BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010508
(508 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WPX|A Chain A, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
pdb|1YSC|A Chain A, 2.8 Angstroms Structure Of Yeast Serine Carboxypeptidase
Length = 421
Score = 253 bits (646), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 148/422 (35%), Positives = 222/422 (52%), Gaps = 38/422 (9%)
Query: 99 HHAGYYTLPHSQSARMFYFFFESRNNKS-DPVVIWLTGGPGCSSELALFYENGPFHIANN 157
+ GY + + F++ FESRN+ + DPV++WL GGPGCSS LF+E GP I +
Sbjct: 16 QYTGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFELGPSSIGPD 74
Query: 158 LSLVWNDYGWDKASNLLFVDQPTGTGFSYTSDKDDIRHDEEGVSN------DLYDFLQAF 211
L + N Y W+ + ++F+DQP GFSY+ GVSN D+Y+FL+ F
Sbjct: 75 LKPIGNPYSWNSNATVIFLDQPVNVGFSYSG--------SSGVSNTVAAGKDVYNFLELF 126
Query: 212 FAEHPQYAK--NDFYITGESYAGHYIPAFASRV--HKGNKEKQGIHINLKGFAIGNGLTD 267
F + P+Y DF+I GESYAGHYIP FAS + HK + NL IGNGLTD
Sbjct: 127 FDQFPEYVNKGQDFHIAGESYAGHYIPVFASEILSHKDR------NFNLTSVLIGNGLTD 180
Query: 268 PAIQYKEYTEYALNM----RLIKQSDYESINKLIPTCEHAIKTC-ESDGGDACSSSYAVC 322
P QY Y A ++ + ++ + C I++C +S +C + C
Sbjct: 181 PLTQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESCYDSQSVWSCVPATIYC 240
Query: 323 NSIFNKILGIAGDVNYYDIRKKCE-GDLCY-DFSNMERFLNEKSVREALGVGDIDFVSCS 380
N+ G N YDIRK CE G+LCY +++ +LN+ V+EA+G + SC+
Sbjct: 241 NNAQLAPYQRTGR-NVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAEVDHYESCN 299
Query: 381 STVYEAMLM--DWMRNFEVGIPTLLEDGIRVLIYAGEYDLICNWLGNSKWVHAMEWSGQK 438
+ L DWM+ + + LL + +L+YAG+ D ICNWLGN W + W +
Sbjct: 300 FDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLPWKYDE 359
Query: 439 DFGAAATVPF--KVDGAETGQIKSHGPLTFLKVHDAGHMVPMDQPKASLQMLQSWMQGKL 496
+F + + + G++KS+ T+L+V + GHMVP D P+ +L M+ W+ G
Sbjct: 360 EFASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVPFDVPENALSMVNEWIHGGF 419
Query: 497 AM 498
++
Sbjct: 420 SL 421
>pdb|1CPY|A Chain A, Site-Directed Mutagenesis On (Serine) Carboxypeptidase Y
From Yeast. The Significance Of Thr 60 And Met 398 In
Hydrolysis And Aminolysis Reactions
Length = 421
Score = 248 bits (634), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 146/422 (34%), Positives = 220/422 (52%), Gaps = 38/422 (9%)
Query: 99 HHAGYYTLPHSQSARMFYFFFESRNNKS-DPVVIWLTGGPGCSSELALFYENGPFHIANN 157
+ GY + + F++ FESRN+ + DPV++WL GGPGCSS LF+ GP I +
Sbjct: 16 QYTGYLDV-EDEDKHFFFWTFESRNDPAKDPVILWLNGGPGCSSLTGLFFALGPSSIGPD 74
Query: 158 LSLVWNDYGWDKASNLLFVDQPTGTGFSYTSDKDDIRHDEEGVSN------DLYDFLQAF 211
L + N Y W+ + ++F+DQP GFSY+ GVSN D+Y+FL+ F
Sbjct: 75 LKPIGNPYSWNSNATVIFLDQPVNVGFSYSG--------SSGVSNTVAAGKDVYNFLELF 126
Query: 212 FAEHPQYAK--NDFYITGESYAGHYIPAFASRV--HKGNKEKQGIHINLKGFAIGNGLTD 267
F + P+Y DF+I G SYAGHYIP FAS + HK + NL IGNGLTD
Sbjct: 127 FDQFPEYVNKGQDFHIAGASYAGHYIPVFASEILSHKDR------NFNLTSVLIGNGLTD 180
Query: 268 PAIQYKEYTEYALNM----RLIKQSDYESINKLIPTCEHAIKTC-ESDGGDACSSSYAVC 322
P QY Y A ++ + ++ + C I++C +S +C + C
Sbjct: 181 PLTQYNYYEPMACGEGGEPSVLPSEECSAMEDSLERCLGLIESCYDSQSVWSCVPATIYC 240
