BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010504
(508 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NPP|B Chain B, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|E Chain E, Structure Of The Protein Phosphatase 2a Holoenzyme
Length = 449
Score = 482 bits (1241), Expect = e-136, Method: Compositional matrix adjust.
Identities = 238/427 (55%), Positives = 310/427 (72%), Gaps = 4/427 (0%)
Query: 80 NGNSVVAPYEALPGFRDVASFEKQNLLIRKLNLCCVLFDF-TDPTKNLKEKDVKRQTLLE 138
N N P L RDV +++ L I+KL CCVLFDF +DP +LK K+VKR L E
Sbjct: 17 NSNGPFQPV-VLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSE 75
Query: 139 LVDFITSANGKFTETVMQEVIKMVSVNLFRSLSPQPRENKTLESFDLEEEEPLMDPAWPH 198
+V++IT TE + EV+ M +VN+FR+L P N T FD EE+EP ++ AWPH
Sbjct: 76 MVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPS--SNPTGAEFDPEEDEPTLEAAWPH 133
Query: 199 LQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKF 258
LQ+VYEFFLRF+ SP+ +AK+YID FVL+LL+LFDSEDPRER++LKT LHRIYGKF
Sbjct: 134 LQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKF 193
Query: 259 MVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIP 318
+ R +IRK INNIF+RFI+ETE HNGIAELLE+LGSIINGFALPLKEEHK+FL++ L+P
Sbjct: 194 LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLP 253
Query: 319 LHKPKCLAMYHQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLE 378
LHK K L++YH L+YC+ QF+EKD L + V+ LLKYWP T+S KEVMFL+ELEE+L+
Sbjct: 254 LHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILD 313
Query: 379 ATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVILPIIFPA 438
+P EF K M PLFRQ+A C+SS HFQVAERALY WNN++I +LI N ILPI+FP+
Sbjct: 314 VIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPS 373
Query: 439 LEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQKFKESEAKVEEIRTQCDASWKRL 498
L +N HWN+ + L N K+F E++ +LFD+C Q+FK + K + + + +W ++
Sbjct: 374 LYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKI 433
Query: 499 EEIAAAN 505
E +A AN
Sbjct: 434 ENLAKAN 440
>pdb|2IAE|B Chain B, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|E Chain E, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme
Length = 407
Score = 475 bits (1223), Expect = e-134, Method: Compositional matrix adjust.
Identities = 231/408 (56%), Positives = 303/408 (74%), Gaps = 3/408 (0%)
Query: 95 RDVASFEKQNLLIRKLNLCCVLFDF-TDPTKNLKEKDVKRQTLLELVDFITSANGKFTET 153
RDV +++ L I+KL CCVLFDF +DP +LK K+VKR L E+V++IT TE
Sbjct: 2 RDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEP 61
Query: 154 VMQEVIKMVSVNLFRSLSPQPRENKTLESFDLEEEEPLMDPAWPHLQIVYEFFLRFVASP 213
+ EV+ M +VN+FR+L P N T FD EE+EP ++ AWPHLQ+VYEFFLRF+ SP
Sbjct: 62 IYPEVVHMFAVNMFRTLPPS--SNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESP 119
Query: 214 ETDAKLAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIF 273
+ +AK+YID FVL+LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNIF
Sbjct: 120 DFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIF 179
Query: 274 FRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIPLHKPKCLAMYHQPLS 333
+RFI+ETE HNGIAELLE+LGSIINGFALPLKEEHK+FL++ L+PLHK K L++YH L+
Sbjct: 180 YRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLA 239
Query: 334 YCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLF 393
YC+ QF+EKD L + V+ LLKYWP T+S KEVMFL+ELEE+L+ +P EF K M PLF
Sbjct: 240 YCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLF 299
Query: 394 RQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQN 453
RQ+A C+SS HFQVAERALY WNN++I +LI N ILPI+FP+L +N HWN+ +
Sbjct: 300 RQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHG 359
Query: 454 LTVNVRKIFSEIDPELFDECLQKFKESEAKVEEIRTQCDASWKRLEEI 501
L N K+F E++ +LFD+C Q+FK + K + + + +W ++E +
Sbjct: 360 LIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENL 407
>pdb|3FGA|B Chain B, Structural Basis Of Pp2a And Sgo Interaction
Length = 403
Score = 471 bits (1212), Expect = e-133, Method: Compositional matrix adjust.
Identities = 228/402 (56%), Positives = 300/402 (74%), Gaps = 3/402 (0%)
Query: 101 EKQNLLIRKLNLCCVLFDF-TDPTKNLKEKDVKRQTLLELVDFITSANGKFTETVMQEVI 159
+++ L I+KL CCVLFDF +DP +LK K+VKR L E+V++IT TE + EV+
Sbjct: 4 DQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVV 63
Query: 160 KMVSVNLFRSLSPQPRENKTLESFDLEEEEPLMDPAWPHLQIVYEFFLRFVASPETDAKL 219
M +VN+FR+L P N T FD EE+EP ++ AWPHLQ+VYEFFLRF+ SP+ +
Sbjct: 64 HMFAVNMFRTLPPS--SNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNI 121
Query: 220 AKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFE 279
AK+YID FVL+LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNIF+RFI+E
Sbjct: 122 AKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYE 181
Query: 280 TEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIPLHKPKCLAMYHQPLSYCITQF 339
TE HNGIAELLE+LGSIINGFALPLKEEHK+FL++ L+PLHK K L++YH L+YC+ QF
Sbjct: 182 TEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQF 241
Query: 340 VEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASC 399
+EKD L + V+ LLKYWP T+S KEVMFL+ELEE+L+ +P EF K M PLFRQ+A C
Sbjct: 242 LEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKC 301
Query: 400 LSSSHFQVAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVR 459
+SS HFQVAERALY WNN++I +LI N ILPI+FP+L +N HWN+ + L N
Sbjct: 302 VSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNAL 361
Query: 460 KIFSEIDPELFDECLQKFKESEAKVEEIRTQCDASWKRLEEI 501
K+F E++ +LFD+C Q+FK + K + + + +W ++E +
Sbjct: 362 KLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWVKIENL 403
>pdb|2NYL|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|B Chain B, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|E Chain E, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 388
Score = 458 bits (1179), Expect = e-129, Method: Compositional matrix adjust.
