BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010509
(508 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 101/210 (48%), Gaps = 24/210 (11%)
Query: 66 ILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGK--PFSNQ----- 118
ILKGI+ VK GE ++++G S GK ++N+
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 119 -MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKN 177
R GFV Q L P LT E V +L++ +KE + E +++ELGL
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALEN-VIVPMLKMGKP--KKEAKERGEYLLSELGL----- 130
Query: 178 SLIGGPLTRG---VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA 234
G L+R +SGGE++RV+I + + P LLF DEPT LDS ++++ I LK+
Sbjct: 131 ---GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKIN 187
Query: 235 NGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
GG +IVM H+ L + H+ L + +G
Sbjct: 188 EGGTSIVMVTHERE--LAELTHRTLEMKDG 215
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 100/212 (47%), Gaps = 14/212 (6%)
Query: 66 ILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFS------NQM 119
+LKGI ++ GE++ ++GPS +G N++
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 120 TRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSL 179
G V Q L P++TV + A +++ EK + K E ++ ++GL + ++
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPREKAEAKAME-LLDKVGLKDKAHA- 155
Query: 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRT 239
+SGG+ +RV+I + + + P ++ DEPTS LD + ++LS++ +LAN G T
Sbjct: 156 ----YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMT 211
Query: 240 IVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271
+V+ H+ + +VL + GY + G+
Sbjct: 212 MVVVTHE-MGFAREVGDRVLFMDGGYIIEEGK 242
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 100/212 (47%), Gaps = 14/212 (6%)
Query: 66 ILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFS------NQM 119
+LKGI ++ GE++ ++GPS +G N++
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 120 TRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSL 179
G V Q L P++TV + A +++ EK + K E ++ ++GL + ++
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITL-APMKVRKWPREKAEAKAME-LLDKVGLKDKAHA- 134
Query: 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRT 239
+SGG+ +RV+I + + + P ++ DEPTS LD + ++LS++ +LAN G T
Sbjct: 135 ----YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMT 190
Query: 240 IVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271
+V+ H+ + +VL + GY + G+
Sbjct: 191 MVVVTHE-MGFAREVGDRVLFMDGGYIIEEGK 221
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 18/199 (9%)
Query: 62 EEKAILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFSNQMTR 121
+ + IL+ I+ +P ++A GPS T +G+P N
Sbjct: 13 DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLE 72
Query: 122 N----TGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKN 177
N GFV+Q+ + T+ E + + L +T+++ + + + +
Sbjct: 73 NWRSQIGFVSQDSAIMAG-TIRENLTYG----LEGDYTDEDLWQVLDLAFARSFVENMPD 127
Query: 178 SLIGGPLTRGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDS---TIAQQILSILLK 232
L RGV SGG+R+R++I + L NP +L LDE T+ LDS ++ Q+ L L+K
Sbjct: 128 QLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK 187
Query: 233 LANGGRTIVMTIHQPSNML 251
GRT ++ H+ S ++
Sbjct: 188 ----GRTTLVIAHRLSTIV 202
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 54/208 (25%), Positives = 91/208 (43%), Gaps = 14/208 (6%)
Query: 67 LKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFSN--QMTRNTG 124
L I +K GE +A+LGPS ++ K + RN G
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVG 78
Query: 125 FVTQEDVLSPYLTVTETMVFT-ALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGP 183
V Q L P++TV + + F L + P +K+ + A+ + + L+ L
Sbjct: 79 LVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQL---- 134
Query: 184 LTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVM 242
SGG+++RV+I + ++ P +L LDEP S LD+ + ++ + L +L G T V
Sbjct: 135 -----SGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVY 189
Query: 243 TIHQPSNMLYYMFHKVLLLSEGYPLYSG 270
H + L M ++ ++ EG L G
Sbjct: 190 VTHDQAEAL-AMADRIAVIREGEILQVG 216
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/163 (29%), Positives = 82/163 (50%), Gaps = 12/163 (7%)
Query: 111 NGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI-KCAEAVMTE 169
NGK R G V Q L P LT E + F L N KE+I K E V
Sbjct: 72 NGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFP----LTNMKMSKEEIRKRVEEVAKI 127
Query: 170 LGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSI 229
L + N R +SGG+++RV++ + ++ +PSLL LDEP S LD+ + ++
Sbjct: 128 LDIHHVLNHF-----PRELSGGQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL 182
Query: 230 LLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271
+ ++ + G T+++ H P++ ++ + +V +L +G + G+
Sbjct: 183 VKEVQSRLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGK 224
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 17/199 (8%)
Query: 60 KIEEKAILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFS--- 116
K + IL I +K GE++ ++G S +G +
Sbjct: 14 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 73
Query: 117 -NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEK----EKIKCAEAVMTELG 171
N + R G V Q++VL + +++ L P EK K+ A ++EL
Sbjct: 74 PNWLRRQVGVVLQDNVL-----LNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL- 127
Query: 172 LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
E N+++G G+SGG+R+R++I + ++ NP +L DE TS LD I+ +
Sbjct: 128 -REGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 185
Query: 232 KLANGGRTIVMTIHQPSNM 250
K+ GRT+++ H+ S +
Sbjct: 186 KICK-GRTVIIIAHRLSTV 203
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 110/235 (46%), Gaps = 30/235 (12%)
Query: 28 DVFTRAKHPV-----TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAM 82
D F+++ H L+F++I + Y S K+++ ILKG+ VK G+ +A+
Sbjct: 372 DSFSKSGHKPDNIQGNLEFKNIHFS-------YPSRKEVQ---ILKGLNLKVKSGQTVAL 421
Query: 83 LGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFSNQMTRN----TGFVTQEDVLSPYLTV 138
+G S + +G+ R G V+QE VL T+
Sbjct: 422 VGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA-TTI 480
Query: 139 TETMVFTALLQLPNSFTEKEK-IKCAEAVMTELGLSECKNSLIGGPLTRG--VSGGERKR 195
E + + + + E EK +K A A + L ++L+G RG +SGG+++R
Sbjct: 481 AENIRYG---REDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVG---ERGAQLSGGQKQR 534
Query: 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNM 250
++I + ++ NP +L LDE TS LD T ++ ++ L A GRT ++ H+ S +
Sbjct: 535 IAIARALVRNPKILLLDEATSALD-TESEAVVQAALDKAREGRTTIVIAHRLSTV 588
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 17/194 (8%)
Query: 66 ILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFSN---QMTR- 121
+L+G++ VK G+ LA++G S +GK Q R
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107
Query: 122 NTGFVTQEDVLSPYLTVTETMVFTALLQLPNS--FTEKEKIKCA-EAVMTEL--GLSECK 176
G V+QE +L ++ E + + NS + +E ++ A EA + + L +
Sbjct: 1108 QLGIVSQEPILFD-CSIAENIAYG-----DNSRVVSYEEIVRAAKEANIHQFIDSLPDKY 1161
Query: 177 NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236
N+ +G T+ +SGG+++R++I + ++ P +L LDE TS LD T +++++ L A
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALD-TESEKVVQEALDKARE 1219
Query: 237 GRTIVMTIHQPSNM 250
GRT ++ H+ S +
Sbjct: 1220 GRTCIVIAHRLSTI 1233
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 110/235 (46%), Gaps = 30/235 (12%)
Query: 28 DVFTRAKHPV-----TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAM 82
D F+++ H L+F++I + Y S K+++ ILKG+ VK G+ +A+
Sbjct: 372 DSFSKSGHKPDNIQGNLEFKNIHFS-------YPSRKEVQ---ILKGLNLKVKSGQTVAL 421
Query: 83 LGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFSNQMTRN----TGFVTQEDVLSPYLTV 138
+G S + +G+ R G V+QE VL T+
