------~te~~Iq~~L~~~-~~~~TvI~IAHRl 1505 (1560)
T PTZ00243 1467 FILMDEATANIDP-------ALDRQIQATVMSA-FSAYTVITIAHRL 1505 (1560)
T ss_pred EEEEeCCCccCCH-------HHHHHHHHHHHHH-CCCCEEEEEeccH
Confidence 9999999999997 2344555555443 2456655555554
No 357
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.33 E-value=6.2e-13 Score=161.16 Aligned_cols=163 Identities=18% Similarity=0.172 Sum_probs=125.3
Q ss_pred eeeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
.++++|.|.. .++|+++||.+++|+ .|||+|+||||||||++.|.+++ |..|.|.+||.+.. ++.++
T Consensus 1287 f~nVsf~Y~~~~~~vL~~is~~I~~Ge---kiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~ 1363 (1522)
T TIGR00957 1287 FRNYCLRYREDLDLVLRHINVTIHGGE---KVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKIT 1363 (1522)
T ss_pred EEEEEEEeCCCCcccccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCe
Confidence 4678888754 479999999999999 99999999999999999999998 78999999998543 35689
Q ss_pred ccCCCCCCCchhhHHHHHHhhccCc---------------ce-ecc-ccccCCC----CcCCCeeeeecCccEEEEecce
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEGK---------------AV-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIY 168 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g~---------------~i-~~P-~yD~~~~----~rsgg~~~~v~~a~VLIVEGi~ 168 (509)
+++|+|..|+ .++++||.....-. .+ ..| .+|...+ ..|+|++|++..+|+++-++..
T Consensus 1364 iVpQdp~LF~-gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~I 1442 (1522)
T TIGR00957 1364 IIPQDPVLFS-GSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKI 1442 (1522)
T ss_pred EECCCCcccC-ccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCE
Confidence 9999999887 48999986432100 01 112 3444332 4788999999999999999999
Q ss_pred eeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHH
Q 010501 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (509)
Q Consensus 169 aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y 214 (509)
++.||+++.+|. .....+.+..|.. ..++|..-|.|+.
T Consensus 1443 LiLDEaTSalD~-------~Te~~Iq~~l~~~-~~~~TvI~IAHRl 1480 (1522)
T TIGR00957 1443 LVLDEATAAVDL-------ETDNLIQSTIRTQ-FEDCTVLTIAHRL 1480 (1522)
T ss_pred EEEECCcccCCH-------HHHHHHHHHHHHH-cCCCEEEEEecCH
Confidence 999999999997 2344555555543 2466766666654
No 358
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.33 E-value=7.3e-13 Score=126.68 Aligned_cols=131 Identities=13% Similarity=0.199 Sum_probs=99.8
Q ss_pred CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccC-------ccccccccCCCCCC--
Q 010501 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-------SSRIIDGNFDDPRL-- 117 (509)
Q Consensus 48 g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~-------~~r~i~~~fq~p~~-- 117 (509)
..+.+++.|||++++|+ .++|+|.||||||||+++|++.+ |.+|.|.++|... ..+.+.++||+|+.
T Consensus 24 ~~~~AV~~vSFtL~~~Q---TlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~ 100 (267)
T COG4167 24 QTVEAVKPVSFTLREGQ---TLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSL 100 (267)
T ss_pred hhhhcccceEEEecCCc---EEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCcccc
Confidence 34568999999999999 99999999999999999999999 8999999998632 22467889999875
Q ss_pred CchhhHHHHHHh-hccC-----------------cceecccc-ccCCCCcCCCeeeeecCccEEEEecceeeeccccCCC
Q 010501 118 TDYDTLLENIRG-LKEG-----------------KAVQVPIY-DFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (509)
Q Consensus 118 ~d~~tl~e~L~~-L~~g-----------------~~i~~P~y-D~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lL 178 (509)
.+...+.+.+.. |+.. ....+|.+ ++..+..+.++.++++.++++|+++..++.||....+
T Consensus 101 NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~L 180 (267)
T COG4167 101 NPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASL 180 (267)
T ss_pred ChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhc
Confidence 233334444432 1111 01233433 4455677888999999999999999999999988888
Q ss_pred CeE
Q 010501 179 DLR 181 (509)
Q Consensus 179 Dlk 181 (509)
|..
T Consensus 181 D~s 183 (267)
T COG4167 181 DMS 183 (267)
T ss_pred cHH
Confidence 873
No 359
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=99.32 E-value=1.1e-12 Score=127.83 Aligned_cols=145 Identities=19% Similarity=0.220 Sum_probs=104.5
Q ss_pred eeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--cccccccCCCCCCCc--hhhHHHHHHhhcc
Q 010501 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--SRIIDGNFDDPRLTD--YDTLLENIRGLKE 132 (509)
Q Consensus 58 L~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--~r~i~~~fq~p~~~d--~~tl~e~L~~L~~ 132 (509)
|.+++|+ +++|+|+||||||||+++|++.+ |..|.|.+|+.... .+.+++++|++..+. ..++.+++.....
T Consensus 1 l~i~~Ge---~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~ 77 (223)
T TIGR03771 1 LSADKGE---LLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRT 77 (223)
T ss_pred CccCCCc---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhccc
Confidence 4568899 99999999999999999999998 78999999986432 245788999876532 2466666643110
Q ss_pred --------C--c----------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHH
Q 010501 133 --------G--K----------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFD 191 (509)
Q Consensus 133 --------g--~----------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dir 191 (509)
. . .... +..+......|+|+.+++..+++++.++.+++.|||...+|. ....
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~-------~~~~ 150 (223)
T TIGR03771 78 GHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDM-------PTQE 150 (223)
T ss_pred cccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH-------HHHH
Confidence 0 0 0001 222334456888999999999999999999999999999998 3455
Q ss_pred HHHHHHHHHHHcCCCHHHHHH
Q 010501 192 LVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 192 LiRRI~RD~~erG~t~e~Vi~ 212 (509)
.+..+.+++.++|.++.-+.|
T Consensus 151 ~l~~~l~~~~~~~~tvii~sH 171 (223)
T TIGR03771 151 LLTELFIELAGAGTAILMTTH 171 (223)
T ss_pred HHHHHHHHHHHcCCEEEEEeC
Confidence 666666666656666443333
No 360
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.32 E-value=1.2e-12 Score=152.07 Aligned_cols=179 Identities=20% Similarity=0.227 Sum_probs=136.7
Q ss_pred eeceeeeeeeEEEeCcE---EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc----
Q 010501 34 YEIVPIEDTLSFEKGFF---IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS---- 105 (509)
Q Consensus 34 ~~~~~i~~~lsf~~g~~---~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~---- 105 (509)
++-.-..++++|.|..+ ++++++||.++.|+ .++|+|||||||||....|.+.+ |..|.|.+||++...
T Consensus 984 ~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~Gq---TvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~ 1060 (1228)
T KOG0055|consen 984 VKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQ---TVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNLK 1060 (1228)
T ss_pred ceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCC---EEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCHH
Confidence 33344567889988654 58999999999999 99999999999999999999998 899999999986432
Q ss_pred ---ccccccCCCCCCCchhhHHHHHHhhccCc-----------------ceecc-ccccCCC----CcCCCeeeeecCcc
Q 010501 106 ---RIIDGNFDDPRLTDYDTLLENIRGLKEGK-----------------AVQVP-IYDFKSS----SRIGYRTLEVPSSR 160 (509)
Q Consensus 106 ---r~i~~~fq~p~~~d~~tl~e~L~~L~~g~-----------------~i~~P-~yD~~~~----~rsgg~~~~v~~a~ 160 (509)
+.++.+-|+|.+|+ .+++||+..-...- -...| -||-..+ ++|||++||++++|
T Consensus 1061 ~LR~~i~lVsQEP~LF~-~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQKQRIAIAR 1139 (1228)
T KOG0055|consen 1061 WLRKQIGLVSQEPVLFN-GTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQKQRIAIAR 1139 (1228)
T ss_pred HHHHhcceeccCchhhc-ccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHHHHHHHHH
Confidence 46899999998886 68999987752210 11234 4776655 46899999999999
Q ss_pred EEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEE
Q 010501 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (509)
Q Consensus 161 VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII 237 (509)
+|+=++..+|+||-++.||. +..+.+....... ..|+|-.-|.|+.. +-++||.|.
T Consensus 1140 AilRnPkILLLDEATSALDs-------eSErvVQeALd~a-~~gRT~IvIAHRLS-------------TIqnaD~I~ 1195 (1228)
T KOG0055|consen 1140 AILRNPKILLLDEATSALDS-------ESERVVQEALDRA-MEGRTTIVIAHRLS-------------TIQNADVIA 1195 (1228)
T ss_pred HHHcCCCeeeeeccchhhhh-------hhHHHHHHHHHHh-hcCCcEEEEecchh-------------hhhcCCEEE
Confidence 99999999999999999997 4444444444332 34666555555542 347788775
No 361
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=99.32 E-value=7e-13 Score=147.69 Aligned_cols=156 Identities=14% Similarity=0.088 Sum_probs=120.1
Q ss_pred CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CC---eeEEEECCccCc----cccccccCCCCCCCc
Q 010501 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDS----SRIIDGNFDDPRLTD 119 (509)
Q Consensus 48 g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~---~g~I~~D~y~~~----~r~i~~~fq~p~~~d 119 (509)
+.+.+|+++++.+++|+ +++|.||||||||||+++|++.. +. .|.|.++|.... ++.+++++|++..++
T Consensus 36 ~~~~iL~~vs~~i~~Ge---~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~ 112 (617)
T TIGR00955 36 PRKHLLKNVSGVAKPGE---LLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIP 112 (617)
T ss_pred CccccccCCEEEEeCCe---EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCc
Confidence 45679999999999999 99999999999999999999988 32 699999998543 245799999999898
Q ss_pred hhhHHHHHHhhccC---cc----------------eec-cccccCCC------CcCCCeeeeecCccEEEEecceeeecc
Q 010501 120 YDTLLENIRGLKEG---KA----------------VQV-PIYDFKSS------SRIGYRTLEVPSSRIVIIEGIYALSEK 173 (509)
Q Consensus 120 ~~tl~e~L~~L~~g---~~----------------i~~-P~yD~~~~------~rsgg~~~~v~~a~VLIVEGi~aL~dE 173 (509)
..+++|++.....- .. ... +..|...+ ..|+|+++++..++.++-++.+++.||
T Consensus 113 ~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE 192 (617)
T TIGR00955 113 TLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE 192 (617)
T ss_pred cCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence 99999999753210 00 001 12233333 478999999999999999999999999
Q ss_pred ccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHH
Q 010501 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (509)
Q Consensus 174 lr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~ 213 (509)
|...+|. .....+.+..+++...|++..-++|+
T Consensus 193 PtsgLD~-------~~~~~l~~~L~~l~~~g~tvi~~~hq 225 (617)
T TIGR00955 193 PTSGLDS-------FMAYSVVQVLKGLAQKGKTIICTIHQ 225 (617)
T ss_pred CCcchhH-------HHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 9999997 34455666667777677775444444
No 362
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.32 E-value=9e-13 Score=128.00 Aligned_cols=120 Identities=14% Similarity=0.066 Sum_probs=90.9
Q ss_pred EeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEE-ECCccCccccccccCCCCCCCchhhHHHHHHh
Q 010501 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT-MDNYNDSSRIIDGNFDDPRLTDYDTLLENIRG 129 (509)
Q Consensus 52 iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~-~D~y~~~~r~i~~~fq~p~~~d~~tl~e~L~~ 129 (509)
+++++||.+++|+ +++|+||||||||||+++|++++ |..|.|. +++.... ..+.+..++..++.+++..
T Consensus 2 vl~~vs~~i~~Ge---~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~------~~~~~~l~~~ltv~enl~~ 72 (213)
T PRK15177 2 VLDKTDFVMGYHE---HIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP------LGANSFILPGLTGEENARM 72 (213)
T ss_pred eeeeeeEEEcCCC---EEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec------cccccccCCcCcHHHHHHH
Confidence 6899999999999 99999999999999999999998 7889886 6653221 1124455666778888765
Q ss_pred hcc--Ccc-----------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 130 LKE--GKA-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 130 L~~--g~~-----------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
... +.. ... ..++...+..|+|+.+++..+++++.++.+++.|||...+|.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~ 137 (213)
T PRK15177 73 MASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDN 137 (213)
T ss_pred HHHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCH
Confidence 322 100 001 123344456788999999999999999999999999888886
No 363
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.32 E-value=1.2e-12 Score=157.30 Aligned_cols=164 Identities=15% Similarity=0.084 Sum_probs=126.3
Q ss_pred eeeEEEeC----cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC----CeeEEEECCccCc---ccccc
Q 010501 41 DTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS---SRIID 109 (509)
Q Consensus 41 ~~lsf~~g----~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp----~~g~I~~D~y~~~---~r~i~ 109 (509)
+++++.++ .+.+|++||+.+++|+ +++|.||||||||||+++|++..+ ..|.|.+||.... ++.++
T Consensus 763 ~nl~~~~~~~~~~~~iL~~vs~~i~~Ge---~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~i~ 839 (1394)
T TIGR00956 763 RNLTYEVKIKKEKRVILNNVDGWVKPGT---LTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRSIG 839 (1394)
T ss_pred EeeEEEecCCCCCcEeeeCCEEEEECCE---EEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhccee
Confidence 55666553 4679999999999999 999999999999999999999983 5699999997542 34578
Q ss_pred ccCCCCCCCchhhHHHHHHhhc---cCcc----------------eec-cccccCCC----CcCCCeeeeecCccEEEEe
Q 010501 110 GNFDDPRLTDYDTLLENIRGLK---EGKA----------------VQV-PIYDFKSS----SRIGYRTLEVPSSRIVIIE 165 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~---~g~~----------------i~~-P~yD~~~~----~rsgg~~~~v~~a~VLIVE 165 (509)
+++|++..++..+++|++.... .... ... +..|...+ ..|+|+++++..+..++.+
T Consensus 840 yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~ 919 (1394)
T TIGR00956 840 YVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAK 919 (1394)
T ss_pred eecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcC
Confidence 9999988888899999987521 1000 001 12233333 5789999999999999999
Q ss_pred cc-eeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHH
Q 010501 166 GI-YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (509)
Q Consensus 166 Gi-~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y 214 (509)
+. ++++|||++.+|. .....+.++.++++..|+++.-++|+-
T Consensus 920 P~~iLlLDEPTsgLD~-------~~~~~i~~~L~~la~~g~tvI~t~H~~ 962 (1394)
T TIGR00956 920 PKLLLFLDEPTSGLDS-------QTAWSICKLMRKLADHGQAILCTIHQP 962 (1394)
T ss_pred CCeEEEEcCCCCCCCH-------HHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 95 8999999999997 345667777777777788866666653
No 364
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=99.32 E-value=2.2e-12 Score=144.12 Aligned_cols=135 Identities=14% Similarity=0.066 Sum_probs=93.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccC----c----cccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND----S----SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~----~----~r~i~~ 110 (509)
.+++++.++...+++++||.+.+|+ ++||+||||||||||+++|++.+ |+.|.|.+++-.. . ......
T Consensus 6 i~~ls~~~~~~~il~~is~~i~~Ge---~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~~~~~l~q~~~~~~~~~ 82 (635)
T PRK11147 6 IHGAWLSFSDAPLLDNAELHIEDNE---RVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDLIVARLQQDPPRNVEGT 82 (635)
T ss_pred EeeEEEEeCCceeEeCcEEEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCCEEEEeccCCCCCCCCC
Confidence 4678888888889999999999999 99999999999999999999998 7899998875210 0 001111
Q ss_pred cCCCCC-----CCchhh-------------HHHHHH----------------------hhccCcceeccccccCCCCcCC
Q 010501 111 NFDDPR-----LTDYDT-------------LLENIR----------------------GLKEGKAVQVPIYDFKSSSRIG 150 (509)
Q Consensus 111 ~fq~p~-----~~d~~t-------------l~e~L~----------------------~L~~g~~i~~P~yD~~~~~rsg 150 (509)
+++... .++... ..+++. .+..+ +... .+...+..|+
T Consensus 83 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~--lgl~-~~~~~~~LSg 159 (635)
T PRK11147 83 VYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQ--LGLD-PDAALSSLSG 159 (635)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHh--CCCC-CCCchhhcCH
Confidence 121100 000000 001111 00000 1111 2455677899
Q ss_pred CeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 151 YRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 151 g~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
|+.+++..+++++.++.++|+|||++.||.
T Consensus 160 GekqRv~LAraL~~~P~lLLLDEPt~~LD~ 189 (635)
T PRK11147 160 GWLRKAALGRALVSNPDVLLLDEPTNHLDI 189 (635)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCH
Confidence 999999999999999999999999999998
No 365
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.32 E-value=3.6e-12 Score=125.27 Aligned_cols=169 Identities=22% Similarity=0.245 Sum_probs=127.4
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCC-----------C-eeEEEECCccCccccccc---------cCCCCCCCchhhHHH
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMP-----------S-IAVITMDNYNDSSRIIDG---------NFDDPRLTDYDTLLE 125 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp-----------~-~g~I~~D~y~~~~r~i~~---------~fq~p~~~d~~tl~e 125 (509)
.++|++|+.|+||||++.++....| . .-+|.||||+..++.++. .-..|..||...+.+
T Consensus 120 ~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapwTFD~~lfl~ 199 (323)
T KOG2702|consen 120 ELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPWTFDSNLFLQ 199 (323)
T ss_pred heeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchhhhHHHHHhhcChHHHHhhcCCCcccCHHHHHH
Confidence 3999999999999999999988653 1 245899999876543321 122467789888888
Q ss_pred HHHhhc--cCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeec-----cccCCCCeEEEeecCchHHHHHHHHH
Q 010501 126 NIRGLK--EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLIDLRVSVTGGVHFDLVKRVFR 198 (509)
Q Consensus 126 ~L~~L~--~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d-----Elr~lLDlkIfVd~d~dirLiRRI~R 198 (509)
.++.++ ....+.+|.||+..+.+...........+|+|+||.|+|++ .+..++|.|.|++.+.+.... |+..
T Consensus 200 l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~~-RVa~ 278 (323)
T KOG2702|consen 200 LCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAEE-RVAK 278 (323)
T ss_pred HHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHHH-HHHH
Confidence 888887 45678899999999999886666666789999999999996 466899999999998877654 4555
Q ss_pred HHHHcC--CCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEE
Q 010501 199 DIQRVG--QEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (509)
Q Consensus 199 D~~erG--~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII 237 (509)
+....| .++++...++....+++ .++|+-.+-.+|+++
T Consensus 279 RHl~sGl~~t~~ea~er~d~ND~~N-~~~I~k~~i~~D~iv 318 (323)
T KOG2702|consen 279 RHLQSGLVTTIAEARERFDSNDLLN-GRDIDKHLIKVDNIV 318 (323)
T ss_pred HhhcccccCCHHHHHhhcccccccc-hHHHHhcccchHHHH
Confidence 555677 78888777775555544 345666666666654
No 366
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.31 E-value=1.3e-12 Score=124.24 Aligned_cols=137 Identities=15% Similarity=0.093 Sum_probs=95.5
Q ss_pred cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCc--cccccccCCCCCCCchhhHHHH
Q 010501 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS--SRIIDGNFDDPRLTDYDTLLEN 126 (509)
Q Consensus 49 ~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~--~r~i~~~fq~p~~~d~~tl~e~ 126 (509)
...+++++||.+++|+ +++|.||||||||||++++. +..|.+.+++.... +..+.+++| .+.
T Consensus 7 ~~~~l~~isl~i~~G~---~~~l~G~nG~GKSTLl~~il---~~~G~v~~~~~~~~~~~~~~~~~~q----------~~~ 70 (176)
T cd03238 7 NVHNLQNLDVSIPLNV---LVVVTGVSGSGKSTLVNEGL---YASGKARLISFLPKFSRNKLIFIDQ----------LQF 70 (176)
T ss_pred eeeeecceEEEEcCCC---EEEEECCCCCCHHHHHHHHh---hcCCcEEECCcccccccccEEEEhH----------HHH
Confidence 3568999999999999 99999999999999999884 45777777654211 112333333 223
Q ss_pred HHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEe--cceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcC
Q 010501 127 IRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIE--GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVG 204 (509)
Q Consensus 127 L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVE--Gi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG 204 (509)
+..+. +.....+......|+|+.+++..++.++.+ +.+++.|||...+|. ...+.+.++.+++.++|
T Consensus 71 l~~~~----L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~-------~~~~~l~~~l~~~~~~g 139 (176)
T cd03238 71 LIDVG----LGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQ-------QDINQLLEVIKGLIDLG 139 (176)
T ss_pred HHHcC----CCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCH-------HHHHHHHHHHHHHHhCC
Confidence 32221 111113444567888999999999999999 999999999999998 34555666666665566
Q ss_pred CCHHHHHH
Q 010501 205 QEPEEIIH 212 (509)
Q Consensus 205 ~t~e~Vi~ 212 (509)
.++.-+.|
T Consensus 140 ~tvIivSH 147 (176)
T cd03238 140 NTVILIEH 147 (176)
T ss_pred CEEEEEeC
Confidence 66443333
No 367
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=99.30 E-value=3.5e-13 Score=120.21 Aligned_cols=121 Identities=19% Similarity=0.236 Sum_probs=91.6
Q ss_pred eeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc-------ccccccCCCCCCCchhhHH
Q 010501 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPRLTDYDTLL 124 (509)
Q Consensus 53 Lk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~-------r~i~~~fq~p~~~d~~tl~ 124 (509)
|+++++.+++|+ +++|+|+||||||||+++|++.. |..|.|.+++..... +.++++++++..++..++.
T Consensus 1 L~~v~~~i~~g~---~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~ 77 (137)
T PF00005_consen 1 LKNVSLEIKPGE---IVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVR 77 (137)
T ss_dssp EEEEEEEEETTS---EEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHH
T ss_pred CCceEEEEcCCC---EEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccc
Confidence 689999999999 99999999999999999999999 789999999874332 3567788887776666555
Q ss_pred HHHH-----hhccC---cceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 125 ENIR-----GLKEG---KAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 125 e~L~-----~L~~g---~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
++.. .+... ........+......|+|+.+++..+++++-++.+++.|||.+
T Consensus 78 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 78 ENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 5421 11110 1111223344447788999999999999999999999999864
No 368
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.29 E-value=8.4e-12 Score=118.29 Aligned_cols=153 Identities=19% Similarity=0.246 Sum_probs=111.2
Q ss_pred EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---------------cccccccCC
Q 010501 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------------SRIIDGNFD 113 (509)
Q Consensus 50 ~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---------------~r~i~~~fq 113 (509)
.++++++||.++.|+ .+++-||||||||||+++|.+.+ |+.|.|.+.....+ ++.++|+.|
T Consensus 24 LpV~~~vslsV~aGE---CvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQ 100 (235)
T COG4778 24 LPVLRNVSLSVNAGE---CVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQ 100 (235)
T ss_pred eeeeeceeEEecCcc---EEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHH
Confidence 358999999999999 99999999999999999999998 88888876443111 123577666
Q ss_pred CCCCCchhhHHHHHHh-hc-cC--------------cceecc--ccccCCCCcCCCeeeeecCccEEEEecceeeecccc
Q 010501 114 DPRLTDYDTLLENIRG-LK-EG--------------KAVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~-L~-~g--------------~~i~~P--~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr 175 (509)
.-..++.....+.+.. +. .| .....| .|+-...+.|||++|++.+++-+|+|-..+|+|||+
T Consensus 101 FLRviPRV~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPT 180 (235)
T COG4778 101 FLRVIPRVSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPT 180 (235)
T ss_pred HHHhccCcchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCc
Confidence 5333322222222211 11 11 113334 567777889999999999999999999999999999
Q ss_pred CCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 176 ~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
..+|.+ +....-.+++..+.+|..+..+.|
T Consensus 181 asLDa~-------Nr~vVveli~e~Ka~GaAlvGIFH 210 (235)
T COG4778 181 ASLDAT-------NRAVVVELIREAKARGAALVGIFH 210 (235)
T ss_pred cccccc-------chHHHHHHHHHHHhcCceEEEeec
Confidence 999973 455667788889999987544433
No 369
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.2e-12 Score=122.50 Aligned_cols=155 Identities=16% Similarity=0.186 Sum_probs=116.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc------ccccccC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------RIIDGNF 112 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~------r~i~~~f 112 (509)
.++++...+...++.+++|.+..|+ ++-|.||||||||||+|+|++++ |..|.|.+++-.... +...|.-
T Consensus 5 a~~L~~~R~e~~lf~~L~f~l~~Ge---~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 5 AENLSCERGERTLFSDLSFTLNAGE---ALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred hhhhhhccCcceeecceeEEEcCCC---EEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence 3678888899999999999999999 99999999999999999999999 899999998764432 1233343
Q ss_pred CCCCCCchhhHHHHHHhhcc--Cc--ceec----------cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCC
Q 010501 113 DDPRLTDYDTLLENIRGLKE--GK--AVQV----------PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (509)
Q Consensus 113 q~p~~~d~~tl~e~L~~L~~--g~--~i~~----------P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lL 178 (509)
..+..-..+++.|||.++.. +. .... -.-|-..+..|.|++.+++.++.++---.+.++|||...+
T Consensus 82 H~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taL 161 (209)
T COG4133 82 HQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTAL 161 (209)
T ss_pred ccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCccccc
Confidence 44555667788899888764 11 1111 1223334567888999999999999999999999999999
Q ss_pred CeEEEeecCchHHHHHHHHHHHHHcC
Q 010501 179 DLRVSVTGGVHFDLVKRVFRDIQRVG 204 (509)
Q Consensus 179 DlkIfVd~d~dirLiRRI~RD~~erG 204 (509)
|. ..+.+.-.+......+|
T Consensus 162 Dk-------~g~a~l~~l~~~H~~~G 180 (209)
T COG4133 162 DK-------EGVALLTALMAAHAAQG 180 (209)
T ss_pred CH-------HHHHHHHHHHHHHhcCC
Confidence 97 34445444444444443
No 370
>PRK13409 putative ATPase RIL; Provisional
Probab=99.28 E-value=2e-12 Score=143.47 Aligned_cols=168 Identities=15% Similarity=0.212 Sum_probs=118.2
Q ss_pred eeeeceeeeee----eEEEeCc-EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEE--------
Q 010501 32 DRYEIVPIEDT----LSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT-------- 97 (509)
Q Consensus 32 ~~~~~~~i~~~----lsf~~g~-~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~-------- 97 (509)
..+.+.++|++ +++.||. ..+|++++ .+.+|+ ++||+||||||||||+++|++.+ |+.|.|.
T Consensus 64 ~a~~i~~~p~~~~~~~~~~yg~~~~~L~~l~-~i~~Ge---v~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~ 139 (590)
T PRK13409 64 DAISIVNLPEELEEEPVHRYGVNGFKLYGLP-IPKEGK---VTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEV 139 (590)
T ss_pred ceEEEeeCchhhccCceEEecCCceeEecCC-cCCCCC---EEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHH
Confidence 44677777765 5677775 46999999 899999 99999999999999999999998 7899997
Q ss_pred ---ECCccCc---------cccccccCC----CCCCCchhhHHHHHHhhccCc-------ceec-cccccCCCCcCCCee
Q 010501 98 ---MDNYNDS---------SRIIDGNFD----DPRLTDYDTLLENIRGLKEGK-------AVQV-PIYDFKSSSRIGYRT 153 (509)
Q Consensus 98 ---~D~y~~~---------~r~i~~~fq----~p~~~d~~tl~e~L~~L~~g~-------~i~~-P~yD~~~~~rsgg~~ 153 (509)
++|.... ...+++.+| .|..+. .++.+++....... .... ...+......|+|+.
T Consensus 140 ~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~-~tv~e~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~ 218 (590)
T PRK13409 140 LKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFK-GKVRELLKKVDERGKLDEVVERLGLENILDRDISELSGGEL 218 (590)
T ss_pred HHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhc-chHHHHHHhhhHHHHHHHHHHHcCCchhhcCChhhCCHHHH
Confidence 6654211 011233333 333322 25555553211000 1111 224666678899999
Q ss_pred eeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 154 LEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 154 ~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
+++..+.+++.++.++++|||.+.||. .....+.++.+++.+ |.++.-+.|
T Consensus 219 qrv~ia~al~~~p~lllLDEPts~LD~-------~~~~~l~~~i~~l~~-g~tvIivsH 269 (590)
T PRK13409 219 QRVAIAAALLRDADFYFFDEPTSYLDI-------RQRLNVARLIRELAE-GKYVLVVEH 269 (590)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHHC-CCEEEEEeC
Confidence 999999999999999999999999998 455666777777766 776443333
No 371
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=99.27 E-value=1.9e-12 Score=137.97 Aligned_cols=139 Identities=24% Similarity=0.273 Sum_probs=109.3
Q ss_pred eeeeeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccc
Q 010501 38 PIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (509)
Q Consensus 38 ~i~~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i 108 (509)
-.-.|++|.|. .+++|++|||.+++|+ .|+++||||+||||+++.|.+.+ -.+|.|.+||.+.. +..+
T Consensus 538 i~fsnvtF~Y~p~k~vl~disF~v~pGk---tvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~I 614 (790)
T KOG0056|consen 538 IEFSNVTFAYDPGKPVLSDISFTVQPGK---TVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSI 614 (790)
T ss_pred EEEEEeEEecCCCCceeecceEEecCCc---EEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhc
Confidence 34578899885 5789999999999999 99999999999999999999998 58899999998653 2468
Q ss_pred cccCCCCCCCchhhHHHHHHhhccC-----------------cceecc-ccccCCC----CcCCCeeeeecCccEEEEec
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKEG-----------------KAVQVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~g-----------------~~i~~P-~yD~~~~----~rsgg~~~~v~~a~VLIVEG 166 (509)
+.++|+..+|+ +++..|++..+.+ +-...| .|.-..+ ..|||++|+++.++.|+-.+
T Consensus 615 GVVPQDtvLFN-dTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P 693 (790)
T KOG0056|consen 615 GVVPQDTVLFN-DTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIARTILKAP 693 (790)
T ss_pred CcccCcceeec-ceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHHHhcCC
Confidence 89999876654 4555565543321 112223 2444334 35899999999999999999
Q ss_pred ceeeeccccCCCCe
Q 010501 167 IYALSEKLRPLIDL 180 (509)
Q Consensus 167 i~aL~dElr~lLDl 180 (509)
.++|+||.++.+|.