Query: 323 NSIFNKILGIAGDVNYYDIRKKCE-GDLCY-DFSNMERFLNEKSVREALGVGDIDFVSCS 380
N+ G N YDIRK CE G+LCY +++ +LN+ V+EA+G + SC+
Sbjct: 241 NNAQLAPYQRTGR-NVYDIRKDCEGGNLCYPTLQDIDDYLNQDYVKEAVGAEVDHYESCN 299
Query: 381 STVYEAMLM--DWMRNFEVGIPTLLEDGIRVLIYAGEYDLICNWLGNSKWVHAMEWSGQK 438
+ L DWM+ + + LL + +L+YAG+ D ICNWLGN W + W +
Sbjct: 300 FDINRNFLFAGDWMKPYHTAVTDLLNQDLPILVYAGDKDFICNWLGNKAWTDVLPWKYDE 359
Query: 439 DFGAAATVPF--KVDGAETGQIKSHGPLTFLKVHDAGHMVPMDQPKASLQMLQSWMQGKL 496
+F + + + G++KS+ T+L+V + GHMVP D P+ +L M+ W+ G
Sbjct: 360 EFASQKVRNWTASITDEVAGEVKSYKHFTYLRVFNGGHMVPFDVPENALSMVNEWIHGGF 419
Query: 497 AM 498
++
Sbjct: 420 SL 421
>pdb|1AC5|A Chain A, Crystal Structure Of Kex1(delta)p, A Prohormone-processing
Carboxypeptidase From Saccharomyces Cerevisiae
Length = 483
Score = 188 bits (478), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 139/433 (32%), Positives = 214/433 (49%), Gaps = 52/433 (12%)
Query: 100 HAGYYTL-----PHSQSARMFYFFFESRNNKSD-----PVVIWLTGGPGCSSELALFYEN 149
HAG+ L S+ + YFF++ NN S+ P++IWL GGPGCSS E+
Sbjct: 30 HAGHIPLRSEDADEQDSSDLEYFFWKFTNNDSNGNVDRPLIIWLNGGPGCSSMDGALVES 89
Query: 150 GPFHIANNLSLVWNDYGWDKASNLLFVDQPTGTGFSYTSDKDDIRHDE-------EGVSN 202
GPF + ++ L N+ W +LLF+DQPTGTGFS +KD+ + D+ E V+
Sbjct: 90 GPFRVNSDGKLYLNEGSWISKGDLLFIDQPTGTGFSVEQNKDEGKIDKNKFDEDLEDVTK 149
Query: 203 DLYDFLQAFFAEHPQYAKNDFYITGESYAGHYIPAFASRVHKGNK--EKQGIHINLKGFA 260
DFL+ +F P+ ++GESYAG YIP FA+ + NK + G +LK
Sbjct: 150 HFMDFLENYFKIFPEDLTRKIILSGESYAGQYIPFFANAILNHNKFSKIDGDTYDLKALL 209
Query: 261 IGNGLTDPAIQYKEYTEYALNMRLIKQS--DYESINKLIPTCEHAIKTCESDGGDACSSS 318
IGNG DP Q Y +A+ +LI +S +++ + C++ I + +D +A S
Sbjct: 210 IGNGWIDPNTQSLSYLPFAMEKKLIDESNPNFKHLTNAHENCQNLINSASTD--EAAHFS 267
Query: 319 YAVCNSIFNKIL---------GIAGDVNYYDIRKK-----CEGDLCYDFSNMERFLNEKS 364
Y C +I N +L G A +N Y+ K C + D S + +F +
Sbjct: 268 YQECENILNLLLSYTRESSQKGTADCLNMYNFNLKDSYPSCGMNWPKDISFVSKFFSTPG 327
Query: 365 VREALGVGDIDFV----SCSSTVYEAMLMDWMRNFEVGIPTLLEDGIRVLIYAGEYDLIC 420
V ++L + D D + C+++V + + +P LLE GI ++++ G+ DLIC
Sbjct: 328 VIDSLHL-DSDKIDHWKECTNSVGTKLSNPISKPSIHLLPGLLESGIEIVLFNGDKDLIC 386
Query: 421 NWLGNSKWVHAMEWSGQKDFGAAATVPF-------KVDGAE--TGQIKSHGPLTFLKVHD 471
N G + ++W G K F A V F D +E +G +K LTF+ V++
Sbjct: 387 NNKGVLDTIDNLKWGGIKGFSDDA-VSFDWIHKSKSTDDSEEFSGYVKYDRNLTFVSVYN 445
Query: 472 AGHMVPMDQPKAS 484
A HMVP D+ S
Sbjct: 446 ASHMVPFDKSLVS 458
>pdb|1IVY|A Chain A, Physiological Dimer Hpp Precursor
pdb|1IVY|B Chain B, Physiological Dimer Hpp Precursor
Length = 452
Score = 150 bits (379), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 126/472 (26%), Positives = 210/472 (44%), Gaps = 104/472 (22%)
Query: 90 PGPSVQ-EFGHHAGYYTLPHSQSARMFYFFFESRNN-KSDPVVIWLTGGPGCSSELALFY 147
PG + Q F ++GY L S S + Y+F ES+ + ++ PVV+WL GGPGCSS L
Sbjct: 11 PGLAKQPSFRQYSGY--LKSSGSKHLHYWFVESQKDPENSPVVLWLNGGPGCSSLDGLLT 68
Query: 148 ENGPFHI-ANNLSLVWNDYGWDKASNLLFVDQPTGTGFSYTSDKDDIRHDEEGVSNDLYD 206
E+GPF + + ++L +N Y W+ +N+L+++ P G GFSY+ DK +D E V+ ++
Sbjct: 69 EHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATNDTE-VAQSNFE 127