Sbjct: 422 VGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA-TTI 480
Query: 139 TETMVFTALLQLPNSFTEKEK-IKCAEAVMTELGLSECKNSLIGGPLTRG--VSGGERKR 195
E + + + + E EK +K A A + L ++L+G RG +SGG+++R
Sbjct: 481 AENIRYG---REDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVG---ERGAQLSGGQKQR 534
Query: 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNM 250
++I + ++ NP +L LDE TS LD T ++ ++ L A GRT ++ H+ S +
Sbjct: 535 IAIARALVRNPKILLLDEATSALD-TESEAVVQAALDKAREGRTTIVIAHRLSTV 588
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 17/194 (8%)
Query: 66 ILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFSN---QMTR- 121
+L+G++ VK G+ LA++G S +GK Q R
Sbjct: 1048 VLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107
Query: 122 NTGFVTQEDVLSPYLTVTETMVFTALLQLPNS--FTEKEKIKCA-EAVMTEL--GLSECK 176
G V+QE +L ++ E + + NS + +E ++ A EA + + L +
Sbjct: 1108 QLGIVSQEPILFD-CSIAENIAYG-----DNSRVVSYEEIVRAAKEANIHQFIDSLPDKY 1161
Query: 177 NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236
N+ +G T+ +SGG+++R++I + ++ P +L LDE TS LD T +++++ L A
Sbjct: 1162 NTRVGDKGTQ-LSGGQKQRIAIARALVRQPHILLLDEATSALD-TESEKVVQEALDKARE 1219
Query: 237 GRTIVMTIHQPSNM 250
GRT ++ H+ S +
Sbjct: 1220 GRTCIVIAHRLSTI 1233
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 17/199 (8%)
Query: 60 KIEEKAILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFS--- 116
K + IL I +K GE++ ++G S +G +
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 71
Query: 117 -NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEK----EKIKCAEAVMTELG 171
N + R G V Q++VL + +++ L P EK K+ A ++EL
Sbjct: 72 PNWLRRQVGVVLQDNVL-----LNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL- 125
Query: 172 LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
E N+++G G+SGG+R+R++I + ++ NP +L DE TS LD I+ +
Sbjct: 126 -REGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 183
Query: 232 KLANGGRTIVMTIHQPSNM 250
K+ GRT+++ H+ S +
Sbjct: 184 KICK-GRTVIIIAHRLSTV 201
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 89/199 (44%), Gaps = 17/199 (8%)
Query: 60 KIEEKAILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFS--- 116
K + IL I +K GE++ ++G S +G +
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 77
Query: 117 -NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEK----EKIKCAEAVMTELG 171
N + R G V Q++VL + +++ L P EK K+ A ++EL
Sbjct: 78 PNWLRRQVGVVLQDNVL-----LNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL- 131
Query: 172 LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
E N+++G G+SGG+R+R++I + ++ NP +L DE TS LD I+ +
Sbjct: 132 -REGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 189
Query: 232 KLANGGRTIVMTIHQPSNM 250
K+ GRT+++ H+ S +
Sbjct: 190 KICK-GRTVIIIAHRLSTV 207
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247
+SGG+++RVSI + + + P +L DEPTS LD + ++L I+ +LA G+T+V+ H+
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEM 213
Query: 248 SNMLYYMFHKVLLLSEG 264
+ H V+ L +G
Sbjct: 214 GFARHVSSH-VIFLHQG 229
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 17/199 (8%)
Query: 60 KIEEKAILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFS--- 116
K + IL I +K GE++ ++G + +G +
Sbjct: 14 KPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 73
Query: 117 -NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEK----EKIKCAEAVMTELG 171
N + R G V Q++VL + +++ L P EK K+ A ++EL
Sbjct: 74 PNWLRRQVGVVLQDNVL-----LNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL- 127
Query: 172 LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
E N+++G G+SGG+R+R++I + ++ NP +L DE TS LD I+ +
Sbjct: 128 -REGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 185
Query: 232 KLANGGRTIVMTIHQPSNM 250
K+ GRT+++ H+ S +
Sbjct: 186 KICK-GRTVIIIAHRLSTV 203
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 10/145 (6%)
Query: 121 RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLI 180
R G V Q L P+L+V E M F L +++ V+ L + K
Sbjct: 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK---- 130
Query: 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRT 239
+ +SGG+R+RV+IG+ ++ PS+ LDEP S LD+ + Q+ + +L GRT
Sbjct: 131 ----PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 240 IVMTIHQPSNMLYYMFHKVLLLSEG 264
++ H + + K+++L G
Sbjct: 187 MIYVTHDQVEAM-TLADKIVVLDAG 210
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 10/145 (6%)
Query: 121 RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLI 180
R G V Q L P+L+V E M F L +++ V+ L + K
Sbjct: 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK---- 130
Query: 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRT 239
+ +SGG+R+RV+IG+ ++ PS+ LDEP S LD+ + Q+ + +L GRT
Sbjct: 131 ----PKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 240 IVMTIHQPSNMLYYMFHKVLLLSEG 264
++ H + + K+++L G
Sbjct: 187 MIYVTHDQVEAM-TLADKIVVLDAG 210
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 85/179 (47%), Gaps = 14/179 (7%)
Query: 121 RNTGFVTQEDVLSPYLTVTETMVFT-ALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSL 179
R+ V Q L P++TV + + F L ++P ++ + AE LGL+E N
Sbjct: 81 RDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAEL----LGLTELLNRK 136
Query: 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN--GG 237
R +SGG+R+RV++G+ I+ P + +DEP S LD+ + ++ + L KL G
Sbjct: 137 -----PRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGV 191
Query: 238 RTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFASIGYCPSVPTNPSDFL 296
TI +T Q M M ++ +++ G G + A+ + + P +FL
Sbjct: 192 TTIYVTHDQVEAM--TMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIGSPPMNFL 248
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 17/199 (8%)
Query: 60 KIEEKAILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFS--- 116
K + IL I +K GE++ ++G S +G +
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 77
Query: 117 -NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEK----EKIKCAEAVMTELG 171
N + R G V Q++VL + +++ L P EK K+ A ++EL
Sbjct: 78 PNWLRRQVGVVLQDNVL-----LNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL- 131
Query: 172 LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
E N+++G G+SGG+R+R++I + ++ NP +L D+ TS LD I+ +
Sbjct: 132 -REGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEHVIMRNMH 189
Query: 232 KLANGGRTIVMTIHQPSNM 250
K+ GRT+++ H+ S +
Sbjct: 190 KICK-GRTVIIIAHRLSTV 207
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/195 (26%), Positives = 93/195 (47%), Gaps = 11/195 (5%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNG---KPFSNQM 119
E ILKG++ V+PG+ LA++GPS +G K + +
Sbjct: 1091 EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEH 1150
Query: 120 TRNT-GFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNS 178
TR+ V+QE L ++ E +++ P+S T + + A ++E
Sbjct: 1151 TRSQIAIVSQEPTLFD-CSIAENIIYGLD---PSSVTMAQVEEAARLANIHNFIAELPEG 1206
Query: 179 LIGGPLTRG--VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236
RG +SGG+++R++I + ++ NP +L LDE TS LD T +++++ L A
Sbjct: 1207 FETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD-TESEKVVQEALDRARE 1265
Query: 237 GRTIVMTIHQPSNML 251
GRT ++ H+ + ++
Sbjct: 1266 GRTCIVIAHRLNTVM 1280
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 48/74 (64%), Gaps = 2/74 (2%)
Query: 177 NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236
N+L+G T+ +SGG+++R++I + ++ NP +L LDE TS LD+ ++ I+ L A
Sbjct: 545 NTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAE-SEGIVQQALDKAAK 602
Query: 237 GRTIVMTIHQPSNM 250
GRT ++ H+ S +
Sbjct: 603 GRTTIIIAHRLSTI 616
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 81/163 (49%), Gaps = 12/163 (7%)
Query: 111 NGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI-KCAEAVMTE 169