T Consensus 694 ~iIlLDEATSALDT 707 (790)
T KOG0056|consen 694 SIILLDEATSALDT 707 (790)
T ss_pred cEEEEcchhhhcCC
Confidence 99999999998886
No 372
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.6e-12 Score=140.00 Aligned_cols=138 Identities=17% Similarity=0.142 Sum_probs=107.8
Q ss_pred eeeeeEEEeCcE--EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccc
Q 010501 39 IEDTLSFEKGFF--IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (509)
Q Consensus 39 i~~~lsf~~g~~--~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i 108 (509)
..++++|.|... ++|+++||.+.+|+ -|+|+|+|||||||+++.|.+.+ |..|.|.++|-... +..+
T Consensus 338 ~~~~vsF~y~~~~~~~L~~~~l~l~~GE---kvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i 414 (573)
T COG4987 338 ELRNVSFTYPGQQTKALKNFNLTLAQGE---KVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETI 414 (573)
T ss_pred eeccceeecCCCccchhhccceeecCCC---eEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHH
Confidence 568899988643 59999999999999 99999999999999999999998 89999999996321 2346
Q ss_pred cccCCCCCCCchhhHHHHHHhhccCc----------c-------eecc-----ccccCCCCcCCCeeeeecCccEEEEec
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKEGK----------A-------VQVP-----IYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~g~----------~-------i~~P-----~yD~~~~~rsgg~~~~v~~a~VLIVEG 166 (509)
.+..|.+..|+ .++++|+..-+..- . -..| ..+-.-...|||+.++++.+++++-+-
T Consensus 415 ~vl~Qr~hlF~-~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~da 493 (573)
T COG4987 415 SVLTQRVHLFS-GTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDA 493 (573)
T ss_pred hhhccchHHHH-HHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCC
Confidence 66777776664 57777776544320 0 1112 122223457999999999999999999
Q ss_pred ceeeeccccCCCCe
Q 010501 167 IYALSEKLRPLIDL 180 (509)
Q Consensus 167 i~aL~dElr~lLDl 180 (509)
.++++|||++.+|.
T Consensus 494 pl~lLDEPTegLD~ 507 (573)
T COG4987 494 PLWLLDEPTEGLDP 507 (573)
T ss_pred CeEEecCCcccCCh
Confidence 99999999999997
No 373
>PLN03073 ABC transporter F family; Provisional
Probab=99.24 E-value=9.7e-12 Score=140.88 Aligned_cols=132 Identities=15% Similarity=0.078 Sum_probs=97.2
Q ss_pred eeeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCC
Q 010501 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (509)
Q Consensus 40 ~~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~ 117 (509)
.+++++.++ ...+++++||.+.+|+ +++|+||||||||||+++|++++ |..|.|.+++. ..+++.+|++.
T Consensus 511 ~~~ls~~y~~~~~il~~vsl~i~~Ge---~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~----~~igyv~Q~~~- 582 (718)
T PLN03073 511 FSDASFGYPGGPLLFKNLNFGIDLDS---RIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK----VRMAVFSQHHV- 582 (718)
T ss_pred EEeeEEEeCCCCeeEeccEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc----eeEEEEecccc-
Confidence 467888885 4569999999999999 99999999999999999999998 78899987642 34677777642
Q ss_pred CchhhHHHHHH-hh---ccC----------cceecc--ccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 118 TDYDTLLENIR-GL---KEG----------KAVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 118 ~d~~tl~e~L~-~L---~~g----------~~i~~P--~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
+...+.++.. .+ ..+ ...... ..+......|+|+.+++..+++++.++.++++|||++.+|.
T Consensus 583 -~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~ 660 (718)
T PLN03073 583 -DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDL 660 (718)
T ss_pred -ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 1111111110 00 000 001111 22444567899999999999999999999999999999997
No 374
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.22 E-value=1.4e-11 Score=149.11 Aligned_cols=163 Identities=13% Similarity=0.157 Sum_probs=124.3
Q ss_pred eeeeEEEeC--cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCc-------cccccc
Q 010501 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g--~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~-------~r~i~~ 110 (509)
.++++|.|. ..++|+++||.+++|+ .|||+|+||||||||+++|.++++..|.|.+||.+.. ++.+++
T Consensus 1220 f~nVs~~Y~~~~~~vL~~is~~I~~Ge---kvaIvGrSGsGKSTLl~lL~rl~~~~G~I~IdG~di~~i~~~~lR~~is~ 1296 (1490)
T TIGR01271 1220 VQGLTAKYTEAGRAVLQDLSFSVEGGQ---RVGLLGRTGSGKSTLLSALLRLLSTEGEIQIDGVSWNSVTLQTWRKAFGV 1296 (1490)
T ss_pred EEEEEEEeCCCCcceeeccEEEEcCCC---EEEEECCCCCCHHHHHHHHhhhcCCCcEEEECCEEcccCCHHHHHhceEE
Confidence 478888885 3679999999999999 9999999999999999999999987899999998543 246899
Q ss_pred cCCCCCCCchhhHHHHHHhhccCc---------------ce-ecc-ccccCCC----CcCCCeeeeecCccEEEEeccee
Q 010501 111 NFDDPRLTDYDTLLENIRGLKEGK---------------AV-QVP-IYDFKSS----SRIGYRTLEVPSSRIVIIEGIYA 169 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~g~---------------~i-~~P-~yD~~~~----~rsgg~~~~v~~a~VLIVEGi~a 169 (509)
++|+|..|+ .++++||....... .+ ..| .+|...+ ..|+|++|++..+++++-++.++
T Consensus 1297 IpQdp~LF~-GTIR~NLdp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~IL 1375 (1490)
T TIGR01271 1297 IPQKVFIFS-GTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKIL 1375 (1490)
T ss_pred EeCCCccCc-cCHHHHhCcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEE
Confidence 999999887 58999996442110 00 112 2333222 46889999999999999999999
Q ss_pred eeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHH
Q 010501 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (509)
Q Consensus 170 L~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y 214 (509)
+.||+++.+|. ...+.+.+.+|.. ..+.|+.-|.|+.
T Consensus 1376 lLDEaTS~lD~-------~Te~~I~~~L~~~-~~~~TvI~IaHRl 1412 (1490)
T TIGR01271 1376 LLDEPSAHLDP-------VTLQIIRKTLKQS-FSNCTVILSEHRV 1412 (1490)
T ss_pred EEeCCcccCCH-------HHHHHHHHHHHHH-cCCCEEEEEecCH
Confidence 99999999997 2334555555543 2456666655554
No 375
>PLN03140 ABC transporter G family member; Provisional
Probab=99.22 E-value=5.7e-12 Score=151.93 Aligned_cols=155 Identities=16% Similarity=0.110 Sum_probs=119.4
Q ss_pred cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC---CeeEEEECCccCc----cccccccCCCCCCCchh
Q 010501 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP---SIAVITMDNYNDS----SRIIDGNFDDPRLTDYD 121 (509)
Q Consensus 49 ~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp---~~g~I~~D~y~~~----~r~i~~~fq~p~~~d~~ 121 (509)
...+|+++|+.+++|+ +++|.||||||||||+++|++..+ ..|.|.++|.... .+.+++++|++..++..
T Consensus 892 ~~~iL~~vs~~i~~Ge---l~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~l 968 (1470)
T PLN03140 892 RLQLLREVTGAFRPGV---LTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHSPQV 968 (1470)
T ss_pred CceEeeCcEEEEECCe---EEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCChHHhhhheEEEccccccCCCC
Confidence 3479999999999999 999999999999999999999873 4799999987543 24578999998888889
Q ss_pred hHHHHHHhhc---cCcc----------------eec-cccccCC-----CCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 122 TLLENIRGLK---EGKA----------------VQV-PIYDFKS-----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 122 tl~e~L~~L~---~g~~----------------i~~-P~yD~~~-----~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
++.|++.... .... ... +..|... ...|+|+++++..+..++.++.++++|||+.
T Consensus 969 TV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTs 1048 (1470)
T PLN03140 969 TVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1048 (1470)
T ss_pred cHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 9999986521 1000 011 1122222 3578899999999999999999999999999
Q ss_pred CCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHH
Q 010501 177 LIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (509)
Q Consensus 177 lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~ 213 (509)
.||. .....+.++.|.+.+.|+++.-++|+
T Consensus 1049 gLD~-------~~a~~v~~~L~~l~~~g~tVI~t~Hq 1078 (1470)
T PLN03140 1049 GLDA-------RAAAIVMRTVRNTVDTGRTVVCTIHQ 1078 (1470)
T ss_pred CCCH-------HHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 9997 34556667777777778775555554
No 376
>PLN03140 ABC transporter G family member; Provisional
Probab=99.21 E-value=1.5e-11 Score=148.37 Aligned_cols=148 Identities=13% Similarity=0.137 Sum_probs=113.3
Q ss_pred cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CC---eeEEEECCccCc----cccccccCCCCCCCch
Q 010501 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYNDS----SRIIDGNFDDPRLTDY 120 (509)
Q Consensus 49 ~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~---~g~I~~D~y~~~----~r~i~~~fq~p~~~d~ 120 (509)
.+.+|+++|+.+++|+ +++|.||||||||||+++|++.+ |. .|.|.++|.... ++.+++++|++..++.
T Consensus 177 ~~~IL~~vs~~i~~Ge---~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~ 253 (1470)
T PLN03140 177 KLTILKDASGIIKPSR---MTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGV 253 (1470)
T ss_pred cceeccCCeEEEeCCe---EEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCc
Confidence 3569999999999999 99999999999999999999998 55 899999987432 3457899999888899
Q ss_pred hhHHHHHHhhcc--C--c------ce----------------------------------------eccc-c-----ccC
Q 010501 121 DTLLENIRGLKE--G--K------AV----------------------------------------QVPI-Y-----DFK 144 (509)
Q Consensus 121 ~tl~e~L~~L~~--g--~------~i----------------------------------------~~P~-y-----D~~ 144 (509)
.++.|++..... + . .. .... . |..
T Consensus 254 lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~ 333 (1470)
T PLN03140 254 MTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEM 333 (1470)
T ss_pred CcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcc
Confidence 999999875321 0 0 00 0000 0 112
Q ss_pred CCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCC
Q 010501 145 SSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQE 206 (509)
Q Consensus 145 ~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t 206 (509)
....|+|+++++..+..++-++.+++.|||...||. .....+.++.|.+.. .|.+
T Consensus 334 ~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs-------~t~~~i~~~Lr~la~~~g~T 389 (1470)
T PLN03140 334 IRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDS-------STTYQIVKCLQQIVHLTEAT 389 (1470)
T ss_pred ccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccH-------HHHHHHHHHHHHHHHhcCCE
Confidence 245789999999999999999999999999999997 334445555566644 5665
No 377
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=99.20 E-value=7.9e-12 Score=129.08 Aligned_cols=131 Identities=24% Similarity=0.223 Sum_probs=98.9
Q ss_pred EECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCCCCCCCchhhHHHHHHhhcc--Cc--------
Q 010501 71 VAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK-------- 134 (509)
Q Consensus 71 I~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g~-------- 134 (509)
|+||||||||||+++|++++ |..|.|.++|.... .+.++++||++..++..++.+++..... +.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~ 80 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPR 80 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHHHH
Confidence 57999999999999999998 78999999986432 2458899999999988999999875321 10
Q ss_pred ------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCC
Q 010501 135 ------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQE 206 (509)
Q Consensus 135 ------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t 206 (509)
.... +..+......|+|+.+++..+++++.++.+++.|||...+|. .....++.+.+++.+ .|.+
T Consensus 81 ~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~-------~~~~~l~~~l~~l~~~~g~t 153 (325)
T TIGR01187 81 VLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDK-------KLRDQMQLELKTIQEQLGIT 153 (325)
T ss_pred HHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCH-------HHHHHHHHHHHHHHHhcCCE
Confidence 0111 123445567899999999999999999999999999999997 234455555555543 3555
Q ss_pred HH
Q 010501 207 PE 208 (509)
Q Consensus 207 ~e 208 (509)
+.
T Consensus 154 ii 155 (325)
T TIGR01187 154 FV 155 (325)
T ss_pred EE
Confidence 43
No 378
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.18 E-value=1.7e-11 Score=136.81 Aligned_cols=171 Identities=17% Similarity=0.171 Sum_probs=132.1
Q ss_pred cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC----CeeEEEECCccCcc----ccccccCCCCCCCch
Q 010501 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSS----RIIDGNFDDPRLTDY 120 (509)
Q Consensus 49 ~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp----~~g~I~~D~y~~~~----r~i~~~fq~p~~~d~ 120 (509)
.+.+|++|+..+++|+ +.+|.||||||||||+++|++..+ ..|.|.++|..... +..+|+.|+...++.
T Consensus 42 ~k~iL~~vsg~~~~Ge---l~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~ 118 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPGE---LLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRKISGYVQQDDVLLPT 118 (613)
T ss_pred cceeeeCcEEEEecCe---EEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhheeEEEccccccccc
Confidence 5789999999999999 999999999999999999999983 57999999964332 356899999999999
Q ss_pred hhHHHHHHhh---ccCcc---------e-----eccc---cccCC-----CCcCCCeeeeecCccEEEEecceeeecccc
Q 010501 121 DTLLENIRGL---KEGKA---------V-----QVPI---YDFKS-----SSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (509)
Q Consensus 121 ~tl~e~L~~L---~~g~~---------i-----~~P~---yD~~~-----~~rsgg~~~~v~~a~VLIVEGi~aL~dElr 175 (509)
+|++|.+..- +-... + +... -|-.. ...|+|+++++..+-=++.++..++.|||+
T Consensus 119 LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPT 198 (613)
T KOG0061|consen 119 LTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPT 198 (613)
T ss_pred ccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCC
Confidence 9999998642 21110 0 0000 11111 235788999999999999999999999999
Q ss_pred CCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCC
Q 010501 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPD 229 (509)
Q Consensus 176 ~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~ 229 (509)
..||-. .-..+-++.|++++.|+++.-.+||-...+..++.+.+.-.
T Consensus 199 SGLDS~-------sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs 245 (613)
T KOG0061|consen 199 SGLDSF-------SALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLS 245 (613)
T ss_pred CCcchh-------hHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhc
Confidence 999973 33455667777777799988888887777777777665443
No 379
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.17 E-value=2.2e-11 Score=117.52 Aligned_cols=166 Identities=20% Similarity=0.328 Sum_probs=115.7
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCccccc------cccCCCCCCCchhhHHHHHHhhccCcc---
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRII------DGNFDDPRLTDYDTLLENIRGLKEGKA--- 135 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~r~i------~~~fq~p~~~d~~tl~e~L~~L~~g~~--- 135 (509)
+.+||||.|.+-|||||||+.|...+|.+..|+.|+|+.+...+ -.+|+-+++.|...+.+.+.....+..
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~~~ 82 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHNAP 82 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccccc
Confidence 46899999999999999999999999998999999998775432 124666777888888777766544321
Q ss_pred ------eeccccccCCCCcCCCeeeeecCccEEEEecceeee-ccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHH
Q 010501 136 ------VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (509)
Q Consensus 136 ------i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~-dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e 208 (509)
+....|++...+. ........++|+||.+++. +++...+|.+|++..|.+.+..||- .+-|+.+.
T Consensus 83 ~ar~~~v~~~~~~~~~~~~----q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~----~Rt~y~p~ 154 (225)
T KOG3308|consen 83 EAREHLVSYANFEHYAQQF----QIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRRE----ARTYYPPD 154 (225)
T ss_pred hHhhhhhhhhHHHHHhhhc----CcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhc----ccccCCCC
Confidence 1111122211111 2345667899999999996 8888999999999999877665554 33454444
Q ss_pred HHHHHHHHhhhhHHHHhhcCCCCce--eEEEcC
Q 010501 209 EIIHQISETVYPMYKAFIEPDLQTA--HIKIIN 239 (509)
Q Consensus 209 ~Vi~~y~~~V~P~~~~fIeP~k~~A--DIII~n 239 (509)
+. -++.-.|||+|.++.+-.+..+ |..+.|
T Consensus 155 ~t-gyfd~~~~P~Y~~~~~~~~d~~~h~~~fln 186 (225)
T KOG3308|consen 155 DT-GYFDPVVWPHYEKNFEEARDRSRHDSLFLN 186 (225)
T ss_pred CC-ccccCccchHHHHHHHHHHhhcccceeeec
Confidence 43 4445558999988776544443 555543
No 380
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=99.17 E-value=1.5e-11 Score=148.17 Aligned_cols=148 Identities=13% Similarity=0.028 Sum_probs=113.1
Q ss_pred cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-----CCeeEEEECCccCc------cccccccCCCCCC
Q 010501 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-----PSIAVITMDNYNDS------SRIIDGNFDDPRL 117 (509)
Q Consensus 49 ~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-----p~~g~I~~D~y~~~------~r~i~~~fq~p~~ 117 (509)
.+.+|+++|+.+++|+ +++|.||||||||||+++|++.. |..|.|.++|.... ++.+++++|++..
T Consensus 73 ~~~iL~~vs~~i~~Ge---~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~ 149 (1394)
T TIGR00956 73 TFDILKPMDGLIKPGE---LTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVH 149 (1394)
T ss_pred cceeeeCCEEEEECCE---EEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEecccccc
Confidence 4679999999999999 99999999999999999999985 47899999987431 2347899999888
Q ss_pred CchhhHHHHHHhhcc---------Cc-------c-ee-------c-cccc-----cCCCCcCCCeeeeecCccEEEEecc
Q 010501 118 TDYDTLLENIRGLKE---------GK-------A-VQ-------V-PIYD-----FKSSSRIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 118 ~d~~tl~e~L~~L~~---------g~-------~-i~-------~-P~yD-----~~~~~rsgg~~~~v~~a~VLIVEGi 167 (509)
++..++.|++..... +. . .+ . ...| ......|+|+++++..+..++.++.
T Consensus 150 ~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~ 229 (1394)
T TIGR00956 150 FPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAK 229 (1394)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCC
Confidence 888999999865211 00 0 00 0 0111 1123478999999999999999999
Q ss_pred eeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCC
Q 010501 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQE 206 (509)
Q Consensus 168 ~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t 206 (509)
+++.|||...||. .....+.++.|++.+ .|.+
T Consensus 230 vlllDEPTsgLD~-------~~~~~i~~~L~~la~~~g~t 262 (1394)
T TIGR00956 230 IQCWDNATRGLDS-------ATALEFIRALKTSANILDTT 262 (1394)
T ss_pred EEEEeCCCCCcCH-------HHHHHHHHHHHHHHHhcCCE
Confidence 9999999999997 344455566666664 4766
No 381
>PLN03073 ABC transporter F family; Provisional
Probab=99.15 E-value=2e-11 Score=138.34 Aligned_cols=138 Identities=17% Similarity=0.173 Sum_probs=91.2
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhh----CCCeeEEEECCccC-----c------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF----MPSIAVITMDNYND-----S------ 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~l----lp~~g~I~~D~y~~-----~------ 104 (509)
.+++++.++...+|+++||.+..|+ .+||+|+||||||||+++|++. +|..|.|...+... .
T Consensus 180 i~nls~~y~~~~ll~~isl~i~~Ge---~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~ 256 (718)
T PLN03073 180 MENFSISVGGRDLIVDASVTLAFGR---HYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVL 256 (718)
T ss_pred EceEEEEeCCCEEEECCEEEECCCC---EEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHH
Confidence 4678999988889999999999999 9999999999999999999974 35566665322110 0
Q ss_pred ----------cccccccCCCCCC----------------CchhhHHHHHHh----hc---------------cCcceecc
Q 010501 105 ----------SRIIDGNFDDPRL----------------TDYDTLLENIRG----LK---------------EGKAVQVP 139 (509)
Q Consensus 105 ----------~r~i~~~fq~p~~----------------~d~~tl~e~L~~----L~---------------~g~~i~~P 139 (509)
...+++++|.+.. .+...+.+.+.. +. .+-.+...
T Consensus 257 ~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~~ 336 (718)
T PLN03073 257 NTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPE 336 (718)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHCCCChH
Confidence 0012223322110 011111111111 10 00011001
Q ss_pred ccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 140 IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 140 ~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
..+......|+|+.+++..+++++.++.++|+|||++.||.
T Consensus 337 ~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~ 377 (718)
T PLN03073 337 MQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDL 377 (718)
T ss_pred HHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 12444567899999999999999999999999999999997
No 382
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.14 E-value=2.3e-11 Score=122.35 Aligned_cols=128 Identities=15% Similarity=0.160 Sum_probs=92.3
Q ss_pred CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccc------cc--------cccC
Q 010501 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSR------II--------DGNF 112 (509)
Q Consensus 48 g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r------~i--------~~~f 112 (509)
....++++|||.+++|+ ++|.+|+|||||||++++|.|++ |..|.+.+.|+...++ .+ ...|
T Consensus 35 ~~~~AVqdisf~IP~G~---ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~W 111 (325)
T COG4586 35 RSIEAVQDISFEIPKGE---IVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWW 111 (325)
T ss_pred hhhhhhheeeeecCCCc---EEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeee
Confidence 34558999999999999 99999999999999999999998 9999999999865432 12 3345
Q ss_pred CCCCCCchhhHHHHHHh------------hccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 113 DDPRLTDYDTLLENIRG------------LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 113 q~p~~~d~~tl~e~L~~------------L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
+.| +.+-..+.+.+.. +.+--.++ +...+..+..|-|++.++..+..|+=.+..+|+|||+=.||+
T Consensus 112 dlp-~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~-~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV 189 (325)
T COG4586 112 DLP-ALDSLEVLKLIYEIPDDEFAERLDFLTEILDLE-GFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDV 189 (325)
T ss_pred ech-hhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcch-hhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcch
Confidence 555 3333333333322 11100000 112233356777888889999999999999999999998887
No 383
>PLN03130 ABC transporter C family member; Provisional
Probab=99.14 E-value=2.3e-11 Score=148.23 Aligned_cols=158 Identities=16% Similarity=0.108 Sum_probs=116.0
Q ss_pred eeeeEEEeCc---EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCe-eEEEECCccCccccccccCCC
Q 010501 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI-AVITMDNYNDSSRIIDGNFDD 114 (509)
Q Consensus 40 ~~~lsf~~g~---~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~-g~I~~D~y~~~~r~i~~~fq~ 114 (509)
.++++|.++. .++|+++||.+++|+ +++|+||+|||||||++.|.+.+ |.. |.|.+ +..++++.|+
T Consensus 617 ~~nvsf~y~~~~~~~vL~~inl~i~~Ge---~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l------~~~Iayv~Q~ 687 (1622)
T PLN03130 617 IKNGYFSWDSKAERPTLSNINLDVPVGS---LVAIVGSTGEGKTSLISAMLGELPPRSDASVVI------RGTVAYVPQV 687 (1622)
T ss_pred EEeeEEEccCCCCCceeeceeEEecCCC---EEEEECCCCCCHHHHHHHHHHhhccCCCceEEE------cCeEEEEcCc
Confidence 4677887753 579999999999999 99999999999999999999999 677 78875 3468899999
Q ss_pred CCCCchhhHHHHHHhhccCcc---------------e-eccc-cccCC----CCcCCCeeeeecCccEEEEecceeeecc
Q 010501 115 PRLTDYDTLLENIRGLKEGKA---------------V-QVPI-YDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (509)
Q Consensus 115 p~~~d~~tl~e~L~~L~~g~~---------------i-~~P~-yD~~~----~~rsgg~~~~v~~a~VLIVEGi~aL~dE 173 (509)
|..++ .++++||........ + ..|. ++-.. ...|||+++++..+|++.-+...+++||
T Consensus 688 p~Lfn-gTIreNI~fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDE 766 (1622)
T PLN03130 688 SWIFN-ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDD 766 (1622)
T ss_pred cccCC-CCHHHHHhCCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECC
Confidence 98876 689999876432110 1 1232 12222 2478999999999999999999999999
Q ss_pred ccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHH
Q 010501 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (509)
Q Consensus 174 lr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y 214 (509)
+.+.+|..+ ......++.+... +|+|..-+.|+.
T Consensus 767 ptSALD~~~------~~~I~~~~l~~~l-~~kTvIlVTH~l 800 (1622)
T PLN03130 767 PLSALDAHV------GRQVFDKCIKDEL-RGKTRVLVTNQL 800 (1622)
T ss_pred CccccCHHH------HHHHHHHHhhHHh-cCCEEEEEECCH
Confidence 999999731 1223344444332 466655555543
No 384
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=99.12 E-value=4.3e-11 Score=145.37 Aligned_cols=131 Identities=19% Similarity=0.143 Sum_probs=105.1
Q ss_pred eeeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCC
Q 010501 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR 116 (509)
Q Consensus 40 ~~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~ 116 (509)
.++++|.++. .++|+++++.+++|+ +++|+||||||||||+++|++.+ |..|.|.+++ .+++++|+|.
T Consensus 639 ~~~~~~~~~~~~~~~l~~isl~i~~G~---~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------~i~yv~Q~~~ 709 (1522)
T TIGR00957 639 VHNATFTWARDLPPTLNGITFSIPEGA---LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------SVAYVPQQAW 709 (1522)
T ss_pred EEEeEEEcCCCCCceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC------EEEEEcCCcc
Confidence 4677887753 579999999999999 99999999999999999999998 7889999886 4788999987
Q ss_pred CCchhhHHHHHHhhccCc---------------ce-eccc-----cccCCCCcCCCeeeeecCccEEEEecceeeecccc
Q 010501 117 LTDYDTLLENIRGLKEGK---------------AV-QVPI-----YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (509)
Q Consensus 117 ~~d~~tl~e~L~~L~~g~---------------~i-~~P~-----yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr 175 (509)
.++ .++++|+....... .+ ..|. .+......|||+++++..++++.-++.+++.|||.
T Consensus 710 l~~-~Ti~eNI~~g~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~ 788 (1522)
T TIGR00957 710 IQN-DSLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 788 (1522)
T ss_pred ccC-CcHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 654 68888886532110 00 1121 11223467899999999999999999999999999
Q ss_pred CCCCe
Q 010501 176 PLIDL 180 (509)
Q Consensus 176 ~lLDl 180 (509)
..+|.
T Consensus 789 saLD~ 793 (1522)
T TIGR00957 789 SAVDA 793 (1522)
T ss_pred cccCH
Confidence 99997
No 385
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=99.12 E-value=9.3e-11 Score=116.33 Aligned_cols=122 Identities=19% Similarity=0.183 Sum_probs=85.6
Q ss_pred EeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCCchhhHH
Q 010501 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLL 124 (509)
Q Consensus 46 ~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~d~~tl~ 124 (509)
....+++|++|||++.+|+ .+||+|+||||||||++.|++.+ |+.|.|..++.-.+--.++.-|+. ..+.+
T Consensus 36 ~~~~~~aL~disf~i~~Ge---~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~p-----elTGr 107 (249)
T COG1134 36 KVAEFWALKDISFEIYKGE---RVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDP-----ELTGR 107 (249)
T ss_pred CcceEEEecCceEEEeCCC---EEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCc-----ccchH
Confidence 4456889999999999999 99999999999999999999999 899999998864322223333322 22344
Q ss_pred HHHHhhc----------------------cCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 125 ENIRGLK----------------------EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 125 e~L~~L~----------------------~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
+|+.... -|.-+..|+-.++. |+..+++-+-++-+|+.+++.||..+.-|.
T Consensus 108 eNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSS-----GM~aRLaFsia~~~~pdILllDEvlavGD~ 180 (249)
T COG1134 108 ENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSS-----GMYARLAFSVATHVEPDILLLDEVLAVGDA 180 (249)
T ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccH-----HHHHHHHHhhhhhcCCCEEEEehhhhcCCH
Confidence 4433211 13345556655544 455566667778888888888887776664
No 386
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=99.11 E-value=1.6e-10 Score=114.74 Aligned_cols=134 Identities=16% Similarity=0.085 Sum_probs=93.8
Q ss_pred eeeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------ccccc
Q 010501 39 IEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIID 109 (509)
Q Consensus 39 i~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~ 109 (509)
-.+++++.++.+.+|++|++.+++|+ -..|.||||||||||++.+++.. |..|.+.+-|.... ++.++
T Consensus 33 ~l~~v~v~r~gk~iL~~isW~V~~ge---~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG 109 (257)
T COG1119 33 ELKNVSVRRNGKKILGDLSWQVNPGE---HWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIG 109 (257)
T ss_pred EecceEEEECCEeeccccceeecCCC---cEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhC
Confidence 35889999999999999999999999 99999999999999999999998 56666666554211 11122
Q ss_pred c----------------------------cCC-CCCCCchhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCcc
Q 010501 110 G----------------------------NFD-DPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSR 160 (509)
Q Consensus 110 ~----------------------------~fq-~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~ 160 (509)
+ +|+ ....-+.......+..+.... .-|..-+..|.|+.+++-.++
T Consensus 110 ~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~-----la~r~~~~LS~Ge~rrvLiaR 184 (257)
T COG1119 110 LVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKH-----LADRPFGSLSQGEQRRVLIAR 184 (257)
T ss_pred ccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhh-----hccCchhhcCHhHHHHHHHHH
Confidence 1 111 111111111122222221111 223334567788899999999
Q ss_pred EEEEecceeeeccccCCCCe
Q 010501 161 IVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 161 VLIVEGi~aL~dElr~lLDl 180 (509)
+++-.+.++++|||.+.+|+
T Consensus 185 ALv~~P~LLiLDEP~~GLDl 204 (257)
T COG1119 185 ALVKDPELLILDEPAQGLDL 204 (257)
T ss_pred HHhcCCCEEEecCccccCCh
Confidence 99999999999999999998
No 387
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.11 E-value=3.8e-11 Score=114.28 Aligned_cols=139 Identities=16% Similarity=0.146 Sum_probs=103.7
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------c----
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----------S---- 105 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----------~---- 105 (509)
.+++..||...-.++|||.+.+|+ +.||+|.||||||||++||++.+ |+.|.+..+..... .
T Consensus 10 ~~lsk~Yg~~~gc~~vsF~l~PGe---VLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L 86 (258)
T COG4107 10 SGLSKLYGPGKGCRDVSFDLYPGE---VLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRL 86 (258)
T ss_pred hhhhhhhCCCcCccccceeecCCc---EEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHH
Confidence 456667888888999999999999 99999999999999999999998 88888876553211 0
Q ss_pred --ccccccCCCCCC------Cc---------------hhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEE
Q 010501 106 --RIIDGNFDDPRL------TD---------------YDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 106 --r~i~~~fq~p~~------~d---------------~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VL 162 (509)
..-+++.|+|.- .. +-.+++.-..+.+.-++..-+.|......|+|..+++.+++.+
T Consensus 87 ~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnL 166 (258)
T COG4107 87 LRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNL 166 (258)
T ss_pred hhhccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHh
Confidence 123566677632 01 1112222222333334555567777888899999999999999
Q ss_pred EEecceeeeccccCCCCeEE
Q 010501 163 IIEGIYALSEKLRPLIDLRV 182 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkI 182 (509)
+-.+-+.+-|||+..+|+.|
T Consensus 167 Vt~PrLvfMDEPTGGLDVSV 186 (258)
T COG4107 167 VTRPRLVFMDEPTGGLDVSV 186 (258)
T ss_pred ccCCceEEecCCCCCcchhh
Confidence 99999999999999999853
No 388
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.10 E-value=4.1e-11 Score=117.15 Aligned_cols=155 Identities=15% Similarity=0.132 Sum_probs=113.3
Q ss_pred EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc-------ccccccCCCCC--CCc
Q 010501 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGNFDDPR--LTD 119 (509)
Q Consensus 50 ~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~-------r~i~~~fq~p~--~~d 119 (509)
..+|+.+++.+.+|+ +|.|+|.||||||||++.|++.+ |+.|.|.+|+.+..+ ..++-+||+|. .+.
T Consensus 19 k~~l~~~sL~I~~g~---FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~ 95 (263)
T COG1101 19 KRALNGLSLEIAEGD---FVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAP 95 (263)
T ss_pred HHHHhcCceeecCCc---eEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcc
Confidence 568999999999999 99999999999999999999998 899999999986543 23567999984 578
Q ss_pred hhhHHHHHHhhcc-Ccc------------------------eeccccccCCCCcCCCeeeeecCccEEEEecceeeeccc
Q 010501 120 YDTLLENIRGLKE-GKA------------------------VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (509)
Q Consensus 120 ~~tl~e~L~~L~~-g~~------------------------i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dEl 174 (509)
.+++.||+..... |+. ...+..+-..+-.|||++|-+...-+..-.+.++|+||-
T Consensus 96 ~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEH 175 (263)
T COG1101 96 ELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEH 175 (263)
T ss_pred cccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecch
Confidence 8999999865332 110 111334444556789998888877778888888889999
Q ss_pred cCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHH
Q 010501 175 RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (509)
Q Consensus 175 r~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~ 213 (509)
+..+|++- ..-.+..-.+-+.+...|..-|.|.
