Query 010504
Match_columns 508
No_of_seqs 162 out of 295
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 01:18:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2085 Serine/threonine prote 100.0 2E-164 4E-169 1257.9 39.2 418 85-506 39-456 (457)
2 PF01603 B56: Protein phosphat 100.0 2E-131 4E-136 1040.6 29.3 407 90-503 1-409 (409)
3 PLN00122 serine/threonine prot 100.0 1E-39 2.3E-44 306.8 13.0 134 341-507 35-168 (170)
4 PLN00122 serine/threonine prot 97.8 0.00018 3.9E-09 68.7 10.3 36 75-110 32-67 (170)
5 PF01602 Adaptin_N: Adaptin N 87.8 11 0.00024 40.6 14.2 175 229-416 341-520 (526)
6 PF14500 MMS19_N: Dos2-interac 75.2 54 0.0012 33.5 12.7 77 328-411 120-209 (262)
7 KOG1060 Vesicle coat complex A 73.6 54 0.0012 38.7 13.2 155 303-478 316-472 (968)
8 PF12348 CLASP_N: CLASP N term 71.1 43 0.00094 32.2 10.5 104 361-467 19-126 (228)
9 PF05918 API5: Apoptosis inhib 64.4 96 0.0021 35.3 12.7 88 328-415 241-340 (556)
10 PF04388 Hamartin: Hamartin pr 59.9 1.7E+02 0.0037 33.9 14.1 150 229-400 6-161 (668)
11 PF01417 ENTH: ENTH domain; I 59.3 46 0.001 29.7 7.6 91 373-464 24-121 (125)
12 KOG2175 Protein predicted to b 51.5 1.9E+02 0.0041 32.2 12.0 152 300-475 80-253 (458)
13 KOG2171 Karyopherin (importin) 39.1 5.1E+02 0.011 32.0 13.8 72 387-463 344-417 (1075)
14 PF08389 Xpo1: Exportin 1-like 37.0 2.5E+02 0.0055 24.5 8.7 104 345-461 7-112 (148)
15 PF12783 Sec7_N: Guanine nucle 34.6 3.3E+02 0.0071 25.3 9.4 105 370-477 43-158 (168)
16 cd03571 ENTH_epsin ENTH domain 34.6 1.3E+02 0.0029 27.3 6.5 89 373-464 22-118 (123)
17 PF12755 Vac14_Fab1_bd: Vacuol 34.2 1.8E+02 0.004 25.2 7.1 72 386-463 22-96 (97)
18 KOG0949 Predicted helicase, DE 34.0 2.1E+02 0.0046 35.1 9.4 102 393-502 804-914 (1330)
19 KOG2188 Predicted RNA-binding 31.6 5.1E+02 0.011 30.1 11.6 230 232-484 320-584 (650)
20 COG5215 KAP95 Karyopherin (imp 31.2 1.9E+02 0.0041 33.5 8.1 103 391-503 263-388 (858)
21 PF06757 Ins_allergen_rp: Inse 31.1 2.9E+02 0.0063 26.3 8.6 56 369-426 103-164 (179)
22 PF14724 mit_SMPDase: Mitochon 30.4 4.2E+02 0.009 31.6 11.0 116 347-467 370-530 (765)
23 cd07920 Pumilio Pumilio-family 30.2 5.8E+02 0.013 25.7 14.7 71 343-415 141-212 (322)
24 PF08767 CRM1_C: CRM1 C termin 29.0 6.9E+02 0.015 26.1 11.9 74 323-415 109-189 (319)
25 smart00582 RPR domain present 28.3 97 0.0021 27.1 4.5 82 337-418 20-108 (121)
26 PF03378 CAS_CSE1: CAS/CSE pro 28.2 75 0.0016 34.9 4.5 106 194-319 195-302 (435)
27 cd03562 CID CID (CTD-Interacti 26.3 2.7E+02 0.0059 24.1 6.9 88 331-418 19-109 (114)
28 PF08167 RIX1: rRNA processing 26.2 4.9E+02 0.011 24.4 9.1 50 227-276 67-117 (165)
29 PF03378 CAS_CSE1: CAS/CSE pro 25.9 7.3E+02 0.016 27.4 11.5 67 330-396 177-247 (435)
30 cd03567 VHS_GGA VHS domain fam 25.9 5.4E+02 0.012 23.9 9.3 81 334-414 23-110 (139)
31 TIGR00777 ahpD alkylhydroperox 24.7 87 0.0019 30.6 3.7 15 266-280 76-90 (177)
32 PF12717 Cnd1: non-SMC mitotic 24.6 5.8E+02 0.012 24.0 9.3 85 384-474 18-103 (178)
33 cd08324 CARD_NOD1_CARD4 Caspas 23.9 55 0.0012 28.4 1.9 38 228-265 47-84 (85)
34 cd03572 ENTH_epsin_related ENT 23.6 5.5E+02 0.012 23.5 8.5 88 370-464 22-119 (122)
35 PF14911 MMS22L_C: S-phase gen 23.3 9.9E+02 0.021 26.0 13.4 131 359-500 224-370 (373)
36 PF10508 Proteasom_PSMB: Prote 22.3 9.4E+02 0.02 26.7 11.7 80 390-475 118-200 (503)
37 PF04499 SAPS: SIT4 phosphatas 22.1 3.9E+02 0.0084 29.9 8.6 44 201-244 34-79 (475)
38 KOG2047 mRNA splicing factor [ 21.1 1.1E+03 0.024 27.9 11.9 145 306-459 85-255 (835)
No 1
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-164 Score=1257.94 Aligned_cols=418 Identities=68% Similarity=1.141 Sum_probs=413.1
Q ss_pred ccccccCCCCCCCChhHhHHHHHHHHhcccccccccCCCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhHh
Q 010504 85 VAPYEALPGFRDVASFEKQNLLIRKLNLCCVLFDFTDPTKNLKEKDVKRQTLLELVDFITSANGKFTETVMQEVIKMVSV 164 (508)
Q Consensus 85 ~~~~~~LP~~~dv~~~e~~~Lf~~Kl~~C~~ifDFsdp~~d~~~Ke~Kr~tL~EL~~~v~~~~~~l~e~~~~~i~~Mvs~ 164 (508)
..++++||+|+|||++|+++||++|+++||++|||+||.+|.++||+||+||+||+||+.+.++++++.+|+++++|+++
T Consensus 39 ~~~l~~LP~~~dv~~se~~~Lf~~Kl~~Cc~~FDF~Dp~~~~~~keikR~tL~eLvd~v~~~~~kite~~~~~vv~m~s~ 118 (457)
T KOG2085|consen 39 NVELEPLPSLKDVPSSEQKELFIKKLEQCCVLFDFNDPLKDLKGKEIKRQTLLELVDDVISRRGKISEEVYSEVVKMFSV 118 (457)
T ss_pred CCCceeCCccCcCChhHhHHHHHHHHHhhheeeeccChhhhhccchhHHHHHHHHHHHHhhccccccHHHHHHHHHHHHH
Confidence 44599999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCCCCCCccccCCCCCCCCCCCCCCCchhhHHHHHHHHHhcCCcCChHHhhccCCHHHHHHHhhcCCCCChhHH
Q 010504 165 NLFRSLSPQPRENKTLESFDLEEEEPLMDPAWPHLQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLLDLFDSEDPRER 244 (508)
Q Consensus 165 NiFR~lPp~~~~~~~~~~~d~eedep~~epaWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fv~~Ll~lfdSeDpRER 244 (508)
||||+|||..++++ +|+|||||++||+|||||+||++|+||++||++|+++||+||||+||++||+||||||||||
T Consensus 119 nifR~lpp~~n~~~----~d~eedEp~le~awphLqlvye~~Lrf~~sp~~d~~vaK~yid~~FvlkLLdLFdSEDpRER 194 (457)
T KOG2085|consen 119 NIFRTLPPSVNPTG----FDYEEDEPVLEPAWPHLQLVYEFLLRFLESPDFDPSVAKKYIDQKFVLKLLDLFDSEDPRER 194 (457)
T ss_pred HhhccCCcccCCCc----CCccccCcccCCCchHHHHHHHHHHHHHhCcccCHHHHHHHhhHHHHHHHHHHhcCCChHHH
Confidence 99999999998753 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccccCChHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCcHHHHHHHHHHHhhcCCCCCC
Q 010504 245 EYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIPLHKPKC 324 (508)
Q Consensus 245 d~LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFa~PLKeEHk~Fl~rvLiPLHk~~~ 324 (508)
|+|||+|||||||||+||+|||++|||+||+|||||++|||||||||||||||||||+|||||||+||.||||||||+++
T Consensus 195 e~LKT~LhrIygKfl~~r~firk~iNNif~~FIyEte~hnGIaELLEIlgSiIngfAlPlKEEhkiFL~rvLipLhk~k~ 274 (457)
T KOG2085|consen 195 EFLKTILHRIYGKFLVHRPFIRKSINNIFLRFIYETERHNGIAELLEILGSIINGFALPLKEEHKLFLVRVLIPLHKPKS 274 (457)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHhhcchhhhhcccccccCCHHHHHHHHHHhcCcccCcchhHHHHHHHHhhhccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhHHHHHHHHHHhCcccHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCChhHHHhhHHHHHHHHHHHhCCCc
Q 010504 325 LAMYHQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSH 404 (508)
Q Consensus 325 ~~~yh~qL~yci~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~~eF~~i~~pLF~~la~Ci~S~h 404 (508)
++.||+||+|||+||+||||+|+++||+|||||||+|||+||||||||||||||+++|.+|++||+|||+|||+|++|+|
T Consensus 275 l~~yh~QLaYcivQfveKd~kl~~~VIrglLK~WP~tnS~KEVmFL~ElEEILe~iep~eFqk~~~PLf~qia~c~sS~H 354 (457)
T KOG2085|consen 275 LSLYHKQLAYCIVQFVEKDPKLTETVIRGLLKYWPKTNSSKEVMFLNELEEILEVIEPSEFQKIMVPLFRQIARCVSSPH 354 (457)
T ss_pred ccccccccceeeeeeeccCccccHHHHHHHHHhcCCCCCcceeeeHhhHHHHHHhcCHHHHHHHhHHHHHHHHHHcCChh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcchhHHHHHhhccccccccccHHHHhhhcccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 010504 405 FQVAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQKFKESEAKV 484 (508)
Q Consensus 405 fqVAErAL~lWnNe~i~~li~~n~~~IlPii~paL~~~s~~HWn~~V~~la~~vlk~l~e~D~~lf~~~~~~~~~~~~~~ 484 (508)
||||||||++|||+||++||++|+++|+|||||+||++++.|||++|+++++||+|+|||||++||++|+++|++++.++
T Consensus 355 FQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~emd~~LFeec~~~y~~~~~k~ 434 (457)
T KOG2085|consen 355 FQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEMDPKLFEECLALYKEDRWKE 434 (457)
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcC
Q 010504 485 EEIRTQCDASWKRLEEIAAANS 506 (508)
Q Consensus 485 ~~~~~~r~~~W~~l~~~A~~~~ 506 (508)
++.+++|+++|++||++|+.++
T Consensus 435 ~~~~~~re~~W~~le~~~~~~~ 456 (457)
T KOG2085|consen 435 KETEEKREETWKRLEELAAENP 456 (457)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999999999998865
No 2
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=100.00 E-value=1.8e-131 Score=1040.58 Aligned_cols=407 Identities=62% Similarity=1.073 Sum_probs=360.7
Q ss_pred cCCCCCCCChhHhHHHHHHHHhcccccccccCCCCCchhhHHHHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHhHhhcc
Q 010504 90 ALPGFRDVASFEKQNLLIRKLNLCCVLFDFTDPTKNLKEKDVKRQTLLELVDFITSAN--GKFTETVMQEVIKMVSVNLF 167 (508)