Query: 207 FLQAFFAEHPQYAKNDFYITGESYAGHYIPAFASRVHKGNKEKQGIHINLKGFAIGNGLT 266
LQ FF P+Y N ++TGESYAG YIP A V Q +NL+G A+GNGL+
Sbjct: 128 ALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLV------MQDPSMNLQGLAVGNGLS 181
Query: 267 -----DPAIQYKEYTEYALNMRLIKQSDYESINKLIPTCEHAIKTCESDGGDACSSSYAV 321
D ++ Y Y L RL + S+ C + + +
Sbjct: 182 SYEQNDNSLVYFAYYHGLLGNRL-----WSSLQ---------THCCSQNKCNFYDNKDLE 227
Query: 322 CNSIFNKILGIAGD--VNYYDIRKKCEGDL------------------------------ 349
C + ++ I G+ +N Y++ C G +
Sbjct: 228 CVTNLQEVARIVGNSGLNIYNLYAPCAGGVPSHFRYEKDTVVVQDLGNIFTRLPLKRMWH 287
Query: 350 ---------------CYDFSNMERFLNEKSVREALGVGD--IDFVSCSSTV-------YE 385
C + + +LN VR+AL + + + C+ V Y
Sbjct: 288 QALLRSGDKVRMDPPCTNTTAASTYLNNPYVRKALNIPEQLPQWDMCNFLVNLQYRRLYR 347
Query: 386 AMLMDWMRNFEVGIPTLLEDGIRVLIYAGEYDLICNWLGNSKWVHAMEWSGQKDFGAAAT 445
+M +++ L ++L+Y G+ D+ CN++G+ +V ++ +
Sbjct: 348 SMNSQYLK-------LLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKME-----VQR 395
Query: 446 VPFKVDGAETGQ-----IKSHGPLTFLKVHDAGHMVPMDQPKASLQMLQSWM 492
P+ V ++G+ +K + FL + AGHMVP D+P A+ M ++
Sbjct: 396 RPWLVKYGDSGEQIAGFVKEFSHIAFLTIKGAGHMVPTDKPLAAFTMFSRFL 447
>pdb|1BCR|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|A Chain A, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 263
Score = 142 bits (359), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 121/249 (48%), Gaps = 19/249 (7%)
Query: 90 PGPSVQEFGHHAGYYTLPHSQSARMFYFFFES-RNNKSDPVVIWLTGGPGCSS-ELALFY 147
PG +F ++GY T+ +FY E+ + + P+V+WL GGPGCSS
Sbjct: 15 PGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVAYGASE 74
Query: 148 ENGPFHI-ANNLSLVWNDYGWDKASNLLFVDQPTGTGFSYTSDKDDI-RHDEEGVSNDLY 205
E G F + LV N+Y W+K +N+LF+D P G GFSYT+ DI + ++D Y
Sbjct: 75 ELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSY 134
Query: 206 DFLQAFFAEHPQYAKNDFYITGESYAGHYIPAFASRVHKGNKEKQGIHINLKGFAIGNGL 265
FL +F P Y DFYI GESYAGHY+P + VH+ INLKGF +GNGL
Sbjct: 135 AFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPV----INLKGFMVGNGL 190
Query: 266 TDPAIQYKEYTEYALNMRLIKQSDYESINKLI---------PTCEHA--IKTCESDGGDA 314
D Y E+ N ++ Y + + P C+ A + T E D
Sbjct: 191 IDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAEQGNIDM 250
Query: 315 CSSSYAVCN 323
S VCN
Sbjct: 251 YSLYTPVCN 259
>pdb|1WHT|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 256
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 121/249 (48%), Gaps = 19/249 (7%)
Query: 90 PGPSVQEFGHHAGYYTLPHSQSARMFYFFFES-RNNKSDPVVIWLTGGPGCSS-ELALFY 147
PG +F ++GY T+ +FY E+ + + P+V+WL GGPGCSS
Sbjct: 11 PGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVAYGASE 70
Query: 148 ENGPFHI-ANNLSLVWNDYGWDKASNLLFVDQPTGTGFSYTSDKDDI-RHDEEGVSNDLY 205
E G F + LV N+Y W+K +N+LF+D P G GFSYT+ DI + ++D Y
Sbjct: 71 ELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSY 130
Query: 206 DFLQAFFAEHPQYAKNDFYITGESYAGHYIPAFASRVHKGNKEKQGIHINLKGFAIGNGL 265
FL +F P Y DFYI GESYAGHY+P + VH+ INLKGF +GNGL
Sbjct: 131 AFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPV----INLKGFMVGNGL 186
