Query 010501
Match_columns 509
No_of_seqs 358 out of 3093
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 08:09:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010501.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010501hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tqc_A Pantothenate kinase; bi 99.9 4.3E-25 1.5E-29 226.0 13.9 205 38-242 61-310 (321)
2 3c8u_A Fructokinase; YP_612366 99.9 8.4E-23 2.9E-27 193.7 13.1 173 61-239 20-207 (208)
3 1sq5_A Pantothenate kinase; P- 99.9 9.3E-23 3.2E-27 205.9 10.3 187 51-241 49-297 (308)
4 3asz_A Uridine kinase; cytidin 99.9 9.6E-22 3.3E-26 185.1 13.3 173 68-241 8-188 (211)
5 2jeo_A Uridine-cytidine kinase 99.8 4.6E-21 1.6E-25 186.3 13.3 190 46-240 8-215 (245)
6 3aez_A Pantothenate kinase; tr 99.8 8.4E-21 2.9E-25 193.0 13.8 179 60-241 87-300 (312)
7 1odf_A YGR205W, hypothetical 3 99.8 6.3E-20 2.1E-24 184.8 14.8 174 63-239 28-275 (290)
8 2ga8_A Hypothetical 39.9 kDa p 99.8 2.9E-21 9.9E-26 200.0 4.3 144 93-238 156-349 (359)
9 1a7j_A Phosphoribulokinase; tr 99.8 1.5E-20 5.2E-25 189.0 6.3 170 65-235 4-204 (290)
10 1uj2_A Uridine-cytidine kinase 99.8 3.6E-19 1.2E-23 173.6 13.2 174 64-238 20-211 (252)
11 3fvq_A Fe(3+) IONS import ATP- 99.8 3.2E-19 1.1E-23 185.1 8.0 138 40-180 7-171 (359)
12 1oxx_K GLCV, glucose, ABC tran 99.8 2.4E-20 8.1E-25 193.0 -1.3 158 40-207 6-194 (353)
13 3rlf_A Maltose/maltodextrin im 99.8 4.5E-19 1.5E-23 185.3 8.0 159 40-208 6-188 (381)
14 2pcj_A ABC transporter, lipopr 99.8 4.2E-19 1.4E-23 171.9 7.2 157 40-206 7-192 (224)
15 1z47_A CYSA, putative ABC-tran 99.8 2.9E-20 9.9E-25 192.6 -1.9 158 40-207 17-199 (355)
16 3tif_A Uncharacterized ABC tra 99.7 6.6E-19 2.3E-23 171.9 6.6 159 40-208 4-200 (235)
17 1b0u_A Histidine permease; ABC 99.7 9.4E-19 3.2E-23 173.5 7.2 159 40-208 9-207 (262)
18 1ji0_A ABC transporter; ATP bi 99.7 2E-18 6.7E-23 168.9 9.3 159 40-208 9-193 (240)
19 2olj_A Amino acid ABC transpor 99.7 1.1E-18 3.7E-23 173.6 7.6 158 40-207 27-212 (263)
20 3d31_A Sulfate/molybdate ABC t 99.7 3E-19 1E-23 184.5 3.7 157 40-207 4-181 (348)
21 3tui_C Methionine import ATP-b 99.7 1.5E-18 5E-23 180.5 8.1 159 40-208 27-218 (366)
22 2yyz_A Sugar ABC transporter, 99.7 2.1E-18 7.1E-23 178.9 8.9 158 40-207 6-187 (359)
23 1g6h_A High-affinity branched- 99.7 2.3E-18 8E-23 170.0 8.5 138 40-180 10-186 (257)
24 1v43_A Sugar-binding transport 99.7 2.8E-18 9.6E-23 178.7 9.5 158 40-207 14-195 (372)
25 1vpl_A ABC transporter, ATP-bi 99.7 1.7E-18 5.8E-23 171.5 7.2 158 40-207 18-199 (256)
26 1g29_1 MALK, maltose transport 99.7 2.3E-18 8E-23 179.3 8.3 158 40-207 6-193 (372)
27 3gfo_A Cobalt import ATP-bindi 99.7 1.2E-18 4E-23 174.5 5.7 152 40-201 10-190 (275)
28 4g1u_C Hemin import ATP-bindin 99.7 2.8E-18 9.7E-23 170.7 8.0 154 40-203 14-196 (266)
29 2it1_A 362AA long hypothetical 99.7 2.9E-18 9.9E-23 178.1 6.8 158 40-207 6-187 (362)
30 1sgw_A Putative ABC transporte 99.7 3E-18 1E-22 165.6 6.0 137 40-180 13-166 (214)
31 1rz3_A Hypothetical protein rb 99.7 3.5E-18 1.2E-22 161.3 5.2 166 66-240 22-200 (201)
32 2d2e_A SUFC protein; ABC-ATPas 99.7 1.1E-17 3.6E-22 164.6 7.1 138 40-180 6-176 (250)
33 2ihy_A ABC transporter, ATP-bi 99.7 5.6E-18 1.9E-22 169.7 5.2 157 40-206 24-213 (279)
34 2onk_A Molybdate/tungstate ABC 99.7 2E-17 6.9E-22 162.2 8.9 156 40-208 4-181 (240)
35 2yz2_A Putative ABC transporte 99.7 1.8E-17 6.2E-22 164.5 7.3 138 40-180 5-171 (266)
36 2ff7_A Alpha-hemolysin translo 99.7 2.7E-17 9.4E-22 161.7 8.3 139 38-180 8-178 (247)
37 2ixe_A Antigen peptide transpo 99.7 1.4E-17 4.7E-22 166.0 4.6 137 40-180 19-189 (271)
38 2nq2_C Hypothetical ABC transp 99.7 2.7E-17 9.2E-22 162.4 6.4 151 40-206 7-181 (253)
39 3gd7_A Fusion complex of cysti 99.7 7.1E-18 2.4E-22 176.7 -0.3 137 40-180 22-188 (390)
40 1mv5_A LMRA, multidrug resista 99.7 2.1E-17 7.3E-22 161.7 3.0 156 40-207 4-191 (243)
41 3nh6_A ATP-binding cassette SU 99.6 8.9E-17 3.1E-21 163.3 6.8 137 40-180 56-223 (306)
42 2zu0_C Probable ATP-dependent 99.6 5.1E-17 1.8E-21 161.4 4.8 138 40-180 23-197 (267)
43 2qi9_C Vitamin B12 import ATP- 99.6 7.9E-17 2.7E-21 158.9 4.8 152 41-207 8-186 (249)
44 2ghi_A Transport protein; mult 99.6 1.4E-16 4.7E-21 157.8 4.4 137 40-180 20-188 (260)
45 2pze_A Cystic fibrosis transme 99.6 1.9E-16 6.6E-21 153.7 4.2 131 40-180 9-163 (229)
46 2cbz_A Multidrug resistance-as 99.6 1.3E-16 4.4E-21 155.8 2.5 131 40-180 6-160 (237)
47 2pjz_A Hypothetical protein ST 99.6 4.8E-16 1.6E-20 154.5 5.8 135 40-180 4-161 (263)
48 3b5x_A Lipid A export ATP-bind 99.6 8.7E-16 3E-20 167.6 4.8 162 40-213 344-538 (582)
49 3b60_A Lipid A export ATP-bind 99.5 2.3E-15 8E-20 164.2 6.2 137 40-180 344-513 (582)
50 2yl4_A ATP-binding cassette SU 99.5 3.5E-15 1.2E-19 163.2 6.0 137 40-180 344-516 (595)
51 3qf4_A ABC transporter, ATP-bi 99.5 2.9E-15 9.9E-20 163.9 4.3 137 40-180 344-512 (587)
52 4a82_A Cystic fibrosis transme 99.5 5.1E-15 1.7E-19 161.5 4.7 137 40-180 342-510 (578)
53 3qf4_B Uncharacterized ABC tra 99.5 4.2E-15 1.4E-19 162.9 2.2 137 40-180 357-524 (598)
54 2bbs_A Cystic fibrosis transme 99.5 8.5E-15 2.9E-19 147.5 2.1 127 41-180 44-192 (290)
55 3g5u_A MCG1178, multidrug resi 99.4 3.7E-14 1.3E-18 167.7 2.2 162 40-213 390-584 (1284)
56 1yqt_A RNAse L inhibitor; ATP- 99.4 2.8E-13 9.6E-18 147.1 5.6 150 41-207 291-455 (538)
57 3bk7_A ABC transporter ATP-bin 99.3 2.4E-13 8.2E-18 149.7 3.8 151 41-208 361-526 (607)
58 2qt1_A Nicotinamide riboside k 99.3 1.5E-12 5.2E-17 122.2 8.6 160 66-240 21-189 (207)
59 4f4c_A Multidrug resistance pr 99.3 1.2E-13 4.2E-18 163.7 1.3 137 40-180 418-587 (1321)
60 3ozx_A RNAse L inhibitor; ATP 99.3 6.2E-13 2.1E-17 144.5 6.7 151 41-207 273-439 (538)
61 3g5u_A MCG1178, multidrug resi 99.3 4.1E-13 1.4E-17 158.8 3.9 137 40-180 1033-1204(1284)
62 4f4c_A Multidrug resistance pr 99.3 3.3E-13 1.1E-17 160.0 2.6 137 40-180 1079-1250(1321)
63 1yqt_A RNAse L inhibitor; ATP- 99.3 1.8E-13 6E-18 148.6 0.3 159 41-210 25-214 (538)
64 3bk7_A ABC transporter ATP-bin 99.3 4.3E-13 1.5E-17 147.7 -0.1 161 41-212 95-286 (607)
65 3ux8_A Excinuclease ABC, A sub 99.2 2.1E-12 7E-17 143.1 2.4 154 50-213 31-263 (670)
66 3j16_B RLI1P; ribosome recycli 99.2 5.4E-12 1.9E-16 139.0 4.9 152 42-209 351-523 (608)
67 3d3q_A TRNA delta(2)-isopenten 99.2 1.2E-12 4E-17 135.0 -0.7 155 67-230 8-165 (340)
68 2iw3_A Elongation factor 3A; a 99.2 1.1E-11 3.8E-16 142.6 4.4 130 41-180 439-581 (986)
69 2iw3_A Elongation factor 3A; a 99.1 8.3E-12 2.8E-16 143.6 -2.1 58 40-100 674-734 (986)
70 1z6g_A Guanylate kinase; struc 99.0 5.1E-11 1.8E-15 114.0 1.9 169 50-239 10-191 (218)
71 2f6r_A COA synthase, bifunctio 99.0 4.8E-11 1.7E-15 118.8 1.7 164 64-241 73-253 (281)
72 3j16_B RLI1P; ribosome recycli 99.0 3.7E-11 1.3E-15 132.3 0.3 164 33-208 69-275 (608)
73 3tr0_A Guanylate kinase, GMP k 99.0 3.1E-11 1.1E-15 112.0 -0.4 162 57-240 1-171 (205)
74 4e22_A Cytidylate kinase; P-lo 99.0 2.9E-10 1E-14 111.1 6.1 80 159-240 145-227 (252)
75 3ux8_A Excinuclease ABC, A sub 99.0 7.4E-11 2.5E-15 130.7 0.5 65 142-213 538-605 (670)
76 1cke_A CK, MSSA, protein (cyti 99.0 2.6E-10 8.9E-15 107.6 4.1 80 159-240 123-205 (227)
77 2grj_A Dephospho-COA kinase; T 99.0 1.3E-10 4.5E-15 110.1 2.0 147 65-241 11-171 (192)
78 1htw_A HI0065; nucleotide-bind 98.9 3E-11 1E-15 111.2 -5.5 83 43-129 13-97 (158)
79 3ozx_A RNAse L inhibitor; ATP 98.9 1.2E-10 4E-15 126.6 -1.9 136 61-208 23-191 (538)
80 4gp7_A Metallophosphoesterase; 98.9 6.9E-11 2.4E-15 108.7 -3.3 110 55-180 1-116 (171)
81 3sop_A Neuronal-specific septi 98.8 3.9E-10 1.3E-14 112.1 -0.8 111 67-180 3-128 (270)
82 3b85_A Phosphate starvation-in 98.8 2.4E-10 8.1E-15 109.6 -3.1 116 49-177 12-134 (208)
83 2npi_A Protein CLP1; CLP1-PCF1 98.8 9.6E-11 3.3E-15 125.1 -6.7 121 55-181 130-276 (460)
84 2vp4_A Deoxynucleoside kinase; 98.8 4.9E-11 1.7E-15 114.6 -8.3 165 60-240 17-208 (230)
85 1jjv_A Dephospho-COA kinase; P 98.8 2.9E-09 9.8E-14 99.5 3.8 72 160-241 106-177 (206)
86 2v9p_A Replication protein E1; 98.7 8.2E-10 2.8E-14 112.2 -0.9 113 41-180 105-226 (305)
87 2j41_A Guanylate kinase; GMP, 98.7 1.6E-09 5.5E-14 100.4 -0.2 33 59-94 2-35 (207)
88 1q3t_A Cytidylate kinase; nucl 98.7 8.2E-09 2.8E-13 99.1 4.4 81 158-240 134-217 (236)
89 3a00_A Guanylate kinase, GMP k 98.7 4.6E-09 1.6E-13 97.3 2.5 157 68-240 3-169 (186)
90 3lnc_A Guanylate kinase, GMP k 98.7 6.7E-10 2.3E-14 106.1 -3.3 39 51-92 15-54 (231)
91 2if2_A Dephospho-COA kinase; a 98.7 3.2E-09 1.1E-13 98.9 0.6 70 160-240 106-175 (204)
92 1yem_A Hypothetical protein; s 98.7 5.8E-08 2E-12 91.3 9.1 141 261-409 18-171 (179)
93 3r20_A Cytidylate kinase; stru 98.6 1.3E-07 4.4E-12 92.6 11.5 78 160-239 129-209 (233)
94 1s96_A Guanylate kinase, GMP k 98.6 6.4E-09 2.2E-13 100.3 0.6 58 59-119 12-75 (219)
95 3ake_A Cytidylate kinase; CMP 98.6 1.8E-08 6.3E-13 93.2 3.6 72 160-240 119-191 (208)
96 2h92_A Cytidylate kinase; ross 98.5 1.2E-07 4.2E-12 89.1 8.0 79 160-240 119-200 (219)
97 3vaa_A Shikimate kinase, SK; s 98.5 9.2E-09 3.2E-13 96.1 -0.3 49 49-101 11-59 (199)
98 1vht_A Dephospho-COA kinase; s 98.5 7.4E-08 2.5E-12 90.8 5.8 159 66-241 4-179 (218)
99 1uf9_A TT1252 protein; P-loop, 98.5 1.5E-08 5.1E-13 93.5 0.9 159 65-240 7-177 (203)
100 1tq4_A IIGP1, interferon-induc 98.5 5.4E-10 1.8E-14 117.9 -10.2 51 51-101 37-105 (413)
101 2vf7_A UVRA2, excinuclease ABC 98.5 1.4E-08 4.7E-13 115.6 0.4 64 142-212 725-791 (842)
102 2pt7_A CAG-ALFA; ATPase, prote 98.5 5.7E-09 2E-13 106.5 -2.9 91 52-176 160-251 (330)
103 4eun_A Thermoresistant glucoki 98.5 3E-08 1E-12 92.7 2.2 63 58-126 24-92 (200)
104 4aby_A DNA repair protein RECN 98.5 2.3E-08 7.9E-13 103.2 1.2 38 49-90 47-84 (415)
105 3pih_A Uvrabc system protein A 98.5 2.2E-08 7.5E-13 114.9 1.0 65 142-213 800-867 (916)
106 3lw7_A Adenylate kinase relate 98.5 6.6E-08 2.2E-12 85.9 3.5 155 67-241 2-161 (179)
107 2r6f_A Excinuclease ABC subuni 98.5 4.2E-08 1.5E-12 112.6 2.6 64 142-212 840-906 (972)
108 3t61_A Gluconokinase; PSI-biol 98.4 1.6E-07 5.6E-12 87.4 5.7 35 67-102 19-53 (202)
109 3nwj_A ATSK2; P loop, shikimat 98.4 1.2E-08 4.2E-13 100.5 -2.3 47 41-90 21-72 (250)
110 3b9q_A Chloroplast SRP recepto 98.4 9.4E-08 3.2E-12 96.5 4.0 74 54-130 91-179 (302)
111 2ygr_A Uvrabc system protein A 98.4 7.1E-08 2.4E-12 111.1 3.3 64 142-212 858-924 (993)
112 1znw_A Guanylate kinase, GMP k 98.4 4.7E-08 1.6E-12 92.0 0.9 69 49-122 8-80 (207)
113 3ghx_A Adenylate cyclase CYAB; 98.4 9.8E-07 3.4E-11 82.8 9.7 143 262-410 20-178 (179)
114 4i1u_A Dephospho-COA kinase; s 98.4 2.3E-07 7.9E-12 89.5 5.1 158 66-240 9-184 (210)
115 2gza_A Type IV secretion syste 98.4 8.5E-08 2.9E-12 98.9 2.1 75 53-130 165-248 (361)
116 2dpy_A FLII, flagellum-specifi 98.4 6.6E-08 2.3E-12 102.6 0.9 86 41-130 135-238 (438)
117 1kgd_A CASK, peripheral plasma 98.3 1.1E-07 3.9E-12 87.6 2.1 27 62-91 4-30 (180)
118 3szr_A Interferon-induced GTP- 98.3 2.2E-07 7.5E-12 102.2 4.5 63 68-130 47-121 (608)
119 2qor_A Guanylate kinase; phosp 98.3 3.4E-07 1.2E-11 85.7 4.8 29 61-92 10-38 (204)
120 2og2_A Putative signal recogni 98.3 2.7E-07 9.3E-12 95.6 4.3 74 54-130 148-236 (359)
121 2een_A Hypothetical protein PH 98.3 1.7E-06 5.7E-11 80.9 9.1 132 279-413 29-177 (183)
122 2yhs_A FTSY, cell division pro 98.3 3E-07 1E-11 99.1 4.2 76 53-131 283-372 (503)
123 1ye8_A Protein THEP1, hypothet 98.3 3.6E-08 1.2E-12 91.9 -3.4 101 68-180 2-116 (178)
124 3euj_A Chromosome partition pr 98.2 4.1E-07 1.4E-11 97.7 3.0 50 50-103 17-67 (483)
125 1rj9_A FTSY, signal recognitio 98.2 1.2E-06 4E-11 88.6 5.8 65 62-129 101-179 (304)
126 1knq_A Gluconate kinase; ALFA/ 98.2 1.5E-06 5.1E-11 78.7 5.9 23 68-90 10-32 (175)
127 2dc4_A PH1012 protein, 165AA l 98.2 7.2E-06 2.5E-10 75.2 10.2 140 262-409 11-163 (165)
128 1tev_A UMP-CMP kinase; ploop, 98.2 5.2E-07 1.8E-11 82.1 2.2 35 66-101 3-37 (196)
129 2obl_A ESCN; ATPase, hydrolase 98.2 6.2E-07 2.1E-11 92.3 2.8 57 41-101 49-107 (347)
130 2jaq_A Deoxyguanosine kinase; 98.1 4.3E-07 1.5E-11 83.4 1.1 60 176-240 123-184 (205)
131 2qm8_A GTPase/ATPase; G protei 98.1 1E-07 3.5E-12 97.4 -3.6 75 42-119 34-120 (337)
132 2qnr_A Septin-2, protein NEDD5 98.1 1.8E-07 6.3E-12 94.0 -2.1 50 41-100 2-53 (301)
133 2eyu_A Twitching motility prot 98.1 4E-07 1.4E-11 90.0 0.2 46 51-101 15-62 (261)
134 1zp6_A Hypothetical protein AT 98.1 1.9E-06 6.6E-11 78.8 4.2 38 60-101 6-43 (191)
135 3uie_A Adenylyl-sulfate kinase 98.0 3E-07 1E-11 85.8 -2.4 58 41-101 3-62 (200)
136 3n10_A Adenylate cyclase 2; CY 98.0 2.8E-05 9.6E-10 72.2 10.9 125 280-409 41-177 (179)
137 3kb2_A SPBC2 prophage-derived 98.0 3.5E-06 1.2E-10 75.2 4.3 33 68-101 3-35 (173)
138 2qag_B Septin-6, protein NEDD5 98.0 7E-07 2.4E-11 94.6 -0.6 43 44-90 22-66 (427)
139 1y63_A LMAJ004144AAA protein; 98.0 3.9E-05 1.3E-09 70.6 11.0 44 55-101 2-45 (184)
140 3e70_C DPA, signal recognition 98.0 3.8E-06 1.3E-10 85.9 4.0 65 66-130 129-207 (328)
141 1ukz_A Uridylate kinase; trans 97.9 4.7E-05 1.6E-09 70.4 10.9 36 65-101 14-49 (203)
142 1p9r_A General secretion pathw 97.9 1.1E-06 3.7E-11 92.8 -0.7 46 51-101 157-203 (418)
143 1qf9_A UMP/CMP kinase, protein 97.9 9.1E-06 3.1E-10 73.7 4.8 35 66-101 6-40 (194)
144 1tf7_A KAIC; homohexamer, hexa 97.9 2.7E-06 9.4E-11 91.5 1.5 65 48-115 23-97 (525)
145 1ex7_A Guanylate kinase; subst 97.9 1.9E-05 6.7E-10 74.4 7.0 143 68-217 3-149 (186)
146 4a74_A DNA repair and recombin 97.9 1E-05 3.5E-10 75.6 5.0 41 59-102 21-69 (231)
147 2oap_1 GSPE-2, type II secreti 97.9 2.5E-06 8.5E-11 92.2 0.7 47 52-101 249-296 (511)
148 2bwj_A Adenylate kinase 5; pho 97.8 6.4E-06 2.2E-10 75.5 3.1 34 67-101 13-46 (199)
149 2ehv_A Hypothetical protein PH 97.8 1.1E-05 3.6E-10 76.4 4.2 39 59-100 26-67 (251)
150 2cdn_A Adenylate kinase; phosp 97.8 4.4E-05 1.5E-09 70.7 8.3 37 64-101 18-54 (201)
151 1u0l_A Probable GTPase ENGC; p 97.8 7.6E-06 2.6E-10 82.0 3.2 56 60-118 166-232 (301)
152 1ewq_A DNA mismatch repair pro 97.8 1.1E-06 3.9E-11 99.1 -3.2 36 49-90 565-600 (765)
153 2yv5_A YJEQ protein; hydrolase 97.7 1.1E-05 3.8E-10 81.0 3.2 54 61-118 163-227 (302)
154 2bdt_A BH3686; alpha-beta prot 97.7 1.3E-05 4.5E-10 73.5 3.5 60 68-129 4-64 (189)
155 1tf7_A KAIC; homohexamer, hexa 97.7 3.3E-06 1.1E-10 90.8 -1.1 109 57-180 275-385 (525)
156 3jvv_A Twitching mobility prot 97.7 6.4E-06 2.2E-10 85.1 0.7 29 59-90 119-147 (356)
157 2c95_A Adenylate kinase 1; tra 97.7 2.2E-05 7.7E-10 71.6 4.0 34 67-101 10-43 (196)
158 3thx_A DNA mismatch repair pro 97.7 8.9E-06 3.1E-10 93.7 1.4 36 49-87 648-683 (934)
159 2i3b_A HCR-ntpase, human cance 97.7 6.1E-06 2.1E-10 77.7 0.0 46 68-114 3-53 (189)
160 1e69_A Chromosome segregation 97.7 2.7E-05 9.2E-10 78.4 4.6 36 145-180 217-256 (322)
161 1cr0_A DNA primase/helicase; R 97.6 1.1E-05 3.7E-10 79.7 1.3 41 51-94 23-64 (296)
162 1t9h_A YLOQ, probable GTPase E 97.6 8.9E-06 3.1E-10 82.5 0.5 59 58-119 168-236 (307)
163 1lvg_A Guanylate kinase, GMP k 97.6 2E-05 6.9E-10 73.8 2.7 28 61-91 2-29 (198)
164 2bbw_A Adenylate kinase 4, AK4 97.6 4.7E-06 1.6E-10 80.2 -1.7 63 67-129 28-97 (246)
165 1ltq_A Polynucleotide kinase; 97.5 0.0001 3.4E-09 72.5 6.6 36 66-101 2-37 (301)
166 2f1r_A Molybdopterin-guanine d 97.5 2E-05 6.9E-10 73.1 1.5 35 68-102 4-42 (171)
167 3tau_A Guanylate kinase, GMP k 97.5 6.4E-05 2.2E-09 70.7 4.2 28 61-91 6-33 (208)
168 1lw7_A Transcriptional regulat 97.5 3.5E-05 1.2E-09 78.8 2.2 38 53-93 158-198 (365)
169 2rcn_A Probable GTPase ENGC; Y 97.4 6E-05 2E-09 78.1 3.7 69 53-125 206-280 (358)
170 2ewv_A Twitching motility prot 97.4 2.2E-05 7.4E-10 81.3 0.4 37 60-99 133-171 (372)
171 1kag_A SKI, shikimate kinase I 97.4 6.5E-05 2.2E-09 67.4 3.4 24 68-91 6-29 (173)
172 2x8a_A Nuclear valosin-contain 97.4 5.1E-05 1.7E-09 75.0 2.8 46 50-101 33-78 (274)
173 1pui_A ENGB, probable GTP-bind 97.4 1.6E-05 5.4E-10 73.3 -1.0 44 41-90 7-50 (210)
174 3ec2_A DNA replication protein 97.4 5.8E-05 2E-09 68.7 2.5 30 58-90 33-62 (180)
175 1qhl_A Protein (cell division 97.4 5.3E-06 1.8E-10 80.7 -4.9 35 68-102 29-64 (227)
176 3kta_A Chromosome segregation 97.4 8.9E-05 3.1E-09 67.3 3.4 33 54-90 18-50 (182)
177 2w0m_A SSO2452; RECA, SSPF, un 97.3 9E-05 3.1E-09 68.8 3.2 36 52-90 11-47 (235)
178 1n0w_A DNA repair protein RAD5 97.3 0.00019 6.7E-09 67.4 5.4 40 60-102 21-68 (243)
179 1wb9_A DNA mismatch repair pro 97.3 0.00012 4.1E-09 83.1 4.1 39 48-90 593-631 (800)
180 3thx_B DNA mismatch repair pro 97.3 8.2E-05 2.8E-09 85.6 2.5 38 49-89 659-696 (918)
181 1zu4_A FTSY; GTPase, signal re 97.3 0.0002 7E-09 72.7 5.2 34 54-90 96-129 (320)
182 1ixz_A ATP-dependent metallopr 97.2 9.3E-05 3.2E-09 71.1 2.1 45 51-101 39-83 (254)
183 1svm_A Large T antigen; AAA+ f 97.2 8.5E-05 2.9E-09 77.3 1.4 38 50-90 156-193 (377)
184 2o8b_B DNA mismatch repair pro 97.2 0.00018 6.1E-09 83.7 4.2 39 48-90 767-812 (1022)
185 1in4_A RUVB, holliday junction 97.2 1.8E-05 6E-10 80.1 -3.8 49 42-90 23-75 (334)
186 2pez_A Bifunctional 3'-phospho 97.2 0.00011 3.9E-09 66.7 1.8 34 68-101 7-42 (179)
187 1iy2_A ATP-dependent metallopr 97.1 0.00012 4.2E-09 71.5 2.1 46 50-101 62-107 (278)
188 1pzn_A RAD51, DNA repair and r 97.1 8.8E-05 3E-09 76.0 0.9 57 57-116 125-190 (349)
189 1qhx_A CPT, protein (chloramph 97.1 0.00023 7.8E-09 64.1 3.5 35 67-101 4-39 (178)
190 2kjq_A DNAA-related protein; s 97.1 0.00015 5.3E-09 65.2 2.3 26 62-90 35-60 (149)
191 3ney_A 55 kDa erythrocyte memb 97.1 0.00028 9.6E-09 67.2 4.2 28 61-91 17-44 (197)
192 1oix_A RAS-related protein RAB 97.1 0.0004 1.4E-08 63.7 4.9 27 64-90 27-53 (191)
193 2qag_C Septin-7; cell cycle, c 97.1 0.00012 4.2E-09 77.1 1.2 41 41-90 15-55 (418)
194 2ze6_A Isopentenyl transferase 97.1 0.00035 1.2E-08 68.0 4.4 33 68-101 3-35 (253)
195 1nij_A Hypothetical protein YJ 97.1 0.00015 5.2E-09 73.0 1.8 35 67-101 5-48 (318)
196 1ly1_A Polynucleotide kinase; 97.0 0.00035 1.2E-08 62.5 3.9 35 66-101 2-37 (181)
197 3fdi_A Uncharacterized protein 97.0 0.0016 5.6E-08 61.3 8.4 24 67-90 7-30 (201)
198 1udx_A The GTP-binding protein 97.0 0.00032 1.1E-08 73.9 3.3 35 53-90 147-181 (416)
199 2cvh_A DNA repair and recombin 97.0 0.00045 1.6E-08 63.9 3.9 37 59-99 16-52 (220)
200 3hdt_A Putative kinase; struct 96.9 0.0012 4E-08 63.8 6.5 25 66-90 14-38 (223)
201 4eaq_A DTMP kinase, thymidylat 96.9 0.00047 1.6E-08 66.3 3.7 39 53-91 13-51 (229)
202 3cm0_A Adenylate kinase; ATP-b 96.8 0.00055 1.9E-08 62.0 3.4 24 67-90 5-28 (186)
203 1vma_A Cell division protein F 96.8 0.00035 1.2E-08 70.6 2.2 39 57-98 98-137 (306)
204 2p5t_B PEZT; postsegregational 96.8 0.00061 2.1E-08 66.0 3.7 29 63-91 29-57 (253)
205 3cr8_A Sulfate adenylyltranfer 96.8 0.0004 1.4E-08 75.7 2.5 40 59-101 365-407 (552)
206 1kht_A Adenylate kinase; phosp 96.8 0.00052 1.8E-08 62.0 2.9 25 67-91 4-28 (192)
207 3trf_A Shikimate kinase, SK; a 96.8 0.00046 1.6E-08 62.6 2.4 33 68-101 7-39 (185)
208 3qf7_A RAD50; ABC-ATPase, ATPa 96.8 0.00077 2.6E-08 69.3 4.3 35 52-90 13-47 (365)
209 2f9l_A RAB11B, member RAS onco 96.8 0.001 3.5E-08 61.0 4.7 25 66-90 5-29 (199)
210 1gvn_B Zeta; postsegregational 96.8 0.00062 2.1E-08 67.7 3.5 29 63-91 30-58 (287)
211 2aca_A Putative adenylate cycl 96.8 0.0026 8.8E-08 59.7 7.4 142 262-409 22-179 (189)
212 1m7g_A Adenylylsulfate kinase; 96.8 0.00046 1.6E-08 64.6 2.3 38 60-100 22-62 (211)
213 1nlf_A Regulatory protein REPA 96.8 0.00077 2.6E-08 65.9 3.9 28 60-90 27-54 (279)
214 2rhm_A Putative kinase; P-loop 96.8 0.00062 2.1E-08 61.8 3.0 35 66-101 5-39 (193)
215 2plr_A DTMP kinase, probable t 96.7 0.00078 2.7E-08 61.8 3.4 26 67-92 5-30 (213)
216 1via_A Shikimate kinase; struc 96.7 0.00053 1.8E-08 62.0 2.2 33 68-101 6-38 (175)
217 2v54_A DTMP kinase, thymidylat 96.7 0.0009 3.1E-08 61.4 3.7 32 67-98 5-36 (204)
218 2iyv_A Shikimate kinase, SK; t 96.7 0.00045 1.5E-08 62.7 1.5 33 68-101 4-36 (184)
219 1np6_A Molybdopterin-guanine d 96.7 0.0014 4.7E-08 60.9 4.8 34 67-100 7-44 (174)
220 3iij_A Coilin-interacting nucl 96.7 0.00055 1.9E-08 62.0 2.1 33 68-101 13-45 (180)
221 1zd8_A GTP:AMP phosphotransfer 96.7 0.00072 2.5E-08 63.9 2.8 35 66-101 7-41 (227)
222 1ls1_A Signal recognition part 96.7 0.00066 2.3E-08 67.9 2.7 42 54-100 91-133 (295)
223 1nks_A Adenylate kinase; therm 96.7 0.0008 2.7E-08 60.7 3.0 25 67-91 2-26 (194)
224 2vli_A Antibiotic resistance p 96.7 0.00064 2.2E-08 61.3 2.3 26 66-91 5-30 (183)
225 1e6c_A Shikimate kinase; phosp 96.7 0.00059 2E-08 60.9 2.1 33 68-101 4-36 (173)
226 2dr3_A UPF0273 protein PH0284; 96.6 0.0013 4.5E-08 61.7 4.5 38 59-99 19-58 (247)
227 2z0h_A DTMP kinase, thymidylat 96.6 0.0008 2.7E-08 61.2 2.8 23 68-90 2-24 (197)
228 3crm_A TRNA delta(2)-isopenten 96.6 0.0018 6.2E-08 66.1 5.7 35 67-102 6-40 (323)
229 2yvu_A Probable adenylyl-sulfa 96.6 0.00082 2.8E-08 61.3 2.8 24 67-90 14-37 (186)
230 1xjc_A MOBB protein homolog; s 96.6 0.0014 4.8E-08 60.9 4.3 34 66-99 4-41 (169)
231 2wwf_A Thymidilate kinase, put 96.6 0.00077 2.6E-08 62.2 2.5 25 66-90 10-34 (212)
232 1nn5_A Similar to deoxythymidy 96.6 0.00079 2.7E-08 62.2 2.5 24 67-90 10-33 (215)
233 1aky_A Adenylate kinase; ATP:A 96.6 0.00083 2.8E-08 63.1 2.7 35 66-101 4-38 (220)
234 3dl0_A Adenylate kinase; phosp 96.6 0.00091 3.1E-08 62.4 3.0 33 68-101 2-34 (216)
235 3fb4_A Adenylate kinase; psych 96.6 0.00075 2.6E-08 62.8 2.3 33 68-101 2-34 (216)
236 3exa_A TRNA delta(2)-isopenten 96.6 0.0018 6.3E-08 66.1 5.3 35 66-101 3-37 (322)
237 3tlx_A Adenylate kinase 2; str 96.6 0.001 3.4E-08 64.2 3.2 36 65-101 28-63 (243)
238 2o5v_A DNA replication and rep 96.6 0.001 3.4E-08 68.8 3.3 35 52-90 16-50 (359)
239 2pbr_A DTMP kinase, thymidylat 96.6 0.00097 3.3E-08 60.3 2.8 32 68-99 2-35 (195)
240 1gtv_A TMK, thymidylate kinase 96.5 0.00044 1.5E-08 64.0 0.4 23 68-90 2-24 (214)
241 2pt5_A Shikimate kinase, SK; a 96.5 0.00096 3.3E-08 59.4 2.6 33 68-101 2-34 (168)
242 3k1j_A LON protease, ATP-depen 96.5 0.00051 1.7E-08 75.1 0.7 54 43-99 40-95 (604)
243 1w1w_A Structural maintenance 96.5 0.0015 5.2E-08 68.1 4.2 28 60-90 23-50 (430)
244 2p67_A LAO/AO transport system 96.5 0.00085 2.9E-08 68.2 2.2 39 49-90 42-80 (341)
245 1ni3_A YCHF GTPase, YCHF GTP-b 96.5 0.0022 7.4E-08 67.1 5.1 37 61-100 18-67 (392)
246 3foz_A TRNA delta(2)-isopenten 96.5 0.0024 8.3E-08 65.1 5.3 35 66-101 10-44 (316)
247 3m6a_A ATP-dependent protease 96.5 0.00075 2.6E-08 73.1 1.6 48 50-101 96-144 (543)
248 1f2t_A RAD50 ABC-ATPase; DNA d 96.4 0.0016 5.3E-08 58.6 3.4 23 68-90 25-47 (149)
249 2px0_A Flagellar biosynthesis 96.4 0.0017 5.7E-08 65.1 3.7 26 62-90 104-129 (296)
250 1sxj_E Activator 1 40 kDa subu 96.4 0.0014 4.9E-08 65.4 3.1 40 61-101 32-73 (354)
251 3a8t_A Adenylate isopentenyltr 96.4 0.0028 9.4E-08 65.2 5.2 35 66-101 40-74 (339)
252 1zuh_A Shikimate kinase; alpha 96.3 0.0017 5.9E-08 58.1 3.1 33 68-101 9-41 (168)
253 1sxj_C Activator 1 40 kDa subu 96.3 0.00026 8.7E-09 71.2 -3.0 49 41-90 22-70 (340)
254 1zak_A Adenylate kinase; ATP:A 96.3 0.0013 4.5E-08 61.8 2.0 26 66-91 5-30 (222)
255 3lda_A DNA repair protein RAD5 96.2 0.0035 1.2E-07 65.6 5.2 39 60-101 175-221 (400)
256 3hr8_A Protein RECA; alpha and 96.2 0.0028 9.5E-08 65.5 4.1 39 60-101 58-98 (356)
257 2wji_A Ferrous iron transport 96.1 0.003 1E-07 56.1 3.5 25 66-90 3-27 (165)
258 3a4m_A L-seryl-tRNA(SEC) kinas 96.1 0.0031 1.1E-07 61.2 3.9 25 66-90 4-28 (260)
259 3be4_A Adenylate kinase; malar 96.1 0.0019 6.6E-08 60.7 2.4 35 66-101 5-39 (217)
260 2xb4_A Adenylate kinase; ATP-b 96.1 0.0022 7.6E-08 60.7 2.6 33 68-101 2-34 (223)
261 2wjg_A FEOB, ferrous iron tran 96.0 0.0038 1.3E-07 55.9 3.7 25 65-89 6-30 (188)
262 3eph_A TRNA isopentenyltransfe 96.0 0.0039 1.3E-07 65.6 4.3 34 67-101 3-36 (409)
263 2ocp_A DGK, deoxyguanosine kin 96.0 0.005 1.7E-07 58.7 4.7 47 177-228 149-196 (241)
264 2www_A Methylmalonic aciduria 96.0 0.0047 1.6E-07 63.1 4.7 25 66-90 74-98 (349)
265 1ak2_A Adenylate kinase isoenz 96.0 0.0026 9E-08 60.4 2.7 35 66-101 16-50 (233)
266 1e4v_A Adenylate kinase; trans 96.0 0.0022 7.5E-08 60.0 2.0 33 68-101 2-34 (214)
267 2vf7_A UVRA2, excinuclease ABC 96.0 0.0034 1.2E-07 71.7 3.8 65 142-213 374-440 (842)
268 2dhr_A FTSH; AAA+ protein, hex 95.9 0.0035 1.2E-07 67.5 3.2 44 52-101 55-98 (499)
269 2ygr_A Uvrabc system protein A 95.9 0.0037 1.3E-07 72.4 3.5 51 30-83 13-63 (993)
270 3cf0_A Transitional endoplasmi 95.9 0.0066 2.2E-07 60.2 4.9 36 61-100 47-82 (301)
271 3umf_A Adenylate kinase; rossm 95.9 0.0043 1.5E-07 59.7 3.4 38 61-99 24-61 (217)
272 3qkt_A DNA double-strand break 95.8 0.0055 1.9E-07 62.0 4.1 23 68-90 25-47 (339)
273 2ffh_A Protein (FFH); SRP54, s 95.7 0.0049 1.7E-07 65.1 3.5 32 54-90 91-122 (425)
274 2gj8_A MNME, tRNA modification 95.7 0.0055 1.9E-07 55.0 3.3 23 67-89 5-27 (172)
275 3pih_A Uvrabc system protein A 95.7 0.0039 1.3E-07 71.7 2.8 29 52-83 13-41 (916)
276 2r6f_A Excinuclease ABC subuni 95.7 0.0048 1.6E-07 71.2 3.4 29 52-83 33-61 (972)
277 1lv7_A FTSH; alpha/beta domain 95.6 0.0059 2E-07 58.5 3.4 23 68-90 47-69 (257)
278 3kl4_A SRP54, signal recogniti 95.6 0.0088 3E-07 63.3 4.8 37 65-101 96-136 (433)
279 3zvl_A Bifunctional polynucleo 95.6 0.0046 1.6E-07 64.6 2.5 26 65-90 257-282 (416)
280 3qks_A DNA double-strand break 95.6 0.0075 2.6E-07 56.7 3.8 23 68-90 25-47 (203)
281 1p5z_B DCK, deoxycytidine kina 95.5 0.0062 2.1E-07 58.9 3.2 29 65-93 23-51 (263)
282 1m2o_B GTP-binding protein SAR 95.5 0.0058 2E-07 55.7 2.8 35 51-89 12-46 (190)
283 2zej_A Dardarin, leucine-rich 95.5 0.0055 1.9E-07 55.3 2.6 23 67-89 3-25 (184)
284 1j8m_F SRP54, signal recogniti 95.5 0.0062 2.1E-07 61.0 3.1 31 56-90 92-122 (297)
285 1ega_A Protein (GTP-binding pr 95.5 0.0056 1.9E-07 61.1 2.6 23 67-89 9-31 (301)
286 1kao_A RAP2A; GTP-binding prot 95.4 0.01 3.5E-07 51.2 3.9 24 66-89 3-26 (167)
287 3sr0_A Adenylate kinase; phosp 95.4 0.0062 2.1E-07 57.8 2.6 32 68-100 2-33 (206)
288 3bc1_A RAS-related protein RAB 95.4 0.011 3.8E-07 52.5 4.1 27 63-89 8-34 (195)
289 1z2a_A RAS-related protein RAB 95.4 0.011 3.6E-07 51.4 3.9 26 65-90 4-29 (168)
290 2zr9_A Protein RECA, recombina 95.4 0.011 3.6E-07 60.7 4.4 28 60-90 58-85 (349)
291 2ce2_X GTPase HRAS; signaling 95.3 0.0099 3.4E-07 51.1 3.5 25 66-90 3-27 (166)
292 3ice_A Transcription terminati 95.3 0.0063 2.2E-07 64.0 2.6 48 40-90 136-198 (422)
293 4dsu_A GTPase KRAS, isoform 2B 95.3 0.011 3.9E-07 52.4 3.9 26 65-90 3-28 (189)
294 1u8z_A RAS-related protein RAL 95.3 0.012 4E-07 50.8 3.9 24 66-89 4-27 (168)
295 3lxx_A GTPase IMAP family memb 95.3 0.01 3.6E-07 56.2 3.8 27 64-90 27-53 (239)
296 2ged_A SR-beta, signal recogni 95.3 0.01 3.5E-07 53.4 3.5 27 64-90 46-72 (193)
297 2qmh_A HPR kinase/phosphorylas 95.2 0.016 5.5E-07 55.6 4.9 31 68-100 36-66 (205)
298 1ky3_A GTP-binding protein YPT 95.2 0.013 4.3E-07 51.6 3.9 26 65-90 7-32 (182)
299 1c1y_A RAS-related protein RAP 95.2 0.013 4.3E-07 50.9 3.9 24 66-89 3-26 (167)
300 1jbk_A CLPB protein; beta barr 95.2 0.011 3.6E-07 52.2 3.4 23 68-90 45-67 (195)
301 3t34_A Dynamin-related protein 95.2 0.0078 2.7E-07 61.1 2.8 33 51-89 25-57 (360)
302 1ek0_A Protein (GTP-binding pr 95.2 0.013 4.3E-07 50.9 3.8 25 66-90 3-27 (170)
303 1mky_A Probable GTP-binding pr 95.2 0.017 5.7E-07 60.5 5.4 26 65-90 179-204 (439)
304 1njg_A DNA polymerase III subu 95.2 0.0025 8.6E-08 58.2 -0.8 38 53-90 32-69 (250)
305 3bos_A Putative DNA replicatio 95.2 0.013 4.3E-07 54.3 3.9 23 68-90 54-76 (242)
306 2erx_A GTP-binding protein DI- 95.2 0.013 4.4E-07 50.9 3.8 24 66-89 3-26 (172)
307 1z0j_A RAB-22, RAS-related pro 95.2 0.014 4.6E-07 50.8 3.8 26 65-90 5-30 (170)
308 2fn4_A P23, RAS-related protei 95.2 0.014 4.7E-07 51.3 3.9 26 64-89 7-32 (181)
309 3con_A GTPase NRAS; structural 95.1 0.014 4.8E-07 52.3 3.9 27 63-89 18-44 (190)
310 1z08_A RAS-related protein RAB 95.1 0.014 4.8E-07 50.8 3.8 25 65-89 5-29 (170)
311 3dm5_A SRP54, signal recogniti 95.1 0.016 5.4E-07 61.6 4.8 37 65-101 99-139 (443)
312 2z43_A DNA repair and recombin 95.1 0.019 6.6E-07 57.6 5.3 29 59-90 103-131 (324)
313 2nzj_A GTP-binding protein REM 95.1 0.014 4.7E-07 51.2 3.6 24 66-89 4-27 (175)
314 2w58_A DNAI, primosome compone 95.1 0.012 4.2E-07 53.9 3.4 24 67-90 55-78 (202)
315 1wms_A RAB-9, RAB9, RAS-relate 95.0 0.015 5.1E-07 51.2 3.8 26 65-90 6-31 (177)
316 2lkc_A Translation initiation 95.0 0.013 4.3E-07 51.7 3.3 25 65-89 7-31 (178)
317 3clv_A RAB5 protein, putative; 95.0 0.015 5.3E-07 51.7 3.9 26 65-90 6-31 (208)
318 3k53_A Ferrous iron transport 95.0 0.012 4E-07 57.3 3.4 25 66-90 3-27 (271)
319 1r2q_A RAS-related protein RAB 95.0 0.016 5.3E-07 50.3 3.8 25 65-89 5-29 (170)
320 2wsm_A Hydrogenase expression/ 95.0 0.014 4.6E-07 54.1 3.6 26 65-90 29-54 (221)
321 1upt_A ARL1, ADP-ribosylation 95.0 0.016 5.6E-07 50.5 3.9 25 65-89 6-30 (171)
322 3p32_A Probable GTPase RV1496/ 95.0 0.02 6.9E-07 58.3 5.1 37 63-99 76-116 (355)
323 1g16_A RAS-related protein SEC 95.0 0.015 5E-07 50.6 3.5 25 66-90 3-27 (170)
324 2hxs_A RAB-26, RAS-related pro 95.0 0.019 6.4E-07 50.6 4.2 25 65-89 5-29 (178)
325 3auy_A DNA double-strand break 95.0 0.014 4.9E-07 59.7 4.0 23 68-90 27-49 (371)
326 3b9p_A CG5977-PA, isoform A; A 94.9 0.016 5.5E-07 56.4 4.0 23 68-90 56-78 (297)
327 2dyk_A GTP-binding protein; GT 94.9 0.017 6E-07 49.8 3.8 24 67-90 2-25 (161)
328 2oil_A CATX-8, RAS-related pro 94.9 0.019 6.5E-07 51.7 4.2 27 64-90 23-49 (193)
329 3q85_A GTP-binding protein REM 94.9 0.016 5.5E-07 50.5 3.5 24 66-89 2-25 (169)
330 1ypw_A Transitional endoplasmi 94.8 0.013 4.5E-07 66.4 3.6 38 59-100 234-271 (806)
331 4ad8_A DNA repair protein RECN 94.8 0.0062 2.1E-07 65.2 0.6 35 52-90 50-84 (517)
332 4fcw_A Chaperone protein CLPB; 94.8 0.017 5.8E-07 56.3 3.7 24 67-90 48-71 (311)
333 2gf0_A GTP-binding protein DI- 94.8 0.019 6.6E-07 51.6 3.8 26 64-89 6-31 (199)
334 2p65_A Hypothetical protein PF 94.8 0.013 4.4E-07 51.8 2.6 23 68-90 45-67 (187)
335 2a9k_A RAS-related protein RAL 94.7 0.02 6.9E-07 50.5 3.9 25 65-89 17-41 (187)
336 3tw8_B RAS-related protein RAB 94.7 0.014 4.8E-07 51.3 2.7 26 64-89 7-32 (181)
337 1z0f_A RAB14, member RAS oncog 94.7 0.023 7.8E-07 49.8 4.1 27 64-90 13-39 (179)
338 2y8e_A RAB-protein 6, GH09086P 94.7 0.018 6.2E-07 50.5 3.4 25 65-89 13-37 (179)
339 1svi_A GTP-binding protein YSX 94.7 0.014 4.8E-07 52.4 2.7 26 64-89 21-46 (195)
340 2g6b_A RAS-related protein RAB 94.7 0.021 7.1E-07 50.4 3.8 27 64-90 8-34 (180)
341 3h4m_A Proteasome-activating n 94.7 0.02 6.9E-07 55.2 4.0 23 68-90 53-75 (285)
342 3ld9_A DTMP kinase, thymidylat 94.7 0.018 6E-07 55.6 3.5 27 65-91 20-46 (223)
343 3kkq_A RAS-related protein M-R 94.6 0.026 9E-07 50.1 4.2 26 64-89 16-41 (183)
344 2efe_B Small GTP-binding prote 94.6 0.024 8.1E-07 50.0 3.8 26 64-89 10-35 (181)
345 4edh_A DTMP kinase, thymidylat 94.6 0.019 6.4E-07 54.7 3.4 24 67-90 7-30 (213)
346 2zts_A Putative uncharacterize 94.6 0.025 8.5E-07 52.9 4.2 26 60-88 27-52 (251)
347 2bov_A RAla, RAS-related prote 94.5 0.024 8.1E-07 51.2 3.9 25 65-89 13-37 (206)
348 3tkl_A RAS-related protein RAB 94.5 0.027 9.3E-07 50.4 4.1 26 64-89 14-39 (196)
349 2hf9_A Probable hydrogenase ni 94.5 0.021 7.3E-07 52.9 3.5 26 65-90 37-62 (226)
350 3v9p_A DTMP kinase, thymidylat 94.5 0.014 4.6E-07 56.5 2.2 23 68-90 27-49 (227)
351 2bme_A RAB4A, RAS-related prot 94.5 0.022 7.4E-07 50.7 3.4 26 64-89 8-33 (186)
352 3t15_A Ribulose bisphosphate c 94.5 0.014 4.9E-07 57.7 2.4 27 64-90 34-60 (293)
353 1nrj_B SR-beta, signal recogni 94.5 0.021 7.3E-07 52.5 3.5 27 64-90 10-36 (218)
354 1vg8_A RAS-related protein RAB 94.5 0.026 8.7E-07 51.2 3.9 26 65-90 7-32 (207)
355 3pqc_A Probable GTP-binding pr 94.5 0.017 5.9E-07 51.5 2.7 25 65-89 22-46 (195)
356 1m8p_A Sulfate adenylyltransfe 94.4 0.02 6.9E-07 62.5 3.7 30 62-91 392-421 (573)
357 3n70_A Transport activator; si 94.4 0.022 7.5E-07 50.1 3.3 23 68-90 26-48 (145)
358 1mh1_A RAC1; GTP-binding, GTPa 94.4 0.026 8.9E-07 49.9 3.8 24 66-89 5-28 (186)
359 2gf9_A RAS-related protein RAB 94.4 0.028 9.5E-07 50.5 4.0 26 64-89 20-45 (189)
360 3t1o_A Gliding protein MGLA; G 94.4 0.028 9.5E-07 50.1 3.9 27 64-90 12-38 (198)
361 3t5g_A GTP-binding protein RHE 94.4 0.024 8.1E-07 50.3 3.4 24 65-88 5-28 (181)
362 2qtf_A Protein HFLX, GTP-bindi 94.4 0.03 1E-06 57.6 4.7 23 68-90 181-203 (364)
363 3q72_A GTP-binding protein RAD 94.4 0.015 5E-07 50.7 2.0 23 67-89 3-25 (166)
364 2qz4_A Paraplegin; AAA+, SPG7, 94.4 0.023 7.9E-07 53.8 3.5 23 68-90 41-63 (262)
365 1z06_A RAS-related protein RAB 94.4 0.028 9.7E-07 50.5 3.9 26 64-89 18-43 (189)
366 3ihw_A Centg3; RAS, centaurin, 94.4 0.028 9.6E-07 50.9 3.9 26 64-89 18-43 (184)
367 1v5w_A DMC1, meiotic recombina 94.3 0.023 7.7E-07 57.8 3.6 27 60-89 119-145 (343)
368 2a5j_A RAS-related protein RAB 94.3 0.031 1.1E-06 50.4 4.1 28 63-90 18-45 (191)
369 2p5s_A RAS and EF-hand domain 94.3 0.028 9.5E-07 51.2 3.9 29 62-90 24-52 (199)
370 1r8s_A ADP-ribosylation factor 94.3 0.025 8.6E-07 49.0 3.3 22 68-89 2-23 (164)
371 1moz_A ARL1, ADP-ribosylation 94.3 0.017 5.8E-07 51.2 2.2 24 64-87 16-39 (183)
372 3reg_A RHO-like small GTPase; 94.3 0.03 1E-06 50.5 3.9 29 62-90 19-47 (194)
373 1ksh_A ARF-like protein 2; sma 94.3 0.024 8.3E-07 50.6 3.2 26 64-89 16-41 (186)
374 1sxj_D Activator 1 41 kDa subu 94.2 0.007 2.4E-07 60.0 -0.5 42 48-90 41-82 (353)
375 1x3s_A RAS-related protein RAB 94.2 0.03 1E-06 50.0 3.8 25 66-90 15-39 (195)
376 1m7b_A RND3/RHOE small GTP-bin 94.2 0.027 9.3E-07 50.5 3.5 25 65-89 6-30 (184)
377 1fnn_A CDC6P, cell division co 94.2 0.026 8.8E-07 56.4 3.7 23 68-90 46-68 (389)
378 3lv8_A DTMP kinase, thymidylat 94.2 0.021 7.3E-07 55.4 3.0 24 67-90 28-51 (236)
379 2fg5_A RAB-22B, RAS-related pr 94.2 0.027 9.2E-07 51.0 3.5 25 65-89 22-46 (192)
380 2ohf_A Protein OLA1, GTP-bindi 94.2 0.029 9.9E-07 58.8 4.1 22 68-89 24-45 (396)
381 2qby_A CDC6 homolog 1, cell di 94.2 0.021 7.3E-07 56.6 3.0 25 66-90 45-69 (386)
382 4ag6_A VIRB4 ATPase, type IV s 94.2 0.027 9.4E-07 57.6 3.8 23 68-90 37-59 (392)
383 2chg_A Replication factor C sm 94.2 0.026 9E-07 50.8 3.3 23 68-90 40-62 (226)
384 1f6b_A SAR1; gtpases, N-termin 94.2 0.017 5.8E-07 53.0 2.0 34 51-88 14-47 (198)
385 2axn_A 6-phosphofructo-2-kinas 94.2 0.023 7.9E-07 61.3 3.4 37 65-101 34-74 (520)
386 2xtp_A GTPase IMAP family memb 94.2 0.026 8.9E-07 54.0 3.4 26 64-89 20-45 (260)
387 1x6v_B Bifunctional 3'-phospho 94.2 0.032 1.1E-06 61.8 4.5 37 65-101 51-89 (630)
388 1xwi_A SKD1 protein; VPS4B, AA 94.1 0.04 1.4E-06 55.3 4.8 32 68-99 47-78 (322)
389 1fzq_A ADP-ribosylation factor 94.1 0.027 9.3E-07 50.6 3.2 26 64-89 14-39 (181)
390 3oes_A GTPase rhebl1; small GT 94.1 0.03 1E-06 51.1 3.5 26 65-90 23-48 (201)
391 2r6a_A DNAB helicase, replicat 94.1 0.03 1E-06 58.9 4.0 36 52-90 192-227 (454)
392 3bwd_D RAC-like GTP-binding pr 94.1 0.03 1E-06 49.4 3.5 24 66-89 8-31 (182)
393 1l8q_A Chromosomal replication 94.1 0.026 8.8E-07 55.9 3.3 23 68-90 39-61 (324)
394 3syl_A Protein CBBX; photosynt 94.1 0.023 8E-07 55.4 2.9 24 67-90 68-91 (309)
395 1c9k_A COBU, adenosylcobinamid 94.0 0.022 7.5E-07 53.4 2.5 22 68-89 1-22 (180)
396 2cxx_A Probable GTP-binding pr 94.0 0.022 7.4E-07 50.7 2.4 22 68-89 3-24 (190)
397 3lxw_A GTPase IMAP family memb 94.0 0.031 1.1E-06 53.8 3.7 27 64-90 19-45 (247)
398 1zd9_A ADP-ribosylation factor 94.0 0.034 1.2E-06 50.1 3.8 25 65-89 21-45 (188)
399 1zj6_A ADP-ribosylation factor 94.0 0.03 1E-06 50.2 3.4 26 64-89 14-39 (187)
400 2atv_A RERG, RAS-like estrogen 94.0 0.037 1.3E-06 50.1 3.9 26 64-89 26-51 (196)
401 3c5c_A RAS-like protein 12; GD 94.0 0.037 1.3E-06 50.0 3.9 26 64-89 19-44 (187)
402 2v3c_C SRP54, signal recogniti 93.9 0.02 7E-07 60.4 2.4 36 66-101 99-138 (432)
403 3b1v_A Ferrous iron uptake tra 93.9 0.031 1.1E-06 55.0 3.5 24 66-89 3-26 (272)
404 3cph_A RAS-related protein SEC 93.9 0.038 1.3E-06 50.3 3.8 25 65-89 19-43 (213)
405 1d2n_A N-ethylmaleimide-sensit 93.9 0.036 1.2E-06 53.4 3.9 26 65-90 63-88 (272)
406 4tmk_A Protein (thymidylate ki 93.9 0.028 9.6E-07 53.6 3.0 23 68-90 5-27 (213)
407 2iwr_A Centaurin gamma 1; ANK 93.9 0.031 1.1E-06 49.4 3.1 25 65-89 6-30 (178)
408 1zbd_A Rabphilin-3A; G protein 93.9 0.037 1.3E-06 50.2 3.6 24 66-89 8-31 (203)
409 3llm_A ATP-dependent RNA helic 93.8 0.027 9.4E-07 53.4 2.9 25 60-87 73-97 (235)
410 1ko7_A HPR kinase/phosphatase; 93.8 0.049 1.7E-06 55.4 4.8 36 50-89 132-167 (314)
411 2h17_A ADP-ribosylation factor 93.8 0.029 9.9E-07 50.1 2.8 26 64-89 19-44 (181)
412 2j37_W Signal recognition part 93.8 0.048 1.7E-06 58.7 5.0 38 64-101 99-140 (504)
413 3hws_A ATP-dependent CLP prote 93.8 0.033 1.1E-06 56.3 3.5 23 68-90 53-75 (363)
414 4bas_A ADP-ribosylation factor 93.8 0.03 1E-06 50.3 2.9 27 63-89 14-40 (199)
415 3cbq_A GTP-binding protein REM 93.8 0.032 1.1E-06 51.1 3.1 26 63-88 20-45 (195)
416 2fh5_B SR-beta, signal recogni 93.8 0.035 1.2E-06 50.9 3.4 26 65-90 6-31 (214)
417 2bcg_Y Protein YP2, GTP-bindin 93.7 0.036 1.2E-06 50.5 3.4 27 64-90 6-32 (206)
418 3gmt_A Adenylate kinase; ssgci 93.7 0.029 9.8E-07 54.6 2.8 32 68-100 10-41 (230)
419 1u94_A RECA protein, recombina 93.7 0.05 1.7E-06 55.9 4.7 28 60-90 60-87 (356)
420 3dz8_A RAS-related protein RAB 93.7 0.039 1.3E-06 49.7 3.4 26 65-90 22-47 (191)
421 2qu8_A Putative nucleolar GTP- 93.6 0.035 1.2E-06 51.9 3.2 26 64-89 27-52 (228)
422 2r62_A Cell division protease 93.6 0.018 6.2E-07 55.1 1.2 23 68-90 46-68 (268)
423 3tmk_A Thymidylate kinase; pho 93.6 0.032 1.1E-06 53.4 3.0 25 68-92 7-31 (216)
424 2o52_A RAS-related protein RAB 93.6 0.035 1.2E-06 50.8 3.1 26 64-89 23-48 (200)
425 2ew1_A RAS-related protein RAB 93.6 0.039 1.3E-06 51.0 3.4 27 64-90 24-50 (201)
426 2i1q_A DNA repair and recombin 93.6 0.036 1.2E-06 55.2 3.4 27 60-89 95-121 (322)
427 3bh0_A DNAB-like replicative h 93.6 0.042 1.4E-06 55.0 3.8 35 53-90 58-92 (315)
428 2f7s_A C25KG, RAS-related prot 93.6 0.047 1.6E-06 50.1 3.9 27 64-90 23-49 (217)
429 1ofh_A ATP-dependent HSL prote 93.6 0.032 1.1E-06 54.0 2.8 23 68-90 52-74 (310)
430 2q3h_A RAS homolog gene family 93.5 0.043 1.5E-06 49.7 3.5 25 65-89 19-43 (201)
431 3i8s_A Ferrous iron transport 93.5 0.039 1.3E-06 54.0 3.4 25 66-90 3-27 (274)
432 2il1_A RAB12; G-protein, GDP, 93.5 0.049 1.7E-06 49.3 3.8 26 64-89 24-49 (192)
433 2h57_A ADP-ribosylation factor 93.5 0.026 8.9E-07 50.8 2.0 26 64-89 19-44 (190)
434 2j1l_A RHO-related GTP-binding 93.5 0.039 1.3E-06 51.0 3.2 26 64-89 32-57 (214)
435 3bhd_A Thtpase, thiamine triph 93.5 0.24 8.2E-06 47.8 8.9 130 280-414 54-220 (234)
436 1yrb_A ATP(GTP)binding protein 93.5 0.045 1.5E-06 52.0 3.7 38 62-99 10-50 (262)
437 2fv8_A H6, RHO-related GTP-bin 93.5 0.044 1.5E-06 50.3 3.5 25 65-89 24-48 (207)
438 4dhe_A Probable GTP-binding pr 93.4 0.019 6.3E-07 53.0 0.8 25 65-89 28-52 (223)
439 3a1s_A Iron(II) transport prot 93.4 0.047 1.6E-06 53.1 3.7 25 66-90 5-29 (258)
440 2e87_A Hypothetical protein PH 93.4 0.03 1E-06 56.8 2.4 26 65-90 166-191 (357)
441 2fu5_C RAS-related protein RAB 93.3 0.03 1E-06 49.7 2.1 25 65-89 7-31 (183)
442 1gwn_A RHO-related GTP-binding 93.3 0.048 1.7E-06 50.5 3.5 26 64-89 26-51 (205)
443 2cjw_A GTP-binding protein GEM 93.3 0.058 2E-06 49.2 4.0 24 66-89 6-29 (192)
444 3iev_A GTP-binding protein ERA 93.3 0.051 1.7E-06 54.2 3.9 25 65-89 9-33 (308)
445 2atx_A Small GTP binding prote 93.3 0.05 1.7E-06 48.9 3.5 25 65-89 17-41 (194)
446 2z4s_A Chromosomal replication 93.2 0.035 1.2E-06 58.3 2.7 24 67-90 131-154 (440)
447 3llu_A RAS-related GTP-binding 93.2 0.042 1.4E-06 49.9 2.8 30 61-90 15-44 (196)
448 2v1u_A Cell division control p 93.2 0.039 1.3E-06 54.8 2.8 25 66-90 44-68 (387)
449 1wf3_A GTP-binding protein; GT 93.1 0.051 1.8E-06 54.2 3.6 24 66-89 7-30 (301)
450 3def_A T7I23.11 protein; chlor 93.1 0.049 1.7E-06 52.6 3.4 27 63-89 33-59 (262)
451 2hup_A RAS-related protein RAB 93.1 0.058 2E-06 49.4 3.7 27 64-90 27-53 (201)
452 2b6h_A ADP-ribosylation factor 93.1 0.05 1.7E-06 49.4 3.2 25 64-88 27-51 (192)
453 2gco_A H9, RHO-related GTP-bin 93.1 0.054 1.8E-06 49.4 3.4 25 65-89 24-48 (201)
454 4gzl_A RAS-related C3 botulinu 93.1 0.054 1.9E-06 49.7 3.5 26 64-89 28-53 (204)
455 1h65_A Chloroplast outer envel 93.0 0.057 2E-06 52.3 3.7 28 62-89 35-62 (270)
456 1um8_A ATP-dependent CLP prote 93.0 0.053 1.8E-06 55.0 3.5 23 68-90 74-96 (376)
457 3pfi_A Holliday junction ATP-d 93.0 0.053 1.8E-06 53.7 3.5 25 66-90 55-79 (338)
458 3tqf_A HPR(Ser) kinase; transf 93.0 0.065 2.2E-06 50.4 3.8 22 68-89 18-39 (181)
459 1bif_A 6-phosphofructo-2-kinas 93.0 0.059 2E-06 56.9 3.9 26 65-90 38-63 (469)
460 2ce7_A Cell division protein F 92.9 0.05 1.7E-06 58.2 3.4 23 68-90 51-73 (476)
461 2ius_A DNA translocase FTSK; n 92.9 0.062 2.1E-06 58.0 4.1 31 55-88 159-189 (512)
462 2zan_A Vacuolar protein sortin 92.9 0.086 2.9E-06 55.3 5.1 33 67-99 168-200 (444)
463 2bjv_A PSP operon transcriptio 92.9 0.058 2E-06 51.7 3.5 24 68-91 31-54 (265)
464 2qby_B CDC6 homolog 3, cell di 92.9 0.055 1.9E-06 54.1 3.5 26 65-90 44-69 (384)
465 2qag_A Septin-2, protein NEDD5 92.9 0.037 1.3E-06 56.7 2.2 23 67-89 38-60 (361)
466 3d8b_A Fidgetin-like protein 1 92.8 0.057 1.9E-06 54.8 3.5 25 66-90 117-141 (357)
467 4hlc_A DTMP kinase, thymidylat 92.8 0.051 1.7E-06 51.3 2.9 23 68-90 4-26 (205)
468 1tue_A Replication protein E1; 92.8 0.044 1.5E-06 52.9 2.4 23 68-90 60-82 (212)
469 3eie_A Vacuolar protein sortin 92.8 0.055 1.9E-06 53.9 3.3 24 67-90 52-75 (322)
470 1g8f_A Sulfate adenylyltransfe 92.8 0.047 1.6E-06 58.9 2.9 26 66-91 395-420 (511)
471 2gks_A Bifunctional SAT/APS ki 92.8 0.052 1.8E-06 58.9 3.3 27 64-90 370-396 (546)
472 1dek_A Deoxynucleoside monopho 92.8 0.069 2.4E-06 52.1 3.8 24 67-90 2-25 (241)
473 2yc2_C IFT27, small RAB-relate 92.7 0.029 9.9E-07 50.6 1.0 24 66-89 20-43 (208)
474 2dy1_A Elongation factor G; tr 92.7 0.046 1.6E-06 60.6 2.7 28 60-90 6-33 (665)
475 2x77_A ADP-ribosylation factor 92.7 0.046 1.6E-06 49.0 2.2 24 64-87 20-43 (189)
476 1jwy_B Dynamin A GTPase domain 92.6 0.054 1.8E-06 53.1 2.9 23 67-89 25-47 (315)
477 2j0v_A RAC-like GTP-binding pr 92.6 0.07 2.4E-06 48.7 3.5 25 65-89 8-32 (212)
478 3cpj_B GTP-binding protein YPT 92.6 0.079 2.7E-06 49.2 3.9 27 64-90 11-37 (223)
479 3uk6_A RUVB-like 2; hexameric 92.6 0.054 1.8E-06 54.1 2.9 25 67-91 71-95 (368)
480 4b4t_K 26S protease regulatory 92.6 0.088 3E-06 55.6 4.6 33 67-100 207-239 (428)
481 3hjn_A DTMP kinase, thymidylat 92.5 0.057 2E-06 50.5 2.8 23 68-90 2-24 (197)
482 3t5d_A Septin-7; GTP-binding p 92.5 0.064 2.2E-06 52.2 3.2 24 66-89 8-31 (274)
483 3iby_A Ferrous iron transport 92.5 0.057 1.9E-06 52.5 2.8 23 68-90 3-25 (256)
484 3co5_A Putative two-component 92.4 0.026 8.8E-07 49.6 0.3 24 68-91 29-52 (143)
485 2dby_A GTP-binding protein; GD 92.3 0.068 2.3E-06 55.3 3.3 22 68-89 3-24 (368)
486 1jal_A YCHF protein; nucleotid 92.3 0.1 3.4E-06 54.0 4.5 22 68-89 4-25 (363)
487 3q3j_B RHO-related GTP-binding 92.2 0.092 3.1E-06 48.7 3.8 25 65-89 26-50 (214)
488 1g41_A Heat shock protein HSLU 92.2 0.095 3.3E-06 55.6 4.4 31 68-99 52-82 (444)
489 4b4t_M 26S protease regulatory 92.2 0.1 3.5E-06 55.2 4.5 34 66-100 215-248 (434)
490 4djt_A GTP-binding nuclear pro 92.2 0.035 1.2E-06 51.0 0.9 25 64-88 9-33 (218)
491 1jr3_A DNA polymerase III subu 92.2 0.018 6E-07 57.5 -1.3 31 60-90 32-62 (373)
492 2qp9_X Vacuolar protein sortin 92.1 0.074 2.5E-06 54.0 3.3 23 68-90 86-108 (355)
493 3u61_B DNA polymerase accessor 92.1 0.064 2.2E-06 52.8 2.8 37 54-90 36-72 (324)
494 2aka_B Dynamin-1; fusion prote 92.1 0.066 2.3E-06 51.8 2.7 25 66-90 26-50 (299)
495 4b4t_J 26S protease regulatory 92.1 0.11 3.7E-06 54.6 4.5 33 67-100 183-215 (405)
496 1g8p_A Magnesium-chelatase 38 91.9 0.052 1.8E-06 53.6 1.8 25 68-92 47-71 (350)
497 1hqc_A RUVB; extended AAA-ATPa 91.9 0.06 2E-06 52.7 2.2 23 68-90 40-62 (324)
498 2r44_A Uncharacterized protein 91.9 0.069 2.4E-06 52.9 2.7 34 55-91 38-71 (331)
499 4b4t_L 26S protease subunit RP 91.9 0.12 4.1E-06 54.7 4.6 24 67-90 216-239 (437)
500 2q6t_A DNAB replication FORK h 91.9 0.086 2.9E-06 55.2 3.5 28 60-90 197-224 (444)
No 1
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.92 E-value=4.3e-25 Score=225.96 Aligned_cols=205 Identities=19% Similarity=0.204 Sum_probs=165.0
Q ss_pred eeeeeeEEEeCcEEEeeeeceeeec---CCccEEEEEECCCCCcHHHHHHHHHhhCC------CeeEEEECCccCccc--
Q 010501 38 PIEDTLSFEKGFFIVIRACQLLAQK---NHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVITMDNYNDSSR-- 106 (509)
Q Consensus 38 ~i~~~lsf~~g~~~iLk~IsL~i~~---Ge~~iIIgI~GpSGSGKTTLar~L~~llp------~~g~I~~D~y~~~~r-- 106 (509)
|+...+++.++....+++++..+.. ..+|++|||+||||||||||+++|.+++. .++.+.+|+|+....