Q Consensus 90 ~LP~~~dv~~~e~~~Lf~~Kl~~C~~ifDFsdp~~d~~~Ke~Kr~tL~EL~~~v~~~~--~~l~e~~~~~i~~Mvs~NiF 167 (508)
+||+|+||+++++++||++||++||++|||+||.+|.++||+||+||+||++|+++++ +.++|++++++++||++|||
T Consensus 1 ~lP~l~dv~~~e~~~lf~~Kl~~C~~ifDF~d~~~d~~~Ke~K~~~L~el~~~v~~~~~~~~l~e~~~~~i~~Mi~~Nif 80 (409)
T PF01603_consen 1 PLPSLPDVPPPERQELFLKKLQQCCVIFDFSDPSSDLKEKEIKRQTLNELVDYVSNSRIQGILTEPVYPEIFNMISANIF 80 (409)
T ss_dssp ------SS-SSSCSCHTTHHHHHHHHHSTTSSSSSSHHHHHSHHHHHHHHHHHHCSSS--SSS-TTSHHHHHHHHHHHH-
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHhCCEeeCCCCccchHHHHHHHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHHhcc
Confidence 6999999999999999999999999999999999999999999999999999999988 89999999999999999999
Q ss_pred cCCCCCCCCCccccCCCCCCCCCCCCCCCchhhHHHHHHHHHhcCCcCChHHhhccCCHHHHHHHhhcCCCCChhHHHHH
Q 010504 168 RSLSPQPRENKTLESFDLEEEEPLMDPAWPHLQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLLDLFDSEDPREREYL 247 (508)
Q Consensus 168 R~lPp~~~~~~~~~~~d~eedep~~epaWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fv~~Ll~lfdSeDpRERd~L 247 (508)
|++||.+.. .+|+|||+++.||+|||||+||++|++|++++++++ +|+|||++|+.+|+++|+|+||||||+|
T Consensus 81 R~lP~~~~~-----~~~~~~d~~~~e~~WpHL~~vY~il~~~i~~~~~~~--~~~~i~~~fi~~Ll~l~~S~D~rER~~l 153 (409)
T PF01603_consen 81 RPLPPIPNP-----SFDPDDDEPFLEPSWPHLQLVYEILLRFIESPPFDP--AKKYIDQKFIKKLLELFDSPDPRERDYL 153 (409)
T ss_dssp S-----SS-------S-GGG------TTHHHHHHHHHHHHHHHTSTT--C--CTTTS-HHHHHHHHHTTTSSTHHHHHHH
T ss_pred CCCCCcccc-----cCCccccccccccccHhHHHHHHHHHHHHHCccccH--HHHHcCHHHHHHHHHHcCCCCHHHHHHH
Confidence 999999875 378999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHhccccCChHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCcHHHHHHHHHHHhhcCCCCCCccc
Q 010504 248 KTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIPLHKPKCLAM 327 (508)
Q Consensus 248 KtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFa~PLKeEHk~Fl~rvLiPLHk~~~~~~ 327 (508)
|++||||||||+++|+|||++|+++|++||||+++|+||+|||||+|||||||++|||+||+.||.++|+|||++++++.
T Consensus 154 k~~l~~iy~k~~~~r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~eh~~fl~~vllPLh~~~~~~~ 233 (409)
T PF01603_consen 154 KTILHRIYGKFPNLRSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEEHKQFLRKVLLPLHKSPHLSS 233 (409)
T ss_dssp HHHHHHHHHH-TTTHHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HHHHHHHHHTTGGGGGSTGGGG
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhCcccHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCChhHHHhhHHHHHHHHHHHhCCCcHHH
Q 010504 328 YHQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQV 407 (508)
Q Consensus 328 yh~qL~yci~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~~eF~~i~~pLF~~la~Ci~S~hfqV 407 (508)
||+||+||++||++|||+|+..+++||+||||+||++|||+||+||++||+.+++++|++++.|||++||+|++|+||||
T Consensus 234 y~~~L~~~~~~f~~kdp~l~~~~i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~~~lf~~la~ci~S~h~qV 313 (409)
T PF01603_consen 234 YHQQLSYCVVQFLEKDPSLAEPVIKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIMVPLFKRLAKCISSPHFQV 313 (409)
T ss_dssp THHHHHHHHHHHHHH-GGGHHHHHHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHTSSSHHH
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcchhHHHHHhhccccccccccHHHHhhhcccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH
Q 010504 408 AERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQKFKESEAKVEEI 487 (508)
Q Consensus 408 AErAL~lWnNe~i~~li~~n~~~IlPii~paL~~~s~~HWn~~V~~la~~vlk~l~e~D~~lf~~~~~~~~~~~~~~~~~ 487 (508)
|||||++|+|++|++++++|++.|+|+|+|+|++++++|||++||++|++|+++|+||||++|++|+++|++++++++++
T Consensus 314 AErAl~~w~n~~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf~~~~~~~~~~~~~~~~~ 393 (409)
T PF01603_consen 314 AERALYFWNNEYFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLFDKCAQKYKEKEQKEKAR 393 (409)
T ss_dssp HHHHHGGGGSHHHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 010504 488 RTQCDASWKRLEEIAA 503 (508)
Q Consensus 488 ~~~r~~~W~~l~~~A~ 503 (508)
+++|+++|++|+++|+
T Consensus 394 ~~~r~~~W~~i~~~A~ 409 (409)
T PF01603_consen 394 EKKRKKKWKKIEEAAK 409 (409)
T ss_dssp SHHHHHHHTT-S----
T ss_pred HHHHHHHHHHHHHhhC
Confidence 9999999999999985
No 3
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=100.00 E-value=1e-39 Score=306.78 Aligned_cols=134 Identities=57% Similarity=0.916 Sum_probs=130.6
Q ss_pred HhCcccHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHhhhcchhH
Q 010504 341 EKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHI 420 (508)
Q Consensus 341 eKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~~eF~~i~~pLF~~la~Ci~S~hfqVAErAL~lWnNe~i 420 (508)
...+.++...+++|++|||++|+.||.+||++| ||||||++||||+|
T Consensus 35 ~~~~~~~~~~~e~l~~~~~v~~s~k~~lfl~kl---------------------------------VAERAL~lWnNe~i 81 (170)
T PLN00122 35 AVNPASVVAGYEPLPSFRDVPNSEKQNLFVRKL---------------------------------VAERALFLWNNDHI 81 (170)
T ss_pred ccCCCccccccccccCCCCCCchHHHHHHHHHH---------------------------------HHHHHHHHHccHHH
Confidence 457889999999999999999999999999999 99999999999999
Q ss_pred HHHHhhccccccccccHHHHhhhcccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010504 421 ENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQKFKESEAKVEEIRTQCDASWKRLEE 500 (508)
Q Consensus 421 ~~li~~n~~~IlPii~paL~~~s~~HWn~~V~~la~~vlk~l~e~D~~lf~~~~~~~~~~~~~~~~~~~~r~~~W~~l~~ 500 (508)
++||.+|+++|||||||+|++|+++|||++||+++++|+||||||||+||++|+++|+++++++++.+++|+++|++|++
T Consensus 82 ~~LI~~N~~~IlPIifpaL~~ns~~HWN~~V~~lt~nvlK~f~emD~~LF~ec~~~~ke~~~~~~~~~~~r~~~W~~le~ 161 (170)
T PLN00122 82 VNLIAQNRQVILPIIFPALEKNTRGHWNQAVHGLTLNVRKMFSEMDPELFEECLRKFEEDEAKAKEVEEKREATWKRLEE 161 (170)
T ss_pred HHHHHHhhhhhHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC
Q 010504 501 IAAANST 507 (508)
Q Consensus 501 ~A~~~~~ 507 (508)
+|++++.
T Consensus 162 ~A~~~~~ 168 (170)
T PLN00122 162 AAAAKAI 168 (170)
T ss_pred HHHhccC
Confidence 9999873
No 4
>PLN00122 serine/threonine protein phosphatase 2A; Provisional
Probab=97.77 E-value=0.00018 Score=68.74 Aligned_cols=36 Identities=58% Similarity=0.841 Sum_probs=32.0
Q ss_pred CCCCCCCCCCccccccCCCCCCCChhHhHHHHHHHH
Q 010504 75 GNPRLNGNSVVAPYEALPGFRDVASFEKQNLLIRKL 110 (508)
Q Consensus 75 ~~~~~~~~~~~~~~~~LP~~~dv~~~e~~~Lf~~Kl 110 (508)
.....++.++...+++||+|+|||++||++||++||
T Consensus 32 ~~~~~~~~~~~~~~e~l~~~~~v~~s~k~~lfl~kl 67 (170)
T PLN00122 32 ASSAVNPASVVAGYEPLPSFRDVPNSEKQNLFVRKL 67 (170)
T ss_pred cccccCCCccccccccccCCCCCCchHHHHHHHHHH
Confidence 334567778899999999999999999999999999
No 5
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=87.82 E-value=11 Score=40.62 Aligned_cols=175 Identities=16% Similarity=0.188 Sum_probs=115.8
Q ss_pred HHHHhhcC-CCCChhHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCcHHH
Q 010504 229 VLKLLDLF-DSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEE 307 (508)
Q Consensus 229 v~~Ll~lf-dSeDpRERd~LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFa~PLKeE 307 (508)
+..|+..+ +..|+.-|..+-.-+..+-.++...-.|.-..+-+++- ... ..-..|....+..++... ..+++.
T Consensus 341 l~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~~~~v~~l~~ll~----~~~-~~~~~~~~~~i~~ll~~~-~~~~~~ 414 (526)
T PF01602_consen 341 LDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDAEWYVDTLLKLLE----ISG-DYVSNEIINVIRDLLSNN-PELREK 414 (526)
T ss_dssp HHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSHHHHHHHHHHHHH----CTG-GGCHCHHHHHHHHHHHHS-TTTHHH
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHHHHhccCchHHHHHHHHHHhhh----hcc-ccccchHHHHHHHHhhcC-hhhhHH
Confidence 44566666 56688777777777777777887776676666655543 111 122556666677776553 233333
Q ss_pred HHHHHHHHhhcCCCCCCccccchhHHHHHHHHHHhCcc--cHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCChhHH
Q 010504 308 HKLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKDCK--LADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEF 385 (508)
Q Consensus 308 Hk~Fl~rvLiPLHk~~~~~~yh~qL~yci~qFveKDp~--La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~~eF 385 (508)
-...+.+.+ ..-.....-.-..+|+-+|.+..+. .+..+++.+...|...+..=+...|..+..+....+..+.