T Consensus 176 TAALDPkt------a~~vm~lT~kiV~~~klTtlMVTHn 208 (263)
T COG1101 176 TAALDPKT------AEFVMELTAKIVEEHKLTTLMVTHN 208 (263)
T ss_pred hhcCCcch------HHHHHHHHHHHHHhcCCceEEEecc
Confidence 99999862 2223333334444455554444333
No 389
>PLN03232 ABC transporter C family member; Provisional
Probab=99.10 E-value=3.4e-11 Score=145.96 Aligned_cols=132 Identities=15% Similarity=0.020 Sum_probs=102.2
Q ss_pred eeeeEEEeCc---EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCC
Q 010501 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDP 115 (509)
Q Consensus 40 ~~~lsf~~g~---~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p 115 (509)
.++++|.++. .++|+++||.+++|+ .++|+|++|||||||++.|.+.+ |..|.+. ..+..++++.|+|
T Consensus 617 ~~~vsF~y~~~~~~~vL~~inl~i~~Ge---~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-----~~~~~Iayv~Q~p 688 (1495)
T PLN03232 617 IKNGYFSWDSKTSKPTLSDINLEIPVGS---LVAIVGGTGEGKTSLISAMLGELSHAETSSV-----VIRGSVAYVPQVS 688 (1495)
T ss_pred EEeeEEEcCCCCCCceeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCcccCCCEE-----EecCcEEEEcCcc
Confidence 4677887753 579999999999999 99999999999999999999999 5555332 1234688999999
Q ss_pred CCCchhhHHHHHHhhccCcc----------------eeccc-cccCC----CCcCCCeeeeecCccEEEEecceeeeccc
Q 010501 116 RLTDYDTLLENIRGLKEGKA----------------VQVPI-YDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKL 174 (509)
Q Consensus 116 ~~~d~~tl~e~L~~L~~g~~----------------i~~P~-yD~~~----~~rsgg~~~~v~~a~VLIVEGi~aL~dEl 174 (509)
..++ .++++||.......+ -..|. ++-.. ...|||++++++.+|+++-+...+++||+
T Consensus 689 ~Lf~-gTIreNI~fg~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEp 767 (1495)
T PLN03232 689 WIFN-ATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDP 767 (1495)
T ss_pred cccc-ccHHHHhhcCCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 8876 689999875432110 11232 22222 24789999999999999999999999999
Q ss_pred cCCCCe
Q 010501 175 RPLIDL 180 (509)
Q Consensus 175 r~lLDl 180 (509)
.+.+|.
T Consensus 768 tSaLD~ 773 (1495)
T PLN03232 768 LSALDA 773 (1495)
T ss_pred ccccCH
Confidence 999997
No 390
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=99.10 E-value=1.3e-10 Score=134.67 Aligned_cols=161 Identities=13% Similarity=0.032 Sum_probs=132.7
Q ss_pred eceeeeeeeEEEeCcEE-EeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------
Q 010501 35 EIVPIEDTLSFEKGFFI-VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------- 104 (509)
Q Consensus 35 ~~~~i~~~lsf~~g~~~-iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------- 104 (509)
......++++..++.+. +++++++.+++|+ +.|+.|+|||||||+.++|.|.. |+.|.+.+.|+...
T Consensus 562 ~~~~~~~~L~k~y~~~~~Av~~ls~~V~~ge---cfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~ 638 (885)
T KOG0059|consen 562 SSALVLNNLSKVYGGKDGAVRGLSFAVPPGE---CFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQV 638 (885)
T ss_pred cceEEEcceeeeecchhhhhcceEEEecCCc---eEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhh
Confidence 35667788888888776 9999999999999 99999999999999999999998 79999999888543
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhccCcc-----------------eeccccccCCCCcCCCeeeeecCccEEEEecc
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKEGKA-----------------VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~-----------------i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi 167 (509)
.+.+||.+|+...++.++.+|++..+..-+. ...|.-+...+..++|.+.++.-+-.++..+.
T Consensus 639 ~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~ 718 (885)
T KOG0059|consen 639 RKQLGYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIALIGDPS 718 (885)
T ss_pred hhhcccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHHHhcCCC
Confidence 2358999999999999999999987553111 11233444567788999999999999999999
Q ss_pred eeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCC
Q 010501 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (509)
Q Consensus 168 ~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~ 205 (509)
.+++|||..++|+ ...|.++.+.+++++.|+
T Consensus 719 vi~LDEPstGmDP-------~arr~lW~ii~~~~k~g~ 749 (885)
T KOG0059|consen 719 VILLDEPSTGLDP-------KARRHLWDIIARLRKNGK 749 (885)
T ss_pred EEEecCCCCCCCH-------HHHHHHHHHHHHHHhcCC
Confidence 9999999999998 467778888888877663
No 391
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=5.4e-11 Score=125.36 Aligned_cols=165 Identities=19% Similarity=0.222 Sum_probs=125.8
Q ss_pred eeeeeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccc
Q 010501 38 PIEDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (509)
Q Consensus 38 ~i~~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i 108 (509)
..-.+++|.+. .+++|+++++.++.|+ .++|+|+||+||||+++.|.+++ +..|.|.+|+++.. ++.+
T Consensus 263 v~F~~V~F~y~~~r~iL~~isf~i~~g~---tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aI 339 (497)
T COG5265 263 VAFINVSFAYDPRRPILNGISFTIPLGK---TVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAI 339 (497)
T ss_pred EEEEEEEeeccccchhhcCccccccCcc---EEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHh
Confidence 34467788764 5789999999999999 99999999999999999999999 89999999999643 2468
Q ss_pred cccCCCCCCCchhhHHHHHHhhccCc----------------c-eecc-ccccCCCC----cCCCeeeeecCccEEEEec
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKEGK----------------A-VQVP-IYDFKSSS----RIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~g~----------------~-i~~P-~yD~~~~~----rsgg~~~~v~~a~VLIVEG 166 (509)
+.++|+-.+| .+++..|+...+..- - -..| .||-..++ .++|++|+++.++.|+-++
T Consensus 340 g~VPQDtvLF-NDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p 418 (497)
T COG5265 340 GIVPQDTVLF-NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNP 418 (497)
T ss_pred CcCcccceeh-hhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCC
Confidence 9999987655 467777776544210 0 1123 35555554 4899999999999999999
Q ss_pred ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHH
Q 010501 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (509)
Q Consensus 167 i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y 214 (509)
..++.||-++.||.+ -.+.+.+-.|++. +|+|..-+.|+.
T Consensus 419 ~il~~deatsaldt~-------te~~iq~~l~~~~-~~rttlviahrl 458 (497)
T COG5265 419 PILILDEATSALDTH-------TEQAIQAALREVS-AGRTTLVIAHRL 458 (497)
T ss_pred CEEEEehhhhHhhhh-------HHHHHHHHHHHHh-CCCeEEEEeehh
Confidence 999999999999873 3455556566654 677765555554
No 392
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.07 E-value=6e-10 Score=121.72 Aligned_cols=188 Identities=18% Similarity=0.194 Sum_probs=121.9
Q ss_pred eEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCcc----ccccccCCCCCCC
Q 010501 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS----RIIDGNFDDPRLT 118 (509)
Q Consensus 43 lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~----r~i~~~fq~p~~~ 118 (509)
+....|...+++|+.+.. .+. +|+|.|||||||||+++.|+..+ ....+..|.++..- ...+++++++..+
T Consensus 265 ~A~~~g~~RLIDN~~~~~-~~~---ii~i~G~sgsGKst~a~~la~~l-~~~~~d~g~~YR~~a~~~l~~~~~~~~~~~l 339 (512)
T PRK13477 265 IAVRCGSTRLIDNVFLMK-RQP---IIAIDGPAGAGKSTVTRAVAKKL-GLLYLDTGAMYRAVTWLVLQEGIDPQDEEAL 339 (512)
T ss_pred EEEEeCCeEEEeeeEecc-CCc---EEEEECCCCCCHHHHHHHHHHHc-CCeEecCCceehHHHHHHHHcCcCCcCHHHH
Confidence 455678889999998866 555 99999999999999999999988 34455555554321 1123344443222
Q ss_pred chhhHHHHHHhhc-----cCcceeccccccCCCCcCCC--------------------eeeeecCccEEEEecceeeecc
Q 010501 119 DYDTLLENIRGLK-----EGKAVQVPIYDFKSSSRIGY--------------------RTLEVPSSRIVIIEGIYALSEK 173 (509)
Q Consensus 119 d~~tl~e~L~~L~-----~g~~i~~P~yD~~~~~rsgg--------------------~~~~v~~a~VLIVEGi~aL~dE 173 (509)
..+.+++.... .+..+..|.||...+-|+.. ..+......=+|+||--+..-
T Consensus 340 --~~l~~~l~~~~~~~~~~~~~i~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigtv- 416 (512)
T PRK13477 340 --AELLSDLKIELKPSSGSPQRVWINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGTH- 416 (512)
T ss_pred --HHHHhcCCeeeccCCCCCceEEeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEcccceeE-
Confidence 22333333322 22357778888776655431 011122223488999765432
Q ss_pred ccCCCCeEEEeecCchHHHHHHHHHHHHHcCC---CHHHHHHHHHHhhhhHHHHhhcCCCCc-eeEEEcC
Q 010501 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ---EPEEIIHQISETVYPMYKAFIEPDLQT-AHIKIIN 239 (509)
Q Consensus 174 lr~lLDlkIfVd~d~dirLiRRI~RD~~erG~---t~e~Vi~~y~~~V~P~~~~fIeP~k~~-ADIII~n 239 (509)
+.+..|+|||++++.+.+..||..+ ...||. +.+.+.+.+.++..-...+.+.|-... ++++|+.
T Consensus 417 V~P~AdlKIfL~As~evRa~RR~~~-l~~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDT 485 (512)
T PRK13477 417 VFPDAELKIFLTASVEERARRRALD-LQAQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELIT 485 (512)
T ss_pred EcCCCCEEEEEECCHHHHHHHHHhh-hhhCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEEC
Confidence 2234699999999999877766644 446664 478888888888777777888887766 5677753
No 393
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.07 E-value=1e-10 Score=128.28 Aligned_cols=139 Identities=12% Similarity=0.090 Sum_probs=99.1
Q ss_pred eceeeeeeeEEEeCc-EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccC
Q 010501 35 EIVPIEDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNF 112 (509)
Q Consensus 35 ~~~~i~~~lsf~~g~-~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~f 112 (509)
..+...+++++.++. +.+++++||.+..|+ .|||+||||+|||||++.|++.+ |..|.|....- -.++|..
T Consensus 319 ~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~---riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~----v~igyf~ 391 (530)
T COG0488 319 KLVLEFENVSKGYDGGRLLLKDLSFRIDRGD---RIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET----VKIGYFD 391 (530)
T ss_pred CeeEEEeccccccCCCceeecCceEEecCCC---EEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc----eEEEEEE
Confidence 344456788888855 689999999999999 99999999999999999999988 67788876532 1234444
Q ss_pred CCCCC-CchhhHHHHHHhhccCc-c-----------eeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCC
Q 010501 113 DDPRL-TDYDTLLENIRGLKEGK-A-----------VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (509)
Q Consensus 113 q~p~~-~d~~tl~e~L~~L~~g~-~-----------i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLD 179 (509)
|+-.. .+..++.+.+....... . ..-..........|||++.++..+.++.-.+.++++|||++.||
T Consensus 392 Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLD 471 (530)
T COG0488 392 QHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLD 471 (530)
T ss_pred ehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCC
Confidence 44322 12224444544433111 0 00011122235689999999999999999999999999999999
Q ss_pred e
Q 010501 180 L 180 (509)
Q Consensus 180 l 180 (509)
+
T Consensus 472 i 472 (530)
T COG0488 472 I 472 (530)
T ss_pred H
Confidence 7
No 394
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=99.04 E-value=1e-10 Score=141.85 Aligned_cols=121 Identities=19% Similarity=0.182 Sum_probs=99.2
Q ss_pred EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCCchhhHHHHHH
Q 010501 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIR 128 (509)
Q Consensus 50 ~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~d~~tl~e~L~ 128 (509)
..+|++++|.+++|+ +++|+||||||||||+++|++.+ |..|.|.+++ .++|++|+|..++ .++++|+.
T Consensus 439 ~~~l~~i~l~i~~G~---~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g------~iayv~Q~~~l~~-~Ti~eNI~ 508 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQ---LLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG------RISFSPQTSWIMP-GTIKDNII 508 (1490)
T ss_pred CcceeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC------EEEEEeCCCccCC-ccHHHHHH
Confidence 568999999999999 99999999999999999999998 7899999887 4789999998877 48999887
Q ss_pred hhccCcc---------------e-ecccccc-----CCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 129 GLKEGKA---------------V-QVPIYDF-----KSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 129 ~L~~g~~---------------i-~~P~yD~-----~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
+...... + ..|.-|. .....|+|+++++..++++.-++.++|+|||...+|.
T Consensus 509 ~g~~~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~ 581 (1490)
T TIGR01271 509 FGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581 (1490)
T ss_pred hccccchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 5321100 0 0122121 2346789999999999999999999999999999997
No 395
>PTZ00243 ABC transporter; Provisional
Probab=99.00 E-value=2.3e-10 Score=139.27 Aligned_cols=125 Identities=21% Similarity=0.176 Sum_probs=99.8
Q ss_pred EeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCCchhhHH
Q 010501 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLL 124 (509)
Q Consensus 46 ~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~d~~tl~ 124 (509)
..+...+|++++|.+++|+ +++|+||||||||||+++|++.+ |..|.|.+. +.+++++|+|..++ .++.
T Consensus 669 ~~~~~~iL~~isl~i~~G~---~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~------~~i~yv~Q~~~l~~-~Tv~ 738 (1560)
T PTZ00243 669 ELEPKVLLRDVSVSVPRGK---LTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE------RSIAYVPQQAWIMN-ATVR 738 (1560)
T ss_pred ccCCceeEeeeEEEECCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC------CeEEEEeCCCccCC-CcHH
Confidence 3355679999999999999 99999999999999999999998 788988763 45889999998764 5888
Q ss_pred HHHHhhccCcc------e----------ecc-----ccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 125 ENIRGLKEGKA------V----------QVP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 125 e~L~~L~~g~~------i----------~~P-----~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
+|+........ + ..| ..+......|+|+++++..+++++.++.++++|||...+|.
T Consensus 739 enI~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~ 815 (1560)
T PTZ00243 739 GNILFFDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDA 815 (1560)
T ss_pred HHHHcCChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 88865321100 0 011 11233456889999999999999999999999999999997
No 396
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.96 E-value=5.9e-09 Score=93.37 Aligned_cols=143 Identities=15% Similarity=0.197 Sum_probs=89.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCccccccccCCCCCCCchhhHHHHHHhhccCcceeccccccCCCC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS 147 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~ 147 (509)
+|.|+|++||||||+++.|+..+ +...+..|+...... ....... .....+.+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~-~~~~~~~~~i~~e~~-~~~~~~~---~~~~~i~~~l~~~~~--------------- 60 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKL-GLPYLDTGGIRTEEV-GKLASEV---AAIPEVRKALDERQR--------------- 60 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh-CCceeccccCCHHHH-HHHHHHh---cccHhHHHHHHHHHH---------------
Confidence 58999999999999999999987 223444442211000 0000000 000111111111100
Q ss_pred cCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCHHHHHHHHHHhhhhHHHHhh
Q 010501 148 RIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFI 226 (509)
Q Consensus 148 rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e~Vi~~y~~~V~P~~~~fI 226 (509)
.+....-+|+||.++-.- +.+..|+.||++++.+.+..|...|+... +|.+.+++.+++.....+.+..|.
T Consensus 61 -------~~~~~~~~Vidg~~~~~~-~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 132 (147)
T cd02020 61 -------ELAKKPGIVLEGRDIGTV-VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYV 132 (147)
T ss_pred -------HHhhCCCEEEEeeeeeeE-EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhhhccc
Confidence 011123467788875332 24568999999999999887777777442 377999999999999999999999
Q ss_pred cCCCCce-eEEEc
Q 010501 227 EPDLQTA-HIKII 238 (509)
Q Consensus 227 eP~k~~A-DIII~ 238 (509)
.|....+ |++|.
T Consensus 133 ~~~~~~~~dl~i~ 145 (147)
T cd02020 133 APLKLAEDAIVID 145 (147)
T ss_pred ccccCCCCcEEEe
Confidence 9986444 57764
No 397
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=98.90 E-value=1.1e-09 Score=103.48 Aligned_cols=160 Identities=19% Similarity=0.234 Sum_probs=98.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCc-----c---cc----ccc-cCCCCCCCchhhHHHHHHh----h
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-----S---RI----IDG-NFDDPRLTDYDTLLENIRG----L 130 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~-----~---r~----i~~-~fq~p~~~d~~tl~e~L~~----L 130 (509)
+|||+|+.||||||+++.|.. + +...|..|.+... . .. .+. ++.....+|...+.+.+-. +
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~-g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~~ 78 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-L-GIPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPEKR 78 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-C-CCCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHHHH
Confidence 589999999999999999988 4 5567777776211 0 00 111 1111233444444433321 1
Q ss_pred ccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHH
Q 010501 131 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (509)
Q Consensus 131 ~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~V 210 (509)
..-..+..|.+......... ......++++|+.+++...+...+|..++|++|.+.++.|.+.|| |.+.+++
T Consensus 79 ~~l~~i~hp~i~~~~~~~~~----~~~~~~~vive~plL~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd----~~s~~~~ 150 (179)
T cd02022 79 KKLEAITHPLIRKEIEEQLA----EARKEKVVVLDIPLLFETGLEKLVDRVIVVDAPPEIQIERLMKRD----GLSEEEA 150 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HccCCCEEEEEehHhhcCCcHHhCCeEEEEECCHHHHHHHHHHcC----CCCHHHH
Confidence 11123444433222111100 011236899999998887788899999999999988776666554 8888888
Q ss_pred HHHHHHhhhhHHHHhhcCCCCceeEEEcCCCCC
Q 010501 211 IHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (509)
Q Consensus 211 i~~y~~~V~P~~~~fIeP~k~~ADIII~n~~~p 243 (509)
...+....... +.+..||++|.|+.+.
T Consensus 151 ~~r~~~Q~~~~------~~~~~aD~vI~N~~~~ 177 (179)
T cd02022 151 EARIASQMPLE------EKRARADFVIDNSGSL 177 (179)
T ss_pred HHHHHhcCCHH------HHHHhCCEEEECcCCC
Confidence 88876543322 3457899999876643
No 398
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=98.90 E-value=2.4e-09 Score=102.22 Aligned_cols=163 Identities=13% Similarity=0.126 Sum_probs=104.2
Q ss_pred eeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCcc-------ccccccCCCCCCCchhhHH-
Q 010501 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-------RIIDGNFDDPRLTDYDTLL- 124 (509)
Q Consensus 53 Lk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~-------r~i~~~fq~p~~~d~~tl~- 124 (509)
|-.+|..+..|+ ++-++||||||||||+..|++++|.+|.|.++|..... +.-+|..|.......+.+.
T Consensus 15 L~plS~qv~aGe---~~HliGPNGaGKSTLLA~lAGm~~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~ 91 (248)
T COG4138 15 LGPLSGEVRAGE---ILHLVGPNGAGKSTLLARMAGMTSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWH 91 (248)
T ss_pred ccccccccccce---EEEEECCCCccHHHHHHHHhCCCCCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhh
Confidence 456677889999 99999999999999999999999999999999974321 2223333222222222222
Q ss_pred ------------HHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEE-------ecceeeeccccCCCCeEEEee
Q 010501 125 ------------ENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVII-------EGIYALSEKLRPLIDLRVSVT 185 (509)
Q Consensus 125 ------------e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIV-------EGi~aL~dElr~lLDlkIfVd 185 (509)
..+..+...-.+ -...-++.+..+||+-+++..+.+++- .|-++++|||.+.+|+
T Consensus 92 YL~L~qP~~~~a~~i~~i~~~L~l-~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDv----- 165 (248)
T COG4138 92 YLTLHQPDKTRTELLNDVAGALAL-DDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDV----- 165 (248)
T ss_pred hhhhcCchHHHHHHHHHHHhhhcc-cchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhH-----
Confidence 222222211000 112334556789999888887766553 5678888999999998
Q ss_pred cCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhh
Q 010501 186 GGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFI 226 (509)
Q Consensus 186 ~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fI 226 (509)
.....+.|+.-.+...|.++.-.-|...++.+-..+.|.
T Consensus 166 --AQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wL 204 (248)
T COG4138 166 --AQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWL 204 (248)
T ss_pred --HHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHH
Confidence 344566677777777787754444444444444444444
No 399
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=98.89 E-value=1.2e-08 Score=98.42 Aligned_cols=181 Identities=19% Similarity=0.328 Sum_probs=135.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC----CCeeEEEECCccCccc-------------cccccCCCCCCCchhhHHHHHHhh
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNYNDSSR-------------IIDGNFDDPRLTDYDTLLENIRGL 130 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll----p~~g~I~~D~y~~~~r-------------~i~~~fq~p~~~d~~tl~e~L~~L 130 (509)
+|+|.|.||+|-||...+.-.++ -....|.-|.|+...+ ...+.+-.|.+.|+..+++.+...
T Consensus 7 iIavTGSSGAGTTTts~aFrKiF~~~~I~aa~iEGDsFHR~tRpeMd~~Irkar~~GrhisyFgpeANdf~~LE~~f~eY 86 (289)
T COG3954 7 VIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTFIEY 86 (289)
T ss_pred eEEEecCCCCCcccHHHHHHHHHHhcCccHhhhccccccccCchhHHHHHHHHHHcCCcceecCccccchHHHHHHHHHh
Confidence 99999999999999876665554 2556777788754221 123344467888999999998887
Q ss_pred ccCcceeccc----------cccCCCCcCCCeeeeecCccEEEEecceeee--c--cccCCCCeEEEeecCchHHHHHHH
Q 010501 131 KEGKAVQVPI----------YDFKSSSRIGYRTLEVPSSRIVIIEGIYALS--E--KLRPLIDLRVSVTGGVHFDLVKRV 196 (509)
Q Consensus 131 ~~g~~i~~P~----------yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~--d--Elr~lLDlkIfVd~d~dirLiRRI 196 (509)
.......... |+...+...+|+.. .++.++|..||.+... + .+....|++|.|..-....++.++
T Consensus 87 g~~G~Gr~R~YlHt~dEAvp~nq~PGTFTpW~~l-pe~sDvLFYEGLHGgvVt~~~nvAqHvDlliGvVPivNLEWIQK~ 165 (289)
T COG3954 87 GQSGKGRSRKYLHTYDEAVPWNQVPGTFTPWQPL-PEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEWIQKL 165 (289)
T ss_pred cccCCcchhhhhhchhhcCccCCCCCCCCCcccC-CCccceeeeeccccceecCcccHhhhhceeeeeeeEeeHHHHHHH
Confidence 6544333333 33334445555443 3568999999999865 2 577889999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEE-----cCCCCCCcCCCCc
Q 010501 197 FRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI-----INKFNPFTGFQNP 250 (509)
Q Consensus 197 ~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII-----~n~~~p~~g~~~~ 250 (509)
.||..+||.+.|.|++.... ..+.|..||.|+....||-+ .+..|||...-.|
T Consensus 166 ~RDt~~RGhSrEAVmDsivR-sMdDYinyItPQFSrThINFQRVPtVDTSNPf~Ak~IP 223 (289)
T COG3954 166 IRDTSERGHSREAVMDSVVR-SMDDYINYITPQFSRTHINFQRVPTVDTSNPFAAKGIP 223 (289)
T ss_pred HhcccccCccHHHHHHHHHH-hhhhHHhhcCccccccccceeecccccCCCchhhccCC
Confidence 99999999999999998753 47889999999999998875 4677887655444
No 400
>COG4240 Predicted kinase [General function prediction only]
Probab=98.86 E-value=3.1e-08 Score=97.77 Aligned_cols=165 Identities=19% Similarity=0.289 Sum_probs=106.7
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHhhC---C--CeeEEEECCccCccc-c--ccc--c-----CCCCCCCchhhHHHHH
Q 010501 63 NHGIILVGVAGPSGAGKTVFTEKVLNFM---P--SIAVITMDNYNDSSR-I--IDG--N-----FDDPRLTDYDTLLENI 127 (509)
Q Consensus 63 Ge~~iIIgI~GpSGSGKTTLar~L~~ll---p--~~g~I~~D~y~~~~r-~--i~~--~-----fq~p~~~d~~tl~e~L 127 (509)
-++|+|+||+||-||||||++-.|..++ . ..+.+++|+++.+.. + +.- + -.-|..+|...+.+.|
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlthadrl~La~q~npllq~RGlpGTHD~tlglnVL 126 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVNPLLQTRGLPGTHDPTLGLNVL 126 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcchHHHHHHHHhcCchhcccCCCCCCchHHHHHHH
Confidence 3459999999999999999999988877 2 678999999987541 1 110 1 1236778888888888
Q ss_pred HhhccCc-ceeccccccCCC----CcCCCeee-eecCccEEEEecceeee-c--------cccCC---------------
Q 010501 128 RGLKEGK-AVQVPIYDFKSS----SRIGYRTL-EVPSSRIVIIEGIYALS-E--------KLRPL--------------- 177 (509)
Q Consensus 128 ~~L~~g~-~i~~P~yD~~~~----~rsgg~~~-~v~~a~VLIVEGi~aL~-d--------Elr~l--------------- 177 (509)
..+.+++ ++.+|.||.+.+ +|.+ +.+ ...+.+++|+||.++.. + ++.++
T Consensus 127 nai~~g~~~V~lPrfDKS~f~gagDR~p-~~q~ik~~vdivIlEGWfvGfrPidp~ll~~p~n~l~~~ed~a~~~dvN~k 205 (300)
T COG4240 127 NAIARGGPTVPLPRFDKSAFAGAGDRAP-QTQWIKFEVDIVILEGWFVGFRPIDPELLAAPVNALEAAEDGAWRADVNDK 205 (300)
T ss_pred HHHhcCCCCcccccccchhccCCCCCCC-cccceecceeEEEEeeeeeecccCCHHHhCCCCccchhhccccHHHHHHhh
Confidence 8877765 568899999654 4433 222 23448999999999864 2 11111
Q ss_pred ----------CCeEEEeecC-chHHHHHHHHHHHH-----HcCCCHHHHHHHHHHhhhhHHHHhhcCC
Q 010501 178 ----------IDLRVSVTGG-VHFDLVKRVFRDIQ-----RVGQEPEEIIHQISETVYPMYKAFIEPD 229 (509)
Q Consensus 178 ----------LDlkIfVd~d-~dirLiRRI~RD~~-----erG~t~e~Vi~~y~~~V~P~~~~fIeP~ 229 (509)
+|-.|-++++ ...-+.+|....++ ..|++-+++.+ +-++.+|.|+-|+.+-
T Consensus 206 La~Y~pL~~rIdsLillta~din~vy~WRlQqEhkliAr~~kgmsdeqv~e-fvn~ymrsl~lylq~l 272 (300)
T COG4240 206 LAPYRPLFDRIDSLILLTAPDINTVYAWRLQQEHKLIARLAKGMSDEQVSE-FVNAYMRSLELYLQRL 272 (300)
T ss_pred hhhhHHHHHHhhheeEecccchHHHHHHHHHHHHHHHHHHhccCcHHHHHH-HHHHHHHHHHHHHHHH
Confidence 1223334433 22334455554443 35777777644 5566678887776543
No 401
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.82 E-value=2.1e-09 Score=127.49 Aligned_cols=144 Identities=17% Similarity=0.237 Sum_probs=106.3
Q ss_pred EEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccccccCCCCC
Q 010501 45 FEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNFDDPR 116 (509)
Q Consensus 45 f~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~~fq~p~ 116 (509)
+..+..++|++||+.+++|+ -|||+|.+|||||||+.+|-++. |..|.|.+||.+.. +++++.++|+|.
T Consensus 1148 Yrp~lp~VLk~is~~I~p~e---KVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPv 1224 (1381)
T KOG0054|consen 1148 YRPNLPLVLKGISFTIKPGE---KVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPV 1224 (1381)
T ss_pred eCCCCcchhcCceEEEcCCc---eEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCc
Confidence 34455689999999999999 99999999999999999999998 68899999998543 457888999997
Q ss_pred CCchhhHHHHHHhhccC---------------cce-eccc-cccCC----CCcCCCeeeeecCccEEEEecceeeecccc
Q 010501 117 LTDYDTLLENIRGLKEG---------------KAV-QVPI-YDFKS----SSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (509)
Q Consensus 117 ~~d~~tl~e~L~~L~~g---------------~~i-~~P~-yD~~~----~~rsgg~~~~v~~a~VLIVEGi~aL~dElr 175 (509)
+|. -+++.||..+.+. ..+ ..|. .|... ...|-|++|-+..+|+++=..-.++.||.+
T Consensus 1225 LFs-GTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEAT 1303 (1381)
T KOG0054|consen 1225 LFS-GTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEAT 1303 (1381)
T ss_pred eec-CccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEeccc
Confidence 753 3455555433321 111 2221 22221 234567888899999999999999999999
Q ss_pred CCCCeEEEeecCchHHHHHHHHHH
Q 010501 176 PLIDLRVSVTGGVHFDLVKRVFRD 199 (509)
Q Consensus 176 ~lLDlkIfVd~d~dirLiRRI~RD 199 (509)
+.+|.. --.++++.+|.
T Consensus 1304 AsVD~~-------TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1304 ASVDPE-------TDALIQKTIRE 1320 (1381)
T ss_pred ccCChH-------HHHHHHHHHHH
Confidence 999872 23466666655
No 402
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.79 E-value=3.6e-09 Score=103.85 Aligned_cols=65 Identities=6% Similarity=0.006 Sum_probs=49.0
Q ss_pred cccCCCCcCCCeeeeecCccEEEEec--ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 141 YDFKSSSRIGYRTLEVPSSRIVIIEG--IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 141 yD~~~~~rsgg~~~~v~~a~VLIVEG--i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
.+...+..|+|+.+++..+++++.++ .+++.|||...+|. ...+.+.++.+++.++|.++.-+.|
T Consensus 131 ~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~-------~~~~~l~~~l~~~~~~g~tii~itH 197 (226)
T cd03270 131 LSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHP-------RDNDRLIETLKRLRDLGNTVLVVEH 197 (226)
T ss_pred ccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCH-------HHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 45566788999999999999999997 49999999999998 3455566666666666766444333
No 403
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=98.77 E-value=1.3e-09 Score=105.06 Aligned_cols=119 Identities=11% Similarity=0.089 Sum_probs=76.9
Q ss_pred eeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCe----------eEEEECCccC----ccccccccCCCCCCCc
Q 010501 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSI----------AVITMDNYND----SSRIIDGNFDDPRLTD 119 (509)
Q Consensus 54 k~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~----------g~I~~D~y~~----~~r~i~~~fq~p~~~d 119 (509)
+++++.+.+ + +++|+||||||||||+++|.++++.. +.+.+++... ..+.++++||+|..+.