T Consensus 61 pl~rll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~~~~l 140 (321)
T 3tqc_A 61 PLSRLLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKL 140 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCHHHH
T ss_pred HHHHHHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccchhhh
Confidence 3334444545555566666555433 34689999999999999999999999872 477899999975432
Q ss_pred ---cccccCCCCCCCchhhHHHHHHhhccCc-ceeccccccCCCCcCCCeeeeecCccEEEEecceeeecc---------
Q 010501 107 ---IIDGNFDDPRLTDYDTLLENIRGLKEGK-AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK--------- 173 (509)
Q Consensus 107 ---~i~~~fq~p~~~d~~tl~e~L~~L~~g~-~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dE--------- 173 (509)
.....++.|.++|...+.+.+..++.|+ .+..|.||+..+.+.+++...+.++++||+||+++|+++
T Consensus 141 ~~~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~ 220 (321)
T 3tqc_A 141 EKQGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQ 220 (321)
T ss_dssp HHTTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCC
T ss_pred hhHHHHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchh
Confidence 1223466799999999999999999998 899999999999887666777889999999999999965
Q ss_pred --ccCCCCeEEEeecCchHHHHHHHHHHHHHcC---------------CCHHH----HHHHHHHhhhhHHHHhhcCCCCc
Q 010501 174 --LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVG---------------QEPEE----IIHQISETVYPMYKAFIEPDLQT 232 (509)
Q Consensus 174 --lr~lLDlkIfVd~d~dirLiRRI~RD~~erG---------------~t~e~----Vi~~y~~~V~P~~~~fIeP~k~~ 232 (509)
+.+++|.+|||+++.++++.|++.||...+| .+.++ +..+|.....|++++||+|++.+
T Consensus 221 ~~l~~~~D~~I~Vda~~d~~~~R~i~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~ 300 (321)
T 3tqc_A 221 VFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNR 300 (321)
T ss_dssp CCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGG
T ss_pred hhhhhhcCeEEEEECCHHHHHHHHHHhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccC
Confidence 8889999999999999999999999999875 33333 34567777789999999999999
Q ss_pred eeEEEcCCCC
Q 010501 233 AHIKIINKFN 242 (509)
Q Consensus 233 ADIII~n~~~ 242 (509)
||+|++.+.|
T Consensus 301 Adlil~~g~~ 310 (321)
T 3tqc_A 301 AQLILEKAAD 310 (321)
T ss_dssp CSEEEEECTT
T ss_pred ceEEEecCCC
Confidence 9999975544
No 2
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.88 E-value=8.4e-23 Score=193.67 Aligned_cols=173 Identities=20% Similarity=0.240 Sum_probs=143.1
Q ss_pred ecCCccEEEEEECCCCCcHHHHHHHHHhhCC----CeeEEEECCccCccc---cccc--cCCCCCCCchhhHHHHHHhhc
Q 010501 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDSSR---IIDG--NFDDPRLTDYDTLLENIRGLK 131 (509)
Q Consensus 61 ~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp----~~g~I~~D~y~~~~r---~i~~--~fq~p~~~d~~tl~e~L~~L~ 131 (509)
++|+ +|+|+||||||||||+++|++.++ ..|.|++|+++.... ..+. ....+..++...+.+.+..+.
T Consensus 20 ~~g~---~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 96 (208)
T 3c8u_A 20 PGRQ---LVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLPRKGAPETFDFEGFQRLCHALK 96 (208)
T ss_dssp CSCE---EEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBCCHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCe---EEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcCCHHHHHHhcccccCCCCchhhHHHHHHHHHHHh
Confidence 4566 999999999999999999999983 489999999975432 1111 124566777777888888888
Q ss_pred cCcceeccccccCCCCcCCCeeeeecCc-cEEEEecceeeecc-----ccCCCCeEEEeecCchHHHHHHHHHHHHHcCC
Q 010501 132 EGKAVQVPIYDFKSSSRIGYRTLEVPSS-RIVIIEGIYALSEK-----LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (509)
Q Consensus 132 ~g~~i~~P~yD~~~~~rsgg~~~~v~~a-~VLIVEGi~aL~dE-----lr~lLDlkIfVd~d~dirLiRRI~RD~~erG~ 205 (509)
.++.+..|.||+..+.+ +++.+++.++ +++|+||.|++.|| +.+.+|.+|||+++.+.++.|.+.|+ .++|+
T Consensus 97 ~~~~i~~p~~d~~~~~~-~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~-~~~g~ 174 (208)
T 3c8u_A 97 HQERVIYPLFDRARDIA-IAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRW-LDHGL 174 (208)
T ss_dssp HCSCEEEEEEETTTTEE-EEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHH-HHTTC
T ss_pred cCCceecccCCccccCC-CCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHH-HhcCC
Confidence 88889999999988764 5577888887 99999999998764 47889999999999998887777665 57899
Q ss_pred CHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEcC
Q 010501 206 EPEEIIHQISETVYPMYKAFIEPDLQTAHIKIIN 239 (509)
Q Consensus 206 t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n 239 (509)
+.+++.++|.....|++ +|++|.+..||+||+.
T Consensus 175 t~~~~~~~~~~~~~~~~-~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 175 NHDAAVARAQGNDLANA-RAIEAARLPADLTWPQ 207 (208)
T ss_dssp CHHHHHHHHHTHHHHHH-HHHHTTBCCCSEEEC-
T ss_pred CHHHHHHHHHhccHHHH-HHHHhCCCCCCEEeeC
Confidence 99999999988899987 8999999999999963
No 3
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.87 E-value=9.3e-23 Score=205.89 Aligned_cols=187 Identities=17% Similarity=0.218 Sum_probs=144.2
Q ss_pred EEeeeeceee-------------------ecCCccEEEEEECCCCCcHHHHHHHHHhhC---CCeeEEEE---CCccCcc
Q 010501 51 IVIRACQLLA-------------------QKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITM---DNYNDSS 105 (509)
Q Consensus 51 ~iLk~IsL~i-------------------~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll---p~~g~I~~---D~y~~~~ 105 (509)
++++++++.+ ..|+ +|||+||||||||||+++|++++ |..|.|.+ |+++...
T Consensus 49 ~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~---iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~~ 125 (308)
T 1sq5_A 49 PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPY---IISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPN 125 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCE---EEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCCH
T ss_pred HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCE---EEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCcH
Confidence 5778888776 5555 99999999999999999999976 45566666 9986532
Q ss_pred ---ccccccCCCCCC---CchhhHHHHHHhhccCcc-eeccccccCCCCcCCCeeeeecCccEEEEecceeeec------
Q 010501 106 ---RIIDGNFDDPRL---TDYDTLLENIRGLKEGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE------ 172 (509)
Q Consensus 106 ---r~i~~~fq~p~~---~d~~tl~e~L~~L~~g~~-i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d------ 172 (509)
+.++++ +.... ++.....+.+..+..+.. +..|.|++..+.+.......+...++||+||++++.+
T Consensus 126 ~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~ 204 (308)
T 1sq5_A 126 QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPH 204 (308)
T ss_dssp HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTT
T ss_pred HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCCceecccccccccCcccccceecCCCCEEEECchhhCCCcccccc
Confidence 224454 44443 344444444555566666 8999999999887664445566778999999999986
Q ss_pred -----cccCCCCeEEEeecCchHHHHHHHHHHHHH---------------cCCCHHH----HHHHHHHhhhhHHHHhhcC
Q 010501 173 -----KLRPLIDLRVSVTGGVHFDLVKRVFRDIQR---------------VGQEPEE----IIHQISETVYPMYKAFIEP 228 (509)
Q Consensus 173 -----Elr~lLDlkIfVd~d~dirLiRRI~RD~~e---------------rG~t~e~----Vi~~y~~~V~P~~~~fIeP 228 (509)
.+.+++|.+|||++|.++++.|++.|+... +|.+.++ +.++|...++|++.+||+|
T Consensus 205 ~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R~~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~ 284 (308)
T 1sq5_A 205 DPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILP 284 (308)
T ss_dssp SCCSSCGGGGCSEEEEEECCHHHHHHHHHHHHHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGG
T ss_pred ccchHHHHHhCCEEEEEECCHHHHHHHHHHHHHHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHccc
Confidence 678899999999999999999999998652 4888776 4566777889999999999
Q ss_pred CCCceeEEEcCCC
Q 010501 229 DLQTAHIKIINKF 241 (509)
Q Consensus 229 ~k~~ADIII~n~~ 241 (509)
.+..||+||+|+.
T Consensus 285 ~~~~AD~vI~n~~ 297 (308)
T 1sq5_A 285 TRERASLILTKSA 297 (308)
T ss_dssp GGGGCSEEEEECG
T ss_pred ccccCcEEEEeCC
Confidence 9999999997653
No 4
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.86 E-value=9.6e-22 Score=185.08 Aligned_cols=173 Identities=31% Similarity=0.513 Sum_probs=146.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc------ccccccCCCCCCCchhhHHHHHHhhccCcceeccc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI 140 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~------r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~ 140 (509)
+|||+||||||||||+++|++.+ |..+.+..|.+.... ....+.++.+..++...+.+.+..+..+..+..|.
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 87 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGLPVEMPV 87 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCCCcCCCc
Confidence 99999999999999999999988 347888888875321 11234456666777778888888877777888899
Q ss_pred cccCCCCcCCCeeeeecCccEEEEecceeeeccc-cCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 010501 141 YDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKL-RPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVY 219 (509)
Q Consensus 141 yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dEl-r~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~ 219 (509)
++++.+.+.. +.+++..++++++||.+++.||+ ..++|.+||+|++.+.++.|++.|+..++|.+...+.++|...+.
T Consensus 88 ~~~s~g~~~~-~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~~~~~ 166 (211)
T 3asz_A 88 YDFRAYTRSP-RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVK 166 (211)
T ss_dssp EETTTTEECS-SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHHHTHH
T ss_pred ccCcccCCCC-CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 9988877644 45678889999999999999764 567899999999999999999999998999999999999999999
Q ss_pred hHHHHhhcCCCCceeEEEcCCC
Q 010501 220 PMYKAFIEPDLQTAHIKIINKF 241 (509)
Q Consensus 220 P~~~~fIeP~k~~ADIII~n~~ 241 (509)
|+|..|++|.+..||+||.|+.
T Consensus 167 ~~~~~~~~~~~~~aD~ii~~~~ 188 (211)
T 3asz_A 167 PMHLHFVEPTKRYADVIVPRGG 188 (211)
T ss_dssp HHHHHTTGGGGGGCSEEEESTT
T ss_pred hhHHHhcccchhcCeEEEeCCC
Confidence 9999999999999999997654
No 5
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.85 E-value=4.6e-21 Score=186.29 Aligned_cols=190 Identities=28% Similarity=0.495 Sum_probs=135.9
Q ss_pred EeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC---------CeeEEEECCccCc--cc------cc
Q 010501 46 EKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP---------SIAVITMDNYNDS--SR------II 108 (509)
Q Consensus 46 ~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp---------~~g~I~~D~y~~~--~r------~i 108 (509)
..|...+|+++||.+++|. +|||+||||||||||+++|++.++ ..+.+..|+++.. .. .-
T Consensus 8 ~~~~~~~l~~isl~i~~g~---iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~ 84 (245)
T 2jeo_A 8 SSGVDLGTENLYFQSMRPF---LIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKG 84 (245)
T ss_dssp ---------------CCSE---EEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTT
T ss_pred cCCCceeecceeccCCCCE---EEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhcc
Confidence 3456779999999999999 999999999999999999999763 2457777766431 10 01
Q ss_pred cccCCCCCCCchhhHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeee-ccccCCCCeEEEeecC
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGG 187 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~-dElr~lLDlkIfVd~d 187 (509)
.+.|++|..++...+.+.+..+........+.|+...+.+... ...+..++++|+||.+++. .++.+++|.+|+++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v~th 163 (245)
T 2jeo_A 85 QYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTD 163 (245)
T ss_dssp CCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHHHHTTCSEEEEEECC
T ss_pred CCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHHHHHhcCeEEEEECC
Confidence 2355666667777777777777666666667777766655542 3345567899999988875 5777788999999999
Q ss_pred chHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEcCC
Q 010501 188 VHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (509)
Q Consensus 188 ~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~ 240 (509)
.+.++.|++.|++ ++|++.+++.++|..+++|.+.+|++|.+..||+||++.
T Consensus 164 ~~~~~~r~~~r~~-~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~ 215 (245)
T 2jeo_A 164 SDVRLSRRVLRDV-RRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRG 215 (245)
T ss_dssp HHHHHHHHHHHHT-C---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESS
T ss_pred HHHHHHHHHHHHH-HcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcCC
Confidence 9899999999988 789999999999999999999999999999999999654
No 6
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.84 E-value=8.4e-21 Score=193.00 Aligned_cols=179 Identities=17% Similarity=0.174 Sum_probs=143.0
Q ss_pred eecCCccEEEEEECCCCCcHHHHHHHHHhhC-C-----CeeEEEECCccCccc---cccc--cCCCCCCCchhhHHHHHH
Q 010501 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-----SIAVITMDNYNDSSR---IIDG--NFDDPRLTDYDTLLENIR 128 (509)
Q Consensus 60 i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p-----~~g~I~~D~y~~~~r---~i~~--~fq~p~~~d~~tl~e~L~ 128 (509)
+++|+ +|||+||||||||||+++|++++ | .++.|.+|++..... .+.+ .+..|..++...+.+.+.
T Consensus 87 ~~~g~---ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~ 163 (312)
T 3aez_A 87 RPVPF---IIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVT 163 (312)
T ss_dssp SCCCE---EEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHH
T ss_pred CCCCE---EEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 56666 99999999999999999999988 3 367889998865431 1121 134566777788888888
Q ss_pred hhccCcc-eeccccccCCCCcCCCeeeeecCccEEEEecceeee----ccccCCCCeEEEeecCchHHHHHHHHHHHHHc
Q 010501 129 GLKEGKA-VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS----EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV 203 (509)
Q Consensus 129 ~L~~g~~-i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~----dElr~lLDlkIfVd~d~dirLiRRI~RD~~er 203 (509)
.+..+.. ...|.|++...++.......+..+++||+||++++. ..+.+.+|.+|||+++.+.+..|++.|++..|
T Consensus 164 ~l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~r 243 (312)
T 3aez_A 164 SVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMR 243 (312)
T ss_dssp HHHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHT
T ss_pred HhCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHH
Confidence 8875554 667888888777765445556788999999999997 47889999999999999999999999987642
Q ss_pred ---------------CCCHHHHH----HHHHHhhhhHHHHhhcCCCCceeEEEcCCC
Q 010501 204 ---------------GQEPEEII----HQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (509)
Q Consensus 204 ---------------G~t~e~Vi----~~y~~~V~P~~~~fIeP~k~~ADIII~n~~ 241 (509)
|.+.+++. ++|...++|++.+||+|++..||+||+++.
T Consensus 244 d~~~r~~~~~~~~~~g~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~ 300 (312)
T 3aez_A 244 TTAFADPESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDA 300 (312)
T ss_dssp TTGGGSTTSTTGGGTTCCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECT
T ss_pred hccccCcchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCC
Confidence 67777765 668888999999999999999999997654
No 7
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.82 E-value=6.3e-20 Score=184.83 Aligned_cols=174 Identities=18% Similarity=0.313 Sum_probs=134.1
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHhhCC------CeeEE-EECCccCccc---ccc---------ccCCCCCCCchhhH
Q 010501 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMP------SIAVI-TMDNYNDSSR---IID---------GNFDDPRLTDYDTL 123 (509)
Q Consensus 63 Ge~~iIIgI~GpSGSGKTTLar~L~~llp------~~g~I-~~D~y~~~~r---~i~---------~~fq~p~~~d~~tl 123 (509)
..++.+|||+|+||||||||++.|.+.++ ....+ ++|+|+.... .+. -.+..|.++|...+
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~~~~g~p~a~d~~~l 107 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLL 107 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCSTTSBCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCChHHHHHHhccccccchhhhccCcchhHHHHH
Confidence 34577999999999999999999999883 14556 9999976532 111 11235889999999
Q ss_pred HHHHHhhccC------cceeccccccCC----CCcCCC-eeeeecCccEEEEecceeeec-c------------------
Q 010501 124 LENIRGLKEG------KAVQVPIYDFKS----SSRIGY-RTLEVPSSRIVIIEGIYALSE-K------------------ 173 (509)
Q Consensus 124 ~e~L~~L~~g------~~i~~P~yD~~~----~~rsgg-~~~~v~~a~VLIVEGi~aL~d-E------------------ 173 (509)
.+.+..+..+ ..+..|.|++.. ++|... ....+ +++|||+||.+++++ +
T Consensus 108 ~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~~~~~~~~~~~~l~~~n 186 (290)
T 1odf_A 108 QEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVN 186 (290)
T ss_dssp HHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCSCTTTCSSSCTTHHHHH
T ss_pred HHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccchhhhhcccchhhHHHHH
Confidence 9999999888 678899999987 666543 34455 889999999998664 3
Q ss_pred ---------ccCCCCeE---EEeecCchHHHHH-HHHH--HH-HHc--CCCHHHHHHHHHHhhhhHHHHhhcC-------
Q 010501 174 ---------LRPLIDLR---VSVTGGVHFDLVK-RVFR--DI-QRV--GQEPEEIIHQISETVYPMYKAFIEP------- 228 (509)
Q Consensus 174 ---------lr~lLDlk---IfVd~d~dirLiR-RI~R--D~-~er--G~t~e~Vi~~y~~~V~P~~~~fIeP------- 228 (509)
+++++|++ |||+++.+.++.| |+.| |+ .++ |++.+++ .+|.++++|+|..|++|
T Consensus 187 ~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v-~~~~~~~~p~y~~~~~~~~~~~~~ 265 (290)
T 1odf_A 187 AKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQV-HAFVDRYMPSYKLYLNDFVRSESL 265 (290)
T ss_dssp HHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHH-HHHHHTTHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHH-HHHHHHhcchHHHHhHHHHHhccC
Confidence 46667777 9999988777777 8888 53 356 8999996 78889999998877754
Q ss_pred CCCceeEEEcC
Q 010501 229 DLQTAHIKIIN 239 (509)
Q Consensus 229 ~k~~ADIII~n 239 (509)
++ .||+++.-
T Consensus 266 ~~-~adlvl~~ 275 (290)
T 1odf_A 266 GS-IATLTLGI 275 (290)
T ss_dssp SS-SEEEEEEE
T ss_pred CC-CCCEEEEE
Confidence 44 89999863
No 8
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.82 E-value=2.9e-21 Score=200.05 Aligned_cols=144 Identities=17% Similarity=0.161 Sum_probs=122.5
Q ss_pred eeEEEECCccCcccc---------ccccCCCCCCCchhhHHHHHHhhccC-----------------------------c
Q 010501 93 IAVITMDNYNDSSRI---------IDGNFDDPRLTDYDTLLENIRGLKEG-----------------------------K 134 (509)
Q Consensus 93 ~g~I~~D~y~~~~r~---------i~~~fq~p~~~d~~tl~e~L~~L~~g-----------------------------~ 134 (509)
+..|+||||+..+.. ....+++|.+||...+.+.+..|+++ .
T Consensus 156 v~vi~mDgFh~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~ 235 (359)
T 2ga8_A 156 AQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIP 235 (359)
T ss_dssp EEEEEGGGGBCCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCC
T ss_pred EEEEecCcCCCCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCc
Confidence 347899999876532 24577889999999999999988876 5
Q ss_pred ceeccccccCCCCcCCCeeeeecCccEEEEecceeeec-----cccCCCC-----eEEEeecCchHHHHHHHHHHHHHcC
Q 010501 135 AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-----KLRPLID-----LRVSVTGGVHFDLVKRVFRDIQRVG 204 (509)
Q Consensus 135 ~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d-----Elr~lLD-----lkIfVd~d~dirLiRRI~RD~~erG 204 (509)
.+..|.||+..+.+.+......+..+++|+||+++|++ ++++++| +.|||++|.++++.|.+.|++ ++|
T Consensus 236 ~v~~P~yD~~~~d~~~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~-~~G 314 (359)
T 2ga8_A 236 DIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHL-QSG 314 (359)
T ss_dssp CEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHH-HTT
T ss_pred eEeeccccCccCCCCCCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhh-ccC
Confidence 68899999999988775444444479999999999986 3677898 899999999999999999998 489
Q ss_pred C--CHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEc
Q 010501 205 Q--EPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (509)
Q Consensus 205 ~--t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~ 238 (509)
. +.+++..+|...+.|+. +||+|++..||+|+.
T Consensus 315 l~~s~eea~~r~~~~d~pN~-~~I~~~~~~ad~i~~ 349 (359)
T 2ga8_A 315 LVTTIAEGREKFRSNDLLNG-RDIDNHLIKVDNIVH 349 (359)
T ss_dssp SCSSHHHHHHHHHHCTTTSS-HHHHHTBCCCTTEEE
T ss_pred CCCCHHHHHHHHHhcCchhh-HhHhhcCCCCCEEEE
Confidence 9 99999999999999988 899999999999884
No 9
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.80 E-value=1.5e-20 Score=188.99 Aligned_cols=170 Identities=17% Similarity=0.252 Sum_probs=133.9
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhCC----CeeEEEECCccCc-ccc---------c-c-ccCCC--CCCCchhhHHHH
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDNYNDS-SRI---------I-D-GNFDD--PRLTDYDTLLEN 126 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~llp----~~g~I~~D~y~~~-~r~---------i-~-~~fq~--p~~~d~~tl~e~ 126 (509)
++.+|||+||+||||||+++.|+..++ ....|++|+|+.. ... . + .++++ |..++...+.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~~ 83 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERV 83 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHHH
Confidence 355999999999999999999998763 3678999999852 211 1 1 34444 788888888888
Q ss_pred HHhhccCcceecccccc-----CCCCcCCCee---eee-cCccEEEEecceee----eccccCCCCeEEEeecCchHHHH
Q 010501 127 IRGLKEGKAVQVPIYDF-----KSSSRIGYRT---LEV-PSSRIVIIEGIYAL----SEKLRPLIDLRVSVTGGVHFDLV 193 (509)
Q Consensus 127 L~~L~~g~~i~~P~yD~-----~~~~rsgg~~---~~v-~~a~VLIVEGi~aL----~dElr~lLDlkIfVd~d~dirLi 193 (509)
+..+..+..+..|.|++ ..+.+..+.. ..+ ...+++|+||.+++ ...+.+.+|++|||+++.++++.
T Consensus 84 l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl~ 163 (290)
T 1a7j_A 84 FREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWI 163 (290)
T ss_dssp HHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHHH
T ss_pred HHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHHH
Confidence 88888888899999965 2233322221 123 45789999999998 24688899999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeE
Q 010501 194 KRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHI 235 (509)
Q Consensus 194 RRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADI 235 (509)
||+.||..+||++.++++++|..+ .|.|.+||+|.+..||+
T Consensus 164 Rrl~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~ 204 (290)
T 1a7j_A 164 QKIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDI 204 (290)
T ss_dssp HHHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSE
T ss_pred HHhhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCE
Confidence 999999999999999999999888 99999999999999999
No 10
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.79 E-value=3.6e-19 Score=173.61 Aligned_cols=174 Identities=30% Similarity=0.533 Sum_probs=146.1
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhhCC---------CeeEEEECCccCc--c-----c-cccccCCCCCCCchhhHHHH
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNFMP---------SIAVITMDNYNDS--S-----R-IIDGNFDDPRLTDYDTLLEN 126 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~llp---------~~g~I~~D~y~~~--~-----r-~i~~~fq~p~~~d~~tl~e~ 126 (509)
.++++|+|+|++||||||+++.|+..+. .+..+++|+|+.. . . .-.++|++|..+|...+.+.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~~ 99 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKT 99 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHHH
Confidence 4578999999999999999999999773 2347899998642 1 1 12368889999999999999
Q ss_pred HHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeee-ccccCCCCeEEEeecCchHHHHHHHHHHHHHcCC
Q 010501 127 IRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ 205 (509)
Q Consensus 127 L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~-dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~ 205 (509)
|..+..+..+..|.||+..+.+.. +.......+++|+||.+++. +++.+.+|..||++++.++++.|...|+...+|.
T Consensus 100 L~~l~~~~~v~~~~~d~~~~~~~~-~~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~rg~ 178 (252)
T 1uj2_A 100 LKEITEGKTVQIPVYDFVSHSRKE-ETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGR 178 (252)
T ss_dssp HHHHHTTCCEEEEEEETTTTEEEE-EEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHcCCeeecCccccccccCCC-ceeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhhhCC
Confidence 999988888999999998886652 33445567899999998874 5777778999999999999999988898888899
Q ss_pred CHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEc
Q 010501 206 EPEEIIHQISETVYPMYKAFIEPDLQTAHIKII 238 (509)
Q Consensus 206 t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~ 238 (509)
+.+++.++|...+.+.|..+++|.+..||++|+
T Consensus 179 ~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~ 211 (252)
T 1uj2_A 179 DLEQILSQYITFVKPAFEEFCLPTKKYADVIIP 211 (252)
T ss_dssp CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEE
T ss_pred CHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEe
Confidence 999999999999999999999999999999994
No 11
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.77 E-value=3.2e-19 Score=185.05 Aligned_cols=138 Identities=16% Similarity=0.077 Sum_probs=118.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccC---------cccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND---------SSRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~---------~~r~i~ 109 (509)
.+++++.++...+|++|||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|... ..+.++
T Consensus 7 i~~ls~~y~~~~~L~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 7 IGHLSKSFQNTPVLNDISLSLDPGE---ILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTC---EEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEeEEEEECCEEEEEeeEEEEcCCC---EEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 4788999999999999999999999 99999999999999999999999 8999999999743 124689
Q ss_pred ccCCCCCCCchhhHHHHHHhhccCcc----------------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeec
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEGKA----------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE 172 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g~~----------------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d 172 (509)
++||++.+++.+++.+|+.+...... +.. ...+...++.|+|++|++..+++|+.++.++|+|
T Consensus 84 ~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLD 163 (359)
T 3fvq_A 84 YLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLD 163 (359)
T ss_dssp EECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999999999999999987432110 111 2345666789999999999999999999999999
Q ss_pred cccCCCCe
Q 010501 173 KLRPLIDL 180 (509)
Q Consensus 173 Elr~lLDl 180 (509)
||.+.||.
T Consensus 164 EPts~LD~ 171 (359)
T 3fvq_A 164 EPFSALDE 171 (359)
T ss_dssp STTTTSCH
T ss_pred CCcccCCH
Confidence 99999997
No 12
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.76 E-value=2.4e-20 Score=193.02 Aligned_cols=158 Identities=20% Similarity=0.210 Sum_probs=126.0
Q ss_pred eeeeEEEeCcEE--EeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccC----------ccc
Q 010501 40 EDTLSFEKGFFI--VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND----------SSR 106 (509)
Q Consensus 40 ~~~lsf~~g~~~--iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~----------~~r 106 (509)
.+++++.++... +|+++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|... ..+
T Consensus 6 i~~l~~~y~~~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 6 VKNVSKVFKKGKVVALDNVNINIENGE---RFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp EEEEEEEEGGGTEEEEEEEEEEECTTC---EEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEeEEEEECCEeeeeEeceEEEECCCC---EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 467888887777 9999999999999 99999999999999999999999 7999999998632 124
Q ss_pred cccccCCCCCCCchhhHHHHHHhhccCc--c--------------eec-cccccCCCCcCCCeeeeecCccEEEEeccee
Q 010501 107 IIDGNFDDPRLTDYDTLLENIRGLKEGK--A--------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (509)
Q Consensus 107 ~i~~~fq~p~~~d~~tl~e~L~~L~~g~--~--------------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~a 169 (509)
.++++||++..++.+++.+++....... . +.. ...+...++.|+|+++++..+++++.++.++
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lL 162 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLL 162 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence 6899999999999999999998743210 0 111 2235556789999999999999999999999
Q ss_pred eeccccCCCCeEEEeecCchHHHHHHHHHHHH-HcCCCH
Q 010501 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ-RVGQEP 207 (509)
Q Consensus 170 L~dElr~lLDlkIfVd~d~dirLiRRI~RD~~-erG~t~ 207 (509)
|+|||.+.||.. ....++.+.+++. +.|.+.
T Consensus 163 LLDEP~s~LD~~-------~r~~l~~~l~~l~~~~g~tv 194 (353)
T 1oxx_K 163 LLDEPFSNLDAR-------MRDSARALVKEVQSRLGVTL 194 (353)
T ss_dssp EEESTTTTSCGG-------GHHHHHHHHHHHHHHHCCEE
T ss_pred EEECCcccCCHH-------HHHHHHHHHHHHHHhcCCEE
Confidence 999999999983 4455555555554 346553
No 13
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.76 E-value=4.5e-19 Score=185.30 Aligned_cols=159 Identities=17% Similarity=0.160 Sum_probs=129.0
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq 113 (509)
.+++++.++...+|++|||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|.... .+.++++||
T Consensus 6 ~~~l~~~yg~~~~L~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 6 LQNVTKAWGEVVVSKDINLDIHEGE---FVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEeEEEEECCEEEEeeeEEEECCCC---EEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 4678999999999999999999999 99999999999999999999999 89999999997432 356899999
Q ss_pred CCCCCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 114 DPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
++.+++.+++.+|+.+... +. .+.. ...+...++.|+|++|++..+++|+.++.++|.|||..
T Consensus 83 ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts 162 (381)
T 3rlf_A 83 SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLS 162 (381)
T ss_dssp TCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTT
T ss_pred CCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCc
Confidence 9999999999999976321 10 0111 23456677899999999999999999999999999999
Q ss_pred CCCeEEEeecCchHHHHHHHHHHHH-HcCCCHH
Q 010501 177 LIDLRVSVTGGVHFDLVKRVFRDIQ-RVGQEPE 208 (509)
Q Consensus 177 lLDlkIfVd~d~dirLiRRI~RD~~-erG~t~e 208 (509)
.||.. ....++.+.+++. +.|.+..
T Consensus 163 ~LD~~-------~~~~l~~~l~~l~~~~g~tii 188 (381)
T 3rlf_A 163 NLDAA-------LRVQMRIEISRLHKRLGRTMI 188 (381)
T ss_dssp TSCHH-------HHHHHHHHHHHHHHHHCCEEE
T ss_pred CCCHH-------HHHHHHHHHHHHHHhCCCEEE
Confidence 99983 3445555555554 3366543
No 14
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.76 E-value=4.2e-19 Score=171.92 Aligned_cols=157 Identities=18% Similarity=0.169 Sum_probs=123.9
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc-----------cc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-----------RI 107 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~-----------r~ 107 (509)
.+++++.++...+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.++|..... +.
T Consensus 7 ~~~l~~~y~~~~~l~~vsl~i~~Ge---~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 83 (224)
T 2pcj_A 7 AENIKKVIRGYEILKGISLSVKKGE---FVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRK 83 (224)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTC---EEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHH
T ss_pred EEeEEEEECCEeeEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCc
Confidence 4678888888899999999999999 99999999999999999999998 789999999874321 34
Q ss_pred ccccCCCCCCCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 108 IDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 108 i~~~fq~p~~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
++++||++..++..++.+++..... +. .+.. +..+...++.|+|+.+++..+++++.++.+++
T Consensus 84 i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lll 163 (224)
T 2pcj_A 84 LGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLF 163 (224)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEE
T ss_pred EEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 7899999988888899999865321 10 0111 12344456789999999999999999999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
+|||...+|. .....+..+.+++.+.|.+
T Consensus 164 LDEPt~~LD~-------~~~~~~~~~l~~l~~~g~t 192 (224)
T 2pcj_A 164 ADEPTGNLDS-------ANTKRVMDIFLKINEGGTS 192 (224)
T ss_dssp EESTTTTCCH-------HHHHHHHHHHHHHHHTTCE
T ss_pred EeCCCCCCCH-------HHHHHHHHHHHHHHHCCCE
Confidence 9999999998 3444555555555444544
No 15
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.76 E-value=2.9e-20 Score=192.61 Aligned_cols=158 Identities=16% Similarity=0.138 Sum_probs=125.6
Q ss_pred eeeeEEEe-CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccC
Q 010501 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNF 112 (509)
Q Consensus 40 ~~~lsf~~-g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~f 112 (509)
.+++++.+ +...+|+++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|.... .+.++++|
T Consensus 17 ~~~l~~~y~g~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~ 93 (355)
T 1z47_A 17 FVGVEKIYPGGARSVRGVSFQIREGE---MVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVGLVF 93 (355)
T ss_dssp EEEEEECCTTSTTCEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEEEEC
T ss_pred EEEEEEEEcCCCEEEeeeEEEECCCC---EEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEEEEe
Confidence 46788888 77789999999999999 99999999999999999999999 79999999997432 35689999
Q ss_pred CCCCCCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeecccc
Q 010501 113 DDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (509)
Q Consensus 113 q~p~~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr 175 (509)
|++..++.+++.+++..... +. .+.. ...+...++.|+|++|++..+++++.++.++|+|||.
T Consensus 94 Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~ 173 (355)
T 1z47_A 94 QNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPF 173 (355)
T ss_dssp GGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred cCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 99999999999999876321 10 0111 2235556789999999999999999999999999999
Q ss_pred CCCCeEEEeecCchHHHHHHHHHHHHH-cCCCH
Q 010501 176 PLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (509)
Q Consensus 176 ~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~ 207 (509)
+.||.. ....++.+.+++.+ .|.+.
T Consensus 174 s~LD~~-------~r~~l~~~l~~l~~~~g~tv 199 (355)
T 1z47_A 174 AAIDTQ-------IRRELRTFVRQVHDEMGVTS 199 (355)
T ss_dssp CCSSHH-------HHHHHHHHHHHHHHHHTCEE
T ss_pred ccCCHH-------HHHHHHHHHHHHHHhcCCEE
Confidence 999983 34445555555543 35543
No 16
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.75 E-value=6.6e-19 Score=171.86 Aligned_cols=159 Identities=16% Similarity=0.192 Sum_probs=123.8
Q ss_pred eeeeEEEeC----cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------
Q 010501 40 EDTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (509)
Q Consensus 40 ~~~lsf~~g----~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---------- 104 (509)
.+++++.++ ...+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.++|....
T Consensus 4 ~~~l~~~y~~~~~~~~~L~~isl~i~~Ge---~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 4 LKNVTKTYKMGEEIIYALKNVNLNIKEGE---FVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred EEEEEEEeCCCCcceeeEEeeeEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 356777765 2579999999999999 99999999999999999999999 89999999997432
Q ss_pred -cccccccCCCCCCCchhhHHHHHHhhcc-----Cc--------------ceecc-cc-ccCCCCcCCCeeeeecCccEE
Q 010501 105 -SRIIDGNFDDPRLTDYDTLLENIRGLKE-----GK--------------AVQVP-IY-DFKSSSRIGYRTLEVPSSRIV 162 (509)
Q Consensus 105 -~r~i~~~fq~p~~~d~~tl~e~L~~L~~-----g~--------------~i~~P-~y-D~~~~~rsgg~~~~v~~a~VL 162 (509)
.+.++++||+|..++..++.+++..... +. .+... .+ +...++.|+|+.+++..++++
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral 160 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARAL 160 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 1248999999999999999999865210 00 01111 12 555678899999999999999
Q ss_pred EEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCHH
Q 010501 163 IIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPE 208 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e 208 (509)
+.++.+++.|||+..+|. .....+..+.+++.+ .|.++.
T Consensus 161 ~~~p~llllDEPts~LD~-------~~~~~i~~~l~~l~~~~g~tvi 200 (235)
T 3tif_A 161 ANNPPIILADQPTWALDS-------KTGEKIMQLLKKLNEEDGKTVV 200 (235)
T ss_dssp TTCCSEEEEESTTTTSCH-------HHHHHHHHHHHHHHHHHCCEEE
T ss_pred HcCCCEEEEeCCcccCCH-------HHHHHHHHHHHHHHHHcCCEEE
Confidence 999999999999999998 345555566666543 365543
No 17
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.75 E-value=9.4e-19 Score=173.51 Aligned_cols=159 Identities=20% Similarity=0.186 Sum_probs=128.9
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------------
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------- 104 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------------- 104 (509)
.+++++.++...+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.++|....
T Consensus 9 i~~l~~~y~~~~vl~~vsl~i~~Ge---~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 85 (262)
T 1b0u_A 9 VIDLHKRYGGHEVLKGVSLQARAGD---VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 85 (262)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred EeeEEEEECCEEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccCh
Confidence 4678888888899999999999999 99999999999999999999999 78999999986432
Q ss_pred ------cccccccCCCCCCCchhhHHHHHHhhc---cCc--------------ceecc-c-cccCCCCcCCCeeeeecCc
Q 010501 105 ------SRIIDGNFDDPRLTDYDTLLENIRGLK---EGK--------------AVQVP-I-YDFKSSSRIGYRTLEVPSS 159 (509)
Q Consensus 105 ------~r~i~~~fq~p~~~d~~tl~e~L~~L~---~g~--------------~i~~P-~-yD~~~~~rsgg~~~~v~~a 159 (509)
++.++++||++..++..++.+++.... .+. .+... . .+...++.|+|+.+++..+
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lA 165 (262)
T 1b0u_A 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIA 165 (262)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHH
T ss_pred hhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHH
Confidence 134789999998888889999987621 110 01111 2 3555678899999999999
Q ss_pred cEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHH
Q 010501 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (509)
Q Consensus 160 ~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e 208 (509)
++++.++.++++|||+..+|. .....+..+.+++.+.|.++.
T Consensus 166 raL~~~p~lllLDEPts~LD~-------~~~~~~~~~l~~l~~~g~tvi 207 (262)
T 1b0u_A 166 RALAMEPDVLLFDEPTSALDP-------ELVGEVLRIMQQLAEEGKTMV 207 (262)
T ss_dssp HHHHTCCSEEEEESTTTTSCH-------HHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHhcCCCEEEEeCCCccCCH-------HHHHHHHHHHHHHHhCCCEEE
Confidence 999999999999999999998 455666677777766676643
No 18
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.75 E-value=2e-18 Score=168.86 Aligned_cols=159 Identities=14% Similarity=0.114 Sum_probs=127.7
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------cccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~~ 110 (509)
.+++++.++...+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.++|.... .+.+++
T Consensus 9 ~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 85 (240)
T 1ji0_A 9 VQSLHVYYGAIHAIKGIDLKVPRGQ---IVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIAL 85 (240)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEE
T ss_pred EEeEEEEECCeeEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEE
Confidence 4678898888889999999999999 99999999999999999999998 78999999997432 124889
Q ss_pred cCCCCCCCchhhHHHHHHhhc-cC---cc-----------e-ec-cccccCCCCcCCCeeeeecCccEEEEecceeeecc
Q 010501 111 NFDDPRLTDYDTLLENIRGLK-EG---KA-----------V-QV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEK 173 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~-~g---~~-----------i-~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dE 173 (509)
++|++..++..++.+++.... .. .. + .. ...+...+..|+|+.+++..+++++.++.++++||
T Consensus 86 v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDE 165 (240)
T 1ji0_A 86 VPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDE 165 (240)
T ss_dssp ECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred EecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 999998888889999997642 11 00 0 01 12244456789999999999999999999999999
Q ss_pred ccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHH
Q 010501 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (509)
Q Consensus 174 lr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e 208 (509)
|+..+|. .....+..+.+++.+.|.++.
T Consensus 166 Pts~LD~-------~~~~~l~~~l~~~~~~g~tvi 193 (240)
T 1ji0_A 166 PSLGLAP-------ILVSEVFEVIQKINQEGTTIL 193 (240)
T ss_dssp TTTTCCH-------HHHHHHHHHHHHHHHTTCCEE
T ss_pred CcccCCH-------HHHHHHHHHHHHHHHCCCEEE
Confidence 9999998 455566666666665666543
No 19
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.74 E-value=1.1e-18 Score=173.61 Aligned_cols=158 Identities=20% Similarity=0.161 Sum_probs=127.0
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---------ccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---------~r~i~ 109 (509)
.+++++.++...+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.++|.... ++.++
T Consensus 27 i~~l~~~y~~~~vL~~vsl~i~~Ge---i~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~ 103 (263)
T 2olj_A 27 VHQLKKSFGSLEVLKGINVHIREGE---VVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG 103 (263)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEE
T ss_pred EEeEEEEECCEEEEEeeEEEEcCCC---EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEE
Confidence 5788999988899999999999999 99999999999999999999999 78999999997532 13478
Q ss_pred ccCCCCCCCchhhHHHHHHhhc---cCc-------c-------eec-cccccCCCCcCCCeeeeecCccEEEEecceeee
Q 010501 110 GNFDDPRLTDYDTLLENIRGLK---EGK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS 171 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~---~g~-------~-------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~ 171 (509)
++||++..++..++.+++.... .+. . +.. ...+....+.|+|+.+++..+++++.++.++++
T Consensus 104 ~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllL 183 (263)
T 2olj_A 104 MVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLF 183 (263)
T ss_dssp EECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEE
Confidence 9999998888889999987621 110 0 111 123445567899999999999999999999999
Q ss_pred ccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 172 EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 172 dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
|||+..+|. .....+..+.+++.+.|.++
T Consensus 184 DEPts~LD~-------~~~~~~~~~l~~l~~~g~tv 212 (263)
T 2olj_A 184 DEPTSALDP-------EMVGEVLSVMKQLANEGMTM 212 (263)
T ss_dssp ESTTTTSCH-------HHHHHHHHHHHHHHHTTCEE
T ss_pred eCCcccCCH-------HHHHHHHHHHHHHHhCCCEE
Confidence 999999998 34556666666665556553
No 20
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.74 E-value=3e-19 Score=184.52 Aligned_cols=157 Identities=17% Similarity=0.197 Sum_probs=124.9
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq 113 (509)
.+++++.++.. +|+++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|.... .+.++++||
T Consensus 4 ~~~l~~~y~~~-~l~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 4 IESLSRKWKNF-SLDNLSLKVESGE---YFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp EEEEEEECSSC-EEEEEEEEECTTC---EEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred EEEEEEEECCE-EEeeeEEEEcCCC---EEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence 46788888877 9999999999999 99999999999999999999999 79999999997532 246899999
Q ss_pred CCCCCchhhHHHHHHhhcc--C--c--c-------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCC
Q 010501 114 DPRLTDYDTLLENIRGLKE--G--K--A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID 179 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~--g--~--~-------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLD 179 (509)
++..++.+++.+|+..... + . . +.. ...+...++.|+|+++++..+++++.++.++|+|||.+.||
T Consensus 80 ~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD 159 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159 (348)
T ss_dssp TCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSC
T ss_pred CcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCC
Confidence 9999999999999876321 1 0 0 111 22355567889999999999999999999999999999999
Q ss_pred eEEEeecCchHHHHHHHHHHHHH-cCCCH
Q 010501 180 LRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (509)
Q Consensus 180 lkIfVd~d~dirLiRRI~RD~~e-rG~t~ 207 (509)
.. ....++.+.+++.+ .|.+.
T Consensus 160 ~~-------~~~~l~~~l~~l~~~~g~ti 181 (348)
T 3d31_A 160 PR-------TQENAREMLSVLHKKNKLTV 181 (348)
T ss_dssp HH-------HHHHHHHHHHHHHHHTTCEE
T ss_pred HH-------HHHHHHHHHHHHHHhcCCEE
Confidence 83 34445555555543 35543
No 21
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.74 E-value=1.5e-18 Score=180.53 Aligned_cols=159 Identities=19% Similarity=0.186 Sum_probs=128.0
Q ss_pred eeeeEEEeC----cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----------
Q 010501 40 EDTLSFEKG----FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------- 104 (509)
Q Consensus 40 ~~~lsf~~g----~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---------- 104 (509)
.+++++.|+ ...+|++|||.+++|+ ++||+||||||||||+++|++++ |+.|.|.++|....