T Consensus 415 ~l~~L~~~l----~~~~~~~~~~~~~wilGEy~~~~~~~~~~~~~~~~l~~~~~~~~~~vk~~ilt~~~Kl~~~~~~~~~ 490 (526)
T PF01602_consen 415 ILKKLIELL----EDISSPEALAAAIWILGEYGELIENTESAPDILRSLIENFIEESPEVKLQILTALAKLFKRNPENEV 490 (526)
T ss_dssp HHHHHHHHH----TSSSSHHHHHHHHHHHHHHCHHHTTTTHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHSCSTTH
T ss_pred HHHHHHHHH----HHhhHHHHHHHHHhhhcccCCcccccccHHHHHHHHHHhhccccHHHHHHHHHHHHHHHhhCCchhh
Confidence 333333322 2223333566788999999888877 8999999999999888777777788888888877665554
Q ss_pred HhhHHHHHHHHHHHhC--CCcHHHHHHHHhhhc
Q 010504 386 QKCMVPLFRQIASCLS--SSHFQVAERALYLWN 416 (508)
Q Consensus 386 ~~i~~pLF~~la~Ci~--S~hfqVAErAL~lWn 416 (508)
.+ .+...+.++.. |.++.|-+||.++|.
T Consensus 491 ~~---~i~~~~~~~~~~~s~~~evr~Ra~~y~~ 520 (526)
T PF01602_consen 491 QN---EILQFLLSLATEDSSDPEVRDRAREYLR 520 (526)
T ss_dssp HH---HHHHHHHCHHHHS-SSHHHHHHHHHHHH
T ss_pred HH---HHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 43 46666666667 999999999999984
No 6
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=75.16 E-value=54 Score=33.52 Aligned_cols=77 Identities=29% Similarity=0.387 Sum_probs=49.4
Q ss_pred cchhHHHHHHHHH--HhCcc---cHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCChhHHH--------hhHHHHHH
Q 010504 328 YHQPLSYCITQFV--EKDCK---LADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQ--------KCMVPLFR 394 (508)
Q Consensus 328 yh~qL~yci~qFv--eKDp~---La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~~eF~--------~i~~pLF~ 394 (508)
....+.+.+++.+ ||||. ++..+++.+++.||. . -|..|+-+++..-=|-.|. --..-|=.
T Consensus 120 ~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~-~-----~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~ 193 (262)
T PF14500_consen 120 MGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI-S-----EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKR 193 (262)
T ss_pred chhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc-c-----hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHH
Confidence 3456677777776 79998 677888999999995 2 3445555565431122222 12356888
Q ss_pred HHHHHhCCCcHHHHHHH
Q 010504 395 QIASCLSSSHFQVAERA 411 (508)
Q Consensus 395 ~la~Ci~S~hfqVAErA 411 (508)
.|-.|+.|.+ ..|+-|
T Consensus 194 ~L~~cl~s~~-~fa~~~ 209 (262)
T PF14500_consen 194 ALRNCLSSTP-LFAPFA 209 (262)
T ss_pred HHHHHhcCcH-hhHHHH
Confidence 9999999755 345443
No 7
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.58 E-value=54 Score=38.74 Aligned_cols=155 Identities=18% Similarity=0.204 Sum_probs=109.8
Q ss_pred CcHHHHHHHHHHHhhcCCCCCCccccchhHHHHHHHHHHhCcccHHHHHHHhhccCCCCCChHHHHHH--HHHHHHHhhC
Q 010504 303 PLKEEHKLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFL--SELEEVLEAT 380 (508)
Q Consensus 303 PLKeEHk~Fl~rvLiPLHk~~~~~~yh~qL~yci~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL--~EleeiLe~~ 380 (508)
|.-+.|+. .++|+-|...+.-..| -+..||-++..|+|+|.++-++. |.=.+.-+-++--| +-|..++.
T Consensus 316 P~~~~~~i--~kaLvrLLrs~~~vqy--vvL~nIa~~s~~~~~lF~P~lKs---Ffv~ssDp~~vk~lKleiLs~La~-- 386 (968)
T KOG1060|consen 316 PKNQVTKI--AKALVRLLRSNREVQY--VVLQNIATISIKRPTLFEPHLKS---FFVRSSDPTQVKILKLEILSNLAN-- 386 (968)
T ss_pred CHHHHHHH--HHHHHHHHhcCCcchh--hhHHHHHHHHhcchhhhhhhhhc---eEeecCCHHHHHHHHHHHHHHHhh--
Confidence 44455655 7888888887777666 46688999999999999998764 44455555444443 33333322
Q ss_pred ChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHhhccccccccccHHHHhhhcccchHHHHHHHHHHHH
Q 010504 381 QPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVRK 460 (508)
Q Consensus 381 ~~~eF~~i~~pLF~~la~Ci~S~hfqVAErAL~lWnNe~i~~li~~n~~~IlPii~paL~~~s~~HWn~~V~~la~~vlk 460 (508)
... ..-+|+-+-.-|.|+|++||-.|..- ++....+...+-+-.+..|..-.++| +..|..-+..|+|
T Consensus 387 -esn----i~~ILrE~q~YI~s~d~~faa~aV~A------iGrCA~~~~sv~~tCL~gLv~Llssh-de~Vv~eaV~vIk 454 (968)
T KOG1060|consen 387 -ESN----ISEILRELQTYIKSSDRSFAAAAVKA------IGRCASRIGSVTDTCLNGLVQLLSSH-DELVVAEAVVVIK 454 (968)
T ss_pred -hcc----HHHHHHHHHHHHhcCchhHHHHHHHH------HHHHHHhhCchhhHHHHHHHHHHhcc-cchhHHHHHHHHH
Confidence 222 23477888888899999988877542 34445555556666777888888888 9999999999999
Q ss_pred HHHhhCHHHHHHHHHHHH
Q 010504 461 IFSEIDPELFDECLQKFK 478 (508)
Q Consensus 461 ~l~e~D~~lf~~~~~~~~ 478 (508)
+|..+||.--.+...+..
T Consensus 455 ~Llq~~p~~h~~ii~~La 472 (968)
T KOG1060|consen 455 RLLQKDPAEHLEILFQLA 472 (968)
T ss_pred HHHhhChHHHHHHHHHHH
Confidence 999999988877766543
No 8
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=71.13 E-value=43 Score=32.18 Aligned_cols=104 Identities=19% Similarity=0.297 Sum_probs=64.7
Q ss_pred CCChHHHHHHHHHHHHHhhC----ChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHhhcccccccccc
Q 010504 361 TNSSKEVMFLSELEEVLEAT----QPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVILPIIF 436 (508)
Q Consensus 361 tns~KEv~FL~EleeiLe~~----~~~eF~~i~~pLF~~la~Ci~S~hfqVAErAL~lWnNe~i~~li~~n~~~IlPii~ 436 (508)
.+=.+.+-=|..|..++..- .+..|...+..+...|+.|+++...+|+-.|+.++. .+.......-...++.++
T Consensus 19 ~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~--~l~~~l~~~~~~~~~~~l 96 (228)
T PF12348_consen 19 SDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLS--DLARQLGSHFEPYADILL 96 (228)
T ss_dssp SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHH--HHHHHHGGGGHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHH--HHHHHHhHhHHHHHHHHH
Confidence 34455566677888887755 234444444555569999999999999999998774 344444555555577788
Q ss_pred HHHHhhhcccchHHHHHHHHHHHHHHHhhCH
Q 010504 437 PALEKNGCNHWNQVVQNLTVNVRKIFSEIDP 467 (508)
Q Consensus 437 paL~~~s~~HWn~~V~~la~~vlk~l~e~D~ 467 (508)
|.|.+..... ++.|+..|.+++..+.+.-+
T Consensus 97 ~~Ll~~~~~~-~~~i~~~a~~~L~~i~~~~~ 126 (228)
T PF12348_consen 97 PPLLKKLGDS-KKFIREAANNALDAIIESCS 126 (228)
T ss_dssp HHHHHGGG----HHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHccc-cHHHHHHHHHHHHHHHHHCC
Confidence 8887665333 88999999999998888766
No 9
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=64.39 E-value=96 Score=35.34 Aligned_cols=88 Identities=15% Similarity=0.270 Sum_probs=53.8
Q ss_pred cchhHHHHHHH---HHHhCcc---cHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCChhHHHhhHHHHHHHHHHHhC
Q 010504 328 YHQPLSYCITQ---FVEKDCK---LADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLS 401 (508)
Q Consensus 328 yh~qL~yci~q---FveKDp~---La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~~eF~~i~~pLF~~la~Ci~ 401 (508)
.-.+|.+|+.+ |..+... +...+.+.++-.|=......++-+|.-+.|+.+.+...+-..++.++|..|-.++=
T Consensus 241 ~Idrli~C~~~Alp~fs~~v~Sskfv~y~~~kvlP~l~~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP 320 (556)
T PF05918_consen 241 SIDRLISCLRQALPFFSRGVSSSKFVNYMCEKVLPKLSDLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMP 320 (556)
T ss_dssp HHHHHHHHHHHHGGG-BTTB--HHHHHHHHHHTCCCTT-----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHhhHHhcCCCChHHHHHHHHHHhcCChhhCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCC
Confidence 34567788887 5555444 44555566665565666688899999999999998877788888999999865543
Q ss_pred ------CCcHHHHHHHHhhh
Q 010504 402 ------SSHFQVAERALYLW 415 (508)
Q Consensus 402 ------S~hfqVAErAL~lW 415 (508)
+.+|-..|..||.+
T Consensus 321 ~~~~~~~l~fs~vEcLL~af 340 (556)
T PF05918_consen 321 SKKTEPKLQFSYVECLLYAF 340 (556)
T ss_dssp ---------HHHHHHHHHHH
T ss_pred CCCCCCcccchHhhHHHHHH
Confidence 35667778777655
No 10
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=59.92 E-value=1.7e+02 Score=33.95 Aligned_cols=150 Identities=23% Similarity=0.293 Sum_probs=79.3
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCcHHHH
Q 010504 229 VLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEH 308 (508)
Q Consensus 229 v~~Ll~lfdSeDpRERd~LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFa~PLKeEH 308 (508)
|.+|+.+++|.|..+.+.+|..+++..+. ..-+|+-..+ ..|..+| |-.-.++||. |+--|- +
T Consensus 6 ~~~l~~~l~s~~~~~~~~~~~~~~~~~~~--~~~~~l~~~l----~~y~~~t----~s~~~~~il~----~~~~P~---~ 68 (668)
T PF04388_consen 6 ITELLSLLESNDLSVLEEIKALLQELLNS--DREPWLVNGL----VDYYLST----NSQRALEILV----GVQEPH---D 68 (668)
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHHhhc--cchHHHHHHH----HHHHhhc----CcHHHHHHHH----hcCCcc---H
Confidence 67899999999999999999999998874 3334654333 3333343 4445677774 444442 2
Q ss_pred HHHHHHHhhcCCCCCCccccchhHHHHHHHHHHhCcccHHH-----HHHHhhccCCCCCChHHH-HHHHHHHHHHhhCCh
Q 010504 309 KLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKDCKLADT-----VIKGLLKYWPITNSSKEV-MFLSELEEVLEATQP 382 (508)
Q Consensus 309 k~Fl~rvLiPLHk~~~~~~yh~qL~yci~qFveKDp~La~~-----vi~gLLk~WP~tns~KEv-~FL~EleeiLe~~~~ 382 (508)
|.||-++==-+.++ .|--+....+..||.++|.-.-. ++.-|||-==...+.=-| .=|.-|--+|+.+ |
T Consensus 69 K~~~~~l~~~~~~~----~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~i-p 143 (668)
T PF04388_consen 69 KHLFDKLNDYFVKP----SYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHI-P 143 (668)
T ss_pred HHHHHHHHHHHcCc----hhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccc-c
Confidence 33333211112222 23344445555666666542222 222222222222222111 1133334445555 3
Q ss_pred hHHHhhHHHHHHHHHHHh
Q 010504 383 PEFQKCMVPLFRQIASCL 400 (508)
Q Consensus 383 ~eF~~i~~pLF~~la~Ci 400 (508)
........-||..+++.+
T Consensus 144 ~~l~~~L~~Lf~If~Rl~ 161 (668)
T PF04388_consen 144 SSLGPHLPDLFNIFGRLL 161 (668)
T ss_pred chhhHHHHHHHHHHHHHH
Confidence 444566667777777776
No 11
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=59.34 E-value=46 Score=29.68 Aligned_cols=91 Identities=14% Similarity=0.223 Sum_probs=61.4
Q ss_pred HHHHHhhC-ChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHhhhc------chhHHHHHhhccccccccccHHHHhhhcc
Q 010504 373 LEEVLEAT-QPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWN------NDHIENLIRQNRKVILPIIFPALEKNGCN 445 (508)
Q Consensus 373 leeiLe~~-~~~eF~~i~~pLF~~la~Ci~S~hfqVAErAL~lWn------Ne~i~~li~~n~~~IlPii~paL~~~s~~ 445 (508)
+.+|...+ +..++..|+.-|.+||.. ....+..+.-.||.+.. +++|+.-+..+...|-.+--=......-.