NGK R G V Q L P LT E + F L N KE+I K E V
Sbjct: 72 NGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFP----LTNMKMSKEEIRKRVEEVAKI 127
Query: 170 LGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSI 229
L + N R +SG +++RV++ + ++ +PSLL LDEP S LD+ + ++
Sbjct: 128 LDIHHVLNHF-----PRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARAL 182
Query: 230 LLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271
+ ++ + G T+++ H P++ ++ + +V +L +G + G+
Sbjct: 183 VKEVQSRLGVTLLVVSHDPAD-IFAIADRVGVLVKGKLVQVGK 224
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/219 (27%), Positives = 102/219 (46%), Gaps = 25/219 (11%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFSNQMT-- 120
E ILK I ++ GE +A +G S +G + +T
Sbjct: 353 EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGS 412
Query: 121 -RN-TGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEK--EKIKCAEAVMTELGLSECK 176
RN G V Q+++L ++T+ LL P + E+ E K A A + L +
Sbjct: 413 LRNQIGLVQQDNIL-----FSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGY 467
Query: 177 NSLIGGPLTRGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLD---STIAQQILSILL 231
++ +G RGV SGG+++R+SI + L NP +L LDE TS LD +I Q+ L +L
Sbjct: 468 DTEVG---ERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS 524
Query: 232 KLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270
K RT ++ H+ S + + K++++ G+ + +G
Sbjct: 525 K----DRTTLIVAHRLSTITHA--DKIVVIENGHIVETG 557
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 10/145 (6%)
Query: 121 RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLI 180
R G V Q L P+L+V E M F L +++ V+ L + K
Sbjct: 75 RGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRK---- 130
Query: 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRT 239
+ +SGG+R+RV+IG+ ++ PS+ LD+P S LD+ + Q+ + +L GRT
Sbjct: 131 ----PKALSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAALRVQMRIEISRLHKRLGRT 186
Query: 240 IVMTIHQPSNMLYYMFHKVLLLSEG 264
++ H + + K+++L G
Sbjct: 187 MIYVTHDQVEAM-TLADKIVVLDAG 210
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247
+SGGE++RV+I I+ P +L LDEP GLD +L I+ K G+T+++ H
Sbjct: 139 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 198
Query: 248 SNMLYYMFHKVLLLSEGYPLYSG 270
++ ++ +V++L +G ++ G
Sbjct: 199 ETVINHV-DRVVVLEKGKKVFDG 220
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 124 GFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGP 183
GFV Q+ L P LT E + + + + + +E+ K A + L ++E +
Sbjct: 86 GFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRA---LECLKMAELEERFANHK 142
Query: 184 LTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL-ANGGRTIVM 242
+ +SGG+++RV+I + + NP ++ D+PT LDS ++I+ +L KL G+T+V+
Sbjct: 143 PNQ-LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVV 201
Query: 243 TIHQ 246
H
Sbjct: 202 VTHD 205
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 5/124 (4%)
Query: 124 GFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGP 183
GFV Q+ L P LT E + + + + + +E+ K A + L E
Sbjct: 86 GFVFQQFNLIPLLTALENVELPLIFKYRGAXSGEERRKRALECLKXAELEE----RFANH 141
Query: 184 LTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL-ANGGRTIVM 242
+SGG+++RV+I + + NP ++ DEPT LDS ++I +L KL G+T+V+
Sbjct: 142 KPNQLSGGQQQRVAIARALANNPPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVV 201
Query: 243 TIHQ 246
H
Sbjct: 202 VTHD 205
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247
+SGGE++RV+I I+ P +L LDEP GLD +L I+ K G+T+++ H
Sbjct: 141 LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDI 200
Query: 248 SNMLYYMFHKVLLLSEGYPLYSG 270
++ ++ +V++L +G ++ G
Sbjct: 201 ETVINHV-DRVVVLEKGKKVFDG 222
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 66/124 (53%), Gaps = 5/124 (4%)
Query: 124 GFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGP 183
GFV Q+ L P LT E + + + + + +E+ K A + L ++E +
Sbjct: 86 GFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRA---LECLKMAELEERFANHK 142
Query: 184 LTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL-ANGGRTIVM 242
+ +SGG+++RV+I + + NP ++ D+PT LDS ++I+ +L KL G+T+V+
Sbjct: 143 PNQ-LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVV 201
Query: 243 TIHQ 246
H
Sbjct: 202 VTHD 205
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 30/231 (12%)
Query: 60 KIEEKAILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFS--- 116
K + IL I +K GE++ ++G S +G +
Sbjct: 12 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 71
Query: 117 -NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEK----EKIKCAEAVMTELG 171
N + R G V Q++VL + +++ L P EK K+ A ++EL
Sbjct: 72 PNWLRRQVGVVLQDNVL-----LNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL- 125
Query: 172 LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
E N+++G G+SGG+R+R++I + ++ NP +L DE TS LD I+ +
Sbjct: 126 -REGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 183
Query: 232 KLANGGRTIVM------TIHQPSNMLYYMFHKVL-------LLSEGYPLYS 269
K+ GRT+++ T+ ++ K++ LLSE LYS
Sbjct: 184 KICK-GRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 233
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 30/231 (12%)
Query: 60 KIEEKAILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFS--- 116
K + IL I +K GE++ ++G S +G +
Sbjct: 18 KPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALAD 77
Query: 117 -NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEK----EKIKCAEAVMTELG 171
N + R G V Q++VL + +++ L P EK K+ A ++EL
Sbjct: 78 PNWLRRQVGVVLQDNVL-----LNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISEL- 131
Query: 172 LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231
E N+++G G+SGG+R+R++I + ++ NP +L DE TS LD I+ +
Sbjct: 132 -REGYNTIVG-EQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMH 189
Query: 232 KLANGGRTIVM------TIHQPSNMLYYMFHKVL-------LLSEGYPLYS 269
K+ GRT+++ T+ ++ K++ LLSE LYS
Sbjct: 190 KICK-GRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 239
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 12/129 (9%)
Query: 121 RNTGFVTQEDVLSPYLTVTETMVFT-ALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSL 179
R+ V Q L P+ TV + + F L ++P +K + AE LGL+E N
Sbjct: 84 RDVAXVFQSYALYPHXTVYDNIAFPLKLRKVPKQEIDKRVREVAEX----LGLTELLNRK 139
Query: 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN--GG 237
R +SGG+R+RV++G+ I+ P + DEP S LD+ + + + L KL G
Sbjct: 140 -----PRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQLGV 194
Query: 238 RTIVMTIHQ 246
TI +T Q
Sbjct: 195 TTIYVTHDQ 203
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 91/221 (41%), Gaps = 12/221 (5%)
Query: 61 IEEKAILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXT--YNGKPF--- 115
+E+KAIL+G++ V PGE+ A++GP+ T + GK
Sbjct: 11 VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL 70
Query: 116 --SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKE---KIKCAEAVMTEL 170
++ Q V P V+ L S+ +E + + + ++
Sbjct: 71 SPEDRAGEGIFMAFQYPVEIP--GVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKI 128
Query: 171 GLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSIL 230
L + L+ + G SGGE+KR I Q ++ P L LDE SGLD + + +
Sbjct: 129 ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGV 188
Query: 231 LKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271
L +G R+ ++ H + Y V +L +G + SG+
Sbjct: 189 NSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 229
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 18/135 (13%)
Query: 124 GFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAE---AVMTELGLSECKNSLI 180
G V+QE +L ++ E + + A P+S T +E + AE AV + N+++
Sbjct: 421 GTVSQEPILFS-CSIAENIAYGA--DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 477