Query: 266 TDPAIQYKEYTEYALNMRLIKQSDYESINKLI---------PTCEHA--IKTCESDGGDA 314
D Y E+ N ++ Y + + P C+ A + T E D
Sbjct: 187 IDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAEQGNIDM 246
Query: 315 CSSSYAVCN 323
S VCN
Sbjct: 247 YSLYTPVCN 255
>pdb|1WHS|A Chain A, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 255
Score = 142 bits (359), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 121/249 (48%), Gaps = 19/249 (7%)
Query: 90 PGPSVQEFGHHAGYYTLPHSQSARMFYFFFES-RNNKSDPVVIWLTGGPGCSS-ELALFY 147
PG +F ++GY T+ +FY E+ + + P+V+WL GGPGCSS
Sbjct: 10 PGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVAYGASE 69
Query: 148 ENGPFHI-ANNLSLVWNDYGWDKASNLLFVDQPTGTGFSYTSDKDDI-RHDEEGVSNDLY 205
E G F + LV N+Y W+K +N+LF+D P G GFSYT+ DI + ++D Y
Sbjct: 70 ELGAFRVKPRGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSY 129
Query: 206 DFLQAFFAEHPQYAKNDFYITGESYAGHYIPAFASRVHKGNKEKQGIHINLKGFAIGNGL 265
FL +F P Y DFYI GESYAGHY+P + VH+ INLKGF +GNGL
Sbjct: 130 AFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPV----INLKGFMVGNGL 185
Query: 266 TDPAIQYKEYTEYALNMRLIKQSDYESINKLI---------PTCEHA--IKTCESDGGDA 314
D Y E+ N ++ Y + + P C+ A + T E D
Sbjct: 186 IDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAEQGNIDM 245
Query: 315 CSSSYAVCN 323
S VCN
Sbjct: 246 YSLYTPVCN 254
>pdb|3SC2|A Chain A, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 259
Score = 142 bits (357), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 89/249 (35%), Positives = 121/249 (48%), Gaps = 19/249 (7%)
Query: 90 PGPSVQEFGHHAGYYTLPHSQSARMFYFFFES-RNNKSDPVVIWLTGGPGCSS-ELALFY 147
PG +F ++GY T+ +FY E+ + + P+V+WL GGPGCSS
Sbjct: 15 PGQPAVDFDMYSGYITVDEGAGRSLFYLLQEAPEDAQPAPLVLWLNGGPGCSSVAYGASE 74
Query: 148 ENGPFHI-ANNLSLVWNDYGWDKASNLLFVDQPTGTGFSYTSDKDDI-RHDEEGVSNDLY 205
E G F + LV N+Y W+K +N+LF+D P G GFSYT+ DI + ++D Y
Sbjct: 75 ELGAFRVKPAGAGLVLNEYRWNKVANVLFLDSPAGVGFSYTNTSSDIYTSGDNRTAHDSY 134
Query: 206 DFLQAFFAEHPQYAKNDFYITGESYAGHYIPAFASRVHKGNKEKQGIHINLKGFAIGNGL 265
FL +F P Y DFYI GESYAGHY+P + VH+ INLKGF +GNGL
Sbjct: 135 AFLAKWFERFPHYKYRDFYIAGESYAGHYVPELSQLVHRSKNPV----INLKGFMVGNGL 190
Query: 266 TDPAIQYKEYTEYALNMRLIKQSDYESINKLI---------PTCEHA--IKTCESDGGDA 314
D Y E+ N ++ Y + + P C+ A + T E D
Sbjct: 191 IDDYHDYVGTFEFWWNHGIVSDDTYRRLKEACLHDSFIHPSPACDAATDVATAEQGNIDM 250
Query: 315 CSSSYAVCN 323
S VCN
Sbjct: 251 YSLYTPVCN 259
>pdb|4AZ0|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|A Chain A, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 300
Score = 128 bits (322), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 81/203 (39%), Positives = 117/203 (57%), Gaps = 17/203 (8%)
Query: 90 PGPSVQ-EFGHHAGYYTLPHSQSARMFYFFFESRNN-KSDPVVIWLTGGPGCSSELALFY 147
PG + Q F ++GY L S S + Y+F ES+ + ++ PVV+WL GGPGCSS L
Sbjct: 13 PGLAKQPSFRQYSGY--LKGSGSKHLHYWFVESQKDPENSPVVLWLNGGPGCSSLDGLLT 70
Query: 148 ENGPFHI-ANNLSLVWNDYGWDKASNLLFVDQPTGTGFSYTSDKDDIRHDEEGVSNDLYD 206
E+GPF + + ++L +N Y W+ +N+L+++ P G GFSY+ DK +D E V+ ++