T Consensus 24 l~eIa~~t~~~~~~~~I~~~l~kRL~~-~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~~~I~~l~~f~~~d~~g~ 102 (125)
T PF01417_consen 24 LAEIAQLTYNSKDCQEIMDVLWKRLSK-SDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHIDIIRELQDFQYVDPKGK 102 (125)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHS-STSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTHHHHHGGGG---BBTTST
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHh-cCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHhhcceeeccCCCCc
Confidence 45666666 568888888888888844 35577788888887753 57777777777666655421111111234
Q ss_pred cchHHHHHHHHHHHHHHHh
Q 010504 446 HWNQVVQNLTVNVRKIFSE 464 (508)
Q Consensus 446 HWn~~V~~la~~vlk~l~e 464 (508)
.|...||..|..++.+|.|
T Consensus 103 d~~~~VR~~A~~i~~lL~d 121 (125)
T PF01417_consen 103 DQGQNVREKAKEILELLND 121 (125)
T ss_dssp BHHHHHHHHHHHHHHHHTS
T ss_pred cHHHHHHHHHHHHHHHhCC
Confidence 7889999999999999875
No 12
>KOG2175 consensus Protein predicted to be involved in carbohydrate metabolism [Carbohydrate transport and metabolism]
Probab=51.47 E-value=1.9e+02 Score=32.23 Aligned_cols=152 Identities=22% Similarity=0.313 Sum_probs=89.7
Q ss_pred cCCCcHHHHHHHHHH-----HhhcCCCCCCccccchhHHHHHHHHHHhCcccHH-HHHHHhhccCCCCCChHHHHHHHHH
Q 010504 300 FALPLKEEHKLFLIR-----ALIPLHKPKCLAMYHQPLSYCITQFVEKDCKLAD-TVIKGLLKYWPITNSSKEVMFLSEL 373 (508)
Q Consensus 300 Fa~PLKeEHk~Fl~r-----vLiPLHk~~~~~~yh~qL~yci~qFveKDp~La~-~vi~gLLk~WP~tns~KEv~FL~El 373 (508)
++.|=-..|+.|+.. ..+|.-.|.-+..-|| |...=+-||-.|++ .+++. +..|.--.++|.++.
T Consensus 80 p~~~~~k~HR~~l~~~~~f~e~ipi~dp~ll~kIhq----t~r~q~l~d~vl~~~~~~~~-----a~~~~l~s~i~~~~~ 150 (458)
T KOG2175|consen 80 PAVPQSKKHREFLSLLAKFKEVIPISDPELLAKIHQ----TFRVQYLKDVVLPEPGVFDE-----ATGNTLNSFIFFNKV 150 (458)
T ss_pred ccCCChhhhHHHHHhhccceeeeecCCHHHHHHHHH----HHHHHHhheeeecCCcchhc-----chhHHHHHHHHHhhh
Confidence 555644449999853 3344444443333333 22222234444442 11110 123444556777776
Q ss_pred HHHHhhCChhHHHhhHHHHHHHHHHHhCCCcHH---------------HHHHHHhhhcchhHHH-HHhhccccccccccH
Q 010504 374 EEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQ---------------VAERALYLWNNDHIEN-LIRQNRKVILPIIFP 437 (508)
Q Consensus 374 eeiLe~~~~~eF~~i~~pLF~~la~Ci~S~hfq---------------VAErAL~lWnNe~i~~-li~~n~~~IlPii~p 437 (508)
+ |++.++.+++- +.+||.++. ++.-- +.-++|..|....|.. ++... |++
T Consensus 151 ~-ii~~lqed~~~--l~eLf~~l~----~~~t~~qkr~~li~~lke~c~~s~~L~~~~~~~~fkTlv~~~-------i~~ 216 (458)
T KOG2175|consen 151 N-IVSLLQEDEKF--LIELFARLR----SESTDDQKRDDLVHFLKEFCSFSKALQPQSRDAFFKTLVNKG-------ILD 216 (458)
T ss_pred h-hhhhhhcCchH--HHHHHHHhc----CCchHHHHHHHHHHHHHHHHHHHHhcCcchhhHHHHHHHHhh-------hHH
Confidence 6 55667666654 667777764 22222 2345677777777433 33333 677
Q ss_pred HHHhhhcccchHHHHHHHHHHHHHHHhhCHHHHHHHHH
Q 010504 438 ALEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQ 475 (508)
Q Consensus 438 aL~~~s~~HWn~~V~~la~~vlk~l~e~D~~lf~~~~~ 475 (508)
++......- +..+|..+..++..+.|++|.+..+-+.
T Consensus 217 ~le~~~~~~-d~~~r~~~~di~~~~ve~~~~~i~~~~~ 253 (458)
T KOG2175|consen 217 ALEYVLKMP-DTQVRSAATDILARLVEMSPSMIRSFTL 253 (458)
T ss_pred HHHHHhcCC-cchhhHHHHHHHHHHHhcCHHHHHHHHH
Confidence 777777677 8999999999999999999999987654
No 13
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=39.13 E-value=5.1e+02 Score=31.97 Aligned_cols=72 Identities=22% Similarity=0.361 Sum_probs=50.8
Q ss_pred hhHHHHHHHHHHHhCCCcHHHHHHHHhhhc--chhHHHHHhhccccccccccHHHHhhhcccchHHHHHHHHHHHHHHH
Q 010504 387 KCMVPLFRQIASCLSSSHFQVAERALYLWN--NDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVRKIFS 463 (508)
Q Consensus 387 ~i~~pLF~~la~Ci~S~hfqVAErAL~lWn--Ne~i~~li~~n~~~IlPii~paL~~~s~~HWn~~V~~la~~vlk~l~ 463 (508)
.+.+|+|..+-.-+.|+.-+-=.+||.-.. -|..-..|..+-..|+|++.+.|... ++.||..|+|++-.+.
T Consensus 344 ~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~Dp-----hprVr~AA~naigQ~s 417 (1075)
T KOG2171|consen 344 QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDP-----HPRVRYAALNAIGQMS 417 (1075)
T ss_pred hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCC-----CHHHHHHHHHHHHhhh
Confidence 456778888888888877665555554432 24444566667788888888887754 6999999999987654
No 14
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=36.97 E-value=2.5e+02 Score=24.49 Aligned_cols=104 Identities=20% Similarity=0.366 Sum_probs=57.1
Q ss_pred ccHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCChhHHHhhHHHHHHHHHHHhCC-CcHH-HHHHHHhhhcchhHHH
Q 010504 345 KLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSS-SHFQ-VAERALYLWNNDHIEN 422 (508)
Q Consensus 345 ~La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~~eF~~i~~pLF~~la~Ci~S-~hfq-VAErAL~lWnNe~i~~ 422 (508)
+|+..+.....+.||-..+. |+.++-..+.. ++..... ..-+++.+..=+.+ .+-. -.+| ...+..
T Consensus 7 kl~~~l~~i~~~~~P~~Wp~----~l~~l~~~~~~-~~~~~~~-~L~iL~~l~eEi~~~~~~~~~~~r------~~~l~~ 74 (148)
T PF08389_consen 7 KLAQVLAEIAKRDWPQQWPD----FLEDLLQLLQS-SPQHLEL-VLRILRILPEEITDFRRSSLSQER------RRELKD 74 (148)
T ss_dssp HHHHHHHHHHHHHTTTTSTT----HHHHHHHHHHT-THHHHHH-HHHHHHHHHHHHHTSHCCHSHHHH------HHHHHH
T ss_pred HHHHHHHHHHHHHChhhCch----HHHHHHHHhcc-chhHHHH-HHHHHHHHHHHHHhhhchhhhHHH------HHHHHH
Confidence 35667777788888888775 66666666554 3444332 23344444443332 1111 1122 456677
Q ss_pred HHhhccccccccccHHHHhhhcccchHHHHHHHHHHHHH
Q 010504 423 LIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVRKI 461 (508)
Q Consensus 423 li~~n~~~IlPii~paL~~~s~~HWn~~V~~la~~vlk~ 461 (508)
.+.++...|+.++...|......+ +..+...+..+++-
T Consensus 75 ~l~~~~~~i~~~l~~~l~~~~~~~-~~~~~~~~L~~l~s 112 (148)
T PF08389_consen 75 ALRSNSPDILEILSQILSQSSSEA-NEELVKAALKCLKS 112 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHCC-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcccc-HHHHHHHHHHHHHH
Confidence 777776666666666666555555 24445555555443
No 15
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=34.58 E-value=3.3e+02 Score=25.27 Aligned_cols=105 Identities=18% Similarity=0.313 Sum_probs=0.0
Q ss_pred HHHHHHHHhh-----CChh---HHHhhH-HHHHHHHHHHhCCCcHHHHHHHHhhhcc--hhHHHHHhhccccccccccHH
Q 010504 370 LSELEEVLEA-----TQPP---EFQKCM-VPLFRQIASCLSSSHFQVAERALYLWNN--DHIENLIRQNRKVILPIIFPA 438 (508)
Q Consensus 370 L~EleeiLe~-----~~~~---eF~~i~-~pLF~~la~Ci~S~hfqVAErAL~lWnN--e~i~~li~~n~~~IlPii~pa 438 (508)
|.-|+.+|+. .+.+ .|..++ ..++..|.+.+.+++++|.++++.+.-+ .++...++.-.+++++.++-.