Query: 181 GGPLTRGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDST---IAQQILSILLKLAN 235
G +GV SGG+++R++I + +L NP +L LDE TS LD+ + Q+ L L+
Sbjct: 478 G---EKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--- 531
Query: 236 GGRTIVMTIHQPSNM 250
GRT+++ H+ S +
Sbjct: 532 -GRTVLVIAHRLSTI 545
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/221 (23%), Positives = 91/221 (41%), Gaps = 12/221 (5%)
Query: 61 IEEKAILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXT--YNGKPF--- 115
+E+KAIL+G++ V PGE+ A++GP+ T + GK
Sbjct: 30 VEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLAL 89
Query: 116 --SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKE---KIKCAEAVMTEL 170
++ Q V P V+ L S+ +E + + + ++
Sbjct: 90 SPEDRAGEGIFMAFQYPVEIP--GVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKI 147
Query: 171 GLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSIL 230
L + L+ + G SGGE+KR I Q ++ P L LDE SGLD + + +
Sbjct: 148 ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGV 207
Query: 231 LKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271
L +G R+ ++ H + Y V +L +G + SG+
Sbjct: 208 NSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGD 248
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 18/135 (13%)
Query: 124 GFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAE---AVMTELGLSECKNSLI 180
G V+QE +L ++ E + + A P+S T +E + AE AV + N+++
Sbjct: 452 GTVSQEPILFS-CSIAENIAYGA--DDPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVV 508
Query: 181 GGPLTRGV--SGGERKRVSIGQEILINPSLLFLDEPTSGLDST---IAQQILSILLKLAN 235
G +GV SGG+++R++I + +L NP +L LDE TS LD+ + Q+ L L+
Sbjct: 509 G---EKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD--- 562
Query: 236 GGRTIVMTIHQPSNM 250
GRT+++ H S +
Sbjct: 563 -GRTVLVIAHHLSTI 576
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 98/214 (45%), Gaps = 16/214 (7%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFSN 117
+K + +L I+ + PGE+L ++G S + +GK +
Sbjct: 11 SKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFS 70
Query: 118 QMT------RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELG 171
+ T R G++ QE VL P+LTV + + + E+++I EA++ G
Sbjct: 71 KNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRI---EAMLELTG 127
Query: 172 LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL-SIL 230
+SE + G +SGG+++R ++ + + +P L+ LDEP S LD + +QI ++
Sbjct: 128 ISE-----LAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMI 182
Query: 231 LKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
L G++ V H L Y ++ ++ +G
Sbjct: 183 AALRANGKSAVFVSHDREEALQYA-DRIAVMKQG 215
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 55/213 (25%), Positives = 96/213 (45%), Gaps = 19/213 (8%)
Query: 67 LKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFS------NQMT 120
LKGI +K GE+ A+LG + ++ KP ++
Sbjct: 24 LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLR 83
Query: 121 RNTGFVTQE-DVLSPYLTVTETMVFTAL-LQLPNSFTEKEKIKCAEAVMTELGLSECKNS 178
+ G V Q+ D +V + + F A+ ++LP E E K + + G+ K+
Sbjct: 84 ESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLP----EDEIRKRVDNALKRTGIEHLKDK 139
Query: 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-G 237
P T +S G++KRV+I +++ P +L LDEPT+GLD +I+ +L+++ G
Sbjct: 140 ----P-THCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELG 194
Query: 238 RTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270
TI++ H + Y V ++ EG + G
Sbjct: 195 ITIIIATHDIDIVPLYC-DNVFVMKEGRVILQG 226
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 87/207 (42%), Gaps = 13/207 (6%)
Query: 67 LKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFSN--QMTRNTG 124
L ++ V+ GE +LGP+ +GK ++ +
Sbjct: 16 LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIA 75
Query: 125 FVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPL 184
FV Q L P++ V + + F ++ KIK + V+ + ++ L PL
Sbjct: 76 FVYQNYSLFPHMNVKKNLEFGMRMK---------KIKDPKRVLDTARDLKIEHLLDRNPL 126
Query: 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTI 244
T +SGGE++RV++ + ++ NP +L LDEP S LD + +L L + V+ I
Sbjct: 127 T--LSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHI 184
Query: 245 HQPSNMLYYMFHKVLLLSEGYPLYSGE 271
M ++ ++ +G + G+
Sbjct: 185 THDQTEARIMADRIAVVMDGKLIQVGK 211
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 100/226 (44%), Gaps = 11/226 (4%)
Query: 21 DQLLEASDVFTRAKHPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEML 80
+++ E D+ P ++ ++ +I+ K ++ +KK K +LK IT +KPG+ +
Sbjct: 328 ERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKK---KPVLKDITFHIKPGQKV 384
Query: 81 AMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNG----KPFSNQMTRNTGFVTQEDVLSPYL 136
A++GP+ +G K + + + G V Q+ +L
Sbjct: 385 ALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST- 443
Query: 137 TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196
TV E + + E K+ ++ + L E +++ +S G+R+ +
Sbjct: 444 TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHL--PEGYETVLTDN-GEDLSQGQRQLL 500
Query: 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVM 242
+I + L NP +L LDE TS +D+ + I + + KL G +I++
Sbjct: 501 AITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIII 546
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 90/201 (44%), Gaps = 12/201 (5%)
Query: 67 LKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFSN--QMTRNTG 124
++G++ ++ GEM+ +LGPS GK ++ RN G
Sbjct: 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90
Query: 125 FVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPL 184
V Q L ++TV + + F L K+++ +A + EL L +
Sbjct: 91 LVFQNYALFQHMTVYDNVSFG----LREKRVPKDEM---DARVREL-LRFMRLESYANRF 142
Query: 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMT 243
+SGG+++RV++ + + P +L DEP + +D+ I +++ + + ++ + G T V
Sbjct: 143 PHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFV 202
Query: 244 IHQPSNMLYYMFHKVLLLSEG 264
H L + +VL+L EG
Sbjct: 203 THDQEEAL-EVADRVLVLHEG 222
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 98/218 (44%), Gaps = 16/218 (7%)
Query: 58 NKKIEEKAILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPF-- 115
K+I +K ILKGI+ ++ GE+ ++GP+ T GK
Sbjct: 22 RKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE 81
Query: 116 -SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE 174
+++ + ++ +E + E + F A +S +E ++ A + GL E
Sbjct: 82 EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA---GLGE 138
Query: 175 CKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA 234
+ S G +++ I + +++NP L LDEPTSGLD A+++ IL + +
Sbjct: 139 KIKDRVST-----YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQAS 193
Query: 235 NGGRTIVMTIHQPSNMLYYMF--HKVLLLSEGYPLYSG 270
G TI+++ H NML F ++ L+ G + +G
Sbjct: 194 QEGLTILVSSH---NMLEVEFLCDRIALIHNGTIVETG 228
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 81/200 (40%), Gaps = 12/200 (6%)
Query: 74 VKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFS--NQMTRNTGFVTQEDV 131
+K GE L +LGPS + + + RN V Q
Sbjct: 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYA 93
Query: 132 LSPYLTVTETMVFT-ALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190
+ P++TV E + F + + P +K AE + E L+ L SG
Sbjct: 94 VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQL---------SG 144
Query: 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNM 250
G+R+RV++ + I++ P +L +DEP S LD+ + + + + KL + + +
Sbjct: 145 GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE 204
Query: 251 LYYMFHKVLLLSEGYPLYSG 270
M ++ +++ G L G
Sbjct: 205 AMTMGDRIAVMNRGQLLQIG 224
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 81/200 (40%), Gaps = 12/200 (6%)