T Consensus 27 v~~ls~~y~~~~~~~~aL~~vsl~i~~Ge---i~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~ 103 (366)
T 3tui_C 27 LSNITKVFHQGTRTIQALNNVSLHVPAGQ---IYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 103 (366)
T ss_dssp EEEEEEEEECSSSEEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHH
T ss_pred EEeEEEEeCCCCCCeEEEEeeEEEEcCCC---EEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 356777664 3579999999999999 99999999999999999999999 89999999997532
Q ss_pred cccccccCCCCCCCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecc
Q 010501 105 SRIIDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 105 ~r~i~~~fq~p~~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi 167 (509)
++.++++||++.+++..++.+++..... +. .+.. ...+...++.|+|++|++..+++|+.++.
T Consensus 104 r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~ 183 (366)
T 3tui_C 104 RRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPK 183 (366)
T ss_dssp HTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCS
T ss_pred hCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 2458999999999999999999876321 10 0111 23456677899999999999999999999
Q ss_pred eeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCHH
Q 010501 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEPE 208 (509)
Q Consensus 168 ~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~e 208 (509)
++|+|||+..||. ...+.+..+.+++.+ .|.++.
T Consensus 184 lLLlDEPTs~LD~-------~~~~~i~~lL~~l~~~~g~Tii 218 (366)
T 3tui_C 184 VLLCDQATSALDP-------ATTRSILELLKDINRRLGLTIL 218 (366)
T ss_dssp EEEEESTTTTSCH-------HHHHHHHHHHHHHHHHSCCEEE
T ss_pred EEEEECCCccCCH-------HHHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999998 455666777777754 476643
No 22
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.74 E-value=2.1e-18 Score=178.94 Aligned_cols=158 Identities=18% Similarity=0.192 Sum_probs=126.5
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq 113 (509)
.+++++.++.+.+|+++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|.... .+.++++||
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 6 VVNLKKYFGKVKAVDGVSFEVKDGE---FVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEECCEEEEeeeEEEEcCCC---EEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 4678888888899999999999999 99999999999999999999999 79999999997432 356899999
Q ss_pred CCCCCchhhHHHHHHhhccCc---------c-------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 114 DPRLTDYDTLLENIRGLKEGK---------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~g~---------~-------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
++..++.+++.+++....... . +.. ...+...++.|+|+++++..+++++.++.++|+|||.+
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s 162 (359)
T 2yyz_A 83 NYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLS 162 (359)
T ss_dssp SCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcc
Confidence 999999999999998743210 0 111 22355567889999999999999999999999999999
Q ss_pred CCCeEEEeecCchHHHHHHHHHHHHH-cCCCH
Q 010501 177 LIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (509)
Q Consensus 177 lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~ 207 (509)
.||.. ....++.+.+++.+ .|.+.
T Consensus 163 ~LD~~-------~r~~l~~~l~~l~~~~g~tv 187 (359)
T 2yyz_A 163 NLDAN-------LRMIMRAEIKHLQQELGITS 187 (359)
T ss_dssp TSCHH-------HHHHHHHHHHHHHHHHCCEE
T ss_pred cCCHH-------HHHHHHHHHHHHHHhcCCEE
Confidence 99983 34445555555433 35543
No 23
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.74 E-value=2.3e-18 Score=169.95 Aligned_cols=138 Identities=17% Similarity=0.211 Sum_probs=114.6
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc--------cccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS--------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~--------~r~i~~ 110 (509)
.+++++.++...+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.++|.... .+.+++
T Consensus 10 i~~l~~~y~~~~vl~~vsl~i~~Ge---~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 86 (257)
T 1g6h_A 10 TENIVKYFGEFKALDGVSISVNKGD---VTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR 86 (257)
T ss_dssp EEEEEEEETTEEEEEEECCEEETTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEE
T ss_pred EeeeEEEECCEeeEeeeEEEEeCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEE
Confidence 4678888988899999999999999 99999999999999999999999 78999999997432 124789
Q ss_pred cCCCCCCCchhhHHHHHHhhcc----C-----------cc--------------eec-cccccCCCCcCCCeeeeecCcc
Q 010501 111 NFDDPRLTDYDTLLENIRGLKE----G-----------KA--------------VQV-PIYDFKSSSRIGYRTLEVPSSR 160 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~----g-----------~~--------------i~~-P~yD~~~~~rsgg~~~~v~~a~ 160 (509)
++|++..++..++.+++..... + .. +.. ...+...++.|+|+.+++..++
T Consensus 87 v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAr 166 (257)
T 1g6h_A 87 TFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGR 166 (257)
T ss_dssp CCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred EccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHH
Confidence 9999988888899999876321 1 00 000 1223445678999999999999
Q ss_pred EEEEecceeeeccccCCCCe
Q 010501 161 IVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 161 VLIVEGi~aL~dElr~lLDl 180 (509)
+++.++.++++|||+..+|.
T Consensus 167 aL~~~p~lllLDEPts~LD~ 186 (257)
T 1g6h_A 167 ALMTNPKMIVMDEPIAGVAP 186 (257)
T ss_dssp HHHTCCSEEEEESTTTTCCH
T ss_pred HHHcCCCEEEEeCCccCCCH
Confidence 99999999999999999998
No 24
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.74 E-value=2.8e-18 Score=178.74 Aligned_cols=158 Identities=18% Similarity=0.203 Sum_probs=121.1
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq 113 (509)
.+++++.++.+.+|+++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|.... .+.++++||
T Consensus 14 ~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 14 LENLTKRFGNFTAVNKLNLTIKDGE---FLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred EEEEEEEECCEEEEeeeEEEECCCC---EEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 4678888888899999999999999 99999999999999999999999 79999999997432 356899999
Q ss_pred CCCCCchhhHHHHHHhhccCc----------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 114 DPRLTDYDTLLENIRGLKEGK----------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~g~----------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
++..++.+++.+++.+..... .+.. ...+...++.|+|+++++..+++|+.++.++|+|||.+
T Consensus 91 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 170 (372)
T 1v43_A 91 SYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLS 170 (372)
T ss_dssp ------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTT
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 999999999999998732210 0111 22355667899999999999999999999999999999
Q ss_pred CCCeEEEeecCchHHHHHHHHHHHHH-cCCCH
Q 010501 177 LIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (509)
Q Consensus 177 lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~ 207 (509)
.||.. ....++.+.+++.+ .|.+.
T Consensus 171 ~LD~~-------~r~~l~~~l~~l~~~~g~tv 195 (372)
T 1v43_A 171 NLDAK-------LRVAMRAEIKKLQQKLKVTT 195 (372)
T ss_dssp TSCHH-------HHHHHHHHHHHHHHHHTCEE
T ss_pred cCCHH-------HHHHHHHHHHHHHHhCCCEE
Confidence 99983 34445555555543 35543
No 25
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.73 E-value=1.7e-18 Score=171.48 Aligned_cols=158 Identities=15% Similarity=0.182 Sum_probs=126.2
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc------cccccccC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS------SRIIDGNF 112 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~------~r~i~~~f 112 (509)
.+++++.++...+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.++|.... ++.+++++
T Consensus 18 i~~l~~~y~~~~vl~~vsl~i~~Ge---i~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v~ 94 (256)
T 1vpl_A 18 VKDLRKRIGKKEILKGISFEIEEGE---IFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP 94 (256)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred EEEEEEEECCEEEEEeeEEEEcCCc---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEEc
Confidence 4788999988899999999999999 99999999999999999999998 78999999997532 23578999
Q ss_pred CCCCCCchhhHHHHHHhhcc--Cc-------c-------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeecccc
Q 010501 113 DDPRLTDYDTLLENIRGLKE--GK-------A-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (509)
Q Consensus 113 q~p~~~d~~tl~e~L~~L~~--g~-------~-------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr 175 (509)
|++..++..++.+++..... +. . +.. ...+......|+|+.+++..+++++.++.++++|||.
T Consensus 95 q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPt 174 (256)
T 1vpl_A 95 EEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPT 174 (256)
T ss_dssp TTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTT
T ss_pred CCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence 99988888899999865321 10 0 111 1234455678999999999999999999999999999
Q ss_pred CCCCeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 176 ~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
..+|. .....+..+.+++.+.|.++
T Consensus 175 s~LD~-------~~~~~l~~~l~~l~~~g~ti 199 (256)
T 1vpl_A 175 SGLDV-------LNAREVRKILKQASQEGLTI 199 (256)
T ss_dssp TTCCH-------HHHHHHHHHHHHHHHTTCEE
T ss_pred cccCH-------HHHHHHHHHHHHHHhCCCEE
Confidence 99998 34555556666655555543
No 26
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.73 E-value=2.3e-18 Score=179.29 Aligned_cols=158 Identities=18% Similarity=0.152 Sum_probs=125.8
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccC-----------cccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----------SSRI 107 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~-----------~~r~ 107 (509)
.+++++.++...+|+++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|... ..+.
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 6 LVDVWKVFGEVTAVREMSLEVKDGE---FMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEeEEEEECCEEEEeeeEEEEcCCC---EEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 4678888888899999999999999 99999999999999999999999 7999999998632 1246
Q ss_pred ccccCCCCCCCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 108 IDGNFDDPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 108 i~~~fq~p~~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
++++||++..++.+++.+++..... +. .+.. ...+...++.|+|+++++..+++++.++.++|
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLL 162 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFL 162 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEE
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8999999999999999999976321 10 0111 22355567899999999999999999999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHHH-cCCCH
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~ 207 (509)
+|||.+.||.. ....++.+.+++.+ .|.+.
T Consensus 163 LDEP~s~LD~~-------~r~~l~~~l~~l~~~~g~tv 193 (372)
T 1g29_1 163 MDEPLSNLDAK-------LRVRMRAELKKLQRQLGVTT 193 (372)
T ss_dssp EECTTTTSCHH-------HHHHHHHHHHHHHHHHTCEE
T ss_pred ECCCCccCCHH-------HHHHHHHHHHHHHHhcCCEE
Confidence 99999999983 34445555555543 35543
No 27
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.73 E-value=1.2e-18 Score=174.46 Aligned_cols=152 Identities=13% Similarity=0.165 Sum_probs=118.9
Q ss_pred eeeeEEEeCc-EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---------cccc
Q 010501 40 EDTLSFEKGF-FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRII 108 (509)
Q Consensus 40 ~~~lsf~~g~-~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---------~r~i 108 (509)
.+++++.|+. ..+|++|||.+++|+ ++||+||||||||||+++|++++ |..|.|.++|.... ++.+
T Consensus 10 i~~ls~~y~~~~~~L~~isl~i~~Ge---~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~i 86 (275)
T 3gfo_A 10 VEELNYNYSDGTHALKGINMNIKRGE---VTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESI 86 (275)
T ss_dssp EEEEEEECTTSCEEEEEEEEEEETTS---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSE
T ss_pred EEEEEEEECCCCeEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcE
Confidence 4678888864 569999999999999 99999999999999999999998 79999999997541 2358
Q ss_pred cccCCCCC-CCchhhHHHHHHhhccCcc----------------eec-cccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 109 DGNFDDPR-LTDYDTLLENIRGLKEGKA----------------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 109 ~~~fq~p~-~~d~~tl~e~L~~L~~g~~----------------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
+++||+|. .+...++.+++........ +.. ...+...++.|+|+.+++..+++++.++.+++
T Consensus 87 g~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLl 166 (275)
T 3gfo_A 87 GIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLI 166 (275)
T ss_dssp EEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999984 3446789998875321100 111 23355567889999999999999999999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHH
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQ 201 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~ 201 (509)
+|||+..+|. .....+..+.+++.
T Consensus 167 LDEPts~LD~-------~~~~~i~~~l~~l~ 190 (275)
T 3gfo_A 167 LDEPTAGLDP-------MGVSEIMKLLVEMQ 190 (275)
T ss_dssp EECTTTTCCH-------HHHHHHHHHHHHHH
T ss_pred EECccccCCH-------HHHHHHHHHHHHHH
Confidence 9999999998 34444555555543
No 28
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.73 E-value=2.8e-18 Score=170.66 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=123.9
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc-------cccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RIIDGN 111 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~-------r~i~~~ 111 (509)
.+++++.++...+|++|||.+++|+ ++||+||||||||||+++|++++ |..|.|.++|..... +.++++
T Consensus 14 ~~~l~~~~~~~~vL~~vsl~i~~Ge---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v 90 (266)
T 4g1u_C 14 ASHLHYHVQQQALINDVSLHIASGE---MVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVM 90 (266)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTC---EEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEE
T ss_pred EEeEEEEeCCeeEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEE
Confidence 4678888999999999999999999 99999999999999999999999 789999999975431 347899
Q ss_pred CCCCCCCchhhHHHHHHhhccCc---c-----------eec-cccccCCCCcCCCeeeeecCccEEEE------ecceee
Q 010501 112 FDDPRLTDYDTLLENIRGLKEGK---A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVII------EGIYAL 170 (509)
Q Consensus 112 fq~p~~~d~~tl~e~L~~L~~g~---~-----------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIV------EGi~aL 170 (509)
+|++..+...++.+++....... . +.. ...+...++.|+|+.+++..+++++. ++.+++
T Consensus 91 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLl 170 (266)
T 4g1u_C 91 RQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLF 170 (266)
T ss_dssp CSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEE
T ss_pred ecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEE
Confidence 99998877889999987643210 0 011 12344456789999999999999998 999999
Q ss_pred eccccCCCCeEEEeecCchHHHHHHHHHHHHHc
Q 010501 171 SEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV 203 (509)
Q Consensus 171 ~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er 203 (509)
+|||+..+|. .....+..+.+++.+.
T Consensus 171 lDEPts~LD~-------~~~~~i~~~l~~l~~~ 196 (266)
T 4g1u_C 171 LDEPTSALDL-------YHQQHTLRLLRQLTRQ 196 (266)
T ss_dssp ECCCCSSCCH-------HHHHHHHHHHHHHHHH
T ss_pred EeCccccCCH-------HHHHHHHHHHHHHHHc
Confidence 9999999998 3455556666666544
No 29
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.72 E-value=2.9e-18 Score=178.07 Aligned_cols=158 Identities=18% Similarity=0.201 Sum_probs=125.6
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq 113 (509)
.+++++.++...+|+++||.+++|+ +++|+||||||||||+++|++++ |+.|.|.++|.... .+.++++||
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 6 LENIVKKFGNFTALNNINLKIKDGE---FMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp EEEEEEESSSSEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEeEEEEECCEEEEEeeEEEECCCC---EEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 4678888888889999999999999 99999999999999999999999 79999999987432 356899999
Q ss_pred CCCCCchhhHHHHHHhhcc--Cc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 114 DPRLTDYDTLLENIRGLKE--GK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~--g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
++..++.+++.+|+..... +. .+.. ...+...++.|+|++|++..+++++.++.++|+|||.+
T Consensus 83 ~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 162 (362)
T 2it1_A 83 NWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLS 162 (362)
T ss_dssp TCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGG
T ss_pred CcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccc
Confidence 9999999999999976321 10 0111 22355567889999999999999999999999999999
Q ss_pred CCCeEEEeecCchHHHHHHHHHHHHH-cCCCH
Q 010501 177 LIDLRVSVTGGVHFDLVKRVFRDIQR-VGQEP 207 (509)
Q Consensus 177 lLDlkIfVd~d~dirLiRRI~RD~~e-rG~t~ 207 (509)
.||.. ....++.+.+++.+ .|.+.
T Consensus 163 ~LD~~-------~r~~l~~~l~~l~~~~g~tv 187 (362)
T 2it1_A 163 NLDAL-------LRLEVRAELKRLQKELGITT 187 (362)
T ss_dssp GSCHH-------HHHHHHHHHHHHHHHHTCEE
T ss_pred cCCHH-------HHHHHHHHHHHHHHhCCCEE
Confidence 99983 34445555555533 35543
No 30
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.72 E-value=3e-18 Score=165.58 Aligned_cols=137 Identities=15% Similarity=0.119 Sum_probs=113.1
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccC--ccccccccCCCCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND--SSRIIDGNFDDPR 116 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~--~~r~i~~~fq~p~ 116 (509)
.+++++.++. .+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.+++... ..+.+++++|++.
T Consensus 13 ~~~ls~~y~~-~il~~vsl~i~~Ge---~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~~ 88 (214)
T 1sgw_A 13 IRDLSVGYDK-PVLERITMTIEKGN---VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEII 88 (214)
T ss_dssp EEEEEEESSS-EEEEEEEEEEETTC---CEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCC
T ss_pred EEEEEEEeCC-eEEeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCCc
Confidence 4678888888 89999999999999 99999999999999999999998 7899999998643 2346889999998
Q ss_pred CCchhhHHHHHHhhcc--C--cc----------eeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 117 LTDYDTLLENIRGLKE--G--KA----------VQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 117 ~~d~~tl~e~L~~L~~--g--~~----------i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
.++..++.+++..... + .. .....++......|+|+.+++..+++++.++.+++.|||...+|.
T Consensus 89 ~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~ 166 (214)
T 1sgw_A 89 VPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDE 166 (214)
T ss_dssp CCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCT
T ss_pred CCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCH
Confidence 8888899999865321 1 00 111111344557899999999999999999999999999999997
No 31
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.71 E-value=3.5e-18 Score=161.27 Aligned_cols=166 Identities=18% Similarity=0.314 Sum_probs=110.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC-CCe---eEEEECCccCcccc-ccccCCC-----CCCCchhhHHHHH-HhhccCc
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM-PSI---AVITMDNYNDSSRI-IDGNFDD-----PRLTDYDTLLENI-RGLKEGK 134 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll-p~~---g~I~~D~y~~~~r~-i~~~fq~-----p~~~d~~tl~e~L-~~L~~g~ 134 (509)
+.+|+|+|+||||||||++.|++.+ +.. ..+.+|.++..... .....+. +..+|...+.+.+ ..+..+.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~~l~~~~ 101 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVEWLTHQLFRQLKASH 101 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHHHHSSSSSCHHHHHHHTSSCHHHHHHHTGGGTTTCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHHHHHhcCCCCccCCCccccCHHHHHHHHHHHHhcCC
Confidence 3499999999999999999999987 222 33344665432210 0000000 2456777777765 5677778
Q ss_pred ceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHH
Q 010501 135 AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQI 214 (509)
Q Consensus 135 ~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y 214 (509)
.+..|.|++..+.... ........+++|+||.+++.+.+.+.+|..|||++|.++++.|.+.|+ +++..+|
T Consensus 102 ~~~~~~~~~~~~~~~~-~~~~~~~~~~vIveg~~l~~~~~~~~~d~~i~v~~~~~~~~~R~~~R~--------~~~~~~~ 172 (201)
T 1rz3_A 102 QLTLPFYDHETDTHSK-RTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCPREIRFARENDQV--------KQNIQKF 172 (201)
T ss_dssp EEEEEEEETTTTEEEE-EEEECTTCSEEEEEETTTTSTTTGGGCSEEEEECCC----------------------CHHHH
T ss_pred ccccCceeccCCCCCC-ceEEeCCCcEEEEechhhccHHHHhhcCEEEEEeCCHHHHHHHHhcCC--------HHHHHHH
Confidence 8899999998543322 234456678999999999888888899999999999999998888877 6677888
Q ss_pred HHhhhhHHHHhhcCC--CCceeEEEcCC
Q 010501 215 SETVYPMYKAFIEPD--LQTAHIKIINK 240 (509)
Q Consensus 215 ~~~V~P~~~~fIeP~--k~~ADIII~n~ 240 (509)
...+.|++..|+++. +..||++|+|+
T Consensus 173 ~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 173 INRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp HHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred HhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 788899999998776 68999999764
No 32
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=99.70 E-value=1.1e-17 Score=164.63 Aligned_cols=138 Identities=16% Similarity=0.129 Sum_probs=108.1
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhh--C-CCeeEEEECCccCcc--------ccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF--M-PSIAVITMDNYNDSS--------RII 108 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~l--l-p~~g~I~~D~y~~~~--------r~i 108 (509)
.+++++.++...+|+++||.+++|+ +++|+||||||||||+++|+++ + |..|.|.++|..... ..+
T Consensus 6 ~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 6 IRDLWASIDGETILKGVNLVVPKGE---VHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred EEeEEEEECCEEEEeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 4678898888899999999999999 9999999999999999999998 5 789999999974321 236
Q ss_pred cccCCCCCCCchhhHHHHHHhhc---cCc---------c-------eec--cccccCCCC-cCCCeeeeecCccEEEEec
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLK---EGK---------A-------VQV--PIYDFKSSS-RIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~---~g~---------~-------i~~--P~yD~~~~~-rsgg~~~~v~~a~VLIVEG 166 (509)
++++|+|..++..++.+++.... .+. . +.. ...+...++ .|+|+.+++..+++++.++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p 162 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEP 162 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCC
T ss_pred EEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCC
Confidence 78999999888888888875421 110 0 011 123444566 9999999999999999999
Q ss_pred ceeeeccccCCCCe
Q 010501 167 IYALSEKLRPLIDL 180 (509)
Q Consensus 167 i~aL~dElr~lLDl 180 (509)
.++++|||+..+|.
T Consensus 163 ~lllLDEPts~LD~ 176 (250)
T 2d2e_A 163 TYAVLDETDSGLDI 176 (250)
T ss_dssp SEEEEECGGGTTCH
T ss_pred CEEEEeCCCcCCCH
Confidence 99999999999997
No 33
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.70 E-value=5.6e-18 Score=169.70 Aligned_cols=157 Identities=9% Similarity=-0.025 Sum_probs=119.9
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc---------ccccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS---------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~---------~r~i~ 109 (509)
.+++++.++...+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.++|.... ++.++
T Consensus 24 ~~~l~~~y~~~~vL~~isl~i~~Ge---~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~ 100 (279)
T 2ihy_A 24 LDQIGRMKQGKTILKKISWQIAKGD---KWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIG 100 (279)
T ss_dssp EEEEEEEETTEEEEEEEEEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEE
T ss_pred EEeEEEEECCEEEEEeeeEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEE
Confidence 4678888888899999999999999 99999999999999999999999 78999999986532 23578
Q ss_pred ccCCCCCCCc--hhhHHHHHHhhcc------C--c-c-----------eec-cccccCCCCcCCCeeeeecCccEEEEec
Q 010501 110 GNFDDPRLTD--YDTLLENIRGLKE------G--K-A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 110 ~~fq~p~~~d--~~tl~e~L~~L~~------g--~-~-----------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEG 166 (509)
+++|++..+. ..++.+++..... + . . +.. ...+....+.|+|+.+++..+++++.++
T Consensus 101 ~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p 180 (279)
T 2ihy_A 101 FVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQP 180 (279)
T ss_dssp EECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred EEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCC
Confidence 9999875432 3488888865210 0 0 0 001 1224445678999999999999999999
Q ss_pred ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 167 i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
.++++|||+..+|. ...+.+..+.+++.+.|.+
T Consensus 181 ~lLlLDEPts~LD~-------~~~~~l~~~l~~l~~~g~t 213 (279)
T 2ihy_A 181 QVLILDEPAAGLDF-------IARESLLSILDSLSDSYPT 213 (279)
T ss_dssp SEEEEESTTTTCCH-------HHHHHHHHHHHHHHHHCTT
T ss_pred CEEEEeCCccccCH-------HHHHHHHHHHHHHHHCCCE
Confidence 99999999999998 3444555555555444443
No 34
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.70 E-value=2e-17 Score=162.17 Aligned_cols=156 Identities=19% Similarity=0.162 Sum_probs=122.9
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----cccccccCC
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----SRIIDGNFD 113 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----~r~i~~~fq 113 (509)
.+++++.++. +|+++||.+++ + +++|+||||||||||+++|++++ |..|.|.++|.... .+.++++||
T Consensus 4 ~~~l~~~y~~--~l~~isl~i~~-e---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (240)
T 2onk_A 4 KVRAEKRLGN--FRLNVDFEMGR-D---YCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp EEEEEEEETT--EEEEEEEEECS-S---EEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred EEEEEEEeCC--EEeeeEEEECC-E---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcC
Confidence 3578888875 49999999999 9 99999999999999999999999 78999999986432 245899999
Q ss_pred CCCCCchhhHHHHHHhhccCc--------------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCC
Q 010501 114 DPRLTDYDTLLENIRGLKEGK--------------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (509)
Q Consensus 114 ~p~~~d~~tl~e~L~~L~~g~--------------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lL 178 (509)
++..++..++.+++....... .+.. ...+...++.|+|+.+++..+++++.++.++++|||+..+
T Consensus 78 ~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~L 157 (240)
T 2onk_A 78 DYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAV 157 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSC
T ss_pred CCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccC
Confidence 998888889999987632110 0111 1224445678999999999999999999999999999999
Q ss_pred CeEEEeecCchHHHHHHHHHHHHH-cCCCHH
Q 010501 179 DLRVSVTGGVHFDLVKRVFRDIQR-VGQEPE 208 (509)
Q Consensus 179 DlkIfVd~d~dirLiRRI~RD~~e-rG~t~e 208 (509)
|. ...+.+..+.+++.+ .|.++.
T Consensus 158 D~-------~~~~~~~~~l~~l~~~~g~tvi 181 (240)
T 2onk_A 158 DL-------KTKGVLMEELRFVQREFDVPIL 181 (240)
T ss_dssp CH-------HHHHHHHHHHHHHHHHHTCCEE
T ss_pred CH-------HHHHHHHHHHHHHHHhcCCEEE
Confidence 98 345566666666643 476643
No 35
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=99.69 E-value=1.8e-17 Score=164.46 Aligned_cols=138 Identities=15% Similarity=0.129 Sum_probs=111.6
Q ss_pred eeeeEEEeC--c---EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----ccccc
Q 010501 40 EDTLSFEKG--F---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g--~---~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----~r~i~ 109 (509)
.+++++.++ . ..+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.++|.... .+.++
T Consensus 5 ~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge---~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 5 VVNVSHIFHRGTPLEKKALENVSLVINEGE---CLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp EEEEEEEESTTSTTCEEEEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEecCCCccccceeeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 467888886 4 689999999999999 99999999999999999999998 78999999997532 34588
Q ss_pred ccCCCC-CCCchhhHHHHHHhhccC----cc-----------eec---cccccCCCCcCCCeeeeecCccEEEEecceee
Q 010501 110 GNFDDP-RLTDYDTLLENIRGLKEG----KA-----------VQV---PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYAL 170 (509)
Q Consensus 110 ~~fq~p-~~~d~~tl~e~L~~L~~g----~~-----------i~~---P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL 170 (509)
+++|+| ..+...++.+++...... .. +.. ...+...+..|+|+.+++..+++++.++.+++
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lll 161 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILI 161 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 999996 455667999998763211 00 111 12234456789999999999999999999999
Q ss_pred eccccCCCCe
Q 010501 171 SEKLRPLIDL 180 (509)
Q Consensus 171 ~dElr~lLDl 180 (509)
+|||+..+|.
T Consensus 162 LDEPts~LD~ 171 (266)
T 2yz2_A 162 LDEPLVGLDR 171 (266)
T ss_dssp EESTTTTCCH
T ss_pred EcCccccCCH
Confidence 9999999997
No 36
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.69 E-value=2.7e-17 Score=161.67 Aligned_cols=139 Identities=17% Similarity=0.279 Sum_probs=112.4
Q ss_pred eeeeeeEEEe--CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccc
Q 010501 38 PIEDTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRI 107 (509)
Q Consensus 38 ~i~~~lsf~~--g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~ 107 (509)
...+++++.+ +...+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.++|.... ++.
T Consensus 8 ~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 8 ITFRNIRFRYKPDSPVILDNINLSIKQGE---VIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred eeEEEEEEEeCCCCcceeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 3457889988 46789999999999999 99999999999999999999999 78999999997532 135
Q ss_pred ccccCCCCCCCchhhHHHHHHhhccCcc---e-------ec-------c-----ccccCCCCcCCCeeeeecCccEEEEe
Q 010501 108 IDGNFDDPRLTDYDTLLENIRGLKEGKA---V-------QV-------P-----IYDFKSSSRIGYRTLEVPSSRIVIIE 165 (509)
Q Consensus 108 i~~~fq~p~~~d~~tl~e~L~~L~~g~~---i-------~~-------P-----~yD~~~~~rsgg~~~~v~~a~VLIVE 165 (509)
+++++|+|..++ .++.+++........ + .. | ..+......|+|+.+++..+++++.+
T Consensus 85 i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~ 163 (247)
T 2ff7_A 85 VGVVLQDNVLLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNN 163 (247)
T ss_dssp EEEECSSCCCTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTC
T ss_pred EEEEeCCCcccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcC
Confidence 789999998886 499999976421110 0 00 1 01122357899999999999999999
Q ss_pred cceeeeccccCCCCe
Q 010501 166 GIYALSEKLRPLIDL 180 (509)
Q Consensus 166 Gi~aL~dElr~lLDl 180 (509)
+.++++|||...+|.
T Consensus 164 p~lllLDEPts~LD~ 178 (247)
T 2ff7_A 164 PKILIFDEATSALDY 178 (247)
T ss_dssp CSEEEECCCCSCCCH
T ss_pred CCEEEEeCCcccCCH
Confidence 999999999999997
No 37
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.68 E-value=1.4e-17 Score=166.01 Aligned_cols=137 Identities=16% Similarity=0.180 Sum_probs=111.5
Q ss_pred eeeeEEEeCc---EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccc
Q 010501 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (509)
Q Consensus 40 ~~~lsf~~g~---~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i 108 (509)
.++++|.++. ..+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.++|.... ++.+
T Consensus 19 ~~~l~~~y~~~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 95 (271)
T 2ixe_A 19 FQDVSFAYPNHPNVQVLQGLTFTLYPGK---VTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQV 95 (271)
T ss_dssp EEEEEECCTTCTTSCCEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred EEEEEEEeCCCCCceeeEeeEEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccE
Confidence 4678888865 679999999999999 99999999999999999999999 78999999997432 1357
Q ss_pred cccCCCCCCCchhhHHHHHHhhccCcc----e-------e-------cc-----ccccCCCCcCCCeeeeecCccEEEEe
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKEGKA----V-------Q-------VP-----IYDFKSSSRIGYRTLEVPSSRIVIIE 165 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~g~~----i-------~-------~P-----~yD~~~~~rsgg~~~~v~~a~VLIVE 165 (509)
++++|++..++ .++.+++........ + . .| ..+......|+|+.+++..+++++.+
T Consensus 96 ~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~ 174 (271)
T 2ixe_A 96 AAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRK 174 (271)
T ss_dssp EEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTC
T ss_pred EEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcC
Confidence 89999998887 499999976321100 0 0 01 12333467899999999999999999
Q ss_pred cceeeeccccCCCCe
Q 010501 166 GIYALSEKLRPLIDL 180 (509)
Q Consensus 166 Gi~aL~dElr~lLDl 180 (509)
+.++|+|||...||.
T Consensus 175 p~lllLDEPts~LD~ 189 (271)
T 2ixe_A 175 PRLLILDNATSALDA 189 (271)
T ss_dssp CSEEEEESTTTTCCH
T ss_pred CCEEEEECCccCCCH
Confidence 999999999999997
No 38
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.67 E-value=2.7e-17 Score=162.37 Aligned_cols=151 Identities=16% Similarity=0.142 Sum_probs=120.1
Q ss_pred eeeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCC
Q 010501 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRL 117 (509)
Q Consensus 40 ~~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~ 117 (509)
.+++++.++ ...+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.. .+.+++++|++..
T Consensus 7 i~~l~~~y~~~~~vl~~isl~i~~Ge---~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~------~~~i~~v~q~~~~ 77 (253)
T 2nq2_C 7 VENLGFYYQAENFLFQQLNFDLNKGD---ILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV------YQSIGFVPQFFSS 77 (253)
T ss_dssp EEEEEEEETTTTEEEEEEEEEEETTC---EEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE------CSCEEEECSCCCC
T ss_pred EeeEEEEeCCCCeEEEEEEEEECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE------eccEEEEcCCCcc
Confidence 467888888 7889999999999999 99999999999999999999999 78999982 3468999999988
Q ss_pred CchhhHHHHHHhhcc---C-----c-c-----------eec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 118 TDYDTLLENIRGLKE---G-----K-A-----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 118 ~d~~tl~e~L~~L~~---g-----~-~-----------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
++..++.+++..... + . . +.. ...+...+..|+|+.+++..+++++.++.++++|||..
T Consensus 78 ~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts 157 (253)
T 2nq2_C 78 PFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTS 157 (253)
T ss_dssp SSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSST
T ss_pred CCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcc
Confidence 888899999876421 1 0 0 001 12344456789999999999999999999999999999
Q ss_pred CCCeEEEeecCchHHHHHHHHHHHHHc-CCC
Q 010501 177 LIDLRVSVTGGVHFDLVKRVFRDIQRV-GQE 206 (509)
Q Consensus 177 lLDlkIfVd~d~dirLiRRI~RD~~er-G~t 206 (509)
.+|. .....+..+.+++.+. |.+
T Consensus 158 ~LD~-------~~~~~l~~~l~~l~~~~g~t 181 (253)
T 2nq2_C 158 ALDL-------ANQDIVLSLLIDLAQSQNMT 181 (253)
T ss_dssp TSCH-------HHHHHHHHHHHHHHHTSCCE
T ss_pred cCCH-------HHHHHHHHHHHHHHHhcCCE
Confidence 9998 3455555566665544 554
No 39
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=99.65 E-value=7.1e-18 Score=176.70 Aligned_cols=137 Identities=13% Similarity=0.115 Sum_probs=111.2
Q ss_pred eeeeEEEe--CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCc-------cccccc
Q 010501 40 EDTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~--g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~-------~r~i~~ 110 (509)
.+++++.| +...+|++|||.+++|+ +++|+||||||||||+++|+++++..|.|.++|.... ++.+++
T Consensus 22 ~~~l~~~y~~~~~~~L~~vsl~i~~Ge---~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G~~i~~~~~~~~rr~ig~ 98 (390)
T 3gd7_A 22 VKDLTAKYTEGGNAILENISFSISPGQ---RVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDGVSWDSITLEQWRKAFGV 98 (390)
T ss_dssp EEEEEEESSSSSCCSEEEEEEEECTTC---EEEEEESTTSSHHHHHHHHHTCSEEEEEEEESSCBTTSSCHHHHHHTEEE
T ss_pred EEEEEEEecCCCeEEeeceeEEEcCCC---EEEEECCCCChHHHHHHHHhCCCCCCeEEEECCEECCcCChHHHhCCEEE
Confidence 57788888 66789999999999999 9999999999999999999999988899999997532 246899
Q ss_pred cCCCCCCCchhhHHHHHHhhccCc---------ceec-cccccCCCC-----------cCCCeeeeecCccEEEEeccee
Q 010501 111 NFDDPRLTDYDTLLENIRGLKEGK---------AVQV-PIYDFKSSS-----------RIGYRTLEVPSSRIVIIEGIYA 169 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~g~---------~i~~-P~yD~~~~~-----------rsgg~~~~v~~a~VLIVEGi~a 169 (509)
+||++..|+ .++.+|+....... .+.. ...+...+. .|+|++|++..+++|+.++.++
T Consensus 99 v~Q~~~lf~-~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lL 177 (390)
T 3gd7_A 99 IPQKVFIFS-GTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKIL 177 (390)
T ss_dssp ESCCCCCCS-EEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred EcCCcccCc-cCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEE
Confidence 999998887 59999986432110 0001 112223333 8999999999999999999999
Q ss_pred eeccccCCCCe
Q 010501 170 LSEKLRPLIDL 180 (509)
Q Consensus 170 L~dElr~lLDl 180 (509)
|+|||.+.||.
T Consensus 178 LLDEPts~LD~ 188 (390)
T 3gd7_A 178 LLDEPSAHLDP 188 (390)
T ss_dssp EEESHHHHSCH
T ss_pred EEeCCccCCCH
Confidence 99999999997
No 40
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.65 E-value=2.1e-17 Score=161.67 Aligned_cols=156 Identities=17% Similarity=0.216 Sum_probs=118.5
Q ss_pred eeeeEEEe-CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccccc
Q 010501 40 EDTLSFEK-GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~-g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~ 110 (509)
.++++|.+ +...+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.++|.... ++.+++
T Consensus 4 ~~~l~~~y~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 4 ARHVDFAYDDSEQILRDISFEAQPNS---IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp EEEEEECSSSSSCSEEEEEEEECTTE---EEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred EEEEEEEeCCCCceEEEeEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 45788887 56779999999999999 99999999999999999999999 78999999986431 235789
Q ss_pred cCCCCCCCchhhHHHHHHhh-ccCcc---e-------ecc-cc-----------ccCCCCcCCCeeeeecCccEEEEecc
Q 010501 111 NFDDPRLTDYDTLLENIRGL-KEGKA---V-------QVP-IY-----------DFKSSSRIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L-~~g~~---i-------~~P-~y-----------D~~~~~rsgg~~~~v~~a~VLIVEGi 167 (509)
++|+|..++ .++.+++... ..... + ... .. +......|+|+.+++..+++++.++.
T Consensus 81 v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 81 VSQDSAIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp ECCSSCCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EcCCCcccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 999998887 4999998764 21110 0 000 01 12235789999999999999999999
Q ss_pred eeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 168 YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 168 ~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
+++.|||...+|.. ....+..+.+++. .|.++
T Consensus 160 lllLDEPts~LD~~-------~~~~i~~~l~~~~-~~~tv 191 (243)
T 1mv5_A 160 ILMLDEATASLDSE-------SESMVQKALDSLM-KGRTT 191 (243)
T ss_dssp EEEEECCSCSSCSS-------SCCHHHHHHHHHH-TTSEE
T ss_pred EEEEECCcccCCHH-------HHHHHHHHHHHhc-CCCEE
Confidence 99999999999972 2334444555554 45543
No 41
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.65 E-value=8.9e-17 Score=163.31 Aligned_cols=137 Identities=20% Similarity=0.228 Sum_probs=112.3
Q ss_pred eeeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccccc
Q 010501 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~ 110 (509)
.++++|.|+ ...+|++|||.+++|+ +++|+||||||||||+++|++++ |..|.|.+||.... ++.+++
T Consensus 56 ~~~vs~~y~~~~~vL~~isl~i~~Ge---~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~ 132 (306)
T 3nh6_A 56 FENVHFSYADGRETLQDVSFTVMPGQ---TLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGV 132 (306)
T ss_dssp EEEEEEESSTTCEEEEEEEEEECTTC---EEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEE
T ss_pred EEEEEEEcCCCCceeeeeeEEEcCCC---EEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEE
Confidence 478899884 5789999999999999 99999999999999999999999 89999999998543 245899
Q ss_pred cCCCCCCCchhhHHHHHHhhccCcc-----------------eecc-ccc----cCCCCcCCCeeeeecCccEEEEecce
Q 010501 111 NFDDPRLTDYDTLLENIRGLKEGKA-----------------VQVP-IYD----FKSSSRIGYRTLEVPSSRIVIIEGIY 168 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~g~~-----------------i~~P-~yD----~~~~~rsgg~~~~v~~a~VLIVEGi~ 168 (509)
++|+|..|+ .++.+|+........ ...| .|+ ......|+|+.+++..+++++-++.+
T Consensus 133 v~Q~~~lf~-~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~i 211 (306)
T 3nh6_A 133 VPQDTVLFN-DTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGI 211 (306)
T ss_dssp ECSSCCCCS-EEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EecCCccCc-ccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCE
Confidence 999998885 599999976432100 0112 122 22246899999999999999999999
Q ss_pred eeeccccCCCCe
Q 010501 169 ALSEKLRPLIDL 180 (509)
Q Consensus 169 aL~dElr~lLDl 180 (509)
+++|||++.+|.
T Consensus 212 LlLDEPts~LD~ 223 (306)
T 3nh6_A 212 ILLDEATSALDT 223 (306)
T ss_dssp EEEECCSSCCCH
T ss_pred EEEECCcccCCH
Confidence 999999999997
No 42
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=99.65 E-value=5.1e-17 Score=161.45 Aligned_cols=138 Identities=12% Similarity=0.107 Sum_probs=109.6
Q ss_pred eeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC---CCeeEEEECCccCcc--------ccc
Q 010501 40 EDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM---PSIAVITMDNYNDSS--------RII 108 (509)
Q Consensus 40 ~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll---p~~g~I~~D~y~~~~--------r~i 108 (509)
.+++++.++...+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.++|..... ..+
T Consensus 23 ~~~l~~~y~~~~vl~~vsl~i~~Ge---~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 99 (267)
T 2zu0_C 23 IKDLHVSVEDKAILRGLSLDVHPGE---VHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGI 99 (267)
T ss_dssp EEEEEEEETTEEEEEEEEEEECTTC---EEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTE
T ss_pred EEeEEEEECCEEEEEeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCE
Confidence 4678888888899999999999999 99999999999999999999984 678999999874321 236
Q ss_pred cccCCCCCCCchhhHHHHHHhhc------cCc----------c-------eecc--ccccCCC-CcCCCeeeeecCccEE
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLK------EGK----------A-------VQVP--IYDFKSS-SRIGYRTLEVPSSRIV 162 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~------~g~----------~-------i~~P--~yD~~~~-~rsgg~~~~v~~a~VL 162 (509)
++++|++..++..++.+++.... .+. . +... ..+.... ..|+|+.+++..++++
T Consensus 100 ~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL 179 (267)
T 2zu0_C 100 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMA 179 (267)
T ss_dssp EEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHH
T ss_pred EEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHH
Confidence 78999998888777777764321 000 0 1111 1233334 4899999999999999
Q ss_pred EEecceeeeccccCCCCe
Q 010501 163 IIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 163 IVEGi~aL~dElr~lLDl 180 (509)
+.++.++++|||+..+|.
T Consensus 180 ~~~p~lLlLDEPts~LD~ 197 (267)
T 2zu0_C 180 VLEPELCILDESDSGLDI 197 (267)
T ss_dssp HHCCSEEEEESTTTTCCH
T ss_pred HhCCCEEEEeCCCCCCCH
Confidence 999999999999999997
No 43
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.63 E-value=7.9e-17 Score=158.87 Aligned_cols=152 Identities=9% Similarity=0.069 Sum_probs=118.2
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccccccC
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDGNF 112 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~~f 112 (509)
+++++. .+|+++||.+++|+ +++|+||||||||||+++|++++ |. |.|.++|.... ++.+++++
T Consensus 8 ~~l~~~----~vl~~vsl~i~~Ge---~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~ 79 (249)
T 2qi9_C 8 QDVAES----TRLGPLSGEVRAGE---ILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLS 79 (249)
T ss_dssp EEEEET----TTEEEEEEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred EceEEE----EEEeeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEEC
Confidence 455554 58999999999999 99999999999999999999999 78 99999987432 13578999
Q ss_pred CCCCCCchhhHHHHHHhhccCc-c----------eec-cccccCCCCcCCCeeeeecCccEEEEecc-------eeeecc
Q 010501 113 DDPRLTDYDTLLENIRGLKEGK-A----------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGI-------YALSEK 173 (509)
Q Consensus 113 q~p~~~d~~tl~e~L~~L~~g~-~----------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi-------~aL~dE 173 (509)
|++..++..++.+++....... . +.. ...+......|+|+.+++..+++++.++. ++++||
T Consensus 80 q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDE 159 (249)
T 2qi9_C 80 QQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDE 159 (249)
T ss_dssp SCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESS
T ss_pred CCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEEC
Confidence 9998888889999987642110 0 011 12344456789999999999999999999 999999
Q ss_pred ccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 174 LRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 174 lr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
|...+|. .....+..+.+++.+.|.++
T Consensus 160 Pts~LD~-------~~~~~l~~~l~~l~~~g~tv 186 (249)
T 2qi9_C 160 PMNSLDV-------AQQSALDKILSALSQQGLAI 186 (249)
T ss_dssp TTTTCCH-------HHHHHHHHHHHHHHHTTCEE
T ss_pred CcccCCH-------HHHHHHHHHHHHHHhCCCEE
Confidence 9999998 34555566666665446543
No 44
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=99.62 E-value=1.4e-16 Score=157.79 Aligned_cols=137 Identities=16% Similarity=0.185 Sum_probs=109.8
Q ss_pred eeeeEEEeCc---EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~---~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~-------~r~i~ 109 (509)
.++++|.++. ..+|+++||.+++|+ +++|+||||||||||+++|+++++..|.|.++|.... ++.++
T Consensus 20 i~~l~~~y~~~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~~~G~I~i~g~~i~~~~~~~~~~~i~ 96 (260)
T 2ghi_A 20 FSDVNFSYPKQTNHRTLKSINFFIPSGT---TCALVGHTGSGKSTIAKLLYRFYDAEGDIKIGGKNVNKYNRNSIRSIIG 96 (260)
T ss_dssp EEEEEECCTTCCSSCSEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGBCHHHHHTTEE
T ss_pred EEEEEEEeCCCCcCceeEeeEEEECCCC---EEEEECCCCCCHHHHHHHHhccCCCCeEEEECCEEhhhcCHHHHhccEE
Confidence 4678888865 369999999999999 9999999999999999999999955899999997432 23578
Q ss_pred ccCCCCCCCchhhHHHHHHhhccCc---ce--------------eccc-c----ccCCCCcCCCeeeeecCccEEEEecc
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEGK---AV--------------QVPI-Y----DFKSSSRIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g~---~i--------------~~P~-y----D~~~~~rsgg~~~~v~~a~VLIVEGi 167 (509)
+++|+|..++ .++.+++....... .+ ..|. + +......|+|+.+++..+++++.++.
T Consensus 97 ~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 175 (260)
T 2ghi_A 97 IVPQDTILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPK 175 (260)
T ss_dssp EECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCcccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCC
Confidence 9999998886 59999987532110 00 0111 1 12345789999999999999999999
Q ss_pred eeeeccccCCCCe
Q 010501 168 YALSEKLRPLIDL 180 (509)
Q Consensus 168 ~aL~dElr~lLDl 180 (509)
++++|||...+|.
T Consensus 176 lllLDEPts~LD~ 188 (260)
T 2ghi_A 176 IVIFDEATSSLDS 188 (260)
T ss_dssp EEEEECCCCTTCH
T ss_pred EEEEECccccCCH
Confidence 9999999999997
No 45
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.61 E-value=1.9e-16 Score=153.69 Aligned_cols=131 Identities=18% Similarity=0.096 Sum_probs=107.0
Q ss_pred eeeeEEEeC--cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCC
Q 010501 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR 116 (509)
Q Consensus 40 ~~~lsf~~g--~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~ 116 (509)
.+++++.++ ...+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.+++ .+++++|+|.
T Consensus 9 ~~~l~~~y~~~~~~il~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g------~i~~v~q~~~ 79 (229)
T 2pze_A 9 MENVTAFWEEGGTPVLKDINFKIERGQ---LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------RISFCSQFSW 79 (229)
T ss_dssp EEEEEECSSTTSCCSEEEEEEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS------CEEEECSSCC
T ss_pred EEEEEEEeCCCCceeeeeeEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC------EEEEEecCCc
Confidence 467888773 5789999999999999 99999999999999999999999 7999999987 4789999998
Q ss_pred CCchhhHHHHHHhhccCc-----------ce-----ecccc-----ccCCCCcCCCeeeeecCccEEEEecceeeecccc
Q 010501 117 LTDYDTLLENIRGLKEGK-----------AV-----QVPIY-----DFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (509)
Q Consensus 117 ~~d~~tl~e~L~~L~~g~-----------~i-----~~P~y-----D~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr 175 (509)
.++. ++.+++....... .+ ..|.. +......|+|+.+++..+++++.++.++++|||.
T Consensus 80 ~~~~-tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPt 158 (229)
T 2pze_A 80 IMPG-TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPF 158 (229)
T ss_dssp CCSB-CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTT
T ss_pred ccCC-CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 8775 9999987532100 00 01111 1123578999999999999999999999999999
Q ss_pred CCCCe
Q 010501 176 PLIDL 180 (509)
Q Consensus 176 ~lLDl 180 (509)
..+|.
T Consensus 159 s~LD~ 163 (229)
T 2pze_A 159 GYLDV 163 (229)
T ss_dssp TTSCH
T ss_pred cCCCH
Confidence 99997
No 46
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=99.60 E-value=1.3e-16 Score=155.83 Aligned_cols=131 Identities=18% Similarity=0.117 Sum_probs=107.4
Q ss_pred eeeeEEEeC--cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCC
Q 010501 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPR 116 (509)
Q Consensus 40 ~~~lsf~~g--~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~ 116 (509)
.+++++.++ ...+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.++| .+++++|+|.
T Consensus 6 ~~~l~~~y~~~~~~vl~~vsl~i~~Ge---~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g------~i~~v~Q~~~ 76 (237)
T 2cbz_A 6 VRNATFTWARSDPPTLNGITFSIPEGA---LVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG------SVAYVPQQAW 76 (237)
T ss_dssp EEEEEEESCTTSCCSEEEEEEEECTTC---EEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS------CEEEECSSCC
T ss_pred EEEEEEEeCCCCCceeeeeEEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC------EEEEEcCCCc
Confidence 467888886 4789999999999999 99999999999999999999999 7899999988 3788999986
Q ss_pred CCchhhHHHHHHhhccC--cc-------------ee-cc-----ccccCCCCcCCCeeeeecCccEEEEecceeeecccc
Q 010501 117 LTDYDTLLENIRGLKEG--KA-------------VQ-VP-----IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLR 175 (509)
Q Consensus 117 ~~d~~tl~e~L~~L~~g--~~-------------i~-~P-----~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr 175 (509)
. ...++.+++...... .. +. .| ..+......|+|+.+++..+++++.++.+++.|||.
T Consensus 77 ~-~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPt 155 (237)
T 2cbz_A 77 I-QNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPL 155 (237)
T ss_dssp C-CSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTT
T ss_pred C-CCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 4 467899998763211 00 00 01 013344678999999999999999999999999999
Q ss_pred CCCCe
Q 010501 176 PLIDL 180 (509)
Q Consensus 176 ~lLDl 180 (509)
..+|.
T Consensus 156 s~LD~ 160 (237)
T 2cbz_A 156 SAVDA 160 (237)
T ss_dssp TTSCH
T ss_pred cccCH
Confidence 99997
No 47
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=99.60 E-value=4.8e-16 Score=154.52 Aligned_cols=135 Identities=14% Similarity=0.074 Sum_probs=109.3
Q ss_pred eeeeEEEeCc----EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCc----ccccc-c
Q 010501 40 EDTLSFEKGF----FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS----SRIID-G 110 (509)
Q Consensus 40 ~~~lsf~~g~----~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~----~r~i~-~ 110 (509)
.+++++.++. ..+|+++||.++ |+ +++|+||||||||||+++|++++|..|.|.+++.... .+.++ +
T Consensus 4 ~~~l~~~y~~~~~~~~il~~vsl~i~-Ge---~~~i~G~NGsGKSTLlk~l~Gl~p~~G~I~~~g~~~~~~~~~~~i~~~ 79 (263)
T 2pjz_A 4 LKNVGITLSGKGYERFSLENINLEVN-GE---KVIILGPNGSGKTTLLRAISGLLPYSGNIFINGMEVRKIRNYIRYSTN 79 (263)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEEC-SS---EEEEECCTTSSHHHHHHHHTTSSCCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred EEEEEEEeCCCCccceeEEeeeEEEC-CE---EEEEECCCCCCHHHHHHHHhCCCCCCcEEEECCEECcchHHhhheEEE
Confidence 3567777766 789999999999 99 9999999999999999999998888999999986421 34678 9
Q ss_pred cCCCCCCCchhhHHHHHHhhcc--Cc----------ceec--cccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 111 NFDDPRLTDYDTLLENIRGLKE--GK----------AVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~--g~----------~i~~--P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
++|++.. ..++.+++..... .. .... ...+...++.|+|+.+++..+++++.++.++++|||++
T Consensus 80 v~Q~~~l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts 157 (263)
T 2pjz_A 80 LPEAYEI--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFE 157 (263)
T ss_dssp CGGGSCT--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTT
T ss_pred eCCCCcc--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 9999876 6788888865321 10 0111 12344456789999999999999999999999999999
Q ss_pred CCCe
Q 010501 177 LIDL 180 (509)
Q Consensus 177 lLDl 180 (509)
.+|.
T Consensus 158 ~LD~ 161 (263)
T 2pjz_A 158 NVDA 161 (263)
T ss_dssp TCCH
T ss_pred ccCH
Confidence 9997
No 48
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=99.56 E-value=8.7e-16 Score=167.58 Aligned_cols=162 Identities=16% Similarity=0.186 Sum_probs=123.5
Q ss_pred eeeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
.++++|.++. ..+|+++|+.+++|+ +++|+||||||||||+++|++++ |..|.|.+||.... ++.++
T Consensus 344 ~~~v~~~y~~~~~~~l~~i~l~i~~G~---~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 420 (582)
T 3b5x_A 344 VKDVTFTYQGKEKPALSHVSFSIPQGK---TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFA 420 (582)
T ss_pred EEEEEEEcCCCCccccccceEEECCCC---EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeE
Confidence 4678888864 679999999999999 99999999999999999999999 78999999997432 24589
Q ss_pred ccCCCCCCCchhhHHHHHHhhc-cCcc---e--------------ecc-cccc----CCCCcCCCeeeeecCccEEEEec
Q 010501 110 GNFDDPRLTDYDTLLENIRGLK-EGKA---V--------------QVP-IYDF----KSSSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~-~g~~---i--------------~~P-~yD~----~~~~rsgg~~~~v~~a~VLIVEG 166 (509)
+++|+|..++ .++.+|+.... .... + ..| .||. .....|+|+++++..+++++-++
T Consensus 421 ~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p 499 (582)
T 3b5x_A 421 LVSQNVHLFN-DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDA 499 (582)
T ss_pred EEcCCCcccc-ccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCC
Confidence 9999999887 49999997643 1110 0 011 1222 22467999999999999999999
Q ss_pred ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHH
Q 010501 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (509)
Q Consensus 167 i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~ 213 (509)
.+++.|||++.+|. ...+.+.+..+++. +|.+..-+.|+
T Consensus 500 ~illlDEpts~LD~-------~~~~~i~~~l~~~~-~~~tvi~itH~ 538 (582)
T 3b5x_A 500 PVLILDEATSALDT-------ESERAIQAALDELQ-KNKTVLVIAHR 538 (582)
T ss_pred CEEEEECccccCCH-------HHHHHHHHHHHHHc-CCCEEEEEecC
Confidence 99999999999997 33444555555543 36655444443
No 49
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=99.55 E-value=2.3e-15 Score=164.20 Aligned_cols=137 Identities=16% Similarity=0.164 Sum_probs=111.9
Q ss_pred eeeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
.++++|.++. ..+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.+||.... ++.++
T Consensus 344 ~~~v~~~y~~~~~~~l~~v~~~i~~G~---~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 420 (582)
T 3b60_A 344 FRNVTFTYPGREVPALRNINLKIPAGK---TVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVA 420 (582)
T ss_dssp EEEEEECSSSSSCCSEEEEEEEECTTC---EEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEE
T ss_pred EEEEEEEcCCCCCccccceeEEEcCCC---EEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCe
Confidence 4678888863 679999999999999 99999999999999999999998 79999999997532 23589
Q ss_pred ccCCCCCCCchhhHHHHHHhhc-cCcc---e--------------ecc-cccc----CCCCcCCCeeeeecCccEEEEec
Q 010501 110 GNFDDPRLTDYDTLLENIRGLK-EGKA---V--------------QVP-IYDF----KSSSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~-~g~~---i--------------~~P-~yD~----~~~~rsgg~~~~v~~a~VLIVEG 166 (509)
+++|+|..++. ++.+|+.... .... + ..| .+|. .....|+|+++++..+++++-++
T Consensus 421 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p 499 (582)
T 3b60_A 421 LVSQNVHLFND-TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDS 499 (582)
T ss_dssp EECSSCCCCSS-BHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCC
T ss_pred EEccCCcCCCC-CHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCC
Confidence 99999998874 9999998643 1110 0 011 1222 22467999999999999999999
Q ss_pred ceeeeccccCCCCe
Q 010501 167 IYALSEKLRPLIDL 180 (509)
Q Consensus 167 i~aL~dElr~lLDl 180 (509)
.++++|||++.+|.
T Consensus 500 ~illlDEpts~LD~ 513 (582)
T 3b60_A 500 PILILDEATSALDT 513 (582)
T ss_dssp SEEEEETTTSSCCH
T ss_pred CEEEEECccccCCH
Confidence 99999999999997
No 50
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=99.53 E-value=3.5e-15 Score=163.18 Aligned_cols=137 Identities=17% Similarity=0.231 Sum_probs=111.8
Q ss_pred eeeeEEEeCc---EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccc
Q 010501 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (509)
Q Consensus 40 ~~~lsf~~g~---~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i 108 (509)
.++++|.++. ..+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.+||.... ++.+
T Consensus 344 ~~~v~~~y~~~~~~~vl~~isl~i~~G~---~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i 420 (595)
T 2yl4_A 344 FKNVHFAYPARPEVPIFQDFSLSIPSGS---VTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQLNPVWLRSKI 420 (595)
T ss_dssp EEEEEEECSSCTTSEEEEEEEEEECTTC---EEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTBCHHHHHHSE
T ss_pred EEEEEEEeCCCCCCccccceEEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhCCHHHHHhce
Confidence 4678888864 479999999999999 99999999999999999999998 79999999997532 2358
Q ss_pred cccCCCCCCCchhhHHHHHHhhccC---cc---e--------------ecc-ccccCC----CCcCCCeeeeecCccEEE
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKEG---KA---V--------------QVP-IYDFKS----SSRIGYRTLEVPSSRIVI 163 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~g---~~---i--------------~~P-~yD~~~----~~rsgg~~~~v~~a~VLI 163 (509)
++++|+|..++ .++.+|+...... .. + ..| .+|... ...|+|+++++..+++++
T Consensus 421 ~~v~Q~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~ 499 (595)
T 2yl4_A 421 GTVSQEPILFS-CSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALL 499 (595)
T ss_dssp EEECSSCCCCS-SBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHH
T ss_pred EEEccCCcccC-CCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHH
Confidence 99999999887 4999999764321 00 0 012 133322 568999999999999999
Q ss_pred EecceeeeccccCCCCe
Q 010501 164 IEGIYALSEKLRPLIDL 180 (509)
Q Consensus 164 VEGi~aL~dElr~lLDl 180 (509)
-++.++++|||++.+|.