Sbjct: 71 EHGPFLVQPDGVTLEYNPYSWNLIANVLYLESPAGVGFSYSDDKFYATNDTE-VAQSNFE 129
Query: 207 FLQAFFAEHPQYAKNDFYITGESYAGHYIPAFASRVHKGNKEKQGIHINLKGFAIGNGLT 266
LQ FF P+Y N ++TGESYAG YIP A V Q +NL+G A+GNGL+
Sbjct: 130 ALQDFFRLFPEYKNNKLFLTGESYAGIYIPTLAVLV------MQDPSMNLQGLAVGNGLS 183
Query: 267 -----DPAIQYKEYTEYALNMRL 284
D ++ Y Y L RL
Sbjct: 184 SYEQNDNSLVYFAYYHGLLGNRL 206
>pdb|1GXS|A Chain A, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|C Chain C, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 270
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 130/269 (48%), Gaps = 22/269 (8%)
Query: 78 VEKQLSLNPLGDPG-PSVQEFGHHAGYYTLPHSQSARMFYFFFESRNNKSDP--VVIWLT 134
+++Q LG PG P+ FG + GY T+ + ++Y+F E+ +V+WL
Sbjct: 2 LQQQEDDRILGLPGQPNGVAFGMYGGYVTIDDNNGRALYYWFQEADTADPAAAPLVLWLN 61
Query: 135 GGPGCSS-ELALFYENGPFHI-ANNLSLVWNDYGWDKASNLLFVDQPTGTGFSYTSDKDD 192
GGPGCSS L E G F + N SL+ N+Y W+KA+N+LF + P G GFSY++ D
Sbjct: 62 GGPGCSSIGLGAMQELGAFRVHTNGESLLLNEYAWNKAANILFAESPAGVGFSYSNTSSD 121
Query: 193 IRHDEEGVSNDLYDFLQAFFAEHPQYAKNDFYITGESYAGHYIPAFASRVHKGNKEKQGI 252
+ ++ ++ D Y FL +F P Y +FYI GES GH+IP + V++
Sbjct: 122 LSMGDDKMAQDTYTFLVKWFERFPHYNYREFYIAGES--GHFIPQLSQVVYR--NRNNSP 177
Query: 253 HINLKGFAIGNGLTDPAIQYKEYTEYALNMRLIKQSDYESINKLIPTCEHAIKTCESDGG 312
IN +G + +GLT+ E + LI +S K+ P T E
Sbjct: 178 FINFQGLLVSSGLTNDHEDMIGMFESWWHHGLISDETRDSGLKVCPGTSFMHPTPE---- 233
Query: 313 DACSSSYAVCNSIFNKILGIAGDVNYYDI 341
C ++NK L G++N Y I
Sbjct: 234 ---------CTEVWNKALAEQGNINPYTI 253
>pdb|4AZ0|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 8a.
pdb|4AZ3|B Chain B, Crystal Structure Of Cathepsin A, Complexed With 15a
Length = 155
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 71/157 (45%), Gaps = 26/157 (16%)
Query: 350 CYDFSNMERFLNEKSVREALGVGD--IDFVSCSSTV-------YEAMLMDWMRNFEVGIP 400
C + + +LN VR+AL + + + C+ V Y +M +++
Sbjct: 5 CTNTTAASTYLNNPYVRKALNIPEQLPQWDMCNFLVNLQYRRLYRSMNSQYLK------- 57
Query: 401 TLLEDGIRVLIYAGEYDLICNWLGNSKWVHAMEWSGQKDFGAAATVPFKVDGAETGQ--- 457
L ++L+Y G+ D+ CN++G+ +V ++ + P+ V ++G+
Sbjct: 58 LLSSQKYQILLYNGDVDMACNFMGDEWFVDSLNQKME-----VQRRPWLVKYGDSGEQIA 112
Query: 458 --IKSHGPLTFLKVHDAGHMVPMDQPKASLQMLQSWM 492
+K + FL + AGHMVP D+P A+ M ++
Sbjct: 113 GFVKEFSHIAFLTIKGAGHMVPTDKPLAAFTMFSRFL 149
>pdb|1GXS|B Chain B, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
pdb|1GXS|D Chain D, Crystal Structure Of Hydroxynitrile Lyase From Sorghum
Bicolor In Complex With Inhibitor Benzoic Acid: A Novel
Cyanogenic Enzyme
Length = 158
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 35/156 (22%), Positives = 77/156 (49%), Gaps = 15/156 (9%)
Query: 348 DLCYDFSNMERFLNEKSVREAL-----GVGDIDFVSCSSTVYEAMLMDWMRNFEVGIPT- 401
D C F+++ +LN V+ AL G+ + + CS+T+++ W + + +P
Sbjct: 5 DPCAVFNSIN-YLNLPEVQTALHANVSGIVEYPWTVCSNTIFD----QWGQAADDLLPVY 59
Query: 402 --LLEDGIRVLIYAGEYDLICNWLGNSKWVHAMEWSGQKDFGAAATVPFKVDGAETGQIK 459
L++ G+RV +Y+G+ D + + + A+E + + P + + G
Sbjct: 60 RELIQAGLRVWVYSGDTDSVVPVSSTRRSLAALELPVKTSWYPWYMAPTEREVG--GWSV 117
Query: 460 SHGPLTFLKVHDAGHMVPMDQPKASLQMLQSWMQGK 495