Identities = 222/378 (58%), Positives = 281/378 (74%), Gaps = 3/378 (0%)
Query: 102 KQNLLIRKLNLCCVLFDF-TDPTKNLKEKDVKRQTLLELVDFITSANGKFTETVMQEVIK 160
++ L I+KL CCVLFDF +DP +LK K+VKR L E V++IT TE + EV+
Sbjct: 1 QEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEXVEYITHNRNVITEPIYPEVVH 60
Query: 161 MVSVNLFRSLSPQPRENKTLESFDLEEEEPLMDPAWPHLQIVYEFFLRFVASPETDAKLA 220
+VN FR+L P N T FD EE+EP ++ AWPHLQ+VYEFFLRF+ SP+ +A
Sbjct: 61 XFAVNXFRTLPPS--SNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIA 118
Query: 221 KRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFET 280
K+YID FVL+LL+LFDSEDPRER++LKT LHRIYGKF+ R +IRK INNIF+RFI+ET
Sbjct: 119 KKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYET 178
Query: 281 EKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIPLHKPKCLAMYHQPLSYCITQFV 340
E HNGIAELLE+LGSIINGFALPLKEEHK+FL++ L+PLHK K L++YH L+YC+ QF+
Sbjct: 179 EHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCVVQFL 238
Query: 341 EKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCL 400
EKD L + V+ LLKYWP T+S KEV FL+ELEE+L+ +P EF K PLFRQ+A C+
Sbjct: 239 EKDSTLTEPVVXALLKYWPKTHSPKEVXFLNELEEILDVIEPSEFVKIXEPLFRQLAKCV 298
Query: 401 SSSHFQVAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVRK 460
SS HFQVAERALY WNN++I +LI N ILPI FP+L +N HWN+ + L N K
Sbjct: 299 SSPHFQVAERALYYWNNEYIXSLISDNAAKILPIXFPSLYRNSKTHWNKTIHGLIYNALK 358
Query: 461 IFSEIDPELFDECLQKFK 478
+F E + +LFD+C Q+FK
Sbjct: 359 LFXEXNQKLFDDCTQQFK 376
>pdb|2JAK|A Chain A, Human Pp2a Regulatory Subunit B56g
Length = 392
Score = 441 bits (1133), Expect = e-124, Method: Compositional matrix adjust.
Identities = 217/365 (59%), Positives = 273/365 (74%), Gaps = 4/365 (1%)
Query: 80 NGNSVVAPYEALPGFRDVASFEKQNLLIRKLNLCCVLFDF-TDPTKNLKEKDVKRQTLLE 138
N N P L RDV +++ L I+KL CCVLFDF +DP +LK K+VKR L E
Sbjct: 29 NSNGPFQPV-VLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSE 87
Query: 139 LVDFITSANGKFTETVMQEVIKMVSVNLFRSLSPQPRENKTLESFDLEEEEPLMDPAWPH 198
+V++IT TE + EV+ M +VN+FR+L P N T FD EE+EP ++ AWPH
Sbjct: 88 MVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPS--SNPTGAEFDPEEDEPTLEAAWPH 145
Query: 199 LQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKF 258
LQ+VYEFFLRF+ SP+ +AK+YID FVL+LL+LFDSEDPRER++LKT LHRIYGKF
Sbjct: 146 LQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYGKF 205
Query: 259 MVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIP 318
+ R +IRK INNIF+RFI+ETE HNGIAELLE+LGSIINGFALPLKEEHK+FL++ L+P
Sbjct: 206 LGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLP 265
Query: 319 LHKPKCLAMYHQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLE 378
LHK K L++YH L+YC+ QF+EKD L + V+ LLKYWP T+S KEVMFL+ELEE+L+
Sbjct: 266 LHKVKSLSVYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILD 325
Query: 379 ATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVILPIIFPA 438
+P EF K M PLFRQ+A C+SS HFQVAERALY WNN++I +LI N ILPI+FP+
Sbjct: 326 VIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWNNEYIMSLISDNAAKILPIMFPS 385
Query: 439 LEKNG 443
L +N
Sbjct: 386 LYRNS 390
>pdb|3GPI|A Chain A, Structure Of Putative Nad-Dependent EpimeraseDEHYDRATASE
From Methylobacillus Flagellatus
Length = 286
Score = 29.3 bits (64), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 47 VNTDHMPLPGFDSASNLGDGQGSKFPQVGNPRLNGN 82
+ TD+ PLP D L D QG +P P + GN
Sbjct: 211 IVTDNQPLPVHDLLRWLADRQGIAYPAGATPPVQGN 246
>pdb|4B4T|S Chain S, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 523
Score = 28.9 bits (63), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 412 LYLWNNDHIENLIRQNRKVILP 433
L+LW++ +E L+ NRKV++P
Sbjct: 144 LFLWDSKELEQLVEFNRKVVIP 165
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,131,381
Number of Sequences: 62578
Number of extensions: 566716
Number of successful extensions: 1226
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1208
Number of HSP's gapped (non-prelim): 11
length of query: 508
length of database: 14,973,337
effective HSP length: 103
effective length of query: 405
effective length of database: 8,527,803
effective search space: 3453760215
effective search space used: 3453760215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)