T Consensus 500 ~~p~illlDEpts~LD~ 516 (595)
T 2yl4_A 500 KNPKILLLDEATSALDA 516 (595)
T ss_dssp HCCSEEEEECCCSSCCH
T ss_pred cCCCEEEEECcccCCCH
Confidence 99999999999999997
No 51
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.52 E-value=2.9e-15 Score=163.92 Aligned_cols=137 Identities=17% Similarity=0.236 Sum_probs=111.9
Q ss_pred eeeeEEEe--CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEK--GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~--g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
.++++|.+ +...+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.+||.... ++.++
T Consensus 344 ~~~v~~~y~~~~~~~l~~isl~i~~Ge---~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~ 420 (587)
T 3qf4_A 344 FENVEFRYFENTDPVLSGVNFSVKPGS---LVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHIS 420 (587)
T ss_dssp EEEEEECSSSSSCCSEEEEEEEECTTC---EEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEE
T ss_pred EEEEEEEcCCCCCcceeceEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheE
Confidence 46788887 34679999999999999 99999999999999999999999 78999999998543 24589
Q ss_pred ccCCCCCCCchhhHHHHHHhhccCcc-----------------eecc-ccc----cCCCCcCCCeeeeecCccEEEEecc
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEGKA-----------------VQVP-IYD----FKSSSRIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g~~-----------------i~~P-~yD----~~~~~rsgg~~~~v~~a~VLIVEGi 167 (509)
+++|+|..++. ++++|+........ ...| .++ ......|+|++|++..+++++-++.
T Consensus 421 ~v~Q~~~lf~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~ 499 (587)
T 3qf4_A 421 AVPQETVLFSG-TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPK 499 (587)
T ss_dssp EECSSCCCCSE-EHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCS
T ss_pred EECCCCcCcCc-cHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCC
Confidence 99999998864 99999975432110 0112 122 2235679999999999999999999
Q ss_pred eeeeccccCCCCe
Q 010501 168 YALSEKLRPLIDL 180 (509)
Q Consensus 168 ~aL~dElr~lLDl 180 (509)
++++|||++.+|.
T Consensus 500 illlDEpts~LD~ 512 (587)
T 3qf4_A 500 VLILDDCTSSVDP 512 (587)
T ss_dssp EEEEESCCTTSCH
T ss_pred EEEEECCcccCCH
Confidence 9999999999997
No 52
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=99.51 E-value=5.1e-15 Score=161.54 Aligned_cols=137 Identities=22% Similarity=0.228 Sum_probs=111.6
Q ss_pred eeeeEEEeC--cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------ccccc
Q 010501 40 EDTLSFEKG--FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIID 109 (509)
Q Consensus 40 ~~~lsf~~g--~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~ 109 (509)
.++++|.++ ..++|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.+||.... ++.++
T Consensus 342 ~~~v~~~y~~~~~~~l~~isl~i~~G~---~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~ 418 (578)
T 4a82_A 342 IDHVSFQYNDNEAPILKDINLSIEKGE---TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIG 418 (578)
T ss_dssp EEEEEECSCSSSCCSEEEEEEEECTTC---EEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEE
T ss_pred EEEEEEEcCCCCCcceeeeEEEECCCC---EEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 477888875 3579999999999999 99999999999999999999999 78999999997543 23589
Q ss_pred ccCCCCCCCchhhHHHHHHhhccCcc-----------------eecc-ccccCC----CCcCCCeeeeecCccEEEEecc
Q 010501 110 GNFDDPRLTDYDTLLENIRGLKEGKA-----------------VQVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGI 167 (509)
Q Consensus 110 ~~fq~p~~~d~~tl~e~L~~L~~g~~-----------------i~~P-~yD~~~----~~rsgg~~~~v~~a~VLIVEGi 167 (509)
+++|+|..++. ++.+|+........ ...| .++... ...|+|+++++..+++++-++.
T Consensus 419 ~v~Q~~~l~~~-tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~ 497 (578)
T 4a82_A 419 LVQQDNILFSD-TVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPP 497 (578)
T ss_dssp EECSSCCCCSS-BHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCS
T ss_pred EEeCCCccCcc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCC
Confidence 99999988875 99999976432110 0112 222222 3678999999999999999999
Q ss_pred eeeeccccCCCCe
Q 010501 168 YALSEKLRPLIDL 180 (509)
Q Consensus 168 ~aL~dElr~lLDl 180 (509)
++++|||.+.+|.
T Consensus 498 illlDEpts~LD~ 510 (578)
T 4a82_A 498 ILILDEATSALDL 510 (578)
T ss_dssp EEEEESTTTTCCH
T ss_pred EEEEECccccCCH
Confidence 9999999999997
No 53
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=99.49 E-value=4.2e-15 Score=162.92 Aligned_cols=137 Identities=17% Similarity=0.203 Sum_probs=110.8
Q ss_pred eeeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccccc
Q 010501 40 EDTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRIIDG 110 (509)
Q Consensus 40 ~~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i~~ 110 (509)
.++++|.++ ...+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.+||.... ++.+++
T Consensus 357 ~~~v~~~y~~~~~~l~~isl~i~~G~---~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 433 (598)
T 3qf4_B 357 FKNVWFSYDKKKPVLKDITFHIKPGQ---KVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGI 433 (598)
T ss_dssp EEEEECCSSSSSCSCCSEEEECCTTC---EEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEEECCCCCccccceEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEE
Confidence 467888775 4579999999999999 99999999999999999999999 89999999997543 235899
Q ss_pred cCCCCCCCchhhHHHHHHhhccCc---ce--------------ecc-ccccCC----CCcCCCeeeeecCccEEEEecce
Q 010501 111 NFDDPRLTDYDTLLENIRGLKEGK---AV--------------QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEGIY 168 (509)
Q Consensus 111 ~fq~p~~~d~~tl~e~L~~L~~g~---~i--------------~~P-~yD~~~----~~rsgg~~~~v~~a~VLIVEGi~ 168 (509)
++|+|..++ .++.+|+....... .+ ..| .|+... ...|+|++|++..+++++-++.+
T Consensus 434 v~Q~~~lf~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~i 512 (598)
T 3qf4_B 434 VLQDTILFS-TTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKI 512 (598)
T ss_dssp ECTTCCCCS-SBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSE
T ss_pred EeCCCcccc-ccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 999998886 59999997643211 00 011 122211 46799999999999999999999
Q ss_pred eeeccccCCCCe
Q 010501 169 ALSEKLRPLIDL 180 (509)
Q Consensus 169 aL~dElr~lLDl 180 (509)
+++|||++.+|.
T Consensus 513 lllDEpts~LD~ 524 (598)
T 3qf4_B 513 LILDEATSNVDT 524 (598)
T ss_dssp EEECCCCTTCCH
T ss_pred EEEECCccCCCH
Confidence 999999999997
No 54
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=99.46 E-value=8.5e-15 Score=147.53 Aligned_cols=127 Identities=19% Similarity=0.158 Sum_probs=98.1
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCCc
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~d 119 (509)
++++|. ...+|+++||.+++|+ +++|+||||||||||+++|++++ |..|.|.+++ .+++++|++..++
T Consensus 44 ~~l~~~--~~~vl~~isl~i~~Ge---~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------~i~~v~Q~~~l~~ 112 (290)
T 2bbs_A 44 SNFSLL--GTPVLKDINFKIERGQ---LLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------RISFCSQNSWIMP 112 (290)
T ss_dssp --------CCCSEEEEEEEECTTC---EEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS------CEEEECSSCCCCS
T ss_pred EEEEEc--CceEEEeeEEEEcCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC------EEEEEeCCCccCc
Confidence 456653 3578999999999999 99999999999999999999999 6899999987 4789999998877
Q ss_pred hhhHHHHHHhhccCc-----------ce-----ecccc-----ccCCCCcCCCeeeeecCccEEEEecceeeeccccCCC
Q 010501 120 YDTLLENIRGLKEGK-----------AV-----QVPIY-----DFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI 178 (509)
Q Consensus 120 ~~tl~e~L~~L~~g~-----------~i-----~~P~y-----D~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lL 178 (509)
. ++.+++. ..... .+ ..|.. +......|+|+.+++..+++++.++.++++|||...+
T Consensus 113 ~-tv~enl~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~L 190 (290)
T 2bbs_A 113 G-TIKENII-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 190 (290)
T ss_dssp S-BHHHHHH-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTC
T ss_pred c-cHHHHhh-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccC
Confidence 5 8999886 21100 00 01110 1112578999999999999999999999999999999
Q ss_pred Ce
Q 010501 179 DL 180 (509)
Q Consensus 179 Dl 180 (509)
|.
T Consensus 191 D~ 192 (290)
T 2bbs_A 191 DV 192 (290)
T ss_dssp CH
T ss_pred CH
Confidence 97
No 55
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.41 E-value=3.7e-14 Score=167.69 Aligned_cols=162 Identities=19% Similarity=0.266 Sum_probs=124.0
Q ss_pred eeeeEEEeCc---EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccc
Q 010501 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (509)
Q Consensus 40 ~~~lsf~~g~---~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i 108 (509)
.++++|.|+. .++|+++||.+++|+ +++|+||||||||||+++|.+++ |..|.|.+||.... ++.+
T Consensus 390 ~~~v~~~y~~~~~~~vL~~isl~i~~G~---~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 466 (1284)
T 3g5u_A 390 FKNIHFSYPSRKEVQILKGLNLKVKSGQ---TVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREII 466 (1284)
T ss_dssp EEEEEECCSSTTSCCSEEEEEEEECTTC---EEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHE
T ss_pred EEEEEEEcCCCCCCcceecceEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhhe
Confidence 4678888853 469999999999999 99999999999999999999999 78999999997532 2358
Q ss_pred cccCCCCCCCchhhHHHHHHhhccCcc-----------------eecc-ccccCC----CCcCCCeeeeecCccEEEEec
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKEGKA-----------------VQVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~g~~-----------------i~~P-~yD~~~----~~rsgg~~~~v~~a~VLIVEG 166 (509)
++++|+|..++. ++.+|+........ ...| .||... ...|+|++|++..+++++-++
T Consensus 467 ~~v~Q~~~l~~~-ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p 545 (1284)
T 3g5u_A 467 GVVSQEPVLFAT-TIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNP 545 (1284)
T ss_dssp EEECSSCCCCSS-CHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCC
T ss_pred EEEcCCCccCCc-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCC
Confidence 999999988865 99999976432110 0123 233322 357899999999999999999
Q ss_pred ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHH
Q 010501 167 IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (509)
Q Consensus 167 i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~ 213 (509)
.++++||+++.+|. ...+.+....+.. .+|+|..-|.|+
T Consensus 546 ~iliLDEpts~LD~-------~~~~~i~~~l~~~-~~~~t~i~itH~ 584 (1284)
T 3g5u_A 546 KILLLDEATSALDT-------ESEAVVQAALDKA-REGRTTIVIAHR 584 (1284)
T ss_dssp SEEEEESTTCSSCH-------HHHHHHHHHHHHH-HTTSEEEEECSC
T ss_pred CEEEEECCCCCCCH-------HHHHHHHHHHHHH-cCCCEEEEEecC
Confidence 99999999999997 2344555555543 346665444443
No 56
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.36 E-value=2.8e-13 Score=147.06 Aligned_cols=150 Identities=17% Similarity=0.208 Sum_probs=112.7
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCCc
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~d 119 (509)
+++++.++.. .++.+++.+.+|+ ++||+||||||||||+++|++++ |..|.|.+ ...+++++|++....
T Consensus 291 ~~l~~~~~~~-~l~~~~~~i~~Ge---~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~------~~~i~~v~Q~~~~~~ 360 (538)
T 1yqt_A 291 PRLVKDYGSF-RLEVEPGEIKKGE---VIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW------DLTVAYKPQYIKADY 360 (538)
T ss_dssp CCEEEEETTE-EEEECCEEEETTC---EEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC------CCCEEEECSSCCCCC
T ss_pred eeEEEEECCE-EEEeCccccCCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE------CceEEEEecCCcCCC
Confidence 4566666653 6889999999999 99999999999999999999998 67888865 235788999876655
Q ss_pred hhhHHHHHHhh-ccC----c-------cee-ccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeec
Q 010501 120 YDTLLENIRGL-KEG----K-------AVQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (509)
Q Consensus 120 ~~tl~e~L~~L-~~g----~-------~i~-~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~ 186 (509)
..++.+++... ... . ... .+..+...+..|+|+.+++..+++++.++.++++|||++.+|+
T Consensus 361 ~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~------ 434 (538)
T 1yqt_A 361 EGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDV------ 434 (538)
T ss_dssp SSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCH------
T ss_pred CCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH------
Confidence 55666665433 100 0 011 1233455567899999999999999999999999999999998
Q ss_pred CchHHHHHHHHHHHH-HcCCCH
Q 010501 187 GVHFDLVKRVFRDIQ-RVGQEP 207 (509)
Q Consensus 187 d~dirLiRRI~RD~~-erG~t~ 207 (509)
.....+..+.+++. +.|.++
T Consensus 435 -~~~~~i~~~l~~l~~~~g~tv 455 (538)
T 1yqt_A 435 -EQRLAVSRAIRHLMEKNEKTA 455 (538)
T ss_dssp -HHHHHHHHHHHHHHHHHTCEE
T ss_pred -HHHHHHHHHHHHHHHhCCCEE
Confidence 34555666666664 456654
No 57
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.35 E-value=2.4e-13 Score=149.69 Aligned_cols=151 Identities=16% Similarity=0.198 Sum_probs=113.7
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCCc
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~d 119 (509)
+++++.++.. .++.+++.+.+|+ ++||+||||||||||+++|++++ |..|.|.+ ...+++++|++....
T Consensus 361 ~~l~~~~~~~-~l~~~~~~v~~Ge---i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~------~~~i~~v~Q~~~~~~ 430 (607)
T 3bk7_A 361 PRLVKDYGSF-KLEVEPGEIRKGE---VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW------DLTVAYKPQYIKAEY 430 (607)
T ss_dssp CCEEEECSSC-EEEECCEEEETTC---EEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC------CCCEEEECSSCCCCC
T ss_pred eceEEEecce-EEEecccccCCCC---EEEEECCCCCCHHHHHHHHhcCCCCCceEEEE------eeEEEEEecCccCCC
Confidence 5566666653 6889999999999 99999999999999999999998 78888865 245788999886655
Q ss_pred hhhHHHHHHhh-ccC----c-------ceec-cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeec
Q 010501 120 YDTLLENIRGL-KEG----K-------AVQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTG 186 (509)
Q Consensus 120 ~~tl~e~L~~L-~~g----~-------~i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~ 186 (509)
..++.+++... ... . .+.. +..+...+..|+|+.+++..+++++.++.++|+|||++.||.
T Consensus 431 ~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~------ 504 (607)
T 3bk7_A 431 EGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDV------ 504 (607)
T ss_dssp SSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCH------
T ss_pred CCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCH------
Confidence 56776666443 100 0 0111 234555678899999999999999999999999999999998
Q ss_pred CchHHHHHHHHHHHH-HcCCCHH
Q 010501 187 GVHFDLVKRVFRDIQ-RVGQEPE 208 (509)
Q Consensus 187 d~dirLiRRI~RD~~-erG~t~e 208 (509)
.....+.++++++. +.|.++.
T Consensus 505 -~~~~~l~~~l~~l~~~~g~tvi 526 (607)
T 3bk7_A 505 -EQRLAVSRAIRHLMEKNEKTAL 526 (607)
T ss_dssp -HHHHHHHHHHHHHHHHTTCEEE
T ss_pred -HHHHHHHHHHHHHHHhCCCEEE
Confidence 34555666666664 4566543
No 58
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.34 E-value=1.5e-12 Score=122.19 Aligned_cols=160 Identities=16% Similarity=0.255 Sum_probs=101.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCccccccc------cCCCCCCCchhhHHHHHHhhccCcceecc
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDG------NFDDPRLTDYDTLLENIRGLKEGKAVQVP 139 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~r~i~~------~fq~p~~~d~~tl~e~L~~L~~g~~i~~P 139 (509)
+.+|+|+|++||||||+++.|++.++....+..|++......+.. .++.+..++...+.+.+..+..+. ..|
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~--~~~ 98 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMESA--RHS 98 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHHH--TTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhCC--CCC
Confidence 449999999999999999999998877889999988543322211 122233345555555554433211 111
Q ss_pred ccccCCCCcCCCeeeeecCccEEEEecceeee-ccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Q 010501 140 IYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETV 218 (509)
Q Consensus 140 ~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~-dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V 218 (509)
.. .. ........+++|+||.+++. ..+.+..|..+|++++.+.++.|.. .|+.+.+.+..+|..++
T Consensus 99 ~~-------~~-~~~~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~-----~R~~~~e~~~~~~~~~~ 165 (207)
T 2qt1_A 99 VV-------ST-DQESAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRS-----TRVYQPPDSPGYFDGHV 165 (207)
T ss_dssp SC-------CC------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHH-----HSCCSSCCCTTHHHHTH
T ss_pred Cc-------CC-CeeecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHH-----HcCCCccchHHHHHHHH
Confidence 11 11 11114456799999988775 4677888999999999988765543 34655555555666678
Q ss_pred hhHHHHhhcCCCCceeEE--EcCC
Q 010501 219 YPMYKAFIEPDLQTAHIK--IINK 240 (509)
Q Consensus 219 ~P~~~~fIeP~k~~ADII--I~n~ 240 (509)
++.|..+++.....||.+ |.++
T Consensus 166 ~~~~~~~~~~~~~~~~~v~~Id~~ 189 (207)
T 2qt1_A 166 WPMYLKYRQEMQDITWEVVYLDGT 189 (207)
T ss_dssp HHHHHHHHHHGGGCSSCCEEEETT
T ss_pred hHHHHHHHHHHHhcCCeEEEecCC
Confidence 888877665444555543 5443
No 59
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.34 E-value=1.2e-13 Score=163.65 Aligned_cols=137 Identities=20% Similarity=0.272 Sum_probs=112.4
Q ss_pred eeeeEEEeC---cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc-------ccc
Q 010501 40 EDTLSFEKG---FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------RII 108 (509)
Q Consensus 40 ~~~lsf~~g---~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~-------r~i 108 (509)
.++++|.|. ..++|+++||.+++|+ .++|+||||||||||++.|.+++ |..|.|.+||.+... +.+
T Consensus 418 ~~nvsF~Y~~~~~~~vL~~isl~i~~G~---~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i 494 (1321)
T 4f4c_A 418 VENVHFTYPSRPDVPILRGMNLRVNAGQ---TVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNV 494 (1321)
T ss_dssp EEEEEECCSSSTTSCSEEEEEEEECTTC---EEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred EEEeeeeCCCCCCCceeeceEEeecCCc---EEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcc
Confidence 578899874 4579999999999999 99999999999999999999999 899999999975432 468
Q ss_pred cccCCCCCCCchhhHHHHHHhhccCcc----------------e-ecc-ccccCC----CCcCCCeeeeecCccEEEEec
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKEGKA----------------V-QVP-IYDFKS----SSRIGYRTLEVPSSRIVIIEG 166 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~g~~----------------i-~~P-~yD~~~----~~rsgg~~~~v~~a~VLIVEG 166 (509)
++++|+|..|+ .++++||........ + ..| .||-.. ...|||++|+++.+|+++-++
T Consensus 495 ~~v~Q~~~Lf~-~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~ 573 (1321)
T 4f4c_A 495 AVVSQEPALFN-CTIEENISLGKEGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNP 573 (1321)
T ss_dssp EEECSSCCCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCC
T ss_pred cccCCcceeeC-CchhHHHhhhcccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCC
Confidence 99999998775 689999976543210 1 123 233322 246899999999999999999
Q ss_pred ceeeeccccCCCCe
Q 010501 167 IYALSEKLRPLIDL 180 (509)
Q Consensus 167 i~aL~dElr~lLDl 180 (509)
..+++||+++.+|.
T Consensus 574 ~IliLDE~tSaLD~ 587 (1321)
T 4f4c_A 574 KILLLDEATSALDA 587 (1321)
T ss_dssp SEEEEESTTTTSCT
T ss_pred CEEEEecccccCCH
Confidence 99999999999997
No 60
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.34 E-value=6.2e-13 Score=144.46 Aligned_cols=151 Identities=13% Similarity=0.157 Sum_probs=112.5
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCCc
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTD 119 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~d 119 (509)
.+++..++.. .+..+++.+.+|+ ++||+||||||||||+++|++++ |..|.|.+++ ..+++.+|++....
T Consensus 273 ~~l~~~~~~~-~l~~~~~~i~~Ge---i~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~-----~~i~~~~q~~~~~~ 343 (538)
T 3ozx_A 273 TKIIKKLGDF-QLVVDNGEAKEGE---IIGILGPNGIGKTTFARILVGEITADEGSVTPEK-----QILSYKPQRIFPNY 343 (538)
T ss_dssp CCEEEEETTE-EEEECCEEEETTC---EEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-----CCEEEECSSCCCCC
T ss_pred cceEEEECCE-EEEeccceECCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----eeeEeechhccccc
Confidence 4566666653 4777899999999 99999999999999999999998 7889998764 24566777665544
Q ss_pred hhhHHHHHHhhccCc-------------cee-ccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEee
Q 010501 120 YDTLLENIRGLKEGK-------------AVQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT 185 (509)
Q Consensus 120 ~~tl~e~L~~L~~g~-------------~i~-~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd 185 (509)
..++.+++....... .+. ....+...+..|+|+.+++..+++++.++.++++|||+..+|.
T Consensus 344 ~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~----- 418 (538)
T 3ozx_A 344 DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDV----- 418 (538)
T ss_dssp SSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH-----
T ss_pred CCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH-----
Confidence 567777776532111 000 1223455678899999999999999999999999999999998
Q ss_pred cCchHHHHHHHHHHHHH-cCCCH
Q 010501 186 GGVHFDLVKRVFRDIQR-VGQEP 207 (509)
Q Consensus 186 ~d~dirLiRRI~RD~~e-rG~t~ 207 (509)
.....+.++++++.+ .|.++
T Consensus 419 --~~~~~i~~~l~~l~~~~g~tv 439 (538)
T 3ozx_A 419 --EERYIVAKAIKRVTRERKAVT 439 (538)
T ss_dssp --HHHHHHHHHHHHHHHHTTCEE
T ss_pred --HHHHHHHHHHHHHHHhCCCEE
Confidence 345556666666653 46653
No 61
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=99.32 E-value=4.1e-13 Score=158.82 Aligned_cols=137 Identities=18% Similarity=0.242 Sum_probs=110.4
Q ss_pred eeeeEEEeCc---EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccc
Q 010501 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (509)
Q Consensus 40 ~~~lsf~~g~---~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i 108 (509)
.++++|.|+. .++|+++||.+++|+ ++||+||||||||||+++|.+++ |..|.|.+||.... ++.+
T Consensus 1033 ~~~v~~~y~~~~~~~~l~~vsl~i~~Ge---~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i 1109 (1284)
T 3g5u_A 1033 FSGVVFNYPTRPSIPVLQGLSLEVKKGQ---TLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQL 1109 (1284)
T ss_dssp EEEEEBCCSCGGGCCSBSSCCEEECSSS---EEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSC
T ss_pred EEEEEEECCCCCCCeeecceeEEEcCCC---EEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhce
Confidence 4678887753 369999999999999 99999999999999999999998 89999999997543 2458
Q ss_pred cccCCCCCCCchhhHHHHHHhhccCc-----c--------------eecc-ccccCC----CCcCCCeeeeecCccEEEE
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKEGK-----A--------------VQVP-IYDFKS----SSRIGYRTLEVPSSRIVII 164 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~g~-----~--------------i~~P-~yD~~~----~~rsgg~~~~v~~a~VLIV 164 (509)
++++|+|..++ .++.+|+....... . -..| .||-.. ...|+|++|++..+++++-
T Consensus 1110 ~~v~Q~~~l~~-~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~ 1188 (1284)
T 3g5u_A 1110 GIVSQEPILFD-CSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVR 1188 (1284)
T ss_dssp EEEESSCCCCS-SBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHH
T ss_pred EEECCCCcccc-ccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHc
Confidence 99999998775 58999986432110 0 0112 243332 3578999999999999999
Q ss_pred ecceeeeccccCCCCe
Q 010501 165 EGIYALSEKLRPLIDL 180 (509)
Q Consensus 165 EGi~aL~dElr~lLDl 180 (509)
++.++++|||+..+|.
T Consensus 1189 ~p~iLiLDEpTs~lD~ 1204 (1284)
T 3g5u_A 1189 QPHILLLDEATSALDT 1204 (1284)
T ss_dssp CCSSEEEESCSSSCCH
T ss_pred CCCEEEEeCCcccCCH
Confidence 9999999999999997
No 62
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=99.31 E-value=3.3e-13 Score=160.00 Aligned_cols=137 Identities=16% Similarity=0.209 Sum_probs=111.4
Q ss_pred eeeeEEEeCc---EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------cccc
Q 010501 40 EDTLSFEKGF---FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------SRII 108 (509)
Q Consensus 40 ~~~lsf~~g~---~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------~r~i 108 (509)
.++++|.|.. .++|+++||.+++|+ .|||+|+||||||||++.|.+++ |..|.|.+||.+.. ++.+
T Consensus 1079 f~nVsf~Y~~~~~~~VL~~isl~I~~Ge---~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i 1155 (1321)
T 4f4c_A 1079 FKNVRFAYPERPEIEILKGLSFSVEPGQ---TLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQI 1155 (1321)
T ss_dssp EEEEEECCTTSCSSCSEEEEEEEECTTC---EEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTE
T ss_pred EEEEEEeCCCCCCCccccceeEEECCCC---EEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhhe
Confidence 4788998843 469999999999999 99999999999999999999999 89999999998543 2568
Q ss_pred cccCCCCCCCchhhHHHHHHhhcc-Cc-----------------ce-ecc-ccccCCC----CcCCCeeeeecCccEEEE
Q 010501 109 DGNFDDPRLTDYDTLLENIRGLKE-GK-----------------AV-QVP-IYDFKSS----SRIGYRTLEVPSSRIVII 164 (509)
Q Consensus 109 ~~~fq~p~~~d~~tl~e~L~~L~~-g~-----------------~i-~~P-~yD~~~~----~rsgg~~~~v~~a~VLIV 164 (509)
++++|+|.+|+ .++++||..... .. .+ ..| .||...+ ..|+|++|++..+|+++-
T Consensus 1156 ~~V~Qdp~LF~-gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr 1234 (1321)
T 4f4c_A 1156 AIVSQEPTLFD-CSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVR 1234 (1321)
T ss_dssp EEECSSCCCCS-EEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHS
T ss_pred EEECCCCEeeC-ccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHh
Confidence 99999998886 489999864321 10 00 123 2444332 468899999999999999
Q ss_pred ecceeeeccccCCCCe
Q 010501 165 EGIYALSEKLRPLIDL 180 (509)
Q Consensus 165 EGi~aL~dElr~lLDl 180 (509)
++..+++||+++.+|.
T Consensus 1235 ~~~ILiLDEaTSaLD~ 1250 (1321)
T 4f4c_A 1235 NPKILLLDEATSALDT 1250 (1321)
T ss_dssp CCSEEEEESCCCSTTS
T ss_pred CCCEEEEeCccccCCH
Confidence 9999999999999997
No 63
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=99.31 E-value=1.8e-13 Score=148.65 Aligned_cols=159 Identities=12% Similarity=0.160 Sum_probs=109.5
Q ss_pred eeeEEEeCcE-EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEE---------EECCccCc-----
Q 010501 41 DTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI---------TMDNYNDS----- 104 (509)
Q Consensus 41 ~~lsf~~g~~-~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I---------~~D~y~~~----- 104 (509)
+++++.++.. .++++++ .+.+|+ ++||+||||||||||+++|++++ |+.|.+ .+++....
T Consensus 25 ~~ls~~yg~~~~~l~~vs-~i~~Ge---~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~ 100 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRLP-VVKEGM---VVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEK 100 (538)
T ss_dssp CCEEEECSTTCCEEECCC-CCCTTS---EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHH
T ss_pred cCcEEEECCccccccCcC-cCCCCC---EEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHH
Confidence 5788888875 5899999 999999 99999999999999999999998 777764 23332110
Q ss_pred ----cccccccCCCCCCCch---hhHHHHHHhhccCcc-------eec-cccccCCCCcCCCeeeeecCccEEEEeccee
Q 010501 105 ----SRIIDGNFDDPRLTDY---DTLLENIRGLKEGKA-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (509)
Q Consensus 105 ----~r~i~~~fq~p~~~d~---~tl~e~L~~L~~g~~-------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~a 169 (509)
...+++.+|....++. .++.+++........ +.. ...+...++.|+|+.+++..+++++.++.++
T Consensus 101 ~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lL 180 (538)
T 1yqt_A 101 LKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFY 180 (538)
T ss_dssp HHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCSSSCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred HHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhHHHHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 1123445554332221 144554432110000 011 2345556788999999999999999999999
Q ss_pred eeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHH
Q 010501 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (509)
Q Consensus 170 L~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~V 210 (509)
++|||++.||. .....+..+.+++.+.|.++.-+
T Consensus 181 lLDEPTs~LD~-------~~~~~l~~~L~~l~~~g~tvi~v 214 (538)
T 1yqt_A 181 FFDEPSSYLDI-------RQRLNAARAIRRLSEEGKSVLVV 214 (538)
T ss_dssp EEESTTTTCCH-------HHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEECCcccCCH-------HHHHHHHHHHHHHHhcCCEEEEE
Confidence 99999999998 45566667777776667764433
No 64
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=99.26 E-value=4.3e-13 Score=147.69 Aligned_cols=161 Identities=15% Similarity=0.175 Sum_probs=111.2
Q ss_pred eeeEEEeCcE-EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEE---------EECCccCc-----
Q 010501 41 DTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI---------TMDNYNDS----- 104 (509)
Q Consensus 41 ~~lsf~~g~~-~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I---------~~D~y~~~----- 104 (509)
+++++.++.. .++++++ .+++|+ ++||+||||||||||+++|++++ |+.|.+ .+++....
T Consensus 95 ~~ls~~yg~~~~~l~~vs-~i~~Ge---~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~ 170 (607)
T 3bk7_A 95 EDCVHRYGVNAFVLYRLP-IVKDGM---VVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFER 170 (607)
T ss_dssp GSEEEECSTTCCEEECCC-CCCTTS---EEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHH
T ss_pred CCeEEEECCCCeeeCCCC-CCCCCC---EEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhh
Confidence 6788888875 5899999 999999 99999999999999999999998 777764 23332110
Q ss_pred ----cccccccCCCCCCCc---hhhHHHHHHhhccCcc-------eec-cccccCCCCcCCCeeeeecCccEEEEeccee
Q 010501 105 ----SRIIDGNFDDPRLTD---YDTLLENIRGLKEGKA-------VQV-PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYA 169 (509)
Q Consensus 105 ----~r~i~~~fq~p~~~d---~~tl~e~L~~L~~g~~-------i~~-P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~a 169 (509)
...+++.+|.....+ ..++.+++..-..... +.. ...+...++.|+|+.+++..+++++.++.++
T Consensus 171 ~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lL 250 (607)
T 3bk7_A 171 LKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFY 250 (607)
T ss_dssp HHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCCSSCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEE
T ss_pred hhhhhcceEEeechhhhchhhccccHHHHhhhhHHHHHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 112334444432211 1255555532111000 111 2345556788999999999999999999999
Q ss_pred eeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 170 LSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 170 L~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
++|||++.||. .....+.++++++.+.|.++.-+.|
T Consensus 251 lLDEPTs~LD~-------~~~~~l~~~L~~l~~~g~tvIivsH 286 (607)
T 3bk7_A 251 FFDEPSSYLDI-------RQRLKVARVIRRLANEGKAVLVVEH 286 (607)
T ss_dssp EEECTTTTCCH-------HHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred EEECCcccCCH-------HHHHHHHHHHHHHHhcCCEEEEEec
Confidence 99999999998 4556667777777766776543333
No 65
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=99.22 E-value=2.1e-12 Score=143.10 Aligned_cols=154 Identities=11% Similarity=0.085 Sum_probs=94.8
Q ss_pred EEEeeeeceeeecCCccEEEEEECCCCCcHHHHH---------------------HHHHhhC-CC-------eeEEEECC
Q 010501 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFT---------------------EKVLNFM-PS-------IAVITMDN 100 (509)
Q Consensus 50 ~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLa---------------------r~L~~ll-p~-------~g~I~~D~ 100 (509)
..+|++|||.+++|+ ++||+||||||||||+ +.+.++. |+ .+.+.+++
T Consensus 31 ~~~L~~vsl~i~~Ge---~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~ 107 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGK---LVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQ 107 (670)
T ss_dssp STTCCSEEEEEETTS---EEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESS
T ss_pred ccceeccEEEECCCC---EEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecC
Confidence 457999999999999 9999999999999997 6666655 44 34455555
Q ss_pred ccCc---cccccccCCCCCC-------------------CchhhHHHHHHhhccC------c------------------
Q 010501 101 YNDS---SRIIDGNFDDPRL-------------------TDYDTLLENIRGLKEG------K------------------ 134 (509)
Q Consensus 101 y~~~---~r~i~~~fq~p~~-------------------~d~~tl~e~L~~L~~g------~------------------ 134 (509)
.... ...+++++|.+.. +...++.+++..+... .
T Consensus 108 ~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 187 (670)
T 3ux8_A 108 KTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQ 187 (670)
T ss_dssp CC-----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHH
T ss_pred chhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHH
Confidence 4221 1234444443322 2234455555432100 0
Q ss_pred ceecc--ccccCCCCcCCCeeeeecCccEEEEecc--eeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHH
Q 010501 135 AVQVP--IYDFKSSSRIGYRTLEVPSSRIVIIEGI--YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (509)
Q Consensus 135 ~i~~P--~yD~~~~~rsgg~~~~v~~a~VLIVEGi--~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~V 210 (509)
.+... ..+...++.|+|+.+++..+++|+.++. ++|+|||+..||. .....+..+.+++++.|.++.-|
T Consensus 188 ~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~-------~~~~~l~~~l~~l~~~g~tvi~v 260 (670)
T 3ux8_A 188 NVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ-------RDNDRLIATLKSMRDLGNTLIVV 260 (670)
T ss_dssp HTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG-------GGHHHHHHHHHHHHHTTCEEEEE
T ss_pred HcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCH-------HHHHHHHHHHHHHHHcCCEEEEE
Confidence 00001 1245567889999999999999999988 9999999999998 56777888888888788876544
Q ss_pred HHH
Q 010501 211 IHQ 213 (509)
Q Consensus 211 i~~ 213 (509)
.|.
T Consensus 261 tHd 263 (670)
T 3ux8_A 261 EHD 263 (670)
T ss_dssp CCC
T ss_pred eCC
Confidence 443
No 66
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.21 E-value=5.4e-12 Score=138.98 Aligned_cols=152 Identities=13% Similarity=0.019 Sum_probs=107.0
Q ss_pred eeEEEeCc-EEEeeeeceeeecC-----CccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCC
Q 010501 42 TLSFEKGF-FIVIRACQLLAQKN-----HGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDD 114 (509)
Q Consensus 42 ~lsf~~g~-~~iLk~IsL~i~~G-----e~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~ 114 (509)
++.|.+.. ..++++++|.+.+| + ++||+||||||||||+++|++++ |..|.. .....+++.+|+
T Consensus 351 ~~~~~y~~~~~~l~~vsl~v~~G~~~~GE---iv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~~~~i~~~~q~ 421 (608)
T 3j16_B 351 SRAFSYPSLKKTQGDFVLNVEEGEFSDSE---ILVMMGENGTGKTTLIKLLAGALKPDEGQD------IPKLNVSMKPQK 421 (608)
T ss_dssp SSCCEECCEEEECSSCEEEECCEECCTTC---EEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CCSCCEEEECSS
T ss_pred ceeEEecCcccccCceEEEEecCccccce---EEEEECCCCCcHHHHHHHHhcCCCCCCCcC------ccCCcEEEeccc
Confidence 34555543 45788999999888 7 89999999999999999999999 676642 122346677777
Q ss_pred CCCCchhhHHHHHHhhccCc------------cee-ccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeE
Q 010501 115 PRLTDYDTLLENIRGLKEGK------------AVQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLR 181 (509)
Q Consensus 115 p~~~d~~tl~e~L~~L~~g~------------~i~-~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlk 181 (509)
+......++.+++.....+. .+. ....+...+.+|+|+.+++..+++|+.++.++|+|||+..+|.
T Consensus 422 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~- 500 (608)
T 3j16_B 422 IAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDS- 500 (608)
T ss_dssp CCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCH-
T ss_pred ccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCH-
Confidence 55444445666553211110 000 1234556678999999999999999999999999999999998
Q ss_pred EEeecCchHHHHHHHHHHHH-HcCCCHHH
Q 010501 182 VSVTGGVHFDLVKRVFRDIQ-RVGQEPEE 209 (509)
Q Consensus 182 IfVd~d~dirLiRRI~RD~~-erG~t~e~ 209 (509)
.....+.++++++. +.|.++.-
T Consensus 501 ------~~~~~i~~ll~~l~~~~g~tvii 523 (608)
T 3j16_B 501 ------EQRIICSKVIRRFILHNKKTAFI 523 (608)
T ss_dssp ------HHHHHHHHHHHHHHHHHTCEEEE
T ss_pred ------HHHHHHHHHHHHHHHhCCCEEEE
Confidence 34455566666654 45766433
No 67
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.20 E-value=1.2e-12 Score=134.97 Aligned_cols=155 Identities=13% Similarity=0.132 Sum_probs=99.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCccccccccCCCCCCCchhhHHHHHHhhccCcceeccccccCCC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 146 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~ 146 (509)
.+|+|+||+|||||||++.|+..++ ...|++|++..... +...-..|..-....+..++..+..+.. ..+.++|..+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~-~~iis~Ds~qvYr~-~~i~Takp~~eE~~~v~hhl~di~~~~~-~~~~~dF~~~ 84 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN-GEIISGDSMQVYQG-MDIGTAKVTTEEMEGIPHYMIDILPPDA-SFSAYEFKKR 84 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT-EEEEECCSSTTBTT-CCTTTTCCCTTTTTTCCEESSSCBCTTS-CCCHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC-Cceecccccccccc-ccccccCCCHHHHHHHHHHHHHHhCCcc-ccCHHHHHHH
Confidence 4899999999999999999999984 67899999822110 1100001110011111112222333333 5667777655
Q ss_pred CcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEee-cCch--HHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHH
Q 010501 147 SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVT-GGVH--FDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYK 223 (509)
Q Consensus 147 ~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd-~d~d--irLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~ 223 (509)
.+..-.........+|+++|..++.+++...+| +|++ +|.+ +|+.+++.| +.++|. +++++|+..+.|++.
T Consensus 85 a~~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~r-~~~~G~---~~l~~~L~~vdP~~a 158 (340)
T 3d3q_A 85 AEKYIKDITRRGKVPIIAGGTGLYIQSLLYNYA--FEDESISEDKMKQVKLKLKE-LEHLNN---NKLHEYLASFDKESA 158 (340)
T ss_dssp HHHHHHHHHHTTCEEEEECCCHHHHHHHHBCSC--CC---CCHHHHHHHHHHHHT-TSSSCH---HHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHhCCCcEEEECChhhhHHHHHhccc--ccCCCCChHHHHHHHHHHHH-HHhcCH---HHHHHHHHhhCcHHH
Confidence 432211122245678889999876688888887 6777 7777 678888888 777885 488999999999999
Q ss_pred HhhcCCC
Q 010501 224 AFIEPDL 230 (509)
Q Consensus 224 ~fIeP~k 230 (509)
.+|.|.-
T Consensus 159 ~~I~p~d 165 (340)
T 3d3q_A 159 KDIHPNN 165 (340)
T ss_dssp HHSCTTC
T ss_pred hhcCccC
Confidence 9998843
No 68
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.15 E-value=1.1e-11 Score=142.58 Aligned_cols=130 Identities=17% Similarity=0.199 Sum_probs=94.6
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCc-cccccccCCCC-CCC
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-SRIIDGNFDDP-RLT 118 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~-~r~i~~~fq~p-~~~ 118 (509)
.++++.++...+|+++||.+.+|+ ++||+||||||||||+++|++ |.+ +++... ...+.+.+|++ ..+
T Consensus 439 ~~ls~~yg~~~iL~~vsl~I~~Ge---~v~LiGpNGsGKSTLLk~Lag-----G~i--~g~~~~~~~~~~~v~q~~~~~~ 508 (986)
T 2iw3_A 439 CEFSLAYGAKILLNKTQLRLKRAR---RYGICGPNGCGKSTLMRAIAN-----GQV--DGFPTQEECRTVYVEHDIDGTH 508 (986)
T ss_dssp EEEEEEETTEEEEEEEEEEEETTC---EEEEECSTTSSHHHHHHHHHH-----TCS--TTCCCTTTSCEEETTCCCCCCC
T ss_pred eeEEEEECCEEeEecceEEEcCCC---EEEEECCCCCCHHHHHHHHhC-----CCc--CCCccccceeEEEEcccccccc
Confidence 478888898999999999999999 999999999999999999985 111 222211 11234566554 345
Q ss_pred chhhHHHHHHhhccC---------cceec--cccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 119 DYDTLLENIRGLKEG---------KAVQV--PIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 119 d~~tl~e~L~~L~~g---------~~i~~--P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
...++.+++.....+ ..+.. ...+...+..|+|+++++..+++++.++.++|+|||++.||.
T Consensus 509 ~~ltv~e~l~~~~~~~~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~ 581 (986)
T 2iw3_A 509 SDTSVLDFVFESGVGTKEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDT 581 (986)
T ss_dssp TTSBHHHHHHTTCSSCHHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCH
T ss_pred cCCcHHHHHHHhhcCHHHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCH
Confidence 555666666431000 00111 123445578899999999999999999999999999999997
No 69
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.06 E-value=8.3e-12 Score=143.62 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=52.4
Q ss_pred eeeeEEEeCc--EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECC
Q 010501 40 EDTLSFEKGF--FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN 100 (509)
Q Consensus 40 ~~~lsf~~g~--~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~ 100 (509)
.++++|.|+. ..+|+++||.+..|+ ++||+||||||||||+++|++++ |..|.|.+++
T Consensus 674 v~nLs~~Y~g~~~~iL~dVSl~I~~Ge---ivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 674 VTNMEFQYPGTSKPQITDINFQCSLSS---RIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp EEEEEECCTTCSSCSEEEEEEEEETTC---EEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT
T ss_pred EEeeEEEeCCCCceeeeccEEEEcCCC---EEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC
Confidence 4678888854 578999999999999 99999999999999999999998 7899999874
No 70
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.02 E-value=5.1e-11 Score=114.01 Aligned_cols=169 Identities=17% Similarity=0.135 Sum_probs=83.0
Q ss_pred EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCc--------cccccccCCCCCCCchh
Q 010501 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS--------SRIIDGNFDDPRLTDYD 121 (509)
Q Consensus 50 ~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~--------~r~i~~~fq~p~~~d~~ 121 (509)
+..|++|||.+++|+ +++|+||||||||||+++|++++| |.|.+ +.... .+.++++|+++..++..
T Consensus 10 ~~~l~~isl~i~~G~---~~~lvGpsGsGKSTLl~~L~g~~p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 83 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIY---PLVICGPSGVGKGTLIKKLLNEFP--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83 (218)
T ss_dssp ------------CCC---CEEEECSTTSSHHHHHHHHHHHST--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHH
T ss_pred cccccCCceecCCCC---EEEEECCCCCCHHHHHHHHHhhCC--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHh
Confidence 346899999999999 999999999999999999999986 66776 43211 13467778776544322
Q ss_pred hHHHHHHhhccCcceeccccccCCCCcCCCe-eeeecCccEEEEecceeeeccccCCC---C-eEEEeecCchHHHHHHH
Q 010501 122 TLLENIRGLKEGKAVQVPIYDFKSSSRIGYR-TLEVPSSRIVIIEGIYALSEKLRPLI---D-LRVSVTGGVHFDLVKRV 196 (509)
Q Consensus 122 tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~-~~~v~~a~VLIVEGi~aL~dElr~lL---D-lkIfVd~d~dirLiRRI 196 (509)
+ ..+..+....|........... ...+....+++++-.+......+..+ + .++|+..+.-..+.++
T Consensus 84 ~--------~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~- 154 (218)
T 1z6g_A 84 L--------KNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSR- 154 (218)
T ss_dssp H--------HTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHH-
T ss_pred h--------hccchhhhhhcccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHH-
Confidence 1 0111111111100000000000 00112233444442111112344444 3 6788876654444333
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEcC
Q 010501 197 FRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIIN 239 (509)
Q Consensus 197 ~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n 239 (509)
+..++...++.+.++....++... +.. ...+|.||.+
T Consensus 155 ---~~~~d~~~~~~i~~~l~~~~~~~~-~~h--~~~~d~iiv~ 191 (218)
T 1z6g_A 155 ---LLTRNTENQEQIQKRMEQLNIELH-EAN--LLNFNLSIIN 191 (218)
T ss_dssp ---HHHTCCCCHHHHHHHHHHHHHHHH-HHT--TSCCSEEEEC
T ss_pred ---HHhcCCCCHHHHHHHHHHHHHHHH-hhc--ccCCCEEEEC
Confidence 446777766666666666665544 332 3668877754
No 71
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.02 E-value=4.8e-11 Score=118.80 Aligned_cols=164 Identities=12% Similarity=0.205 Sum_probs=95.1
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcc----Ccc-c-------cccccCCCC-CCCchhhHHHHH---
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN----DSS-R-------IIDGNFDDP-RLTDYDTLLENI--- 127 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~----~~~-r-------~i~~~fq~p-~~~d~~tl~e~L--- 127 (509)
.++.+|+|+|++||||||+++.|+. + +...|..|.+. ... . ..+..+.++ ..++...+...+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La~-l-g~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~vf~~ 150 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLKN-L-GAYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSRVFGN 150 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHHH-H-TCEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHTTC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-C-CCcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHHHhCC
Confidence 4578999999999999999999995 3 44567777651 110 0 111111111 233333322111
Q ss_pred -HhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCC
Q 010501 128 -RGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQE 206 (509)
Q Consensus 128 -~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t 206 (509)
..+.....+..|.+......+.. .......+++|+||.+++...+....|..|||++|.++++.|...|+ |.+
T Consensus 151 ~~~~~~l~~i~~P~i~~~~~~~~~--~~~~~~~~~vIveg~~l~~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~----g~s 224 (281)
T 2f6r_A 151 KKQMKILTDIVWPVIAKLAREEMD--VAVAKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIVERD----GLS 224 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HHHHTTCCEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHH----CCC
T ss_pred HHHHHHhhcccChHHHHHHHHHHH--HHhccCCCEEEEEechhhccchHHhCCEEEEEcCCHHHHHHHHHHcC----CCC
Confidence 01111112333432221111100 00012246899999987655666778999999999998887776664 889
Q ss_pred HHHHHHHHHHhhhhHHHHhhcCCCCceeEEEcCCC
Q 010501 207 PEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (509)
Q Consensus 207 ~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~~ 241 (509)
.+++..++... .+.. .++ ..||++|.++.
T Consensus 225 ~e~~~~ri~~q-~~~~-~~~----~~AD~vIdn~~ 253 (281)
T 2f6r_A 225 EAAAQSRLQSQ-MSGQ-QLV----EQSNVVLSTLW 253 (281)
T ss_dssp HHHHHHHHHTS-CCHH-HHH----HTCSEEEECSS
T ss_pred HHHHHHHHHHc-CChH-hhH----hhCCEEEECCC
Confidence 88888887665 4433 333 35899997653
No 72
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.01 E-value=3.7e-11 Score=132.34 Aligned_cols=164 Identities=8% Similarity=0.036 Sum_probs=104.3
Q ss_pred eeeceeee----eeeEEEeCcE-EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEE---------
Q 010501 33 RYEIVPIE----DTLSFEKGFF-IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVIT--------- 97 (509)
Q Consensus 33 ~~~~~~i~----~~lsf~~g~~-~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~--------- 97 (509)
.+++.+++ +++++.|+.. ..++.+. .+.+|+ ++||+||||||||||+++|++++ |+.|.|.
T Consensus 69 ~i~i~nl~~~~~~~~~~~Y~~~~~~l~~l~-~~~~Ge---i~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~ 144 (608)
T 3j16_B 69 AIQIINLPTNLEAHVTHRYSANSFKLHRLP-TPRPGQ---VLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEII 144 (608)
T ss_dssp CEEEEEESSSSSTTEEEECSTTSCEEECCC-CCCTTS---EEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHH
T ss_pred ceEEecCChhhcCCeEEEECCCceeecCCC-CCCCCC---EEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhh
Confidence 45666665 3578888643 4566666 578999 99999999999999999999998 7777762
Q ss_pred --ECCccCcc-------ccccc--cCCCCCCC------chhhHHHHHHh-----------hccCcceeccccccCCCCcC
Q 010501 98 --MDNYNDSS-------RIIDG--NFDDPRLT------DYDTLLENIRG-----------LKEGKAVQVPIYDFKSSSRI 149 (509)
Q Consensus 98 --~D~y~~~~-------r~i~~--~fq~p~~~------d~~tl~e~L~~-----------L~~g~~i~~P~yD~~~~~rs 149 (509)
+.+..... ..+.. .++....+ ...++.+.+.. +.+.-.+ ....+...++.|
T Consensus 145 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl-~~~~~~~~~~LS 223 (608)
T 3j16_B 145 KYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQL-ENVLKRDIEKLS 223 (608)
T ss_dssp HHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTC-TGGGGSCTTTCC
T ss_pred heecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCC-cchhCCChHHCC
Confidence 11111000 00000 01110000 00112222211 1100001 123466678899
Q ss_pred CCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHH
Q 010501 150 GYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (509)
Q Consensus 150 gg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e 208 (509)
+|+.+++..+++++.++.++++|||++.||. .....+.++.+++.+.|.++.
T Consensus 224 gGe~Qrv~iAraL~~~p~llllDEPts~LD~-------~~~~~l~~~l~~l~~~g~tvi 275 (608)
T 3j16_B 224 GGELQRFAIGMSCVQEADVYMFDEPSSYLDV-------KQRLNAAQIIRSLLAPTKYVI 275 (608)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEECTTTTCCH-------HHHHHHHHHHHGGGTTTCEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECcccCCCH-------HHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999999999999999999999998 355566777777776676643
No 73
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.00 E-value=3.1e-11 Score=112.05 Aligned_cols=162 Identities=17% Similarity=0.170 Sum_probs=80.0
Q ss_pred ceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCc-------cccccccCCCCCCCchhhHHHHHHh
Q 010501 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-------SRIIDGNFDDPRLTDYDTLLENIRG 129 (509)
Q Consensus 57 sL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~-------~r~i~~~fq~p~~~d~~tl~e~L~~ 129 (509)
|+.+.+|+ +++|+||||||||||+++|++.+| .+.+++.... ...+++.|+++..++.....+++..
T Consensus 1 s~~m~~g~---ii~l~Gp~GsGKSTl~~~L~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (205)
T 3tr0_A 1 SNAMNKAN---LFIISAPSGAGKTSLVRALVKALA---EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLE 74 (205)
T ss_dssp ----CCCC---EEEEECCTTSCHHHHHHHHHHHSS---SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEE
T ss_pred CCcCCCCc---EEEEECcCCCCHHHHHHHHHhhCC---CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEe
Confidence 35567788 999999999999999999999986 2344433211 1245677777654443332222111
Q ss_pred hccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCC--eEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 130 LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLID--LRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 130 L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLD--lkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
.. . .+....+.....-...+.....+++++.......+...++ ..||+..+....+.+|+. .||...
T Consensus 75 ~~---~----~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~----~R~~~~ 143 (205)
T 3tr0_A 75 HA---T----IYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLI----KRRQDD 143 (205)
T ss_dssp EE---E----ETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHH----TCTTSC
T ss_pred ee---e----eecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHH----HhCCCC
Confidence 00 0 0000000000000011234456777754322222222222 467887765555555554 455443
Q ss_pred HHHHHHHHHhhhhHHHHhhcCCCCceeEEEcCC
Q 010501 208 EEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (509)
Q Consensus 208 e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~ 240 (509)
++.+.+......+.. .....||++|.|+
T Consensus 144 ~~~i~~rl~~~~~~~-----~~~~~~d~vi~n~ 171 (205)
T 3tr0_A 144 TAIIEQRLALAREEM-----AHYKEFDYLVVND 171 (205)
T ss_dssp SSTHHHHHHHHHHHH-----TTGGGCSEEEECS
T ss_pred HHHHHHHHHHHHHHH-----hcccCCCEEEECC
Confidence 333444444444432 2236689888764
No 74
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.99 E-value=2.9e-10 Score=111.06 Aligned_cols=80 Identities=13% Similarity=0.128 Sum_probs=46.6
Q ss_pred ccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHc--CCCHHHHHHHHHHhhhhHHHHhhcCCCCcee-E
Q 010501 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRV--GQEPEEIIHQISETVYPMYKAFIEPDLQTAH-I 235 (509)
Q Consensus 159 a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~er--G~t~e~Vi~~y~~~V~P~~~~fIeP~k~~AD-I 235 (509)
..-+++||--+..- +.+-.|++||++++.+.|..|+... +..+ +.+.+++.+.+..+......+.+.|.+..|| +
T Consensus 145 ~~~~V~~gr~~~~~-v~~~~~~~ifl~A~~e~r~~R~~~~-l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~ 222 (252)
T 4e22_A 145 APGLIADGRDMGTI-VFPDAPVKIFLDASSQERAHRRMLQ-LQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADAL 222 (252)
T ss_dssp SSCEEEEESSCCCC-CSTTCSEEEEEECCHHHHHHHHHHH-HHHHTCCCCHHHHHHHHC------------CCCCCTTEE
T ss_pred CCCEEEEeceecee-ecCCCCEEEEEECCHHHHHHHHHHH-HHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeE
Confidence 34567777543211 2233689999999999987776543 3433 4578899898888887788888999988888 7
Q ss_pred EEcCC
Q 010501 236 KIINK 240 (509)
Q Consensus 236 II~n~ 240 (509)
+|.++
T Consensus 223 ~Idts 227 (252)
T 4e22_A 223 VLDST 227 (252)
T ss_dssp EEECS
T ss_pred EEECc
Confidence 77643
No 75
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.96 E-value=7.4e-11 Score=130.67 Aligned_cols=65 Identities=9% Similarity=0.015 Sum_probs=51.4
Q ss_pred ccCCCCcCCCeeeeecCccEEEEecc---eeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHH
Q 010501 142 DFKSSSRIGYRTLEVPSSRIVIIEGI---YALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (509)
Q Consensus 142 D~~~~~rsgg~~~~v~~a~VLIVEGi---~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~ 213 (509)
+...++.|+|+.+++..+++|+.++. ++++|||+..||. .....+..+.+++.+.|.++.-|.|.