T Consensus 43 LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~ 122 (168)
T PF12783_consen 43 LELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILR 122 (168)
T ss_pred HHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhcccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHH
Q 010504 439 LEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQKF 477 (508)
Q Consensus 439 L~~~s~~HWn~~V~~la~~vlk~l~e~D~~lf~~~~~~~ 477 (508)
+.....+ .-.-|.++..+++-+-. ||.+.-+.-..|
T Consensus 123 il~~~~~--~~~~k~~~Le~l~~l~~-~p~~l~~lf~NY 158 (168)
T PF12783_consen 123 ILESDNS--SLWQKELALEILRELCK-DPQFLVDLFVNY 158 (168)
T ss_pred HHccCCC--cHHHHHHHHHHHHHHHh-ChhHHHHHHHHc
No 16
>cd03571 ENTH_epsin ENTH domain, Epsin family; The epsin (Eps15 interactor) N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the trans-Golgi network, which suggests that E/ANTH domains are univ
Probab=34.55 E-value=1.3e+02 Score=27.33 Aligned_cols=89 Identities=18% Similarity=0.306 Sum_probs=56.9
Q ss_pred HHHHHhhC-ChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHhhhc------chhHHHHHhhccccccccc-cHHHHhhhc
Q 010504 373 LEEVLEAT-QPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWN------NDHIENLIRQNRKVILPII-FPALEKNGC 444 (508)
Q Consensus 373 leeiLe~~-~~~eF~~i~~pLF~~la~Ci~S~hfqVAErAL~lWn------Ne~i~~li~~n~~~IlPii-~paL~~~s~ 444 (508)
+.+|...+ +..+|..||.-|.+||... ..+-...-.||.+.. .+.++.-+.+|...|=.+- |.-.. ...
T Consensus 22 m~eIa~~t~~~~~~~~Im~~l~kRL~~~--~k~WR~vyKaL~lleyLl~nGse~vv~~~r~~~~~i~~L~~F~~~d-~~g 98 (123)
T cd03571 22 MAEIARATYNYVEFQEIMSMLWKRLNDK--GKNWRHVYKALTLLEYLLKNGSERVVDDARENLYIIRTLKDFQYID-ENG 98 (123)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHhhccceeeC-CCC
Confidence 45566655 6789999999999999865 456667777776653 3444444444443222210 00011 112
Q ss_pred ccchHHHHHHHHHHHHHHHh
Q 010504 445 NHWNQVVQNLTVNVRKIFSE 464 (508)
Q Consensus 445 ~HWn~~V~~la~~vlk~l~e 464 (508)
..|-..||..|.+++.++.|
T Consensus 99 ~d~G~~VR~ka~~i~~Ll~D 118 (123)
T cd03571 99 KDQGINVREKAKEILELLED 118 (123)
T ss_pred CchhHHHHHHHHHHHHHhCC
Confidence 36999999999999999876
No 17
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=34.21 E-value=1.8e+02 Score=25.24 Aligned_cols=72 Identities=18% Similarity=0.227 Sum_probs=47.0
Q ss_pred HhhHHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHhhccccc---cccccHHHHhhhcccchHHHHHHHHHHHHHH
Q 010504 386 QKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVI---LPIIFPALEKNGCNHWNQVVQNLTVNVRKIF 462 (508)
Q Consensus 386 ~~i~~pLF~~la~Ci~S~hfqVAErAL~lWnNe~i~~li~~n~~~I---lPii~paL~~~s~~HWn~~V~~la~~vlk~l 462 (508)
.+....|.+-+-.|++.++..|-..|.. .+.++.+..+..+ |+-||++|.+... -=++.||+-|.-+-++|
T Consensus 22 ~~~l~~Il~pVL~~~~D~d~rVRy~AcE-----aL~ni~k~~~~~~l~~f~~IF~~L~kl~~-D~d~~Vr~~a~~Ld~ll 95 (97)
T PF12755_consen 22 SKYLDEILPPVLKCFDDQDSRVRYYACE-----ALYNISKVARGEILPYFNEIFDALCKLSA-DPDENVRSAAELLDRLL 95 (97)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCchhHHHHHHHHHHHh
Confidence 3334444444558999999999888774 4455555555555 4557888887653 33777888887766665
Q ss_pred H
Q 010504 463 S 463 (508)
Q Consensus 463 ~ 463 (508)
.
T Consensus 96 k 96 (97)
T PF12755_consen 96 K 96 (97)
T ss_pred c
Confidence 4
No 18
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=33.98 E-value=2.1e+02 Score=35.07 Aligned_cols=102 Identities=22% Similarity=0.272 Sum_probs=59.8
Q ss_pred HHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHhhcccccccc--------ccHHHHhhhcccchHHHHHHHHHHHHHHHh
Q 010504 393 FRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVILPI--------IFPALEKNGCNHWNQVVQNLTVNVRKIFSE 464 (508)
Q Consensus 393 F~~la~Ci~S~hfqVAErAL~lWnNe~i~~li~~n~~~IlPi--------i~paL~~~s~~HWn~~V~~la~~vlk~l~e 464 (508)
+++.++-+.+.--.+...++.+ ++++=.+.|.+| |+|. ++|++..|...|.. ..+|..|-+-|.+
T Consensus 804 ~q~kik~~~ki~~k~Vnkqle~-~~~ys~e~i~~n---il~ll~dLkEK~~lpaicfn~dr~fc---ekla~kv~~~Le~ 876 (1330)
T KOG0949|consen 804 TQKQIKYVYKLQTKEVNKQLES-VVDYSSEYILEN---ILDLLMDLKEKNMLPAICFNTDRDFC---EKLALKVHRQLES 876 (1330)
T ss_pred HHHHHHHHHHhhhhhhhhHhhh-cccCcHHHHHHH---HHHHHHHHHhccccchhcccchHHHH---HHHHHHHHHHHHH
Confidence 3444444444444556667777 888888888777 4432 34555555544444 4566666666666
Q ss_pred hCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010504 465 IDPE-LFDECLQKFKESEAKVEEIRTQCDASWKRLEEIA 502 (508)
Q Consensus 465 ~D~~-lf~~~~~~~~~~~~~~~~~~~~r~~~W~~l~~~A 502 (508)
++.+ --++|..+++ .+++...+.+|.++.|.+=..+|
T Consensus 877 ~e~Ee~k~k~m~k~k-k~~~~a~~r~Kt~e~~~k~~~~~ 914 (1330)
T KOG0949|consen 877 MEMEEKKDKLMEKMK-KEAKRARDREKTKESWIKESIAA 914 (1330)
T ss_pred HHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhh
Confidence 6654 4445555544 34445555666688887755444
No 19
>KOG2188 consensus Predicted RNA-binding protein, contains Pumilio domains [Translation, ribosomal structure and biogenesis]
Probab=31.57 E-value=5.1e+02 Score=30.14 Aligned_cols=230 Identities=22% Similarity=0.224 Sum_probs=115.6
Q ss_pred HhhcCCCCCh---hHHHHHHHHHH-----HHhccccC-ChHHHHHHHHHHHHHhhhcccCCcC----hHHH------HHH
Q 010504 232 LLDLFDSEDP---REREYLKTILH-----RIYGKFMV-HRPFIRKAINNIFFRFIFETEKHNG----IAEL------LEV 292 (508)
Q Consensus 232 Ll~lfdSeDp---RERd~LKtiLH-----riYgKf~~-~R~fIRk~Innif~~fiyEte~~nG----IaEL------LeI 292 (508)
.+.+++-.|+ .|+-.+|.+|. |+..+.|. .++-.+.-.+-+|..=|++-..|.+ +.-| +|-
T Consensus 320 ~~~~~~e~d~~~~kE~~~~k~~l~d~tgSrllE~Imeva~~~~~~lf~~~f~~rl~~La~~p~aNF~lQrli~h~~~~e~ 399 (650)
T KOG2188|consen 320 KFQLFNEKDGLWGKERSFLKELLSDQTGSRLLEVIMEVASESLLSLFYIVFCGRLDELAVHPIANFPLQRLINHLTSLED 399 (650)
T ss_pred hhhhccccCcccccccHHHHHHHhcCcccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhCccccchHHHHHHhccCHHH
Confidence 3446777788 99999999887 44444433 3333333333344433444333322 1111 456
Q ss_pred HHHHHhccCCCcHH--HH-HHHHHHHhhcCCCCCCccccchhHHHHHHHHH----HhCcccHHHHHHHhh-----ccCCC
Q 010504 293 LGSIINGFALPLKE--EH-KLFLIRALIPLHKPKCLAMYHQPLSYCITQFV----EKDCKLADTVIKGLL-----KYWPI 360 (508)
Q Consensus 293 lgSIInGFa~PLKe--EH-k~Fl~rvLiPLHk~~~~~~yh~qL~yci~qFv----eKDp~La~~vi~gLL-----k~WP~ 360 (508)
+|+||.-.+.-++. +| ..+-..+| +-..+.++.|..++..-+.|.+ +++-......+..+. .=|+-
T Consensus 400 v~~v~eeL~P~~~~LL~~g~~gVv~sL--ia~~~rl~s~q~~~l~~Li~a~~~~~~~~k~il~~lL~~~~~~g~~~~~~~ 477 (650)
T KOG2188|consen 400 VGSVIEELAPKLSSLLEQGNSGVVASL--IAASARLGSYQDKMLQQLIQAFHAASESKKNILPCLLFSLTLFGCVGEWFL 477 (650)
T ss_pred HHHHHHHHhHHHHHHHHcCCchHhHHH--HHHHHhhchhHHHHHHHHHHHHhcCChhhcchHHHHHHHhhhccccccccc
Confidence 67777655443333 11 11111222 2355667777777666444442 233344443332222 12555
Q ss_pred CCCh--HHHHHHHHHHHHHhhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHhhcc--cccccccc
Q 010504 361 TNSS--KEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNR--KVILPIIF 436 (508)
Q Consensus 361 tns~--KEv~FL~EleeiLe~~~~~eF~~i~~pLF~~la~Ci~S~hfqVAErAL~lWnNe~i~~li~~n~--~~IlPii~ 436 (508)
|+-- +=-+++.||- ++-.+--+.+..|+.|.- +|+-+.+.+|.+.-.+|...- ..+=+++-
T Consensus 478 t~~~h~~ga~lle~lv------------~f~k~~i~~litsll~L~---~eqi~e~~~~~~~ShlIeavL~S~~l~~~~~ 542 (650)
T KOG2188|consen 478 TEKFHQKGAVLLEELV------------NFSKTHIQTLITSLLSLS---EEQILEMSCNGVGSHLIEAVLASKDLGEKIK 542 (650)
T ss_pred HHHHhhchhHHHHHHH------------hhchhhhHHHHHHHHhhh---HHHHHHHhcCCchHHHHHHHHHhccccHHHH
Confidence 5433 2244444433 222334455667777543 677777888886666665442 23556667
Q ss_pred HHHHhhhcccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHH
Q 010504 437 PALEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQKFKESEAKV 484 (508)
Q Consensus 437 paL~~~s~~HWn~~V~~la~~vlk~l~e~D~~lf~~~~~~~~~~~~~~ 484 (508)
+-|.....+||- +|++++.- +.+=.+.|+.|...|++.-+++
T Consensus 543 ~kLi~~l~g~~~----~La~~~~G--Srv~eK~wea~~~~~k~rIake 584 (650)
T KOG2188|consen 543 EKLINILDGSFV----TLALSTFG--SRVFEKCWEATDVLYKERIAKE 584 (650)
T ss_pred HHHHHHhhccch----heeecCcc--cHHHHHHHHHhhHHHHHHHHHH
Confidence 777777778884 44444221 0111245555555555554443
No 20
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=31.15 E-value=1.9e+02 Score=33.51 Aligned_cols=103 Identities=21% Similarity=0.393 Sum_probs=62.8
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHhhhcc---hhHHHHH--hh-------c-------cccccccccHHHHhhh----cccc
Q 010504 391 PLFRQIASCLSSSHFQVAERALYLWNN---DHIENLI--RQ-------N-------RKVILPIIFPALEKNG----CNHW 447 (508)
Q Consensus 391 pLF~~la~Ci~S~hfqVAErAL~lWnN---e~i~~li--~~-------n-------~~~IlPii~paL~~~s----~~HW 447 (508)
.||...++-+-|+|=+||-.|.-||.- |.+..-+ ++ | ...|+|.++.-|.+-. ..-|
T Consensus 263 aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdW 342 (858)
T COG5215 263 ALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDW 342 (858)
T ss_pred HHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCcccccc
Confidence 488899999999999999999999931 2222211 11 1 2348888888888722 4579
Q ss_pred hHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010504 448 NQVVQNLTVNVRKIFSEIDPELFDECLQKFKESEAKVEEIRTQCDASWKRLEEIAA 503 (508)
Q Consensus 448 n~~V~~la~~vlk~l~e~D~~lf~~~~~~~~~~~~~~~~~~~~r~~~W~~l~~~A~ 503 (508)
|..+- |...|++|.+.--+.--+=.-.|-+ +--|.+.|...|.++.