Query: 74 VKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFS--NQMTRNTGFVTQEDV 131
+K GE L +LGPS + + + RN V Q
Sbjct: 35 IKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQSYA 94
Query: 132 LSPYLTVTETMVFT-ALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190
+ P++TV E + F + + P +K AE + E L+ L SG
Sbjct: 95 VWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQL---------SG 145
Query: 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNM 250
G+R+RV++ + I++ P +L +DEP S LD+ + + + + KL + + +
Sbjct: 146 GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVE 205
Query: 251 LYYMFHKVLLLSEGYPLYSG 270
M ++ +++ G L G
Sbjct: 206 AMTMGDRIAVMNRGQLLQIG 225
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/78 (39%), Positives = 46/78 (58%), Gaps = 2/78 (2%)
Query: 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIH 245
+SGG+R+ + I + I L+ LDEPTS LD +LS+L+ LA T+V T H
Sbjct: 128 SLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTH 187
Query: 246 QPSNMLYYMFHKVLLLSE 263
QP N + + +K LLL++
Sbjct: 188 QP-NQVVAIANKTLLLNK 204
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 53/253 (20%), Positives = 104/253 (41%), Gaps = 20/253 (7%)
Query: 52 KGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYN 111
K ++G K ++ G++ VK GE +A+LGPS ++
Sbjct: 10 KKYFGKVKAVD------GVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD 63
Query: 112 GKPFSN--QMTRNTGFVTQEDVLSPYLTVTETMVFT-ALLQLPNSFTEKEKIKCAEAVMT 168
++ R G V Q L P++TV E + F ++ EK ++ A ++
Sbjct: 64 DVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLI 123
Query: 169 ELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS 228
+ L L SGG+++RV++ + ++ P +L DEP S LD+ + + +
Sbjct: 124 DNLLDRKPTQL---------SGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRA 174
Query: 229 ILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFASIGYCPS 287
+ L G T V H + + M ++ + ++G + G + ++
Sbjct: 175 EIKHLQQELGITSVYVTHDQAEAM-TMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASF 233
Query: 288 VPTNPSDFLLDLA 300
+ P++FL D +
Sbjct: 234 IGNPPTNFLRDFS 246
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 156 EKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPT 215
E+E ++ A ++ L LS + G +SGG+ K V IG+ ++ NP ++ +DEP
Sbjct: 127 EEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPI 181
Query: 216 SGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFH 256
+G+ +A I + +L+L G T ++ H+ +L Y+ H
Sbjct: 182 AGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDH 222
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/101 (29%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 156 EKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPT 215
E+E ++ A ++ L LS + G +SGG+ K V IG+ ++ NP ++ +DEP
Sbjct: 127 EEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDEPI 181
Query: 216 SGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFH 256
+G+ +A I + +L+L G T ++ H+ +L Y+ H
Sbjct: 182 AGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDH 222
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 3/79 (3%)
Query: 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
R SGG+++R+SI + ++ P +L LD+ TS +D ++IL L + G T ++T
Sbjct: 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQK 537
Query: 246 QPSNMLYYMFHKVLLLSEG 264
P+ +L K+L+L EG
Sbjct: 538 IPTALLA---DKILVLHEG 553
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 101/237 (42%), Gaps = 22/237 (9%)
Query: 43 DIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXX 102
DIV +++ +YG+ I KGI V G+++ ++G +
Sbjct: 4 DIVLEVQSLHVYYGAIHAI------KGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR 57
Query: 103 XXXXXXTYNGKPFSNQMTR-----NTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEK 157
+NG+ +N+ V + + P LTV E + A + +K
Sbjct: 58 AQKGKIIFNGQDITNKPAHVINRXGIALVPEGRRIFPELTVYENLXXGAY-----NRKDK 112
Query: 158 EKIKCA-EAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS 216
E IK E + + + + +GG L SGGE++ ++IG+ + P LL DEP+
Sbjct: 113 EGIKRDLEWIFSLFPRLKERLKQLGGTL----SGGEQQXLAIGRALXSRPKLLXXDEPSL 168
Query: 217 GLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273
GL + ++ ++ K+ G TI++ + Q + + H +L G + G+AS
Sbjct: 169 GLAPILVSEVFEVIQKINQEGTTILL-VEQNALGALKVAHYGYVLETGQIVLEGKAS 224
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 55/101 (54%), Gaps = 5/101 (4%)
Query: 156 EKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPT 215
E+E ++ A ++ L LS + G +SGG+ K V IG+ ++ NP ++ +D+P
Sbjct: 127 EEEMVEKAFKILEFLKLSHLYDRKAGE-----LSGGQMKLVEIGRALMTNPKMIVMDQPI 181
Query: 216 SGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFH 256
+G+ +A I + +L+L G T ++ H+ +L Y+ H
Sbjct: 182 AGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDH 222
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 50/83 (60%), Gaps = 3/83 (3%)
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247
+SGGE++RV+I + IL P ++ LDE TS LD++ + I + L K+ RT ++ H+
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVC-ANRTTIVVAHRL 249
Query: 248 SNMLYYMFHKVLLLSEGYPLYSG 270
S ++ ++L++ +G + G
Sbjct: 250 STVVNA--DQILVIKDGCIVERG 270
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 99/227 (43%), Gaps = 32/227 (14%)
Query: 59 KKIEEKAILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPF--- 115
+ + E L ++G V+ GE+L ++GP+ + G+P
Sbjct: 8 QDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQ-FAGQPLEAW 66
Query: 116 -SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEK-EKIKCAEAVMTELGLS 173
+ ++ + +++Q+ P+ T + L Q + TE + A A+ +LG S
Sbjct: 67 SATKLALHRAYLSQQQT-PPF--ATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRS 123
Query: 174 ECKNSLIGGPLTRGVSGGERKRVSIGQEIL-----INPS--LLFLDEPTSGLDSTIAQQ- 225
T +SGGE +RV + +L NP+ LL LD+P + LD +AQQ
Sbjct: 124 -----------TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLD--VAQQS 170
Query: 226 -ILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271
+ IL L+ G IVM+ H ++ L + H+ LL G L SG
Sbjct: 171 ALDKILSALSQQGLAIVMSSHDLNHTLRHA-HRAWLLKGGKMLASGR 216
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 98/227 (43%), Gaps = 32/227 (14%)
Query: 59 KKIEEKAILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPF--- 115
+ + E L ++G V+ GE+L ++GP+ + G+P
Sbjct: 8 QDVAESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQ-FAGQPLEAW 66
Query: 116 -SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEK-EKIKCAEAVMTELGLS 173
+ ++ + +++Q+ P+ T + L Q + TE + A A+ +LG S
Sbjct: 67 SATKLALHRAYLSQQQT-PPF--ATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRS 123
Query: 174 ECKNSLIGGPLTRGVSGGERKRVSIGQEIL-----INPS--LLFLDEPTSGLDSTIAQQ- 225
T +SGGE +RV + +L NP+ LL LD+P LD +AQQ
Sbjct: 124 -----------TNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLD--VAQQS 170
Query: 226 -ILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271
+ IL L+ G IVM+ H ++ L + H+ LL G L SG
Sbjct: 171 ALDKILSALSQQGLAIVMSSHDLNHTLRHA-HRAWLLKGGKMLASGR 216
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 17/133 (12%)
Query: 119 MTRNTGFVTQEDVLSPY-----LTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS 173
+ +N G+V Q +P TV E + F+ + E E K + V+ +GLS
Sbjct: 79 LRKNVGYVFQ----NPSSQIIGATVEEDVAFSLEIM---GLDESEMRKRIKKVLELVGLS 131
Query: 174 ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233
+ PL +SGG+++R++I + + L LDEP S LD ++I +L L
Sbjct: 132 GLAAA---DPLN--LSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPSQREIFQVLESL 186
Query: 234 ANGGRTIVMTIHQ 246
N G+ I++ H+
Sbjct: 187 KNEGKGIILVTHE 199
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 10/99 (10%)
Query: 121 RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLI 180
R GFV Q+ L P+L+V + + L + ++ + AE +LG++ L+