T Consensus 538 ~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~-------~~~~~i~~~l~~l~~~g~tvi~vtHd 605 (670)
T 3ux8_A 538 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHV-------DDIARLLDVLHRLVDNGDTVLVIEHN 605 (670)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCH-------HHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCH-------HHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 44567889999999999999998864 8999999999998 45667777777777777775544443
No 76
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.96 E-value=2.6e-10 Score=107.62 Aligned_cols=80 Identities=14% Similarity=0.112 Sum_probs=47.8
Q ss_pred ccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCC--CHHHHHHHHHHhhhhHHHHhhcCCCCce-eE
Q 010501 159 SRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ--EPEEIIHQISETVYPMYKAFIEPDLQTA-HI 235 (509)
Q Consensus 159 a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~--t~e~Vi~~y~~~V~P~~~~fIeP~k~~A-DI 235 (509)
...+++||..+ ...+....|+.||++++.+++..|+. +++.++|+ +.+++.+.+..++.+.+.++++|....+ ++
T Consensus 123 ~~~~vldg~~~-~~~~~~~~d~~i~l~~~~e~~~~R~~-~~l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~ 200 (227)
T 1cke_A 123 LPGLIADGRDM-GTVVFPDAPVKIFLDASSEERAHRRM-LQLQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADAL 200 (227)
T ss_dssp TTCEEEEESSC-CCCCCTTCSEEEEEECCHHHHHHHHH-HHHHHHTCCCCHHHHHHHHC-------------CCCCTTCE
T ss_pred CCCEEEECCCc-cceEecCCCEEEEEeCCHHHHHHHHH-HHHHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEE
Confidence 46788898743 22344568999999999988766654 44557787 7888888888877778888888877654 47
Q ss_pred EEcCC
Q 010501 236 KIINK 240 (509)
Q Consensus 236 II~n~ 240 (509)
+|.++
T Consensus 201 ~Id~~ 205 (227)
T 1cke_A 201 VLDST 205 (227)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 77654
No 77
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.96 E-value=1.3e-10 Score=110.08 Aligned_cols=147 Identities=18% Similarity=0.231 Sum_probs=92.1
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCcc-----c----ccc-ccCCCCCCCchhhHHHHH----Hhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-----R----IID-GNFDDPRLTDYDTLLENI----RGL 130 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~-----r----~i~-~~fq~p~~~d~~tl~e~L----~~L 130 (509)
...+|||+|++||||||+++.|+..+ +...|..|.+.... . ..+ ..++ +..+|...+.+.+ ..+
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~l-g~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~~~~~ 88 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKY-GAHVVNVDRIGHEVLEEVKEKLVELFGGSVLE-DGKVNRKKLAGIVFESRENL 88 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHHHHHHHHHHTHHHHHHHHCGGGBS-SSSBCHHHHHHHHTTCHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhc-CCEEEECcHHHHHHHHHHHHHHHHHhChhhcC-CCCcCHHHHHHHHhCCHHHH
Confidence 34699999999999999999999886 45678888773210 0 111 1233 4455655554432 111
Q ss_pred ccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHH
Q 010501 131 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI 210 (509)
Q Consensus 131 ~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~V 210 (509)
.....+..|.+......+.. ....++++|+.+++...+...+|..|||++|.++++.|.+
T Consensus 89 ~~l~~i~hP~i~~~~~~~~~------~~~~~vv~d~pll~e~~~~~~~d~vi~v~a~~e~r~~Rli-------------- 148 (192)
T 2grj_A 89 KKLELLVHPLMKKRVQEIIN------KTSGLIVIEAALLKRMGLDQLCDHVITVVASRETILKRNR-------------- 148 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHH------TCCEEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHCS--------------
T ss_pred HHHHhhhCHHHHHHHHHHHH------HcCCEEEEEEeceeecChHHhCCEEEEEECCHHHHHHHHH--------------
Confidence 11233445554432221110 0146899999887766777889999999999998776551
Q ss_pred HHHHHHhhhhHHHHhhcCCCCceeEEEcCCC
Q 010501 211 IHQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (509)
Q Consensus 211 i~~y~~~V~P~~~~fIeP~k~~ADIII~n~~ 241 (509)
-.|+ ..|+++.+..||++|+|+.
T Consensus 149 ~~q~--------~~~~~~~~~~AD~vI~n~~ 171 (192)
T 2grj_A 149 EADR--------RLKFQEDIVPQGIVVANNS 171 (192)
T ss_dssp SHHH--------HHTTCTTCCCCSEEEECSS
T ss_pred HhcC--------CchhhhHHhcCCEEEECCC
Confidence 1222 1245677899999998764
No 78
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.88 E-value=3e-11 Score=111.22 Aligned_cols=83 Identities=19% Similarity=0.080 Sum_probs=65.0
Q ss_pred eEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCccc--cccccCCCCCCCch
Q 010501 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSR--IIDGNFDDPRLTDY 120 (509)
Q Consensus 43 lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~r--~i~~~fq~p~~~d~ 120 (509)
+++.++...+++++||.+++|+ +++|.||||||||||+++|++.+|..|.|.++++..... ...+++|++..+ .
T Consensus 13 ~~~~~g~~~~l~~vsl~i~~Ge---~v~L~G~nGaGKTTLlr~l~g~l~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~-~ 88 (158)
T 1htw_A 13 SMLRFGKKFAEILLKLHTEKAI---MVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTYTLVEEYNIAGKMIYHFDLY-R 88 (158)
T ss_dssp HHHHHHHHHHHHHHHHCCSSCE---EEEEECSTTSSHHHHHHHHHHHTTCCSCCCCCTTTCEEEEEETTEEEEEEECT-T
T ss_pred HHHHHHHHHHHhccccccCCCC---EEEEECCCCCCHHHHHHHHHHhCCCCCeEEECCEeeeeeccCCCcceeccccc-c
Confidence 4444555678999999999999 999999999999999999999998889999998854321 123577887776 5
Q ss_pred hhHHHHHHh
Q 010501 121 DTLLENIRG 129 (509)
Q Consensus 121 ~tl~e~L~~ 129 (509)
.++.+++..
T Consensus 89 ltv~e~l~~ 97 (158)
T 1htw_A 89 LADPEELEF 97 (158)
T ss_dssp CSCTTHHHH
T ss_pred CCcHHHHHH
Confidence 666666644
No 79
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.88 E-value=1.2e-10 Score=126.64 Aligned_cols=136 Identities=13% Similarity=0.130 Sum_probs=87.4
Q ss_pred ecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEE-----------EECCccCc---------cc----cccccCCCC
Q 010501 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVI-----------TMDNYNDS---------SR----IIDGNFDDP 115 (509)
Q Consensus 61 ~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I-----------~~D~y~~~---------~r----~i~~~fq~p 115 (509)
++|+ ++||+||||||||||+++|++++ |+.|.+ .+++.... .. ...+..+.+
T Consensus 23 ~~Ge---i~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (538)
T 3ozx_A 23 KNNT---ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYAS 99 (538)
T ss_dssp CTTE---EEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGG
T ss_pred CCCC---EEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhh
Confidence 5788 99999999999999999999998 777876 23332110 00 111222222
Q ss_pred CCCchhhHHHHHHhhccCc-------cee-ccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecC
Q 010501 116 RLTDYDTLLENIRGLKEGK-------AVQ-VPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGG 187 (509)
Q Consensus 116 ~~~d~~tl~e~L~~L~~g~-------~i~-~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d 187 (509)
..+. .++.+.+....... .+. ....+....+.|+|+.+++..+++++.++.++++|||++.||.
T Consensus 100 ~~~~-~~v~~~l~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~------- 171 (538)
T 3ozx_A 100 KFLK-GTVNEILTKIDERGKKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDV------- 171 (538)
T ss_dssp TTCC-SBHHHHHHHHCCSSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCH-------
T ss_pred hhcc-CcHHHHhhcchhHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCH-------
Confidence 1111 13333332111100 000 1234556678899999999999999999999999999999998
Q ss_pred chHHHHHHHHHHHHHcCCCHH
Q 010501 188 VHFDLVKRVFRDIQRVGQEPE 208 (509)
Q Consensus 188 ~dirLiRRI~RD~~erG~t~e 208 (509)
.....+.++++++.+ |.++.
T Consensus 172 ~~~~~l~~~l~~l~~-g~tii 191 (538)
T 3ozx_A 172 RERMNMAKAIRELLK-NKYVI 191 (538)
T ss_dssp HHHHHHHHHHHHHCT-TSEEE
T ss_pred HHHHHHHHHHHHHhC-CCEEE
Confidence 345556666676654 66643
No 80
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.87 E-value=6.9e-11 Score=108.73 Aligned_cols=110 Identities=18% Similarity=0.151 Sum_probs=68.6
Q ss_pred eeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCccccccccCCCCCCCch-hhHHHHHHh----
Q 010501 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDY-DTLLENIRG---- 129 (509)
Q Consensus 55 ~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~r~i~~~fq~p~~~d~-~tl~e~L~~---- 129 (509)
++||.+++|+ +++|+||||||||||++++.. ....+..|. ..++.++++..... ....+.+..
T Consensus 1 ~vsl~i~~ge---i~~l~G~nGsGKSTl~~~~~~---~~~~~~~d~------~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 68 (171)
T 4gp7_A 1 SMKLTIPELS---LVVLIGSSGSGKSTFAKKHFK---PTEVISSDF------CRGLMSDDENDQTVTGAAFDVLHYIVSK 68 (171)
T ss_dssp CEEEEEESSE---EEEEECCTTSCHHHHHHHHSC---GGGEEEHHH------HHHHHCSSTTCGGGHHHHHHHHHHHHHH
T ss_pred CccccCCCCE---EEEEECCCCCCHHHHHHHHcc---CCeEEccHH------HHHHhcCcccchhhHHHHHHHHHHHHHH
Confidence 5788999999 999999999999999997432 222222221 12344555432211 111222211
Q ss_pred -hccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 130 -LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 130 -L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
+..+... ..+. ....++++.+++..++.+..++.+++.|||.+.+|.
T Consensus 69 ~~~~g~~~---~~~~-~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~ 116 (171)
T 4gp7_A 69 RLQLGKLT---VVDA-TNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQE 116 (171)
T ss_dssp HHHTTCCE---EEES-CCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHH
T ss_pred HHhCCCeE---EEEC-CCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHH
Confidence 1222211 1121 233366788889999999999999999999998886
No 81
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.80 E-value=3.9e-10 Score=112.08 Aligned_cols=111 Identities=12% Similarity=0.038 Sum_probs=62.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc----cccccccCCCCCCCchhhHHHHHHhhccC--cce---
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS----SRIIDGNFDDPRLTDYDTLLENIRGLKEG--KAV--- 136 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~----~r~i~~~fq~p~~~d~~tl~e~L~~L~~g--~~i--- 136 (509)
+.++|+||||||||||+++|++.. |..|.+.+++.... .+.+++++|++..+...++.+++...... ...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 479999999999999999999987 78899988876432 23567888887766665655554332110 000
Q ss_pred -----eccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 137 -----QVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 137 -----~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
.....+......|+|+.+++..+++++. +.+.|++...+|.
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~ 128 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRP 128 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCH
Confidence 0001112234578889999999998875 6667888888875
No 82
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.78 E-value=2.4e-10 Score=109.60 Aligned_cols=116 Identities=12% Similarity=0.060 Sum_probs=69.4
Q ss_pred cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc----cCccccccccCCCCC-CC-chh-
Q 010501 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY----NDSSRIIDGNFDDPR-LT-DYD- 121 (509)
Q Consensus 49 ~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y----~~~~r~i~~~fq~p~-~~-d~~- 121 (509)
...+|+++ ++|+ +++|+||||||||||+++|+++-|..|.|..... ....+.+++++|++. .+ .+.
T Consensus 12 ~~~~l~~i----~~Ge---~~~liG~nGsGKSTLl~~l~Gl~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~~~~ 84 (208)
T 3b85_A 12 QKHYVDAI----DTNT---IVFGLGPAGSGKTYLAMAKAVQALQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDPYLR 84 (208)
T ss_dssp HHHHHHHH----HHCS---EEEEECCTTSSTTHHHHHHHHHHHHTTSCSEEEEEECSCCTTCCCCSSCC------CTTTH
T ss_pred HHHHHHhc----cCCC---EEEEECCCCCCHHHHHHHHhcCCCcCCeeeeEEecCCchhhhcceEEecCCHHHHHHHHHH
Confidence 34466665 7899 9999999999999999999998324454422111 112345889998861 01 110
Q ss_pred hHHHHHHhhccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCC
Q 010501 122 TLLENIRGLKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPL 177 (509)
Q Consensus 122 tl~e~L~~L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~l 177 (509)
.+...+........+. ...+. ..|+.+++..+++++.++.++++|||.+.
T Consensus 85 ~~~~~~~~~~~~~~~~-~~l~~-----glGq~qrv~lAraL~~~p~lllLDEPts~ 134 (208)
T 3b85_A 85 PLHDALRDMVEPEVIP-KLMEA-----GIVEVAPLAYMRGRTLNDAFVILDEAQNT 134 (208)
T ss_dssp HHHHHHTTTSCTTHHH-HHHHT-----TSEEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred HHHHHHHHhccHHHHH-HHHHh-----CCchHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 1111111100000000 00011 12799999999999999999999999987
No 83
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.78 E-value=9.6e-11 Score=125.06 Aligned_cols=121 Identities=11% Similarity=0.002 Sum_probs=88.2
Q ss_pred eeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCee-E-EEECCccCccccccccCCCCCCCc---hhhHHHHHH
Q 010501 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-V-ITMDNYNDSSRIIDGNFDDPRLTD---YDTLLENIR 128 (509)
Q Consensus 55 ~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g-~-I~~D~y~~~~r~i~~~fq~p~~~d---~~tl~e~L~ 128 (509)
++++.+++|+ +++|+||||||||||+++|++++ |..| . |.+|+ ...+.+++++|++.++. ..++.+++
T Consensus 130 ~vsl~i~~Ge---~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg--~~~~~i~~vpq~~~l~~~~~~~tv~eni- 203 (460)
T 2npi_A 130 KIRMSNFEGP---RVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL--DPQQPIFTVPGCISATPISDILDAQLPT- 203 (460)
T ss_dssp HHHHHSSSCC---CEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC--CTTSCSSSCSSCCEEEECCSCCCTTCTT-
T ss_pred cCceEeCCCC---EEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC--CccCCeeeeccchhhcccccccchhhhh-
Confidence 7899999999 99999999999999999999998 6788 7 88887 23456788888874332 23455444
Q ss_pred hhcc---Cc---ceecc---ccccC----CCCcCCCeeeeecCccE--EEEecce----eeecc-ccCCCCeE
Q 010501 129 GLKE---GK---AVQVP---IYDFK----SSSRIGYRTLEVPSSRI--VIIEGIY----ALSEK-LRPLIDLR 181 (509)
Q Consensus 129 ~L~~---g~---~i~~P---~yD~~----~~~rsgg~~~~v~~a~V--LIVEGi~----aL~dE-lr~lLDlk 181 (509)
.... +. ....+ .+... ....++|+.+++..++. ++.++.+ ++.|| +...+|..
T Consensus 204 ~~~~~~~~~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~ 276 (460)
T 2npi_A 204 WGQSLTSGATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN 276 (460)
T ss_dssp CSCBCBSSCCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS
T ss_pred cccccccCcchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh
Confidence 2111 10 00001 11111 34567889999999999 9999999 99999 99999984
No 84
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.77 E-value=4.9e-11 Score=114.63 Aligned_cols=165 Identities=12% Similarity=0.093 Sum_probs=92.2
Q ss_pred eecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCcc-----------------ccccccCCCCCCCchhh
Q 010501 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-----------------RIIDGNFDDPRLTDYDT 122 (509)
Q Consensus 60 i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~-----------------r~i~~~fq~p~~~d~~t 122 (509)
.++|. +|+|.|++||||||+++.|++. .|.+.+.+..... +.+++.+|.+..+. .
T Consensus 17 ~~~g~---~i~i~G~~GsGKSTl~~~L~~~---~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~--~ 88 (230)
T 2vp4_A 17 GTQPF---TVLIEGNIGSGKTTYLNHFEKY---KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT--M 88 (230)
T ss_dssp TCCCE---EEEEECSTTSCHHHHHHTTGGG---TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH--H
T ss_pred CCCce---EEEEECCCCCCHHHHHHHHHhc---cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH--H
Confidence 35566 9999999999999999999987 3434444332110 01122222211100 1
Q ss_pred HHHHHHh-----hccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeec-cccCCCCeEEEeecCchHHHHHHH
Q 010501 123 LLENIRG-----LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSE-KLRPLIDLRVSVTGGVHFDLVKRV 196 (509)
Q Consensus 123 l~e~L~~-----L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~d-Elr~lLDlkIfVd~d~dirLiRRI 196 (509)
+.+++.. +..+..+..++|.++.....++ .+.+..+.++++++.+.. ......|+.||+++|.++++.|-.
T Consensus 89 ~~~~~~~~i~~~l~~~r~v~~dry~~s~~ayq~~---~l~~~~~~~~~~~~~~~~~~~~~~pD~vi~Ld~~~e~~~~Ri~ 165 (230)
T 2vp4_A 89 LQSHTAPTNKKLKIMERSIFSARYCFVENMRRNG---SLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEVAYERIR 165 (230)
T ss_dssp HHHHHCCCCSSEEEEESCHHHHHHTHHHHHHHHT---SSCHHHHHHHHHHHHHHHHHBCCCCSEEEEEECCHHHHHHHHH
T ss_pred HHHHHhccccCceeecCCccccHHHHHHHHHHcC---CCChHHHHHHHHHHHHHHHhhcCCCCEEEEEeCCHHHHHHHHH
Confidence 1111111 1123344445666654433221 244455666777766543 355678999999999988765532
Q ss_pred HHHHHHcCCCHHHH-HHHHHHhhhhHHHHhhcCC--CCcee-EEEcCC
Q 010501 197 FRDIQRVGQEPEEI-IHQISETVYPMYKAFIEPD--LQTAH-IKIINK 240 (509)
Q Consensus 197 ~RD~~erG~t~e~V-i~~y~~~V~P~~~~fIeP~--k~~AD-III~n~ 240 (509)
.||++.+.. -..|.+.++..|..+.... ...++ ++|+++
T Consensus 166 -----~R~r~~e~~~~~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~ 208 (230)
T 2vp4_A 166 -----QRARSEESCVPLKYLQELHELHEDWLIHQRRPQSCKVLVLDAD 208 (230)
T ss_dssp -----HHCCGGGTTCCHHHHHHHHHHHHHHHTSCCSSCCCEEEEEECC
T ss_pred -----HcCCcccccCcHHHHHHHHHHHHHHHHHhcccCCCCEEEEECC
Confidence 346654431 1257788889999887432 33454 666543
No 85
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.76 E-value=2.9e-09 Score=99.49 Aligned_cols=72 Identities=19% Similarity=0.131 Sum_probs=46.7
Q ss_pred cEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEcC
Q 010501 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIIN 239 (509)
Q Consensus 160 ~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n 239 (509)
..+|+|+.++....+...+|..||++++.++++.|...|+ |.+.+++.+.+... .+.... ...||++|.|
T Consensus 106 ~~vv~~~~~l~e~~~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~e~~~~r~~~q-~~~~~~-----~~~ad~vIdn 175 (206)
T 1jjv_A 106 PYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRD----NNNFEQIQRIMNSQ-VSQQER-----LKWADDVINN 175 (206)
T ss_dssp SEEEEECTTTTTTTCGGGCSEEEEEECCHHHHHHHHC---------CHHHHHHHHHHS-CCHHHH-----HHHCSEEEEC
T ss_pred CEEEEEechhhhcCcHhhCCEEEEEECCHHHHHHHHHHcC----CCCHHHHHHHHHhc-CChHHH-----HHhCCEEEEC
Confidence 4788898665443466778999999999998877666664 67888877776542 233222 2468999976
Q ss_pred CC
Q 010501 240 KF 241 (509)
Q Consensus 240 ~~ 241 (509)
+.
T Consensus 176 ~~ 177 (206)
T 1jjv_A 176 DA 177 (206)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 86
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.74 E-value=8.2e-10 Score=112.18 Aligned_cols=113 Identities=12% Similarity=0.081 Sum_probs=74.7
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCcc--------ccccccC
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS--------RIIDGNF 112 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~--------r~i~~~f 112 (509)
++++|.++ ..+|+++++.+++|+ +++|+||||||||||+++|++++ .|.|......... ..+.+..
T Consensus 105 ~~vs~~y~-~~vL~~vsl~i~~Ge---~vaIvGpsGsGKSTLl~lL~gl~--~G~I~~~v~q~~~lf~~ti~~~ni~~~~ 178 (305)
T 2v9p_A 105 QNIELITF-INALKLWLKGIPKKN---CLAFIGPPNTGKSMLCNSLIHFL--GGSVLSFANHKSHFWLASLADTRAALVD 178 (305)
T ss_dssp TTCCHHHH-HHHHHHHHHTCTTCS---EEEEECSSSSSHHHHHHHHHHHH--TCEEECGGGTTSGGGGGGGTTCSCEEEE
T ss_pred EEEEEEcC-hhhhccceEEecCCC---EEEEECCCCCcHHHHHHHHhhhc--CceEEEEecCccccccccHHHHhhccCc
Confidence 46666665 568999999999999 99999999999999999999998 6777532211100 0111110
Q ss_pred CCCCCCchhhHHHHHHh-hccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 113 DDPRLTDYDTLLENIRG-LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 113 q~p~~~d~~tl~e~L~~-L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
.. ...+.+.+.. +.. .+| ....|+|++++ +++++-++.+++ +..+|.
T Consensus 179 ---~~--~~~~~~~i~~~L~~-------gld--g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~ 226 (305)
T 2v9p_A 179 ---DA--THACWRYFDTYLRN-------ALD--GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDV 226 (305)
T ss_dssp ---EE--CHHHHHHHHHTTTG-------GGG--TCCEECCCSSC---CCCEECCCCEEE----EESSCS
T ss_pred ---cc--cHHHHHHHHHHhHc-------cCC--ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCH
Confidence 00 0123333333 211 233 45688898888 889999998888 566665
No 87
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.70 E-value=1.6e-09 Score=100.37 Aligned_cols=33 Identities=27% Similarity=0.422 Sum_probs=27.8
Q ss_pred eeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCee
Q 010501 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA 94 (509)
Q Consensus 59 ~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g 94 (509)
.+.+|. +|+|+|||||||||+++.|++.+ |..+
T Consensus 2 ~i~~g~---~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 2 DNEKGL---LIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp --CCCC---EEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCC---EEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 456788 99999999999999999999998 6544
No 88
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.69 E-value=8.2e-09 Score=99.15 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=58.6
Q ss_pred CccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCC--CHHHHHHHHHHhhhhHHHHhhcCCCCcee-
Q 010501 158 SSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ--EPEEIIHQISETVYPMYKAFIEPDLQTAH- 234 (509)
Q Consensus 158 ~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~--t~e~Vi~~y~~~V~P~~~~fIeP~k~~AD- 234 (509)
....+++||..+.. .+....|+.||++++.++++.|++.+. ..||. +.+++.+.+..+.++.+.+++.|....+|
T Consensus 134 ~~~~~v~~g~~~~~-~~l~~~d~vi~L~a~~e~~~~R~~~~~-~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~ 211 (236)
T 1q3t_A 134 QQGGIVMDGRDIGT-VVLPQAELKIFLVASVDERAERRYKEN-IAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDA 211 (236)
T ss_dssp TTSCEEEECSSCSS-SSGGGCSEEEEEECCHHHHHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTC
T ss_pred ccCCEEEECCcchh-hhccCCCEEEEEECCHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCE
Confidence 34567778874421 233456999999999999877666653 45664 78888888887778887778888877776
Q ss_pred EEEcCC
Q 010501 235 IKIINK 240 (509)
Q Consensus 235 III~n~ 240 (509)
++|.++
T Consensus 212 ~vId~~ 217 (236)
T 1q3t_A 212 VYLDTT 217 (236)
T ss_dssp EEEECS
T ss_pred EEEcCC
Confidence 888654
No 89
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.69 E-value=4.6e-09 Score=97.33 Aligned_cols=157 Identities=20% Similarity=0.231 Sum_probs=57.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc-cCcc-c---cccccCCCCCCCchhhHHHHHHhhccCcceeccccc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY-NDSS-R---IIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD 142 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y-~~~~-r---~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD 142 (509)
+++|+||||||||||+++|++.++.......... .... . ..++.|+. ...+...+. .+.......+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~~g~~~~~~~-----~~~~~~~~~---~~~~~e~~~~~ 74 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVS-----VDEFKSMIK---NNEFIEWAQFS 74 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCCBTTTBEECC-----HHHHHHHHH---TTCEEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCccCCeeeeecC-----HHHHHHHHh---hcceeeEEEEe
Confidence 8999999999999999999999852211111111 1111 1 12223322 222222221 12222211111
Q ss_pred cCC-CCcCCCeeeeecCccEEEEe----cceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 010501 143 FKS-SSRIGYRTLEVPSSRIVIIE----GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISET 217 (509)
Q Consensus 143 ~~~-~~rsgg~~~~v~~a~VLIVE----Gi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~ 217 (509)
... +.....-...+.....+++| |.-.+.. ....--..||+.+|....+.+|+. .||...++.+.+....
T Consensus 75 ~~~yg~~~~~i~~~l~~g~~~il~~~~~g~~~l~~-~~~~~~~~i~i~~p~~~~l~~Rl~----~Rg~~~~~~i~~rl~~ 149 (186)
T 3a00_A 75 GNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKA-IPELNARFLFIAPPSVEDLKKRLE----GRGTETEESINKRLSA 149 (186)
T ss_dssp TEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHT-CGGGCCEEEEEECSCC----------------------------
T ss_pred ceeccCcHHHHHHHHHcCCeEEEEEcHHHHHHHHH-hcCCCeEEEEEECcCHHHHHHHHH----hcCCCCHHHHHHHHHH
Confidence 000 00000000113345567773 4333322 011123568999977555666654 5777777777765555
Q ss_pred hhhHHHHhhcCCCCceeEEEcCC
Q 010501 218 VYPMYKAFIEPDLQTAHIKIINK 240 (509)
Q Consensus 218 V~P~~~~fIeP~k~~ADIII~n~ 240 (509)
.+... .+.. ...+|.+|.|+
T Consensus 150 ~~~~~-~~~~--~~~~d~vi~nd 169 (186)
T 3a00_A 150 AQAEL-AYAE--TGAHDKVIVND 169 (186)
T ss_dssp ------------CCCCSEEEECS
T ss_pred HHHHH-Hhhc--ccCCcEEEECc
Confidence 44322 2222 45688888764
No 90
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.68 E-value=6.7e-10 Score=106.13 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=23.0
Q ss_pred EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHH-hhCCC
Q 010501 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVL-NFMPS 92 (509)
Q Consensus 51 ~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~-~llp~ 92 (509)
...+++||.+++|+ +++|+||||||||||+++|+ +.++.
T Consensus 15 ~~~~~~sl~v~~G~---ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 15 QTQGPGSMLKSVGV---ILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp -------CCEECCC---EEEEECSCC----CHHHHHHC----C
T ss_pred cccCCCCcccCCCC---EEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 35678999999999 99999999999999999999 88753
No 91
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.66 E-value=3.2e-09 Score=98.87 Aligned_cols=70 Identities=14% Similarity=0.121 Sum_probs=47.2
Q ss_pred cEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCceeEEEcC
Q 010501 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIIN 239 (509)
Q Consensus 160 ~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n 239 (509)
.++|+||.+++........|..||++++.+++..|... ||.+.+++...+... .+.. +....||++|.+
T Consensus 106 ~~vive~~~l~~~~~~~~~~~~i~l~~~~e~~~~Rl~~-----R~~~~~~~~~~~~~~-~~~~-----~~~~~ad~vId~ 174 (204)
T 2if2_A 106 TLFILEASLLVEKGTYKNYDKLIVVYAPYEVCKERAIK-----RGMSEEDFERRWKKQ-MPIE-----EKVKYADYVIDN 174 (204)
T ss_dssp CCEEEECSCSTTTTCGGGSSEEEEECCCHHHHHHHHHH-----TCCCHHHHHHHHTTS-CCHH-----HHGGGCSEECCC
T ss_pred CEEEEEccccccCCchhhCCEEEEEECCHHHHHHHHHH-----cCCCHHHHHHHHHhC-CChh-----HHHhcCCEEEEC
Confidence 68899998766555666789999999998876554443 378877766666443 3321 123467888865
Q ss_pred C
Q 010501 240 K 240 (509)
Q Consensus 240 ~ 240 (509)
+
T Consensus 175 ~ 175 (204)
T 2if2_A 175 S 175 (204)
T ss_dssp S
T ss_pred C
Confidence 4
No 92
>1yem_A Hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI; 2.30A {Pyrococcus furiosus} SCOP: d.63.1.2
Probab=98.66 E-value=5.8e-08 Score=91.28 Aligned_cols=141 Identities=23% Similarity=0.376 Sum_probs=110.8
Q ss_pred cHHHHHHHhcccccc--cccceeeEEEeCCCCCccccccceeee--ccCceEEEEeeecccCCCeEeccccceeecee--
Q 010501 261 TVDEIKAVMSKEHTE--TTEETYDIYLLPPGEDPDACQSYLRMR--NRDGKYNLMFEEWVTDSPFIISPRITFEVSVR-- 334 (509)
Q Consensus 261 ~~~~i~~~l~~~~~~--~~~~~~diyl~pp~~~~~~~~~~ir~r--~~~~~~~l~~~~~i~~~~f~~~P~~~f~v~~~-- 334 (509)
..+.+...|...... ......|.|+..|+. .|||.| +.++++.|.+..+- +++...+.-++++|.-.
T Consensus 18 d~~~~~~~L~~lg~~~~~~~~Q~d~Yfd~p~~------~~LRIR~~~~~~~~~lT~K~p~-~g~~k~~~E~e~~v~d~~~ 90 (179)
T 1yem_A 18 KLEDFLHTLNTFNPEFVRYEEQEDVYFEVPRP------KLLRIRGVHNLKKYYLTFKEIL-DENNEEFYEVEFEIGDFEK 90 (179)
T ss_dssp CHHHHHHHHHTTCCEEEEEEEEEEEEECCCTT------EEEEEEEETTTTEEEEEEEEEC-SSSSCEEEEEEEEESCHHH
T ss_pred CHHHHHHHHHhcCCccCcceEEEEEEEcCCCC------CEEEEEEEcCCCeEEEEEeccC-CCCccceeEEEEEeCCHHH
Confidence 456777777664322 222355999988755 799999 67999999998887 88876666655555321
Q ss_pred ecccccccCceEEEEEEeccceeecCcEEEEehhhhhcCcceEEEeccC------hhHHHHHHhhhcCccC-ccchhHHH
Q 010501 335 LLGGLMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGRD------RLYVKYVGEQLGLDGS-YVPRTYIE 407 (509)
Q Consensus 335 ~~~gl~~lgy~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~v~~~~~~l~~~~~-~~~~~y~~ 407 (509)
...-|..|||.+...+...-..|.-+.+.|.+|+.+.++ .|+.|.... ++.+.+++.+|||+.. .+++||+|
T Consensus 91 ~~~iL~~LG~~~~~~i~K~R~~~~~~~~~i~lD~~~~lG-~f~EIE~~~~~~e~~~~~~~~ll~~LGi~~~~~~~~sY~e 169 (179)
T 1yem_A 91 AVEVFKRLGFKIQATIKKKRWVYKLNGVTLEVNRVEGIG-DFVDIEVISDSPEEAKEKIWEVAKMLGLKEEDVEPRLYLE 169 (179)
T ss_dssp HHHHHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEECSCHHHHHHHHHHHHHHTTCCGGGBCCSCTTT
T ss_pred HHHHHHHCCCcEEEEEEEEEEEEEECCEEEEEEecCCCC-CEEEEEEecCChHHHHHHHHHHHHHcCCChhhceehhHHH
Confidence 111245789999999999999999999999999999999 899998766 7889999999999988 99999998
Q ss_pred HH
Q 010501 408 QI 409 (509)
Q Consensus 408 ~~ 409 (509)
++
T Consensus 170 Ll 171 (179)
T 1yem_A 170 LI 171 (179)
T ss_dssp TC
T ss_pred HH
Confidence 77
No 93
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.64 E-value=1.3e-07 Score=92.56 Aligned_cols=78 Identities=10% Similarity=0.067 Sum_probs=56.7
Q ss_pred cEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHH--cCCCHHHHHHHHHHhhhhHHHHhhcCCCCcee-EE
Q 010501 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQR--VGQEPEEIIHQISETVYPMYKAFIEPDLQTAH-IK 236 (509)
Q Consensus 160 ~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~e--rG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~AD-II 236 (509)
.-+|+||--+-. .+.+-.+++||++++.+.|..||..+ +.+ .+.+.+++......+......+++.|.+..+| ++
T Consensus 129 ~~~V~~GRd~gt-~V~pda~lkifl~A~~e~Ra~Rr~~~-l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~ 206 (233)
T 3r20_A 129 GRVVVEGRDIGT-VVLPDADVKIFLTASAEERARRRNAQ-NVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALV 206 (233)
T ss_dssp SCEEEEESSCCC-CCCTTCSEEEEEECCHHHHHHHHHHH-HHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEE
T ss_pred CcEEEeccccee-EEcCCCCEEEEEECCHHHHHHHHHHH-HHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEE
Confidence 567778863211 11122579999999999887666644 333 35688999999999998888889999988887 77
Q ss_pred EcC
Q 010501 237 IIN 239 (509)
Q Consensus 237 I~n 239 (509)
|..
T Consensus 207 IDT 209 (233)
T 3r20_A 207 VDT 209 (233)
T ss_dssp EEC
T ss_pred EEC
Confidence 753
No 94
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.60 E-value=6.4e-09 Score=100.31 Aligned_cols=58 Identities=19% Similarity=0.192 Sum_probs=41.4
Q ss_pred eeecCCccEEEEEECCCCCcHHHHHHHHHhhCC---CeeEEEECCccCcc---ccccccCCCCCCCc
Q 010501 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP---SIAVITMDNYNDSS---RIIDGNFDDPRLTD 119 (509)
Q Consensus 59 ~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp---~~g~I~~D~y~~~~---r~i~~~fq~p~~~d 119 (509)
..++|+ +++|+||||||||||+++|++.++ ..|.|.+.+..... ..++|.|+++..|+
T Consensus 12 ~~~~G~---ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~ 75 (219)
T 1s96_A 12 HMAQGT---LYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFK 75 (219)
T ss_dssp ---CCC---EEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHH
T ss_pred cCCCCc---EEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHH
Confidence 457889 999999999999999999999985 35667666543221 34677888765433
No 95
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.59 E-value=1.8e-08 Score=93.24 Aligned_cols=72 Identities=11% Similarity=0.003 Sum_probs=46.5
Q ss_pred cEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhcCCCCcee-EEEc
Q 010501 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPMYKAFIEPDLQTAH-IKII 238 (509)
Q Consensus 160 ~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~~~~fIeP~k~~AD-III~ 238 (509)
..+|+||..+. ..+.+..|++||+++|.+++..|...| .+.+.+++.+.+..+.......+ ...|| ++|.
T Consensus 119 ~~~vi~g~~~~-~~~~~~~d~~i~l~a~~e~~~~R~~~r----~~~~~~~~~~~~~~R~~~~~~~~----~~~ad~~~Id 189 (208)
T 3ake_A 119 PPFVAEGRDMG-TAVFPEAAHKFYLTASPEVRAWRRARE----RPQAYEEVLRDLLRRDERDKAQS----APAPDALVLD 189 (208)
T ss_dssp SCEEEEESSCC-CCCCTTCSEEEEEECCHHHHHHHHHHT----SSSCHHHHHHHHHHHHHTC--CC----CCCTTCEEEE
T ss_pred CCEEEEcccee-EEEecCCcEEEEEECCHHHHHHHHHhh----cccCHHHHHHHHHHHHHHHhhcc----cCCCCEEEEE
Confidence 57889998766 345566899999999998877665544 24566776666654322211111 45677 8886
Q ss_pred CC
Q 010501 239 NK 240 (509)
Q Consensus 239 n~ 240 (509)
++
T Consensus 190 ~~ 191 (208)
T 3ake_A 190 TG 191 (208)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 96
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.55 E-value=1.2e-07 Score=89.05 Aligned_cols=79 Identities=16% Similarity=0.134 Sum_probs=54.7
Q ss_pred cEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCC--CHHHHHHHHHHhhhhHHHHhhcCCCCcee-EE
Q 010501 160 RIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQ--EPEEIIHQISETVYPMYKAFIEPDLQTAH-IK 236 (509)
Q Consensus 160 ~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~--t~e~Vi~~y~~~V~P~~~~fIeP~k~~AD-II 236 (509)
..++++|..+ ...+....|+.||++++.+++..|++.+ ...||. +.+++...+..+..+...+.+.|....|| ++
T Consensus 119 ~~~vi~g~~~-~~~~~~~~~~vi~l~a~~e~~~~R~~~~-~~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~ 196 (219)
T 2h92_A 119 KGIVMDGRDI-GTVVLPDADLKVYMIASVEERAERRYKD-NQLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVT 196 (219)
T ss_dssp CCEEEEESSC-CCCCCTTCSEEEEEECCHHHHHHHHHHH-HHHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEE
T ss_pred CcEEEEcCCc-cceecCCCCEEEEEECCHHHHHHHHHHH-HHhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEE
Confidence 3567777532 1234455689999999998876665544 456787 78888888876666777667777766677 88
Q ss_pred EcCC
Q 010501 237 IINK 240 (509)
Q Consensus 237 I~n~ 240 (509)
|.++
T Consensus 197 Id~~ 200 (219)
T 2h92_A 197 LDTT 200 (219)
T ss_dssp EECT
T ss_pred EECC
Confidence 8654
No 97
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.53 E-value=9.2e-09 Score=96.14 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=30.3
Q ss_pred cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 49 ~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
...++++++|.+.++. +|+|+|++||||||+++.|++.+ ....+..|++
T Consensus 11 ~~~~~~~~~~~~~~~~---~i~l~G~~GsGKsTl~~~La~~l-~~~~i~~d~~ 59 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMV---RIFLTGYMGAGKTTLGKAFARKL-NVPFIDLDWY 59 (199)
T ss_dssp -------------CCC---EEEEECCTTSCHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred CCCCCCceeEecCCCC---EEEEEcCCCCCHHHHHHHHHHHc-CCCEEcchHH
Confidence 4567999999999999 99999999999999999999987 3345666654
No 98
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.53 E-value=7.4e-08 Score=90.81 Aligned_cols=159 Identities=17% Similarity=0.125 Sum_probs=81.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCc-----c-------ccccc-cCCCCCCCchhhHHHHHHh---
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-----S-------RIIDG-NFDDPRLTDYDTLLENIRG--- 129 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~-----~-------r~i~~-~fq~p~~~d~~tl~e~L~~--- 129 (509)
+.+|+|.|++||||||+++.|++ + ....+..|.+... . ...+. .++....++...+.+.+-.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~-l-g~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~~~~ 81 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD-L-GINVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFANPE 81 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH-T-TCEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHTCHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH-c-CCEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhCCHH
Confidence 56999999999999999999988 5 3445666544210 0 00111 1221222333333222100
Q ss_pred -hccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHH
Q 010501 130 -LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPE 208 (509)
Q Consensus 130 -L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e 208 (509)
+.....+..|.+......... .. ....+++|+.+++...+....|..||++++.+++..|...|+ |.+.+
T Consensus 82 ~~~~l~~~~~p~v~~~~~~~~~----~~-~~~~vi~~~~~l~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~~~ 152 (218)
T 1vht_A 82 EKNWLNALLHPLIQQETQHQIQ----QA-TSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRD----DVTRE 152 (218)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HC-CSSEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHHH----TCCHH
T ss_pred HHHHHHHhHCHHHHHHHHHHHH----hc-CCCEEEEEeeeeeccCccccCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence 000011112222110000000 00 123567788655433355668999999999888665544443 67777
Q ss_pred HHHHHHHHhhhhHHHHhhcCCCCceeEEEcCCC
Q 010501 209 EIIHQISETVYPMYKAFIEPDLQTAHIKIINKF 241 (509)
Q Consensus 209 ~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~~ 241 (509)
++...+... .+.+. + ...||++|.++.
T Consensus 153 ~~~~~~~~~-~~~~~-~----~~~ad~vId~~~ 179 (218)
T 1vht_A 153 HVEQILAAQ-ATREA-R----LAVADDVIDNNG 179 (218)
T ss_dssp HHHHHHHHS-CCHHH-H----HHHCSEEEECSS
T ss_pred HHHHHHHhc-CChHH-H----HHhCCEEEECCC
Confidence 766665542 33332 1 234788887654
No 99
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.52 E-value=1.5e-08 Score=93.54 Aligned_cols=159 Identities=17% Similarity=0.194 Sum_probs=83.2
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCcc-----ccccccCCC---CCCCchhhHHHHHHh----hcc
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-----RIIDGNFDD---PRLTDYDTLLENIRG----LKE 132 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~-----r~i~~~fq~---p~~~d~~tl~e~L~~----L~~ 132 (509)
++.+|+|+|++||||||+++.|+.. ....+..|.+.... ..+...|+. ...++...+.+.+.. +..
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~--g~~~id~d~~~~~~~~~~~~~i~~~~~~~~~~g~i~~~~l~~~~~~~~~~~~~ 84 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW--GYPVLDLDALAARARENKEEELKRLFPEAVVGGRLDRRALARLVFSDPERLKA 84 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT--TCCEEEHHHHHHHHHHHTHHHHHHHCGGGEETTEECHHHHHHHHTTSHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC--CCEEEcccHHHHHhcCChHHHHHHHHHHHHhCCCcCHHHHHHHHhCCHHHHHH
Confidence 4679999999999999999999987 45566666652110 011001110 111222222221100 000
Q ss_pred CcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 133 GKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 133 g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
...+..|.+. ..... .......+++|+||.+++...+....|..||++++.+.++.|...| .|.+.+++..
T Consensus 85 l~~~~~~~i~---~~~i~--~~~~~g~~~vi~d~~~l~~~~~~~~~d~~i~l~~~~e~~~~R~~~R----~~~~~~~~~~ 155 (203)
T 1uf9_A 85 LEAVVHPEVR---RLLME--ELSRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLEERVRRVMAR----SGLSREEVLA 155 (203)
T ss_dssp HHHHHHHHHH---HHHHH--HHHTCCCSEEEEECTTTTTTTCGGGSSEEEEECCCHHHHHHHHHTT----TCCTTHHHHH
T ss_pred HHHHhChHHH---HHHHH--HhhhcCCCEEEEEecceeccCchhhCCEEEEEECCHHHHHHHHHHc----CCCCHHHHHH
Confidence 0011112221 00000 0001125789999986655555666799999999988766555433 2566666555
Q ss_pred HHHHhhhhHHHHhhcCCCCceeEEEcCC
Q 010501 213 QISETVYPMYKAFIEPDLQTAHIKIINK 240 (509)
Q Consensus 213 ~y~~~V~P~~~~fIeP~k~~ADIII~n~ 240 (509)
.+.. ..+.+.. ...||++|.++
T Consensus 156 ~i~~-~~~~~~~-----~~~ad~vId~~ 177 (203)
T 1uf9_A 156 RERA-QMPEEEK-----RKRATWVLENT 177 (203)
T ss_dssp HHTT-SCCHHHH-----HHHCSEEECCS
T ss_pred HHHH-CCChhHH-----HHhCCEEEECC
Confidence 5543 2333221 24578888654
No 100
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.51 E-value=5.4e-10 Score=117.87 Aligned_cols=51 Identities=16% Similarity=0.273 Sum_probs=43.7
Q ss_pred EEeeeeceeeecCC-----------------ccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCc
Q 010501 51 IVIRACQLLAQKNH-----------------GIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (509)
Q Consensus 51 ~iLk~IsL~i~~Ge-----------------~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y 101 (509)
.++++|++.+++|+ .+.++||+|+||||||||+++|+++. |..|.|..++.
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~ 105 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVV 105 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCe
Confidence 47889999999998 56799999999999999999999988 66777776664
No 101
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=98.51 E-value=1.4e-08 Score=115.64 Aligned_cols=64 Identities=8% Similarity=0.068 Sum_probs=51.2
Q ss_pred ccCCCCcCCCeeeeecCccEEEEe---cceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 142 DFKSSSRIGYRTLEVPSSRIVIIE---GIYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 142 D~~~~~rsgg~~~~v~~a~VLIVE---Gi~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
+.....+|+|+.+++..+++|+.+ +.++++|||+..+|. .+...+..+++++.+.|.++.-+.|
T Consensus 725 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~-------~~~~~l~~lL~~L~~~G~tVIvisH 791 (842)
T 2vf7_A 725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHP-------ADVERLQRQLVKLVDAGNTVIAVEH 791 (842)
T ss_dssp TCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCH-------HHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 455567899999999999999986 688899999999998 5677777888888777876544333
No 102
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.50 E-value=5.7e-09 Score=106.54 Aligned_cols=91 Identities=18% Similarity=0.211 Sum_probs=67.7
Q ss_pred EeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCccccccccCCCCCCCchhhHHHHHHhh
Q 010501 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGL 130 (509)
Q Consensus 52 iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~r~i~~~fq~p~~~d~~tl~e~L~~L 130 (509)
+++++++.+++|+ +++|+||||||||||+++|++++ |..|.|.+++..... . .+....
T Consensus 160 ~l~~l~~~i~~g~---~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~----~-~~~~~~------------- 218 (330)
T 2pt7_A 160 AISAIKDGIAIGK---NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIV----F-KHHKNY------------- 218 (330)
T ss_dssp HHHHHHHHHHHTC---CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCC----C-SSCSSE-------------
T ss_pred HHhhhhhhccCCC---EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccc----c-ccchhE-------------
Confidence 6889999999999 99999999999999999999999 688999998753110 0 000000
Q ss_pred ccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccC
Q 010501 131 KEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRP 176 (509)
Q Consensus 131 ~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~ 176 (509)
+.. .+ + +++++++..++++..++.+++.||++.
T Consensus 219 -----i~~-~~----g---gg~~~r~~la~aL~~~p~ilildE~~~ 251 (330)
T 2pt7_A 219 -----TQL-FF----G---GNITSADCLKSCLRMRPDRIILGELRS 251 (330)
T ss_dssp -----EEE-EC----B---TTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred -----EEE-Ee----C---CChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence 000 00 0 567777888888888888888999886
No 103
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.49 E-value=3e-08 Score=92.72 Aligned_cols=63 Identities=19% Similarity=0.094 Sum_probs=38.8
Q ss_pred eeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCcc------ccccccCCCCCCCchhhHHHH
Q 010501 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS------RIIDGNFDDPRLTDYDTLLEN 126 (509)
Q Consensus 58 L~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~------r~i~~~fq~p~~~d~~tl~e~ 126 (509)
+..++|+ +|+|+|+|||||||++++|++.+ |.+.+++-.... ...++.++++..+......++
T Consensus 24 m~~~~g~---~i~l~G~~GsGKSTl~~~L~~~~---g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 92 (200)
T 4eun_A 24 MTGEPTR---HVVVMGVSGSGKTTIAHGVADET---GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAE 92 (200)
T ss_dssp ----CCC---EEEEECCTTSCHHHHHHHHHHHH---CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred hcCCCCc---EEEEECCCCCCHHHHHHHHHHhh---CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHH
Confidence 3345677 99999999999999999999987 445555432211 134666666544443333333
No 104
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=98.48 E-value=2.3e-08 Score=103.23 Aligned_cols=38 Identities=18% Similarity=0.325 Sum_probs=32.8
Q ss_pred cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 49 ~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+.+++++++.+.+| +++|+|+||||||||+++|..++
T Consensus 47 nf~~l~~v~l~~~~G----~~~lvG~NGaGKStLl~aI~~l~ 84 (415)
T 4aby_A 47 NLATITQLELELGGG----FCAFTGETGAGKSIIVDALGLLL 84 (415)
T ss_dssp EETTEEEEEEECCSS----EEEEEESHHHHHHHHTHHHHHHT
T ss_pred cccceeeEEEecCCC----cEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999988754 88999999999999999998776
No 105
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=98.48 E-value=2.2e-08 Score=114.91 Aligned_cols=65 Identities=8% Similarity=0.025 Sum_probs=52.0
Q ss_pred ccCCCCcCCCeeeeecCccEEEEec---ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHH
Q 010501 142 DFKSSSRIGYRTLEVPSSRIVIIEG---IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (509)
Q Consensus 142 D~~~~~rsgg~~~~v~~a~VLIVEG---i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~ 213 (509)
+....++|||+.|++..++.|+-++ .++++|||+..||. .+.+.+..+.+++.+.|.|+.-|.|.
T Consensus 800 gq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~-------~~~~~L~~lL~~L~~~G~TVIvI~Hd 867 (916)
T 3pih_A 800 GQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHF-------EDVRKLVEVLHRLVDRGNTVIVIEHN 867 (916)
T ss_dssp TCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCH-------HHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 4455789999999999999998764 68889999999998 57777888888888788776544443
No 106
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.46 E-value=6.6e-08 Score=85.88 Aligned_cols=155 Identities=19% Similarity=0.223 Sum_probs=76.1
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCccccccccCCCCCCCchhhHHHHHHhhccCcceeccccccCCC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYDFKSS 146 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD~~~~ 146 (509)
.+|+|+|++||||||+++.| ..+ +...+.++++......... ....+.....+.+... .+........ .
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~-g~~~i~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-~~~~~~~~~~----~ 70 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER-GAKVIVMSDVVRKRYSIEA----KPGERLMDFAKRLREI-YGDGVVARLC----V 70 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT-TCEEEEHHHHHHHHHHHHC-------CCHHHHHHHHHHH-HCTTHHHHHH----H
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC-CCcEEEHhHHHHHHHHhcC----CChhHHHHHHHHHHhh-CCHHHHHHHH----H
Confidence 38999999999999999999 666 3345665544211100000 0011111111111110 0000000000 0
Q ss_pred CcCCCeeeeecCccEEEEecceeee--ccccCC---CCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhH
Q 010501 147 SRIGYRTLEVPSSRIVIIEGIYALS--EKLRPL---IDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISETVYPM 221 (509)
Q Consensus 147 ~rsgg~~~~v~~a~VLIVEGi~aL~--dElr~l---LDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~V~P~ 221 (509)
+.........+|+||..... +.+... -+..||+++|.++++.|...|+-...+.+.+++.+++.......
T Consensus 71 -----~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~ 145 (179)
T 3lw7_A 71 -----EELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLG 145 (179)
T ss_dssp -----HHHCSCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHT
T ss_pred -----HHHHhcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccC
Confidence 00001234678999972111 123232 34899999999887766655544344567888877764322111
Q ss_pred HHHhhcCCCCceeEEEcCCC
Q 010501 222 YKAFIEPDLQTAHIKIINKF 241 (509)
Q Consensus 222 ~~~fIeP~k~~ADIII~n~~ 241 (509)
..+....||++|.|+.
T Consensus 146 ----~~~~~~~ad~vId~~~ 161 (179)
T 3lw7_A 146 ----IGEVIAMADYIITNDS 161 (179)
T ss_dssp ----HHHHHHTCSEEEECCS
T ss_pred ----hHhHHHhCCEEEECCC
Confidence 2223357899997543
No 107
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=98.45 E-value=4.2e-08 Score=112.65 Aligned_cols=64 Identities=9% Similarity=0.023 Sum_probs=51.0
Q ss_pred ccCCCCcCCCeeeeecCccEEEEec---ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 142 DFKSSSRIGYRTLEVPSSRIVIIEG---IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 142 D~~~~~rsgg~~~~v~~a~VLIVEG---i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
+.....+|+|+.+++..+++|+.++ .++++|||+..+|. .+.+.+..+++++.+.|.++.-+.|
T Consensus 840 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~-------~~~~~l~~lL~~L~~~G~TVIvisH 906 (972)
T 2r6f_A 840 GQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHV-------DDIARLLDVLHRLVDNGDTVLVIEH 906 (972)
T ss_dssp TCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCH-------HHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred cCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 4555678999999999999999764 88899999999998 4667777778888777877544444
No 108
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.44 E-value=1.6e-07 Score=87.37 Aligned_cols=35 Identities=26% Similarity=0.276 Sum_probs=28.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcc
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 102 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~ 102 (509)
.+|+|+|++||||||+++.|++.+ +...+..|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l-g~~~i~~d~~~ 53 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC-GYPFIEGDALH 53 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH-TCCEEEGGGGC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh-CCEEEeCCcCc
Confidence 489999999999999999999887 33456666553
No 109
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.43 E-value=1.2e-08 Score=100.51 Aligned_cols=47 Identities=13% Similarity=0.075 Sum_probs=36.4
Q ss_pred eee-EEEe-CcEEEeeeeceeeec---CCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 41 DTL-SFEK-GFFIVIRACQLLAQK---NHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 41 ~~l-sf~~-g~~~iLk~IsL~i~~---Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+++ +|.+ +...+|++++|.+.+ |+ +|+|+|++||||||+++.|++.+
T Consensus 21 ~~~~~~~~~~~~~~l~~~~~~i~~~l~g~---~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 21 GSLLHSPFDEEQQILKKKAEEVKPYLNGR---SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------CHHHHHHHHTTHHHHTTC---CEEEECSTTSCHHHHHHHHHHHH
T ss_pred cceeeEEecCcchhhhhhhhhhhhhcCCC---EEEEECCCCCCHHHHHHHHHHhc
Confidence 456 7777 667899999999999 99 99999999999999999999977
No 110
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.43 E-value=9.4e-08 Score=96.53 Aligned_cols=74 Identities=15% Similarity=0.072 Sum_probs=57.8
Q ss_pred eeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc-------------ccccccCCCCC-CC
Q 010501 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------------RIIDGNFDDPR-LT 118 (509)
Q Consensus 54 k~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~-------------r~i~~~fq~p~-~~ 118 (509)
..+++.+.+|+ +++|+|||||||||++++|++.+ |..|.|.+++....+ ..+++++|++. .+
T Consensus 91 ~~l~~~~~~g~---vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~ 167 (302)
T 3b9q_A 91 TELQLGFRKPA---VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 167 (302)
T ss_dssp CSCCCCSSSCE---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCC
T ss_pred cccccccCCCc---EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccC
Confidence 46777788888 99999999999999999999998 677888887653211 24678899888 78
Q ss_pred chhhHHHHHHhh
Q 010501 119 DYDTLLENIRGL 130 (509)
Q Consensus 119 d~~tl~e~L~~L 130 (509)
+..++.+++...
T Consensus 168 ~~~~v~e~l~~~ 179 (302)
T 3b9q_A 168 AATVLSKAVKRG 179 (302)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888888753
No 111
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=98.42 E-value=7.1e-08 Score=111.10 Aligned_cols=64 Identities=9% Similarity=0.019 Sum_probs=50.6
Q ss_pred ccCCCCcCCCeeeeecCccEEEEec---ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHH
Q 010501 142 DFKSSSRIGYRTLEVPSSRIVIIEG---IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIH 212 (509)
Q Consensus 142 D~~~~~rsgg~~~~v~~a~VLIVEG---i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~ 212 (509)
+.....+|+|+.+++..+++|+.++ .++++|||+..+|. .+.+.+..+++.+.+.|.++.-+.|
T Consensus 858 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~-------~~~~~l~~lL~~L~~~G~TVIvisH 924 (993)
T 2ygr_A 858 GQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHF-------DDIRKLLNVINGLVDKGNTVIVIEH 924 (993)
T ss_dssp TCCGGGSCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCH-------HHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred cCccccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCH-------HHHHHHHHHHHHHHhCCCEEEEEcC
Confidence 4455678999999999999999764 88899999999998 5667777777777777876544433
No 112
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.40 E-value=4.7e-08 Score=92.01 Aligned_cols=69 Identities=19% Similarity=0.190 Sum_probs=38.7
Q ss_pred cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCe-eEEEECCccC---ccccccccCCCCCCCchhh
Q 010501 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSI-AVITMDNYND---SSRIIDGNFDDPRLTDYDT 122 (509)
Q Consensus 49 ~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~-g~I~~D~y~~---~~r~i~~~fq~p~~~d~~t 122 (509)
..+++++ ..+++|+ +++|+||||||||||+++|+++++.. +.+...+... ..+.++++||++..++..+
T Consensus 8 ~~~~~~~--~~i~~Ge---i~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 80 (207)
T 1znw_A 8 TKPTARG--QPAAVGR---VVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLI 80 (207)
T ss_dssp -------------CCC---EEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH
T ss_pred CCcCCCC--CCCCCCC---EEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHH
Confidence 3456677 5889999 99999999999999999999998521 1111111111 1234778888776554433
No 113
>3ghx_A Adenylate cyclase CYAB; CYTH domain, antiparallel barrel, product complex, cyclic AMP, lyase; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0y_A* 3n0z_A* 3n10_A* 2fjt_A
Probab=98.39 E-value=9.8e-07 Score=82.81 Aligned_cols=143 Identities=17% Similarity=0.261 Sum_probs=106.0
Q ss_pred HHHHHHHhcccccc---cccceeeEEEeCCCCCccccccceeeeccC--ceEEEEeeecccCCCeEeccccceeeceeec
Q 010501 262 VDEIKAVMSKEHTE---TTEETYDIYLLPPGEDPDACQSYLRMRNRD--GKYNLMFEEWVTDSPFIISPRITFEVSVRLL 336 (509)
Q Consensus 262 ~~~i~~~l~~~~~~---~~~~~~diyl~pp~~~~~~~~~~ir~r~~~--~~~~l~~~~~i~~~~f~~~P~~~f~v~~~~~ 336 (509)
.+.+...|...... ......|+|+.-|.........|+|.|..+ |++.+.+..+-.+. +..+|--+++ .+
T Consensus 20 ~~~~~~~L~~~g~~~~~~~~~q~d~yfd~p~~~l~~~~~~lRiR~~~~~~~~~~t~Kgp~~~~-~~e~~v~d~~----~~ 94 (179)
T 3ghx_A 20 LTTLHEQLVAQKATAFTLNNHEKDIYLDANGQDLAKQQISMVLREMNPSGIRLWIVKGPGAER-CEASNIEDVS----KV 94 (179)
T ss_dssp HHHHHHHHHHTTCEEEEEEEEEEEEEEECTTCTTGGGTCEEEEEEEETTCCEEEEEECSSSSB-EEEEECSCHH----HH
T ss_pred HHHHHHHHHhcCCccccCcceEEEEEEeCCCccHHHCCcEEEEEEecCCCcEEEEEecCCCCc-EEEEEcCCHH----HH
Confidence 45666666654322 223456999999999998889999999884 77776665554432 3333322211 11
Q ss_pred cc-ccccCceEEEEEEeccceeecCcEEEEehhhhhcCcceEEEeccC---------hhHHHHHHhhhcCcc-CccchhH
Q 010501 337 GG-LMALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGRD---------RLYVKYVGEQLGLDG-SYVPRTY 405 (509)
Q Consensus 337 ~g-l~~lgy~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~---------~~~v~~~~~~l~~~~-~~~~~~y 405 (509)
.. |..|||.++..+...-.+|.-+.+.|.+|+.++|+ +|+-|-... ++.+.+++.+|||+. .-+++||
T Consensus 95 ~~iL~~LG~~~~~~v~K~R~~y~~~~~~i~LD~v~glG-~f~EIE~~~~d~~~~~~~~~~i~~l~~~LGi~~~~~~~~sY 173 (179)
T 3ghx_A 95 QSMLATLGYHPAFTIEKQRSIYFVGKFHITVDHLTGLG-DFAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSY 173 (179)
T ss_dssp HHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCH
T ss_pred HHHHHHCCCcEEEEEEEEEEEEEECCEEEEEEccCCCc-cEEEEEEEcCChhhHHHHHHHHHHHHHHcCcChhhceehhH
Confidence 22 34899999999999999999999999999999998 899998653 367788999999988 5899999
Q ss_pred HHHHH
Q 010501 406 IEQIQ 410 (509)
Q Consensus 406 ~~~~~ 410 (509)
+|+++
T Consensus 174 ~eLl~ 178 (179)
T 3ghx_A 174 RQLLG 178 (179)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 98763
No 114
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=98.37 E-value=2.3e-07 Score=89.49 Aligned_cols=158 Identities=15% Similarity=0.155 Sum_probs=96.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcc-----Ccc---c----ccc-ccCCCCCCCchhhHHHHHHh---
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN-----DSS---R----IID-GNFDDPRLTDYDTLLENIRG--- 129 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~-----~~~---r----~i~-~~fq~p~~~d~~tl~e~L~~--- 129 (509)
..-|||+|+-||||||+++.|.. + +...|..|... ... . ..+ ..++....+|-..+.+.+-.