T Consensus 14 ~~~~l~~~~-g---~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~ 89 (197)
T cd03278 14 DKTTIPFPP-G---LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRY 89 (197)
T ss_pred CCeeeecCC-C---cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCce
Confidence 456666665 3 88999999999999999999887321 2344444321 1245788999987651
Q ss_pred hhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEE----ecceeeeccccCCCCe
Q 010501 120 YDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVII----EGIYALSEKLRPLIDL 180 (509)
Q Consensus 120 ~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIV----EGi~aL~dElr~lLDl 180 (509)
...-.+.+..+.+. ....+...+..|+|+.+++..+.+++. ++.+++.|||...+|.
T Consensus 90 ~~~~~~~~~~~l~~----~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~ 150 (197)
T cd03278 90 SIISQGDVSEIIEA----PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDD 150 (197)
T ss_pred eEEehhhHHHHHhC----CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCH
Confidence 11011222222111 112344456788899999998887753 4478889999999997
No 404
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=98.75 E-value=1.3e-07 Score=91.92 Aligned_cols=165 Identities=23% Similarity=0.310 Sum_probs=107.8
Q ss_pred ecCCc-cEEEEEECCCCCcHHHHHHHHHhhC-------CCeeEEEECCccCcccc-ccc---c--------CCCCCCCch
Q 010501 61 QKNHG-IILVGVAGPSGAGKTVFTEKVLNFM-------PSIAVITMDNYNDSSRI-IDG---N--------FDDPRLTDY 120 (509)
Q Consensus 61 ~~Ge~-~iIIgI~GpSGSGKTTLar~L~~ll-------p~~g~I~~D~y~~~~r~-i~~---~--------fq~p~~~d~ 120 (509)
+.|.. |++||+.||-|||||||+-+|-..+ ..++.+++|+|+.+... ... + -..+..+|.
T Consensus 25 ~~G~~~Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFYLThe~Q~eL~k~npnN~Llq~RGlaGtHD~ 104 (282)
T KOG2878|consen 25 KDGDDVPLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFYLTHEGQAELRKKNPNNALLQYRGLAGTHDL 104 (282)
T ss_pred cCCCcCcEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEecceeeechhHHHHHhhCCCChhhccCCCCCcccH
Confidence 44544 9999999999999999998876554 26899999999765421 100 1 123556888
Q ss_pred hhHHHHHHhhcc----CcceeccccccCCC----CcCC-CeeeeecCccEEEEecceeeeccc-------cCC-------
Q 010501 121 DTLLENIRGLKE----GKAVQVPIYDFKSS----SRIG-YRTLEVPSSRIVIIEGIYALSEKL-------RPL------- 177 (509)
Q Consensus 121 ~tl~e~L~~L~~----g~~i~~P~yD~~~~----~rsg-g~~~~v~~a~VLIVEGi~aL~dEl-------r~l------- 177 (509)
..+.+.|..+.. +..+.+|.||.+.. +|.. ++...+.|..++|+||.++....+ ++.
T Consensus 105 kll~evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl~~~~v~a~d~l~Gdl~~ 184 (282)
T KOG2878|consen 105 KLLVEVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPLPADVVKAVDPLQGDLEV 184 (282)
T ss_pred HHHHHHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccccchhheeccCcccccHHH
Confidence 888888877654 34588999999863 3322 245567789999999999865321 111
Q ss_pred ---------------CCeEEEeecC-chHHHHHHHHHHHH-----HcCCCHHHHHHHHHHhhhhHHHHhh
Q 010501 178 ---------------IDLRVSVTGG-VHFDLVKRVFRDIQ-----RVGQEPEEIIHQISETVYPMYKAFI 226 (509)
Q Consensus 178 ---------------LDlkIfVd~d-~dirLiRRI~RD~~-----erG~t~e~Vi~~y~~~V~P~~~~fI 226 (509)
+|-.|-+.++ ..--..+|+...+. ..|++-|+|.+ |-++..|.|..|+
T Consensus 185 VN~kL~~Y~d~~~k~Idslvv~~~q~inyVYrWRLQqEhal~~~~~kGMsDEeV~~-FV~rYmP~Yk~YL 253 (282)
T KOG2878|consen 185 VNKKLEAYYDAWDKYIDSLVVIKIQDINYVYRWRLQQEHALRQDGQKGMSDEEVND-FVSRYMPAYKAYL 253 (282)
T ss_pred HhhHHHHHHHHHHHhhhhEEEEEecCccHhhhhhHHHHHHHHHhhccCCCHHHHHH-HHHhhhhHHHhhh
Confidence 1222323322 11223344544443 46889998865 6677899999886
No 405
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=98.74 E-value=3.2e-09 Score=111.52 Aligned_cols=158 Identities=14% Similarity=0.128 Sum_probs=98.0
Q ss_pred eeeeEEEeCcE-EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc-------ccccc
Q 010501 40 EDTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~~-~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~-------r~i~~ 110 (509)
.+++.|.|... .-+..||+.+++|+ +|.|+|.||||||||++.|.|+. |.+|.|.+||..... ..++.
T Consensus 325 lrnvrfay~~~~FhvgPiNl~ikrGe---lvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSa 401 (546)
T COG4615 325 LRNVRFAYQDNAFHVGPINLTIKRGE---LVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSA 401 (546)
T ss_pred eeeeeeccCcccceecceeeEEecCc---EEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHH
Confidence 34555555433 34788999999999 99999999999999999999999 999999999984432 12333
Q ss_pred cCCCCCCCc----------hhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 111 NFDDPRLTD----------YDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 111 ~fq~p~~~d----------~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
+|.+..+|| ...+...++.+.-...+.+..-.++.-+.|.|++.+++.--+++=|-..++.||...--|+
T Consensus 402 vFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDP 481 (546)
T COG4615 402 VFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDP 481 (546)
T ss_pred HhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCCh
Confidence 444433332 2334555555543333444444555667777888777654444444455555554443332
Q ss_pred EEEeecCchHH--HHHHHHHHHHHcCCCHH
Q 010501 181 RVSVTGGVHFD--LVKRVFRDIQRVGQEPE 208 (509)
Q Consensus 181 kIfVd~d~dir--LiRRI~RD~~erG~t~e 208 (509)
.+| .-..+.-++++.|.|+-
T Consensus 482 --------aFRR~FY~~lLp~LK~qGKTI~ 503 (546)
T COG4615 482 --------AFRREFYQVLLPLLKEQGKTIF 503 (546)
T ss_pred --------HHHHHHHHHHhHHHHHhCCeEE
Confidence 222 11224555666666543
No 406
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=98.74 E-value=3.4e-09 Score=114.11 Aligned_cols=138 Identities=17% Similarity=0.134 Sum_probs=87.8
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhh----CCCeeEEEECCc-cCcc------ccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF----MPSIAVITMDNY-NDSS------RII 108 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~l----lp~~g~I~~D~y-~~~~------r~i 108 (509)
.++++..+|.+.+|..-++.+..|. -.|++|+||+|||||+++|+.- +|....+.-|+- +... ...
T Consensus 83 ~~~fdLa~G~k~LL~~a~L~L~~Gr---RYGLvGrNG~GKsTLLRaia~~~v~~f~veqE~~g~~t~~~~~~l~~D~~~~ 159 (582)
T KOG0062|consen 83 IDNFDLAYGGKILLNKANLTLSRGR---RYGLVGRNGIGKSTLLRAIANGQVSGFHVEQEVRGDDTEALQSVLESDTERL 159 (582)
T ss_pred eeeeeeeecchhhhcCCceeeeccc---ccceeCCCCCcHHHHHHHHHhcCcCccCchhheeccchHHHhhhhhccHHHH
Confidence 4567788899999999999999999 9999999999999999999872 232222222211 1000 112
Q ss_pred cccCCCCCCCchhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
.+..+++......++.+....+..|-......-.......|||-+.+++.++++..++.++|+|||+++||+
T Consensus 160 dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv 231 (582)
T KOG0062|consen 160 DFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDV 231 (582)
T ss_pred HHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchh
Confidence 333333322221122222221222211111111222356788888899999999999999999999999995
No 407
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.72 E-value=1.3e-08 Score=88.80 Aligned_cols=115 Identities=24% Similarity=0.399 Sum_probs=69.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCccccccccCCCCCC--CchhhHHHHHHhhccCcceeccccccCC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRL--TDYDTLLENIRGLKEGKAVQVPIYDFKS 145 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~r~i~~~fq~p~~--~d~~tl~e~L~~L~~g~~i~~P~yD~~~ 145 (509)
+|+|.|++||||||+++.|++.+ +.-.+++|++...........+.+.. .+...+.+.+..+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~-~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~------------- 66 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL-GFPVISMDDLIREPGWIERDDDEREYIDADIDLLDDILEQLQN------------- 66 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-TCEEEEEHHHHCCGTHCHGCTTCCHHHHHHHHHHHHHHHHHHE-------------
T ss_pred CEEEECCCCCCHHHHHHHHHHHH-CCeEEEecceEEeccccccCcchhhHHHHHHHHHHHHHHhhhc-------------
Confidence 68999999999999999999987 45578888842111111111111100 011111122211110
Q ss_pred CCcCCCeeeeecCccEEEEecceeeec-c-ccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 146 SSRIGYRTLEVPSSRIVIIEGIYALSE-K-LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 146 ~~rsgg~~~~v~~a~VLIVEGi~aL~d-E-lr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
......+|+||.+. .. + .....|..||++.+.+.++.+++.|...++|++.
T Consensus 67 ----------~~~~~~~ii~g~~~-~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~~~~~~r~~ 119 (121)
T PF13207_consen 67 ----------KPDNDNWIIDGSYE-SEMEIRLPEFDHVIYLDAPDEECRERRLKRRLRRRGRDR 119 (121)
T ss_dssp ----------TTT--EEEEECCSC-HCCHSCCHHGGCEEEEEEEEHHHHHHHHHHHHHHEESSC
T ss_pred ----------cCCCCeEEEeCCCc-cchhhhhhcCCEEEEEECCCHHHHHHHHHHHhHHcCCCC
Confidence 23456899999665 32 2 2223467899999988888999999999998864
No 408
>PRK07261 topology modulation protein; Provisional
Probab=98.71 E-value=2.8e-08 Score=93.74 Aligned_cols=124 Identities=19% Similarity=0.277 Sum_probs=79.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCccccccccCCCCCCCchhhHHHHHHhhccCcceeccccccCCCC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS 147 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~ 147 (509)
.|+|+|++|||||||++.|+..+ +...+++|...... .++.. +.+.+.+.+..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~-~~~~i~~D~~~~~~-----~~~~~---~~~~~~~~~~~~----------------- 55 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY-NCPVLHLDTLHFQP-----NWQER---DDDDMIADISNF----------------- 55 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh-CCCeEecCCEEecc-----ccccC---CHHHHHHHHHHH-----------------
Confidence 58999999999999999999887 33466777653211 11111 222222222221
Q ss_pred cCCCeeeeecCccEEEEecceee-e-ccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHh
Q 010501 148 RIGYRTLEVPSSRIVIIEGIYAL-S-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAF 225 (509)
Q Consensus 148 rsgg~~~~v~~a~VLIVEGi~aL-~-dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~f 225 (509)
+.... .|+||.|.- . +......|..||++.|...++.|.+.|.+..+|++..++.+...+.....+..|
T Consensus 56 --------~~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~rg~~r~~l~~g~~e~~~~~~l~~ 126 (171)
T PRK07261 56 --------LLKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKYRGKTRESMAENCPEKFDWEFIKW 126 (171)
T ss_pred --------HhCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHHcCCcCccccCCCcccCCHHHHHH
Confidence 11123 788999974 3 555557899999999999999999999999888876554443333333334455
Q ss_pred h
Q 010501 226 I 226 (509)
Q Consensus 226 I 226 (509)
+
T Consensus 127 i 127 (171)
T PRK07261 127 I 127 (171)
T ss_pred H
Confidence 4
No 409
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.70 E-value=2.1e-08 Score=117.49 Aligned_cols=158 Identities=17% Similarity=0.113 Sum_probs=117.9
Q ss_pred CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-C--CeeEEEECCccCc----cccccccCCCCCCCch
Q 010501 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P--SIAVITMDNYNDS----SRIIDGNFDDPRLTDY 120 (509)
Q Consensus 48 g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p--~~g~I~~D~y~~~----~r~i~~~fq~p~~~d~ 120 (509)
+.+.+|++|+=-+++|. +.++.|.||||||||++.|++.. . -.|.|.++|+... +|..||+-|+..-.+.
T Consensus 802 ~~~qLL~~V~G~~kPG~---LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~GYvqQ~DiH~~~ 878 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAFKPGV---LTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSGYVEQQDIHSPE 878 (1391)
T ss_pred cceEhhhcCceEecCCc---eeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccceeecccccCcc
Confidence 56779999999999999 99999999999999999999987 2 4789999999665 3678999988877788
Q ss_pred hhHHHHHHh---hccCcc----------------eeccccccC-CCC----cCCCeeeeecCccEEEEec-ceeeecccc
Q 010501 121 DTLLENIRG---LKEGKA----------------VQVPIYDFK-SSS----RIGYRTLEVPSSRIVIIEG-IYALSEKLR 175 (509)
Q Consensus 121 ~tl~e~L~~---L~~g~~----------------i~~P~yD~~-~~~----rsgg~~~~v~~a~VLIVEG-i~aL~dElr 175 (509)
.+++|-|.. |+.... ++.+.|... .+. ++..++.++.++-=|+-.+ .+++.|||+
T Consensus 879 ~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPT 958 (1391)
T KOG0065|consen 879 LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPT 958 (1391)
T ss_pred cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCC
Confidence 999998864 442211 222222111 122 4445677777777788888 777789999
Q ss_pred CCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHH
Q 010501 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQIS 215 (509)
Q Consensus 176 ~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~ 215 (509)
+.||- ..-..+-|+.|.+...|+++.=.+||-.
T Consensus 959 SGLDs-------qaA~~i~~~lrkla~tGqtIlCTIHQPS 991 (1391)
T KOG0065|consen 959 SGLDS-------QAAAIVMRFLRKLADTGQTILCTIHQPS 991 (1391)
T ss_pred CCccH-------HHHHHHHHHHHHHHhcCCeEEEEecCCc
Confidence 99997 3445677888899999998644444433
No 410
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.70 E-value=4.8e-09 Score=102.90 Aligned_cols=125 Identities=19% Similarity=0.119 Sum_probs=74.5
Q ss_pred CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-----------------CCee--------EEEECCcc
Q 010501 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-----------------PSIA--------VITMDNYN 102 (509)
Q Consensus 48 g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-----------------p~~g--------~I~~D~y~ 102 (509)
+...++.+++ ++ +++|+||||||||||+++|...+ ++.+ .+.+++..
T Consensus 13 ~~~~~~~~~~-----~~---~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~ 84 (243)
T cd03272 13 KDQTVIEPFS-----PK---HNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSD 84 (243)
T ss_pred ccCcccccCC-----CC---cEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCC
Confidence 3444555554 67 99999999999999999998432 2222 34444421
Q ss_pred ---C-------ccccccccCCCCCCCch-hhHHHHHHhhcc-Ccce----------------e-ccccccCCCCcCCCee
Q 010501 103 ---D-------SSRIIDGNFDDPRLTDY-DTLLENIRGLKE-GKAV----------------Q-VPIYDFKSSSRIGYRT 153 (509)
Q Consensus 103 ---~-------~~r~i~~~fq~p~~~d~-~tl~e~L~~L~~-g~~i----------------~-~P~yD~~~~~rsgg~~ 153 (509)
. ..+.+++.++++..++. .+..+....+.. +-.. . .+..+......|+|+.
T Consensus 85 ~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~l~~l~~~~~~~~~~lS~G~~ 164 (243)
T cd03272 85 NRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQGKINSLTNMKQDEQQEMQQLSGGQK 164 (243)
T ss_pred CccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcCchHHhhhccccccccccccCHHHH
Confidence 0 01235566665544432 233332222221 1000 0 0112334456788899
Q ss_pred eeecCccEEEE----ecceeeeccccCCCCe
Q 010501 154 LEVPSSRIVII----EGIYALSEKLRPLIDL 180 (509)
Q Consensus 154 ~~v~~a~VLIV----EGi~aL~dElr~lLDl 180 (509)
+++..+++++. ++.+++.|||...+|.
T Consensus 165 ~r~~la~~l~~~~~~~~~illlDEp~~~ld~ 195 (243)
T cd03272 165 SLVALALIFAIQKCDPAPFYLFDEIDAALDA 195 (243)
T ss_pred HHHHHHHHHHHhccCCCCEEEEECCccCCCH
Confidence 99999998863 4689999999999997
No 411
>PRK08118 topology modulation protein; Reviewed
Probab=98.70 E-value=1.7e-07 Score=88.25 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=83.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCccccccccCCCCCCCchhhHHHHHHhhccCcceeccccccCCCC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS 147 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~ 147 (509)
-|.|+|++|||||||++.|+..+ ....+++|...-.. + +.. .+.+.+.+.+..+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l-~~~~~~lD~l~~~~---~--w~~---~~~~~~~~~~~~~~~--------------- 58 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKL-NIPVHHLDALFWKP---N--WEG---VPKEEQITVQNELVK--------------- 58 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCCceecchhhccc---C--CcC---CCHHHHHHHHHHHhc---------------
Confidence 58999999999999999999987 34456666542110 1 111 111122222222110
Q ss_pred cCCCeeeeecCccEEEEecceee-eccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHH------------H---HH
Q 010501 148 RIGYRTLEVPSSRIVIIEGIYAL-SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE------------E---II 211 (509)
Q Consensus 148 rsgg~~~~v~~a~VLIVEGi~aL-~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e------------~---Vi 211 (509)
..-.|+||.|.- .+......|..||+|.|..+++.|-+.|.+..+|.+.. + .+
T Consensus 59 -----------~~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~g~~~~~~~~g~~e~~~~~~l~wi 127 (167)
T PRK08118 59 -----------EDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRRVQYRGKTRPDMGAGCEEKFDLQFFKWI 127 (167)
T ss_pred -----------CCCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHHHcCCCCCCCCCCCcccCCHHHHHHH
Confidence 123688998873 35445679999999999999999999998887775421 1 23
Q ss_pred HHHHHhhhhHHHHhhcCCCCceeEEE
Q 010501 212 HQISETVYPMYKAFIEPDLQTAHIKI 237 (509)
Q Consensus 212 ~~y~~~V~P~~~~fIeP~k~~ADIII 237 (509)
..|....+|.+...++.......+++
T Consensus 128 ~~~~~~~r~~~~~~~~~~~~~~~~~~ 153 (167)
T PRK08118 128 WEYPKTKRPSILKRLNQLSEEKDIVI 153 (167)
T ss_pred HhCchhhhHHHHHHHHhcCCCCeEEE
Confidence 34444556666666654443444443
No 412
>PRK06217 hypothetical protein; Validated
Probab=98.65 E-value=1.6e-07 Score=88.97 Aligned_cols=105 Identities=22% Similarity=0.242 Sum_probs=66.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCccccccccCCCCCCCchhhHHHHHHhhccCcceeccccccCCCC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS 147 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~ 147 (509)
.|.|+|++||||||+++.|+..+ +.-.+++|.+........+....+ +.......+..+.
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l-~~~~~~~D~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~---------------- 62 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL-DIPHLDTDDYFWLPTDPPFTTKRP---PEERLRLLLEDLR---------------- 62 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCcEEEcCceeeccCCCCccccCC---HHHHHHHHHHHHh----------------
Confidence 68999999999999999999998 344677787643211110000111 0011111111110
Q ss_pred cCCCeeeeecCccEEEEecceeee-ccccCCCCeEEEeecCchHHHHHHHHHHHHH
Q 010501 148 RIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR 202 (509)
Q Consensus 148 rsgg~~~~v~~a~VLIVEGi~aL~-dElr~lLDlkIfVd~d~dirLiRRI~RD~~e 202 (509)
...-.|+||.+..+ +.+....|..||++++.++++.|...|....
T Consensus 63 ----------~~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~~ 108 (183)
T PRK06217 63 ----------PREGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREFQR 108 (183)
T ss_pred ----------cCCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCcccc
Confidence 11246888988865 5667789999999999999888888787653
No 413
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.65 E-value=3.1e-08 Score=95.78 Aligned_cols=159 Identities=19% Similarity=0.275 Sum_probs=92.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccC-----cc-------cccc-ccCCCCCCCchhhHHHHHHh----h
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND-----SS-------RIID-GNFDDPRLTDYDTLLENIRG----L 130 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~-----~~-------r~i~-~~fq~p~~~d~~tl~e~L~~----L 130 (509)
+|||+|++||||||+++.|.+. +.-.|..|.... .. ...+ .+++.....|-..+.+.+-. +
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~--g~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~~~ 78 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEEL--GAFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEEKL 78 (196)
T ss_pred CEEEECCCCccHHHHHHHHHHC--CCEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHHHH
Confidence 4899999999999999998764 344555555410 00 0011 12222233443333333210 1
Q ss_pred ccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHH
Q 010501 131 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (509)
Q Consensus 131 ~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~V 210 (509)
..-..+..|........... ......++++|-.+++-......+|..|||++|.+.++.|.+.| .|.+.+++
T Consensus 79 ~~L~~i~hP~v~~~~~~~~~----~~~~~~~vi~e~pLL~E~~~~~~~D~vi~V~a~~e~r~~RL~~R----~g~s~e~a 150 (196)
T PRK14732 79 KALNELIHPLVRKDFQKILQ----TTAEGKLVIWEVPLLFETDAYTLCDATVTVDSDPEESILRTISR----DGMKKEDV 150 (196)
T ss_pred HHHHHHhhHHHHHHHHHHHH----HHhcCCcEEEEeeeeeEcCchhhCCEEEEEECCHHHHHHHHHHc----CCCCHHHH
Confidence 11112333321111100000 01123578888888877667778999999999998877666655 58898888
Q ss_pred HHHHHHhhhhHHHHhhcCCCCceeEEEcCCCC
Q 010501 211 IHQISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (509)
Q Consensus 211 i~~y~~~V~P~~~~fIeP~k~~ADIII~n~~~ 242 (509)
..++... .| +++.+..||++|.|+.+
T Consensus 151 ~~ri~~Q-~~-----~~~k~~~aD~vI~N~~~ 176 (196)
T PRK14732 151 LARIASQ-LP-----ITEKLKRADYIVRNDGN 176 (196)
T ss_pred HHHHHHc-CC-----HHHHHHhCCEEEECCCC
Confidence 8877543 23 34457889999987654
No 414
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.62 E-value=6.6e-09 Score=123.42 Aligned_cols=148 Identities=19% Similarity=0.212 Sum_probs=106.8
Q ss_pred cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCCchhhHHHHH
Q 010501 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENI 127 (509)
Q Consensus 49 ~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~d~~tl~e~L 127 (509)
..+.|++||+.+++|+ .++|+|+.|||||+|+.+|.|.+ ...|.+.+.|- ++|++|.|..+ ..++++||
T Consensus 533 ~~~tL~dIn~~i~~G~---lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs------iaYv~Q~pWI~-ngTvreNI 602 (1381)
T KOG0054|consen 533 PEPTLKDINFEIKKGQ---LVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS------VAYVPQQPWIQ-NGTVRENI 602 (1381)
T ss_pred CcccccceeEEecCCC---EEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe------EEEeccccHhh-CCcHHHhh
Confidence 3448999999999999 99999999999999999999999 46788888763 77888888654 35778887
Q ss_pred HhhccCcc---------------e-eccccccCC-----CCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeec
Q 010501 128 RGLKEGKA---------------V-QVPIYDFKS-----SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (509)
Q Consensus 128 ~~L~~g~~---------------i-~~P~yD~~~-----~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~ 186 (509)
.+-..-.. + ..|.=|... -..|||+++++..||++.-+-..-|+|+|.+.+|..
T Consensus 603 LFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDah----- 677 (1381)
T KOG0054|consen 603 LFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAH----- 677 (1381)
T ss_pred hcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHh-----
Confidence 65432210 1 113223221 246899999999999999999999999998888763
Q ss_pred CchHHHHHHHHHHHHHcCCCHHHHHHH
Q 010501 187 GVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (509)
Q Consensus 187 d~dirLiRRI~RD~~erG~t~e~Vi~~ 213 (509)
..-.+..+..+.. -+++|..-|.|+
T Consensus 678 -vg~~if~~ci~~~-L~~KT~ILVTHq 702 (1381)
T KOG0054|consen 678 -VGKHIFEECIRGL-LRGKTVILVTHQ 702 (1381)
T ss_pred -hhHHHHHHHHHhh-hcCCEEEEEeCc
Confidence 2334445554333 245565555554
No 415
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=98.59 E-value=4.9e-08 Score=94.14 Aligned_cols=160 Identities=19% Similarity=0.204 Sum_probs=91.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccC-----cc---cc----cc-ccCCCCC-CCchhhHHHHHHh----
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND-----SS---RI----ID-GNFDDPR-LTDYDTLLENIRG---- 129 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~-----~~---r~----i~-~~fq~p~-~~d~~tl~e~L~~---- 129 (509)
+|||+|+.||||||+++.|...+ +...++.|.... .. .. .+ -+++... .+|-..+.+.+-.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~-g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQK-GIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhh-CCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 79999999999999999999875 344566665411 00 00 11 0111122 2332222222100
Q ss_pred hccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHH
Q 010501 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (509)
Q Consensus 130 L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~ 209 (509)
...-..+..|..-....... .......++++|-.+++-..+...+|..|+|++|.++++.|.+.|+ |.+.++
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~----~~~~~~~~vv~e~pll~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~----g~s~e~ 153 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEEL----AQLKSNPIVVLVIPLLFEAKLTDLCSEIWVVDCSPEQQLQRLIKRD----GLTEEE 153 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHH----HhcCCCCEEEEEeHHhcCcchHhCCCEEEEEECCHHHHHHHHHHcC----CCCHHH
Confidence 00001122231000000000 0011235888888888776777889999999999998877776664 888888
Q ss_pred HHHHHHHhhhhHHHHhhcCCCCceeEEEcCCCC
Q 010501 210 IIHQISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (509)
Q Consensus 210 Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~~~ 242 (509)
+..+.... .| +++.+..||++|.|+.+
T Consensus 154 ~~~ri~~Q-~~-----~~~k~~~aD~vI~N~g~ 180 (195)
T PRK14730 154 AEARINAQ-WP-----LEEKVKLADVVLDNSGD 180 (195)
T ss_pred HHHHHHhC-CC-----HHHHHhhCCEEEECCCC
Confidence 77766433 23 33456789999987654
No 416
>cd07890 CYTH-like_AC_IV-like Adenylyl cyclase (AC) class IV-like, a subgroup of the CYTH-like superfamily. This subgroup contains class IV ACs and similar proteins. AC catalyzes the conversion of ATP to 3',5'-cyclic AMP (cAMP) and PPi. cAMP is a key signaling molecule which conveys a variety of signals in different cell types. In prokaryotes, cAMP is a catabolite derepression signal which triggers the expression of metabolic pathways including the lactose operon. Six non-homologous classes of ACs have been identified (I-VI). Class IV ACs are found in this group. In bacteria, the gene encoding Class IV AC has been designated cyaB and the protein as AC2. AC-IV occurs in addition to AC-I in bacterial pathogens such as Yersinia pestis (plague disease). The role of AC-IV is unknown but it has been speculated that it may be a factor in pathogenesis, perhaps providing cAMP for a secondary internal signaling function, or for secretion and uptake into host cells, where it may disrupt normal cel
Probab=98.57 E-value=3.3e-07 Score=86.14 Aligned_cols=145 Identities=23% Similarity=0.255 Sum_probs=117.7
Q ss_pred HHHHHHHhccc--ccccccceeeEEEeCCCCCccccccceeeeccC--ceEEEEeeecccCCCeEeccccceee--ceee
Q 010501 262 VDEIKAVMSKE--HTETTEETYDIYLLPPGEDPDACQSYLRMRNRD--GKYNLMFEEWVTDSPFIISPRITFEV--SVRL 335 (509)
Q Consensus 262 ~~~i~~~l~~~--~~~~~~~~~diyl~pp~~~~~~~~~~ir~r~~~--~~~~l~~~~~i~~~~f~~~P~~~f~v--~~~~ 335 (509)
.+.+.+.|... .........|+|+..|+.+.....-|+|.|..+ |.+.+.+..+-.++.+..++-.+++| ...+
T Consensus 11 ~~~~~~~l~~l~~~~~~~~~q~d~Yfd~p~~~l~~~~~~LRiR~~~~~~~~~lT~K~~~~~~~~~~~~E~e~~v~~~~~~ 90 (169)
T cd07890 11 LEALRERLAALGGAEGGREFQEDIYFDHPDRDLAATDEALRLRRMGDSGKTLLTYKGPKLDGGPKVREEIETEVADPEAM 90 (169)
T ss_pred HHHHHHHHHhcccccccceeEeEEEEcCCchhHHhCCCcEEEEEeCCCCcEEEEEECCCCCCCccceEEEEEecCCHHHH
Confidence 45555566552 222334566999999999999899999999998 99888888777776566777777776 2334
Q ss_pred cccccccCceEEEEEEeccceeecCcEEEEehhhhhcCcceEEEecc------ChhHHHHHHhhhcCcc-CccchhHHH
Q 010501 336 LGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR------DRLYVKYVGEQLGLDG-SYVPRTYIE 407 (509)
Q Consensus 336 ~~gl~~lgy~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~------~~~~v~~~~~~l~~~~-~~~~~~y~~ 407 (509)
.+-|..|||.....+...-..|.-+.+.|.+|++++|+. |+.|.+. .++.+..++.+||+.+ .-+++||+|
T Consensus 91 ~~iL~~lg~~~~~~~~K~R~~~~~~~~~v~lD~~~~lG~-f~EiE~~~~~~~~~~~~l~~~~~~lg~~~~~~~~~sy~~ 168 (169)
T cd07890 91 KEILERLGFGPVGRVKKEREIYLLGQTRVHLDRVEGLGD-FVEIEVVLEDIEEAEEGLGEAAELLGLLEYDEETLSYLE 168 (169)
T ss_pred HHHHHHcCCceeEEEEEEEEEEEECCEEEEEEccCCCCc-eEEEEEEeCCcHHHHHHHHHHHHHcCCCccCchhhhhhc
Confidence 445678999999999999999999999999999999987 9999999 8889999999999987 789999986
No 417
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.57 E-value=4.5e-08 Score=98.82 Aligned_cols=153 Identities=16% Similarity=0.119 Sum_probs=96.7
Q ss_pred EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHH-----hhC------CC-----------eeEEEECCccCcc--
Q 010501 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVL-----NFM------PS-----------IAVITMDNYNDSS-- 105 (509)
Q Consensus 50 ~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~-----~ll------p~-----------~g~I~~D~y~~~~-- 105 (509)
..-|+++++.++.|. +++|+|+||||||||++.+. ..+ |. ...+.+|......