T Consensus 343 n~sma--A~sCLqlfaq~~gd~i~~pVl~FvE--------qni~~~~w~nreaavm 388 (858)
T COG5215 343 NPSMA--ASSCLQLFAQLKGDKIMRPVLGFVE--------QNIRSESWANREAAVM 388 (858)
T ss_pred chhhh--HHHHHHHHHHHhhhHhHHHHHHHHH--------HhccCchhhhHHHHHH
Confidence 97654 5556666655433222211112222 2234567888877664
No 21
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=31.10 E-value=2.9e+02 Score=26.30 Aligned_cols=56 Identities=20% Similarity=0.393 Sum_probs=41.5
Q ss_pred HHHHHHHHHhhCChhHHHhhH------HHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHhh
Q 010504 369 FLSELEEVLEATQPPEFQKCM------VPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQ 426 (508)
Q Consensus 369 FL~EleeiLe~~~~~eF~~i~------~pLF~~la~Ci~S~hfqVAErAL~lWnNe~i~~li~~ 426 (508)
+=+-+.+++..++-+++.... .+.|+.+-+.+.|+-||..-.+ +|+|+.+.+++..
T Consensus 103 ~~g~~~di~~~lP~~~l~aL~~~K~~~s~~F~~f~~~l~S~ef~~~~~~--~~~~~~~~~~~~~ 164 (179)
T PF06757_consen 103 LNGFVDDILALLPRDKLRALYEEKLATSPEFAEFVEALRSPEFQQLYNA--LWASPEFQRLLNE 164 (179)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHcCHHHHHHHHH--HHcCHHHHHHHHH
Confidence 344455555666666665432 6899999999999999987776 5899999888754
No 22
>PF14724 mit_SMPDase: Mitochondrial-associated sphingomyelin phosphodiesterase
Probab=30.39 E-value=4.2e+02 Score=31.58 Aligned_cols=116 Identities=18% Similarity=0.332 Sum_probs=75.9
Q ss_pred HHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCCh------------h--------H---HH--h--hHHHHHHHHHHH
Q 010504 347 ADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQP------------P--------E---FQ--K--CMVPLFRQIASC 399 (508)
Q Consensus 347 a~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~------------~--------e---F~--~--i~~pLF~~la~C 399 (508)
.-.+++..+.|||...|-+ .-+|--|..++| + . |. + +=..||..+..+
T Consensus 370 LY~FL~~~f~~wPLdsSFr-----~VLE~WLSYIQPWRY~~~~~~~~~~~~~~~~~~~W~~FV~~Nl~~YT~lf~~fl~R 444 (765)
T PF14724_consen 370 LYRFLRHCFDHWPLDSSFR-----VVLELWLSYIQPWRYTPEKQSPQSESQDRPVSERWAPFVLENLLFYTSLFQGFLPR 444 (765)
T ss_pred HHHHHHHhccCCCChHHHH-----HHHHHHHHhhCCeecCCccCCCccccccccchHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4457788999999998844 446666766654 1 1 11 0 112355554443
Q ss_pred h-----CC-CcHHHHHHHHhhhcchhHHHHHhhcccccccc------------ccHHHHhhhcccchHHHHHHHHHHHHH
Q 010504 400 L-----SS-SHFQVAERALYLWNNDHIENLIRQNRKVILPI------------IFPALEKNGCNHWNQVVQNLTVNVRKI 461 (508)
Q Consensus 400 i-----~S-~hfqVAErAL~lWnNe~i~~li~~n~~~IlPi------------i~paL~~~s~~HWn~~V~~la~~vlk~ 461 (508)
. .+ -|.++--|.+.+++-+.+..+|.+.-+....- +-|.....--..|++++.+.+..|..-
T Consensus 445 ~~r~Dl~~~~na~ml~RvakVfsQ~~L~~~l~~~E~l~~~~~~~~~~~~~~~~~~~~~~~S~~s~~~~~~t~~~~~vksh 524 (765)
T PF14724_consen 445 FLRLDLSSPKNALMLFRVAKVFSQPNLAEMLQNGEQLFLEPEHGFPHRQHRVNLTPSKSGSFLSSWNPAVTDASFKVKSH 524 (765)
T ss_pred HHhcccccchhHHHHHHHHHHhCchhHHHHHHHHHHHhcCCccccCCCccccccCcccCCCcccCCCccchhHHHHHHHH
Confidence 2 22 45788899999999999999998765544432 122333233478999999999999998
Q ss_pred HHhhCH
Q 010504 462 FSEIDP 467 (508)
Q Consensus 462 l~e~D~ 467 (508)
.+++..
T Consensus 525 v~~Le~ 530 (765)
T PF14724_consen 525 VYELEG 530 (765)
T ss_pred HHhhhc
Confidence 888843
No 23
>cd07920 Pumilio Pumilio-family RNA binding domain. Puf repeats (also labelled PUM-HD or Pumilio homology domain) mediate sequence specific RNA binding in fly Pumilio, worm FBF-1 and FBF-2, and many other proteins such as vertebrate Pumilio. These proteins function as translational repressors in early embryonic development by binding to sequences in the 3' UTR of target mRNAs, such as the nanos response element (NRE) in fly Hunchback mRNA, or the point mutation element (PME) in worm fem-3 mRNA. Other proteins that contain Puf domains are also plausible RNA binding proteins. Yeast PUF1 (JSN1), for instance, appears to contain a single RNA-recognition motif (RRM) domain. Puf repeat proteins have been observed to function asymmetrically and may be responsible for creating protein gradients involved in the specification of cell fate and differentiation. Puf domains usually occur as a tandem repeat of 8 domains. This model encompasses all 8 tandem repeats. Some proteins may have fewer (canon
Probab=30.22 E-value=5.8e+02 Score=25.70 Aligned_cols=71 Identities=8% Similarity=-0.005 Sum_probs=37.4
Q ss_pred CcccHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCChhHHHhhHHHHHHHHHHHhCCCcH-HHHHHHHhhh
Q 010504 343 DCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHF-QVAERALYLW 415 (508)
Q Consensus 343 Dp~La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~~eF~~i~~pLF~~la~Ci~S~hf-qVAErAL~lW 415 (508)
+++-...+++.+..+|..-...|-- -.-++.+++..++++...++.-+...+...+..++- -|..++|...
T Consensus 141 ~~~~~~~i~~~l~~~~~~l~~~~~G--~~vvq~~l~~~~~~~~~~l~~~l~~~~~~L~~d~~Gn~vvq~~l~~~ 212 (322)
T cd07920 141 PPEDLQFIIDAFKGNCVALSTHPYG--CRVIQRCLEHCSEEQREPLLEEILEHALELVQDQFGNYVVQHVLELG 212 (322)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCccc--cHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHhcC
Confidence 3444555666666555432222211 112566667667777666666666666555555443 4555555443
No 24
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=29.04 E-value=6.9e+02 Score=26.13 Aligned_cols=74 Identities=12% Similarity=0.187 Sum_probs=43.6
Q ss_pred CCccccchhHHHHHHHHHHhCcccH----H---HHHHHhhccCCCCCChHHHHHHHHHHHHHhhCChhHHHhhHHHHHHH
Q 010504 323 KCLAMYHQPLSYCITQFVEKDCKLA----D---TVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQ 395 (508)
Q Consensus 323 ~~~~~yh~qL~yci~qFveKDp~La----~---~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~~eF~~i~~pLF~~ 395 (508)
+.+......+..|....+.+|-.=. . ..++.+.++=| ..+-.+++++|..+ ..-
T Consensus 109 ~~v~~I~~~vf~~Tl~MI~~d~~~yPe~r~~ff~LL~~i~~~~f---------------~~l~~lp~~~f~~~----ids 169 (319)
T PF08767_consen 109 PQVPQILEAVFECTLPMINKDFEEYPEHRVNFFKLLRAINEHCF---------------PALLQLPPEQFKLV----IDS 169 (319)
T ss_dssp CCHHHHHHHHHHHHHHHHSSTSSSSHHHHHHHHHHHHHHHHHHT---------------HHHHHS-HHHHHHH----HHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhhhhChHHHHHHHHHHHHHHHHhH---------------HHHHcCCHHHHHHH----HHH
Confidence 3444555667788888887764422 1 12222222211 12334678887764 466
Q ss_pred HHHHhCCCcHHHHHHHHhhh
Q 010504 396 IASCLSSSHFQVAERALYLW 415 (508)
Q Consensus 396 la~Ci~S~hfqVAErAL~lW 415 (508)
+.-++.+++..|++.+|...