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~-g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~d~~ 86 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-R-GASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFSDED 86 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-T-TCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHHCHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-C-CCcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhCCHH
Confidence 45899999999999999999988 5 45567666531 110 0 111 12333334555444444311
Q ss_pred -hccCcceeccccccCCCCcCCCeeeeecCccEEEEecceeee-ccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCH
Q 010501 130 -LKEGKAVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALS-EKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEP 207 (509)
Q Consensus 130 -L~~g~~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~-dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~ 207 (509)
+..-..+..|..-....... .-...+++++|..+++- ......+|..|+|++|.++++.|-+.|| |.+.
T Consensus 87 ~~~~L~~i~HP~I~~~~~~~~-----~~~~~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd----g~s~ 157 (210)
T 4i1u_A 87 ARRRLEAITHPLIRAETEREA-----RDAQGPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVMQRN----GFTR 157 (210)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-----HTCCSSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHHH----CCCH
T ss_pred HHHHHHHHhhHHHHHHHHHHH-----HhcCCCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHHhcC----CCCH
Confidence 11112222332111000000 00123578899988776 5666789999999999999887777766 9999
Q ss_pred HHHHHHHHHhhhhHHHHhhcCCCCceeEEEcCC
Q 010501 208 EEIIHQISETVYPMYKAFIEPDLQTAHIKIINK 240 (509)
Q Consensus 208 e~Vi~~y~~~V~P~~~~fIeP~k~~ADIII~n~ 240 (509)
+++..++... .|..+. +..||++|.|+
T Consensus 158 eea~~ri~~Q-~~~eek-----~~~AD~VIdN~ 184 (210)
T 4i1u_A 158 EQVEAIIARQ-ATREAR-----LAAADDVIVND 184 (210)
T ss_dssp HHHHHHHHHS-CCHHHH-----HHTCSEEEECS
T ss_pred HHHHHHHHHc-CChHHH-----HHhCCEEEECC
Confidence 9988877554 454332 36899999876
No 115
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.37 E-value=8.5e-08 Score=98.87 Aligned_cols=75 Identities=16% Similarity=0.228 Sum_probs=54.4
Q ss_pred eeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccC-----ccccccccC-CCCCC--CchhhH
Q 010501 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND-----SSRIIDGNF-DDPRL--TDYDTL 123 (509)
Q Consensus 53 Lk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~-----~~r~i~~~f-q~p~~--~d~~tl 123 (509)
++++++.+++|+ +++|+||||||||||+++|++.+ |..|.|.+++... ..+.+++++ |++.. ++..++
T Consensus 165 ~~~l~~~i~~G~---~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~ 241 (361)
T 2gza_A 165 MSFLRRAVQLER---VIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKEEENAPVTA 241 (361)
T ss_dssp HHHHHHHHHTTC---CEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC----------CCH
T ss_pred HHHHHHHHhcCC---EEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCccccccccccCH
Confidence 389999999999 99999999999999999999999 6889999987532 123456677 55432 245567
Q ss_pred HHHHHhh
Q 010501 124 LENIRGL 130 (509)
Q Consensus 124 ~e~L~~L 130 (509)
.+++...
T Consensus 242 ~~~i~~~ 248 (361)
T 2gza_A 242 ATLLRSC 248 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777653
No 116
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=98.36 E-value=6.6e-08 Score=102.55 Aligned_cols=86 Identities=13% Similarity=0.051 Sum_probs=66.5
Q ss_pred eeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc---C------------
Q 010501 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN---D------------ 103 (509)
Q Consensus 41 ~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~---~------------ 103 (509)
+++++.++ ...+|+++ |.+.+|+ +++|.||||||||||+++|+++. |+.|.|.++|.. .
T Consensus 135 ~~v~~~~~tg~~vld~v-l~i~~Gq---~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~ 210 (438)
T 2dpy_A 135 TPIEHVLDTGVRAINAL-LTVGRGQ---RMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDG 210 (438)
T ss_dssp CCCCSBCCCSCHHHHHH-SCCBTTC---EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHH
T ss_pred eccceecCCCceEEeee-EEecCCC---EEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccc
Confidence 45566555 46789999 9999999 99999999999999999999999 789999998862 1
Q ss_pred ccccccccCCC-CCCCchhhHHHHHHhh
Q 010501 104 SSRIIDGNFDD-PRLTDYDTLLENIRGL 130 (509)
Q Consensus 104 ~~r~i~~~fq~-p~~~d~~tl~e~L~~L 130 (509)
..+.+++++|+ ...+...++.+++...
T Consensus 211 l~r~i~~v~q~~~~~~~~~~v~~~~~~~ 238 (438)
T 2dpy_A 211 RARSVVIAAPADVSPLLRMQGAAYATRI 238 (438)
T ss_dssp HHTEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred cCceEEEEECCCCCHHHHHHHHHHHHHH
Confidence 11345778874 3445667777776553
No 117
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.34 E-value=1.1e-07 Score=87.60 Aligned_cols=27 Identities=15% Similarity=0.347 Sum_probs=24.6
Q ss_pred cCCccEEEEEECCCCCcHHHHHHHHHhhCC
Q 010501 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (509)
Q Consensus 62 ~Ge~~iIIgI~GpSGSGKTTLar~L~~llp 91 (509)
.|+ +++|+||||||||||+++|.+.++
T Consensus 4 ~g~---~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRK---TLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCC---EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCC---EEEEECCCCCCHHHHHHHHHhhCC
Confidence 356 999999999999999999999885
No 118
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=98.34 E-value=2.2e-07 Score=102.19 Aligned_cols=63 Identities=14% Similarity=0.134 Sum_probs=46.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC-C-CeeEEEECCccC----------ccccccccCCCCCCCchhhHHHHHHhh
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNYND----------SSRIIDGNFDDPRLTDYDTLLENIRGL 130 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll-p-~~g~I~~D~y~~----------~~r~i~~~fq~p~~~d~~tl~e~L~~L 130 (509)
.++|+|+||||||||+++|+|++ | +.|.|..++... ..+.++++||++..++..++.+++...
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~ 121 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKA 121 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHH
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHH
Confidence 59999999999999999999998 7 689998887641 124578999999999999999998764
No 119
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=98.32 E-value=3.4e-07 Score=85.74 Aligned_cols=29 Identities=41% Similarity=0.599 Sum_probs=25.3
Q ss_pred ecCCccEEEEEECCCCCcHHHHHHHHHhhCCC
Q 010501 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMPS 92 (509)
Q Consensus 61 ~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~ 92 (509)
..|. +|+|+|||||||||+++.|+..++.
T Consensus 10 ~~~~---~i~l~G~sGsGKsTl~~~L~~~~~~ 38 (204)
T 2qor_A 10 ARIP---PLVVCGPSGVGKGTLIKKVLSEFPS 38 (204)
T ss_dssp CCCC---CEEEECCTTSCHHHHHHHHHHHCTT
T ss_pred ccCC---EEEEECCCCCCHHHHHHHHHHhCcc
Confidence 4556 9999999999999999999998853
No 120
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.31 E-value=2.7e-07 Score=95.60 Aligned_cols=74 Identities=15% Similarity=0.072 Sum_probs=59.1
Q ss_pred eeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc-------------ccccccCCCCC-CC
Q 010501 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-------------RIIDGNFDDPR-LT 118 (509)
Q Consensus 54 k~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~-------------r~i~~~fq~p~-~~ 118 (509)
..+++.+++|+ +++|+|||||||||++++|++.+ |..|.|.+++....+ ..+++++|++. .+
T Consensus 148 ~~l~l~~~~g~---vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~ 224 (359)
T 2og2_A 148 TELQLGFRKPA---VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAK 224 (359)
T ss_dssp CSCCCCSSSSE---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCC
T ss_pred CCcceecCCCe---EEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccC
Confidence 45777788888 99999999999999999999998 667888887653211 24678899887 77
Q ss_pred chhhHHHHHHhh
Q 010501 119 DYDTLLENIRGL 130 (509)
Q Consensus 119 d~~tl~e~L~~L 130 (509)
+..++.+++...
T Consensus 225 p~~tv~e~l~~~ 236 (359)
T 2og2_A 225 AATVLSKAVKRG 236 (359)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhhhHHHHHHHH
Confidence 888888888753
No 121
>2een_A Hypothetical protein PH1819; dimer, NPPSFA, national project on Pro structural and functional analyses; 1.65A {Pyrococcus horikoshii}
Probab=98.31 E-value=1.7e-06 Score=80.87 Aligned_cols=132 Identities=23% Similarity=0.338 Sum_probs=102.4
Q ss_pred ceeeEEEeCCCCCccccccceeee----ccCceEEEEeeecccCCCeEeccccceeec--eeeccccc-ccCceEEEEEE
Q 010501 279 ETYDIYLLPPGEDPDACQSYLRMR----NRDGKYNLMFEEWVTDSPFIISPRITFEVS--VRLLGGLM-ALGYTIATILK 351 (509)
Q Consensus 279 ~~~diyl~pp~~~~~~~~~~ir~r----~~~~~~~l~~~~~i~~~~f~~~P~~~f~v~--~~~~~gl~-~lgy~~~~~~~ 351 (509)
...|+|+..|+.+.....-|||.| +.++++.+.+..+-.++....+|-++.+|. ...+..+| .+|++....+.
T Consensus 29 ~q~d~YfDtp~~~L~~~~~~LRiR~~~~~~~~~~~lT~K~p~~~~~~~~r~E~e~~v~~~~~~~~~~L~~lgl~~~~~~~ 108 (183)
T 2een_A 29 IHEDIYYQHPCRDFSKTDEALRIRIKRFNGHNEVFLTYKGPKIDEKSKTRLEIEVEIQEDVDKYFELLDRLGFKEVLKVV 108 (183)
T ss_dssp EEEEEEEECSSSCHHHHTCEEEEEEEEETTEEEEEEEEEEEECCTTSCCEEEEEEEECSCHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEeEEcCCCccHHhCCeEEEEeeeecCCCCEEEEEECCCcCCCCceeEEEEEEeecCCHHHHHHHHHHCCCeEEEEEE
Confidence 355999999999998888999999 778888888876655555555665444443 11123334 49999999998
Q ss_pred eccceeecC-cEEEEehhhhhcCcceEEEecc---------ChhHHHHHHhhhcCccCccchhHHHHHHHhh
Q 010501 352 RSSHIFYDD-RVCVKTDWLEQLNRKYVQVQGR---------DRLYVKYVGEQLGLDGSYVPRTYIEQIQLEK 413 (509)
Q Consensus 352 r~~~~~~~~-~~~~~~~~~~~~~~~~~~~~g~---------~~~~v~~~~~~l~~~~~~~~~~y~~~~~~~~ 413 (509)
..-..|.-+ .+.|.+|+.+.++. |+-|-.. .+..+.+.+.+||| +..+++||+|++ +++
T Consensus 109 k~R~~~~~~~~~~v~lD~~~~lg~-f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi-~~~~~~sY~ell-~~~ 177 (183)
T 2een_A 109 KTREKYYVEKGVTITLDEVEGLGK-FIEIETLVKEKDEIPEAVEKLEKILRELGV-EKFERRSYLELL-LEK 177 (183)
T ss_dssp EEEEEEEEETTEEEEEEEETTTEE-EEEEEEECSSGGGHHHHHHHHHHHHHHHTC-CCBCCSCHHHHH-HHT
T ss_pred EEEEEEEeCCCEEEEEEeecCCee-EEEEEEecCCcccHHHHHHHHHHHHHHcCC-CCceeccHHHHH-Hhh
Confidence 888888888 89999999998875 8787753 25678889999999 999999999887 444
No 122
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.29 E-value=3e-07 Score=99.11 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=59.8
Q ss_pred eeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------------cccccccCCCCCCC
Q 010501 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------SRIIDGNFDDPRLT 118 (509)
Q Consensus 53 Lk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------------~r~i~~~fq~p~~~ 118 (509)
.++++|.+..|+ +++|+|+||||||||+++|++++ +..|.|.+++.... ++.+++++|++..+
T Consensus 283 ~~~Isl~i~~Ge---VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~ 359 (503)
T 2yhs_A 283 DEPLNVEGKAPF---VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGAD 359 (503)
T ss_dssp BCCCCCCSCTTE---EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCC
T ss_pred CCCceeeccCCe---EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcC
Confidence 357888888898 99999999999999999999998 56677777543211 12467888888777
Q ss_pred chhhHHHHHHhhc
Q 010501 119 DYDTLLENIRGLK 131 (509)
Q Consensus 119 d~~tl~e~L~~L~ 131 (509)
+..++.+++...+
T Consensus 360 p~~tV~e~l~~a~ 372 (503)
T 2yhs_A 360 SASVIFDAIQAAK 372 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7888888887653
No 123
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.26 E-value=3.6e-08 Score=91.91 Aligned_cols=101 Identities=10% Similarity=0.051 Sum_probs=62.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcc-------CccccccccCCCCCCCchhhHHHHHHhhccCcceeccc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN-------DSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPI 140 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~-------~~~r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~ 140 (509)
.++|+||||||||||+++|++.++ +.++++. ...+.+++.++++...+. + +........+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~~~~------~--~~~~~~~~~~~ 69 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG----KRAIGFWTEEVRDPETKKRTGFRIITTEGKKK------I--FSSKFFTSKKL 69 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG----GGEEEEEEEEEC------CCEEEEEETTCCEE------E--EEETTCCCSSE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC----CcCCCEEhhhhccccccceeEEEeecCcHHHH------H--HHhhcCCcccc
Confidence 689999999999999999999983 2223321 112345666665421110 0 00000000011
Q ss_pred cccCCCCcCCCeeeeecCccE-----EEEecceeeecc--ccCCCCe
Q 010501 141 YDFKSSSRIGYRTLEVPSSRI-----VIIEGIYALSEK--LRPLIDL 180 (509)
Q Consensus 141 yD~~~~~rsgg~~~~v~~a~V-----LIVEGi~aL~dE--lr~lLDl 180 (509)
.+......|+|+.+++..+++ ++.++.+++.|| +.+.+|.
T Consensus 70 ~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~ 116 (178)
T 1ye8_A 70 VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSK 116 (178)
T ss_dssp ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCH
T ss_pred ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCH
Confidence 122233567788888888886 888999999999 8998885
No 124
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.21 E-value=4.1e-07 Score=97.72 Aligned_cols=50 Identities=16% Similarity=0.290 Sum_probs=44.9
Q ss_pred EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccC
Q 010501 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYND 103 (509)
Q Consensus 50 ~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~ 103 (509)
..++++++|.+++ + +++|+||||||||||+++|++++ |..|.|.+++...
T Consensus 17 ~~~l~~vsl~i~~-e---~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 17 WNGFFARTFDFDE-L---VTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp ETTEEEEEEECCS-S---EEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred cccccceEEEEcc-c---eEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 4468899999999 9 99999999999999999999998 7889999988643
No 125
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.20 E-value=1.2e-06 Score=88.65 Aligned_cols=65 Identities=15% Similarity=0.067 Sum_probs=52.6
Q ss_pred cCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-------------cccccccCCCCCCCchhhHHHHH
Q 010501 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-------------SRIIDGNFDDPRLTDYDTLLENI 127 (509)
Q Consensus 62 ~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-------------~r~i~~~fq~p~~~d~~tl~e~L 127 (509)
+|+ +++|+||||||||||+++|++.+ |..|.|.+++.... ...+++++|++..++..++.+++
T Consensus 101 ~g~---vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGR---VVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSS---EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCe---EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 456 99999999999999999999998 77788888775321 12467889998888888888887
Q ss_pred Hh
Q 010501 128 RG 129 (509)
Q Consensus 128 ~~ 129 (509)
..
T Consensus 178 ~~ 179 (304)
T 1rj9_A 178 QA 179 (304)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 126
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.19 E-value=1.5e-06 Score=78.72 Aligned_cols=23 Identities=26% Similarity=0.455 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
+|+|+|+|||||||+++.|++.+
T Consensus 10 ~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHhh
Confidence 99999999999999999999876
No 127
>2dc4_A PH1012 protein, 165AA long hypothetical protein; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.65A {Pyrococcus horikoshii}
Probab=98.18 E-value=7.2e-06 Score=75.20 Aligned_cols=140 Identities=24% Similarity=0.358 Sum_probs=104.5
Q ss_pred HHHHHHHhccccc--ccccceeeEEEeCCCCCccccccceeee--ccCceEEEEeeecccCCCeEeccccceeecee-ec
Q 010501 262 VDEIKAVMSKEHT--ETTEETYDIYLLPPGEDPDACQSYLRMR--NRDGKYNLMFEEWVTDSPFIISPRITFEVSVR-LL 336 (509)
Q Consensus 262 ~~~i~~~l~~~~~--~~~~~~~diyl~pp~~~~~~~~~~ir~r--~~~~~~~l~~~~~i~~~~f~~~P~~~f~v~~~-~~ 336 (509)
.+.+...+..... .......|.|+..|.. .++|+| +.++++.|.+..+- ++....++-.+++|.-. .+
T Consensus 11 ~~~~~~~l~~~~~~~~~~~~q~d~Yfdt~~~------~~LRiR~~~~~~~~~lT~K~~~-~g~~~~~~E~e~~i~~~~~~ 83 (165)
T 2dc4_A 11 FEDIKRKIEGLGAKFFGIEEQEDVYFELPSP------KLLRVRKINNTGKSYITYKEIL-DKRNEEFYELEFEVQDPEGA 83 (165)
T ss_dssp HHHHHHHHHHHTCEEEEEEEEEEEEECCSTT------EEEEEEEETTTTEEEEEEEEEC-SSSSCEEEEEEEEBSCHHHH
T ss_pred HHHHHHHHHhcCCCcCcceeEEEEEEcCCCC------CEEEEEEEcCCCEEEEEEeCcC-CCCceeeeEEEEEcCCHHHH
Confidence 4455555554221 1122355899977654 799999 56899999997776 77766666666555221 11
Q ss_pred ccc-cccCceEEEEEEeccceeecCcEEEEehhhhhcCcceEEEeccC------hhHHHHHHhhhcCccC-ccchhHHHH
Q 010501 337 GGL-MALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQGRD------RLYVKYVGEQLGLDGS-YVPRTYIEQ 408 (509)
Q Consensus 337 ~gl-~~lgy~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~------~~~v~~~~~~l~~~~~-~~~~~y~~~ 408 (509)
..+ -.||+.....+...-..|.-+.+.|.+|+.++++ .|+-|-..+ ++.+.+++.+|||+.. .+++||+|+
T Consensus 84 ~~~L~~lg~~~~~~~~k~R~~~~~~~~~i~lD~~~~~g-~~~EiE~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY~el 162 (165)
T 2dc4_A 84 IELFKRLGFKVQGVVKKRRWIYKLNNVTFELNRVEKAG-DFLDIEVITSNPEEGKKIIWDVARRLGLKEEDVEPKLYIEL 162 (165)
T ss_dssp HHHHHHTTCCEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEECCSCHHHHHHHHHHHHHHTTCCGGGBCCSCHHHH
T ss_pred HHHHHHcCCcEEEEEEEEEEEEEECCEEEEEEecCCCc-cEEEEEEEcCCHHHHHHHHHHHHHHcCCCcccceehhHHHH
Confidence 222 3679999988888888898899999999999988 998998775 7789999999999988 899999987
Q ss_pred H
Q 010501 409 I 409 (509)
Q Consensus 409 ~ 409 (509)
+
T Consensus 163 l 163 (165)
T 2dc4_A 163 I 163 (165)
T ss_dssp C
T ss_pred h
Confidence 5
No 128
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.16 E-value=5.2e-07 Score=82.09 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=28.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
+.+|+|.|++||||||+++.|+..+. ...|..|+.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~-~~~i~~d~~ 37 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG-YTHLSAGEL 37 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC-CeEEeHHHH
Confidence 56999999999999999999998763 345666654
No 129
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=98.15 E-value=6.2e-07 Score=92.30 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=48.6
Q ss_pred eeeEEEeC-cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCc
Q 010501 41 DTLSFEKG-FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (509)
Q Consensus 41 ~~lsf~~g-~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y 101 (509)
.++++.++ ...+++++ |.+.+|+ ++||.||||||||||+++|++.. |+.|.+.+.|.
T Consensus 49 ~~l~~~~~tg~~ald~l-l~i~~Gq---~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~ 107 (347)
T 2obl_A 49 QVIDQPFILGVRAIDGL-LTCGIGQ---RIGIFAGSGVGKSTLLGMICNGASADIIVLALIGE 107 (347)
T ss_dssp CCCCSEECCSCHHHHHH-SCEETTC---EEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred cccceecCCCCEEEEee-eeecCCC---EEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecc
Confidence 34555554 56789999 9999999 99999999999999999999999 78888887664
No 130
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=98.14 E-value=4.3e-07 Score=83.43 Aligned_cols=60 Identities=15% Similarity=0.247 Sum_probs=38.5
Q ss_pred CCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHH-HHHHHhhhhHHHHhhcCCC-CceeEEEcCC
Q 010501 176 PLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEII-HQISETVYPMYKAFIEPDL-QTAHIKIINK 240 (509)
Q Consensus 176 ~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi-~~y~~~V~P~~~~fIeP~k-~~ADIII~n~ 240 (509)
...|..||+++|.++++ +|+. .||++.+... ..+...+...|..+.++.. ..|+++|.++
T Consensus 123 ~~~d~vi~L~~~~e~~~-~Rl~----~R~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~ 184 (205)
T 2jaq_A 123 LSFDIVIYLRVSTKTAI-SRIK----KRGRSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAE 184 (205)
T ss_dssp CCCSEEEEEECCHHHHH-HHHH----HHTCHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETT
T ss_pred CCCCEEEEEeCCHHHHH-HHHH----HcCChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECC
Confidence 45789999999987754 3332 3566554321 2455566677776665544 6789998654
No 131
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.13 E-value=1e-07 Score=97.41 Aligned_cols=75 Identities=13% Similarity=0.076 Sum_probs=54.5
Q ss_pred eeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCc-----------ccccc
Q 010501 42 TLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDS-----------SRIID 109 (509)
Q Consensus 42 ~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~-----------~r~i~ 109 (509)
++++.++...+++++++.+.+|+ +++|+|+||||||||+++|++.+ |..|.|.+.+.... ...++
T Consensus 34 ~~~~~~~~~~~l~~i~~~~~~g~---~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~ 110 (337)
T 2qm8_A 34 RADHRAAVRDLIDAVLPQTGRAI---RVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMA 110 (337)
T ss_dssp SHHHHHHHHHHHHHHGGGCCCSE---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGST
T ss_pred CcccccChHHHHHhCCcccCCCe---EEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhhe
Confidence 34444444568899999999999 99999999999999999999987 55566655543221 12456
Q ss_pred ccCCCCCCCc
Q 010501 110 GNFDDPRLTD 119 (509)
Q Consensus 110 ~~fq~p~~~d 119 (509)
+++|++..+.
T Consensus 111 ~v~q~~~~~~ 120 (337)
T 2qm8_A 111 RLAIDRNAFI 120 (337)
T ss_dssp TGGGCTTEEE
T ss_pred eeccCccccc
Confidence 7777766543
No 132
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.11 E-value=1.8e-07 Score=93.95 Aligned_cols=50 Identities=20% Similarity=0.223 Sum_probs=21.2
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhh-C-CCeeEEEECC
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF-M-PSIAVITMDN 100 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~l-l-p~~g~I~~D~ 100 (509)
++++..++...++++++|.+ +|+|+||||||||++.|.+. + |..| +.+++
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I---------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g 53 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL---------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAA 53 (301)
T ss_dssp ----------------CEEE---------EEEEETTSSHHHHHHHHHC--------------
T ss_pred CCCcceECCEEEEcCCCEEE---------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCC
Confidence 35666677778888888765 99999999999999999876 4 6666 55444
No 133
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.10 E-value=4e-07 Score=89.97 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=40.4
Q ss_pred EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CC-eeEEEECCc
Q 010501 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-IAVITMDNY 101 (509)
Q Consensus 51 ~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~-~g~I~~D~y 101 (509)
.+|++++ +++|+ +++|+||||||||||+++|++.+ |. .|.|.+++.
T Consensus 15 ~vl~~i~--i~~g~---~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~ 62 (261)
T 2eyu_A 15 DKVLELC--HRKMG---LILVTGPTGSGKSTTIASMIDYINQTKSYHIITIED 62 (261)
T ss_dssp THHHHGG--GCSSE---EEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEES
T ss_pred HHHHHHh--hCCCC---EEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCC
Confidence 4788888 78899 99999999999999999999998 55 788887764
No 134
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.08 E-value=1.9e-06 Score=78.80 Aligned_cols=38 Identities=18% Similarity=0.443 Sum_probs=32.9
Q ss_pred eecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 60 i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
+++|+ +++|+||||||||||+++|++. +..|.|.+++.
T Consensus 6 i~~g~---~i~l~G~~GsGKSTl~~~La~~-~~~g~i~i~~d 43 (191)
T 1zp6_A 6 DLGGN---ILLLSGHPGSGKSTIAEALANL-PGVPKVHFHSD 43 (191)
T ss_dssp CCTTE---EEEEEECTTSCHHHHHHHHHTC-SSSCEEEECTT
T ss_pred CCCCe---EEEEECCCCCCHHHHHHHHHhc-cCCCeEEEccc
Confidence 46677 9999999999999999999998 57788888764
No 135
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.02 E-value=3e-07 Score=85.84 Aligned_cols=58 Identities=19% Similarity=0.278 Sum_probs=39.9
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEE--EECCc
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVI--TMDNY 101 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I--~~D~y 101 (509)
+++++..+...+.+..++..++|+ +|+|+|+|||||||+++.|++.++..|.+ .+|+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~---~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGC---VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCE---EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CCCcccccccCHHHHHHhcCCCCe---EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 345666666666777777777888 99999999999999999999988433433 56554
No 136
>3n10_A Adenylate cyclase 2; CYTH domain, antiparallel barrel, product complex, cyclic AM; HET: CMP; 1.60A {Yersinia pestis} PDB: 3n0z_A* 3n0y_A* 2fjt_A
Probab=98.02 E-value=2.8e-05 Score=72.24 Aligned_cols=125 Identities=19% Similarity=0.285 Sum_probs=90.0
Q ss_pred eeeEEEeCCCCCccccccceeeeccC--ceEEEEeeecccCCCeEeccccceeeceeecccccccCceEEEEEEecccee
Q 010501 280 TYDIYLLPPGEDPDACQSYLRMRNRD--GKYNLMFEEWVTDSPFIISPRITFEVSVRLLGGLMALGYTIATILKRSSHIF 357 (509)
Q Consensus 280 ~~diyl~pp~~~~~~~~~~ir~r~~~--~~~~l~~~~~i~~~~f~~~P~~~f~v~~~~~~gl~~lgy~~~~~~~r~~~~~ 357 (509)
..|+|+..|+........++|.|..+ +...|-...+ ...+...+|--+++ ....-|.++|++.++.+...-++|
T Consensus 41 q~d~Yfd~p~~~l~~~~~~lRiR~~~~~~~~~lt~kg~-~~~~e~e~~v~~~~---~~~~~l~~lg~~~~~~~~k~R~~~ 116 (179)
T 3n10_A 41 EKDIYLDANGQDLAKQQISMVLREMNPSGIRLWIVKGP-GAERCEASNIEDVS---KVQSMLATLGYHPAFTIEKQRSIY 116 (179)
T ss_dssp EEEEEEECTTCTTGGGTCEEEEEEEETTCCEEEEEECS-SSSBEEEEECSCHH---HHHHHHHHTTCEEEEEEEEEEEEE
T ss_pred EEEEEEeCCChhHHhCCceEEEEecCCCceEEEEEcCC-ccccceeeccCCHH---HHHHHHHhCCCeEEEEEEEEEEEE
Confidence 45899999999998888999999875 4444433221 11111112211111 122225689999999999999999
Q ss_pred ecCcEEEEehhhhhcCcceEEEeccC---------hhHHHHHHhhhcCc-cCccchhHHHHH
Q 010501 358 YDDRVCVKTDWLEQLNRKYVQVQGRD---------RLYVKYVGEQLGLD-GSYVPRTYIEQI 409 (509)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~g~~---------~~~v~~~~~~l~~~-~~~~~~~y~~~~ 409 (509)
.-+.+.|.+|+.+.++ +|+.|-.-. ++.+.+++.+|||+ ..-+++||+|++
T Consensus 117 ~~~~~~v~lD~v~~lG-~f~EiE~e~~~~~~~~~~~~~~~~l~~~LGl~~~~~~~~sY~eLL 177 (179)
T 3n10_A 117 FVGKFHITVDHLTGLG-DFAEIAIMTDDATELDKLKAECRDFANTFGLQVDQQEPRSYRQLL 177 (179)
T ss_dssp EETTEEEEEEEETTTE-EEEEEEEEESCGGGHHHHHHHHHHHHHHHTCCGGGBCCSCHHHHH
T ss_pred EECCEEEEEEeccCCC-cEEEEEEEeCCCccHHHHHHHHHHHHHHcCcChhhcceecHHHHh
Confidence 9999999999999998 688887532 35688899999997 557899999986
No 137
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.00 E-value=3.5e-06 Score=75.23 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=26.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
+|+|.|++||||||+++.|++.++ ...+..|.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~-~~~i~~d~~ 35 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK-YPIIKGSSF 35 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC-CCEEECCCH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CeeecCccc
Confidence 799999999999999999998873 334555544
No 138
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.99 E-value=7e-07 Score=94.59 Aligned_cols=43 Identities=12% Similarity=0.137 Sum_probs=35.3
Q ss_pred EEEeCcEEEeeeeceeeecCCccEE--EEEECCCCCcHHHHHHHHHhhC
Q 010501 44 SFEKGFFIVIRACQLLAQKNHGIIL--VGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 44 sf~~g~~~iLk~IsL~i~~Ge~~iI--IgI~GpSGSGKTTLar~L~~ll 90 (509)
++.++... ++++++.+++|+ + ++|+|+||||||||+++|++..
T Consensus 22 ~~~y~~~~-L~~vsl~i~~Ge---i~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 22 HVGFDSLP-DQLVNKSVSQGF---CFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp CC-CC--C-HHHHHHSCC-CC---EEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred EEEECCee-cCCCceEecCCC---eeEEEEECCCCCCHHHHHHHHhCcc
Confidence 44455566 999999999999 9 9999999999999999999985
No 139
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.98 E-value=3.9e-05 Score=70.58 Aligned_cols=44 Identities=16% Similarity=0.252 Sum_probs=32.4
Q ss_pred eeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 55 ~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
++++....+. +|+|+|++||||||+++.|+..+.....+..|..
T Consensus 2 ~~~~~~~~~~---~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~ 45 (184)
T 1y63_A 2 PGSMEQPKGI---NILITGTPGTGKTSMAEMIAAELDGFQHLEVGKL 45 (184)
T ss_dssp ----CCCSSC---EEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHH
T ss_pred CcCcCCCCCC---EEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHH
Confidence 3566666677 9999999999999999999998334556666655
No 140
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=97.95 E-value=3.8e-06 Score=85.87 Aligned_cols=65 Identities=12% Similarity=0.092 Sum_probs=49.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCccCcc-----------cc--ccccCCCCCCCchhhHHHHHHhh
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYNDSS-----------RI--IDGNFDDPRLTDYDTLLENIRGL 130 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~~~~-----------r~--i~~~fq~p~~~d~~tl~e~L~~L 130 (509)
+-+++|+|||||||||++++|++.+ |..|.|.+++....+ +. +.+.++.....+..++.+++...
T Consensus 129 g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 129 PYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 3499999999999999999999998 666777776653221 12 23677888888888888888654
No 141
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.94 E-value=4.7e-05 Score=70.42 Aligned_cols=36 Identities=25% Similarity=0.334 Sum_probs=29.3
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
++.+|+|.|++||||||+++.|+..+ ....++.|++
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~-g~~~i~~d~~ 49 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY-SFVHLSAGDL 49 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS-SCEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc-CceEEeHHHH
Confidence 46699999999999999999999887 3456666654
No 142
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.92 E-value=1.1e-06 Score=92.79 Aligned_cols=46 Identities=22% Similarity=0.212 Sum_probs=35.8
Q ss_pred EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCc
Q 010501 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (509)
Q Consensus 51 ~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y 101 (509)
.+|+++ + ..+|+ +++|+||||||||||+++|.+.+ +..|.|.+.+.
T Consensus 157 ~~L~~l-~-~~~gg---ii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed 203 (418)
T 1p9r_A 157 DNFRRL-I-KRPHG---IILVTGPTGSGKSTTLYAGLQELNSSERNILTVED 203 (418)
T ss_dssp HHHHHH-H-TSSSE---EEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEES
T ss_pred HHHHHH-H-HhcCC---eEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecc
Confidence 355555 3 36778 99999999999999999999988 56676666543
No 143
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.88 E-value=9.1e-06 Score=73.67 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=27.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
+.+|+|.|++||||||+++.|+..++ ...+..|+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~-~~~i~~d~~ 40 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG-WVHLSAGDL 40 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC-CeEeeHHHH
Confidence 45899999999999999999998763 345555543
No 144
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.88 E-value=2.7e-06 Score=91.48 Aligned_cols=65 Identities=14% Similarity=0.073 Sum_probs=52.0
Q ss_pred CcEEEeeeece-eeecCCccEEEEEECCCCCcHHHHHHH--HHhhC-CCeeEEEECCccCc------cccccccCCCC
Q 010501 48 GFFIVIRACQL-LAQKNHGIILVGVAGPSGAGKTVFTEK--VLNFM-PSIAVITMDNYNDS------SRIIDGNFDDP 115 (509)
Q Consensus 48 g~~~iLk~IsL-~i~~Ge~~iIIgI~GpSGSGKTTLar~--L~~ll-p~~g~I~~D~y~~~------~r~i~~~fq~p 115 (509)
+...+|++|++ .+++|+ +++|+||||||||||+++ +++++ |+.|.|.+++.... .+.+++++|++
T Consensus 23 ~g~~~Ld~i~~G~i~~Ge---~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~ 97 (525)
T 1tf7_A 23 TMIEGFDDISHGGLPIGR---STLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKL 97 (525)
T ss_dssp CCCTTHHHHTTSSEETTS---EEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHH
T ss_pred CCchhHHHhcCCCCCCCe---EEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHh
Confidence 34568999999 999999 999999999999999999 67887 48899999876421 13456666654
No 145
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.87 E-value=1.9e-05 Score=74.43 Aligned_cols=143 Identities=17% Similarity=0.188 Sum_probs=69.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCccccccccCCCCCCCchhhHHHHHHhhccCcceeccccc-cCCC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGKAVQVPIYD-FKSS 146 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~r~i~~~fq~p~~~d~~tl~e~L~~L~~g~~i~~P~yD-~~~~ 146 (509)
.|.|+||||||||||++.|....|..-..++-.--...+.-...-.+........+.+ ...++.-++.-.|. ..-+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~---~i~~g~flE~~~~~g~~YG 79 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKS---MIKNNEFIEWAQFSGNYYG 79 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHH---HHHTTCEEEEEEETTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHH---HHHcCCEEEEEEEcCceee
Confidence 3668999999999999999988764211111100000110000111111122223333 33445545443321 1111
Q ss_pred CcCCCeeeeecCccEEEEecceeeeccccCCC---CeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHHHHHh
Q 010501 147 SRIGYRTLEVPSSRIVIIEGIYALSEKLRPLI---DLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQISET 217 (509)
Q Consensus 147 ~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lL---DlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~y~~~ 217 (509)
.....-...+.....+|+|...-....++... -+.||+..+....|.+|+ ..||...++.+..-+..
T Consensus 80 t~~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL----~~Rg~e~~e~i~~Rl~~ 149 (186)
T 1ex7_A 80 STVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRL----EGRGTETEESINKRLSA 149 (186)
T ss_dssp EEHHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHH----HHHCCSCHHHHHHHHHH
T ss_pred eecceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHH----HhcCCCCHHHHHHHHHH
Confidence 10000001123446777777666555454432 256899888765565554 56787766655554433
No 146
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.87 E-value=1e-05 Score=75.57 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=33.3
Q ss_pred eeecCCccEEEEEECCCCCcHHHHHHHHHhhC-C-------CeeEEEECCcc
Q 010501 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-------SIAVITMDNYN 102 (509)
Q Consensus 59 ~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p-------~~g~I~~D~y~ 102 (509)
-+++|+ +++|+||||||||||+++|++.+ + ..+.+.+++..
T Consensus 21 gi~~G~---~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 21 GIETQA---ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEESSE---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCCCc---EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 468899 99999999999999999999965 3 34477776643
No 147
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.85 E-value=2.5e-06 Score=92.16 Aligned_cols=47 Identities=21% Similarity=0.379 Sum_probs=42.2
Q ss_pred EeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCc
Q 010501 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (509)
Q Consensus 52 iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y 101 (509)
+++.+++.++.|+ +++|+||||||||||+++|++++ |..|.|.++|.
T Consensus 249 ~l~~l~~~v~~g~---~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~ 296 (511)
T 2oap_1 249 VLAYLWLAIEHKF---SAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDT 296 (511)
T ss_dssp HHHHHHHHHHTTC---CEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESS
T ss_pred HHHHHHHHHhCCC---EEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCc
Confidence 5677888899999 99999999999999999999999 67899988875
No 148
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.84 E-value=6.4e-06 Score=75.47 Aligned_cols=34 Identities=18% Similarity=0.297 Sum_probs=27.9
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
.+|+|.|++||||||+++.|+..+. ...+..|++
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~-~~~i~~d~~ 46 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG-FTHLSTGEL 46 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT-CEEEEHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC-CeEEcHHHH
Confidence 3999999999999999999999873 445666654
No 149
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.82 E-value=1.1e-05 Score=76.43 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=31.1
Q ss_pred eeecCCccEEEEEECCCCCcHHHHHHHHH--hh-CCCeeEEEECC
Q 010501 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVL--NF-MPSIAVITMDN 100 (509)
Q Consensus 59 ~i~~Ge~~iIIgI~GpSGSGKTTLar~L~--~l-lp~~g~I~~D~ 100 (509)
-+++|+ +++|+||||||||||+++|+ +. .+..+.+.+++
T Consensus 26 gi~~G~---~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 26 GFPEGT---TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTC---EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCc---EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 468999 99999999999999999999 55 34445555544
No 150
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.81 E-value=4.4e-05 Score=70.71 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=29.1
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
..+.+|+|.|++||||||+++.|+..+. ...+..|+.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~-~~~i~~d~~ 54 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLG-IPQISTGEL 54 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHT-CCEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC-CcEEehhHH
Confidence 4456999999999999999999998773 335666554
No 151
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.80 E-value=7.6e-06 Score=81.99 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=36.4
Q ss_pred eecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEE---CCccCcc-------ccccccCCCCCCC
Q 010501 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM---DNYNDSS-------RIIDGNFDDPRLT 118 (509)
Q Consensus 60 i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~---D~y~~~~-------r~i~~~fq~p~~~ 118 (509)
+..|+ +++|+||||||||||+++|+++. |..|.|.+ +|.+... +.+++++|.|...
T Consensus 166 ~l~ge---iv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~ 232 (301)
T 1u0l_A 166 YLKGK---ISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFA 232 (301)
T ss_dssp HHSSS---EEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSST
T ss_pred HhcCC---eEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCC
Confidence 34678 99999999999999999999998 78999998 6654321 2367788887643
No 152
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=97.80 E-value=1.1e-06 Score=99.12 Aligned_cols=36 Identities=25% Similarity=0.324 Sum_probs=32.1
Q ss_pred cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 49 ~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
...++++++|. |+ +++|+||||||||||++.|+++.
T Consensus 565 ~~~vl~disl~---g~---i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 565 TEFVPNDLEMA---HE---LVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCCCCEEEEES---SC---EEEEESCSSSSHHHHHHHHHHHH
T ss_pred CceEeeeccCC---Cc---EEEEECCCCCChHHHHHHHHhhh
Confidence 35678899888 88 99999999999999999999875
No 153
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.74 E-value=1.1e-05 Score=81.01 Aligned_cols=54 Identities=17% Similarity=0.167 Sum_probs=38.2
Q ss_pred ecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEE---CCccCcc-------ccccccCCCCCCC
Q 010501 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM---DNYNDSS-------RIIDGNFDDPRLT 118 (509)
Q Consensus 61 ~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~---D~y~~~~-------r~i~~~fq~p~~~ 118 (509)
..|+ +++|+|+||||||||+++|. .. |..|.|.. +|.+.+. +..++++|.|...
T Consensus 163 l~G~---i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~ 227 (302)
T 2yv5_A 163 LEGF---ICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS 227 (302)
T ss_dssp TTTC---EEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCS
T ss_pred ccCc---EEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcC
Confidence 3567 99999999999999999999 77 78899988 7664332 1367888888643
No 154
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.74 E-value=1.3e-05 Score=73.46 Aligned_cols=60 Identities=13% Similarity=0.036 Sum_probs=36.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCcc-ccccccCCCCCCCchhhHHHHHHh
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDSS-RIIDGNFDDPRLTDYDTLLENIRG 129 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~~-r~i~~~fq~p~~~d~~tl~e~L~~ 129 (509)
+++|+||||||||||++.|++.. .|.+.+++..... ...++.++........++.+++..
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~--~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 64 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL--DNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITD 64 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS--SSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHhccc--CCeEEEcccchhhhhccccccCccchhHHHHHHHHHHH
Confidence 89999999999999999999854 4555555432211 123344443322233455555544
No 155
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.72 E-value=3.3e-06 Score=90.81 Aligned_cols=109 Identities=15% Similarity=0.006 Sum_probs=60.3
Q ss_pred ceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCee--EEEECCccCccccccccCCCCCCCchhhHHHHHHhhccCc
Q 010501 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIA--VITMDNYNDSSRIIDGNFDDPRLTDYDTLLENIRGLKEGK 134 (509)
Q Consensus 57 sL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g--~I~~D~y~~~~r~i~~~fq~p~~~d~~tl~e~L~~L~~g~ 134 (509)
+..+.+|+ +++|.|+||||||||++.+++..+..| .+.+....... .+....... -++ +.+... .+.
T Consensus 275 ~g~i~~G~---i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~-~l~~~~~~~-g~~---~~~~~~---~g~ 343 (525)
T 1tf7_A 275 GGGFFKDS---IILATGATGTGKTLLVSRFVENACANKERAILFAYEESRA-QLLRNAYSW-GMD---FEEMER---QNL 343 (525)
T ss_dssp TSSEESSC---EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHH-HHHHHHHTT-SCC---HHHHHH---TTS
T ss_pred CCCCCCCc---EEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHH-HHHHHHHHc-CCC---HHHHHh---CCC
Confidence 44789999 999999999999999999999873222 23332211100 000000000 011 111110 011
Q ss_pred ceeccccccCCCCcCCCeeeeecCccEEEEecceeeeccccCCCCe
Q 010501 135 AVQVPIYDFKSSSRIGYRTLEVPSSRIVIIEGIYALSEKLRPLIDL 180 (509)
Q Consensus 135 ~i~~P~yD~~~~~rsgg~~~~v~~a~VLIVEGi~aL~dElr~lLDl 180 (509)
....+......++++.+++..+.++..++.+++.| +...+|.
T Consensus 344 ---~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~ 385 (525)
T 1tf7_A 344 ---LKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALAR 385 (525)
T ss_dssp ---EEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTS
T ss_pred ---EEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHh
Confidence 11223334556777777777777766677777777 7776776
No 156
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.70 E-value=6.4e-06 Score=85.06 Aligned_cols=29 Identities=31% Similarity=0.551 Sum_probs=26.6
Q ss_pred eeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 59 ~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
...+++ +++|+||||||||||+++|++.+
T Consensus 119 ~~~~~g---~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 119 SDVPRG---LVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp HHCSSE---EEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhCCCC---EEEEECCCCCCHHHHHHHHHhcc
Confidence 556777 99999999999999999999998
No 157
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.68 E-value=2.2e-05 Score=71.63 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=27.4
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
.+|+|.|++||||||+++.|+..++ ...+..|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~-~~~i~~d~~ 43 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYG-YTHLSTGDL 43 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC-CeEEcHHHH
Confidence 4999999999999999999998773 345655553
No 158
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=97.67 E-value=8.9e-06 Score=93.66 Aligned_cols=36 Identities=14% Similarity=0.237 Sum_probs=32.5
Q ss_pred cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHH
Q 010501 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVL 87 (509)
Q Consensus 49 ~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~ 87 (509)
...++++++|.+..|+ +++|+||||||||||++.++
T Consensus 648 ~~~v~ndisl~~~~g~---i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQM---FHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CCCCCEEEEEETTTBC---EEEEECCTTSSHHHHHHHHH
T ss_pred ceeecccceeecCCCe---EEEEECCCCCCHHHHHHHHH
Confidence 3457889999999999 99999999999999999994
No 159
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.67 E-value=6.1e-06 Score=77.73 Aligned_cols=46 Identities=26% Similarity=0.394 Sum_probs=35.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCccCc-----cccccccCCC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYNDS-----SRIIDGNFDD 114 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~~~-----~r~i~~~fq~ 114 (509)
+++|+||||||||||+++|++.++..| +.++++... .+.+++.+++
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~G-i~~~g~~~~~~~~~~~~ig~~~~~ 53 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSG-VPVDGFYTEEVRQGGRRIGFDVVT 53 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTT-CCCEEEECCEEETTSSEEEEEEEE
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCC-EEEcCEecchhHhhhceEEEEEEe
Confidence 899999999999999999999986556 777776432 2334555554
No 160
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.66 E-value=2.7e-05 Score=78.43 Aligned_cols=36 Identities=11% Similarity=-0.010 Sum_probs=29.8
Q ss_pred CCCcCCCeeeeecCccEEE----EecceeeeccccCCCCe
Q 010501 145 SSSRIGYRTLEVPSSRIVI----IEGIYALSEKLRPLIDL 180 (509)
Q Consensus 145 ~~~rsgg~~~~v~~a~VLI----VEGi~aL~dElr~lLDl 180 (509)
....|+|+.+++..++++. -++.+++.|||...||.
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~ 256 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDD 256 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCH
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCH
Confidence 3567888999998888876 36688899999999997
No 161
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.64 E-value=1.1e-05 Score=79.66 Aligned_cols=41 Identities=22% Similarity=0.229 Sum_probs=36.5
Q ss_pred EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCee
Q 010501 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA 94 (509)
Q Consensus 51 ~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g 94 (509)
.+|+++++.+++|+ +++|+|+||||||||++.|++.+ +..|
T Consensus 23 ~~Ld~i~~~l~~G~---~~~i~G~~G~GKTTl~~~ia~~~~~~~G 64 (296)
T 1cr0_A 23 TGINDKTLGARGGE---VIMVTSGSGMGKSTFVRQQALQWGTAMG 64 (296)
T ss_dssp TTHHHHHCSBCTTC---EEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHhcCCCCCe---EEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence 46888999999999 99999999999999999999988 4434
No 162
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.63 E-value=8.9e-06 Score=82.53 Aligned_cols=59 Identities=15% Similarity=0.141 Sum_probs=34.8
Q ss_pred eeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEE---CCccCcc-----c-cccccCCCCCCCc
Q 010501 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM---DNYNDSS-----R-IIDGNFDDPRLTD 119 (509)
Q Consensus 58 L~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~---D~y~~~~-----r-~i~~~fq~p~~~d 119 (509)
+.+.+|+ +++|+|+||||||||+++|.+.. +..|.|.. +|.+.+. + ..++++|.|....
T Consensus 168 ~~~~~G~---~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~ 236 (307)
T 1t9h_A 168 IPHFQDK---TTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSS 236 (307)
T ss_dssp GGGGTTS---EEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSS
T ss_pred HhhcCCC---EEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccc
Confidence 4556788 99999999999999999999987 67888887 5543321 1 1567888886654
No 163
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=97.61 E-value=2e-05 Score=73.81 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=23.4
Q ss_pred ecCCccEEEEEECCCCCcHHHHHHHHHhhCC
Q 010501 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (509)
Q Consensus 61 ~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp 91 (509)
++|. +++|+||||||||||+++|.+.++
T Consensus 2 ~~g~---~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 2 AGPR---PVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ---C---CEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCC---EEEEECCCCCCHHHHHHHHHhhCc
Confidence 3466 899999999999999999999875
No 164
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.61 E-value=4.7e-06 Score=80.19 Aligned_cols=63 Identities=14% Similarity=0.244 Sum_probs=39.8
Q ss_pred EEEEEECCCCCcHHHHHHHHH---hhC-CCeeEEEECCccCcc---ccccccCCCCCCCchhhHHHHHHh
Q 010501 67 ILVGVAGPSGAGKTVFTEKVL---NFM-PSIAVITMDNYNDSS---RIIDGNFDDPRLTDYDTLLENIRG 129 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~---~ll-p~~g~I~~D~y~~~~---r~i~~~fq~p~~~d~~tl~e~L~~ 129 (509)
.+|+|+||||||||||+++|+ +.. ++.|.+..++..... ..+...++++..++..++.+++..
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMS 97 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 399999999999999999999 554 344555444322110 112334455555666677777654
No 165
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.53 E-value=0.0001 Score=72.48 Aligned_cols=36 Identities=22% Similarity=0.412 Sum_probs=28.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
+.+|.|.|++||||||+++.|+..+.....|+.|.+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~ 37 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY 37 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHH
Confidence 358999999999999999999986545556666644
No 166
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.53 E-value=2e-05 Score=73.15 Aligned_cols=35 Identities=20% Similarity=0.476 Sum_probs=29.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC-CC---eeEEEECCcc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM-PS---IAVITMDNYN 102 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll-p~---~g~I~~D~y~ 102 (509)
+++|+|+||||||||++.|++++ |. .|.|.+|+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 89999999999999999999998 55 8999988754
No 167
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.48 E-value=6.4e-05 Score=70.68 Aligned_cols=28 Identities=32% Similarity=0.516 Sum_probs=25.4
Q ss_pred ecCCccEEEEEECCCCCcHHHHHHHHHhhCC
Q 010501 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (509)
Q Consensus 61 ~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp 91 (509)
++|. +|+|+||||||||||++.|++.++
T Consensus 6 ~~g~---~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGL---LIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCC---EEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCc---EEEEECcCCCCHHHHHHHHHhhCC
Confidence 4567 999999999999999999999985
No 168
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.46 E-value=3.5e-05 Score=78.81 Aligned_cols=38 Identities=18% Similarity=0.263 Sum_probs=33.5
Q ss_pred eeeeceeeec--CCccEEEEEECCCCCcHHHHHHHHHhhC-CCe
Q 010501 53 IRACQLLAQK--NHGIILVGVAGPSGAGKTVFTEKVLNFM-PSI 93 (509)
Q Consensus 53 Lk~IsL~i~~--Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~ 93 (509)
...|++.+.+ ++ .++|+|+||||||||+++|++++ |..
T Consensus 158 ~~~v~~~v~~~lg~---k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 158 WKFIPKEARPFFAK---TVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp GGGSCTTTGGGTCE---EEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hhhCCHHHHHhhhC---eEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 3568888888 99 99999999999999999999999 444
No 169
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.44 E-value=6e-05 Score=78.10 Aligned_cols=69 Identities=13% Similarity=0.115 Sum_probs=44.4
Q ss_pred eeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC--CCeeEEEEC-CccC---ccccccccCCCCCCCchhhHHH
Q 010501 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMD-NYND---SSRIIDGNFDDPRLTDYDTLLE 125 (509)
Q Consensus 53 Lk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll--p~~g~I~~D-~y~~---~~r~i~~~fq~p~~~d~~tl~e 125 (509)
++++++. ..|+ +++|+|+||||||||+++|++.. +..|.|..+ +... ....++++++++..+|..++.+
T Consensus 206 l~~L~~~-~~G~---~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e 280 (358)
T 2rcn_A 206 LKPLEEA-LTGR---ISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVRE 280 (358)
T ss_dssp HHHHHHH-HTTS---EEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHT
T ss_pred HHHHHHh-cCCC---EEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHH
Confidence 3445544 3578 99999999999999999999987 567888876 4321 1234567777776777666654
No 170
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.44 E-value=2.2e-05 Score=81.30 Aligned_cols=37 Identities=24% Similarity=0.429 Sum_probs=31.5
Q ss_pred eecCCccEEEEEECCCCCcHHHHHHHHHhhC-CC-eeEEEEC
Q 010501 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PS-IAVITMD 99 (509)
Q Consensus 60 i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~-~g~I~~D 99 (509)
+++|+ +++|+||||||||||+++|++.+ |. .|.|...
T Consensus 133 ~~~g~---~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~ 171 (372)
T 2ewv_A 133 HRKMG---LILVTGPTGSGKSTTIASMIDYINQTKSYHIITI 171 (372)
T ss_dssp TSSSE---EEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred hcCCC---EEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEe
Confidence 57788 99999999999999999999998 44 6777543
No 171
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.43 E-value=6.5e-05 Score=67.44 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=22.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp 91 (509)
+|+|+|+|||||||+++.|++.++
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 899999999999999999999883
No 172
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.42 E-value=5.1e-05 Score=75.02 Aligned_cols=46 Identities=28% Similarity=0.361 Sum_probs=37.2
Q ss_pred EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 50 ~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
..+++++++.++.| ++|.||||||||||+++|++.+. .+.+.+++.
T Consensus 33 ~~~l~~~~l~~~~G-----vlL~Gp~GtGKTtLakala~~~~-~~~i~i~g~ 78 (274)
T 2x8a_A 33 PDQFKALGLVTPAG-----VLLAGPPGCGKTLLAKAVANESG-LNFISVKGP 78 (274)
T ss_dssp HHHHHHTTCCCCSE-----EEEESSTTSCHHHHHHHHHHHTT-CEEEEEETT
T ss_pred HHHHHHcCCCCCCe-----EEEECCCCCcHHHHHHHHHHHcC-CCEEEEEcH
Confidence 34567778777765 89999999999999999999983 367777764
No 173
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.41 E-value=1.6e-05 Score=73.29 Aligned_cols=44 Identities=27% Similarity=0.213 Sum_probs=31.5
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
++++|.++ ..++++ +.+.+|. .|+|+|+||||||||++.|.+..
T Consensus 7 ~~~~~~~~-~~~l~~--~~~~~~~---~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 7 QQTHFVMS-APDIRH--LPSDTGI---EVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp ----CEEE-ESSGGG--SSCSCSE---EEEEEECTTSSHHHHHTTTCCC-
T ss_pred hhhhheee-cCCHhH--CCCCCCc---EEEEECCCCCCHHHHHHHHhCCC
Confidence 45566554 345665 6777777 99999999999999999998764
No 174
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.38 E-value=5.8e-05 Score=68.69 Aligned_cols=30 Identities=20% Similarity=0.328 Sum_probs=26.5
Q ss_pred eeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 58 LLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 58 L~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+.+.+|+ .++|.||||+|||||+++|++.+
T Consensus 33 ~~~~~g~---~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 33 FNPEEGK---GLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCGGGCC---EEEECCSSSSSHHHHHHHHHHHH
T ss_pred ccccCCC---EEEEECCCCCCHHHHHHHHHHHH
Confidence 4456678 99999999999999999999987
No 175
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.37 E-value=5.3e-06 Score=80.65 Aligned_cols=35 Identities=20% Similarity=0.468 Sum_probs=27.2
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCcc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNYN 102 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y~ 102 (509)
+++|+||||||||||+++|++++ |..|.|.+++..