T Consensus 8 ~~nl~~v~~~ip~g~---~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~ 84 (261)
T cd03271 8 ENNLKNIDVDIPLGV---LTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTP 84 (261)
T ss_pred hhcCCCceeeccCCc---EEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCC
Confidence 446899999999999 99999999999999998662 111 10 1134444332111
Q ss_pred cc----ccccCC---------------------------CCCCCchhhHHHHHHhhccCc----------ceecc--ccc
Q 010501 106 RI----IDGNFD---------------------------DPRLTDYDTLLENIRGLKEGK----------AVQVP--IYD 142 (509)
Q Consensus 106 r~----i~~~fq---------------------------~p~~~d~~tl~e~L~~L~~g~----------~i~~P--~yD 142 (509)
|. ...+|| +...+..+++.+++.++..-. .+... ..+
T Consensus 85 rs~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~~~~~~~~~L~~vgL~~l~l~ 164 (261)
T cd03271 85 RSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLG 164 (261)
T ss_pred CCcHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhhhHHHHHHHHHHcCCchhhhc
Confidence 10 011122 222233455666665543211 11121 235
Q ss_pred cCCCCcCCCeeeeecCccEEEEe---cceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 143 FKSSSRIGYRTLEVPSSRIVIIE---GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 143 ~~~~~rsgg~~~~v~~a~VLIVE---Gi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
......|+|+.+++..++.+.-+ +.+++.|||...+|. .+...+..+.+++.++|.++.-+.|
T Consensus 165 ~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~-------~~~~~l~~~L~~l~~~g~tvIiitH 230 (261)
T cd03271 165 QPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHF-------HDVKKLLEVLQRLVDKGNTVVVIEH 230 (261)
T ss_pred CccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCH-------HHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 55567899999999999999986 578889999999998 4566667777777777776544433
No 418
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.57 E-value=2.4e-08 Score=108.24 Aligned_cols=136 Identities=21% Similarity=0.261 Sum_probs=86.1
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccc-------ccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSR-------IIDGN 111 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r-------~i~~~ 111 (509)
..++++.+..+.++++..|.+..|+ -.||+|+|||||||++++|++-. |.. -++|-|...+. .+..+
T Consensus 78 ~~sls~s~~g~~l~kd~~~El~~g~---rygLiG~nG~Gkst~L~~i~~~e~P~p--~~~d~y~ls~e~~ps~~~av~~v 152 (614)
T KOG0927|consen 78 IESLSLSFHGVELIKDVTLELNRGR---RYGLIGPNGSGKSTFLRAIAGREVPIP--EHIDFYLLSREIEPSEKQAVQAV 152 (614)
T ss_pred eeeeeeccCCceeeeeeeEEecCCc---eEEEEcCCCCcHhHHHHHHhcCCCCCC--cccchhhhcccCCCchHHHHHHH
Confidence 3556777778899999999999999 99999999999999999999887 421 22333322110 00000
Q ss_pred C---------------------CCCCCCchhhHHHHHHhhc------------cCcceeccccccCCCCcCCCeeeeecC
Q 010501 112 F---------------------DDPRLTDYDTLLENIRGLK------------EGKAVQVPIYDFKSSSRIGYRTLEVPS 158 (509)
Q Consensus 112 f---------------------q~p~~~d~~tl~e~L~~L~------------~g~~i~~P~yD~~~~~rsgg~~~~v~~ 158 (509)
+ ++...-..+.+.+.+.... .+-....-.-+......|+|.+.++..
T Consensus 153 ~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrmR~aL 232 (614)
T KOG0927|consen 153 VMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRMRAAL 232 (614)
T ss_pred hhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHHHHHH
Confidence 0 1111111111222222111 111011111233345567888899999
Q ss_pred ccEEEEecceeeeccccCCCCe
Q 010501 159 SRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 159 a~VLIVEGi~aL~dElr~lLDl 180 (509)
+++|++++.++|+|||++.||+
T Consensus 233 Ar~Lf~kP~LLLLDEPtnhLDl 254 (614)
T KOG0927|consen 233 ARALFQKPDLLLLDEPTNHLDL 254 (614)
T ss_pred HHHHhcCCCEEEecCCccCCCH
Confidence 9999999999999999999997
No 419
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=98.56 E-value=2e-08 Score=97.35 Aligned_cols=126 Identities=14% Similarity=0.110 Sum_probs=77.2
Q ss_pred EEEEECCCCCcHHHHHHHHH----hhC-CCeeEEEECCc----cCccccccccCCCCC-----CCchhhHHHHHHhhccC
Q 010501 68 LVGVAGPSGAGKTVFTEKVL----NFM-PSIAVITMDNY----NDSSRIIDGNFDDPR-----LTDYDTLLENIRGLKEG 133 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~----~ll-p~~g~I~~D~y----~~~~r~i~~~fq~p~-----~~d~~tl~e~L~~L~~g 133 (509)
+++|.||||||||||+++|. +.. +..+.+..+.. ......+.+.|+++. .....++.+++....++
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~~~~~~~~~~ 103 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAILENVIFCHQG 103 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHhhceeeechH
Confidence 99999999999999999996 443 33343321111 111234566777662 12222555555432211
Q ss_pred cceeccccccCCCCcCCCeeee------ecCccEEEEecceeeeccccCCCCeEEEeecCchHH-HHHHHHHHHHH
Q 010501 134 KAVQVPIYDFKSSSRIGYRTLE------VPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFD-LVKRVFRDIQR 202 (509)
Q Consensus 134 ~~i~~P~yD~~~~~rsgg~~~~------v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dir-LiRRI~RD~~e 202 (509)
+ +. ...+......|+|+.++ +..++++..++.+++.|||...+|.. ..+ .+..+.+++..
T Consensus 104 ~-~~-~~~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~-------~~~~~l~~~l~~~~~ 170 (204)
T cd03240 104 E-SN-WPLLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEE-------NIEESLAEIIEERKS 170 (204)
T ss_pred H-HH-HHHhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHH-------HHHHHHHHHHHHHHh
Confidence 1 11 12244556778888775 67888999999999999999999972 334 44555555443
No 420
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.55 E-value=1.7e-07 Score=90.81 Aligned_cols=162 Identities=14% Similarity=0.194 Sum_probs=91.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc-----cCcc-------ccccccCC-CCCCCchhhHHHHHH----h
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY-----NDSS-------RIIDGNFD-DPRLTDYDTLLENIR----G 129 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y-----~~~~-------r~i~~~fq-~p~~~d~~tl~e~L~----~ 129 (509)
.+|||+|+.||||||+++.|.. . +.-.|..|.. .... ...+..+. ....+|-..+.+.+- .
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~-g~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~~~ 79 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-E-GFLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASPEQ 79 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C-CCeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCHHH
Confidence 4899999999999999999987 3 3345555542 1111 11222221 223333333332221 0
Q ss_pred hccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHH
Q 010501 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (509)
Q Consensus 130 L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~ 209 (509)
+..-..+..|.......... ....-....++++|-.+++-......+|..|||++|.+.++.| ...++|.+.++
T Consensus 80 ~~~le~i~hP~v~~~~~~~~--~~~~~~~~~~vv~e~plL~e~g~~~~~D~vi~V~a~~e~ri~R----l~~R~g~s~e~ 153 (200)
T PRK14734 80 TALLNAITHPRIAEETARRF--NEARAQGAKVAVYDMPLLVEKGLDRKMDLVVVVDVDVEERVRR----LVEKRGLDEDD 153 (200)
T ss_pred HHHHHHhhCHHHHHHHHHHH--HHHHhcCCCEEEEEeeceeEcCccccCCeEEEEECCHHHHHHH----HHHcCCCCHHH
Confidence 11111222332110000000 0000112367888888887777778899999999999886543 33346899999
Q ss_pred HHHHHHHhhhhHHHHhhcCCCCceeEEEcCCCC
Q 010501 210 IIHQISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (509)
Q Consensus 210 Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~~~ 242 (509)
+..++.....+.+. +..||++|.|+.+
T Consensus 154 ~~~ri~~Q~~~~~k------~~~ad~vI~N~g~ 180 (200)
T PRK14734 154 ARRRIAAQIPDDVR------LKAADIVVDNNGT 180 (200)
T ss_pred HHHHHHhcCCHHHH------HHhCCEEEECcCC
Confidence 88888766554433 3689999987654
No 421
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=98.55 E-value=7.1e-08 Score=106.77 Aligned_cols=137 Identities=14% Similarity=0.133 Sum_probs=93.8
Q ss_pred eeeeEEEe-CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC-CeeEEEECC----ccCccc-------
Q 010501 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDN----YNDSSR------- 106 (509)
Q Consensus 40 ~~~lsf~~-g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp-~~g~I~~D~----y~~~~r------- 106 (509)
.++++... +....+++.++.+++|+ -+.|.|+||||||||+|+|+|+.| ..|.|.+=. ++.+.+
T Consensus 395 ~~nl~l~~p~~~~ll~~l~~~v~~G~---~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~~~~~lflpQ~PY~p~Gt 471 (604)
T COG4178 395 LENLSLRTPDGQTLLSELNFEVRPGE---RLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLFLPQRPYLPQGT 471 (604)
T ss_pred EeeeeEECCCCCeeeccceeeeCCCC---EEEEECCCCCCHHHHHHHHhccCccCCCceecCCCCceEEecCCCCCCCcc
Confidence 45565543 44688999999999999 999999999999999999999997 567776641 111111
Q ss_pred ---cccccCCCCCCCchhhHHHHHHhhccCccee-ccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 107 ---IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 107 ---~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~-~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
.+. -++.+..++...+.+.|....-+.-+. ...-+.-....|+|++|+++-+++++--+.++++||-++.+|.
T Consensus 472 Lre~l~-YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe 548 (604)
T COG4178 472 LREALC-YPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548 (604)
T ss_pred HHHHHh-CCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccCh
Confidence 011 122222255566666665433222111 0111112245788999999999999999999999999999986
No 422
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=98.54 E-value=2.8e-08 Score=96.44 Aligned_cols=140 Identities=15% Similarity=0.138 Sum_probs=80.8
Q ss_pred eeeceeee-cCCccEEEEEECCCCCcHHHHHHHHHhhC--CCeeEEEEC----Ccc--CccccccccCCCCCC-------
Q 010501 54 RACQLLAQ-KNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMD----NYN--DSSRIIDGNFDDPRL------- 117 (509)
Q Consensus 54 k~IsL~i~-~Ge~~iIIgI~GpSGSGKTTLar~L~~ll--p~~g~I~~D----~y~--~~~r~i~~~fq~p~~------- 117 (509)
..++|... +|+ +++|+|+||||||||+++|+..+ +..+....+ .+. .....+++.|+++..
T Consensus 18 ~~i~~~~~~~~~---~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~~~~r~ 94 (213)
T cd03279 18 QVIDFTGLDNNG---LFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKYRVERS 94 (213)
T ss_pred eEEeCCCCCccC---EEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEEEEEEe
Confidence 34444433 477 99999999999999999998654 222222211 111 112235555655432
Q ss_pred --CchhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEE----------ecceeeeccccCCCCeEEEee
Q 010501 118 --TDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVII----------EGIYALSEKLRPLIDLRVSVT 185 (509)
Q Consensus 118 --~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIV----------EGi~aL~dElr~lLDlkIfVd 185 (509)
.+...+.+.+ .+..+. ..+..+...+..|+|+.+++..+++++. ++.+++.|||...+|.
T Consensus 95 ~gl~~~~~~~~~-~l~~g~--l~~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~----- 166 (213)
T cd03279 95 RGLDYDQFTRIV-LLPQGE--FDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDP----- 166 (213)
T ss_pred cCCCHHHHHHhh-hhhhcc--hHHHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCH-----
Confidence 2222222111 011111 0122344556788899999999998874 4578899999999997
Q ss_pred cCchHHHHHHHHHHHHHcCCC
Q 010501 186 GGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 186 ~d~dirLiRRI~RD~~erG~t 206 (509)
...+.+.++.+++.++|.+
T Consensus 167 --~~~~~~~~~l~~~~~~~~t 185 (213)
T cd03279 167 --EALEAVATALELIRTENRM 185 (213)
T ss_pred --HHHHHHHHHHHHHHhCCCE
Confidence 3444555555555554554
No 423
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=98.52 E-value=1.5e-07 Score=83.10 Aligned_cols=69 Identities=17% Similarity=0.039 Sum_probs=51.6
Q ss_pred EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCc-------cccccccCCCCCCCchhh
Q 010501 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDT 122 (509)
Q Consensus 50 ~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~-------~r~i~~~fq~p~~~d~~t 122 (509)
.++|+++++.++.|+ +++|.||||||||||++++. .|.+.+++.... .+...+.+|+ .-+.+
T Consensus 2 ~~aL~~vsl~i~~ge---~v~I~GpSGsGKSTLl~~l~-----~G~i~~~g~di~~~~~~~~~~~~~~~~q~---lf~~t 70 (107)
T cd00820 2 TTSLHGVLVDVYGKV---GVLITGDSGIGKTELALELI-----KRKHRLVGDDNVEIREDSKDELIGRNPEL---GLEIR 70 (107)
T ss_pred ceEEEeeEEEEcCCE---EEEEEcCCCCCHHHHHHHhh-----CCeEEEeeEeHHHhhhhhcCCEEEEechh---cchhh
Confidence 468999999999999 99999999999999999986 455666665321 1224455555 44567
Q ss_pred HHHHHHh
Q 010501 123 LLENIRG 129 (509)
Q Consensus 123 l~e~L~~ 129 (509)
+++||..
T Consensus 71 i~~Ni~~ 77 (107)
T cd00820 71 LRLNIFL 77 (107)
T ss_pred HHhhcee
Confidence 8888765
No 424
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.51 E-value=1.8e-07 Score=90.93 Aligned_cols=74 Identities=24% Similarity=0.254 Sum_probs=50.8
Q ss_pred ccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEc
Q 010501 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (509)
Q Consensus 159 a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~ 238 (509)
..++++|+.+++-..+...+|..++|++|.+++..|-+.| .+.+.+++..+... ..+.. ..+ ..||++|.
T Consensus 115 ~~vvv~e~pLL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R----~~~s~e~~~~Ri~~-q~~~~-~~~----~~ad~vI~ 184 (208)
T PRK14731 115 KRILVKEAAILFESGGDAGLDFIVVVAADTELRLERAVQR----GMGSREEIRRRIAA-QWPQE-KLI----ERADYVIY 184 (208)
T ss_pred CCEEEEEeeeeeecCchhcCCeEEEEECCHHHHHHHHHHc----CCCCHHHHHHHHHH-cCChH-HHH----HhCCEEEE
Confidence 3688999997776677778999999999988866555554 34566776666543 33332 223 36899997
Q ss_pred CCCC
Q 010501 239 NKFN 242 (509)
Q Consensus 239 n~~~ 242 (509)
|+.+
T Consensus 185 N~g~ 188 (208)
T PRK14731 185 NNGT 188 (208)
T ss_pred CCCC
Confidence 7553
No 425
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=98.50 E-value=1.5e-07 Score=90.44 Aligned_cols=160 Identities=21% Similarity=0.219 Sum_probs=90.2
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCc----cc--------cccc-cCCCCCCCchhhHHHHHHh----
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----SR--------IIDG-NFDDPRLTDYDTLLENIRG---- 129 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~----~r--------~i~~-~fq~p~~~d~~tl~e~L~~---- 129 (509)
.+|||+|+.||||||+++.|.. + +...|..|..... .. ..+- .+.....+|-..+.+.+-.
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~-g~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~~ 80 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-L-GAPVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSDPEA 80 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-c-CCEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCCHHH
Confidence 5899999999999999999988 5 4557777765210 00 0110 2221223343333332210
Q ss_pred hccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHH
Q 010501 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (509)
Q Consensus 130 L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~ 209 (509)
+..-..+..|..-....... .......++++|..+++-......+|..++|++|.++++.|-..| +|.+.++
T Consensus 81 ~~~L~~i~hP~v~~~~~~~~----~~~~~~~~vv~e~pll~e~~~~~~~D~vi~V~a~~e~~~~Rl~~R----~~~s~e~ 152 (194)
T PRK00081 81 RKKLEAILHPLIREEILEQL----QEAESSPYVVLDIPLLFENGLEKLVDRVLVVDAPPETQLERLMAR----DGLSEEE 152 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHcccCCEEEEEehHhhcCCchhhCCeEEEEECCHHHHHHHHHHc----CCCCHHH
Confidence 00011122232111100000 001112689999999988788888999999999988765443333 5778877
Q ss_pred HHHHHHHhhhhHHHHhhcCCCCceeEEEcCCCC
Q 010501 210 IIHQISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (509)
Q Consensus 210 Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~~~ 242 (509)
+....... .+.. .....||++|.|+.+
T Consensus 153 ~~~ri~~Q-~~~~-----~~~~~ad~vI~N~g~ 179 (194)
T PRK00081 153 AEAIIASQ-MPRE-----EKLARADDVIDNNGD 179 (194)
T ss_pred HHHHHHHh-CCHH-----HHHHhCCEEEECCCC
Confidence 66665432 3322 234678999977543
No 426
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.45 E-value=1.7e-07 Score=100.14 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=77.8
Q ss_pred eeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCCchhhHHHHHHhhccC----
Q 010501 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEG---- 133 (509)
Q Consensus 59 ~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~d~~tl~e~L~~L~~g---- 133 (509)
.+..|+ +|||+||||-|||||++.|++.+ |+.|. ..+ -.++|-+|.-..-...++.+.+......
T Consensus 363 ~i~~gE---vigilGpNgiGKTTFvk~LAG~ikPdeg~-~~~------~~vSyKPQyI~~~~~gtV~~~l~~~~~~~~~~ 432 (591)
T COG1245 363 EIYDGE---VIGILGPNGIGKTTFVKLLAGVIKPDEGS-EED------LKVSYKPQYISPDYDGTVEDLLRSAIRSAFGS 432 (591)
T ss_pred eeecce---EEEEECCCCcchHHHHHHHhccccCCCCC-Ccc------ceEeecceeecCCCCCcHHHHHHHhhhhhccc
Confidence 345678 99999999999999999999999 77664 111 1223333322222223444444332211
Q ss_pred ----cceec-----cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 134 ----KAVQV-----PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 134 ----~~i~~-----P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
..+.. +.++.....+|||+.|+++.+..|.-|..+-|+|||.+.||.
T Consensus 433 s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDv 488 (591)
T COG1245 433 SYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDV 488 (591)
T ss_pred chhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccH
Confidence 01222 357888889999999999999999999999999999999997
No 427
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.44 E-value=2.6e-08 Score=97.15 Aligned_cols=37 Identities=22% Similarity=0.321 Sum_probs=30.1
Q ss_pred EeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 46 ~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.++...+++++++ + ++||+|||||||||++++|...+
T Consensus 13 ~~~~~~~l~~~~~-----~---i~~ivGpNGaGKSTll~~i~~~~ 49 (212)
T cd03274 13 SYAGEQVIGPFHK-----S---FSAIVGPNGSGKSNVIDSMLFVF 49 (212)
T ss_pred cCCCCeeeccCCC-----C---eEEEECCCCCCHHHHHHHHHHHh
Confidence 3456667777776 5 99999999999999999998543
No 428
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.42 E-value=1.2e-06 Score=86.01 Aligned_cols=181 Identities=13% Similarity=0.204 Sum_probs=112.1
Q ss_pred EeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccC--------cc--------cccc
Q 010501 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND--------SS--------RIID 109 (509)
Q Consensus 46 ~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~--------~~--------r~i~ 109 (509)
..|...+++.+|+++.+|+ +-|++|.||||||-.|++|++...+.=.|.-|-|.. .. +.++
T Consensus 16 sqG~vK~VD~v~ltlnEGE---i~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~is 92 (330)
T COG4170 16 SQGWVKAVDRVSMTLNEGE---IRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVS 92 (330)
T ss_pred CCCceEeeeeeeeeeccce---eeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchh
Confidence 3467789999999999999 999999999999999999999985444454444421 11 2467
Q ss_pred ccCCCCCCC--chhhHHHHH-Hhhcc----C-----------ccee----ccccccC------CCCcCCCeeeeecCccE
Q 010501 110 GNFDDPRLT--DYDTLLENI-RGLKE----G-----------KAVQ----VPIYDFK------SSSRIGYRTLEVPSSRI 161 (509)
Q Consensus 110 ~~fq~p~~~--d~~tl~e~L-~~L~~----g-----------~~i~----~P~yD~~------~~~rsgg~~~~v~~a~V 161 (509)
+.||+|... +-..+...+ ..+-. | ..++ +-..|+. ..+...|+-+.+..+-+
T Consensus 93 MIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A 172 (330)
T COG4170 93 MIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIA 172 (330)
T ss_pred hhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehh
Confidence 899998652 222332222 11100 0 0010 0111221 23455677888888888
Q ss_pred EEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCC------HHHHHHHHHHhhhhHHHHhhcCCCCcee
Q 010501 162 VIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQE------PEEIIHQISETVYPMYKAFIEPDLQTAH 234 (509)
Q Consensus 162 LIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t------~e~Vi~~y~~~V~P~~~~fIeP~k~~AD 234 (509)
+.-.+-+++.|||++.++.. ....+-|+...+.+ .|.+ ....+.+|.+++-.+|-..-..+...++
T Consensus 173 ~AnqPrLLIADEPTN~~e~~-------Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~ 245 (330)
T COG4170 173 LANQPRLLIADEPTNSMEPT-------TQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEE 245 (330)
T ss_pred hccCCceEeccCCCcccCcc-------HHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccccchhH
Confidence 88899999999999999863 12233444444433 3433 2456778888877776654444444444
Q ss_pred EE
Q 010501 235 IK 236 (509)
Q Consensus 235 II 236 (509)
++
T Consensus 246 l~ 247 (330)
T COG4170 246 LV 247 (330)
T ss_pred Hh
Confidence 33
No 429
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.40 E-value=3.4e-07 Score=90.01 Aligned_cols=76 Identities=13% Similarity=0.051 Sum_probs=50.5
Q ss_pred cEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEE
Q 010501 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIK 236 (509)
Q Consensus 160 ~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADII 236 (509)
.-+|+||-.+-.- +.+.-|++||++++.+.|..||..|.... ...+.+++..++..+..-...+...|-+...|-+
T Consensus 121 ~~~Vi~Gr~~~~~-v~~~a~~~ifl~a~~~~Ra~Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i 197 (217)
T TIGR00017 121 DGIIADGRDIGTV-VFPNAEVKIFLDASVEERAKRRYKQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLKKADDAL 197 (217)
T ss_pred CCEEEEEcCcceE-EeCCCCEEEEEECCHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeE
Confidence 3488888863322 33337899999999988776666655432 1456789999888776666666666665554433
No 430
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.38 E-value=6.2e-07 Score=72.39 Aligned_cols=59 Identities=32% Similarity=0.665 Sum_probs=46.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCccccccccCCCCCCCchhhHHHHHHhhccCcceeccccccCCCC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSS 147 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~ 147 (509)
+|+|+|++||||||+++.|...+.......+++
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~----------------------------------------------- 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE----------------------------------------------- 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE-----------------------------------------------
Confidence 478999999999999999998861011111110
Q ss_pred cCCCeeeeecCccEEEEecceeeec----cccCCCCeEEEeec
Q 010501 148 RIGYRTLEVPSSRIVIIEGIYALSE----KLRPLIDLRVSVTG 186 (509)
Q Consensus 148 rsgg~~~~v~~a~VLIVEGi~aL~d----Elr~lLDlkIfVd~ 186 (509)
++|+||.+.+.+ ++.+..|++||+++
T Consensus 34 -------------~~I~eg~~~~~~~~~~~~~~~~d~~Iyld~ 63 (69)
T cd02019 34 -------------IVILEGLYASYKSRDARIRDLADLKIYLDA 63 (69)
T ss_pred -------------EEEecchhhhhhhHHhhccccccEEEEEEe
Confidence 999999999985 68899999999997
No 431
>PRK06762 hypothetical protein; Provisional
Probab=98.37 E-value=2.3e-06 Score=79.19 Aligned_cols=106 Identities=20% Similarity=0.196 Sum_probs=60.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCC-CeeEEEECCccCccccccccCCCCCCCchhhHHHHHHhhccCcceeccccccC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFK 144 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp-~~g~I~~D~y~~~~r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~ 144 (509)
|.+|+|.|++||||||+++.|+..++ ....+.-|.+.. .+...++.+.......+.+.+...
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~---~l~~~~~~~~~~~~~~~~~~~~~~-------------- 64 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRR---DMLRVKDGPGNLSIDLIEQLVRYG-------------- 64 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHH---HhccccCCCCCcCHHHHHHHHHHH--------------
Confidence 45899999999999999999999884 333333333321 111122333333333333222211
Q ss_pred CCCcCCCeeeeecCccEEEEecceee------eccccCCC---CeEEEeecCchHHHHHHHHHH
Q 010501 145 SSSRIGYRTLEVPSSRIVIIEGIYAL------SEKLRPLI---DLRVSVTGGVHFDLVKRVFRD 199 (509)
Q Consensus 145 ~~~rsgg~~~~v~~a~VLIVEGi~aL------~dElr~lL---DlkIfVd~d~dirLiRRI~RD 199 (509)
+.....+|+|+.+.- ..++.... ...||+++|.++++.|...|.
T Consensus 65 -----------~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~ 117 (166)
T PRK06762 65 -----------LGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRP 117 (166)
T ss_pred -----------HhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhccc
Confidence 112356677777532 11233322 378999999988887766665
No 432
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.34 E-value=3.3e-07 Score=87.06 Aligned_cols=161 Identities=19% Similarity=0.213 Sum_probs=90.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccC-----cc---c----ccc-ccCCCCCCCchhhHHHHHH----hh
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND-----SS---R----IID-GNFDDPRLTDYDTLLENIR----GL 130 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~-----~~---r----~i~-~~fq~p~~~d~~tl~e~L~----~L 130 (509)
+|||+|+.||||||+++.|.... +...+..|.... .. . ..+ -+++.....|-..+.+.+- .+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~-~~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~~~ 79 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKY-HFPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPEEL 79 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc-CCeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHHHH
Confidence 58999999999999999998865 345666666521 00 0 011 0111112223222222210 00
Q ss_pred ccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHH
Q 010501 131 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (509)
Q Consensus 131 ~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~V 210 (509)
..-..+..|..-........ +. .....+++++..+++...+...+|..++|+++.++++.|.+.|+ |.+.+++
T Consensus 80 ~~le~ilhP~i~~~i~~~i~-~~--~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~----~~s~~~~ 152 (188)
T TIGR00152 80 KWLNNLLHPLIREWMKKLLA-QF--QSKLAYVLLDVPLLFENKLRSLCDRVIVVDVSPQLQLERLMQRD----NLTEEEV 152 (188)
T ss_pred HHHHHhhCHHHHHHHHHHHH-Hh--hcCCCEEEEEchHhhhCCcHHhCCEEEEEECCHHHHHHHHHHcC----CCCHHHH
Confidence 00012222321111100000 00 01114777887777656788889999999999988877777666 8888888
Q ss_pred HHHHHHhhhhHHHHhhcCCCCceeEEEcCCCC
Q 010501 211 IHQISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (509)
Q Consensus 211 i~~y~~~V~P~~~~fIeP~k~~ADIII~n~~~ 242 (509)
..++... .+.+ ..+..||.+|.|+..
T Consensus 153 ~~r~~~q-~~~~-----~~~~~ad~vI~N~~~ 178 (188)
T TIGR00152 153 QKRLASQ-MDIE-----ERLARADDVIDNSAT 178 (188)
T ss_pred HHHHHhc-CCHH-----HHHHhCCEEEECCCC
Confidence 8877654 3322 235679999987654
No 433
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.34 E-value=2.6e-07 Score=87.09 Aligned_cols=145 Identities=18% Similarity=0.268 Sum_probs=88.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC-ccCccccccccCCCCCCCchhhHHHHHHhhccCcceeccccccCCC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN-YNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 146 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~-y~~~~r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~ 146 (509)
+|.|.|++||||||+++.|++.+. --.++-.. |....+..++.+.+ +..+. -.-|.+|....
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~g-l~~vsaG~iFR~~A~e~gmsl~e------------f~~~A----E~~p~iD~~iD 64 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLG-LKLVSAGTIFREMARERGMSLEE------------FSRYA----EEDPEIDKEID 64 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhC-CceeeccHHHHHHHHHcCCCHHH------------HHHHH----hcCchhhHHHH
Confidence 789999999999999999999982 11222111 22222222222111 01111 12244444443
Q ss_pred CcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhh
Q 010501 147 SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFI 226 (509)
Q Consensus 147 ~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fI 226 (509)
.+ +......+=+|+||-++.+= .+..-|+|||+.++..+|. .|-..+.|.++.++......+.+...++|-
T Consensus 65 ~r----q~e~a~~~nvVlegrLA~Wi-~k~~adlkI~L~Apl~vRa----~Ria~REgi~~~~a~~~~~~RE~se~kRY~ 135 (179)
T COG1102 65 RR----QKELAKEGNVVLEGRLAGWI-VREYADLKIWLKAPLEVRA----ERIAKREGIDVDEALAETVEREESEKKRYK 135 (179)
T ss_pred HH----HHHHHHcCCeEEhhhhHHHH-hccccceEEEEeCcHHHHH----HHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 33 11233356788999988762 1156799999999987654 344444599999998888777776666664
Q ss_pred c------CCCCceeEEEc
Q 010501 227 E------PDLQTAHIKII 238 (509)
Q Consensus 227 e------P~k~~ADIII~ 238 (509)
. -+..-.|++|+
T Consensus 136 ~~YgIDidDlSiyDLVin 153 (179)
T COG1102 136 KIYGIDIDDLSIYDLVIN 153 (179)
T ss_pred HHhCCCCccceeeEEEEe
Confidence 3 34667788886
No 434
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=98.34 E-value=5.4e-09 Score=113.38 Aligned_cols=319 Identities=22% Similarity=0.224 Sum_probs=227.2
Q ss_pred cccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCC-eEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 010501 141 YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID-LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVY 219 (509)
Q Consensus 141 yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLD-lkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~ 219 (509)
+++....+.+.+..+.+..+..+.+|.+.+.-.++.+.- =|. .....++...++....| .++.+...+. .
T Consensus 16 ~~~k~~~~~~~~~~~~p~~~~~~~~~~~~~~igv~~~s~~Gk~-----~~~~~i~~~l~~~~~~~-~~~~v~~ls~---~ 86 (473)
T KOG4203|consen 16 SDFKASSRAGYRTLENPSSRAAIPEGKEPFVIGVAGGTASGKS-----TVCEKIVEQLGAIERDG-RQPQVVLLSQ---D 86 (473)
T ss_pred hhhHHHHHhhhcccCCcccccccccCcceEEEEeecCcccCce-----eehHHHHHHhhhhhhcc-CCCeEEEeec---H
Confidence 444444444444555566667777777777766665541 121 12567777888888888 7766666554 5
Q ss_pred hHHHHhhcCCCCceeEEEcCCCCCCcCCCCcceeeccCCcccHHHHHHHhcccccccccceeeEEEeCCCCCccccccce
Q 010501 220 PMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPPGEDPDACQSYL 299 (509)
Q Consensus 220 P~~~~fIeP~k~~ADIII~n~~~p~~g~~~~~~i~ks~~~~~~~~i~~~l~~~~~~~~~~~~diyl~pp~~~~~~~~~~i 299 (509)
+.|..+..+.+..|+.- ...|++..+++..++.++...-.-...+..-.-.........+..+++.|++++. ..-++
T Consensus 87 ~fY~~lt~~~~~~a~~~-~~~f~~pda~~~~l~~~~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~i--legil 163 (473)
T KOG4203|consen 87 SFYKVLTSEELAKAQEG-KYNFDHPDAFDFELLYLTLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVII--LEGIL 163 (473)
T ss_pred HHHHhhchHHHHHhhhc-cccccCCCCcchhhHHHHHhcccccceeeceeeeeecccCCCCceEEecCCCcee--ehhHH
Confidence 67888888888888877 6688888888877665433332221111111112223344455679999999853 22222
Q ss_pred eeeccCceEEEEeeecccCCCeEeccccceeeceeecccccccCceEEEEEEeccceeecCcEEEEehhhhhcCcceEEE
Q 010501 300 RMRNRDGKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQV 379 (509)
Q Consensus 300 r~r~~~~~~~l~~~~~i~~~~f~~~P~~~f~v~~~~~~gl~~lgy~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (509)
+. |.-.+.+|+....| ..+..++....+.+||+.++|+..+.++.|-.. |-.....-.+++.+++...+|+.