Sbjct: 70 RGIGFVPQDYALFPHLSVYRNIAY-GLRNVERVERDRRVREMAE----KLGIAH----LL 120
Query: 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLD 219
R +SGGER+RV++ + ++I P LL LDEP S +D
Sbjct: 121 DRKPAR-LSGGERQRVALARALVIQPRLLLLDEPLSAVD 158
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 148 LQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPS 207
L+L N+ ++ K + E +++ +GL + +S +SGG+++RV+I + + NP
Sbjct: 107 LELDNTPKDEVKRRVTE-LLSLVGLGDKHDSY-----PSNLSGGQKQRVAIARALASNPK 160
Query: 208 LLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQ 246
+L DE TS LD + IL +L + G TI++ H+
Sbjct: 161 VLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHE 200
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 6/98 (6%)
Query: 186 RGVSGGERKRVSIGQEILI------NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRT 239
R +SGGE++RV + + + P LFLDEPTS LD Q L +L +L
Sbjct: 140 RVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPL 199
Query: 240 IVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMN 277
V + N+ +++LL++G + G +N
Sbjct: 200 AVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLN 237
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQ 246
+SGG+R+ V++ + ++ P LL LD+ TS LD+ ++ +L + RT+++ HQ
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDQATSALDAGNQLRVQRLLYESPEWASRTVLLITHQ 216
Query: 247 PSNMLYYMFHKVLLLSEG 264
S L H +L L EG
Sbjct: 217 LS--LAERAHHILFLKEG 232
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 18/120 (15%)
Query: 130 DVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS 189
DVL+ LTV E F F ++ I A + E+GL + +G P T +S
Sbjct: 688 DVLA--LTVDEAHDF---------FADESAIFRALDTLREVGLGYLR---LGQPATE-LS 732
Query: 190 GGERKRVSIGQEILINP---SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQ 246
GGE +R+ + E+ + ++ LDEPT+GL +++ L+KL + G T++ H+
Sbjct: 733 GGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHK 792
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 8/64 (12%)
Query: 188 VSGGERKRVSIGQEILINPSLLF-----LDEPTSGLDSTIAQQILSILLKLANGGRTIVM 242
+S GE +R+ + ++ N LF LDEP++GL + +LS L L GG ++ +
Sbjct: 380 LSPGELQRLRLATQLYSN---LFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFV 436
Query: 243 TIHQ 246
H
Sbjct: 437 VEHD 440
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247
+SGGE +RV+I +L F DEP+S LD ++ ++ +LAN G+ +++ H
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 288
Query: 248 SNMLY 252
+ + Y
Sbjct: 289 AVLDY 293
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 22/140 (15%)
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247
+SGGE +RV+I +L + + LDEP++ LD + + L + +
Sbjct: 472 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 531
Query: 248 SNMLYYMFHKVLLLSEGYPLYSGEA-------SGAMNYFASIGYCPSVPTNPSDFLLDLA 300
M+ Y+ + L++ EG P G A G + AS+G F D
Sbjct: 532 VLMIDYVSDR-LIVFEGEPGRHGRALPPMGMREGMNRFLASVGIT---------FRRDPD 581
Query: 301 SGMP---SNGSWKEQALEQK 317
SG P GS K++ EQK
Sbjct: 582 SGRPRANKEGSVKDR--EQK 599
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%)
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247
+SGGE +RV+I +L F DEP+S LD ++ ++ +LAN G+ +++ H
Sbjct: 215 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 274
Query: 248 SNMLY 252
+ + Y
Sbjct: 275 AVLDY 279
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 59/140 (42%), Gaps = 22/140 (15%)
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247
+SGGE +RV+I +L + + LDEP++ LD + + L + +
Sbjct: 458 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHD 517
Query: 248 SNMLYYMFHKVLLLSEGYPLYSGEA-------SGAMNYFASIGYCPSVPTNPSDFLLDLA 300
M+ Y+ + L++ EG P G A G + AS+G F D
Sbjct: 518 VLMIDYVSDR-LIVFEGEPGRHGRALPPMGMREGMNRFLASVGIT---------FRRDPD 567
Query: 301 SGMP---SNGSWKEQALEQK 317
SG P GS K++ EQK
Sbjct: 568 SGRPRANKEGSVKDR--EQK 585
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 55/100 (55%), Gaps = 7/100 (7%)
Query: 148 LQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPS 207
L+L N+ ++ K + E +++ +GL + +S +SGG+++RV+I + + NP
Sbjct: 130 LELDNTPKDEVKRRVTE-LLSLVGLGDKHDSY-----PSNLSGGQKQRVAIARALASNPK 183
Query: 208 LLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQ 246
+L D+ TS LD + IL +L + G TI++ H+
Sbjct: 184 VLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE 223
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 64/118 (54%), Gaps = 8/118 (6%)
Query: 148 LQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPS 207
L+L N+ ++ K + E +++ +GL + +S +SGG+++RV+I + + NP
Sbjct: 130 LELDNTPKDEVKRRVTE-LLSLVGLGDKHDSY-----PSNLSGGQKQRVAIARALASNPK 183
Query: 208 LLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
+L D+ TS LD + IL +L + G TI++ H+ +++ + V ++S G
Sbjct: 184 VLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHE-XDVVKRICDCVAVISNG 240
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 3/84 (3%)
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247
+SGG+R+RV+I + +L + +L LDE TS LD+ + I + L +L +T+++ H+
Sbjct: 481 LSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRL 539
Query: 248 SNMLYYMFHKVLLLSEGYPLYSGE 271
S + ++L++ EG + G
Sbjct: 540 STI--EQADEILVVDEGEIIERGR 561
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 81/190 (42%), Gaps = 40/190 (21%)
Query: 109 TYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMT 168
TY GK S D+L +TV E + F F IK V+
Sbjct: 755 TYKGKNIS-------------DILD--MTVDEALEF---------FKNIPSIKRTLQVLH 790
Query: 169 ELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL---INPSLLFLDEPTSGLDSTIAQQ 225
++GL K +G P T +SGGE +R+ + E+ +L LDEPT GL ++
Sbjct: 791 DVGLGYVK---LGQPAT-TLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRK 846
Query: 226 ILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFASIGYC 285
++ +L +L + G T+++ H +++ H + L EG G+ G Y + G
Sbjct: 847 LVEVLHRLVDRGNTVIVIEHN-LDVIKNADHIIDLGPEG-----GKEGG---YIVATGTP 897
Query: 286 PSVPTNPSDF 295
+ NP +
Sbjct: 898 EEIAKNPHSY 907
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Query: 188 VSGGERKRVSIGQEIL--INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
+SGGE +R+ + +I + + LDEPT GL ++++ L KL + G T+++ H
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVEH 524
Query: 246 Q 246
Sbjct: 525 D 525
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 74/180 (41%), Gaps = 29/180 (16%)
Query: 66 ILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFSNQ----MTR 121
+L+G+T ++PGE+ A++GP+ +GKP + R
Sbjct: 32 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 91
Query: 122 NTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG 181
V QE VF LQ ++ +K E +T + +S I
Sbjct: 92 QVAAVGQE-----------PQVFGRSLQENIAYGLTQKPTMEE--ITAAAVKSGAHSFIS 138
Query: 182 GPLTRG-----------VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSIL 230
G L +G +SGG+R+ V++ + ++ P +L LD+ TS LD+ Q+ +L
Sbjct: 139 G-LPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLL 197
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 49/86 (56%), Gaps = 9/86 (10%)
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDST---IAQQILSILLKLANGGRTIVMTI 244
+SGGER+R++I + +L +P ++ DE TS LDS + Q+ + L K RT+++
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK----NRTLIIIA 211
Query: 245 HQPSNMLYYMFHKVLLLSEGYPLYSG 270
H+ S + ++LL++G + G
Sbjct: 212 HRLSTI--SSAESIILLNKGKIVEKG 235
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 49/96 (51%), Gaps = 7/96 (7%)
Query: 154 FTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINP---SLLF 210
F KIK + ++GL K +G P T +SGGE +RV + E+ +L
Sbjct: 514 FASIPKIKRKLETLYDVGLGYMK---LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYI 569
Query: 211 LDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQ 246
LDEPT+GL ++L +L +L + G T+++ H