T Consensus 29 ~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~ 64 (227)
T 1qhl_A 29 VTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (227)
T ss_dssp HHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------
T ss_pred EEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEE
Confidence 89999999999999999999998 778888777653
No 176
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.36 E-value=8.9e-05 Score=67.32 Aligned_cols=33 Identities=18% Similarity=0.409 Sum_probs=26.9
Q ss_pred eeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 54 k~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+++++.+.+ . +.+|+|+||||||||+++|...+
T Consensus 18 ~~~~~~~~~-g---~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 18 KKVVIPFSK-G---FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp SCEEEECCS-S---EEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccEEEecCC-C---cEEEECCCCCCHHHHHHHHHHHH
Confidence 444555553 3 89999999999999999999988
No 177
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.33 E-value=9e-05 Score=68.81 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=30.7
Q ss_pred Eeeeece-eeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 52 VIRACQL-LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 52 iLk~IsL-~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.|+.+.. -+++|+ +++|+||||||||||++.|++.+
T Consensus 11 ~Ld~~~~ggi~~G~---~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 11 DFDKLIQGGIPQGF---FIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp HHHGGGTTSEETTC---EEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcCCCcCCC---EEEEEcCCCCCHHHHHHHHHHHH
Confidence 4555555 678999 99999999999999999999776
No 178
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.32 E-value=0.00019 Score=67.43 Aligned_cols=40 Identities=15% Similarity=0.212 Sum_probs=32.9
Q ss_pred eecCCccEEEEEECCCCCcHHHHHHHHHhh--CC------CeeEEEECCcc
Q 010501 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNF--MP------SIAVITMDNYN 102 (509)
Q Consensus 60 i~~Ge~~iIIgI~GpSGSGKTTLar~L~~l--lp------~~g~I~~D~y~ 102 (509)
+++|+ +++|+||||||||||++.|++. ++ ..+.+.+++..
T Consensus 21 i~~G~---~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 21 IETGS---ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EETTS---EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcCCe---EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 57899 9999999999999999999984 32 45777776543
No 179
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=97.28 E-value=0.00012 Score=83.11 Aligned_cols=39 Identities=13% Similarity=0.255 Sum_probs=34.5
Q ss_pred CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 48 g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+...++++++|. ++|+ +++|+||||||||||++.|+++.
T Consensus 593 ~~~~vlndisl~-~~g~---i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQRR---MLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSCCCCEEEEEC-SSSC---EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceeeeccccc-CCCc---EEEEECCCCCChHHHHHHHHHHH
Confidence 345678999999 8888 99999999999999999999874
No 180
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=97.26 E-value=8.2e-05 Score=85.56 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=34.1
Q ss_pred cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 49 ~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
...++++++|.++.|+ +++|+||||||||||++.++..
T Consensus 659 ~~~V~ndvsl~~~~g~---i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 659 DQYVPNNTDLSEDSER---VMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp SSSCCEEEEECTTSCC---EEEEESCCCHHHHHHHHHHHHH
T ss_pred CceecccccccCCCCe---EEEEECCCCCchHHHHHHHHHH
Confidence 3557889999999999 9999999999999999998765
No 181
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.26 E-value=0.0002 Score=72.67 Aligned_cols=34 Identities=21% Similarity=0.331 Sum_probs=30.2
Q ss_pred eeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 54 k~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+++++...+++ +|+|+|++||||||++..|++.+
T Consensus 96 ~~l~~~~~~~~---vI~ivG~~G~GKTT~~~~LA~~l 129 (320)
T 1zu4_A 96 YRIDFKENRLN---IFMLVGVNGTGKTTSLAKMANYY 129 (320)
T ss_dssp CCCCCCTTSCE---EEEEESSTTSSHHHHHHHHHHHH
T ss_pred cCccccCCCCe---EEEEECCCCCCHHHHHHHHHHHH
Confidence 56777767677 99999999999999999999988
No 182
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.23 E-value=9.3e-05 Score=71.06 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=35.9
Q ss_pred EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 51 ~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
.+++++++.+++| ++|.||||||||||+++|++.+. .+.+.+++.
T Consensus 39 ~~~~~~~~~~~~g-----~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~~ 83 (254)
T 1ixz_A 39 SRFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEAR-VPFITASGS 83 (254)
T ss_dssp HHHHHTTCCCCSE-----EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHH
T ss_pred HHHHHcCCCCCCe-----EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeHH
Confidence 4567777777754 78999999999999999999984 667766653
No 183
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.18 E-value=8.5e-05 Score=77.33 Aligned_cols=38 Identities=18% Similarity=0.301 Sum_probs=34.9
Q ss_pred EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 50 ~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
..+++++++.++.|+ +++|.||+|||||||+++|++.+
T Consensus 156 ~~~l~~~~~~i~~~~---~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 156 YDFLKCMVYNIPKKR---YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp HHHHHHHHHCCTTCC---EEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHhcccccCCCC---EEEEECCCCCCHHHHHHHHHhhc
Confidence 357888899999999 99999999999999999999976
No 184
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=97.18 E-value=0.00018 Score=83.71 Aligned_cols=39 Identities=18% Similarity=0.251 Sum_probs=34.5
Q ss_pred CcEEEeeeeceeeec-------CCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 48 GFFIVIRACQLLAQK-------NHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 48 g~~~iLk~IsL~i~~-------Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+...++++++|.+.+ |+ +++|+||||||||||++.+ +++
T Consensus 767 ~~~~v~ndi~l~~~~~~~~~~~g~---i~~ItGpNgsGKSTlLr~i-Gl~ 812 (1022)
T 2o8b_B 767 GDDFIPNDILIGCEEEEQENGKAY---CVLVTGPNMGGKSTLMRQA-GLL 812 (1022)
T ss_dssp CCCCCCEEEEESCCCSCC---CCC---EEEEECCTTSSHHHHHHHH-HHH
T ss_pred CCceEeeeeeeccccccccCCCCc---EEEEECCCCCChHHHHHHH-HHH
Confidence 456789999998876 78 9999999999999999999 776
No 185
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.17 E-value=1.8e-05 Score=80.11 Aligned_cols=49 Identities=24% Similarity=0.210 Sum_probs=37.7
Q ss_pred eeEEEeCcEEEeeeeceeeecC----CccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 42 TLSFEKGFFIVIRACQLLAQKN----HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 42 ~lsf~~g~~~iLk~IsL~i~~G----e~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+++..+|...+++++++.+..+ +.+-.++|.||||+|||||+++|++.+
T Consensus 23 ~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 23 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred cHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4444456666788888887765 222389999999999999999999987
No 186
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.16 E-value=0.00011 Score=66.68 Aligned_cols=34 Identities=32% Similarity=0.443 Sum_probs=27.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCC--CeeEEEECCc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNY 101 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp--~~g~I~~D~y 101 (509)
+|+|.|++||||||+++.|++.++ ....+.+|+.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 999999999999999999999872 2236666654
No 187
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.15 E-value=0.00012 Score=71.49 Aligned_cols=46 Identities=24% Similarity=0.232 Sum_probs=36.5
Q ss_pred EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 50 ~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
..+++++++.++.| ++|.||||||||||+++|++.+. .+.+.+++.
T Consensus 62 ~~~l~~~~~~~~~g-----vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~~ 107 (278)
T 1iy2_A 62 PSRFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEAR-VPFITASGS 107 (278)
T ss_dssp HHHHHHTTCCCCCE-----EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEHH
T ss_pred HHHHHHcCCCCCCe-----EEEECCCcChHHHHHHHHHHHcC-CCEEEecHH
Confidence 34567777777754 78999999999999999999984 667776643
No 188
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.13 E-value=8.8e-05 Score=76.02 Aligned_cols=57 Identities=19% Similarity=0.173 Sum_probs=42.0
Q ss_pred ceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC--C-Ce----eE-EEECCccCc-cccccccCCCCC
Q 010501 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--P-SI----AV-ITMDNYNDS-SRIIDGNFDDPR 116 (509)
Q Consensus 57 sL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll--p-~~----g~-I~~D~y~~~-~r~i~~~fq~p~ 116 (509)
..-++.|+ +++|+||||||||||++.|++.. + .. |. |.+|+.... ...+.++++.+.
T Consensus 125 ~ggi~~G~---i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~ 190 (349)
T 1pzn_A 125 GGGIETQA---ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRG 190 (349)
T ss_dssp TSSEESSE---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTT
T ss_pred cCCCCCCe---EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcC
Confidence 56789999 99999999999999999999987 3 22 44 788775432 233455555544
No 189
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.13 E-value=0.00023 Score=64.09 Aligned_cols=35 Identities=20% Similarity=0.317 Sum_probs=27.6
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCCC-eeEEEECCc
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMPS-IAVITMDNY 101 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp~-~g~I~~D~y 101 (509)
.+|.|+|++||||||+++.|+..++. .-.+..|.+
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 38999999999999999999999842 223446655
No 190
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.13 E-value=0.00015 Score=65.23 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=24.6
Q ss_pred cCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 62 ~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+|+ .++|.||+|||||||++++++.+
T Consensus 35 ~g~---~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 35 HGQ---FIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CCS---EEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCC---EEEEECCCCCCHHHHHHHHHHHH
Confidence 678 99999999999999999999987
No 191
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.12 E-value=0.00028 Score=67.18 Aligned_cols=28 Identities=25% Similarity=0.434 Sum_probs=25.1
Q ss_pred ecCCccEEEEEECCCCCcHHHHHHHHHhhCC
Q 010501 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (509)
Q Consensus 61 ~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp 91 (509)
..|. +|+|+||||||||||+++|.+.++
T Consensus 17 ~~g~---~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 17 QGRK---TLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CSCC---EEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCC---EEEEECcCCCCHHHHHHHHHhhCC
Confidence 3566 999999999999999999999885
No 192
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.10 E-value=0.0004 Score=63.73 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=23.9
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+..+.|+|+|+||||||||++.+.+..
T Consensus 27 ~~~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 27 DYLFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCC
Confidence 345789999999999999999999876
No 193
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.07 E-value=0.00012 Score=77.15 Aligned_cols=41 Identities=22% Similarity=0.157 Sum_probs=33.1
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.++++.++...++++++|.+ +|+|+||||||||++.|++..
T Consensus 15 ~~l~~~y~~~~vl~~vsf~I---------~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 15 ANLPNQVYRKSVKRGFEFTL---------MVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp CCCCCCTTTTTCC-CCCEEE---------EEECCTTSSHHHHHHHHTTCC
T ss_pred EecceeECCEEEecCCCEEE---------EEECCCCCcHHHHHHHHhCCC
Confidence 45556666667888888765 999999999999999999986
No 194
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.07 E-value=0.00035 Score=68.02 Aligned_cols=33 Identities=24% Similarity=0.330 Sum_probs=28.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
+|.|+||+|||||||++.|++.++ .-.++.|++
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~-~~~i~~D~~ 35 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG-WPVVALDRV 35 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC-CCEEECCSG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC-CeEEeccHH
Confidence 789999999999999999998873 457888886
No 195
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.06 E-value=0.00015 Score=73.01 Aligned_cols=35 Identities=26% Similarity=0.373 Sum_probs=28.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhC---------CCeeEEEECCc
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFM---------PSIAVITMDNY 101 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~ll---------p~~g~I~~D~y 101 (509)
.+++|+|+||||||||++.|.+.. ++.|.|.+|+.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~ 48 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQ 48 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHH
Confidence 489999999999999999999875 35666666654
No 196
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.04 E-value=0.00035 Score=62.50 Aligned_cols=35 Identities=20% Similarity=0.352 Sum_probs=26.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHh-hCCCeeEEEECCc
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLN-FMPSIAVITMDNY 101 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~-llp~~g~I~~D~y 101 (509)
|.+|.|.|++||||||+++.|+. .+ ....|+.|.+
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~-~~~~i~~d~~ 37 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNP-GFYNINRDDY 37 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHST-TEEEECHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcC-CcEEecHHHH
Confidence 45899999999999999999998 34 3344554544
No 197
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.02 E-value=0.0016 Score=61.32 Aligned_cols=24 Identities=17% Similarity=0.427 Sum_probs=22.9
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+|+|.|+.||||||+++.|+..+
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~l 30 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHY 30 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHh
Confidence 499999999999999999999988
No 198
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=96.97 E-value=0.00032 Score=73.94 Aligned_cols=35 Identities=23% Similarity=0.169 Sum_probs=32.4
Q ss_pred eeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 53 Lk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.++++|.++.+. .|+|+|+||||||||+++|++..
T Consensus 147 ~~~i~lelk~g~---~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 147 KRRLRLELMLIA---DVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEEEECCSC---SEEEECCGGGCHHHHHHHHCSSC
T ss_pred EeeeeeEEcCCC---EEEEECCCCCcHHHHHHHHHcCC
Confidence 468999999999 99999999999999999998874
No 199
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.96 E-value=0.00045 Score=63.88 Aligned_cols=37 Identities=24% Similarity=0.212 Sum_probs=29.5
Q ss_pred eeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEEC
Q 010501 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (509)
Q Consensus 59 ~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D 99 (509)
-+++|+ +++|+|+||||||||++.|++ .+..+.+.++
T Consensus 16 gi~~G~---~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~ 52 (220)
T 2cvh_A 16 GFAPGV---LTQVYGPYASGKTTLALQTGL-LSGKKVAYVD 52 (220)
T ss_dssp SBCTTS---EEEEECSTTSSHHHHHHHHHH-HHCSEEEEEE
T ss_pred CCcCCE---EEEEECCCCCCHHHHHHHHHH-HcCCcEEEEE
Confidence 357899 999999999999999999998 3234455544
No 200
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=96.91 E-value=0.0012 Score=63.76 Aligned_cols=25 Identities=12% Similarity=0.327 Sum_probs=23.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
..+|+|.|+.||||||+++.|+..+
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~l 38 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEEL 38 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHc
Confidence 3599999999999999999999987
No 201
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=96.91 E-value=0.00047 Score=66.30 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=26.5
Q ss_pred eeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC
Q 010501 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (509)
Q Consensus 53 Lk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp 91 (509)
|.++++.+....+..+|.|.|++||||||+++.|++.++
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 566666666333344999999999999999999999884
No 202
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.84 E-value=0.00055 Score=62.00 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=22.1
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+|+|.|++||||||+++.|+..+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 389999999999999999999876
No 203
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.83 E-value=0.00035 Score=70.58 Aligned_cols=39 Identities=18% Similarity=0.291 Sum_probs=28.9
Q ss_pred ceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEE
Q 010501 57 QLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITM 98 (509)
Q Consensus 57 sL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~ 98 (509)
++....++ +|+|+|+|||||||++..|++.+ +..+.+.+
T Consensus 98 ~~~~~~~~---vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~l 137 (306)
T 1vma_A 98 NVPPEPPF---VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVL 137 (306)
T ss_dssp CCCSSSCE---EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred cccCCCCe---EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEE
Confidence 33334455 99999999999999999999988 33333433
No 204
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.83 E-value=0.00061 Score=65.99 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=25.5
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHhhCC
Q 010501 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (509)
Q Consensus 63 Ge~~iIIgI~GpSGSGKTTLar~L~~llp 91 (509)
...+.+|.|+|++||||||+++.|++.++
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34466999999999999999999999884
No 205
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.81 E-value=0.0004 Score=75.72 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=32.3
Q ss_pred eeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCee-EE-EECCc
Q 010501 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIA-VI-TMDNY 101 (509)
Q Consensus 59 ~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g-~I-~~D~y 101 (509)
.+++|+ +|+|+|+||||||||+++|++.+ +..| .+ .+|+.
T Consensus 365 ~~~~G~---iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD 407 (552)
T 3cr8_A 365 RERQGF---TVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGD 407 (552)
T ss_dssp GGGSCE---EEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSH
T ss_pred ccccce---EEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCc
Confidence 455677 99999999999999999999998 5554 45 36664
No 206
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.81 E-value=0.00052 Score=61.99 Aligned_cols=25 Identities=24% Similarity=0.363 Sum_probs=22.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMP 91 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp 91 (509)
.+|.|.|++||||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3899999999999999999998773
No 207
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.79 E-value=0.00046 Score=62.60 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=26.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
+|.|+|++||||||+++.|+..+ +...+..|.+
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l-~~~~i~~d~~ 39 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT-KRILYDSDKE 39 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-CCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCCEEEChHH
Confidence 78899999999999999999887 3345555554
No 208
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=96.78 E-value=0.00077 Score=69.34 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=27.3
Q ss_pred EeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 52 iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.++++++.++. . +++|+|||||||||++++|+-.+
T Consensus 13 ~~~~~~i~~~~-g---~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 13 GLKNVDIEFQS-G---ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp TEEEEEEECCS-E---EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CccceEEecCC-C---eEEEECCCCCCHHHHHHHHHHHh
Confidence 34556666653 2 67899999999999999998665
No 209
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.78 E-value=0.001 Score=60.99 Aligned_cols=25 Identities=24% Similarity=0.326 Sum_probs=22.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+.|+|+|++|||||||++.|.+..
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC
Confidence 4689999999999999999999874
No 210
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.78 E-value=0.00062 Score=67.70 Aligned_cols=29 Identities=17% Similarity=0.242 Sum_probs=25.3
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHhhCC
Q 010501 63 NHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (509)
Q Consensus 63 Ge~~iIIgI~GpSGSGKTTLar~L~~llp 91 (509)
...+.+|.|+|||||||||+++.|+..++
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34467999999999999999999998874
No 211
>2aca_A Putative adenylate cyclase; NESG, VPR19, Q87NV8, structural genomics, PSI, protein structure initiative; 2.25A {Vibrio parahaemolyticus} SCOP: d.63.1.2
Probab=96.76 E-value=0.0026 Score=59.73 Aligned_cols=142 Identities=14% Similarity=0.206 Sum_probs=98.7
Q ss_pred HHHHHHHhccccc---ccccceeeEEEeCCCCCccccccceeeeccC--ceEEEEeeecccCCCeEeccccceeeceeec
Q 010501 262 VDEIKAVMSKEHT---ETTEETYDIYLLPPGEDPDACQSYLRMRNRD--GKYNLMFEEWVTDSPFIISPRITFEVSVRLL 336 (509)
Q Consensus 262 ~~~i~~~l~~~~~---~~~~~~~diyl~pp~~~~~~~~~~ir~r~~~--~~~~l~~~~~i~~~~f~~~P~~~f~v~~~~~ 336 (509)
.+.+...|..... .......|+|+..|+.......-+||.|..+ |.+.+.+..+-.++ ...+|.-+++ .+
T Consensus 22 ~~~~~~~L~~~~~~~~~~~~~q~d~YfDtp~~~L~~~~~aLRiR~~~~~~~~~~t~Kgp~~~~-~~e~~v~d~~----~~ 96 (189)
T 2aca_A 22 HDAFLNMVKQIEHEVMFENNQESDWFYDTPQRTLTQQGKSLVLREIQPAGIKLWIVKGPEADR-CEATNITKLD----SA 96 (189)
T ss_dssp HHHHHHHHHTSCCEEEEEEEEEEEEEEECTTCHHHHTTCEEEEEEEETTTEEEEEEECSSTTB-EEEEEBSCHH----HH
T ss_pred HHHHHHHHHhcCCcccCcceEEEEEEEeCCCcchhhCCeEEEEEEecCCCcEEEEEcCCCcCc-eEEEecCCHH----HH
Confidence 5566666665433 1222355999999998888888999999864 45555554443333 2222222221 22
Q ss_pred cccc-ccCceEEEEEEeccceeecCcEEEEehhhhhcCcceEEEec-----cC----hhHHHHHHhhhcCccC-ccchhH
Q 010501 337 GGLM-ALGYTIATILKRSSHIFYDDRVCVKTDWLEQLNRKYVQVQG-----RD----RLYVKYVGEQLGLDGS-YVPRTY 405 (509)
Q Consensus 337 ~gl~-~lgy~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-----~~----~~~v~~~~~~l~~~~~-~~~~~y 405 (509)
..+| .+|+.+...+.-.-..|.-+.+.|.+|+.+.++ +|+-|-- .+ +..+.+.+.+|||... -+++||
T Consensus 97 ~~~L~~lgl~~~~~~~k~R~~~~~~~~~v~lD~~~~lg-~f~EiE~e~~~~~~~~~~~~~~~~l~~~lgi~~~~~~~~sY 175 (189)
T 2aca_A 97 QSMLENMGYEVIQCSKKIRSIFFVGEFHITLDFLDGFG-HFAEFAIMTDDETALARYRERLVALAQQFHLSEADREHRSY 175 (189)
T ss_dssp HHHHHHTTCEEEEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEEESCSGGGTTHHHHHHHHHHHTTCCGGGBCCSCT
T ss_pred HHHHHHcCCcEEEEEEEEEEEEEECCEEEEEEcccCCe-eEEEEEEEcCCccchHHHHHHHHHHHHHcCcCccccchhhH
Confidence 3333 489999999988888888899999999999887 7866652 22 5788999999999865 789999
Q ss_pred HHHH
Q 010501 406 IEQI 409 (509)
Q Consensus 406 ~~~~ 409 (509)
+|++
T Consensus 176 ~~ll 179 (189)
T 2aca_A 176 KEIL 179 (189)
T ss_dssp TTSS
T ss_pred HHHH
Confidence 9764
No 212
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.76 E-value=0.00046 Score=64.60 Aligned_cols=38 Identities=16% Similarity=0.250 Sum_probs=30.5
Q ss_pred eecCCccEEEEEECCCCCcHHHHHHHHHhhCC-Cee--EEEECC
Q 010501 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-SIA--VITMDN 100 (509)
Q Consensus 60 i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp-~~g--~I~~D~ 100 (509)
++.|. +|.|.|++||||||+++.|++.++ ..| .+.+|+
T Consensus 22 ~~~~~---~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 22 NQRGL---TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp TSSCE---EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCCCC---EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 34455 999999999999999999999884 455 677764
No 213
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.75 E-value=0.00077 Score=65.89 Aligned_cols=28 Identities=18% Similarity=0.361 Sum_probs=25.9
Q ss_pred eecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 60 i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+++|+ +++|+||||||||||+..+++.+
T Consensus 27 l~~G~---i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGT---VGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTS---EEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCC---EEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899 99999999999999999999865
No 214
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.75 E-value=0.00062 Score=61.77 Aligned_cols=35 Identities=20% Similarity=0.405 Sum_probs=27.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
+.+|.|.|++||||||+++.|+..+. ...+..|.+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~-~~~i~~D~~ 39 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR-LPLLSKDAF 39 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT-CCEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC-CeEecHHHH
Confidence 45999999999999999999998762 334555554
No 215
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.72 E-value=0.00078 Score=61.84 Aligned_cols=26 Identities=19% Similarity=0.443 Sum_probs=23.5
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCCC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMPS 92 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp~ 92 (509)
.+|.|.|++||||||+++.|+..++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 48999999999999999999998743
No 216
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.71 E-value=0.00053 Score=62.00 Aligned_cols=33 Identities=15% Similarity=0.245 Sum_probs=26.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
+|.|+|++||||||+++.|+..+. ...+..|.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~-~~~~d~d~~ 38 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD-LVFLDSDFL 38 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT-CEEEEHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC-CCEEcccHH
Confidence 689999999999999999999873 344555543
No 217
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.70 E-value=0.0009 Score=61.36 Aligned_cols=32 Identities=19% Similarity=0.322 Sum_probs=25.5
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCCCeeEEEE
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITM 98 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~ 98 (509)
.+|+|.|++||||||+++.|+..++....+.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~ 36 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYL 36 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEE
Confidence 38999999999999999999998732223444
No 218
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.68 E-value=0.00045 Score=62.71 Aligned_cols=33 Identities=15% Similarity=0.340 Sum_probs=27.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
+|+|+|++||||||+++.|+..+ ....+..|.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l-g~~~id~D~~ 36 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL-GVGLLDTDVA 36 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH-TCCEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc-CCCEEeCchH
Confidence 68999999999999999999877 3346666654
No 219
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.68 E-value=0.0014 Score=60.91 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=27.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCC----CeeEEEECC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMP----SIAVITMDN 100 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp----~~g~I~~D~ 100 (509)
.+++|+|+||||||||++.|.+.++ ..+.+..+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~ 44 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTH 44 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCC
Confidence 3899999999999999999998762 467776654
No 220
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.68 E-value=0.00055 Score=62.03 Aligned_cols=33 Identities=18% Similarity=0.349 Sum_probs=27.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
+|.|.|++||||||+++.|+..+ ....+..|++
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~-~~~~~~~d~~ 45 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS-GLKYINVGDL 45 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh-CCeEEEHHHH
Confidence 78899999999999999999887 3445666654
No 221
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.67 E-value=0.00072 Score=63.91 Aligned_cols=35 Identities=11% Similarity=0.386 Sum_probs=28.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
+.+|.|.|++||||||+++.|+..+ ....++.|+.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~~ 41 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF-ELKHLSSGDL 41 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS-SSEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc-CCeEEechHH
Confidence 3489999999999999999999887 3345666554
No 222
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.67 E-value=0.00066 Score=67.90 Aligned_cols=42 Identities=21% Similarity=0.134 Sum_probs=32.8
Q ss_pred eeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECC
Q 010501 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDN 100 (509)
Q Consensus 54 k~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~ 100 (509)
+++++. +++ +++|+|++|+||||++..|++.+ +..+.+.+.+
T Consensus 91 ~~i~~~--~~~---~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 91 RLPVLK--DRN---LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp CCCCCC--SSE---EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceeecC--CCe---EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 567776 566 99999999999999999999988 3444555443
No 223
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.66 E-value=0.0008 Score=60.70 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMP 91 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp 91 (509)
.+|.|.|++||||||+++.|+..++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999873
No 224
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.65 E-value=0.00064 Score=61.26 Aligned_cols=26 Identities=27% Similarity=0.457 Sum_probs=19.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMP 91 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp 91 (509)
+.+|.|.|++||||||+++.|+..+.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34999999999999999999998873
No 225
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.65 E-value=0.00059 Score=60.93 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=26.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
+|+|.|++||||||+++.|+..+. ...+..|.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg-~~~id~d~~ 36 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG-YEFVDTDIF 36 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT-CEEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-CcEEcccHH
Confidence 799999999999999999998773 335555544
No 226
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.65 E-value=0.0013 Score=61.70 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=28.3
Q ss_pred eeecCCccEEEEEECCCCCcHHHHHHHHHhhC--CCeeEEEEC
Q 010501 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMD 99 (509)
Q Consensus 59 ~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll--p~~g~I~~D 99 (509)
-+++|+ +++|+|+||||||||+..++... ...+.+.++
T Consensus 19 Gl~~G~---~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~ 58 (247)
T 2dr3_A 19 GIPERN---VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVA 58 (247)
T ss_dssp SEETTC---EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCc---EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEE
Confidence 468899 99999999999999987776544 333444443
No 227
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.63 E-value=0.0008 Score=61.23 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
+|+|.|++||||||+++.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999987
No 228
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.63 E-value=0.0018 Score=66.13 Aligned_cols=35 Identities=23% Similarity=0.338 Sum_probs=30.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCcc
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNYN 102 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y~ 102 (509)
.+|.|+||+|||||||++.|+..+ ....|+.|++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l-~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL-PCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS-CEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc-CCcEEeccchh
Confidence 489999999999999999999998 45688898873
No 229
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.62 E-value=0.00082 Score=61.31 Aligned_cols=24 Identities=29% Similarity=0.613 Sum_probs=22.6
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+|.|.|++||||||+++.|++.+
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHH
Confidence 499999999999999999999987
No 230
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.61 E-value=0.0014 Score=60.93 Aligned_cols=34 Identities=21% Similarity=0.215 Sum_probs=27.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC----CCeeEEEEC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMD 99 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll----p~~g~I~~D 99 (509)
..+++|+|++|||||||+..|...+ -.++.|..|
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 3489999999999999999999876 145666654
No 231
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.60 E-value=0.00077 Score=62.19 Aligned_cols=25 Identities=12% Similarity=0.294 Sum_probs=22.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+.+|+|.|++||||||+++.|+..+
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3499999999999999999999876
No 232
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.60 E-value=0.00079 Score=62.15 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=22.4
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+|+|.|++||||||+++.|+..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 499999999999999999999876
No 233
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.59 E-value=0.00083 Score=63.06 Aligned_cols=35 Identities=23% Similarity=0.314 Sum_probs=28.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
+.+|.|.|++||||||+++.|+..+. ...+..|++
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~-~~~i~~d~~ 38 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFH-AAHLATGDM 38 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHC-CEEEEHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC-ceEEehhHH
Confidence 34899999999999999999999873 345666554
No 234
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.59 E-value=0.00091 Score=62.36 Aligned_cols=33 Identities=24% Similarity=0.341 Sum_probs=26.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
.|+|.|++||||||+++.|+..+ ..-.++.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d~~ 34 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY-GIPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-SCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEEeHHHH
Confidence 58899999999999999998887 3345666554
No 235
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.59 E-value=0.00075 Score=62.83 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=26.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
.|+|.|++||||||+++.|+..+ ..-.++.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-~~~~i~~d~~ 34 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY-EIPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-CCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCcEeeHHHH
Confidence 58899999999999999998876 3335665544
No 236
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.58 E-value=0.0018 Score=66.09 Aligned_cols=35 Identities=29% Similarity=0.340 Sum_probs=30.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
+.+|.|+||+|||||||+..|+..++ ...|+.|++
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~-~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN-GEVISGDSM 37 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT-EEEEECCGG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc-cceeecCcc
Confidence 34899999999999999999999884 567888886
No 237
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.57 E-value=0.001 Score=64.24 Aligned_cols=36 Identities=11% Similarity=0.022 Sum_probs=28.5
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
++.+|+|.||+||||||+++.|+..+ ..-.++.|+.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~-g~~~is~~~~ 63 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH-CYCHLSTGDL 63 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh-CCeEEecHHH
Confidence 56799999999999999999999876 3345555543
No 238
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=96.56 E-value=0.001 Score=68.77 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=28.5
Q ss_pred EeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 52 iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.++++++.+.+ + +++|+|||||||||++++|..+.
T Consensus 16 ~~~~~~~~~~~-g---~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 16 NLAPGTLNFPE-G---VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp TCCSEEEECCS-E---EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceeeeEEEEcC-C---eEEEECCCCCChhHHHHHHHHhc
Confidence 35666666664 2 89999999999999999998765
No 239
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.56 E-value=0.00097 Score=60.32 Aligned_cols=32 Identities=25% Similarity=0.436 Sum_probs=26.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC--CCeeEEEEC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM--PSIAVITMD 99 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll--p~~g~I~~D 99 (509)
+|+|.|++||||||+++.|+..+ .+...+..|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 78999999999999999999876 234455555
No 240
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.54 E-value=0.00044 Score=63.98 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
+|+|.|++||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l 24 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999987
No 241
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.53 E-value=0.00096 Score=59.39 Aligned_cols=33 Identities=15% Similarity=0.145 Sum_probs=26.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
+|+|.|++||||||+++.|+..+. ...+..|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~-~~~i~~d~~ 34 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN-IPFYDVDEE 34 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT-CCEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-CCEEECcHH
Confidence 689999999999999999999763 335555554
No 242
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.50 E-value=0.00051 Score=75.13 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=43.8
Q ss_pred eEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC-C-eeEEEEC
Q 010501 43 LSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP-S-IAVITMD 99 (509)
Q Consensus 43 lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp-~-~g~I~~D 99 (509)
++--+|...+++.+++.+..|+ .++|.||||+|||||+++|++.++ . .+.+.++
T Consensus 40 l~~i~G~~~~l~~l~~~i~~g~---~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~ 95 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAANQKR---HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVF 95 (604)
T ss_dssp HHHCCSCHHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEE
T ss_pred cceEECchhhHhhccccccCCC---EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEe
Confidence 3333566778899999999999 999999999999999999999983 2 3555553
No 243
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=96.49 E-value=0.0015 Score=68.11 Aligned_cols=28 Identities=18% Similarity=0.485 Sum_probs=25.6
Q ss_pred eecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 60 i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+..++ +++|+||||||||||+++|..++
T Consensus 23 ~~~~~---~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 23 FGESN---FTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp CTTCS---EEEEECSTTSSHHHHHHHHHHHT
T ss_pred ecCCC---EEEEECCCCCCHHHHHHHHHhhh
Confidence 45678 99999999999999999999988
No 244
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.49 E-value=0.00085 Score=68.18 Aligned_cols=39 Identities=26% Similarity=0.336 Sum_probs=32.7
Q ss_pred cEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 49 FFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 49 ~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
...+++++++...++. +|+|+|++|+|||||++.|++.+
T Consensus 42 ~~~~~~~l~~~~~~~~---~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 42 STQLLDAIMPYCGNTL---RLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp HHHHHHHHGGGCSCSE---EEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHHhCCcccCCCE---EEEEEcCCCCCHHHHHHHHHHHH
Confidence 3446677777777777 99999999999999999999876
No 245
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.46 E-value=0.0022 Score=67.13 Aligned_cols=37 Identities=22% Similarity=0.411 Sum_probs=31.1
Q ss_pred ecCCccEEEEEECCCCCcHHHHHHHHHhh------------C-CCeeEEEECC
Q 010501 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNF------------M-PSIAVITMDN 100 (509)
Q Consensus 61 ~~Ge~~iIIgI~GpSGSGKTTLar~L~~l------------l-p~~g~I~~D~ 100 (509)
..|. .+||+|+||||||||+++|.+. . |..|.+.+.+
T Consensus 18 ~~g~---~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 18 GNNL---KTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSCC---EEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cCCC---EEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 5566 9999999999999999999992 2 5678888776
No 246
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.46 E-value=0.0024 Score=65.06 Aligned_cols=35 Identities=23% Similarity=0.487 Sum_probs=30.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
+.+|.|+||+|||||||+..|+..++ .-.|+.|+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~-~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP-VELISVDSA 44 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC-EEEEECCTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC-CcEEecccc
Confidence 45899999999999999999999984 557888885
No 247
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.45 E-value=0.00075 Score=73.07 Aligned_cols=48 Identities=19% Similarity=0.416 Sum_probs=37.7
Q ss_pred EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC-CCeeEEEECCc
Q 010501 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-PSIAVITMDNY 101 (509)
Q Consensus 50 ~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p~~g~I~~D~y 101 (509)
..++.++++.+ +|. +++|.||||+|||||+++|++.+ +..+.+.+.+.
T Consensus 96 ~~~l~~~~~~~-~g~---~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGP---ILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHSSSC-CSC---EEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHHhcccC-CCC---EEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 34566666666 577 99999999999999999999998 55677766664
No 248
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=96.45 E-value=0.0016 Score=58.58 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
+.+|.|||||||||++.+|.-.+
T Consensus 25 ~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999998655
No 249
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.41 E-value=0.0017 Score=65.12 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=24.0
Q ss_pred cCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 62 ~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+++ +++|+|+|||||||++..|++.+
T Consensus 104 ~g~---vi~lvG~~GsGKTTl~~~LA~~l 129 (296)
T 2px0_A 104 HSK---YIVLFGSTGAGKTTTLAKLAAIS 129 (296)
T ss_dssp CSS---EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCc---EEEEECCCCCCHHHHHHHHHHHH
Confidence 456 99999999999999999999987
No 250
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.39 E-value=0.0014 Score=65.36 Aligned_cols=40 Identities=23% Similarity=0.326 Sum_probs=27.5
Q ss_pred ecCCccEEEEEECCCCCcHHHHHHHHHh-hC-CCeeEEEECCc
Q 010501 61 QKNHGIILVGVAGPSGAGKTVFTEKVLN-FM-PSIAVITMDNY 101 (509)
Q Consensus 61 ~~Ge~~iIIgI~GpSGSGKTTLar~L~~-ll-p~~g~I~~D~y 101 (509)
..+..+. +.|.||+|+||||++++|++ ++ +..|.+.+++.
T Consensus 32 ~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 32 QPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp CTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred hCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 4444455 89999999999999999999 45 66777776653
No 251
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.38 E-value=0.0028 Score=65.24 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=30.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
+.+|.|+||+|||||||+..|+..+ ....|+.|..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l-~~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHF-PLEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTS-CEEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHC-CCcEEccccc
Confidence 3489999999999999999999998 4567888887
No 252
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.34 E-value=0.0017 Score=58.05 Aligned_cols=33 Identities=18% Similarity=0.274 Sum_probs=26.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
+|+|.|+.||||||+++.|+..+. .-.+..|..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg-~~~id~D~~ 41 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALK-LEVLDTDMI 41 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHT-CCEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC-CCEEEChHH
Confidence 899999999999999999998762 334555543
No 253
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.30 E-value=0.00026 Score=71.23 Aligned_cols=49 Identities=22% Similarity=0.179 Sum_probs=38.3
Q ss_pred eeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 41 DTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 41 ~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+++.-+|...+++.++..+..|+-+. +.+.||+|+||||+++++++.+
T Consensus 22 ~~~~~~~g~~~~~~~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 22 ETLDEVYGQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp SSGGGCCSCHHHHHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHH
T ss_pred CcHHHhcCcHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHH
Confidence 333333455667888888888888333 8999999999999999999987
No 254
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.27 E-value=0.0013 Score=61.76 Aligned_cols=26 Identities=19% Similarity=0.207 Sum_probs=23.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMP 91 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp 91 (509)
+.+|.|.|++||||||+++.|+..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34899999999999999999998873
No 255
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.24 E-value=0.0035 Score=65.59 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=30.1
Q ss_pred eecCCccEEEEEECCCCCcHHHHHHHHH--hhCC------CeeEEEECCc
Q 010501 60 AQKNHGIILVGVAGPSGAGKTVFTEKVL--NFMP------SIAVITMDNY 101 (509)
Q Consensus 60 i~~Ge~~iIIgI~GpSGSGKTTLar~L~--~llp------~~g~I~~D~y 101 (509)
+++|+ +++|+||||||||||++.|+ ..+| ..+.+.+++.
T Consensus 175 I~~Ge---i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E 221 (400)
T 3lda_A 175 VETGS---ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTE 221 (400)
T ss_dssp EETTS---EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESS
T ss_pred cCCCc---EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCC
Confidence 57899 99999999999999999664 3333 2347777654
No 256
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.20 E-value=0.0028 Score=65.48 Aligned_cols=39 Identities=15% Similarity=0.198 Sum_probs=29.7
Q ss_pred eecCCccEEEEEECCCCCcHHHHHHHHHhhC-C-CeeEEEECCc
Q 010501 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM-P-SIAVITMDNY 101 (509)
Q Consensus 60 i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll-p-~~g~I~~D~y 101 (509)
+++|. ++.|.||+|||||||+..++..+ + ....+.++..
T Consensus 58 i~~G~---i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 58 YPRGR---IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp EETTE---EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccCCc---EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 46788 99999999999999999998876 2 2224455543
No 257
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.14 E-value=0.003 Score=56.06 Aligned_cols=25 Identities=12% Similarity=0.153 Sum_probs=22.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
...|+|+|++|+|||||++.|.+..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCS
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998753
No 258
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.14 E-value=0.0031 Score=61.25 Aligned_cols=25 Identities=28% Similarity=0.666 Sum_probs=22.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+.+|.|+|++||||||+++.|+..+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999999874
No 259
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.13 E-value=0.0019 Score=60.68 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=28.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
...|.|.|++||||||+++.|+..+ ....+..|+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l-~~~~i~~d~l 39 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY-GLAHLSTGDM 39 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH-CCEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh-CceEEehhHH
Confidence 3489999999999999999999987 3446666654
No 260
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.09 E-value=0.0022 Score=60.70 Aligned_cols=33 Identities=24% Similarity=0.294 Sum_probs=26.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
+|.|.|++||||||+++.|+..+. ...+..|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg-~~~i~~dd~ 34 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS-LAHIESGGI 34 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT-CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-CeEEchHHH
Confidence 689999999999999999998773 345666554
No 261
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.04 E-value=0.0038 Score=55.91 Aligned_cols=25 Identities=12% Similarity=0.167 Sum_probs=22.2
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
+++.|+|+|++|+|||||++.|.+.
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999874
No 262
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.03 E-value=0.0039 Score=65.63 Aligned_cols=34 Identities=24% Similarity=0.375 Sum_probs=29.5
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
.+|+|+||+|||||||+..|+..++ ...|+.|+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~-~~iis~Ds~ 36 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN-GEVINSDSM 36 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT-EEEEECCTT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC-CeEeecCcc
Confidence 4899999999999999999999885 457888883
No 263
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.02 E-value=0.005 Score=58.69 Aligned_cols=47 Identities=11% Similarity=0.013 Sum_probs=33.1
Q ss_pred CCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHH-HHHHHHhhhhHHHHhhcC
Q 010501 177 LIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEI-IHQISETVYPMYKAFIEP 228 (509)
Q Consensus 177 lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~V-i~~y~~~V~P~~~~fIeP 228 (509)
..|..||++++.++.+.| + ..||+..+.. ...|...++..|..+..+
T Consensus 149 ~pd~~i~l~~~~~~~~~R-~----~~R~r~~e~~~~~~~~~~v~~~y~~~~~~ 196 (241)
T 2ocp_A 149 TLHGFIYLQASPQVCLKR-L----YQRAREEEKGIELAYLEQLHGQHEAWLIH 196 (241)
T ss_dssp CCCEEEEEECCHHHHHHH-H----HHSCCTTTTTCCHHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEEECCHHHHHHH-H----HhcCCcccccCCHHHHHHHHHHHHHHHhh
Confidence 479999999998876544 2 3466654432 245777889999998876
No 264
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.01 E-value=0.0047 Score=63.08 Aligned_cols=25 Identities=40% Similarity=0.728 Sum_probs=23.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
..+|+|+|++|||||||++.|.+.+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 4599999999999999999999876
No 265
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.01 E-value=0.0026 Score=60.41 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=28.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
+..|.|.|++||||||+++.|+..+. ...|..|+.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~-~~~i~~d~l 50 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFC-VCHLATGDM 50 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT-CEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-CceecHHHH
Confidence 45899999999999999999998873 445666543
No 266
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.99 E-value=0.0022 Score=59.98 Aligned_cols=33 Identities=18% Similarity=0.224 Sum_probs=26.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
.|+|.|++||||||+++.|+..+ ..-.++.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~-g~~~i~~d~~ 34 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY-GIPQISTGDM 34 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-CCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCeEEeHHHH
Confidence 57999999999999999999876 3345666554
No 267
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.99 E-value=0.0034 Score=71.67 Aligned_cols=65 Identities=6% Similarity=0.008 Sum_probs=49.8
Q ss_pred ccCCCCcCCCeeeeecCccEEEEec--ceeeeccccCCCCeEEEeecCchHHHHHHHHHHHHHcCCCHHHHHHH
Q 010501 142 DFKSSSRIGYRTLEVPSSRIVIIEG--IYALSEKLRPLIDLRVSVTGGVHFDLVKRVFRDIQRVGQEPEEIIHQ 213 (509)
Q Consensus 142 D~~~~~rsgg~~~~v~~a~VLIVEG--i~aL~dElr~lLDlkIfVd~d~dirLiRRI~RD~~erG~t~e~Vi~~ 213 (509)
+....++|+|+.|++..+++|..+. .++++|||...||. .+...+.++.+.+++.|.++.-|-|.
T Consensus 374 ~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~-------~~~~~L~~~l~~L~~~G~TVIvVeHd 440 (842)
T 2vf7_A 374 DRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHP-------ADTEALLSALENLKRGGNSLFVVEHD 440 (842)
T ss_dssp TCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCG-------GGHHHHHHHHHHHHTTTCEEEEECCC
T ss_pred cCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCH-------HHHHHHHHHHHHHHHcCCEEEEEcCC
Confidence 4445567888888998888888775 57888999999997 57778888888888888776544443
No 268
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.87 E-value=0.0035 Score=67.47 Aligned_cols=44 Identities=25% Similarity=0.290 Sum_probs=33.5
Q ss_pred EeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECCc
Q 010501 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDNY 101 (509)
Q Consensus 52 iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~y 101 (509)
+++++++.++.| ++|.||+|+|||||+++|++.+ ..+.+.+++-
T Consensus 55 ~~~~lg~~ip~G-----vLL~GppGtGKTtLaraIa~~~-~~~~i~i~g~ 98 (499)
T 2dhr_A 55 RFHEMGARIPKG-----VLLVGPPGVGKTHLARAVAGEA-RVPFITASGS 98 (499)
T ss_dssp GTTTTSCCCCSE-----EEEECSSSSSHHHHHHHHHHHT-TCCEEEEEGG
T ss_pred hhhhccCCCCce-----EEEECCCCCCHHHHHHHHHHHh-CCCEEEEehh
Confidence 445556655543 7899999999999999999988 3566766653
No 269
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.86 E-value=0.0037 Score=72.36 Aligned_cols=51 Identities=24% Similarity=0.269 Sum_probs=33.2
Q ss_pred cceeeeceeeeeeeEEEeCcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHH
Q 010501 30 DSDRYEIVPIEDTLSFEKGFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (509)
Q Consensus 30 ~s~~~~~~~i~~~lsf~~g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLa 83 (509)
.+.+++-..+.+.+...--...=|+||++.++.++ +|.|.|.|||||||||
T Consensus 13 ~~~~~~~~~~~~~I~i~gar~hNLkni~v~iP~~~---lvv~tG~SGSGKSSLa 63 (993)
T 2ygr_A 13 SSGHIEGRHMADRLIVKGAREHNLRSVDLDLPRDA---LIVFTGLSGSGKSSLA 63 (993)
T ss_dssp ----------CCEEEEEEECSSSCCSEEEEEESSS---EEEEEESTTSSHHHHH
T ss_pred ccCcccCCCCCCcEEEecccccccCceeeeccCCC---EEEEECCCCCcHHHHH
Confidence 45555555555555554323345899999999999 9999999999999997
No 270
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.86 E-value=0.0066 Score=60.15 Aligned_cols=36 Identities=25% Similarity=0.386 Sum_probs=28.7
Q ss_pred ecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 010501 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (509)
Q Consensus 61 ~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~ 100 (509)
..+. .+.|.||+|+|||||+++|++.+ ....+.+++
T Consensus 47 ~~~~---~vLL~Gp~GtGKT~la~ala~~~-~~~~i~v~~ 82 (301)
T 3cf0_A 47 TPSK---GVLFYGPPGCGKTLLAKAIANEC-QANFISIKG 82 (301)
T ss_dssp CCCS---EEEEECSSSSSHHHHHHHHHHHT-TCEEEEECH
T ss_pred CCCc---eEEEECCCCcCHHHHHHHHHHHh-CCCEEEEEh
Confidence 4455 88999999999999999999988 345555543
No 271
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.86 E-value=0.0043 Score=59.72 Aligned_cols=38 Identities=24% Similarity=0.261 Sum_probs=28.8
Q ss_pred ecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEEC
Q 010501 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (509)
Q Consensus 61 ~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D 99 (509)
++-.++.+|.|.||+||||+|.++.|+..+ ....|+.+
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~-g~~hIstG 61 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKF-HFNHLSSG 61 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHH-CCEEECHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHH-CCceEcHH
Confidence 444456699999999999999999999987 33344443
No 272
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.80 E-value=0.0055 Score=62.00 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
+.+|+|||||||||++.+|.-.+
T Consensus 25 ~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 88999999999999999986543
No 273
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.73 E-value=0.0049 Score=65.15 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=27.3
Q ss_pred eeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 54 k~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+++++. .+. +++|+|++||||||++..|+..+
T Consensus 91 ~~i~l~--~~~---vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 91 RLPVLK--DRN---LWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp CCCCCC--SSE---EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccccCC--CCe---EEEEECCCCCCHHHHHHHHHHHH
Confidence 456665 455 99999999999999999999988
No 274
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=95.71 E-value=0.0055 Score=55.05 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=21.1
Q ss_pred EEEEEECCCCCcHHHHHHHHHhh
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~l 89 (509)
..|+|+|++|+|||||++.|.+.
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999875
No 275
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=95.69 E-value=0.0039 Score=71.73 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=27.6
Q ss_pred EeeeeceeeecCCccEEEEEECCCCCcHHHHH
Q 010501 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (509)
Q Consensus 52 iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLa 83 (509)
=|+||++.++.++ +|.|.|.|||||||||
T Consensus 13 NLkni~~~ip~~~---l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 13 NLKNITVRIPKNR---LVVITGVSGSGKSSLA 41 (916)
T ss_dssp TCCSBCCEEETTS---EEEEEESTTSSSHHHH
T ss_pred ccCcceeccCCCc---EEEEECCCCCcHHHHH
Confidence 3899999999999 9999999999999998
No 276
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=95.67 E-value=0.0048 Score=71.24 Aligned_cols=29 Identities=24% Similarity=0.439 Sum_probs=27.5
Q ss_pred EeeeeceeeecCCccEEEEEECCCCCcHHHHH
Q 010501 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFT 83 (509)
Q Consensus 52 iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLa 83 (509)
=|+||++.++.++ +|.|.|.|||||||||
T Consensus 33 NLkni~v~iP~~~---lvv~tG~SGSGKSSLa 61 (972)
T 2r6f_A 33 NLKNIDVEIPRGK---LVVLTGLSGSGKSSLA 61 (972)
T ss_dssp SCCSEEEEEETTS---EEEEEESTTSSHHHHH
T ss_pred cCCceeeeccCCc---EEEEECCCCCCHHHHH
Confidence 4899999999999 9999999999999986
No 277
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=95.64 E-value=0.0059 Score=58.46 Aligned_cols=23 Identities=30% Similarity=0.483 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
-+.|.||+|+||||++++|++.+
T Consensus 47 ~vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 47 GVLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHc
Confidence 47899999999999999999987
No 278
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.57 E-value=0.0088 Score=63.34 Aligned_cols=37 Identities=24% Similarity=0.436 Sum_probs=29.0
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhC-C---CeeEEEECCc
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFM-P---SIAVITMDNY 101 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~ll-p---~~g~I~~D~y 101 (509)
++.+|+++|++||||||++..|+..+ + .+..+..|-|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 45699999999999999999999887 2 4455555543
No 279
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.56 E-value=0.0046 Score=64.60 Aligned_cols=26 Identities=31% Similarity=0.339 Sum_probs=23.2
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+.+|.|+|++||||||+++.|+..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 35599999999999999999998876
No 280
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.55 E-value=0.0075 Score=56.68 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
+.+|.|||||||||++.+|.-.+
T Consensus 25 ~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh
Confidence 89999999999999999997666
No 281
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=95.55 E-value=0.0062 Score=58.89 Aligned_cols=29 Identities=21% Similarity=0.335 Sum_probs=25.3
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhCCCe
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFMPSI 93 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~llp~~ 93 (509)
++.+|.|.|+.||||||+++.|+..+...
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~ 51 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDW 51 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 45699999999999999999999988543
No 282
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.53 E-value=0.0058 Score=55.66 Aligned_cols=35 Identities=23% Similarity=0.133 Sum_probs=20.5
Q ss_pred EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 51 ~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+++++++..+. ..|+|+|++|+|||||++.+.+.
T Consensus 12 ~~l~~~~~~~~~----~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKH----GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ----------------CEEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCc----cEEEEECCCCCCHHHHHHHHhcC
Confidence 356777766543 36899999999999999999874
No 283
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.52 E-value=0.0055 Score=55.34 Aligned_cols=23 Identities=22% Similarity=0.525 Sum_probs=20.9
Q ss_pred EEEEEECCCCCcHHHHHHHHHhh
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~l 89 (509)
+-|+|+|++|+|||||++.+.+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999874
No 284
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.50 E-value=0.0062 Score=61.05 Aligned_cols=31 Identities=23% Similarity=0.227 Sum_probs=26.1
Q ss_pred eceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 56 CQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 56 IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+++..+ +. +++++|++|+||||++..|+..+
T Consensus 92 i~~~~~-~~---vi~i~G~~G~GKTT~~~~la~~~ 122 (297)
T 1j8m_F 92 VIPDKI-PY---VIMLVGVQGTGKTTTAGKLAYFY 122 (297)
T ss_dssp CSCSSS-SE---EEEEECSSCSSTTHHHHHHHHHH
T ss_pred cccCCC-Ce---EEEEECCCCCCHHHHHHHHHHHH
Confidence 555543 45 99999999999999999999887
No 285
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=95.46 E-value=0.0056 Score=61.07 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=21.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHhh
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~l 89 (509)
..|+|+|++|+|||||++.|.+.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 38999999999999999999875
No 286
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.44 E-value=0.01 Score=51.21 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=21.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhh
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
++-|+|+|++|+|||||++.+.+.
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999998764
No 287
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.40 E-value=0.0062 Score=57.84 Aligned_cols=32 Identities=22% Similarity=0.389 Sum_probs=25.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~ 100 (509)
+|.|.||+||||+|.++.|+..+ ..-.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-g~~~istGd 33 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-GFVHISTGD 33 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-CCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-CCeEEcHHH
Confidence 67899999999999999999987 334455544
No 288
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.40 E-value=0.011 Score=52.47 Aligned_cols=27 Identities=26% Similarity=0.158 Sum_probs=23.4
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 63 NHGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 63 Ge~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+..+-|+|+|++|+|||||++.+.+.
T Consensus 8 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 8 YDYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 345678999999999999999999864
No 289
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.39 E-value=0.011 Score=51.43 Aligned_cols=26 Identities=19% Similarity=0.226 Sum_probs=22.4
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
..+-|+|+|++|+|||||++.|.+..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCC
Confidence 35689999999999999999998643
No 290
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.36 E-value=0.011 Score=60.67 Aligned_cols=28 Identities=18% Similarity=0.380 Sum_probs=24.9
Q ss_pred eecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 60 i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+++|+ ++.|.|++|||||||+..++...
T Consensus 58 l~~G~---iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 58 LPRGR---VIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp EETTS---EEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCe---EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889 99999999999999998887665
No 291
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.34 E-value=0.0099 Score=51.12 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=21.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+-|+++|++|+|||||++.+.+..
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCc
Confidence 3568999999999999999998653
No 292
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.32 E-value=0.0063 Score=64.05 Aligned_cols=48 Identities=13% Similarity=0.110 Sum_probs=40.2
Q ss_pred eeeeEEEeC-cEEEee--------------eeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 40 EDTLSFEKG-FFIVIR--------------ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 40 ~~~lsf~~g-~~~iLk--------------~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
-++++|-+. .+..++ ++.+.+.+|+ .++|.||+|+|||||++.|+..+
T Consensus 136 Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQ---r~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 136 FENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQ---RGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTC---EEEEECCSSSSHHHHHHHHHHHH
T ss_pred eccccccCCCCccccccCCCCcccccceeeeeeeeecCCc---EEEEecCCCCChhHHHHHHHHHH
Confidence 455666554 456788 8999999999 99999999999999999998875
No 293
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.32 E-value=0.011 Score=52.38 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.6
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+++-|+|+|++|+|||||++.|.+.-
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCC
Confidence 46789999999999999999998643
No 294
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.30 E-value=0.012 Score=50.85 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=21.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhh
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+-|+|+|++|+|||||++.+.+.
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457899999999999999999864
No 295
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.28 E-value=0.01 Score=56.17 Aligned_cols=27 Identities=22% Similarity=0.378 Sum_probs=23.4
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+.+.|+|+|++|+|||||++.|.+..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 446789999999999999999999865
No 296
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.28 E-value=0.01 Score=53.39 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=23.3
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+.+.|+|+|++|||||||++.|.+..
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998764
No 297
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.24 E-value=0.016 Score=55.61 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=24.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~ 100 (509)
.|.|+||+|||||||+..|+.... ..|+-|.
T Consensus 36 ~ilI~GpsGsGKStLA~~La~~g~--~iIsdDs 66 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALELVQRGH--RLIADDR 66 (205)
T ss_dssp EEEEECCCTTTTHHHHHHHHTTTC--EEEESSE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC--eEEecch
Confidence 899999999999999999988763 3444443
No 298
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.24 E-value=0.013 Score=51.63 Aligned_cols=26 Identities=35% Similarity=0.451 Sum_probs=22.5
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+.+-|+|+|++|||||||++.+.+..
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 46789999999999999999987653
No 299
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.23 E-value=0.013 Score=50.86 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhh
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
++-|+|+|++|+|||||++.+.+.
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999864
No 300
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.21 E-value=0.011 Score=52.19 Aligned_cols=23 Identities=26% Similarity=0.329 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+.|.||+|+||||+++.++..+
T Consensus 45 ~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999998876
No 301
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=95.20 E-value=0.0078 Score=61.13 Aligned_cols=33 Identities=15% Similarity=0.169 Sum_probs=25.4
Q ss_pred EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 51 ~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+|+++++.++ .|+|+|++|||||||++.|.+.
T Consensus 25 ~~l~~i~~~lp------~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 25 SALPTLWDSLP------AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCC----CCCC------EEEEECBTTSSHHHHHHHHHTS
T ss_pred cccccccccCC------EEEEECCCCCcHHHHHHHHhCC
Confidence 46677777766 8999999999999999999994
No 302
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.20 E-value=0.013 Score=50.88 Aligned_cols=25 Identities=16% Similarity=0.201 Sum_probs=21.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
++-|+|+|++|+|||||++.+.+.-
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC
Confidence 4578999999999999999997653
No 303
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=95.20 E-value=0.017 Score=60.48 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.5
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.++.|+|+|+||+|||||++.|.+..
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~ 204 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKE 204 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCc
Confidence 46899999999999999999998864
No 304
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.20 E-value=0.0025 Score=58.18 Aligned_cols=38 Identities=16% Similarity=0.027 Sum_probs=27.7
Q ss_pred eeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 53 Lk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
++.+...+..+..+..+.|.||+|+|||||++.++..+
T Consensus 32 ~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 32 LTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp HHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33333334444434488999999999999999998876
No 305
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.19 E-value=0.013 Score=54.26 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+.|.||+|+|||||++.++..+
T Consensus 54 ~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 54 AIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 88899999999999999998876
No 306
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.17 E-value=0.013 Score=50.92 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhh
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+-|+|+|++|+|||||++.+.+.