T Consensus 170 i~wg~kh~~~~I~~~~L~~l 189 (319)
T PF08767_consen 170 IVWGFKHTNREISETGLNIL 189 (319)
T ss_dssp HHHHHTSSSHHHHHHHHHHH
T ss_pred HHHHhCCCcHHHHHHHHHHH
Confidence 67778889999999988654
No 25
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=28.28 E-value=97 Score=27.07 Aligned_cols=82 Identities=15% Similarity=0.299 Sum_probs=52.8
Q ss_pred HHHHHhCcccHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCCh---hHH----HhhHHHHHHHHHHHhCCCcHHHHH
Q 010504 337 TQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQP---PEF----QKCMVPLFRQIASCLSSSHFQVAE 409 (508)
Q Consensus 337 ~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~---~eF----~~i~~pLF~~la~Ci~S~hfqVAE 409 (508)
++|+-....-+..++..+.++=..+.+.+-+-.|.-+.+|+-.... .+| ..+....|..+.......+-+-..
T Consensus 20 t~~~~~~~~~a~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ki~ 99 (121)
T smart00582 20 TKWAIEHASHAKEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQDALRDVLGAANDETKKKIR 99 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 3344334444556666666666667777778888889998876521 234 445555666666655545666778
Q ss_pred HHHhhhcch
Q 010504 410 RALYLWNND 418 (508)
Q Consensus 410 rAL~lWnNe 418 (508)
+-+.+|..-
T Consensus 100 kll~iW~~~ 108 (121)
T smart00582 100 RLLNIWEER 108 (121)
T ss_pred HHHHHHhcC
Confidence 888999873
No 26
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=28.15 E-value=75 Score=34.88 Aligned_cols=106 Identities=19% Similarity=0.357 Sum_probs=63.4
Q ss_pred CCCchhhHHHHHHHHHhcCCcCChHHhhccCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccccCCh--HHHHHHHHH
Q 010504 194 PAWPHLQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHR--PFIRKAINN 271 (508)
Q Consensus 194 paWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fv~~Ll~lfdSeDpRERd~LKtiLHriYgKf~~~R--~fIRk~Inn 271 (508)
.+..||+-|+.+|.+.+.|...|..- + ..+..++..+.-+ .=..|+++|+.-+..+....| .|+|+-+
T Consensus 195 ~~~~~l~~iLgvFQkLi~sk~~D~~g----F--~LL~~iv~~~p~~--~l~~yl~~I~~lll~RLq~skT~kf~~~fv-- 264 (435)
T PF03378_consen 195 VANNQLEPILGVFQKLIASKANDHYG----F--DLLESIVENLPPE--ALEPYLKQIFTLLLTRLQSSKTEKFVKRFV-- 264 (435)
T ss_dssp ---S-CHHHHHHHHHHHT-TTCHHHH----H--HHHHHHHHHS-HH--HHGGGHHHHHHHHHHHHHHC--HHHHHHHH--
T ss_pred cchhhHHHHHHHHHHHHCCCCcchHH----H--HHHHHHHHHCCHH--HHHHHHHHHHHHHHHHHhhCCcHHHHHHHH--
Confidence 56799999999999999987655321 1 2344455555321 113477887777777665544 4777776
Q ss_pred HHHHhhhcccCCcChHHHHHHHHHHHhccCCCcHHHHHHHHHHHhhcC
Q 010504 272 IFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIPL 319 (508)
Q Consensus 272 if~~fiyEte~~nGIaELLeIlgSIInGFa~PLKeEHk~Fl~rvLiPL 319 (508)
+|+.++. ...|...+.+++.+|-.|. ....+.++++|-
T Consensus 265 ~F~~~~~---~~~g~~~li~~id~IQ~gl-------F~~il~~v~lp~ 302 (435)
T PF03378_consen 265 VFLSLFA---IKYGPDFLIQTIDSIQPGL-------FGMILEKVWLPD 302 (435)
T ss_dssp HHHHHHH---HHH-HHHHHHHHHTTSTTH-------HHHHHHHTHHHH
T ss_pred HHHHHHH---HHcCHHHHHHHHHHhcCCc-------HHHHHHHHhcCc
Confidence 3433321 1129999999999998884 346677888883
No 27
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=26.31 E-value=2.7e+02 Score=24.10 Aligned_cols=88 Identities=18% Similarity=0.278 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHhCcccHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCC---hhHHHhhHHHHHHHHHHHhCCCcHHH
Q 010504 331 PLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQ---PPEFQKCMVPLFRQIASCLSSSHFQV 407 (508)
Q Consensus 331 qL~yci~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~---~~eF~~i~~pLF~~la~Ci~S~hfqV 407 (508)
+-..-+++++..+..-+..++..+.+|=-.+.+.+-+.+|.-+.+|+-.+. ...|.....++|....+-.+..+-+=
T Consensus 19 ~~I~~lt~~a~~~~~~a~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~k 98 (114)
T cd03562 19 PSIQTLTKLAIENRKHAKEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKK 98 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 334445667777777788888888888888888888999999999998752 45677776888876666445455555
Q ss_pred HHHHHhhhcch
Q 010504 408 AERALYLWNND 418 (508)
Q Consensus 408 AErAL~lWnNe 418 (508)
..|-+.+|..-
T Consensus 99 l~rl~~iW~~~ 109 (114)
T cd03562 99 LERLLNIWEER 109 (114)
T ss_pred HHHHHHHccCC
Confidence 66677778654
No 28
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=26.18 E-value=4.9e+02 Score=24.42 Aligned_cols=50 Identities=18% Similarity=0.304 Sum_probs=31.6
Q ss_pred HHHHHHhhcCCCCChhH-HHHHHHHHHHHhccccCChHHHHHHHHHHHHHh
Q 010504 227 SFVLKLLDLFDSEDPRE-REYLKTILHRIYGKFMVHRPFIRKAINNIFFRF 276 (508)
Q Consensus 227 ~Fv~~Ll~lfdSeDpRE-Rd~LKtiLHriYgKf~~~R~fIRk~Innif~~f 276 (508)
.++..|+..+.+.||.- ++..-..|.+||..--+.-.+.|+.....+-.|
T Consensus 67 ~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~ 117 (165)
T PF08167_consen 67 QWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKF 117 (165)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHH
Confidence 35666777777665544 666677777777766666666677655444444
No 29
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=25.95 E-value=7.3e+02 Score=27.35 Aligned_cols=67 Identities=13% Similarity=0.284 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHhCcccHH--HHHHHhhccCCC--CCChHHHHHHHHHHHHHhhCChhHHHhhHHHHHHHH
Q 010504 330 QPLSYCITQFVEKDCKLAD--TVIKGLLKYWPI--TNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQI 396 (508)
Q Consensus 330 ~qL~yci~qFveKDp~La~--~vi~gLLk~WP~--tns~KEv~FL~EleeiLe~~~~~eF~~i~~pLF~~l 396 (508)
+.|...+..|++|+|.... .-+.++|..--+ ++..-+.-=..-|+.|++.++.+..+..+..+|..+
T Consensus 177 PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D~~gF~LL~~iv~~~p~~~l~~yl~~I~~ll 247 (435)
T PF03378_consen 177 PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKANDHYGFDLLESIVENLPPEALEPYLKQIFTLL 247 (435)
T ss_dssp HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHS-HHHHGGGHHHHHHHH
T ss_pred CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 6688889999999998652 111222211111 222234445678999999999987766655554433
No 30
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=25.87 E-value=5.4e+02 Score=23.87 Aligned_cols=81 Identities=10% Similarity=0.105 Sum_probs=58.5
Q ss_pred HHHHHHHHhCcccHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCChhHHHhhH-HHHHHHHHHHhC------CCcHH
Q 010504 334 YCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCM-VPLFRQIASCLS------SSHFQ 406 (508)
Q Consensus 334 yci~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~~eF~~i~-~pLF~~la~Ci~------S~hfq 406 (508)
-=|...|..++.-+...++.|.|-=-..|+.-++.-|.-|+.+...|...=-+.+. ......+.+.++ ..|..
T Consensus 23 leicD~In~~~~~~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~ 102 (139)
T cd03567 23 QAFCEQINKEPEGPQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEK 102 (139)
T ss_pred HHHHHHHHcCCccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHH
Confidence 33456678899999999999998877788777777799999998888653333333 344455666664 26889
Q ss_pred HHHHHHhh
Q 010504 407 VAERALYL 414 (508)
Q Consensus 407 VAErAL~l 414 (508)
|-+|.|.+
T Consensus 103 Vk~kil~l 110 (139)
T cd03567 103 VKTKIIEL 110 (139)
T ss_pred HHHHHHHH
Confidence 99988765
No 31
>TIGR00777 ahpD alkylhydroperoxidase, AhpD family. Members of this family are alkylhydroperoxidases, which catalyze the reduction of peroxides to their corresponding alcohols via oxidation of cysteine residues. In these alkylhydroperoxidases, the cysteines are located in a conserved -CXXC- motif located towards the COOH terminus. In Mycobacterium tuberculosis, two non-homologous alkylhydroperoxidases, AhpD and AhpC, are found in the same operon.
Probab=24.65 E-value=87 Score=30.57 Aligned_cols=15 Identities=33% Similarity=0.374 Sum_probs=12.1
Q ss_pred HHHHHHHHHHhhhcc
Q 010504 266 RKAINNIFFRFIFET 280 (508)
Q Consensus 266 Rk~Innif~~fiyEt 280 (508)
.-.|||+||||+.=.
T Consensus 76 ~MamnNv~Yr~~hl~ 90 (177)
T TIGR00777 76 IMAMNNVFYRGRHLL 90 (177)
T ss_pred HHhhhhHHHHhHhhc
Confidence 567999999998643
No 32
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=24.62 E-value=5.8e+02 Score=23.98 Aligned_cols=85 Identities=15% Similarity=0.224 Sum_probs=57.3
Q ss_pred HHHhhHHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHhhccccccccccHHHHhhhcccchHHHHHHHHHHHHHHH
Q 010504 384 EFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVRKIFS 463 (508)
Q Consensus 384 eF~~i~~pLF~~la~Ci~S~hfqVAErAL~lWnNe~i~~li~~n~~~IlPii~paL~~~s~~HWn~~V~~la~~vlk~l~ 463 (508)
.|..++.|....+..|+.+++..|=+.|+.+.. .|+.++.-.+=+.++..+.... .-=|+.|++.|...+.-+.
T Consensus 18 r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls-----~Li~~d~ik~k~~l~~~~l~~l-~D~~~~Ir~~A~~~~~e~~ 91 (178)
T PF12717_consen 18 RYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLS-----HLILEDMIKVKGQLFSRILKLL-VDENPEIRSLARSFFSELL 91 (178)
T ss_pred hCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHH-----HHHHcCceeehhhhhHHHHHHH-cCCCHHHHHHHHHHHHHHH
Confidence 345677888899999999999999999998754 4555443333333333333222 2228889999999888877
Q ss_pred hh-CHHHHHHHH
Q 010504 464 EI-DPELFDECL 474 (508)
Q Consensus 464 e~-D~~lf~~~~ 474 (508)
.. +|..+....