T Consensus 164 ~~------yd~~~~~l~~~k~f-vd~~~d~rla~ri~r~~~~~g~~l~~i~~q~~~-f~kp~~~~~i~p~~~~ad~ii~~ 235 (473)
T KOG4203|consen 164 AF------YDERVRDLFTMKLF-VDTDADVRLARRILRDIVERGRDLESILTQYST-FVKPAFEEFILPTKKYADVIIPR 235 (473)
T ss_pred HH------hHHHHHHHhcceEE-EecCcchhhHHHHhcchhhhcccHHHHHHHHHh-hcCchHHHHhhHHHHhhhheeec
Confidence 22 66667789999999 888899999999999999999999999999888 77788888899999999999999
Q ss_pred ec-cChhHHHHHHhhhc--CccCccchhHHHHHHHhhhcccccCCCh--hhhccccccccccCC--cHHHhhhhhhhhhc
Q 010501 380 QG-RDRLYVKYVGEQLG--LDGSYVPRTYIEQIQLEKLVNDVMALPD--DLKTKLSIDDDLVSS--PKEALSRASADRRT 452 (509)
Q Consensus 380 ~g-~~~~~v~~~~~~l~--~~~~~~~~~y~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 452 (509)
.| .+...+..++..+. ..+++. +|++.++.+|+ +++.++++..+-.+| |.+..+...+ |+
T Consensus 236 ~~~n~vai~l~~~~i~~~L~~~~~~-----------~l~~~~~~l~~t~~i~~~~t~~~~~~Ts~~~~~~~~~~~v--rl 302 (473)
T KOG4203|consen 236 GGDNDVAIDLIVQHILSILAEKSYV-----------RLYNNVLSLPDTNQIKGKLTLLRDHTTSRHPFSFYSDHLV--RL 302 (473)
T ss_pred cccccccceeeehhhhhhhhccccc-----------cccccceecCCccccCCceeEeecCCcCCCCHHHHHHHHH--HH
Confidence 99 44555555555554 344444 88888889888 999999998888776 4444444433 59
Q ss_pred ccccccccccccccccccccccccccccccccCCCCCCCcc
Q 010501 453 KYLSRSISNSFSNQREKNLTKLARVAVNNRRFDGRTPESPA 493 (509)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (509)
+..+.+.++.|...+.+...+++....+.. +...+...|.
T Consensus 303 ~l~~~~~~~p~~~~~i~~~~~~~~~~~~~~-~~i~gv~i~r 342 (473)
T KOG4203|consen 303 VLEHGLGHLPYTEKRIVTPRGLAYSGVNFC-KQICGVSIPR 342 (473)
T ss_pred HhhcccCcccceeeeEecccccchhccccc-chhccCCCCc
Confidence 999999999999999999999999888887 6666665555
No 435
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=98.33 E-value=3.2e-07 Score=100.32 Aligned_cols=159 Identities=14% Similarity=0.153 Sum_probs=103.0
Q ss_pred eeeEEEe-C-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC-CeeEEEECCccCccccccccCCCCC-
Q 010501 41 DTLSFEK-G-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNYNDSSRIIDGNFDDPR- 116 (509)
Q Consensus 41 ~~lsf~~-g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp-~~g~I~~D~y~~~~r~i~~~fq~p~- 116 (509)
+++++.. . ...+++++||.++.|. -+.|+||||||||+|+|.|+++.| ..|.+.+-.... .+.+-+++|-|-
T Consensus 437 e~v~l~tPt~g~~lie~Ls~~V~~g~---~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~-~~~lfflPQrPYm 512 (659)
T KOG0060|consen 437 EEVSLSTPTNGDLLIENLSLEVPSGQ---NLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG-PKDLFFLPQRPYM 512 (659)
T ss_pred eeeeecCCCCCceeeeeeeeEecCCC---eEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC-CCceEEecCCCCc
Confidence 4455533 2 4568899999999999 999999999999999999999997 567765422110 011222333321
Q ss_pred ---------------------CCchhhHHHHHHhhccCc-----ceecc--ccccCCCCcCCCeeeeecCccEEEEecce
Q 010501 117 ---------------------LTDYDTLLENIRGLKEGK-----AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGIY 168 (509)
Q Consensus 117 ---------------------~~d~~tl~e~L~~L~~g~-----~i~~P--~yD~~~~~rsgg~~~~v~~a~VLIVEGi~ 168 (509)
..+.+.+.+.|...+-+. ...-+ .+||. ...|+|+.|+++-|+++.-.+.+
T Consensus 513 t~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~-dvLS~GEqQRLa~ARLfy~kPk~ 591 (659)
T KOG0060|consen 513 TLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWM-DVLSPGEQQRLAFARLFYHKPKF 591 (659)
T ss_pred cccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHH-hhcCHHHHHHHHHHHHHhcCCce
Confidence 111222222222211111 11111 23332 46789999999999999999999
Q ss_pred eeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHH
Q 010501 169 ALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (509)
Q Consensus 169 aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y 214 (509)
|++||-+..++. ....++-|-.++-|.|...|=|+.
T Consensus 592 AiLDE~TSAv~~----------dvE~~~Yr~~r~~giT~iSVgHRk 627 (659)
T KOG0060|consen 592 AILDECTSAVTE----------DVEGALYRKCREMGITFISVGHRK 627 (659)
T ss_pred EEeechhhhccH----------HHHHHHHHHHHHcCCeEEEeccHH
Confidence 999998877764 345667777788898876665554
No 436
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=98.29 E-value=4.2e-07 Score=87.02 Aligned_cols=159 Identities=21% Similarity=0.254 Sum_probs=86.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcc----Cc-c-------cccc-ccCCCCCCCchhhHHHHHHh----
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----DS-S-------RIID-GNFDDPRLTDYDTLLENIRG---- 129 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~----~~-~-------r~i~-~~fq~p~~~d~~tl~e~L~~---- 129 (509)
++|||+|+-||||||+++.|.. + +.-++..|... .. . ...+ -+++.....|...+.+.+-.
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~-G~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~~~ 78 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-L-GFPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDPEK 78 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-T-T-EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-C-CCCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCHHH
Confidence 4899999999999999999988 4 55677776641 00 0 0011 12222233444433333210
Q ss_pred hccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHH
Q 010501 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (509)
Q Consensus 130 L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~ 209 (509)
++.-..+..|......... .......+++++|-.+++-......+|..|+|++|.++++.|-+.|| |.+.++
T Consensus 79 ~~~L~~iihP~I~~~~~~~----~~~~~~~~~~v~e~pLL~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~----~~~~~~ 150 (180)
T PF01121_consen 79 LKKLENIIHPLIREEIEKF----IKRNKSEKVVVVEIPLLFESGLEKLCDEVIVVYAPEEIRIKRLMERD----GLSEEE 150 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHCHSTSEEEEE-TTTTTTTGGGGSSEEEEEE--HHHHHHHHHHHH----TSTHHH
T ss_pred HHHHHHHHhHHHHHHHHHH----HHhccCCCEEEEEcchhhhhhHhhhhceEEEEECCHHHHHHHHHhhC----CCcHHH
Confidence 1111122233211110000 00112227899999998877788889999999999887665555554 999998
Q ss_pred HHHHHHHhhhhHHHHhhcCCCCceeEEEcCCC
Q 010501 210 IIHQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (509)
Q Consensus 210 Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~~ 241 (509)
+....... .|..++ ++.||++|.|+.
T Consensus 151 ~~~ri~~Q-~~~~~k-----~~~ad~vI~N~g 176 (180)
T PF01121_consen 151 AEARIASQ-MPDEEK-----RKRADFVIDNNG 176 (180)
T ss_dssp HHHHHHTS---HHHH-----HHH-SEEEE-SS
T ss_pred HHHHHHhC-CCHHHH-----HHhCCEEEECCC
Confidence 87766433 444332 256999998764
No 437
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=98.28 E-value=1.6e-06 Score=84.80 Aligned_cols=159 Identities=11% Similarity=0.117 Sum_probs=87.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccC----cc---c----cccc-cCCCCCCCchhhHHHHHHh----
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND----SS---R----IIDG-NFDDPRLTDYDTLLENIRG---- 129 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~----~~---r----~i~~-~fq~p~~~d~~tl~e~L~~---- 129 (509)
|++|||+|+.||||||+++.+...+ +...+..|.... .. . ..+- +++ ...+|-..+.+.+-.
T Consensus 6 ~~~IglTG~iGsGKStv~~~l~~~l-g~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~-~g~idR~~L~~~vF~d~~~ 83 (204)
T PRK14733 6 TYPIGITGGIASGKSTATRILKEKL-NLNVVCADTISREITKKPSVIKKIAEKFGDEIVM-NKQINRAMLRAIITESKEA 83 (204)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHc-CCeEEeccHHHHHHHCchHHHHHHHHHhCHHhcc-CCCcCHHHHHHHHhCCHHH
Confidence 6799999999999999999998766 233555554411 00 0 0110 111 123443333333211
Q ss_pred hccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccc--cCCCCeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL--RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 130 L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dEl--r~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
+..-..+..|.......... ......++++|-.+++-... ...+|..++|++|.+.+..|-+ .++|.+.
T Consensus 84 ~~~Le~i~HP~V~~~~~~~~-----~~~~~~~vv~eipLL~E~~~~~~~~~D~vi~V~a~~e~ri~Rl~----~Rd~~s~ 154 (204)
T PRK14733 84 KKWLEDYLHPVINKEIKKQV-----KESDTVMTIVDIPLLGPYNFRHYDYLKKVIVIKADLETRIRRLM----ERDGKNR 154 (204)
T ss_pred HHHHHhhhhHHHHHHHHHHH-----HhcCCCeEEEEechhhhccCchhhhCCEEEEEECCHHHHHHHHH----HcCCCCH
Confidence 01111233332211111000 00123578888877764332 4578999999999877654433 3458888
Q ss_pred HHHHHHHHHhhhhHHHHhhcCCCCceeEEEcCCC
Q 010501 208 EEIIHQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (509)
Q Consensus 208 e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~~ 241 (509)
+++....... .|..+ -++.||++|.|+.
T Consensus 155 ~~a~~ri~~Q-~~~ee-----k~~~aD~VI~N~g 182 (204)
T PRK14733 155 QQAVAFINLQ-ISDKE-----REKIADFVIDNTE 182 (204)
T ss_pred HHHHHHHHhC-CCHHH-----HHHhCCEEEECcC
Confidence 8877766443 33222 2477999998765
No 438
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.27 E-value=5.1e-06 Score=77.80 Aligned_cols=27 Identities=33% Similarity=0.464 Sum_probs=23.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCee
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIA 94 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g 94 (509)
+++|+||||||||||++.|+..++..+
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~~~ 29 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAGDP 29 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCcCC
Confidence 899999999999999999999884333
No 439
>PRK14737 gmk guanylate kinase; Provisional
Probab=98.26 E-value=1.5e-06 Score=83.47 Aligned_cols=155 Identities=14% Similarity=0.150 Sum_probs=77.0
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCcc--c-----cccccCCCCCCCchhhHHHHHHhhccCccee
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS--R-----IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQ 137 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~--r-----~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~ 137 (509)
++.+|.|+||||||||||++.|....|... ... .+ -++ + ...|.| ... .+.-..+..+.-++
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~-~~v-~~-TTR~~r~gE~~G~dY~f-----vs~---~~F~~~i~~~~f~e 71 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDFL-FSI-SC-TTRAPRPGDEEGKTYFF-----LTI---EEFKKGIADGEFLE 71 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCccc-ccc-Cc-cCCCCCCCCCCCceeEe-----CCH---HHHHHHHHcCCeEE
Confidence 356999999999999999999988775421 111 11 111 1 111222 122 22223344455555
Q ss_pred ccccccCC-CCcCCCeeeeecCccEEEEecceeeeccccCCC-C--eEEEeecCchHHHHHHHHHHHHHcCC-CHHHHHH
Q 010501 138 VPIYDFKS-SSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI-D--LRVSVTGGVHFDLVKRVFRDIQRVGQ-EPEEIIH 212 (509)
Q Consensus 138 ~P~yD~~~-~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lL-D--lkIfVd~d~dirLiRRI~RD~~erG~-t~e~Vi~ 212 (509)
.-.|.-.. +.....-...+...+++|++-..-....++..+ + +.||+.++....+..|+. .||. +.+++..
T Consensus 72 ~~~~~g~~YGt~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~----~R~~~s~e~i~~ 147 (186)
T PRK14737 72 WAEVHDNYYGTPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLI----HRGTDSEESIEK 147 (186)
T ss_pred EEEECCeeecCcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHH----hcCCCCHHHHHH
Confidence 44333211 111100011234456677664333322333322 2 589999876444555443 4565 4444444
Q ss_pred HHHHhhhhHHHHhhcCCCCceeEEEcCC
Q 010501 213 QISETVYPMYKAFIEPDLQTAHIKIINK 240 (509)
Q Consensus 213 ~y~~~V~P~~~~fIeP~k~~ADIII~n~ 240 (509)
+.. ...+. . .....+|.+|.|+
T Consensus 148 Rl~-~~~~e-~----~~~~~~D~vI~N~ 169 (186)
T PRK14737 148 RIE-NGIIE-L----DEANEFDYKIIND 169 (186)
T ss_pred HHH-HHHHH-H----hhhccCCEEEECc
Confidence 443 33322 1 1246789999876
No 440
>COG1437 CyaB Adenylate cyclase, class 2 (thermophilic) [Nucleotide transport and metabolism]
Probab=98.25 E-value=1e-05 Score=77.23 Aligned_cols=148 Identities=24% Similarity=0.346 Sum_probs=118.7
Q ss_pred HHHHHHHhcccc--cccccceeeEEEeCCCCCccccccceeee-ccCceEEEEeeecccCCCeEeccccceeec--eeec
Q 010501 262 VDEIKAVMSKEH--TETTEETYDIYLLPPGEDPDACQSYLRMR-NRDGKYNLMFEEWVTDSPFIISPRITFEVS--VRLL 336 (509)
Q Consensus 262 ~~~i~~~l~~~~--~~~~~~~~diyl~pp~~~~~~~~~~ir~r-~~~~~~~l~~~~~i~~~~f~~~P~~~f~v~--~~~~ 336 (509)
...|.+.|.+.. ........|+|+.-|.-+.+.....+|.| ..+|.+.+-.--+..|.+..++=-++|+|+ ..+.
T Consensus 13 ~e~i~~~l~~~~~~~~~~e~q~DiYf~~p~rdf~~tdealRiR~~~~~~~~lTYKgp~ld~~~k~r~E~E~~v~D~~~~~ 92 (178)
T COG1437 13 LEEIRERLASLGAKFIKEEEQEDIYFDHPCRDFADTDEALRIRRINGGEVFLTYKGPKLDRESKTREEIEIEVSDVEKAL 92 (178)
T ss_pred HHHHHHHHHhccccccceeeeeeeeeecCCcchhcCcceeEEEEecCCcEEEEEecccccccccceeeEEEEeCCHHHHH
Confidence 456677776653 34455667999999988888888899999 667888888888999999877777777776 2333
Q ss_pred ccccccCceEEEEEEeccceeecCcEEEEehhhhhcCcceEEEecc---------ChhHHHHHHhhhcCc-cCccchhHH
Q 010501 337 GGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGR---------DRLYVKYVGEQLGLD-GSYVPRTYI 406 (509)
Q Consensus 337 ~gl~~lgy~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---------~~~~v~~~~~~l~~~-~~~~~~~y~ 406 (509)
-=|-.||+..+..++....+|..|++.|++|.+++|+. |+-|-=. .++.+-+.+.+|||. +.-+++||+
T Consensus 93 ~il~~LGF~~~~~VkK~R~iY~~~~~~i~lD~VegLG~-F~EIE~~~~d~~e~~~~~~~~~~i~~~lGl~~~~~~r~sYl 171 (178)
T COG1437 93 EILKRLGFKEVAVVKKTREIYKVGNVTIELDAVEGLGD-FLEIEVMVDDENEIDGAKEEIEEIARQLGLKEEDLERRSYL 171 (178)
T ss_pred HHHHHcCCceeeEEEEEEEEEeeCCEEEEEecccCCcc-cEEEEEecCCchhhHHHHHHHHHHHHHhCCChhcccchhHH
Confidence 34588999999999999999999999999999999984 7766432 235688899999997 999999999
Q ss_pred HHHH
Q 010501 407 EQIQ 410 (509)
Q Consensus 407 ~~~~ 410 (509)
|++.
T Consensus 172 ELl~ 175 (178)
T COG1437 172 ELLL 175 (178)
T ss_pred HHHh
Confidence 8873
No 441
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.24 E-value=4e-06 Score=78.32 Aligned_cols=25 Identities=36% Similarity=0.713 Sum_probs=23.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPS 92 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~ 92 (509)
+|+|.||||||||||++.|++.++.
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 8999999999999999999998753
No 442
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=98.22 E-value=5e-07 Score=98.21 Aligned_cols=134 Identities=14% Similarity=0.191 Sum_probs=84.4
Q ss_pred eeeeEEEeCcE-EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc---ccc--cccC
Q 010501 40 EDTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS---RII--DGNF 112 (509)
Q Consensus 40 ~~~lsf~~g~~-~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~---r~i--~~~f 112 (509)
..+++|.+... .+.++++|-+..+. .|+++||||+|||||++.+.+.+ |..|.++-.....-. ... ...+
T Consensus 392 ~~nv~F~y~~~~~iy~~l~fgid~~s---rvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~~~~y~Qh~~e~ldl 468 (614)
T KOG0927|consen 392 VQNVSFGYSDNPMIYKKLNFGIDLDS---RVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNKLPRYNQHLAEQLDL 468 (614)
T ss_pred EeccccCCCCcchhhhhhhcccCccc---ceeEecCCCCchhhhHHHHhhccccccccccccccccchhhhhhhHhhcCc
Confidence 46677766543 68999999999999 99999999999999999999998 887877654321111 000 0000
Q ss_pred C----------CCCCCchhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 113 D----------DPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 113 q----------~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
+ .++....+.++..|..+. .....-+..-.+.|.|++.++.-+...+--+.++++|||++.+|+
T Consensus 469 ~~s~le~~~~~~~~~~~~e~~r~ilgrfg----Ltgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi 542 (614)
T KOG0927|consen 469 DKSSLEFMMPKFPDEKELEEMRSILGRFG----LTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDI 542 (614)
T ss_pred chhHHHHHHHhccccchHHHHHHHHHHhC----CCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCc
Confidence 0 010111112222221111 111111222245677888888877788888888889999999997
No 443
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=98.21 E-value=1.5e-06 Score=92.34 Aligned_cols=163 Identities=17% Similarity=0.175 Sum_probs=98.4
Q ss_pred ceeeeceeeeeee-----EEE----eCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC---------CC
Q 010501 31 SDRYEIVPIEDTL-----SFE----KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---------PS 92 (509)
Q Consensus 31 s~~~~~~~i~~~l-----sf~----~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll---------p~ 92 (509)
...++++.+++++ +|. .....+++++||.++.|+ ++.|.|+|||||||++++|++.. |+
T Consensus 368 aS~ld~~~lp~e~~~IleSFGv~~r~ieryvlr~vNL~ikpGd---vvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~ 444 (593)
T COG2401 368 ASELDIKGLPNEFQDILESFGVRQRVIERYVLRNLNLEIKPGD---VVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPD 444 (593)
T ss_pred eeeeecccCChHHHHHHHHhcchheeeeeeeeeceeeEecCCC---eEEEEecCCCCcchHHHHHHHHhhcccccccCCC
Confidence 3445666666553 333 345679999999999999 99999999999999999999975 34
Q ss_pred eeEEEECCccCccccccccC--CCCCCCchhhHHHHHHhhc-----------cCcceeccccccCCCCcCCCeeeeecCc
Q 010501 93 IAVITMDNYNDSSRIIDGNF--DDPRLTDYDTLLENIRGLK-----------EGKAVQVPIYDFKSSSRIGYRTLEVPSS 159 (509)
Q Consensus 93 ~g~I~~D~y~~~~r~i~~~f--q~p~~~d~~tl~e~L~~L~-----------~g~~i~~P~yD~~~~~rsgg~~~~v~~a 159 (509)
+|.+.+---. .-+..+ .+| .++..++.+++..-. .-.....-.|-......|.|+..+...+
T Consensus 445 sg~v~vp~nt----~~a~iPge~Ep-~f~~~tilehl~s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLA 519 (593)
T COG2401 445 SGKVEVPKNT----VSALIPGEYEP-EFGEVTILEHLRSKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLA 519 (593)
T ss_pred CCceeccccc----hhhccCccccc-ccCchhHHHHHhhccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHH
Confidence 4544432110 011111 122 233445555553311 1111111234444556777888777777
Q ss_pred cEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 160 ~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
+.+-=-+..++.||..+++|.. ...+..|.+.+-.++.|.|+
T Consensus 520 kllaerpn~~~iDEF~AhLD~~------TA~rVArkiselaRe~giTl 561 (593)
T COG2401 520 KLLAERPNVLLIDEFAAHLDEL------TAVRVARKISELAREAGITL 561 (593)
T ss_pred HHHhcCCCcEEhhhhhhhcCHH------HHHHHHHHHHHHHHHhCCeE
Confidence 7665555677779988888863 23455555555555566654
No 444
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.21 E-value=4.6e-06 Score=76.76 Aligned_cols=75 Identities=15% Similarity=0.135 Sum_probs=44.4
Q ss_pred cEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhc---C---CCCce
Q 010501 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIE---P---DLQTA 233 (509)
Q Consensus 160 ~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIe---P---~k~~A 233 (509)
..+|+||.+..+ .+....|+.|||++|.+++..|... +.|.+.+++..++........+.|.. + ....-
T Consensus 75 ~~~Vi~g~~~~~-~~~~~~d~~v~v~a~~~~r~~R~~~----R~~~s~~~a~~~~~~~d~~~~~~~~~~~~~~~~~~~~y 149 (171)
T TIGR02173 75 KNVVLESRLAGW-IVREYADVKIWLKAPLEVRARRIAK----REGKSLTVARSETIEREESEKRRYLKFYGIDIDDLSIY 149 (171)
T ss_pred CCEEEEecccce-eecCCcCEEEEEECCHHHHHHHHHH----ccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCccccccc
Confidence 456678876532 1244578999999998876544333 34788888777766554443333322 2 22334
Q ss_pred eEEEcC
Q 010501 234 HIKIIN 239 (509)
Q Consensus 234 DIII~n 239 (509)
|++|+.
T Consensus 150 dl~i~t 155 (171)
T TIGR02173 150 DLVINT 155 (171)
T ss_pred cEEEEC
Confidence 777753
No 445
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.20 E-value=4.6e-06 Score=95.04 Aligned_cols=73 Identities=11% Similarity=0.114 Sum_probs=56.7
Q ss_pred EEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEc
Q 010501 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (509)
Q Consensus 161 VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~ 238 (509)
=+|+||--+..- +.+-.|+|||++++.++|-.||..+... .+.+++++....+..-.. +.+.|-+...|.++.
T Consensus 139 ~~v~eGRdigtv-v~p~a~~K~~l~A~~~~Ra~Rr~~~~~~---~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~da~~i 211 (712)
T PRK09518 139 GIVAEGRDITTV-VAPDAEVRILLTAREEVRQARRSGQDRS---ETPGVVLEDVAARDEADS-KVTSFLSAADGVTTL 211 (712)
T ss_pred cEEEecCccceE-EecCCCeEEEEECCHHHHHHHHHHhhhc---CCHHHHHHHHHHHhhhcc-cccCCCCCCCCeEEE
Confidence 488898766431 2233699999999999998888777643 889999999999998888 999997766664443
No 446
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=98.20 E-value=2.3e-06 Score=82.67 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=69.0
Q ss_pred eeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeE---E-EECCcc---CccccccccCCCCCCCchhh--H
Q 010501 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAV---I-TMDNYN---DSSRIIDGNFDDPRLTDYDT--L 123 (509)
Q Consensus 54 k~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~---I-~~D~y~---~~~r~i~~~fq~p~~~d~~t--l 123 (509)
+++++.+.+ . +.+|+|+||||||||+.+|.-.+ +.... - .++++. .....+...|++...++... .
T Consensus 13 ~~~~l~f~~-g---l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~ 88 (198)
T cd03276 13 RHLQIEFGP-R---VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDANPLCVL 88 (198)
T ss_pred eeeEEecCC-C---eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccCCcCCHH
Confidence 445555444 3 78999999999999999997655 21110 0 111111 01122344444433332100 1
Q ss_pred -HHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEE----EEecceeeeccccCCCCe
Q 010501 124 -LENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIV----IIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 124 -~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VL----IVEGi~aL~dElr~lLDl 180 (509)
.+.+..+.+. -...+......|+|+.+++..+.++ +.++.+++.|||...+|.
T Consensus 89 ~~~~~~~~l~~----~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~ 146 (198)
T cd03276 89 SQDMARSFLTS----NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDM 146 (198)
T ss_pred HHHHHHHHhcc----ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCH
Confidence 1223222221 1223444567788888888888877 579999999999999997
No 447
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.19 E-value=4.9e-06 Score=90.75 Aligned_cols=145 Identities=18% Similarity=0.182 Sum_probs=109.8
Q ss_pred EeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc--------ccccccCCC---CCCCc
Q 010501 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS--------RIIDGNFDD---PRLTD 119 (509)
Q Consensus 52 iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~--------r~i~~~fq~---p~~~d 119 (509)
.++++||.+.+|| |+||+|--|||+|-|+++|.+.- +..|.|.+||..... ..++|++.+ ...+.
T Consensus 274 ~~~dvSf~vr~GE---IlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l 350 (500)
T COG1129 274 KVRDVSFTVRAGE---ILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVL 350 (500)
T ss_pred ceeCceeEEeCCc---EEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcC
Confidence 5789999999999 99999999999999999999976 578999999984321 234555543 23344
Q ss_pred hhhHHHHHHhh--c---------------------cCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 120 YDTLLENIRGL--K---------------------EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 120 ~~tl~e~L~~L--~---------------------~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
...+.+|+... . ..-.+..|..+.....+|||.+|++-.++.+..++.+++.|||+.
T Consensus 351 ~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTR 430 (500)
T COG1129 351 DMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTR 430 (500)
T ss_pred CCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCc
Confidence 44455554221 1 111344556666667889999999999999999999999999999
Q ss_pred CCCeEEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 177 LIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 177 lLDlkIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
.+|+- .-.-+-++.|++...|.+
T Consensus 431 GIDVG-------AK~eIy~li~~lA~~G~a 453 (500)
T COG1129 431 GIDVG-------AKAEIYRLIRELAAEGKA 453 (500)
T ss_pred Ccccc-------hHHHHHHHHHHHHHCCCE
Confidence 99983 345677888888888865
No 448
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.17 E-value=9.5e-06 Score=77.49 Aligned_cols=28 Identities=36% Similarity=0.679 Sum_probs=25.5
Q ss_pred ecCCccEEEEEECCCCCcHHHHHHHHHhhCC
Q 010501 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (509)
Q Consensus 61 ~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp 91 (509)
++|+ +|+|+||||||||||+++|++.++
T Consensus 3 ~~g~---~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGL---LIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCC---EEEEECCCCCCHHHHHHHHHhhCc
Confidence 4677 999999999999999999999875
No 449
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.17 E-value=3.1e-06 Score=84.89 Aligned_cols=71 Identities=20% Similarity=0.222 Sum_probs=51.2
Q ss_pred cEEEEecceeeeccc-cCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEc
Q 010501 160 RIVIIEGIYALSEKL-RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (509)
Q Consensus 160 ~VLIVEGi~aL~dEl-r~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~ 238 (509)
.++++|..+++-... ...+|..|+|+++.++++.|-+. ++|.+.+++..+..... |.. -.+..||++|.
T Consensus 118 ~~vv~evPLL~E~~~~~~~~D~iv~V~a~~e~ri~RL~~----R~g~s~eea~~Ri~~Q~-~~~-----ek~~~aD~VI~ 187 (244)
T PTZ00451 118 LIVVLDAPTLFETKTFTYFVSASVVVSCSEERQIERLRK----RNGFSKEEALQRIGSQM-PLE-----EKRRLADYIIE 187 (244)
T ss_pred CEEEEEechhhccCchhhcCCeEEEEECCHHHHHHHHHH----cCCCCHHHHHHHHHhCC-CHH-----HHHHhCCEEEE
Confidence 589999999887554 45789999999998876554332 25888888888775533 322 23678999998
Q ss_pred CC
Q 010501 239 NK 240 (509)
Q Consensus 239 n~ 240 (509)
|+
T Consensus 188 N~ 189 (244)
T PTZ00451 188 ND 189 (244)
T ss_pred CC
Confidence 76
No 450
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=98.17 E-value=8.3e-07 Score=88.15 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=29.9
Q ss_pred CCCCcCCCeeeeecCccEEEE----ecceeeeccccCCCCe
Q 010501 144 KSSSRIGYRTLEVPSSRIVII----EGIYALSEKLRPLIDL 180 (509)
Q Consensus 144 ~~~~rsgg~~~~v~~a~VLIV----EGi~aL~dElr~lLDl 180 (509)
.....++|+.+++..++++.. .+.+++.|||...+|.
T Consensus 163 ~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~ 203 (251)
T cd03273 163 SLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDL 203 (251)
T ss_pred cccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCH
Confidence 345678888999998887753 5588889999999997
No 451
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.15 E-value=4.3e-06 Score=82.48 Aligned_cols=78 Identities=13% Similarity=0.111 Sum_probs=51.1
Q ss_pred cEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHc--CCCHHHHHHHHHHhhhhHHHHhhcCCCCcee-EE
Q 010501 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV--GQEPEEIIHQISETVYPMYKAFIEPDLQTAH-IK 236 (509)
Q Consensus 160 ~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er--G~t~e~Vi~~y~~~V~P~~~~fIeP~k~~AD-II 236 (509)
.-+|++|-.+- +.+....+++||++++.+.|..||..+ ...+ +.+.+++.+....+.+-...+++.|-+..+| ++
T Consensus 123 ~~~Vi~GR~~~-~~vl~~a~~~ifl~a~~e~R~~Rr~~~-~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~ 200 (225)
T PRK00023 123 PGLVMDGRDIG-TVVFPDAELKIFLTASAEERAERRYKE-LQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALL 200 (225)
T ss_pred CCEEEEecChh-eEEeCCCCEEEEEECCHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEE
Confidence 35788887521 223333799999999998875554444 3333 4567777777777766555667788777776 66
Q ss_pred EcC
Q 010501 237 IIN 239 (509)
Q Consensus 237 I~n 239 (509)
|++
T Consensus 201 IDT 203 (225)
T PRK00023 201 LDT 203 (225)
T ss_pred EEC
Confidence 653
No 452
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.12 E-value=2.3e-06 Score=91.23 Aligned_cols=255 Identities=18% Similarity=0.221 Sum_probs=126.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccC-----cc---c----ccc-ccCCCCCCCchhhHHHHHHh----
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND-----SS---R----IID-GNFDDPRLTDYDTLLENIRG---- 129 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~-----~~---r----~i~-~~fq~p~~~d~~tl~e~L~~---- 129 (509)
..|||+|+.||||||+++.|.. + +.-.|..|.... .. . ..+ .+.+....+|...+.+.+-.