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999863
No 307
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.16 E-value=0.014 Score=50.84 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.4
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+.+-|+|+|++|+|||||++.+.+.-
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 35679999999999999999998753
No 308
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.16 E-value=0.014 Score=51.31 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.9
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+.+-|+|+|++|+|||||++.+.+.
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44678999999999999999999875
No 309
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.12 E-value=0.014 Score=52.34 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=22.9
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 63 NHGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 63 Ge~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
+.+++-|+|+|.+|+|||||++.|.+.
T Consensus 18 ~~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 18 GMTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp -CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceeEEEEECcCCCCHHHHHHHHHcC
Confidence 445678999999999999999999865
No 310
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.11 E-value=0.014 Score=50.83 Aligned_cols=25 Identities=20% Similarity=0.093 Sum_probs=22.2
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
..+-|+|+|++|+|||||++.+.+.
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 4568999999999999999999865
No 311
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.10 E-value=0.016 Score=61.60 Aligned_cols=37 Identities=22% Similarity=0.406 Sum_probs=29.2
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhC----CCeeEEEECCc
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNY 101 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~ll----p~~g~I~~D~y 101 (509)
+|.+|+++|++||||||++..|+..+ ..+..+..|-|
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 46799999999999999999999876 24555555544
No 312
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.10 E-value=0.019 Score=57.58 Aligned_cols=29 Identities=17% Similarity=0.204 Sum_probs=25.6
Q ss_pred eeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 59 ~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
-++.|+ ++.|.|++|||||||+..++...
T Consensus 103 Gl~~G~---i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 103 GIETRT---MTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEETTS---EEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCc---EEEEECCCCCCHhHHHHHHHHHH
Confidence 357888 99999999999999999998764
No 313
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.06 E-value=0.014 Score=51.19 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhh
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+-|+|+|++|+|||||++.+.+.
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 567999999999999999999764
No 314
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.06 E-value=0.012 Score=53.93 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.9
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
..+.|.||+|+|||||+++|+..+
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 378899999999999999999876
No 315
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.05 E-value=0.015 Score=51.19 Aligned_cols=26 Identities=19% Similarity=0.342 Sum_probs=22.4
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
..+-|+|+|++|+|||||++.+.+.-
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCC
Confidence 45689999999999999999998653
No 316
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.05 E-value=0.013 Score=51.68 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=21.8
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
+...|+|+|++|+|||||++.+.+.
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999764
No 317
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.04 E-value=0.015 Score=51.69 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=22.9
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+.+-|+|+|++|+|||||++.|.+.-
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc
Confidence 45789999999999999999998763
No 318
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.04 E-value=0.012 Score=57.27 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=22.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+.|+|+|++|||||||++.|.+..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999998764
No 319
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.01 E-value=0.016 Score=50.31 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=21.9
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
+++-|+|+|++|+|||||++.+.+.
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3568999999999999999999864
No 320
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.00 E-value=0.014 Score=54.07 Aligned_cols=26 Identities=31% Similarity=0.663 Sum_probs=22.7
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+...|+|+|.+|||||||++.|...+
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34589999999999999999998764
No 321
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.00 E-value=0.016 Score=50.48 Aligned_cols=25 Identities=24% Similarity=0.212 Sum_probs=21.8
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
+.+-|+|+|++|+|||||++.+.+.
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999999764
No 322
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.98 E-value=0.02 Score=58.25 Aligned_cols=37 Identities=27% Similarity=0.425 Sum_probs=29.4
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHhhC----CCeeEEEEC
Q 010501 63 NHGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMD 99 (509)
Q Consensus 63 Ge~~iIIgI~GpSGSGKTTLar~L~~ll----p~~g~I~~D 99 (509)
..+..+|+|+|++|+|||||+..|+..+ ..++.+..|
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 3456799999999999999999998775 245666655
No 323
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.98 E-value=0.015 Score=50.63 Aligned_cols=25 Identities=24% Similarity=0.382 Sum_probs=21.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
++-|+|+|++|+|||||++.+.+.-
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCC
Confidence 4678999999999999999998653
No 324
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.97 E-value=0.019 Score=50.57 Aligned_cols=25 Identities=24% Similarity=0.219 Sum_probs=22.1
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
+.+-|+|+|++|+|||||++.+.+.
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 4678999999999999999999764
No 325
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.97 E-value=0.014 Score=59.65 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
+..|.|+|||||||++.+|.-.+
T Consensus 27 l~vi~G~NGaGKT~ileAI~~~l 49 (371)
T 3auy_A 27 IVAIIGENGSGKSSIFEAVFFAL 49 (371)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999997533
No 326
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.93 E-value=0.016 Score=56.38 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
-+.|.||+|+||||+++++++.+
T Consensus 56 ~vll~Gp~GtGKT~la~~la~~~ 78 (297)
T 3b9p_A 56 GLLLFGPPGNGKTLLARAVATEC 78 (297)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHT
T ss_pred eEEEECcCCCCHHHHHHHHHHHh
Confidence 78999999999999999999987
No 327
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.93 E-value=0.017 Score=49.78 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=20.9
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.-|+|+|++|+|||||++.+.+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998753
No 328
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.90 E-value=0.019 Score=51.70 Aligned_cols=27 Identities=26% Similarity=0.271 Sum_probs=23.3
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+..+-|+|+|++|+|||||++.|.+.-
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCC
Confidence 446789999999999999999998753
No 329
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=94.88 E-value=0.016 Score=50.52 Aligned_cols=24 Identities=25% Similarity=0.419 Sum_probs=20.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhh
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+-|+|+|++|+|||||++.+.+.
T Consensus 2 ~~ki~ivG~~~~GKSsli~~l~~~ 25 (169)
T 3q85_A 2 VFKVMLVGESGVGKSTLAGTFGGL 25 (169)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEEECCCCCCHHHHHHHHHhc
Confidence 357899999999999999999754
No 330
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.85 E-value=0.013 Score=66.38 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=29.3
Q ss_pred eeecCCccEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 010501 59 LAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (509)
Q Consensus 59 ~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~ 100 (509)
.+..+. -|+|.||||||||||+++|++.++. ..+.+++
T Consensus 234 ~i~~~~---~vLL~Gp~GtGKTtLarala~~l~~-~~i~v~~ 271 (806)
T 1ypw_A 234 GVKPPR---GILLYGPPGTGKTLIARAVANETGA-FFFLING 271 (806)
T ss_dssp CCCCCC---EEEECSCTTSSHHHHHHHHHHTTTC-EEEEEEH
T ss_pred CCCCCC---eEEEECcCCCCHHHHHHHHHHHcCC-cEEEEEc
Confidence 345666 8999999999999999999998842 2344443
No 331
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=94.77 E-value=0.0062 Score=65.22 Aligned_cols=35 Identities=20% Similarity=0.354 Sum_probs=28.6
Q ss_pred EeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 52 iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.++++++.+.+ + +.+|+|+||||||||+.+|..++
T Consensus 50 ~~~~~~l~f~~-g---~n~i~G~NGaGKS~lleAl~~ll 84 (517)
T 4ad8_A 50 TITQLELELGG-G---FCAFTGETGAGKSIIVDALGLLL 84 (517)
T ss_dssp TBSCEEEECCC-S---EEEEEESHHHHHHHHTHHHHHHT
T ss_pred ceeeEEEecCC-C---eEEEEcCCCCCHHHHHHHHHHHh
Confidence 45666666554 3 89999999999999999998886
No 332
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.77 E-value=0.017 Score=56.30 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=22.4
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
..+.|.||+|+||||++++|++.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 378999999999999999999987
No 333
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.76 E-value=0.019 Score=51.57 Aligned_cols=26 Identities=23% Similarity=0.238 Sum_probs=22.7
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+.+-|+|+|++|+|||||++.|.+.
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcC
Confidence 34678999999999999999999874
No 334
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.76 E-value=0.013 Score=51.84 Aligned_cols=23 Identities=26% Similarity=0.251 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+.|.||+|+||||+++.++..+
T Consensus 45 ~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 45 NPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHH
Confidence 66899999999999999998876
No 335
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.75 E-value=0.02 Score=50.51 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=21.9
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
+.+-|+|+|++|+|||||++.|.+.
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 3568999999999999999999864
No 336
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.73 E-value=0.014 Score=51.29 Aligned_cols=26 Identities=19% Similarity=0.310 Sum_probs=22.1
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
+..+-|+|+|++|+|||||++.|.+.
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34678999999999999999998653
No 337
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.72 E-value=0.023 Score=49.79 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=23.2
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+..+-|+|+|++|+|||||++.|.+.-
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCC
Confidence 446789999999999999999998753
No 338
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.70 E-value=0.018 Score=50.46 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=21.7
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
+.+-|+|+|++|+|||||++.+.+.
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3468999999999999999999864
No 339
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.70 E-value=0.014 Score=52.42 Aligned_cols=26 Identities=31% Similarity=0.535 Sum_probs=22.5
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+.+.|+|+|++|+|||||++.|.+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34568999999999999999999864
No 340
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.69 E-value=0.021 Score=50.36 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=23.1
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
++.+-|+|+|++|+|||||++.+.+.-
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhCC
Confidence 456789999999999999999997653
No 341
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=94.68 E-value=0.02 Score=55.23 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
-+.|.||+|+|||||+++++..+
T Consensus 53 ~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 53 GILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 68899999999999999999988
No 342
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.66 E-value=0.018 Score=55.65 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=23.9
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhCC
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFMP 91 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~llp 91 (509)
+..+|.|.|++||||||+++.|...+.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 455999999999999999999998773
No 343
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.58 E-value=0.026 Score=50.07 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=22.7
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+.+-|+|+|++|+|||||++.+.+.
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44678999999999999999999865
No 344
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.56 E-value=0.024 Score=50.05 Aligned_cols=26 Identities=19% Similarity=0.169 Sum_probs=22.4
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
...+-|+|+|++|+|||||++.+.+.
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 34568999999999999999999864
No 345
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.56 E-value=0.019 Score=54.73 Aligned_cols=24 Identities=29% Similarity=0.584 Sum_probs=22.5
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+|.|.|++||||||+++.|...+
T Consensus 7 ~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 7 LFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 399999999999999999999887
No 346
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.55 E-value=0.025 Score=52.88 Aligned_cols=26 Identities=27% Similarity=0.456 Sum_probs=22.6
Q ss_pred eecCCccEEEEEECCCCCcHHHHHHHHHh
Q 010501 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (509)
Q Consensus 60 i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ 88 (509)
+++|+ ++.|+|++|+|||||+..++.
T Consensus 27 l~~G~---l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 27 FPEGT---TVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp EETTC---EEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCe---EEEEEeCCCCCHHHHHHHHHH
Confidence 37888 999999999999999977653
No 347
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.54 E-value=0.024 Score=51.24 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.0
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
+.+-|+|+|++|+|||||++.+.+.
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999999999764
No 348
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.50 E-value=0.027 Score=50.44 Aligned_cols=26 Identities=19% Similarity=0.255 Sum_probs=22.8
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
+..+-|+|+|++|+|||||++.|.+.
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 44678999999999999999999874
No 349
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=94.50 E-value=0.021 Score=52.93 Aligned_cols=26 Identities=31% Similarity=0.677 Sum_probs=22.5
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+...|+|+|.+|+|||||++.+....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998764
No 350
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.50 E-value=0.014 Score=56.52 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
+|.|.|++||||||+++.|...+
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999887
No 351
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.49 E-value=0.022 Score=50.66 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=22.5
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
++.+-|+|+|++|+|||||++.+.+.
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 34568999999999999999999765
No 352
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=94.48 E-value=0.014 Score=57.68 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.9
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
..|..+.|.||+|+|||+|+++|+..+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345688899999999999999999987
No 353
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.48 E-value=0.021 Score=52.49 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=23.3
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+.+.|+|+|++|+|||||++.|.+..
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998764
No 354
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.47 E-value=0.026 Score=51.19 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=22.7
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
..+-|+|+|++|+|||||++.|.+.-
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC
Confidence 46789999999999999999998753
No 355
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.47 E-value=0.017 Score=51.48 Aligned_cols=25 Identities=24% Similarity=0.197 Sum_probs=21.8
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
..+.|+|+|++|+|||||++.|.+.
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcC
Confidence 3458899999999999999999775
No 356
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.44 E-value=0.02 Score=62.55 Aligned_cols=30 Identities=10% Similarity=0.107 Sum_probs=26.3
Q ss_pred cCCccEEEEEECCCCCcHHHHHHHHHhhCC
Q 010501 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (509)
Q Consensus 62 ~Ge~~iIIgI~GpSGSGKTTLar~L~~llp 91 (509)
.+.++.+|.|.|.+||||||+++.|+..+.
T Consensus 392 ~gq~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 392 RATQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TTTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 455677999999999999999999999874
No 357
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.44 E-value=0.022 Score=50.12 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
-|.|.|++|+|||++|++|....
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSS
T ss_pred CEEEECCCCCCHHHHHHHHHHhC
Confidence 57899999999999999999876
No 358
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.42 E-value=0.026 Score=49.87 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=21.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhh
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+-|+|+|++|+|||||++.+.+.
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999764
No 359
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.40 E-value=0.028 Score=50.51 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=22.8
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
+..+-|+|+|++|+|||||++.|.+.
T Consensus 20 ~~~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceeEEEEECCCCCCHHHHHHHHHcC
Confidence 44678999999999999999999865
No 360
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.40 E-value=0.028 Score=50.10 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=23.7
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+..+-|+|+|++|+|||||++.+.+..
T Consensus 12 ~~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 12 EINFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccccEEEEECCCCCCHHHHHHHHHhhc
Confidence 346789999999999999999998876
No 361
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.38 E-value=0.024 Score=50.29 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=21.3
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLN 88 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~ 88 (509)
+.+-|+|+|++|+|||||++.+.+
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 356899999999999999999984
No 362
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=94.38 E-value=0.03 Score=57.58 Aligned_cols=23 Identities=22% Similarity=0.460 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
+|+|+|++|||||||++.|.+..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~ 203 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLT 203 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 69999999999999999998764
No 363
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=94.37 E-value=0.015 Score=50.66 Aligned_cols=23 Identities=22% Similarity=0.281 Sum_probs=20.2
Q ss_pred EEEEEECCCCCcHHHHHHHHHhh
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~l 89 (509)
+-|+|+|++|+|||||++.+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~~ 25 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGGV 25 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCCC
T ss_pred EEEEEECCCCCCHHHHHHHHcCc
Confidence 46899999999999999988654
No 364
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=94.36 E-value=0.023 Score=53.82 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
-+.|.||+|+||||++++++..+
T Consensus 41 ~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 41 GALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 67899999999999999999877
No 365
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.36 E-value=0.028 Score=50.46 Aligned_cols=26 Identities=31% Similarity=0.276 Sum_probs=22.1
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+.+-|+|+|++|+|||||++.+.+.
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHcC
Confidence 34678999999999999999999764
No 366
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.35 E-value=0.028 Score=50.88 Aligned_cols=26 Identities=23% Similarity=0.360 Sum_probs=22.0
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+.+-|+|+|++|+|||||++.+.+.
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34678999999999999999877654
No 367
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.34 E-value=0.023 Score=57.75 Aligned_cols=27 Identities=15% Similarity=0.143 Sum_probs=24.5
Q ss_pred eecCCccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 60 i~~Ge~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
++.|+ ++.|.|++|||||||+..++..
T Consensus 119 l~~G~---i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 119 IESMA---ITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp BCSSE---EEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCe---EEEEECCCCCCHHHHHHHHHHH
Confidence 46778 9999999999999999999886
No 368
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.34 E-value=0.031 Score=50.42 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=23.5
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 63 NHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 63 Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
....+-|+|+|++|+|||||++.+.+.-
T Consensus 18 ~~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 18 GSYLFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp TCEEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3446789999999999999999998653
No 369
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.33 E-value=0.028 Score=51.15 Aligned_cols=29 Identities=17% Similarity=0.252 Sum_probs=22.4
Q ss_pred cCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 62 ~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
..++.+-|+|+|++|+|||||++.+.+.-
T Consensus 24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp ----CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CcCCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 34556799999999999999999997653
No 370
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.29 E-value=0.025 Score=49.02 Aligned_cols=22 Identities=27% Similarity=0.152 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhh
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~l 89 (509)
-|+|+|++|+|||||++.+.+.
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999764
No 371
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.28 E-value=0.017 Score=51.20 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=20.9
Q ss_pred CccEEEEEECCCCCcHHHHHHHHH
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVL 87 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~ 87 (509)
.+.+-|+|+|++|+|||||++.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 456789999999999999988775
No 372
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.27 E-value=0.03 Score=50.52 Aligned_cols=29 Identities=17% Similarity=0.142 Sum_probs=23.6
Q ss_pred cCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 62 ~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
...+.+-|+|+|.+|+|||||++.+.+.-
T Consensus 19 ~~~~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 19 NGKKALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp --CEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccceeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 34556789999999999999999998753
No 373
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.26 E-value=0.024 Score=50.56 Aligned_cols=26 Identities=23% Similarity=0.165 Sum_probs=21.9
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+.+-|+|+|++|+|||||++.+.+.
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34678999999999999999998753
No 374
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.24 E-value=0.007 Score=59.95 Aligned_cols=42 Identities=14% Similarity=0.045 Sum_probs=30.9
Q ss_pred CcEEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 48 GFFIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 48 g~~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
|...+++.+...+..+..+. +.|.||+|+||||+++++++.+
T Consensus 41 g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 41 AQDHAVTVLKKTLKSANLPH-MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp SCCTTHHHHHHHTTCTTCCC-EEEECSTTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCE-EEEECCCCCCHHHHHHHHHHHh
Confidence 33445555655566664233 8899999999999999999886
No 375
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.23 E-value=0.03 Score=49.98 Aligned_cols=25 Identities=20% Similarity=0.307 Sum_probs=22.0
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+-|+|+|++|+|||||++.|.+.-
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4689999999999999999998753
No 376
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.22 E-value=0.027 Score=50.46 Aligned_cols=25 Identities=24% Similarity=0.126 Sum_probs=22.1
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
..+-|+|+|++|+|||||++.+.+.
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 4568899999999999999999875
No 377
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.22 E-value=0.026 Score=56.38 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+.|.||+|+|||||++.+++.+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999887
No 378
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.21 E-value=0.021 Score=55.42 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=22.5
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+|.|.|++||||||+++.|...+
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 399999999999999999999887
No 379
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.21 E-value=0.027 Score=50.96 Aligned_cols=25 Identities=20% Similarity=0.298 Sum_probs=22.2
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
+.+-|+|+|++|+|||||++.+.+.
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CceEEEEECcCCCCHHHHHHHHhcC
Confidence 4668999999999999999999864
No 380
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=94.21 E-value=0.029 Score=58.76 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhh
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~l 89 (509)
.|+|+|++|+|||||+++|.+.
T Consensus 24 kvgIVG~pnvGKSTL~n~Ltg~ 45 (396)
T 2ohf_A 24 KIGIVGLPNVGKSTFFNVLTNS 45 (396)
T ss_dssp CEEEECCSSSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 8999999999999999999876
No 381
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.20 E-value=0.021 Score=56.57 Aligned_cols=25 Identities=28% Similarity=0.289 Sum_probs=22.5
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+..+.|.||+|+|||||++.+++.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3389999999999999999999876
No 382
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.18 E-value=0.027 Score=57.59 Aligned_cols=23 Identities=22% Similarity=0.172 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
-++|+|++||||||+++.|...+
T Consensus 37 ~~~i~G~~G~GKs~~~~~~~~~~ 59 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTAKMLLLRE 59 (392)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEcCCCCCHHHHHHHHHHHH
Confidence 67899999999999999998765
No 383
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.18 E-value=0.026 Score=50.85 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+.|.||+|+||||+++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998875
No 384
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=94.17 E-value=0.017 Score=53.01 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=26.2
Q ss_pred EEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHh
Q 010501 51 IVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (509)
Q Consensus 51 ~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ 88 (509)
.+++++++..+. .-|+|+|++|+|||||++.+.+
T Consensus 14 ~~l~~~~~~~~~----~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 14 SVLQFLGLYKKT----GKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHHTCTTCC----EEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHhhccCCC----cEEEEECCCCCCHHHHHHHHhc
Confidence 456666665443 3689999999999999998864
No 385
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=94.17 E-value=0.023 Score=61.25 Aligned_cols=37 Identities=19% Similarity=0.398 Sum_probs=29.5
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhC--C--CeeEEEECCc
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFM--P--SIAVITMDNY 101 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~ll--p--~~g~I~~D~y 101 (509)
.+.+|.++|.+||||||+++.|+..+ . +.-.++.|++
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 35689999999999999999998876 2 4445777765
No 386
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.16 E-value=0.026 Score=54.01 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=22.3
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+.+.|+|+|++|||||||++.|.+.
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCC
Confidence 44678999999999999999999864
No 387
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=94.16 E-value=0.032 Score=61.75 Aligned_cols=37 Identities=30% Similarity=0.348 Sum_probs=30.0
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhCC--CeeEEEECCc
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVITMDNY 101 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~llp--~~g~I~~D~y 101 (509)
++.+|.|.|.+||||||+++.|+..+. ....+.+|+.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD 89 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 89 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechH
Confidence 567999999999999999999999872 3346667654
No 388
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.10 E-value=0.04 Score=55.31 Aligned_cols=32 Identities=19% Similarity=0.332 Sum_probs=25.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEEC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D 99 (509)
-+.|.||+|+|||+|+++++..+.....+.++
T Consensus 47 ~iLL~GppGtGKT~la~ala~~~~~~~~~~i~ 78 (322)
T 1xwi_A 47 GILLFGPPGTGKSYLAKAVATEANNSTFFSIS 78 (322)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHTTSCEEEEEE
T ss_pred eEEEECCCCccHHHHHHHHHHHcCCCcEEEEE
Confidence 78899999999999999999987433444443
No 389
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=94.10 E-value=0.027 Score=50.64 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.4
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+.+.|+|+|++|+|||||++.+.+.
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34678999999999999999998764
No 390
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.09 E-value=0.03 Score=51.07 Aligned_cols=26 Identities=19% Similarity=0.112 Sum_probs=22.7
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+.+-|+|+|.+|+|||||++.|.+.-
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 45689999999999999999998753
No 391
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.08 E-value=0.03 Score=58.89 Aligned_cols=36 Identities=22% Similarity=0.233 Sum_probs=31.0
Q ss_pred EeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 52 VIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 52 iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.|+.+..-+++|+ ++.|+|++|+|||||+..++...
T Consensus 192 ~LD~~~gGl~~G~---liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 192 ELDRMTSGFQRSD---LIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp HHHHHHSSBCTTC---EEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCC---EEEEECCCCCCHHHHHHHHHHHH
Confidence 4566665678999 99999999999999999998876
No 392
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.08 E-value=0.03 Score=49.37 Aligned_cols=24 Identities=21% Similarity=0.174 Sum_probs=21.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhh
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+-|+|+|++|+|||||++.+.+.
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 457999999999999999999864
No 393
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.07 E-value=0.026 Score=55.94 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+.|.||+|+|||||+++++..+
T Consensus 39 ~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 39 PIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 68899999999999999999876
No 394
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.06 E-value=0.023 Score=55.37 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.6
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.-+.|.||+|+||||++++++..+
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999998876
No 395
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.04 E-value=0.022 Score=53.44 Aligned_cols=22 Identities=23% Similarity=0.383 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhh
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~l 89 (509)
++.|.|++|||||||+..|+..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3789999999999999999865
No 396
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=94.03 E-value=0.022 Score=50.69 Aligned_cols=22 Identities=23% Similarity=0.282 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHhh
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~l 89 (509)
-|+|+|++|+|||||++.+.+.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5889999999999999999864
No 397
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.03 E-value=0.031 Score=53.77 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.2
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
...+-|+|+|.+|+|||||++.|.+.-
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCC
Confidence 446789999999999999999998754
No 398
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.03 E-value=0.034 Score=50.06 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=22.0
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
+.+-|+|+|++|+|||||++.+.+.
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 3568999999999999999999864
No 399
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.01 E-value=0.03 Score=50.16 Aligned_cols=26 Identities=27% Similarity=0.146 Sum_probs=22.5
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+.+-|+|+|++|+|||||++.+.+.
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34678999999999999999999853
No 400
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.00 E-value=0.037 Score=50.09 Aligned_cols=26 Identities=19% Similarity=0.395 Sum_probs=22.3
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+.+-|+|+|++|+|||||++.+.+.
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34678999999999999999999875
No 401
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.98 E-value=0.037 Score=49.99 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=22.1
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+.+-|+|+|.+|+|||||++.+.+.
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhC
Confidence 44678999999999999999988764
No 402
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.95 E-value=0.02 Score=60.36 Aligned_cols=36 Identities=28% Similarity=0.448 Sum_probs=28.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC----CCeeEEEECCc
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNY 101 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll----p~~g~I~~D~y 101 (509)
+.+|+|+|++|+||||++..|+..+ ..+..+..|-|
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 5589999999999999999999887 24555555544
No 403
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=93.92 E-value=0.031 Score=55.02 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=21.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhh
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+.|+|+|++|+|||||++.|.+.
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999875
No 404
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.90 E-value=0.038 Score=50.27 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=21.5
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
..+-|+|+|++|+|||||++.|.+.
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3568999999999999999999864
No 405
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.88 E-value=0.036 Score=53.42 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=23.1
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+.-+.|.||+|+||||++++++..+
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 35578899999999999999999876
No 406
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.88 E-value=0.028 Score=53.61 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
+|.|.|++||||||+++.|...+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999887
No 407
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=93.88 E-value=0.031 Score=49.38 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=22.0
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
+.+-|+|+|.+|+|||||++.+.+.
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999999999874
No 408
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=93.86 E-value=0.037 Score=50.20 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhh
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+-|+|+|++|+|||||++.|.+.
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 567999999999999999999764
No 409
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=93.85 E-value=0.027 Score=53.37 Aligned_cols=25 Identities=28% Similarity=0.492 Sum_probs=20.7
Q ss_pred eecCCccEEEEEECCCCCcHHHHHHHHH
Q 010501 60 AQKNHGIILVGVAGPSGAGKTVFTEKVL 87 (509)
Q Consensus 60 i~~Ge~~iIIgI~GpSGSGKTTLar~L~ 87 (509)
+..|+ .+.|.||+||||||++..+.
T Consensus 73 i~~g~---~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 73 ISQNS---VVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHCS---EEEEECCTTSSHHHHHHHHH
T ss_pred HhcCC---EEEEEeCCCCCcHHhHHHHH
Confidence 35678 99999999999999876654
No 410
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.83 E-value=0.049 Score=55.37 Aligned_cols=36 Identities=17% Similarity=0.125 Sum_probs=29.2
Q ss_pred EEEeeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 50 FIVIRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 50 ~~iLk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
...+++..+.+ .|. -+.|.|+||+||||++..|.+.
T Consensus 132 ~~~~H~~~v~~-~g~---~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 132 TTSLHGVLVDV-YGV---GVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEESEEEEE-TTE---EEEEEESTTSSHHHHHHHHHHT
T ss_pred ceeeeEEEEEE-CCE---EEEEEeCCCCCHHHHHHHHHhc
Confidence 45677766666 566 8999999999999999999874
No 411
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.82 E-value=0.029 Score=50.14 Aligned_cols=26 Identities=23% Similarity=0.067 Sum_probs=21.8
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+.+-|+|+|.+|+|||||++.+.+.
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcC
Confidence 34678999999999999999999864
No 412
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=93.82 E-value=0.048 Score=58.74 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=29.1
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhhC----CCeeEEEECCc
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNFM----PSIAVITMDNY 101 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~ll----p~~g~I~~D~y 101 (509)
.++.+|+|+|++||||||++..|+..+ ..+..+..|-|
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~ 140 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTF 140 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 456799999999999999999999765 24666776654
No 413
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.80 E-value=0.033 Score=56.31 Aligned_cols=23 Identities=30% Similarity=0.670 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
-+.|.||+|+||||++++|+..+
T Consensus 53 ~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 53 NILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 67889999999999999999988
No 414
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=93.79 E-value=0.03 Score=50.29 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=21.8
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 63 NHGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 63 Ge~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.....-|+|+|.+|+|||||++.+.+.
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 345668999999999999999988653
No 415
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=93.77 E-value=0.032 Score=51.12 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=21.2
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHh
Q 010501 63 NHGIILVGVAGPSGAGKTVFTEKVLN 88 (509)
Q Consensus 63 Ge~~iIIgI~GpSGSGKTTLar~L~~ 88 (509)
....+.|+|+|.+|+|||||++.+.+
T Consensus 20 ~~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 20 KDGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CCcEEEEEEECCCCCCHHHHHHHHHh
Confidence 34467899999999999999998854
No 416
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.76 E-value=0.035 Score=50.87 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=21.5
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+.+.|+|+|++|+|||||++.+.+..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35689999999999999999998653
No 417
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=93.75 E-value=0.036 Score=50.45 Aligned_cols=27 Identities=19% Similarity=0.225 Sum_probs=22.8
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+..+-|+|+|++|+|||||++.|.+.-
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHCC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998643
No 418
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=93.74 E-value=0.029 Score=54.60 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=26.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~ 100 (509)
-.||.|++||||||+++.|+..+ ....|++++
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~-g~~~is~gd 41 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKF-GIPQISTGD 41 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH-TCCEECHHH
T ss_pred ceeeECCCCCCHHHHHHHHHHHh-CCCeeechH
Confidence 78999999999999999999877 334555554
No 419
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.71 E-value=0.05 Score=55.92 Aligned_cols=28 Identities=29% Similarity=0.463 Sum_probs=24.9
Q ss_pred eecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 60 i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
++.|. ++.|.|++|||||||+..++...
T Consensus 60 l~~G~---ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGR---IVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTS---EEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCe---EEEEECCCCCCHHHHHHHHHHHH
Confidence 57888 99999999999999998887664
No 420
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.66 E-value=0.039 Score=49.71 Aligned_cols=26 Identities=23% Similarity=0.208 Sum_probs=22.7
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
..+-|+|+|++|+|||||++.+.+.-
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 35689999999999999999998754
No 421
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=93.65 E-value=0.035 Score=51.90 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.5
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+.+.|+|+|++|+|||||++.|.+.
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999998764
No 422
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.65 E-value=0.018 Score=55.14 Aligned_cols=23 Identities=35% Similarity=0.491 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
-+.|.||+|+|||||+++|+..+
T Consensus 46 ~vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 46 GVLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCCBCSSCSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 36789999999999999999876
No 423
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.64 E-value=0.032 Score=53.45 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=23.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPS 92 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~ 92 (509)
+|.|.|++||||||+++.|...+..
T Consensus 7 ~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 7 LILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999998854
No 424
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.63 E-value=0.035 Score=50.75 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=22.0
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
+..+-|+|+|++|+|||||++.|.+.
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 44678999999999999999999754
No 425
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=93.62 E-value=0.039 Score=51.04 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=23.0
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+..+-|+|+|++|+|||||++.+.+..
T Consensus 24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 24 DFLFKIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHhCC
Confidence 446789999999999999999987643
No 426
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.61 E-value=0.036 Score=55.17 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=24.2
Q ss_pred eecCCccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 60 i~~Ge~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
++.|+ ++.|.|++|||||||+..++..
T Consensus 95 l~~g~---i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 95 LESQS---VTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EETTE---EEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCe---EEEEECCCCCCHHHHHHHHHHH
Confidence 47788 9999999999999999988864
No 427
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=93.59 E-value=0.042 Score=55.03 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=28.2
Q ss_pred eeeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 53 IRACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 53 Lk~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
|+.+.-=+++|+ ++.|+|++|+|||||+..++...
T Consensus 58 LD~~lgGl~~G~---l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 58 LDRMTYGYKRRN---FVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHHSSBCTTC---EEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCc---EEEEEeCCCCCHHHHHHHHHHHH
Confidence 444443468899 99999999999999998887654
No 428
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.58 E-value=0.047 Score=50.13 Aligned_cols=27 Identities=30% Similarity=0.316 Sum_probs=23.0
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
++.+-|+|+|++|+|||||++.|.+.-
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCSC
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcCC
Confidence 446789999999999999999998643
No 429
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.57 E-value=0.032 Score=54.00 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
-+.|.||+|+||||++++++..+
T Consensus 52 ~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 52 NILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 67799999999999999999987
No 430
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.55 E-value=0.043 Score=49.66 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=20.9
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
+.+-|+|+|++|+|||||++.+.+.
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4568999999999999999998753
No 431
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=93.53 E-value=0.039 Score=54.01 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
++.|+|+|.+|||||||++.|.+.-
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999998753
No 432
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=93.52 E-value=0.049 Score=49.32 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=21.6
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
+..+-|+|+|++|+|||||++.|.+.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 44567999999999999999998653
No 433
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=93.51 E-value=0.026 Score=50.77 Aligned_cols=26 Identities=23% Similarity=0.183 Sum_probs=21.2
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+.+-|+|+|.+|+|||||++.+.+.
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999988654
No 434
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=93.49 E-value=0.039 Score=51.04 Aligned_cols=26 Identities=23% Similarity=0.204 Sum_probs=22.2
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+++-|+|+|++|+|||||++.+.+.
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcC
Confidence 45678999999999999999999753
No 435
>3bhd_A Thtpase, thiamine triphosphatase; hydrolase, structural genomics consortium, CYTH SGC; HET: MSE CIT; 1.50A {Homo sapiens} PDB: 2jmu_A
Probab=93.48 E-value=0.24 Score=47.81 Aligned_cols=130 Identities=12% Similarity=0.119 Sum_probs=85.0
Q ss_pred eeeEEEeCCCCCccccccceeeeccCceEEEEeeecccCC------CeE--eccccce-------eece---eecccc-c
Q 010501 280 TYDIYLLPPGEDPDACQSYLRMRNRDGKYNLMFEEWVTDS------PFI--ISPRITF-------EVSV---RLLGGL-M 340 (509)
Q Consensus 280 ~~diyl~pp~~~~~~~~~~ir~r~~~~~~~l~~~~~i~~~------~f~--~~P~~~f-------~v~~---~~~~gl-~ 340 (509)
..|+|+.-|+.......-+||.|..+| .+ +..+-..+ -|. ..|.-++ ++.+ ..+..+ .
T Consensus 54 q~n~YfDTpd~~L~~~~~aLRiR~~~~-~t--lK~p~~~g~~~~~~ey~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ 130 (234)
T 3bhd_A 54 FRDTYYDTPELSLMQADHWLRRREDSG-WE--LKCPGAAGVLGPHTEYKELTAEPTIVAQLCKVLRADGLGAGDVAAVLG 130 (234)
T ss_dssp EEEEEEECTTCHHHHTTCEEEEETTTE-EE--EEEESSBTTBCTTSEEEEECSHHHHHHHHHHHHTC---CCSSHHHHHH
T ss_pred EEEEEeeCCChHHHhCCcEEEEECCCC-eE--EecCCccCccCCcceeccccCccchhhhhhhhhcCCccchhHHHHHHh
Confidence 458999999988888889999999886 33 32221111 122 1110000 0000 112222 3
Q ss_pred ccCceEEEEEEeccceeec--------C-cEEEEehhhhhcCcceEEEe-----c----cChhHHHHHHhhhcCccCccc
Q 010501 341 ALGYTIATILKRSSHIFYD--------D-RVCVKTDWLEQLNRKYVQVQ-----G----RDRLYVKYVGEQLGLDGSYVP 402 (509)
Q Consensus 341 ~lgy~~~~~~~r~~~~~~~--------~-~~~~~~~~~~~~~~~~~~~~-----g----~~~~~v~~~~~~l~~~~~~~~ 402 (509)
.+|++++..+.-.-..|.= + .+.|.+|..+ ++.+|.-|- + ..+..+.+++.+|||+....+
T Consensus 131 ~~~l~p~~~~~~~R~~~~l~~~~~~~~~~~~~v~LD~~~-~G~~~~ElElEl~~~~~~~~~~~~l~~la~~Lgl~~~~~~ 209 (234)
T 3bhd_A 131 PLGLQEVASFVTKRSAWKLVLLGADEEEPQLRVDLDTAD-FGYAVGEVEALVHEEAEVPTALEKIHRLSSMLGVPAQETA 209 (234)
T ss_dssp HHTCEEEEEEEEEEEEEEEEGGGGCSSSCEEEEEEEEET-TSCEEEEEEEEESSGGGHHHHHHHHHHHHHHHTCCTTCCC
T ss_pred cCCCEEEEEEEEEEEEEEEcccCCccCCCeEEEEEeccc-CCCEEEEEEEEeCCcccchHHHHHHHHHHHHcCCCccccc
Confidence 4788877766555555544 5 8999999999 998898876 2 345678899999999999999
Q ss_pred hhHHHHHHHhhh
Q 010501 403 RTYIEQIQLEKL 414 (509)
Q Consensus 403 ~~y~~~~~~~~~ 414 (509)
++|++.. |+.+
T Consensus 210 ~~k~~~~-l~~~ 220 (234)
T 3bhd_A 210 PAKLIVY-LQRF 220 (234)
T ss_dssp CCHHHHH-HHHH
T ss_pred hHHHHHH-HHHh
Confidence 9999766 4443
No 436
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.48 E-value=0.045 Score=51.98 Aligned_cols=38 Identities=24% Similarity=0.489 Sum_probs=29.1
Q ss_pred cCCccEEEEEECCCCCcHHHHHHHHHhhCC---CeeEEEEC
Q 010501 62 KNHGIILVGVAGPSGAGKTVFTEKVLNFMP---SIAVITMD 99 (509)
Q Consensus 62 ~Ge~~iIIgI~GpSGSGKTTLar~L~~llp---~~g~I~~D 99 (509)
.|.++.++.+.|..|+||||++..|+..+. .+..|..|
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D 50 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD 50 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 456678999999999999999999986542 34455544
No 437
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.47 E-value=0.044 Score=50.26 Aligned_cols=25 Identities=20% Similarity=0.017 Sum_probs=21.9
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.++-|+|+|++|+|||||++.+.+.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcC
Confidence 3558999999999999999999874
No 438
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.39 E-value=0.019 Score=53.00 Aligned_cols=25 Identities=28% Similarity=0.206 Sum_probs=21.9
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
..+.|+|+|.+|+|||||++.|.+.
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999775
No 439
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=93.37 E-value=0.047 Score=53.10 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+.|+|+|.+|+|||||++.|.+.-
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCC
Confidence 4679999999999999999998743
No 440
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=93.36 E-value=0.03 Score=56.83 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.7
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+...|+|+|++|+|||||++.|.+..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 35589999999999999999998754
No 441
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.35 E-value=0.03 Score=49.66 Aligned_cols=25 Identities=24% Similarity=0.204 Sum_probs=11.3
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
..+-|+|+|++|+|||||++.+.+.
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3568999999999999999988653
No 442
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=93.30 E-value=0.048 Score=50.45 Aligned_cols=26 Identities=23% Similarity=0.137 Sum_probs=22.5
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
...+-|+|+|++|+|||||++.+.+.
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34678999999999999999999875
No 443
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=93.29 E-value=0.058 Score=49.18 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhh
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+-|+|+|.+|+|||||++.+.+.
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999999863
No 444
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=93.28 E-value=0.051 Score=54.16 Aligned_cols=25 Identities=20% Similarity=0.391 Sum_probs=22.3
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+-.|+|+|.+|+|||||++.|.+.
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3559999999999999999999875
No 445
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.28 E-value=0.05 Score=48.93 Aligned_cols=25 Identities=24% Similarity=0.189 Sum_probs=22.0
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
..+-|+|+|++|+|||||++.+.+.
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999865
No 446
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.23 E-value=0.035 Score=58.26 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=21.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.-+.|.||+|+|||||+++|++.+
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 378899999999999999999876
No 447
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=93.19 E-value=0.042 Score=49.93 Aligned_cols=30 Identities=17% Similarity=0.115 Sum_probs=22.4
Q ss_pred ecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 61 QKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 61 ~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
..+++.+-|.|+|.+|+|||||++.+.+.+
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCC
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcC
Confidence 344556789999999999999999887754
No 448
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=93.16 E-value=0.039 Score=54.78 Aligned_cols=25 Identities=28% Similarity=0.263 Sum_probs=22.3
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+..+.|.||+|+||||+++.++..+
T Consensus 44 ~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 44 PSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3388999999999999999998876
No 449
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.13 E-value=0.051 Score=54.20 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=21.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhh
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
...|+|+|.+|+|||||++.|.+.
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999875
No 450
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=93.13 E-value=0.049 Score=52.62 Aligned_cols=27 Identities=22% Similarity=0.313 Sum_probs=23.6
Q ss_pred CCccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 63 NHGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 63 Ge~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
+.+.+.|+|+|.+|+|||||++.|.+.
T Consensus 33 ~~~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 33 DMNSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp TCCEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 345678999999999999999999875
No 451
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.11 E-value=0.058 Score=49.38 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=22.9
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+..+-|+|+|++|+|||||++.+.+.-
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhCC
Confidence 446789999999999999999997643
No 452
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.10 E-value=0.05 Score=49.42 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=21.6
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLN 88 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~ 88 (509)
.+.+-|+|+|++|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 4467899999999999999998854
No 453
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=93.10 E-value=0.054 Score=49.41 Aligned_cols=25 Identities=16% Similarity=0.013 Sum_probs=21.9
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
..+-|+|+|.+|+|||||++.+.+.
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3568999999999999999999874
No 454
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.09 E-value=0.054 Score=49.70 Aligned_cols=26 Identities=23% Similarity=0.146 Sum_probs=21.7
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+.+-|+|+|.+|+|||||++.+...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 44678999999999999999998864
No 455
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=93.00 E-value=0.057 Score=52.30 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=24.0
Q ss_pred cCCccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 62 KNHGIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 62 ~Ge~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+.+.+.|+++|.+|+|||||++.|.+.
T Consensus 35 ~~~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 35 EDVNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp TTCCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3445779999999999999999999864
No 456
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=93.00 E-value=0.053 Score=54.98 Aligned_cols=23 Identities=26% Similarity=0.613 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
-+.|.||+|+||||++++|+..+
T Consensus 74 ~ill~Gp~GtGKT~la~~la~~l 96 (376)
T 1um8_A 74 NILLIGPTGSGKTLMAQTLAKHL 96 (376)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999988
No 457
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=92.99 E-value=0.053 Score=53.68 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=22.4
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+.-+.|.||+|+||||+++.++..+
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~ 79 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEM 79 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999887
No 458
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.97 E-value=0.065 Score=50.44 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHhh
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~l 89 (509)
-|.|.|+||+||||++..|...
T Consensus 18 gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 18 GVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHc
Confidence 7899999999999999988774
No 459
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.95 E-value=0.059 Score=56.86 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=23.3
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+.+|.++|.+||||||+++.|+..+
T Consensus 38 ~~~~IvlvGlpGsGKSTia~~La~~l 63 (469)
T 1bif_A 38 CPTLIVMVGLPARGKTYISKKLTRYL 63 (469)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999999875
No 460
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=92.92 E-value=0.05 Score=58.16 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
=+.|.||+|+|||||++++++..
T Consensus 51 gvLL~GppGtGKT~Laraia~~~ 73 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGEA 73 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 37799999999999999999876
No 461
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=92.92 E-value=0.062 Score=58.05 Aligned_cols=31 Identities=23% Similarity=0.186 Sum_probs=25.9
Q ss_pred eeceeeecCCccEEEEEECCCCCcHHHHHHHHHh
Q 010501 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLN 88 (509)
Q Consensus 55 ~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ 88 (509)
.+.+.+.++. -++|+|++||||||+++.|..
T Consensus 159 pv~ldL~~~p---HlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 159 PVVADLAKMP---HLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp EEEEEGGGSC---SEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEcccCc---eEEEECCCCCCHHHHHHHHHH
Confidence 3556666777 899999999999999999875
No 462
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=92.91 E-value=0.086 Score=55.34 Aligned_cols=33 Identities=18% Similarity=0.297 Sum_probs=26.0
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCCCeeEEEEC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D 99 (509)
.-+.|.||+|+|||||+++++..+.....+.++
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~ 200 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 200 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe
Confidence 478899999999999999999987433444443
No 463
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.90 E-value=0.058 Score=51.66 Aligned_cols=24 Identities=21% Similarity=0.385 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp 91 (509)
-+.|.|++|+|||++++.|+...+
T Consensus 31 ~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 31 PVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CEEEECCTTSCHHHHHHHHHHTST
T ss_pred CEEEECCCCCcHHHHHHHHHHhcC
Confidence 677999999999999999998874
No 464
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=92.89 E-value=0.055 Score=54.05 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.8
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+..+.|.||+|+|||||++.++..+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34489999999999999999998875
No 465
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=92.88 E-value=0.037 Score=56.70 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=20.0
Q ss_pred EEEEEECCCCCcHHHHHHHHHhh
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~l 89 (509)
+-|+|+|++|+|||||++.|.+.
T Consensus 38 ~~I~vvG~~g~GKSTLln~L~~~ 60 (361)
T 2qag_A 38 FTLMVVGESGLGKSTLINSLFLT 60 (361)
T ss_dssp ECEEECCCTTSCHHHHHHHHTTC
T ss_pred EEEEEEcCCCCCHHHHHHHHhCC
Confidence 45799999999999999998664
No 466
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=92.85 E-value=0.057 Score=54.81 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=22.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+.-+.|.||+|+|||||+++|+..+
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4478999999999999999999987
No 467
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.84 E-value=0.051 Score=51.35 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
+|.|-|+-||||||+++.|...+
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L 26 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRL 26 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 78999999999999999999887
No 468
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.78 E-value=0.044 Score=52.86 Aligned_cols=23 Identities=26% Similarity=0.605 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+.|.||+|+||||++.+|+..+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999987
No 469
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.78 E-value=0.055 Score=53.88 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=22.0
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.-+.|.||+|+|||+|+++++..+
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHH
Confidence 468999999999999999999886
No 470
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.78 E-value=0.047 Score=58.94 Aligned_cols=26 Identities=4% Similarity=0.001 Sum_probs=23.9
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMP 91 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp 91 (509)
..+|.+.|.+||||||++++|+..+.
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHH
Confidence 45999999999999999999999984
No 471
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=92.78 E-value=0.052 Score=58.90 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=24.0
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
..+.+|.+.|++||||||+++.|...+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHh
Confidence 345699999999999999999999876
No 472
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=92.76 E-value=0.069 Score=52.09 Aligned_cols=24 Identities=17% Similarity=0.263 Sum_probs=22.1
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+|||+|+.||||||+++.|...+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~ 25 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 489999999999999999998865
No 473
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=92.70 E-value=0.029 Score=50.64 Aligned_cols=24 Identities=21% Similarity=0.224 Sum_probs=5.7
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhh
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+-|+|+|++|+|||||++.+.+.
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 458999999999999999988765
No 474
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=92.68 E-value=0.046 Score=60.61 Aligned_cols=28 Identities=32% Similarity=0.430 Sum_probs=24.0
Q ss_pred eecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 60 i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
++.+. .|+|+|++|+|||||++.|.+..
T Consensus 6 ~~~~~---~i~IiG~~gaGKTTLl~~L~~~~ 33 (665)
T 2dy1_A 6 GAMIR---TVALVGHAGSGKTTLTEALLYKT 33 (665)
T ss_dssp CCCEE---EEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCc---EEEEECCCCChHHHHHHHHHHhc
Confidence 34555 99999999999999999999665
No 475
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.66 E-value=0.046 Score=48.96 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=20.9
Q ss_pred CccEEEEEECCCCCcHHHHHHHHH
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVL 87 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~ 87 (509)
.+.+-|+|+|++|+|||||++.+.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 456789999999999999998874
No 476
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=92.64 E-value=0.054 Score=53.08 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=21.3
Q ss_pred EEEEEECCCCCcHHHHHHHHHhh
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~l 89 (509)
..|+|+|.+|||||||++.|.+.
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~ 47 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGR 47 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTS
T ss_pred CeEEEEcCCCCCHHHHHHHHHCC
Confidence 48999999999999999999886
No 477
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=92.62 E-value=0.07 Score=48.75 Aligned_cols=25 Identities=20% Similarity=0.109 Sum_probs=21.8
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
..+-|+|+|++|+|||||++.+.+.
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999998764
No 478
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=92.59 E-value=0.079 Score=49.19 Aligned_cols=27 Identities=19% Similarity=0.255 Sum_probs=22.8
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+..+-|+|+|++|+|||||++.|.+.-
T Consensus 11 ~~~~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 11 DLLFKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp CEEEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred CeeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998753
No 479
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=92.58 E-value=0.054 Score=54.11 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=22.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMP 91 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp 91 (509)
..+.|.||+|+||||+++.++..+.
T Consensus 71 ~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 71 RAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3789999999999999999998873
No 480
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.56 E-value=0.088 Score=55.60 Aligned_cols=33 Identities=33% Similarity=0.432 Sum_probs=25.8
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~ 100 (509)
.=|.+.||+|+|||+|++++++.+ ..-.+.+++
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~~-~~~~~~v~~ 239 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANST-KAAFIRVNG 239 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHHH-TCEEEEEEG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh-CCCeEEEec
Confidence 358899999999999999999987 333444443
No 481
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=92.54 E-value=0.057 Score=50.55 Aligned_cols=23 Identities=17% Similarity=0.482 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
+|.|-|+-||||||.++.|+..+
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L 24 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999887
No 482
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=92.47 E-value=0.064 Score=52.17 Aligned_cols=24 Identities=25% Similarity=0.346 Sum_probs=20.6
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhh
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
.+-|+|+|.+|+|||||++.|.+.
T Consensus 8 ~~~I~vvG~~g~GKSTLin~L~~~ 31 (274)
T 3t5d_A 8 EFTLMVVGESGLGKSTLINSLFLT 31 (274)
T ss_dssp EEEEEEEECTTSSHHHHHHHHSSS
T ss_pred EEEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999987543
No 483
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=92.46 E-value=0.057 Score=52.50 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
.|+|+|.+|||||||++.|.+.-
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999998753
No 484
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.43 E-value=0.026 Score=49.62 Aligned_cols=24 Identities=13% Similarity=-0.002 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMP 91 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp 91 (509)
-|.|.|++|+|||++|+.|....+
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTTS
T ss_pred cEEEECCCCccHHHHHHHHHHhCC
Confidence 477899999999999999977653
No 485
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.34 E-value=0.068 Score=55.26 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHhh
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~l 89 (509)
.|+|+|++|+|||||+++|.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 486
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=92.28 E-value=0.1 Score=54.00 Aligned_cols=22 Identities=18% Similarity=0.357 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHhh
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~l 89 (509)
.|+|+|.+|+|||||+++|.+.
T Consensus 4 kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 4 KCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999884
No 487
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=92.25 E-value=0.092 Score=48.70 Aligned_cols=25 Identities=16% Similarity=0.126 Sum_probs=21.6
Q ss_pred ccEEEEEECCCCCcHHHHHHHHHhh
Q 010501 65 GIILVGVAGPSGAGKTVFTEKVLNF 89 (509)
Q Consensus 65 ~~iIIgI~GpSGSGKTTLar~L~~l 89 (509)
..+-|.|+|.+|+|||||++.+.+.
T Consensus 26 ~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 26 ARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3568999999999999999998764
No 488
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=92.23 E-value=0.095 Score=55.63 Aligned_cols=31 Identities=23% Similarity=0.472 Sum_probs=24.7
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCCeeEEEEC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPSIAVITMD 99 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~~g~I~~D 99 (509)
-|.+.||+|+||||++++|+..++ ...+.++
T Consensus 52 ~iLl~GppGtGKT~lar~lA~~l~-~~~~~v~ 82 (444)
T 1g41_A 52 NILMIGPTGVGKTEIARRLAKLAN-APFIKVE 82 (444)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT-CCEEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHcC-CCceeec
Confidence 578899999999999999999983 2334444
No 489
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.20 E-value=0.1 Score=55.24 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=26.2
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~ 100 (509)
|.=|.+.||+|+|||+||+++++.+ ..-.+.+++
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~e~-~~~f~~v~~ 248 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAAQT-NATFLKLAA 248 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHH-TCEEEEEEG
T ss_pred CCeeEEECcCCCCHHHHHHHHHHHh-CCCEEEEeh
Confidence 4468899999999999999999987 333444443
No 490
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=92.19 E-value=0.035 Score=51.00 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.1
Q ss_pred CccEEEEEECCCCCcHHHHHHHHHh
Q 010501 64 HGIILVGVAGPSGAGKTVFTEKVLN 88 (509)
Q Consensus 64 e~~iIIgI~GpSGSGKTTLar~L~~ 88 (509)
+..+-|+|+|.+|+|||||++.|.+
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred cCccEEEEECCCCCCHHHHHHHHhc
Confidence 3467899999999999999988764
No 491
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=92.18 E-value=0.018 Score=57.47 Aligned_cols=31 Identities=16% Similarity=0.076 Sum_probs=24.9
Q ss_pred eecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 60 i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+..+..+..+.|.||+|+||||+++.++..+
T Consensus 32 l~~~~~~~~~ll~G~~G~GKT~la~~la~~l 62 (373)
T 1jr3_A 32 LSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62 (373)
T ss_dssp HHHTCCCSEEEEESCTTSSHHHHHHHHHHHH
T ss_pred HHhCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3444434478999999999999999999876
No 492
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=92.15 E-value=0.074 Score=54.03 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
-|.|.||+|+|||||+++++..+
T Consensus 86 ~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 86 GILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHh
Confidence 57889999999999999999987
No 493
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.13 E-value=0.064 Score=52.84 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=28.4
Q ss_pred eeeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 54 RACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 54 k~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+.+.-.+..+..+.++.+.||+|+||||++++++..+
T Consensus 36 ~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l 72 (324)
T 3u61_B 36 ETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV 72 (324)
T ss_dssp HHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh
Confidence 3333344455555688899999999999999999988
No 494
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.07 E-value=0.066 Score=51.84 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=22.1
Q ss_pred cEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 66 IILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 66 ~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
...|+|+|.+|+|||||++.|.+.-
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 4589999999999999999998763
No 495
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=92.06 E-value=0.11 Score=54.65 Aligned_cols=33 Identities=27% Similarity=0.391 Sum_probs=25.7
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhCCCeeEEEECC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFMPSIAVITMDN 100 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~llp~~g~I~~D~ 100 (509)
.=|.+.||+|+|||+||+++++.+ ..-.+.+++
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e~-~~~f~~v~~ 215 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHHT-DCKFIRVSG 215 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHHH-TCEEEEEEG
T ss_pred CceEEeCCCCCCHHHHHHHHHHhh-CCCceEEEh
Confidence 357899999999999999999987 333444443
No 496
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=91.94 E-value=0.052 Score=53.63 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhhCCC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFMPS 92 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~llp~ 92 (509)
-+.|.||+|+|||++++.++..++.
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCcc
Confidence 3889999999999999999998853
No 497
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=91.93 E-value=0.06 Score=52.69 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHhhC
Q 010501 68 LVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 68 IIgI~GpSGSGKTTLar~L~~ll 90 (509)
.+.|.||+|+||||+++.++..+
T Consensus 40 ~vll~G~~GtGKT~la~~i~~~~ 62 (324)
T 1hqc_A 40 HLLLFGPPGLGKTTLAHVIAHEL 62 (324)
T ss_dssp CCEEECCTTCCCHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 68899999999999999998876
No 498
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=91.90 E-value=0.069 Score=52.89 Aligned_cols=34 Identities=15% Similarity=0.089 Sum_probs=26.1
Q ss_pred eeceeeecCCccEEEEEECCCCCcHHHHHHHHHhhCC
Q 010501 55 ACQLLAQKNHGIILVGVAGPSGAGKTVFTEKVLNFMP 91 (509)
Q Consensus 55 ~IsL~i~~Ge~~iIIgI~GpSGSGKTTLar~L~~llp 91 (509)
.+...+..+. -+.|.||+|+|||+|++.++..++
T Consensus 38 ~l~~~l~~~~---~vll~G~pGtGKT~la~~la~~~~ 71 (331)
T 2r44_A 38 RLLIGICTGG---HILLEGVPGLAKTLSVNTLAKTMD 71 (331)
T ss_dssp HHHHHHHHTC---CEEEESCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCC---eEEEECCCCCcHHHHHHHHHHHhC
Confidence 3333334455 678899999999999999999883
No 499
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.88 E-value=0.12 Score=54.74 Aligned_cols=24 Identities=33% Similarity=0.468 Sum_probs=22.1
Q ss_pred EEEEEECCCCCcHHHHHHHHHhhC
Q 010501 67 ILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 67 iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
.=|.+.||+|+|||+|+++|++.+
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 368899999999999999999987
No 500
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.87 E-value=0.086 Score=55.22 Aligned_cols=28 Identities=21% Similarity=0.194 Sum_probs=25.3
Q ss_pred eecCCccEEEEEECCCCCcHHHHHHHHHhhC
Q 010501 60 AQKNHGIILVGVAGPSGAGKTVFTEKVLNFM 90 (509)
Q Consensus 60 i~~Ge~~iIIgI~GpSGSGKTTLar~L~~ll 90 (509)
+++|+ ++.|+|++|+|||||+..++...
T Consensus 197 l~~G~---l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 197 LGPGS---LNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp CCTTC---EEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCc---EEEEEeCCCCCHHHHHHHHHHHH
Confidence 57899 99999999999999999888765
Done!