BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010507
(508 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T5P|A Chain A, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|B Chain B, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|C Chain C, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|D Chain D, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|E Chain E, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|F Chain F, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|G Chain G, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|H Chain H, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|I Chain I, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|J Chain J, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|K Chain K, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
pdb|3T5P|L Chain L, Crystal Structure Of A Putative Diacylglycerol Kinase From
Bacillus Anthracis Str. Sterne
Length = 306
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 136 ELGD---FCAKDTRQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDL 192
E GD +C + + I+V GGDGTV + L E P +AIIP GT ND
Sbjct: 53 EQGDATKYCQEFASKVDLIIVFGGDGTVFECTNGLAPL-----EIRPTLAIIPGGTCNDF 107
Query: 193 SRSFG 197
SR+ G
Sbjct: 108 SRTLG 112
>pdb|3S40|A Chain A, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|B Chain B, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|C Chain C, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
pdb|3S40|D Chain D, The Crystal Structure Of A Diacylglycerol Kinases From
Bacillus Anthracis Str. Sterne
Length = 304
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 136 ELGD---FCAKDTRQKMRIVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDL 192
E GD +C + + I+V GGDGTV + L E P +AIIP GT ND
Sbjct: 49 EQGDATKYCQEFASKVDLIIVFGGDGTVFECTNGLAPL-----EIRPTLAIIPGGTCNDF 103
Query: 193 SRSFG 197
SR+ G
Sbjct: 104 SRTLG 108
>pdb|2BON|A Chain A, Structure Of An Escherichia Coli Lipid Kinase (Yegs)
pdb|2BON|B Chain B, Structure Of An Escherichia Coli Lipid Kinase (Yegs)
Length = 332
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 151 IVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFG 197
++ GGDGT+ V S + +G + +P + I+PLGT ND + S G
Sbjct: 86 VIAGGGDGTINEV--STALIQCEGDD-IPALGILPLGTANDFATSVG 129
>pdb|2JGR|A Chain A, Crystal Structure Of Yegs In Complex With Adp
Length = 299
Score = 35.0 bits (79), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 151 IVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSFG 197
++ GGDGT+ V S + +G + +P + I+PLGT ND + S G
Sbjct: 61 VIAGGGDGTINEV--STALIQCEGDD-IPALGILPLGTANDFATSVG 104
>pdb|2QV7|A Chain A, Crystal Structure Of Diacylglycerol Kinase Dgkb In Complex
With Adp And Mg
pdb|2QVL|A Chain A, Crystal Structure Of Diacylglycerol Kinase
Length = 337
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 151 IVVAGGDGTVGWVLGSVGELNKQGREPVPPVAIIPLGTGNDLSRSF 196
++ AGGDGT+ V+ + E K R P + +IP GT ND R+
Sbjct: 84 LIAAGGDGTLNEVVNGIAE--KPNR---PKLGVIPXGTVNDFGRAL 124
>pdb|2P1R|A Chain A, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases.
pdb|2P1R|B Chain B, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases.
pdb|2P1R|C Chain C, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases.