T Consensus 92 ~~~~~~~i~~~~ 103 (178)
T PF12717_consen 92 KKRNPNIIYNNF 103 (178)
T ss_pred HhccchHHHHHH
Confidence 77 776555433
No 33
>cd08324 CARD_NOD1_CARD4 Caspase activation and recruitment domain similar to that found in NOD1. Caspase activation and recruitment domain (CARD) found in human NOD1 (CARD4) and similar proteins. NOD1 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD1, as well as NOD2, the N-terminal effector domain is a CARD. Nod1-CARD has been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form hom
Probab=23.86 E-value=55 Score=28.35 Aligned_cols=38 Identities=29% Similarity=0.516 Sum_probs=34.4
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHhccccCChHHH
Q 010504 228 FVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFI 265 (508)
Q Consensus 228 Fv~~Ll~lfdSeDpRERd~LKtiLHriYgKf~~~R~fI 265 (508)
=+.+|+++..|--.-..++...+|+..|.-+..+|||.
T Consensus 47 kmRkLld~v~akG~~~k~~F~~iL~e~~~~y~~~~~~~ 84 (85)
T cd08324 47 KVRKILDLVQSKGEEVSEYFLYLLQQLADAYVDLRPWL 84 (85)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHHHhhhhhhccc
Confidence 35679999999999999999999999999999999985
No 34
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=23.60 E-value=5.5e+02 Score=23.51 Aligned_cols=88 Identities=14% Similarity=0.142 Sum_probs=58.2
Q ss_pred HHHHHHHHhhCChhHHHhhHHHHHHHHHHHhCCCcH-HHHHHHHhh---hcchhHHHHHhhccccccccccHHHHhh---
Q 010504 370 LSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHF-QVAERALYL---WNNDHIENLIRQNRKVILPIIFPALEKN--- 442 (508)
Q Consensus 370 L~EleeiLe~~~~~eF~~i~~pLF~~la~Ci~S~hf-qVAErAL~l---WnNe~i~~li~~n~~~IlPii~paL~~~--- 442 (508)
++||.++.-. ++.+|..++.-|.++|.. .|+|. .=|-|-|.. --++.|+..+..|...|=- .....
T Consensus 22 ~~Eia~~t~~-s~~~~~ei~d~L~kRL~~--~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~----~~~f~g~~ 94 (122)
T cd03572 22 YEEIAKLTRK-SVGSCQELLEYLLKRLKR--SSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRE----CANYKGPP 94 (122)
T ss_pred HHHHHHHHHc-CHHHHHHHHHHHHHHhcC--CCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHH----HHHcCCCC
Confidence 5566555444 788999999999999997 77886 223333322 2357888888888643322 11111
Q ss_pred ---hcccchHHHHHHHHHHHHHHHh
Q 010504 443 ---GCNHWNQVVQNLTVNVRKIFSE 464 (508)
Q Consensus 443 ---s~~HWn~~V~~la~~vlk~l~e 464 (508)
.-.-+++.||.-|..+++++..
T Consensus 95 Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 95 DPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred CcccCcchhHHHHHHHHHHHHHHhc
Confidence 1245899999999999987654
No 35
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=23.27 E-value=9.9e+02 Score=26.03 Aligned_cols=131 Identities=16% Similarity=0.102 Sum_probs=65.9
Q ss_pred CCCCChHHHHHHHHHHHHH----hhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHhhccc-----
Q 010504 359 PITNSSKEVMFLSELEEVL----EATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRK----- 429 (508)
Q Consensus 359 P~tns~KEv~FL~EleeiL----e~~~~~eF~~i~~pLF~~la~Ci~S~hfqVAErAL~lWnNe~i~~li~~n~~----- 429 (508)
|..+...=+.||.|+-+=+ +.........+.+++++.+-.| +.+.+|---|..+ ++.|-+++.
T Consensus 224 p~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v--~e~~~~k~~a~e~------l~~mv~~~~~~~~~ 295 (373)
T PF14911_consen 224 PPPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLV--NEEPQVKKLATEL------LQYMVESCQVGSSG 295 (373)
T ss_pred CCCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhc--CCCcchhHHHHHH------HHHHHHcccccCcc
Confidence 6667777777777766554 2233444566778888888777 3344554444432 222222211
Q ss_pred cccccccHHHHhhhccc--chHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH----HHHHHH-HHHHHHHHHHHHHH
Q 010504 430 VILPIIFPALEKNGCNH--WNQVVQNLTVNVRKIFSEIDPELFDECLQKFKES----EAKVEE-IRTQCDASWKRLEE 500 (508)
Q Consensus 430 ~IlPii~paL~~~s~~H--Wn~~V~~la~~vlk~l~e~D~~lf~~~~~~~~~~----~~~~~~-~~~~r~~~W~~l~~ 500 (508)
.+=-.+-.++..-.+.| |+ -.-.+..+.-+.++||++-..+.-...+. |.++.. +...-++.|.||+.
T Consensus 296 ~~~~~l~s~lrsfvqk~l~~~---t~~~f~~l~~vA~l~p~lV~~Lip~i~q~l~~~E~kRG~G~d~~lR~~~~rL~~ 370 (373)
T PF14911_consen 296 EPREQLTSVLRSFVQKYLAHY---TYQYFQFLEKVAELDPQLVISLIPTIRQSLKDSERKRGLGRDVALRKALSRLLS 370 (373)
T ss_pred hHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 11111111221111121 11 23345666677788988877665544333 333222 12344677888765
No 36
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=22.33 E-value=9.4e+02 Score=26.72 Aligned_cols=80 Identities=15% Similarity=0.219 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHhh--cccccc-ccccHHHHhhhcccchHHHHHHHHHHHHHHHhhC
Q 010504 390 VPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQ--NRKVIL-PIIFPALEKNGCNHWNQVVQNLTVNVRKIFSEID 466 (508)
Q Consensus 390 ~pLF~~la~Ci~S~hfqVAErAL~lWnNe~i~~li~~--n~~~Il-Pii~paL~~~s~~HWn~~V~~la~~vlk~l~e~D 466 (508)
.-++..+..|+.++...||+.|..+..+ +.+. ..+.++ +-+.+.|.+...+ =|..+|--++.++-.+....
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~-----l~~~~~~~~~l~~~~~~~~L~~l~~~-~~~~vR~Rv~el~v~i~~~S 191 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKK-----LASHPEGLEQLFDSNLLSKLKSLMSQ-SSDIVRCRVYELLVEIASHS 191 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHH-----HhCCchhHHHHhCcchHHHHHHHHhc-cCHHHHHHHHHHHHHHHhcC
Confidence 4488999999999999999999876432 2211 111121 1125566655433 37788888888888889999
Q ss_pred HHHHHHHHH
Q 010504 467 PELFDECLQ 475 (508)
Q Consensus 467 ~~lf~~~~~ 475 (508)
+++++.|..
T Consensus 192 ~~~~~~~~~ 200 (503)
T PF10508_consen 192 PEAAEAVVN 200 (503)
T ss_pred HHHHHHHHh
Confidence 999998876
No 37
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=22.11 E-value=3.9e+02 Score=29.85 Aligned_cols=44 Identities=9% Similarity=0.391 Sum_probs=30.9
Q ss_pred HHHHHHHHHhcCCc--CChHHhhccCCHHHHHHHhhcCCCCChhHH
Q 010504 201 IVYEFFLRFVASPE--TDAKLAKRYIDHSFVLKLLDLFDSEDPRER 244 (508)
Q Consensus 201 lVYeillrfv~s~~--~d~k~ak~~id~~Fv~~Ll~lfdSeDpRER 244 (508)
.+-|+|+|+|.... ....+..=.-++.+|.+|+++|+.+...++
T Consensus 34 ~ImDlLLklIs~d~~~~~~~ilewL~~q~LI~~Li~~L~p~~~~~~ 79 (475)
T PF04499_consen 34 AIMDLLLKLISTDKPESPTGILEWLAEQNLIPRLIDLLSPSYSSDV 79 (475)
T ss_pred HHHHHHHHHHccCcccchHHHHHHHHHhCHHHHHHHHhCCCCCHHH
Confidence 57899999998544 223344444578899999999985555554
No 38
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=21.14 E-value=1.1e+03 Score=27.90 Aligned_cols=145 Identities=20% Similarity=0.297 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhhcCCCCCCccccchhHHHHHHHHHHhCcccHH--HHHHHhhccCCCCCChHH-HHHHHHHHHH-Hh---
Q 010504 306 EEHKLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKDCKLAD--TVIKGLLKYWPITNSSKE-VMFLSELEEV-LE--- 378 (508)
Q Consensus 306 eEHk~Fl~rvLiPLHk~~~~~~yh~qL~yci~qFveKDp~La~--~vi~gLLk~WP~tns~KE-v~FL~Eleei-Le--- 378 (508)
+.--..+.|.|+-+||.+-+ .|.|| ||+-+.+.++. .+...-|+-=|+|--.+- -+||..+++. |+
T Consensus 85 ~~vn~c~er~lv~mHkmpRI-----wl~Yl--q~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets 157 (835)
T KOG2047|consen 85 ESVNNCFERCLVFMHKMPRI-----WLDYL--QFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETS 157 (835)
T ss_pred HHHHHHHHHHHHHHhcCCHH-----HHHHH--HHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHH
Confidence 34445668999999998865 45565 55555555443 233333333333322111 1333333321 00
Q ss_pred --------hCChhHHHhh---------HHHHHHHHHHHhCCCcHHHHH--HHHhhhcchhHHHHHhhccccccccccHHH
Q 010504 379 --------ATQPPEFQKC---------MVPLFRQIASCLSSSHFQVAE--RALYLWNNDHIENLIRQNRKVILPIIFPAL 439 (508)
Q Consensus 379 --------~~~~~eF~~i---------~~pLF~~la~Ci~S~hfqVAE--rAL~lWnNe~i~~li~~n~~~IlPii~paL 439 (508)
.+.|+.-... ..-.-++++.-++-++|--.- .+-.+|. .+.+||.+|...+.-+=+.++
T Consensus 158 ~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~--elcdlis~~p~~~~slnvdai 235 (835)
T KOG2047|consen 158 IRVYRRYLKVAPEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWL--ELCDLISQNPDKVQSLNVDAI 235 (835)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHH--HHHHHHHhCcchhcccCHHHH
Confidence 1122211110 112345666666666653322 1445663 577899999999999999999
Q ss_pred HhhhcccchHHHHHHHHHHH
Q 010504 440 EKNGCNHWNQVVQNLTVNVR 459 (508)
Q Consensus 440 ~~~s~~HWn~~V~~la~~vl 459 (508)
.|.+..-...-+-.|-+.+-
T Consensus 236 iR~gi~rftDq~g~Lw~SLA 255 (835)
T KOG2047|consen 236 IRGGIRRFTDQLGFLWCSLA 255 (835)
T ss_pred HHhhcccCcHHHHHHHHHHH
Confidence 98776655555444444433
Done!