+ LT++ V AGH+VP+ +P + + + +++G+
Sbjct: 118 QYEGLTYVTVRGAGHLVPVHRPAQAFLLFKQFLKGE 153
>pdb|3SC2|B Chain B, Refined Atomic Model Of Wheat Serine Carboxypeptidase Ii
At 2.2- Angstroms Resolution
Length = 152
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 359 FLNEKSVREAL-----GVGDIDFVSCSSTVYEAMLMDWMRNFEVGIPTLLEDGIRVLIYA 413
+ N + V+ AL G + + +CS T+ D R+ L+ G+R+ +++
Sbjct: 13 YYNRRDVQMALHANVTGAMNYTWATCSDTI-NTHWHDAPRSMLPIYRELIAAGLRIWVFS 71
Query: 414 GEYDLICNWLGNSKWVHAMEWSGQKDFGAAATVPFKVDGAETGQIKSHGPLTFLKVHDAG 473
G+ D + + A+ + P+ D G + + LT + V AG
Sbjct: 72 GDTDAVVPLTATRYSIGALGLPTTTSW-----YPWYDDQEVGGWSQVYKGLTLVSVRGAG 126
Query: 474 HMVPMDQPKASLQMLQSWMQGK 495
H VP+ +P+ +L + Q ++QGK
Sbjct: 127 HEVPLHRPRQALVLFQYFLQGK 148
>pdb|1WHS|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 359 FLNEKSVREAL-----GVGDIDFVSCSSTVYEAMLMDWMRNFEVGIPTLLEDGIRVLIYA 413
+ N + V+ AL G + + +CS T+ D R+ L+ G+R+ +++
Sbjct: 13 YYNRRDVQMALHANVTGAMNYTWATCSDTI-NTHWHDAPRSMLPIYRELIAAGLRIWVFS 71
Query: 414 GEYDLICNWLGNSKWVHAMEWSGQKDFGAAATVPFKVDGAETGQIKSHGPLTFLKVHDAG 473
G+ D + + A+ + P+ D G + + LT + V AG
Sbjct: 72 GDTDAVVPLTATRYSIGALGLPTTTSW-----YPWYDDQEVGGWSQVYKGLTLVSVRGAG 126
Query: 474 HMVPMDQPKASLQMLQSWMQGK 495
H VP+ +P+ +L + Q ++QGK
Sbjct: 127 HEVPLHRPRQALVLFQYFLQGK 148
>pdb|1WHT|B Chain B, Structure Of The Complex Of L-Benzylsuccinate With Wheat
Serine Carboxypeptidase Ii At 2.0 Angstroms Resolution
Length = 153
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 359 FLNEKSVREAL-----GVGDIDFVSCSSTVYEAMLMDWMRNFEVGIPTLLEDGIRVLIYA 413
+ N + V+ AL G + + +CS T+ D R+ L+ G+R+ +++
Sbjct: 13 YYNRRDVQMALHANVTGAMNYTWATCSDTI-NTHWHDAPRSMLPIYRELIAAGLRIWVFS 71
Query: 414 GEYDLICNWLGNSKWVHAMEWSGQKDFGAAATVPFKVDGAETGQIKSHGPLTFLKVHDAG 473
G+ D + + A+ + P+ D G + + LT + V AG
Sbjct: 72 GDTDAVVPLTATRYSIGALGLPTTTSW-----YPWYDDQEVGGWSQVYKGLTLVSVRGAG 126
Query: 474 HMVPMDQPKASLQMLQSWMQGK 495
H VP+ +P+ +L + Q ++QGK
Sbjct: 127 HEVPLHRPRQALVLFQYFLQGK 148
>pdb|1BCR|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor, Antipain,
And Arginine At Room Temperature
pdb|1BCS|B Chain B, Complex Of The Wheat Serine Carboxypeptidase, Cpdw-Ii,
With The Microbial Peptide Aldehyde Inhibitor,
Chymostatin, And Arginine At 100 Degrees Kelvin
Length = 160
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 33/142 (23%), Positives = 63/142 (44%), Gaps = 11/142 (7%)
Query: 359 FLNEKSVREAL-----GVGDIDFVSCSSTVYEAMLMDWMRNFEVGIPTLLEDGIRVLIYA 413
+ N + V+ AL G + + +CS T+ D R+ L+ G+R+ +++
Sbjct: 15 YYNRRDVQMALHANVTGAMNYTWATCSDTI-NTHWHDAPRSMLPIYRELIAAGLRIWVFS 73
Query: 414 GEYDLICNWLGNSKWVHAMEWSGQKDFGAAATVPFKVDGAETGQIKSHGPLTFLKVHDAG 473
G+ D + + A+ + P+ D G + + LT + V AG
Sbjct: 74 GDTDAVVPLTATRYSIGALGLPTTTSW-----YPWYDDQEVGGWSQVYKGLTLVSVRGAG 128
Query: 474 HMVPMDQPKASLQMLQSWMQGK 495
H VP+ +P+ +L + Q ++QGK
Sbjct: 129 HEVPLHRPRQALVLFQYFLQGK 150
>pdb|1CPX|A Chain A, Beta Form Of Carboxypeptidase A (Residues 3-307) From
Bovine Pancreas In An Orthorhombic Crystal Form With Two
Zinc Ions In The Active Site.