pdb|2P1R|D Chain D, Crystal Structure Of Salmonella Typhimurium Yegs, A
Putative Lipid Kinase Homologous To Eukaryotic
Sphingosine And Diacylglycerol Kinases
Length = 299
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 5/48 (10%)
Query: 151 IVVAGGDGTVGWVLGSVGELNKQGREPVPP-VAIIPLGTGNDLSRSFG 197
++ GGDGT+ V ++ ++ R+ V P + ++PLGT ND + S G
Sbjct: 61 VIAGGGDGTINEVSTALIQI----RDGVAPALGLLPLGTANDFATSAG 104
>pdb|3NIP|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|E Chain E, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIP|F Chain F, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase Complexed With 1,6-Diaminohexane
pdb|3NIQ|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase
pdb|3NIQ|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa
Guanidinopropionase
Length = 326
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 88 NSRSGGRHGPELKERLQELMGKEQVFDLSEVKPHEFVQYG 127
+R+G RHGP L LM K V +S + P++ V+ G
Sbjct: 49 TNRAGARHGPREVRNLSSLMRK--VHHVSRIAPYDLVRVG 86
>pdb|4A57|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A57|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3)
pdb|4A59|A Chain A, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|B Chain B, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|C Chain C, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
pdb|4A59|D Chain D, Crystal Structure Of Toxoplasma Gondii Nucleoside
Triphosphate Diphosphohydrolase 3 (Ntpdase3) In Complex
With Amp
Length = 611
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 286 GLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGY- 344
LQ E LPE+ + V ++ +GM + L + +L G SN ++ G+
Sbjct: 279 NLQRERLLPERYPSADVVSVSFMQLGMASSAGLFLKELCSNDEFLQGGICSNPCLFKGFQ 338
Query: 345 -SCTQG 349
SC+ G
Sbjct: 339 QSCSAG 344
>pdb|4A5B|A Chain A, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 1
(Ntpdase1)
pdb|4A5B|B Chain B, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 1
(Ntpdase1)
Length = 611
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 286 GLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGY- 344
LQ E LPE+ + V ++ +GM + L + +L G SN ++ G+
Sbjct: 279 NLQRERLLPERYPSADVVSVSFMQLGMASSAGLFLKELCSNDEFLQGGICSNPCLFKGFQ 338
Query: 345 -SCTQG 349
SC+ G
Sbjct: 339 QSCSAG 344
>pdb|1ZOW|A Chain A, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|B Chain B, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|C Chain C, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|1ZOW|D Chain D, Crystal Structure Of S. Aureus Fabh, Beta-Ketoacyl Carrier
Protein Synthase Iii
pdb|3IL7|A Chain A, Crystal Structure Of S. Aureus Fabh
pdb|3IL7|B Chain B, Crystal Structure Of S. Aureus Fabh
Length = 313
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 48/112 (42%), Gaps = 24/112 (21%)
Query: 75 GVQPPEAPMVVFINSRSGGRHGPELKERLQELMGKEQV-----------FDLSEVKPHEF 123
G+QP + M++ + + +G P + LQE +G +V F S + ++
Sbjct: 67 GIQPEDIDMII-VATATGDMPFPTVANMLQERLGTGKVASMDQLAACSGFMYSMITAKQY 125
Query: 124 VQYG------LACLEKLAELGDFCAKDTRQKMRIVVAGGDGTVGWVLGSVGE 169
VQ G + +KL+++ D + T V GDG ++G V E
Sbjct: 126 VQSGDYHNILVVGADKLSKITDLTDRST------AVLFGDGAGAVIIGEVSE 171
>pdb|4A5A|A Chain A, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|B Chain B, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|C Chain C, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
pdb|4A5A|D Chain D, Crystal Structure Of The C258sC268S VARIANT OF TOXOPLASMA
GONDII Nucleoside Triphosphate Diphosphohydrolase 3
(Ntpdase3) In Complex With Magnesium And Amppnp
Length = 611
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 286 GLQIEGALPEKVNCYEGVFYNYFSIGMDAQVAYGFHHLRNEKPYLAQGPISNKLIYSGY- 344
LQ E LPE+ + V ++ +GM + L + +L G SN ++ G+
Sbjct: 279 NLQRERLLPERYPSADVVSVSFMQLGMASSAGLFLKELCSNDEFLQGGICSNPCLFKGFQ 338
Query: 345 -SCTQG 349
SC+ G
Sbjct: 339 QSCSAG 344
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,160,004
Number of Sequences: 62578
Number of extensions: 706904
Number of successful extensions: 1558
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1555
Number of HSP's gapped (non-prelim): 12
length of query: 508
length of database: 14,973,337
effective HSP length: 103
effective length of query: 405
effective length of database: 8,527,803
effective search space: 3453760215
effective search space used: 3453760215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)