Sbjct: 570 LDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHN 605
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 21/151 (13%)
Query: 136 LTVTETMVFTALLQLPNSFTEKE---------KIKCAEAVMTELGLSECKNSLIGGPLTR 186
++VTE + F L+L TEKE +I+ + +GL S G L
Sbjct: 150 MSVTEALAFFDGLEL----TEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTL-- 203
Query: 187 GVSGGERKRVSIGQEI--LINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTI 244
SGGE +R+ + +I + L LDEP+ GL ++++ L + + G T+++
Sbjct: 204 --SGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261
Query: 245 HQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275
H ML + ++ + G ++ GE A
Sbjct: 262 HDEDTMLAADY--LIDIGPGAGIHGGEVVAA 290
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 154 FTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINP---SLLF 210
F KIK + ++GL K +G P T +SGGE +RV + E+ +L
Sbjct: 816 FASIPKIKRKLETLYDVGLGYMK---LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYI 871
Query: 211 LDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
LDEPT+GL ++L +L +L + G T+++ H
Sbjct: 872 LDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH 906
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 21/151 (13%)
Query: 136 LTVTETMVFTALLQLPNSFTEKE---------KIKCAEAVMTELGLSECKNSLIGGPLTR 186
++VTE + F L+L TEKE +I+ + +GL S G L
Sbjct: 452 MSVTEALAFFDGLEL----TEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTL-- 505
Query: 187 GVSGGERKRVSIGQEI--LINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTI 244
SGGE +R+ + +I + L LDEP+ GL ++++ L + + G T+++
Sbjct: 506 --SGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 563
Query: 245 HQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275
H ML + ++ + G ++ GE A
Sbjct: 564 HDEDTMLAADY--LIDIGPGAGIHGGEVVAA 592
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 7/95 (7%)
Query: 154 FTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINP---SLLF 210
F KIK + ++GL K +G P T +SGGE +RV + E+ +L
Sbjct: 816 FASIPKIKRKLETLYDVGLGYXK---LGQPATT-LSGGEAQRVKLAAELHRRSNGRTLYI 871
Query: 211 LDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
LDEPT+GL ++L +L +L + G T+++ H
Sbjct: 872 LDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEH 906
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 65/150 (43%), Gaps = 21/150 (14%)
Query: 137 TVTETMVFTALLQLPNSFTEKE---------KIKCAEAVMTELGLSECKNSLIGGPLTRG 187
+VTE + F L+L TEKE +I+ + +GL S G L
Sbjct: 453 SVTEALAFFDGLEL----TEKEAQIARLILREIRDRLGFLQNVGLDYLTLSRSAGTL--- 505
Query: 188 VSGGERKRVSIGQEI--LINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
SGGE +R+ + +I + L LDEP+ GL ++++ L + G T+++ H
Sbjct: 506 -SGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDLGNTLIVVEH 564
Query: 246 QPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275
L + ++ + G ++ GE A
Sbjct: 565 DEDTXLAADY--LIDIGPGAGIHGGEVVAA 592
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247
+SGG+R+R++I + +L + +L LDE TS LD+ + I + L +L RT ++ H+
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRL 539
Query: 248 SNM 250
S +
Sbjct: 540 STI 542
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247
+SGG+R+R++I + +L + +L LDE TS LD+ + I + L +L RT ++ H+
Sbjct: 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRL 539
Query: 248 SNM 250
S +
Sbjct: 540 STI 542
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 31/209 (14%)
Query: 66 ILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFSNQMTRNTGF 125
+LK I ++ GEMLA+ G + ++G+ F
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR---------VSF 103
Query: 126 VTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG-GPL 184
+Q + P T+ E ++F + + K +K + +E N+++G G +
Sbjct: 104 CSQFSWIMPG-TIKENIIFGVSY---DEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL-SILLKL-ANGGRTIV- 241
T +SGG+R R+S+ + + + L LD P LD +Q+ S + KL AN R +V
Sbjct: 160 T--LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 242 ------------MTIHQPSNMLYYMFHKV 258
+ +HQ S+ Y F ++
Sbjct: 218 SKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 42/78 (53%), Gaps = 3/78 (3%)
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQ 246
+SGG+R+ V++ + ++ P LL LD TS LD+ ++ +L + RT+++ Q
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ 216
Query: 247 PSNMLYYMFHKVLLLSEG 264
S L H +L L EG
Sbjct: 217 LS--LAERAHHILFLKEG 232
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 86/209 (41%), Gaps = 31/209 (14%)
Query: 66 ILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFSNQMTRNTGF 125
+LK I ++ GEMLA+ G + ++G+ F
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR---------VSF 103
Query: 126 VTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG-GPL 184
+Q + P T+ E ++F + + K +K + +E N+++G G +
Sbjct: 104 CSQFSWIMPG-TIKENIIFGVSY---DEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 159
Query: 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL-SILLKL-ANGGRTIV- 241
T +SGG+R R+S+ + + + L LD P LD +Q+ S + KL AN R +V
Sbjct: 160 T--LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 217
Query: 242 ------------MTIHQPSNMLYYMFHKV 258
+ +HQ S+ Y F ++
Sbjct: 218 SKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 36/65 (55%)
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247
+SGGE +RV+I +L N + F DEP+S LD + +L+ G+++++ H
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL 218
Query: 248 SNMLY 252
+ + Y
Sbjct: 219 AVLDY 223
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 57/140 (40%), Gaps = 20/140 (14%)
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247
+SGGE +RV+I +L + + LDEP++ LD + + L + +
Sbjct: 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEKNEKTALVVEHD 461
Query: 248 SNMLYYMFHKVLLLSEGYPLYSGEA-------SGAMNYFASIGYCPSVPTNPSDFLLDLA 300
+ Y+ + L + EG P G A G + ASIG F D
Sbjct: 462 VLXIDYVSDR-LXVFEGEPGKYGRALPPXGXREGXNRFLASIGIT---------FRRDPD 511
Query: 301 SGMP---SNGSWKEQALEQK 317
+G P GS K++ ++K
Sbjct: 512 TGRPRANKEGSVKDREQKEK 531
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 15/103 (14%)
Query: 124 GFVTQEDVLSPYL------TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKN 177
GF TQE+ + Y+ T ++T V + + + KE IK + E G ++
Sbjct: 488 GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFE--SGVGTKEAIKDK---LIEFGFTD--- 539
Query: 178 SLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220
+I P++ +SGG + ++++ + +L N +L LDEPT+ LD+
Sbjct: 540 EMIAMPIS-ALSGGWKMKLALARAVLRNADILLLDEPTNHLDT 581
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIV 241
RG+SGG++ ++ + P L+ LDEPT+ LD + LS LK GG I+
Sbjct: 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRD-SLGALSKALKEFEGGVIII 954
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 15/103 (14%)
Query: 124 GFVTQEDVLSPYL------TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKN 177
GF TQE+ + Y+ T ++T V + + + KE IK + E G ++
Sbjct: 488 GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFE--SGVGTKEAIK---DKLIEFGFTD--- 539
Query: 178 SLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220
I P++ +SGG + ++++ + +L N +L LDEPT+ LD+
Sbjct: 540 EXIAXPIS-ALSGGWKXKLALARAVLRNADILLLDEPTNHLDT 581
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
RG+SGG++ ++ + P L+ LDEPT+ LD + LS LK GG V+ I
Sbjct: 900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRD-SLGALSKALKEFEGG---VIIIT 955
Query: 246 QPSNMLYYMFHKVLLLSEGYPLYSG 270
+ + +V + +G SG
Sbjct: 956 HSAEFTKNLTEEVWAVKDGRXTPSG 980
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 15/103 (14%)
Query: 124 GFVTQEDVLSPYL------TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKN 177
GF TQE+ + Y+ T ++T V + + + KE IK + E G ++
Sbjct: 482 GFPTQEECRTVYVEHDIDGTHSDTSVLDFVFE--SGVGTKEAIK---DKLIEFGFTD--- 533