pdb|1F57|A Chain A, Carboxypeptidase A Complex With D-Cysteine At 1.75 A
pdb|1M4L|A Chain A, Structure Of Native Carboxypeptidase A At 1.25 Resolution
pdb|1ARL|A Chain A, Carboxypeptidase A With Zn Removed
pdb|2RFH|A Chain A, Crystal Structure Analysis Of
Cpa-2-Benzyl-3-Nitropropanoic Acid Complex
Length = 307
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 202 NDLYDFLQAFFAEHPQYAKNDFYITGESYAGHYIPAFASRVHKGNKEKQGIHINL 256
+++YDF+ AEHPQ G SY G P + + G + I I+L
Sbjct: 16 DEIYDFMDLLVAEHPQLVSK--LQIGRSYEGR--PIYVLKFSTGGSNRPAIWIDL 66
>pdb|3FX6|A Chain A, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|C Chain C, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FX6|E Chain E, X-Ray Crystallographic Studies On The Complex Of
Carboxypeptidase A With The Inhibitor Using Alpha-Nitro
Ketone As The Zinc-Binding Group
pdb|3FVL|A Chain A, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|C Chain C, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
pdb|3FVL|E Chain E, Crystallogic Studies On The Complex Of Carboxypeptidase A
With Inhibitors Using Alpha-Hydroxy Ketone As
Zinc-Binding Group
Length = 307
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 202 NDLYDFLQAFFAEHPQYAKNDFYITGESYAGHYIPAFASRVHKGNKEKQGIHINL 256
+++YDF+ AEHPQ G SY G P + + G + I I+L
Sbjct: 16 DEIYDFMDLLVAEHPQLVSK--LQIGRSYEGR--PIYVLKFSTGGSNRPAIWIDL 66
>pdb|1HDQ|A Chain A, Crystal Structure Of Bovine Pancreatic Carboxypeptidase A
Complexed With D-N-Hydroxyaminocarbonyl Phenylalanine At
2.3 A
pdb|2CTB|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
pdb|2CTC|A Chain A, The High Resolution Crystal Structure Of The Complex
Between Carboxypeptidase A And L-Phenyl Lactate
Length = 307
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 202 NDLYDFLQAFFAEHPQYAKNDFYITGESYAGHYIPAFASRVHKGNKEKQGIHINL 256
+++YDF+ AEHPQ G SY G P + + G + I I+L
Sbjct: 16 DEIYDFMDLLVAEHPQLVSK--LQIGRSYEGR--PIYVLKFSTGGSNRPAIWIDL 66
>pdb|1PYT|B Chain B, Ternary Complex Of Procarboxypeptidase A, Proproteinase E,
And Chymotrypsinogen C
pdb|3KGQ|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
Length = 309
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 202 NDLYDFLQAFFAEHPQYAKNDFYITGESYAGHYIPAFASRVHKGNKEKQGIHINL 256
+++YDF+ AEHPQ G SY G P + + G + I I+L
Sbjct: 16 DEIYDFMDLLVAEHPQLVSK--LQIGRSYEGR--PIYVLKFSTGGSNRPAIWIDL 66
>pdb|1EE3|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 2 Mm Chloride In Monoclinic
Crystal Form
pdb|1ELL|P Chain P, Cadmium-Substituted Bovine Pancreatic Carboxypeptidase A
(Alfa-Form) At Ph 7.5 And 0.25 M Chloride In Monoclinic
Crystal Form.