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~-G~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~~~ 79 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-L-GAVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADDEA 79 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-C-CCeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCHHH
Confidence 4799999999999999999987 4 445666665411 00 0 011 11222233444443333211
Q ss_pred hccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeee-ccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHH
Q 010501 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (509)
Q Consensus 130 L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~-dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e 208 (509)
+..-..+..|..-.... +.........+++++.-+|. ......+|..|||++|.+.++.| ...++|.+.+
T Consensus 80 ~~~le~i~hP~I~~~i~-----~~i~~~~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri~R----l~~rRg~s~~ 150 (395)
T PRK03333 80 RAVLNGIVHPLVGARRA-----ELIAAAPEDAVVVEDIPLLVESGMAPLFHLVVVVDADVEVRVRR----LVEQRGMAEA 150 (395)
T ss_pred HHHHHHhhhHHHHHHHH-----HHHHhcCCCCEEEEEeeeeecCCchhhCCEEEEEECCHHHHHHH----HHhcCCCCHH
Confidence 00011122231110000 00011122344555555555 57788999999999998876533 3335899988
Q ss_pred HHHHHHHHhhhhHHHHhhcCCCCceeEEEcCCCCCCcCCCCcceeeccCCcccHHHHHHHhcccccccccceeeEEEeCC
Q 010501 209 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMSKEHTETTEETYDIYLLPP 288 (509)
Q Consensus 209 ~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~~~p~~g~~~~~~i~ks~~~~~~~~i~~~l~~~~~~~~~~~~diyl~pp 288 (509)
++...+..... .++.+..||++|.|+.++.. +.+....+.-.-...++.+........+..|-+.|.
T Consensus 151 ~a~~ri~~Q~~------~e~k~~~AD~vIdN~~s~e~-------l~~~v~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~y 217 (395)
T PRK03333 151 DARARIAAQAS------DEQRRAVADVWLDNSGTPDE-------LVEAVRALWADRLLPFAHNLRARRRAARAPPRLVPA 217 (395)
T ss_pred HHHHHHHhcCC------hHHHHHhCCEEEECCCCHHH-------HHHHHHHHHHHHHhhHHHHHhcCCCCCCCCceEeCC
Confidence 88777654422 22236789999987654321 111111112222223334444444445566888887
Q ss_pred CCCccccccceeeecc----CceEEEEeeec-ccCCC-eEeccccceeeceeec-------ccccccCceEE
Q 010501 289 GEDPDACQSYLRMRNR----DGKYNLMFEEW-VTDSP-FIISPRITFEVSVRLL-------GGLMALGYTIA 347 (509)
Q Consensus 289 ~~~~~~~~~~ir~r~~----~~~~~l~~~~~-i~~~~-f~~~P~~~f~v~~~~~-------~gl~~lgy~~~ 347 (509)
++.=+. .+-+.+.. -|-..+-|++- =+-.| -.-.|-||..|+|.-+ ..|.++||+..
T Consensus 218 dp~W~~--~f~~e~~~l~~~l~~~~~~IeHIGSTsVpGl~AKPiIDI~v~V~~~~~~~~~~~~l~~~Gy~~~ 287 (395)
T PRK03333 218 DPSWPA--QAQRIVARLKTAAGHKALRVDHIGSTAVPGLDAKDVIDIQVTVESLAVADELAEPLAAAGFPRL 287 (395)
T ss_pred CCCcHH--HHHHHHHHHHHhcCccceEEEEeccCCCCCCccCCeeeEEEeeCChHHHHHHHHHHHHCCCccc
Confidence 665221 11111111 13333333321 00111 1256667776666543 36677888753
No 453
>PRK01184 hypothetical protein; Provisional
Probab=98.10 E-value=5.2e-06 Score=78.19 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=43.2
Q ss_pred ccEEEEecceeee--ccccCCCC---eEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCce
Q 010501 159 SRIVIIEGIYALS--EKLRPLID---LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTA 233 (509)
Q Consensus 159 a~VLIVEGi~aL~--dElr~lLD---lkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~A 233 (509)
..++++||...+. +.++..++ ..|+|+++.+.+..|-..|+-...+.+.+++..+........ +.+....|
T Consensus 80 ~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~~~~----~~~~~~~a 155 (184)
T PRK01184 80 DEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDERELSWG----IGEVIALA 155 (184)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHhccC----HHHHHHhc
Confidence 4788999984322 23334444 889999998886655443321111234444444433221111 22233679
Q ss_pred eEEEcCCCC
Q 010501 234 HIKIINKFN 242 (509)
Q Consensus 234 DIII~n~~~ 242 (509)
|++|.|+.+
T Consensus 156 d~vI~N~~~ 164 (184)
T PRK01184 156 DYMIVNDST 164 (184)
T ss_pred CEEEeCCCC
Confidence 999976543
No 454
>PLN02422 dephospho-CoA kinase
Probab=98.10 E-value=4e-06 Score=83.52 Aligned_cols=161 Identities=17% Similarity=0.133 Sum_probs=90.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccC-----cc---c----cccc-cCCCCCCCchhhHHHHHHh----h
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND-----SS---R----IIDG-NFDDPRLTDYDTLLENIRG----L 130 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~-----~~---r----~i~~-~fq~p~~~d~~tl~e~L~~----L 130 (509)
+|||.|+.||||||+++.|.. + +...|..|.... .. . ..+- .++....+|-..+.+.+-. +
T Consensus 3 ~igltG~igsGKstv~~~l~~-~-g~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~~~~ 80 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFKS-S-GIPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDPSKR 80 (232)
T ss_pred EEEEECCCCCCHHHHHHHHHH-C-CCeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCHHHH
Confidence 799999999999999999985 3 445666665411 00 0 1111 2222233444333333210 1
Q ss_pred ccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHH
Q 010501 131 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (509)
Q Consensus 131 ~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~V 210 (509)
..-..+..|..-........ ........++++|-.+++-......+|..|+|++|.+.+..|-+.| +|.+.+++
T Consensus 81 ~~Le~IlHP~V~~~~~~~~~--~~~~~~~~~vv~eipLL~E~~~~~~~D~vI~V~a~~e~ri~RL~~R----~g~s~eea 154 (232)
T PLN02422 81 QLLNRLLAPYISSGIFWEIL--KLWLKGCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQLERLMAR----DGLSEEQA 154 (232)
T ss_pred HHHHHHhhHHHHHHHHHHHH--HHHhcCCCEEEEEehhhhhcchhhhCCEEEEEECCHHHHHHHHHHc----CCCCHHHH
Confidence 11122333321110000000 0001123689999999887677778999999999988865544444 37888887
Q ss_pred HHHHHHhhhhHHHHhhcCCCCceeEEEcCCCC
Q 010501 211 IHQISETVYPMYKAFIEPDLQTAHIKIINKFN 242 (509)
Q Consensus 211 i~~y~~~V~P~~~~fIeP~k~~ADIII~n~~~ 242 (509)
..+.. .-.|... -...||++|.|+.+
T Consensus 155 ~~Ri~-~Q~~~ee-----k~~~AD~VI~N~gs 180 (232)
T PLN02422 155 RNRIN-AQMPLDW-----KRSKADIVIDNSGS 180 (232)
T ss_pred HHHHH-HcCChhH-----HHhhCCEEEECCCC
Confidence 76653 3333322 25779999987654
No 455
>PRK04182 cytidylate kinase; Provisional
Probab=98.09 E-value=1.5e-05 Score=73.80 Aligned_cols=23 Identities=26% Similarity=0.632 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
+|+|+|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 79999999999999999999887
No 456
>PRK04040 adenylate kinase; Provisional
Probab=98.08 E-value=8.8e-06 Score=78.26 Aligned_cols=154 Identities=17% Similarity=0.099 Sum_probs=78.8
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCC-CeeEEEECCccCcc-ccccccC--CCCCCCchhhHHHHHHhhccCcceecccc
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNYNDSS-RIIDGNF--DDPRLTDYDTLLENIRGLKEGKAVQVPIY 141 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp-~~g~I~~D~y~~~~-r~i~~~f--q~p~~~d~~tl~e~L~~L~~g~~i~~P~y 141 (509)
+.+|+|.|.+||||||+++.|+..++ ....+.++++.... ...++.. ++...++. ...+.+..+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~-~~~~~~~~~a---------- 70 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPP-EEQKELQREA---------- 70 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHHHcCCCCCHHHHhhCCh-hhhHHHHHHH----------
Confidence 45899999999999999999999986 55667776653211 0011100 00000000 0000010000
Q ss_pred ccCCCCcCCCeeeeecCccEEEEecceeee-cc------c----c-CCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHH
Q 010501 142 DFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EK------L----R-PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEE 209 (509)
Q Consensus 142 D~~~~~rsgg~~~~v~~a~VLIVEGi~aL~-dE------l----r-~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~ 209 (509)
... .........+|+||.+++. ++ + . -..|..|+++++.+..+.||+....+.|+....+
T Consensus 71 ----~~~----i~~~~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~R~R~~es~e 142 (188)
T PRK04040 71 ----AER----IAEMAGEGPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDETRRRDVETEE 142 (188)
T ss_pred ----HHH----HHHhhcCCCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhcccccCCCCCCHH
Confidence 000 0001223457788887654 21 0 1 1346789999999865555554323446666666
Q ss_pred HHHHHHHhhhhHHHHhhcCCCCceeEEEcC
Q 010501 210 IIHQISETVYPMYKAFIEPDLQTAHIKIIN 239 (509)
Q Consensus 210 Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n 239 (509)
.++.+.+..+- +..++.-.....+.+|.|
T Consensus 143 ~I~~~~~~a~~-~a~~~a~~~g~~~~iI~N 171 (188)
T PRK04040 143 DIEEHQEMNRA-AAMAYAVLTGATVKIVEN 171 (188)
T ss_pred HHHHHHHHHHH-HHHHHHHhcCCeEEEEEC
Confidence 67766655433 222232223335666644
No 457
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.08 E-value=1.2e-05 Score=76.27 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=22.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp 91 (509)
+++|+||||||||||++.|++.++
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCC
Confidence 899999999999999999998873
No 458
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.07 E-value=2.3e-06 Score=92.78 Aligned_cols=49 Identities=18% Similarity=0.106 Sum_probs=41.6
Q ss_pred EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCee-EEEECCccC
Q 010501 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-VITMDNYND 103 (509)
Q Consensus 50 ~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g-~I~~D~y~~ 103 (509)
..+|++|++.+++|+ +++|+||||||||||++ .+.. |..| .|.+|+...
T Consensus 19 ~~vL~~Vsl~i~~GE---iv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~ 69 (504)
T TIGR03238 19 ERILVKFNKELPSSS---LLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHS 69 (504)
T ss_pred HHHHhCCceeecCCC---EEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEEC
Confidence 457899999999999 99999999999999999 3444 6666 799999743
No 459
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.07 E-value=2.9e-06 Score=90.54 Aligned_cols=137 Identities=17% Similarity=0.237 Sum_probs=83.6
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC---C-CeeEE------EECCccC-------
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---P-SIAVI------TMDNYND------- 103 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll---p-~~g~I------~~D~y~~------- 103 (509)
++++++.....++-+.+|.+-.|. ..|++||||-|||||++.|+..- | ..-++ ..|+-..
T Consensus 268 EnF~ISA~Gk~LFvnA~L~Iv~GR---RYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~a 344 (807)
T KOG0066|consen 268 ENFDISAQGKLLFVNASLTIVYGR---RYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKA 344 (807)
T ss_pred eeeeeecccceeeeccceEEEecc---eecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHh
Confidence 445555566778889999999999 99999999999999999998753 3 33222 2222210
Q ss_pred -ccc--------cccccCCCCCCCchhhHHHHHHhhccCc---------------ceeccccccCCCCcCCCeeeeecCc
Q 010501 104 -SSR--------IIDGNFDDPRLTDYDTLLENIRGLKEGK---------------AVQVPIYDFKSSSRIGYRTLEVPSS 159 (509)
Q Consensus 104 -~~r--------~i~~~fq~p~~~d~~tl~e~L~~L~~g~---------------~i~~P~yD~~~~~rsgg~~~~v~~a 159 (509)
..+ .+..-+..-..-..+.+.+....|+.-. ......-++.+...|||-+.++..+
T Consensus 345 D~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~rPt~kFSGGWRMRvSLA 424 (807)
T KOG0066|consen 345 DKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQERPTTKFSGGWRMRVSLA 424 (807)
T ss_pred hHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcCCccccCCceeeehhHH
Confidence 000 0000111111111222333333333211 1111112333445678888999999
Q ss_pred cEEEEecceeeeccccCCCCe
Q 010501 160 RIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 160 ~VLIVEGi~aL~dElr~lLDl 180 (509)
++|.+|+.++.+|||++.||+
T Consensus 425 RALflEPTLLMLDEPTNHLDL 445 (807)
T KOG0066|consen 425 RALFLEPTLLMLDEPTNHLDL 445 (807)
T ss_pred HHHhcCceeeeecCCcccccc
Confidence 999999999999999999996
No 460
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=98.06 E-value=1e-05 Score=86.89 Aligned_cols=328 Identities=19% Similarity=0.253 Sum_probs=170.5
Q ss_pred eeeeceeeeeeeEE----EeC--cEEEeeeece-eeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEE----EC
Q 010501 32 DRYEIVPIEDTLSF----EKG--FFIVIRACQL-LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT----MD 99 (509)
Q Consensus 32 ~~~~~~~i~~~lsf----~~g--~~~iLk~IsL-~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~----~D 99 (509)
+.++++.+|+.+.- .|| .+.+ - .| ...+|. ++||+|+||-||||.++.|++.+ |+-|.-. .|
T Consensus 65 ~AI~IvnLP~eLe~e~vHRYg~NgFkL-~--~LP~pr~G~---V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wd 138 (591)
T COG1245 65 DAISIVNLPEELEEEVVHRYGVNGFKL-Y--RLPTPRPGK---VVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWD 138 (591)
T ss_pred ceEEEecCchhhcccceeeccCCceEE-e--cCCCCCCCc---EEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHH
Confidence 56777888777642 232 2221 1 22 224677 99999999999999999999998 6543221 00
Q ss_pred C----ccCc----------c------ccccccCCCCCCCchhhHHHHHHhhcc-Cc-------ceeccccccCCCCcCCC
Q 010501 100 N----YNDS----------S------RIIDGNFDDPRLTDYDTLLENIRGLKE-GK-------AVQVPIYDFKSSSRIGY 151 (509)
Q Consensus 100 ~----y~~~----------~------r~i~~~fq~p~~~d~~tl~e~L~~L~~-g~-------~i~~P~yD~~~~~rsgg 151 (509)
. |.-+ . ....|+---|..+. -++.+.|....+ |. .-.....|+..+.+|||
T Consensus 139 eVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~~K-G~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGG 217 (591)
T COG1245 139 EVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKVVK-GKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGG 217 (591)
T ss_pred HHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHHhc-chHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCch
Confidence 0 0000 0 00001100011111 123333333222 11 01124678888899999
Q ss_pred eeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHH------HHHHHHHHhhhhHHHHh
Q 010501 152 RTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE------EIIHQISETVYPMYKAF 225 (509)
Q Consensus 152 ~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e------~Vi~~y~~~V~P~~~~f 225 (509)
+-|+++.+.++.-|..+-+.|||.+.||++ ..--.-|++|++.+.+..+. .|++...+.
T Consensus 218 ELQr~aIaa~l~rdADvY~FDEpsSyLDi~-------qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~-------- 282 (591)
T COG1245 218 ELQRVAIAAALLRDADVYFFDEPSSYLDIR-------QRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDF-------- 282 (591)
T ss_pred HHHHHHHHHHHhccCCEEEEcCCcccccHH-------HHHHHHHHHHHHhccCCeEEEEechHHHHHHhhhe--------
Confidence 999999999999999999999999999984 22234567788877666642 233322211
Q ss_pred hcCCCCceeEEEcCCCCCCcCCCCcceeeccCCcccHHHHHHHhc----ccccccccceeeEEEeCCCCCcc--ccccce
Q 010501 226 IEPDLQTAHIKIINKFNPFTGFQNPTYILKSTRPVTVDEIKAVMS----KEHTETTEETYDIYLLPPGEDPD--ACQSYL 299 (509)
Q Consensus 226 IeP~k~~ADIII~n~~~p~~g~~~~~~i~ks~~~~~~~~i~~~l~----~~~~~~~~~~~diyl~pp~~~~~--~~~~~i 299 (509)
-+|+. ..---|+-.-.| ||. -..|-.+|+ ..++.--.+++..-..||..+.. ...+|=
T Consensus 283 -------vhI~Y-G~pg~YGvvs~p----~sv----r~gIN~yL~Gyl~~EN~R~R~~~I~F~~~~~~~~~~~~~lv~y~ 346 (591)
T COG1245 283 -------VHILY-GEPGVYGVVSKP----KSV----RVGINEYLKGYLPEENVRFRPEEIEFEEKPPRDDKARDTLVEYP 346 (591)
T ss_pred -------eEEEe-cCCccceEeccc----hHH----HHHHHHHHhccCchhcccccccceeeeccCcccccccceeeecc
Confidence 12221 111112211222 111 223444443 22222223344444555554433 567788
Q ss_pred eeeccCceEEEEee-ecccCCCeE--eccccceeeceeecccccccCceEEEEEEeccceeecCcEEEEehhhhhcCcce
Q 010501 300 RMRNRDGKYNLMFE-EWVTDSPFI--ISPRITFEVSVRLLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKY 376 (509)
Q Consensus 300 r~r~~~~~~~l~~~-~~i~~~~f~--~~P~~~f~v~~~~~~gl~~lgy~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 376 (509)
.+.-+=|-|.|-++ -.+.++-.+ .-|- -+|.+|.-.+||= .|+-......+=+|+.|..+|..-
T Consensus 347 ~~~k~~g~F~L~V~~G~i~~gEvigilGpN---giGKTTFvk~LAG------~ikPdeg~~~~~~vSyKPQyI~~~---- 413 (591)
T COG1245 347 DLKKTYGDFKLEVEEGEIYDGEVIGILGPN---GIGKTTFVKLLAG------VIKPDEGSEEDLKVSYKPQYISPD---- 413 (591)
T ss_pred hheeecCceEEEecCCeeecceEEEEECCC---CcchHHHHHHHhc------cccCCCCCCccceEeecceeecCC----
Confidence 88888788999884 556666554 4554 3456665555541 122221114445566665555432
Q ss_pred EEEeccChhHHHHHHhhhcCccCccchhHHHHHHHhh
Q 010501 377 VQVQGRDRLYVKYVGEQLGLDGSYVPRTYIEQIQLEK 413 (509)
Q Consensus 377 ~~~~g~~~~~v~~~~~~l~~~~~~~~~~y~~~~~~~~ 413 (509)
-+|+-+.....+. +-....+|.----+.-.+||.
T Consensus 414 --~~gtV~~~l~~~~-~~~~~~s~~~~ei~~pl~l~~ 447 (591)
T COG1245 414 --YDGTVEDLLRSAI-RSAFGSSYFKTEIVKPLNLED 447 (591)
T ss_pred --CCCcHHHHHHHhh-hhhcccchhHHhhcCccchHH
Confidence 2455444443333 223555655433333333433
No 461
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.05 E-value=1e-05 Score=75.69 Aligned_cols=23 Identities=26% Similarity=0.460 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
+|+|.|++||||||+++.|+..+
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999999766
No 462
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=98.02 E-value=3.9e-06 Score=89.53 Aligned_cols=128 Identities=12% Similarity=0.154 Sum_probs=82.5
Q ss_pred eeeEEEe-CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCC--
Q 010501 41 DTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR-- 116 (509)
Q Consensus 41 ~~lsf~~-g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~-- 116 (509)
.+++|.| |..++++.++|-+.-.. .|+|+||||.|||||++.|.+.+ |..|...-+.. -.+++.-|+.+
T Consensus 590 H~VtFgy~gqkpLFkkldFGiDmdS---RiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnhr----L~iG~FdQh~~E~ 662 (807)
T KOG0066|consen 590 HDVTFGYPGQKPLFKKLDFGIDMDS---RIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNHR----LRIGWFDQHANEA 662 (807)
T ss_pred ccccccCCCCCchhhcccccccccc---eeEEECCCCccHHHHHHHHhcCCCCCcchhhccce----eeeechhhhhHHh
Confidence 5578877 67789999999988888 89999999999999999999998 76554432211 01221111110
Q ss_pred ---------------CCchhhHHHHHHhhc-cCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 117 ---------------LTDYDTLLENIRGLK-EGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 117 ---------------~~d~~tl~e~L~~L~-~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
-+++...+..|-.+. .... -......+|||+.-++..+.+-+-++..+++|||++.||+
T Consensus 663 L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~sHA-----HTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDI 737 (807)
T KOG0066|consen 663 LNGEETPVEYLQRKFNLPYQEARKQLGTFGLASHA-----HTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDI 737 (807)
T ss_pred hccccCHHHHHHHhcCCChHHHHHHhhhhhhhhcc-----ceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcch
Confidence 012222222221110 0000 0111235678888888888888888888999999999998
No 463
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.02 E-value=4.7e-06 Score=78.04 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=28.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC--CCeeEEEECC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMDN 100 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll--p~~g~I~~D~ 100 (509)
+.+|.+.|++||||||+++.|.+.+ +..+.+.+|+
T Consensus 7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~ 43 (176)
T PRK05541 7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDG 43 (176)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEec
Confidence 3499999999999999999999888 3445555554
No 464
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.00 E-value=5.6e-05 Score=74.41 Aligned_cols=77 Identities=16% Similarity=0.103 Sum_probs=55.2
Q ss_pred cEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCC--HHHHHHHHHHhhhhHHHHhhcCCCCceeEEE
Q 010501 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE--PEEIIHQISETVYPMYKAFIEPDLQTAHIKI 237 (509)
Q Consensus 160 ~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t--~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII 237 (509)
+=+++||-=+.. -+.+--++|||++++..+|-.||.... ...|.+ .++++.....+......+-+.|-+...|.++
T Consensus 121 ~~~V~dGRDiGT-vV~PdA~lKiFLtAS~e~RA~RR~~q~-~~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~ 198 (222)
T COG0283 121 PGIVADGRDIGT-VVFPDAELKIFLTASPEERAERRYKQL-QAKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALL 198 (222)
T ss_pred CCEEEecCCCcc-eECCCCCeEEEEeCCHHHHHHHHHHHH-HhccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEE
Confidence 336777743321 234457899999999999887776644 445533 6889998888888888888889888888665
Q ss_pred c
Q 010501 238 I 238 (509)
Q Consensus 238 ~ 238 (509)
.
T Consensus 199 i 199 (222)
T COG0283 199 L 199 (222)
T ss_pred E
Confidence 4
No 465
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=98.00 E-value=2.2e-06 Score=82.97 Aligned_cols=34 Identities=15% Similarity=0.198 Sum_probs=27.5
Q ss_pred EeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 52 iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+++++++.. |+ +++|.||||||||||++.|++..
T Consensus 16 v~n~i~l~~--g~---~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 16 VANDIDMEK--KN---GILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred ecceEEEcC--Cc---EEEEECCCCCChHHHHHHHHHHH
Confidence 455555544 57 99999999999999999998754
No 466
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=97.97 E-value=1.3e-05 Score=93.88 Aligned_cols=65 Identities=9% Similarity=0.063 Sum_probs=52.0
Q ss_pred ccCCCCcCCCeeeeecCccEEEEec---ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHH
Q 010501 142 DFKSSSRIGYRTLEVPSSRIVIIEG---IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (509)
Q Consensus 142 D~~~~~rsgg~~~~v~~a~VLIVEG---i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~ 213 (509)
+......|+|+.+++..++.++.++ .+++.|||...||. .+.+.+..+.+.+.+.|.++.-+.|.
T Consensus 825 ~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~-------~~~~~L~~~L~~l~~~G~TVIiitH~ 892 (943)
T PRK00349 825 GQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHF-------EDIRKLLEVLHRLVDKGNTVVVIEHN 892 (943)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCH-------HHHHHHHHHHHHHHhCCCEEEEEecC
Confidence 4556678999999999999999987 88899999999998 46677777777777778775544443
No 467
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=97.96 E-value=8.3e-05 Score=80.55 Aligned_cols=176 Identities=18% Similarity=0.237 Sum_probs=123.4
Q ss_pred eeeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccC----cc-----ccc
Q 010501 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND----SS-----RII 108 (509)
Q Consensus 40 ~~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~----~~-----r~i 108 (509)
.++++.... ....+++|||.+..|+ |+||+|-.|-|-+.|+.+|+++. +..|.|.+++... .. ..+
T Consensus 260 V~~L~v~~~~~~~~v~~vs~~Vr~GE---IvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~ 336 (501)
T COG3845 260 VEDLSVKDRRGVTAVKDVSFEVRAGE---IVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGL 336 (501)
T ss_pred EeeeEeecCCCCceeeeeeeEEecCc---EEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCC
Confidence 355555432 3578999999999999 99999999999999999999998 6679999999763 11 234
Q ss_pred cccCCCC---CCCchhhHHHHHH-------------------------hhccCcceeccccccCCCCcCCCeeeeecCcc
Q 010501 109 DGNFDDP---RLTDYDTLLENIR-------------------------GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSR 160 (509)
Q Consensus 109 ~~~fq~p---~~~d~~tl~e~L~-------------------------~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~ 160 (509)
++++++. .+...+++.+|+. .+.+...+..|.-+-....+|||..|++-.++
T Consensus 337 ~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaR 416 (501)
T COG3845 337 AYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILAR 416 (501)
T ss_pred ccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhh
Confidence 5555543 2233334444432 22222233333333334567899999999999
Q ss_pred EEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCC-------HHHHHHHHHHhhhhHHHHhh
Q 010501 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE-------PEEIIHQISETVYPMYKAFI 226 (509)
Q Consensus 161 VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t-------~e~Vi~~y~~~V~P~~~~fI 226 (509)
=+.-++.+++...|+..+|+ -....+++..++.+.+|.. +++++. ..+++..||...+
T Consensus 417 El~~~p~lLI~~qPTrGLDv-------gA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~-lsDrIaVi~~Gri 481 (501)
T COG3845 417 ELARRPDLLIAAQPTRGLDV-------GAIEFIHERLLELRDAGKAVLLISEDLDEILE-LSDRIAVIYEGRI 481 (501)
T ss_pred hhccCCCEEEEcCCCccccH-------HHHHHHHHHHHHHHhcCCEEEEEehhHHHHHH-hhheeeeeeCCce
Confidence 99999999999999999998 5678899999999999964 444433 3344444444443
No 468
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=97.95 E-value=4.6e-06 Score=90.69 Aligned_cols=149 Identities=14% Similarity=0.217 Sum_probs=93.9
Q ss_pred eCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC-CeeEEEECCccCccccccccCCCC----------
Q 010501 47 KGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDNYNDSSRIIDGNFDDP---------- 115 (509)
Q Consensus 47 ~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp-~~g~I~~D~y~~~~r~i~~~fq~p---------- 115 (509)
+....++..++|.+++|. -+.|.||||||||+|.+.|.++.| ..|.+++=. +..+-|.+|.|
T Consensus 492 P~~~vvv~~Ltf~i~~G~---hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~----~~~mFYIPQRPYms~gtlRDQ 564 (728)
T KOG0064|consen 492 PAGDVLVPKLTFQIEPGM---HLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR----PNNIFYIPQRPYMSGGTLRDQ 564 (728)
T ss_pred cCcceeecceeEEecCCc---eEEEECCCCccHHHHHHHHhccCcccCCeeecCC----CcceEeccCCCccCcCcccce
Confidence 445668899999999999 999999999999999999999987 455554421 11122222222
Q ss_pred ----CC-----------CchhhHHHHH--HhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCC
Q 010501 116 ----RL-----------TDYDTLLENI--RGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (509)
Q Consensus 116 ----~~-----------~d~~tl~e~L--~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lL 178 (509)
+. -|...+.+.+ ..+.+.....--.-|| ....++|+.|+++.+++..--+.|+++||-++..
T Consensus 565 IIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~dW-kd~LsgGekQR~~mARm~yHrPkyalLDEcTsAv 643 (728)
T KOG0064|consen 565 IIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRDW-KDVLSGGEKQRMGMARMFYHRPKYALLDECTSAV 643 (728)
T ss_pred eecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhccH-HhhccchHHHHHHHHHHHhcCcchhhhhhhhccc
Confidence 11 1111111111 1111111111112233 2457899999999999999999999999877654
Q ss_pred CeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHH
Q 010501 179 DLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (509)
Q Consensus 179 DlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~ 213 (509)
.+ ....++-.-.+..|.++..+.|+
T Consensus 644 si----------dvE~~i~~~ak~~gi~llsithr 668 (728)
T KOG0064|consen 644 SI----------DVEGKIFQAAKDAGISLLSITHR 668 (728)
T ss_pred cc----------chHHHHHHHHHhcCceEEEeecC
Confidence 43 12456666667778876665553
No 469
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.95 E-value=1.6e-05 Score=93.94 Aligned_cols=148 Identities=15% Similarity=0.140 Sum_probs=110.7
Q ss_pred EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC----CeeEEEECCccCc----cccccccCCCCCCCchh
Q 010501 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS----SRIIDGNFDDPRLTDYD 121 (509)
Q Consensus 50 ~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp----~~g~I~~D~y~~~----~r~i~~~fq~p~~~d~~ 121 (509)
..++++++..+++|+ ++.+.||+|||||||+++|++.+. ..|.|+.||+... ++...|+.|+..-++.+
T Consensus 128 ~~il~~~sg~~~pg~---m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGE---MTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCc---eEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEecccccccccee
Confidence 468999999999999 999999999999999999999873 4668999998532 34567888887778888
Q ss_pred hHHHHHHhhccCcce-----ecc--c------------------cccCCC-----CcCCCeeeeecCccEEEEecceeee
Q 010501 122 TLLENIRGLKEGKAV-----QVP--I------------------YDFKSS-----SRIGYRTLEVPSSRIVIIEGIYALS 171 (509)
Q Consensus 122 tl~e~L~~L~~g~~i-----~~P--~------------------yD~~~~-----~rsgg~~~~v~~a~VLIVEGi~aL~ 171 (509)
+++|.|.+....+.. +.+ . .|...+ ..|||++.++..+..++--+...+.
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~ 284 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW 284 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence 999888875543321 111 1 111111 2368899999999999999999999
Q ss_pred ccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 172 dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
|++...||-. ...+.++.++.-...-+.+
T Consensus 285 De~t~GLDSs------Tal~iik~lr~~a~~~~~t 313 (1391)
T KOG0065|consen 285 DEITRGLDSS------TAFQIIKALRQLAHITGAT 313 (1391)
T ss_pred ecccccccHH------HHHHHHHHHHHHHhhhcce
Confidence 9999999952 3455566665555555554
No 470
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=97.87 E-value=2e-05 Score=89.18 Aligned_cols=76 Identities=11% Similarity=0.093 Sum_probs=57.6
Q ss_pred EEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCC--CHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEc
Q 010501 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ--EPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (509)
Q Consensus 161 VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~--t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~ 238 (509)
=+|+||--+-. .+.+.-|+|||++++.++|-.||... +.++|. +.+++.++..++.+-...+++.|-+...|-++.
T Consensus 558 ~~v~eGRdigt-vv~p~a~~kifl~a~~~~Ra~Rr~~~-~~~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~i 635 (661)
T PRK11860 558 GLVADGRDMGT-VIFPDAALKVFLTASAEARAERRYKQ-LISKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLL 635 (661)
T ss_pred CEEEECCCCcc-EECCCCCeEEEEECChhHHHHHHHHH-HHhCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEE
Confidence 47888865543 23344799999999999987777554 445564 789999999999988888999998887664443
No 471
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.87 E-value=2.1e-05 Score=74.95 Aligned_cols=44 Identities=25% Similarity=0.465 Sum_probs=37.2
Q ss_pred eeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCc
Q 010501 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (509)
Q Consensus 55 ~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y 101 (509)
-+.+.++.|+ .++|+||+|||||||+++|++.+ +..+.+.+++.
T Consensus 17 ~l~~~v~~g~---~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~ 61 (186)
T cd01130 17 YLWLAVEARK---NILISGGTGSGKTTLLNALLAFIPPDERIITIEDT 61 (186)
T ss_pred HHHHHHhCCC---EEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCc
Confidence 3455678888 99999999999999999999998 56788887764
No 472
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.85 E-value=8.2e-06 Score=81.06 Aligned_cols=35 Identities=9% Similarity=0.100 Sum_probs=29.7
Q ss_pred CCcCCCeeeeecCccEEEEe----cceeeeccccCCCCe
Q 010501 146 SSRIGYRTLEVPSSRIVIIE----GIYALSEKLRPLIDL 180 (509)
Q Consensus 146 ~~rsgg~~~~v~~a~VLIVE----Gi~aL~dElr~lLDl 180 (509)
...++|+.+++..+++++.+ +.+++.|||...+|.
T Consensus 154 ~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~ 192 (247)
T cd03275 154 DNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDN 192 (247)
T ss_pred HHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCH
Confidence 45678888889999988765 789999999999997
No 473
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.81 E-value=6.2e-06 Score=71.71 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=20.8
Q ss_pred EEEECCCCCcHHHHHHHHHhhC
Q 010501 69 VGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 69 IgI~GpSGSGKTTLar~L~~ll 90 (509)
|+|.|++||||||+++.|...+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999986
No 474
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.78 E-value=3.7e-05 Score=70.61 Aligned_cols=32 Identities=22% Similarity=0.288 Sum_probs=26.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~ 100 (509)
.|.|+|++||||||+++.|+..+ ....+..|.
T Consensus 6 ~i~l~G~~GsGKstla~~La~~l-~~~~~d~d~ 37 (175)
T PRK00131 6 NIVLIGFMGAGKSTIGRLLAKRL-GYDFIDTDH 37 (175)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh-CCCEEEChH
Confidence 89999999999999999999988 333445444
No 475
>PRK13949 shikimate kinase; Provisional
Probab=97.76 E-value=1.7e-05 Score=74.92 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=27.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
-|.|+|++||||||+++.|++.+ ....+..|.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l-~~~~id~D~~ 35 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALAREL-GLSFIDLDFF 35 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc-CCCeecccHH
Confidence 58899999999999999999998 3445666644
No 476
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=97.70 E-value=0.00026 Score=68.37 Aligned_cols=143 Identities=17% Similarity=0.154 Sum_probs=73.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCccc---cccccCCCCCCCchhhHHHHHHhhccCcceeccccccC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR---IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFK 144 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~r---~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~ 144 (509)
++.|.||||+||||++++|.....-.-.|+.--...... .+.|.| .+-.+-...+..+.-+++..|.-.
T Consensus 6 l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~F--------vs~~EF~~~i~~~~fLE~a~~~gn 77 (191)
T COG0194 6 LIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFF--------VTEEEFEELIERDEFLEWAEYHGN 77 (191)
T ss_pred EEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEe--------CCHHHHHHHHhcCCcEEEEEEcCC
Confidence 999999999999999999988762222233221111111 122222 222333333444555555433211
Q ss_pred -CCCcCCC--eeeeecCccEEEEecceeeeccccCCC-C-eEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 010501 145 -SSSRIGY--RTLEVPSSRIVIIEGIYALSEKLRPLI-D-LRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVY 219 (509)
Q Consensus 145 -~~~rsgg--~~~~v~~a~VLIVEGi~aL~dElr~lL-D-lkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~ 219 (509)
-+..... +....+..-+|-+|.-.++. ++..+ | ..||+.+|.-..|.+|+ ..||.+.+++++.-+...+
T Consensus 78 yYGT~~~~ve~~~~~G~~vildId~qGa~q--vk~~~p~~v~IFi~pPs~eeL~~RL----~~Rgtds~e~I~~Rl~~a~ 151 (191)
T COG0194 78 YYGTSREPVEQALAEGKDVILDIDVQGALQ--VKKKMPNAVSIFILPPSLEELERRL----KGRGTDSEEVIARRLENAK 151 (191)
T ss_pred cccCcHHHHHHHHhcCCeEEEEEehHHHHH--HHHhCCCeEEEEEcCCCHHHHHHHH----HccCCCCHHHHHHHHHHHH
Confidence 1111110 01111122234444443332 22222 3 67899998866665554 5679888888887766655
Q ss_pred hHHHH
Q 010501 220 PMYKA 224 (509)
Q Consensus 220 P~~~~ 224 (509)
-....
T Consensus 152 ~Ei~~ 156 (191)
T COG0194 152 KEISH 156 (191)
T ss_pred HHHHH
Confidence 44443
No 477
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=97.70 E-value=8e-05 Score=73.30 Aligned_cols=58 Identities=17% Similarity=0.086 Sum_probs=45.1
Q ss_pred eeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCc
Q 010501 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (509)
Q Consensus 41 ~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y 101 (509)
.++.|.|. ..+++-++|+.++.|. -..++|.||||||||++.|++.- -..|.|...+.
T Consensus 17 sgl~f~y~~~dP~~~Dfnldlp~gs---RcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~Vlgr 76 (291)
T KOG2355|consen 17 SGLQFKYKVSDPIFFDFNLDLPAGS---RCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGR 76 (291)
T ss_pred eccEEecccCCceEEEEeeccCCCc---eEEEEecCCCchhhhHHHhcCcccccCCeEEEcCc
Confidence 45566553 4588999999999999 78889999999999999999874 23366665554
No 478
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=97.70 E-value=5.3e-05 Score=93.11 Aligned_cols=65 Identities=11% Similarity=0.027 Sum_probs=52.6
Q ss_pred ccCCCCcCCCeeeeecCccEEE---EecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHH
Q 010501 142 DFKSSSRIGYRTLEVPSSRIVI---IEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (509)
Q Consensus 142 D~~~~~rsgg~~~~v~~a~VLI---VEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~ 213 (509)
+....+.|+|+.+++..+++++ .++.++++|||...+|. .+.+.+..+.+.+.+.|.++.-+.|+
T Consensus 804 ~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~-------~~~~~Ll~lL~~L~~~G~TVIiIsHd 871 (1809)
T PRK00635 804 GRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHT-------HDIKALIYVLQSLTHQGHTVVIIEHN 871 (1809)
T ss_pred cCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCH-------HHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4455678999999999999997 58999999999999998 56777788888888888875444443
No 479
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.64 E-value=0.00011 Score=86.08 Aligned_cols=64 Identities=8% Similarity=0.057 Sum_probs=49.5
Q ss_pred ccCCCCcCCCeeeeecCccEEEEe---cceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 142 DFKSSSRIGYRTLEVPSSRIVIIE---GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 142 D~~~~~rsgg~~~~v~~a~VLIVE---Gi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
+....+.|+|+.+++..++.++.+ ..++++|||...||. .+...+..+.+.+.+.|.++.-+.|
T Consensus 823 ~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~-------~~~~~L~~~L~~l~~~G~TVIvi~H 889 (924)
T TIGR00630 823 GQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHF-------DDIKKLLEVLQRLVDQGNTVVVIEH 889 (924)
T ss_pred cCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHHhCCCEEEEEeC
Confidence 444567889999999999999874 678889999999998 5677777777777777876544333
No 480
>PRK08356 hypothetical protein; Provisional
Probab=97.58 E-value=9.5e-05 Score=70.85 Aligned_cols=34 Identities=24% Similarity=0.342 Sum_probs=26.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
..+|+|+||+||||||+++.|.. . ....|++.+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~-g~~~is~~~~ 38 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-K-GFCRVSCSDP 38 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-C-CCcEEeCCCc
Confidence 45899999999999999999965 4 3346777654
No 481
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.55 E-value=0.00017 Score=68.10 Aligned_cols=32 Identities=22% Similarity=0.418 Sum_probs=26.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~ 100 (509)
.|.|+|++||||||+++.|++.+ ....+..|.
T Consensus 6 ~I~liG~~GaGKStl~~~La~~l-~~~~vd~D~ 37 (172)
T PRK05057 6 NIFLVGPMGAGKSTIGRQLAQQL-NMEFYDSDQ 37 (172)
T ss_pred EEEEECCCCcCHHHHHHHHHHHc-CCcEEECCc
Confidence 79999999999999999999987 334555554
No 482
>PRK03839 putative kinase; Provisional
Probab=97.55 E-value=0.00043 Score=65.02 Aligned_cols=34 Identities=15% Similarity=0.472 Sum_probs=27.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 102 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~ 102 (509)
.|.|+|++||||||+++.|+..+ ..-.+.+|++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~-~~~~id~d~~~ 35 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL-GYEYVDLTEFA 35 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEEehhhhh
Confidence 58899999999999999999988 33456666653
No 483
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=97.53 E-value=2.8e-05 Score=74.03 Aligned_cols=93 Identities=14% Similarity=0.163 Sum_probs=55.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCC-CeeEEEE-------CCccCc---cccccccCCCCCCCchhhHHHHHHhhccCcce
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMP-SIAVITM-------DNYNDS---SRIIDGNFDDPRLTDYDTLLENIRGLKEGKAV 136 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp-~~g~I~~-------D~y~~~---~r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i 136 (509)
+.+|+||||||||+++.+|.-.+. ....... .++... ...+...|+.. + -
T Consensus 24 ~~~i~G~NGsGKSnil~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~-----------~--------~ 84 (178)
T cd03239 24 FNAIVGPNGSGKSNIVDAICFVLGGKAAKLRRGSLLFLAGGGVKAGINSASVEITFDKS-----------Y--------F 84 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCcccccccCcchhhhcccccCCCCceEEEEEEEECc-----------e--------E
Confidence 889999999999999999977662 1111110 111000 01122233222 1 1
Q ss_pred eccccccCCCCcCCCeeeeecCccEEE----EecceeeeccccCCCCe
Q 010501 137 QVPIYDFKSSSRIGYRTLEVPSSRIVI----IEGIYALSEKLRPLIDL 180 (509)
Q Consensus 137 ~~P~yD~~~~~rsgg~~~~v~~a~VLI----VEGi~aL~dElr~lLDl 180 (509)
..|..+...- .++|+.+++..++++. -.+.+++.|||...+|.
T Consensus 85 ~~~~~~~~~~-LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~ 131 (178)
T cd03239 85 LVLQGKVEQI-LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDP 131 (178)
T ss_pred EecCCcCccc-CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCH
Confidence 1233333222 5677888888887764 47888889999999997
No 484
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=97.52 E-value=0.00024 Score=69.49 Aligned_cols=39 Identities=5% Similarity=0.036 Sum_probs=28.2
Q ss_pred ccCCCCcCCCeeeeecCc----cEEEEecceeeeccccCCCCe
Q 010501 142 DFKSSSRIGYRTLEVPSS----RIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 142 D~~~~~rsgg~~~~v~~a----~VLIVEGi~aL~dElr~lLDl 180 (509)
+...+..|+|+.+.+..+ ..++.++.+++.|||...+|.
T Consensus 121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~ 163 (213)
T cd03277 121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDP 163 (213)
T ss_pred ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCH
Confidence 444567788877754433 233578899999999999997
No 485
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=97.50 E-value=4.8e-05 Score=82.72 Aligned_cols=132 Identities=12% Similarity=0.020 Sum_probs=92.6
Q ss_pred eeeEEEeCcE--EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCC
Q 010501 41 DTLSFEKGFF--IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (509)
Q Consensus 41 ~~lsf~~g~~--~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~ 117 (509)
..++|++... ..+.++++.++... -++++|+||+||||+++.+.+.+ |..|.+.... +.++++.+|+--.
T Consensus 366 ~~V~f~y~p~~y~~~~~~~~d~e~~s---Ri~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~----r~ri~~f~Qhhvd 438 (582)
T KOG0062|consen 366 SYVAFEYTPSEYQWRKQLGLDRESDS---RISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP----RLRIKYFAQHHVD 438 (582)
T ss_pred EeeeccCCCcchhhhhccCCccchhh---hhheeccCchhHHHHHHHHhccCCcccceeeecc----cceecchhHhhhh
Confidence 4466766533 58999999999988 89999999999999999999987 6777776543 3345666665322
Q ss_pred CchhhHHHHHHh---hccCc------------ceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 118 TDYDTLLENIRG---LKEGK------------AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 118 ~d~~tl~e~L~~---L~~g~------------~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
+ +......+.. ...|. .+.-+.-.++...+|||+..++..|..-...+.++++|||++.||.
T Consensus 439 ~-l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~ 515 (582)
T KOG0062|consen 439 F-LDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDR 515 (582)
T ss_pred H-HHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccH
Confidence 2 1111111211 22221 1222333444456899999999999999999999999999999997
No 486
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.48 E-value=0.00011 Score=71.84 Aligned_cols=161 Identities=17% Similarity=0.209 Sum_probs=84.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccC-----cc-------ccccccC-CCCCCCchhhHHHHHH----
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYND-----SS-------RIIDGNF-DDPRLTDYDTLLENIR---- 128 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~-----~~-------r~i~~~f-q~p~~~d~~tl~e~L~---- 128 (509)
+.+|||+|..||||||+++.+.. + +.-+|.+|.... .. ...+..+ +....++-..+.+.+-
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~-G~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~~~ 79 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-L-GFPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFNDPE 79 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-c-CCeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCCHH
Confidence 46999999999999999999998 4 455777777621 00 0111111 0111222222222210
Q ss_pred hhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHH
Q 010501 129 GLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (509)
Q Consensus 129 ~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e 208 (509)
....-..+..|........ ........++++|=.+++--.....+|.-|.|++|..+++.|-+.|+ +.+.+
T Consensus 80 ~~~~Le~i~hPli~~~~~~-----~~~~~~~~~~~~eiplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~----~~~~e 150 (201)
T COG0237 80 ARLKLEKILHPLIRAEIKV-----VIDGARSPYVVLEIPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRD----GLDEE 150 (201)
T ss_pred HHHHHHHhhhHHHHHHHHH-----HHHHhhCCceEEEchHHHhccccccCCEEEEEECCHHHHHHHHHhcC----CCCHH
Confidence 0000112222311110000 00001111555555554433345558999999999998877666655 55655
Q ss_pred HHHHHHHHhhhhHHHHhhcCCCCceeEEEcCCCCC
Q 010501 209 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNP 243 (509)
Q Consensus 209 ~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~~~p 243 (509)
++..... .-+|..++ ...||+++.|+.++
T Consensus 151 ~~~~~~~-~Q~~~~ek-----~~~ad~vi~n~~~i 179 (201)
T COG0237 151 DAEARLA-SQRDLEEK-----LALADVVIDNDGSI 179 (201)
T ss_pred HHHHHHH-hcCCHHHH-----HhhcCChhhcCCCH
Confidence 5554443 33444443 57899999877754
No 487
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.47 E-value=0.00018 Score=68.39 Aligned_cols=60 Identities=15% Similarity=0.144 Sum_probs=38.4
Q ss_pred cCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCcc------ccccccCCCCCCCchhhHHHHH
Q 010501 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENI 127 (509)
Q Consensus 62 ~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~------r~i~~~fq~p~~~d~~tl~e~L 127 (509)
+|+ +++|.|+|||||||++++|++.+.. +.+++..... ...++.+++...+++.....++
T Consensus 2 ~ge---~i~l~G~sGsGKSTl~~~la~~l~~---~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~ 67 (176)
T PRK09825 2 AGE---SYILMGVSGSGKSLIGSKIAALFSA---KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDA 67 (176)
T ss_pred CCc---EEEEECCCCCCHHHHHHHHHHhcCC---EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHH
Confidence 467 9999999999999999999998832 3444432111 1234555554444555544444
No 488
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.45 E-value=0.00012 Score=70.32 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=27.0
Q ss_pred eeeceeeecCCccEEEEEECCCCCcHHHHHHHHH
Q 010501 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVL 87 (509)
Q Consensus 54 k~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~ 87 (509)
-++++.+..|+ .+++|.||||||||||++.|+
T Consensus 18 ~~~~~~i~~~~--~~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 18 VPLDIQLGENK--RVLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EcceEEECCCc--eEEEEECCCCCChHHHHHHHH
Confidence 35677778773 289999999999999999988
No 489
>PF01928 CYTH: CYTH domain; InterPro: IPR008172 The CYTH domain is an ancient enzymatic domain that was present in the Last Universal Common Ancestor and was involved in nucleotide or organic phosphate metabolism []. It is found in a variety of enzymes, including thiamine-triphosphatase and the CyaB-like adenlyl cyclases []. Structurally, this domain consists mainly of antiparallel beta sheets that form a wide barrel with a channel running through it.; GO: 0006796 phosphate-containing compound metabolic process; PDB: 2DC4_B 3SY3_A 3TJ7_D 3N10_A 3N0Z_A 3N0Y_A 2FJT_A 2GFG_A 2EEN_A 2ACA_B ....
Probab=97.45 E-value=0.00046 Score=64.96 Aligned_cols=132 Identities=25% Similarity=0.359 Sum_probs=101.2
Q ss_pred ccccceeeEEEeCCCCCccccccceeeecc-CceEEEEeeecccCCCeEeccccceeec-------ee----eccccccc
Q 010501 275 ETTEETYDIYLLPPGEDPDACQSYLRMRNR-DGKYNLMFEEWVTDSPFIISPRITFEVS-------VR----LLGGLMAL 342 (509)
Q Consensus 275 ~~~~~~~diyl~pp~~~~~~~~~~ir~r~~-~~~~~l~~~~~i~~~~f~~~P~~~f~v~-------~~----~~~gl~~l 342 (509)
.......|+|+.+|+........|+|.|.. ++.+.+.+..+-.+++ ++.++|+++ .. ...-|-++
T Consensus 30 ~~~~~~~d~Y~dt~~~~L~~~~~~lRiR~~~~~~~~lTlK~~~~~~~---~~e~~~~~~r~e~e~~i~~~~~~~~~l~~l 106 (185)
T PF01928_consen 30 PKEEHQTDTYFDTPDRDLRKAGIALRIRRENGDGWYLTLKGPGSDGP---REEIEFEVSREEYEAPISDAEEMREILEAL 106 (185)
T ss_dssp EEEEEEEEEEEEETTTHHHHTTSEEEEEEETTTEEEEEEEEESSSSS---EEEEEEEESHHCCEEEHSHHHHHHHHHHHT
T ss_pred CeEEEEEEEEEeCCChhHHhCCcEEEEEeecCCccEEEEEccCccCc---ccccceeecchhhhccccchHHHHHHHHHh
Confidence 333456799999999888888899999954 4444499988887776 555555554 11 12234567
Q ss_pred CceEEEEEEeccceeecCcEEEEehhhhhc--CcceEEEeccChhHHHHHHhh-------hcCcc-CccchhHHHHH
Q 010501 343 GYTIATILKRSSHIFYDDRVCVKTDWLEQL--NRKYVQVQGRDRLYVKYVGEQ-------LGLDG-SYVPRTYIEQI 409 (509)
Q Consensus 343 gy~~~~~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~~~v~~~~~~-------l~~~~-~~~~~~y~~~~ 409 (509)
|+...+.+.-.-++|.-+.+.|.+|+.+.+ ....|.+++.+...+.+++.+ ||+.. +-++++|++++
T Consensus 107 ~l~~~~~~~k~R~~~~~~~~~v~lD~~~~~~~~~~EiE~~~~~~~~~~~~~~~i~~~~~~l~~~~~s~~~r~y~~l~ 183 (185)
T PF01928_consen 107 GLRPVARIEKKRRSYRLEGVEVELDEVDGLPGTFLEIEIESEDEEDLKEAAEEILALLNELGISENSKIERSYLELL 183 (185)
T ss_dssp TCEEEEEEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHHHHHHHHTTEEGGGBHHSHHHHHC
T ss_pred cCceeEEEEEEEEEEEECCEEEEEEEEecceEEEEEEEEcCCCHhHHHHHHHHHHHHhhhcCCCccchHHHHHHHhh
Confidence 788888777777777778899999999999 567788899999998888888 78876 88999999875
No 490
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=97.43 E-value=0.00051 Score=79.92 Aligned_cols=76 Identities=9% Similarity=0.015 Sum_probs=54.9
Q ss_pred EEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEcC
Q 010501 161 IVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIIN 239 (509)
Q Consensus 161 VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n 239 (509)
=+|+||-=+-. -+.+-.|+|+|++++...|-.||...-. ...+.+++.++...+.+....+-+.|-+...|.++.+
T Consensus 191 ~~V~eGRDigT-vVfPdA~~KifL~As~e~RA~RR~~e~~--~~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iD 266 (863)
T PRK12269 191 RVVCEGRDLTT-VVFVDADLKCYLDASIEARVARRWAQGT--SRLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVD 266 (863)
T ss_pred CEEEECCCCcc-EECCCCCEEEEEECCHHHHHHHHHHhhh--ccCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEE
Confidence 36666633211 3445579999999999998888865433 2367899999998888877778888888887866543
No 491
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=97.41 E-value=0.0011 Score=62.88 Aligned_cols=159 Identities=14% Similarity=0.107 Sum_probs=73.4
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCCC-eeEEEECCccCccccccccCCCCCCCchhhHHHHHHhhccCcceeccccccCC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMPS-IAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKS 145 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp~-~g~I~~D~y~~~~r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~ 145 (509)
.+|.|+|||||||+|+++.|....|. -+.+...--... +.+-... .-+.+.+-.+.-.....|.-++...|.-..
T Consensus 3 r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~--r~~e~~g--~dy~fvs~~ef~~~i~~g~fve~~~~~g~~ 78 (184)
T smart00072 3 RPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPP--RPGEVNG--VDYHFVSREEFEDDIKSGLFLEWGEYSGNY 78 (184)
T ss_pred cEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCC--CCCCcCC--ceEEECCHHHHHHHHHcCCeEEEEEEcCcC
Confidence 38999999999999999999988753 111111000000 0110000 001112222222333445545444332211
Q ss_pred -CCcCCCeeeeecCccEEEEecceeeeccccC-CCC-eEEEeecCchHHHHHHHHHHHHHcCCC-HHHHHHHHHHhhhhH
Q 010501 146 -SSRIGYRTLEVPSSRIVIIEGIYALSEKLRP-LID-LRVSVTGGVHFDLVKRVFRDIQRVGQE-PEEIIHQISETVYPM 221 (509)
Q Consensus 146 -~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~-lLD-lkIfVd~d~dirLiRRI~RD~~erG~t-~e~Vi~~y~~~V~P~ 221 (509)
+.....-...+...+.+|+++..-....+.. ..+ +.||+..+....+.+|+. .||.. .+.+..+.. ...-.
T Consensus 79 YGt~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~----~R~~~~~~~i~~rl~-~a~~~ 153 (184)
T smart00072 79 YGTSKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLR----GRGTETAERIQKRLA-AAQKE 153 (184)
T ss_pred cccCHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHH----hcCCCCHHHHHHHHH-HHHHH
Confidence 1110000111234567777776444333332 233 788998776555666554 46654 444444333 32222
Q ss_pred HHHhhcCCCCceeEEEcC
Q 010501 222 YKAFIEPDLQTAHIKIIN 239 (509)
Q Consensus 222 ~~~fIeP~k~~ADIII~n 239 (509)
.. .+ ...|.+|.|
T Consensus 154 ~~---~~--~~fd~~I~n 166 (184)
T smart00072 154 AQ---EY--HLFDYVIVN 166 (184)
T ss_pred Hh---hh--ccCCEEEEC
Confidence 11 12 446777765
No 492
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.38 E-value=0.00025 Score=69.75 Aligned_cols=57 Identities=16% Similarity=0.186 Sum_probs=41.2
Q ss_pred CCCeEEEeecCchHHHHHHHHHHHHHcCCCHH-HHH---HHHHHhhhhHHHHhhcCCCCceeEEEc
Q 010501 177 LIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE-EII---HQISETVYPMYKAFIEPDLQTAHIKII 238 (509)
Q Consensus 177 lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e-~Vi---~~y~~~V~P~~~~fIeP~k~~ADIII~ 238 (509)
.=|+-|+++++.+. +.+++..||++.| ... ..|.+.....|..|++..-..-++.|.
T Consensus 126 ~PdllIyLd~~~e~-----~l~RI~~RgR~~E~~~~~~~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~ 186 (216)
T COG1428 126 RPDLLIYLDASLET-----LLRRIAKRGRPFEIDNFDENKDYLKDLHRRYDDWFENYDACPVLGID 186 (216)
T ss_pred CCCEEEEEeCCHHH-----HHHHHHHhCCCcccccccchHHHHHHHHHHHHHHHHhcccCCeeeec
Confidence 34889999998765 3445567899877 222 347788888899999877666677775
No 493
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=97.38 E-value=0.00033 Score=66.25 Aligned_cols=25 Identities=28% Similarity=0.699 Sum_probs=23.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPS 92 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~ 92 (509)
++.|+||||||||||++.|...+|.
T Consensus 4 ~ivl~Gpsg~GK~~l~~~L~~~~~~ 28 (183)
T PF00625_consen 4 PIVLVGPSGSGKSTLAKRLIQEFPD 28 (183)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHSTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhccc
Confidence 8889999999999999999998864
No 494
>PRK12338 hypothetical protein; Provisional
Probab=97.34 E-value=0.00028 Score=73.44 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=24.8
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhCC
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFMP 91 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~llp 91 (509)
+|.+|+|.|++||||||+++.|+..++
T Consensus 3 ~p~ii~i~G~sGsGKST~a~~la~~l~ 29 (319)
T PRK12338 3 KPYVILIGSASGIGKSTIASELARTLN 29 (319)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHCC
Confidence 467999999999999999999999984
No 495
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=97.33 E-value=0.00014 Score=67.71 Aligned_cols=87 Identities=13% Similarity=0.074 Sum_probs=51.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCCchhhHHHHHHhhccCcceeccccccCCC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 146 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~ 146 (509)
++.|+|||||||||+++.+.-.+ ...+.+...+.. ..+.. .|. .. ..+ -+...
T Consensus 23 ~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~----~~g~~--~~~-~~-~~~------------------i~~~~ 76 (162)
T cd03227 23 LTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGV----KAGCI--VAA-VS-AEL------------------IFTRL 76 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcc----cCCCc--cee-eE-EEE------------------ehhee
Confidence 99999999999999999987665 221111110000 00100 000 00 000 01112
Q ss_pred CcCCCeeeeecCccEEEE----ecceeeeccccCCCCe
Q 010501 147 SRIGYRTLEVPSSRIVII----EGIYALSEKLRPLIDL 180 (509)
Q Consensus 147 ~rsgg~~~~v~~a~VLIV----EGi~aL~dElr~lLDl 180 (509)
..++++.+++..++++.. ++.+++.|||...+|.
T Consensus 77 ~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~ 114 (162)
T cd03227 77 QLSGGEKELSALALILALASLKPRPLYILDEIDRGLDP 114 (162)
T ss_pred eccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCH
Confidence 356667777777777765 6688889999999997
No 496
>PRK14530 adenylate kinase; Provisional
Probab=97.29 E-value=0.00053 Score=66.60 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=27.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
.|.|+|++||||||+++.|+..+ +...|+.++.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~-~~~~i~~g~~ 37 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEF-GVEHVTTGDA 37 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeEEeccHH
Confidence 68999999999999999999988 3445665554
No 497
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.28 E-value=0.00033 Score=68.31 Aligned_cols=39 Identities=13% Similarity=0.215 Sum_probs=34.1
Q ss_pred cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 49 ~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
...+.+++++...+|+ +++|.|||||||||+++.+++..
T Consensus 15 ~~~v~~~~~~~~~~~~---~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 15 KNFIPNDIYLTRGSSR---FHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred CcEEEeeeEEeeCCCc---EEEEECCCCCCHHHHHHHHHHHH
Confidence 3457888888889899 99999999999999999998764
No 498
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.28 E-value=0.00095 Score=60.59 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=26.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 102 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~ 102 (509)
++.|.|++||||||+++.|...+ +.-.+..|.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~-~~~~i~~D~~~ 34 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERL-GAPFIDGDDLH 34 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhc-CCEEEeCcccc
Confidence 47899999999999999999886 34455656554
No 499
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=97.27 E-value=0.0002 Score=73.75 Aligned_cols=42 Identities=24% Similarity=0.495 Sum_probs=34.6
Q ss_pred eceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC-CeeEEEECC
Q 010501 56 CQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-SIAVITMDN 100 (509)
Q Consensus 56 IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp-~~g~I~~D~ 100 (509)
+++.+..+. .++|+|++|||||||+++|++.+| ..+.+.+++
T Consensus 137 l~~~v~~~~---~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied 179 (308)
T TIGR02788 137 LRLAIASRK---NIIISGGTGSGKTTFLKSLVDEIPKDERIITIED 179 (308)
T ss_pred HHHHhhCCC---EEEEECCCCCCHHHHHHHHHccCCccccEEEEcC
Confidence 345667788 999999999999999999999984 566677664
No 500
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=97.26 E-value=0.00045 Score=74.72 Aligned_cols=76 Identities=17% Similarity=0.177 Sum_probs=53.2
Q ss_pred EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccC----------------ccccccccC
Q 010501 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND----------------SSRIIDGNF 112 (509)
Q Consensus 50 ~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~----------------~~r~i~~~f 112 (509)
..+++++ +.+.+|+ +++|.|+||+|||||+++|++.. ++...+-..++.. .+..+.+++
T Consensus 143 i~aID~l-l~I~~GQ---~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~ 218 (434)
T PRK07196 143 VNAINGL-LTIGKGQ---RVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAP 218 (434)
T ss_pred eeeccce-EeEecce---EEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEec
Confidence 4689999 9999999 99999999999999999999987 4544333333210 011345667
Q ss_pred CCCCCCchhhHHHHHHh
Q 010501 113 DDPRLTDYDTLLENIRG 129 (509)
Q Consensus 113 q~p~~~d~~tl~e~L~~ 129 (509)
++...+...+..+++..
T Consensus 219 ~d~s~~~rl~a~e~a~~ 235 (434)
T PRK07196 219 ADESPLMRIKATELCHA 235 (434)
T ss_pred CCCChhhhHHHHHHHHH
Confidence 77666666555555543
Done!