pdb|1ELM|P Chain P, Cadmium-Substituted Bovine Pacreatic Carboxypeptidase A
(Alfa-Form) At Ph 5.5 And 2 Mm Chloride In Monoclinic
Crystal Form.
pdb|1ZLH|A Chain A, Crystal Structure Of The Tick Carboxypeptidase Inhibitor
In Complex With Bovine Carboxypeptidase A
pdb|2ABZ|A Chain A, Crystal Structure Of C19aC43A MUTANT OF LEECH
Carboxypeptidase Inhibitor In Complex With Bovine
Carboxypeptidase A
pdb|2ABZ|B Chain B, Crystal Structure Of C19aC43A MUTANT OF LEECH
Carboxypeptidase Inhibitor In Complex With Bovine
Carboxypeptidase A
pdb|1ARM|A Chain A, Carboxypeptidase A With Zn Replaced By Hg
pdb|1YME|A Chain A, Structure Of Carboxypeptidase
pdb|3I1U|A Chain A, Carboxypeptidase A Inhibited By A Thiirane Mechanism-Based
Inactivator
pdb|3HLP|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
pdb|3HLP|B Chain B, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
pdb|3HUV|A Chain A, Carboxypeptidase A Liganded To An Organic Small-Molecule:
Conformational Changes
Length = 309
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 202 NDLYDFLQAFFAEHPQYAKNDFYITGESYAGHYIPAFASRVHKGNKEKQGIHINL 256
+++YDF+ AEHPQ G SY G P + + G + I I+L
Sbjct: 16 DEIYDFMDLLVAEHPQLVSK--LQIGRSYEGR--PIYVLKFSTGGSNRPAIWIDL 66
>pdb|1CBX|A Chain A, Crystal Structure Of The Complex Between Carboxypeptidase
A And The Biproduct Analog Inhibitor L-Benzylsuccinate
At 2.0 Angstroms Resolution
pdb|1CPS|A Chain A, Structural Comparison Of Sulfodiimine And Sulfonamide
Inhibitors In Their Complexes With Zinc Enzymes
Length = 307
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Query: 202 NDLYDFLQAFFAEHPQYAKNDFYITGESYAGHYIPAFASRVHKGNKEKQGIHINL 256
+++YDF+ AEHPQ G SY G P + + G + I I+L
Sbjct: 16 DEIYDFMDLLVAEHPQLVSK--LQIGRSYEGR--PIYVLKFSTGGSNRPAIWIDL 66
>pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
pdb|2D4W|B Chain B, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp.
Nt3060
Length = 504
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 406 GIRVLIYAGEYDLICNWLGNSKWVHAMEWSGQKD 439
GI V + GE D+I NW + +W +ME SG+++
Sbjct: 449 GIAVGFWKGEQDVIDNWAEDKRWSPSME-SGERE 481
>pdb|1U2Z|A Chain A, Crystal Structure Of Histone K79 Methyltransferase Dot1p
From Yeast
pdb|1U2Z|B Chain B, Crystal Structure Of Histone K79 Methyltransferase Dot1p
From Yeast
pdb|1U2Z|C Chain C, Crystal Structure Of Histone K79 Methyltransferase Dot1p
From Yeast
Length = 433
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 204 LYDFLQAFFAE--HPQYAKNDFYITGESYA-GHYIPAFASRVHKGNKEKQGIHINLKGFA 260
++DFL + HPQ K Y +Y G +P F S V++ + K+G G
Sbjct: 193 IHDFLHIVYTRSIHPQANKLKHYKAFSNYVYGELLPNFLSDVYQQCQLKKGDTFMDLGSG 252
Query: 261 IGNGLTDPAIQ 271
+GN + A++
Sbjct: 253 VGNCVVQAALE 263
>pdb|1S7J|A Chain A, Crystal Structure Of Phenazine Biosynthesis Protein Phzf
Family (Enterococcus Faecalis)
pdb|1S7J|B Chain B, Crystal Structure Of Phenazine Biosynthesis Protein Phzf
Family (Enterococcus Faecalis)
Length = 262
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 6/59 (10%)
Query: 229 SYAGHYIPAFASRVHKGNK------EKQGIHINLKGFAIGNGLTDPAIQYKEYTEYALN 281
SY + + AFA V KGN EK ++ AI N L++ A KE YAL
Sbjct: 2 SYPYYIVDAFAEEVFKGNPAAVYVLEKWLPEAVMQNIAIENNLSETAFTVKEGQSYALR 60
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,829,747
Number of Sequences: 62578
Number of extensions: 759772
Number of successful extensions: 1624
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1559
Number of HSP's gapped (non-prelim): 29
length of query: 508
length of database: 14,973,337
effective HSP length: 103
effective length of query: 405
effective length of database: 8,527,803
effective search space: 3453760215
effective search space used: 3453760215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)