Query: 178 SLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220
I P++ +SGG + ++++ + +L N +L LDEPT+ LD+
Sbjct: 534 EXIAXPIS-ALSGGWKXKLALARAVLRNADILLLDEPTNHLDT 575
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245
RG+SGG++ ++ + P L+ LDEPT+ LD + LS LK GG V+ I
Sbjct: 894 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRD-SLGALSKALKEFEGG---VIIIT 949
Query: 246 QPSNMLYYMFHKVLLLSEGYPLYSG 270
+ + +V + +G SG
Sbjct: 950 HSAEFTKNLTEEVWAVKDGRXTPSG 974
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL 227
+SGG ++RV I +L++P +L LDEPTS LD I+
Sbjct: 155 LSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHII 194
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 86/209 (41%), Gaps = 32/209 (15%)
Query: 66 ILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFSNQMTRNTGF 125
+LK I ++ GEMLA+ G + ++G+ F
Sbjct: 53 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSGR---------VSF 103
Query: 126 VTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG-GPL 184
+Q + P T+ E ++ + + + K +K + +E N+++G G +
Sbjct: 104 CSQFSWIMPG-TIKENIIGVSY----DEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGV 158
Query: 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL-SILLKL-ANGGRTIV- 241
T +SGG+R R+S+ + + + L LD P LD +Q+ S + KL AN R +V
Sbjct: 159 T--LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVT 216
Query: 242 ------------MTIHQPSNMLYYMFHKV 258
+ +HQ S+ Y F ++
Sbjct: 217 SKMEHLRKADKILILHQGSSYFYGTFSEL 245
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 166 VMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLD 219
V L L + S + L G SGGE+KR I Q +++ P+ LDE SGLD
Sbjct: 122 VKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLD 175
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 172 LSECKNSLIG-GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL-SI 229
+E N+++G G +T +SGG+R R+S+ + + + L LD P LD +Q+ S
Sbjct: 146 FAEQDNTVLGEGGVT--LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 230 LLKL-ANGGRTIV-------------MTIHQPSNMLYYMFHKV 258
+ KL AN R +V + +HQ S+ Y F ++
Sbjct: 204 VCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 18/103 (17%)
Query: 172 LSECKNSLIG-GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL-SI 229
+E N+++G G +T +SGG+R R+S+ + + + L LD P LD +Q+ S
Sbjct: 146 FAEQDNTVLGEGGVT--LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESC 203
Query: 230 LLKL-ANGGRTIV-------------MTIHQPSNMLYYMFHKV 258
+ KL AN R +V + +HQ S+ Y F ++
Sbjct: 204 VCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSEL 246
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL-SILLKL- 233
K++++ G +SGG+R R+S+ + + + L LD P LD ++I S + KL
Sbjct: 131 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 190
Query: 234 ANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMN 277
AN R +V + + K+L+L EG + G S N
Sbjct: 191 ANKTRILVTSKMEHLKKA----DKILILHEGSSYFYGTFSELQN 230
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL-SILLKL- 233
K++++ G +SGG+R R+S+ + + + L LD P LD ++I S + KL
Sbjct: 119 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 178
Query: 234 ANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMN 277
AN R +V + + K+L+L EG + G S N
Sbjct: 179 ANKTRILVTSKMEHLKKA----DKILILHEGSSYFYGTFSELQN 218
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 97/237 (40%), Gaps = 32/237 (13%)
Query: 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXX 98
+KF+D+ + Y ++ ++ +L+G+T + PG++ A++GP+
Sbjct: 17 VKFQDVSFA-------YPNHPNVQ---VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ 66
Query: 99 XXXXXXXXXXTYNGKPF----SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF 154
+G+P + + V QE +L + E + +
Sbjct: 67 NLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGR-SFRENIAY--------GL 117
Query: 155 TEKEKIKCAEAVMTELGLSECKNSLIGGPLTR-GVSG-----GERKRVSIGQEILINPSL 208
T ++ AV E G + + G T G +G G+R+ V++ + ++ P L
Sbjct: 118 TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLAVGQRQAVALARALIRKPRL 177
Query: 209 LFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264
L LD TS LD+ ++ +L + RT+++ Q S L H +L L EG
Sbjct: 178 LILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS--LAERAHHILFLKEG 232
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL-SILLKL- 233
K++++ G +SGG+R R+S+ + + + L LD P LD ++I S + KL
Sbjct: 118 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 177
Query: 234 ANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMN 277
AN R +V + + K+L+L EG + G S N
Sbjct: 178 ANKTRILVTSKMEHLKKA----DKILILHEGSSYFYGTFSELQN 217
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 188 VSGGERKRVSIGQEIL---INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTI 244
+SGGE +RV + E+ ++ LDEPT+GL +++L+++ L + G T+++
Sbjct: 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIE 923
Query: 245 H 245
H
Sbjct: 924 H 924
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 4/68 (5%)
Query: 188 VSGGERKRVSIGQEI---LINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTI 244
+SGGE +R+ + +I L+ L LDEP+ GL ++++ L +L + G T+++
Sbjct: 522 LSGGEAQRIRLATQIGSGLVG-VLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVE 580
Query: 245 HQPSNMLY 252
H + +
Sbjct: 581 HDEDTIEH 588
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL-SILLKL- 233
K++++ G +SGG+R R+S+ + + + L LD P LD ++I S + KL
Sbjct: 149 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 208
Query: 234 ANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMN 277
AN R +V + + K+L+L EG + G S N
Sbjct: 209 ANKTRILVTSKMEHLKKA----DKILILHEGSSYFYGTFSELQN 248
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL-SILLKL- 233
K++++ G +SGG+R R+S+ + + + L LD P LD ++I S + KL
Sbjct: 148 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 207
Query: 234 ANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMN 277
AN R +V + + K+L+L EG + G S N
Sbjct: 208 ANKTRILVTSKMEHLKKA----DKILILHEGSSYFYGTFSELQN 247
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLD 219
+S GE++RV I + + P +L LDEP +GLD
Sbjct: 162 LSTGEKQRVXIARALXGQPQVLILDEPAAGLD 193
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 50/104 (48%), Gaps = 6/104 (5%)
Query: 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL-SILLKL- 233
K++++ G +SGG+R R+S+ + + + L LD P LD ++I S + KL
Sbjct: 148 KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM 207
Query: 234 ANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMN 277
AN R +V + + K+L+L EG + G S N
Sbjct: 208 ANKTRILVTSKMEH----LKKADKILILHEGSSYFYGTFSELQN 247
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 6/68 (8%)
Query: 185 TRGVSGGERKRVSIGQEILINP------SLLFLDEPTSGLDSTIAQQILSILLKLANGGR 238
RG+SGGER +SI + + F+DE S LD+ ++I S+L +L +
Sbjct: 277 ARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNK 336
Query: 239 TIVMTIHQ 246
IV H
Sbjct: 337 VIVFITHD 344
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 25/40 (62%)
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL 227
+SGG+++RVS+ + + N + D+P S +D+ + + I
Sbjct: 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF 167
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 185 TRGVSGGERKRVSIGQEILINP------SLLFLDEPTSGLDSTIAQQILSILLKLANGGR 238
RG+SGGER +SI + F+DE S LD+ ++I S+L +L +
Sbjct: 277 ARGLSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNK 336
Query: 239 TIVMTIHQ 246
IV H
Sbjct: 337 VIVFITHD 344
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS--ILLKLANGGRTIVMTIH 245
+SGGE +RV+I + I + +DEP++ LDS Q+I+ ++ + + +
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDS--EQRIICSKVIRRFILHNKKTAFIVE 525
Query: 246 QPSNMLYYMFHKVLLLSEGYPLYSGEASG 274
M Y+ KV++ EG P + A
Sbjct: 526 HDFIMATYLADKVIVF-EGIPSKNAHARA 553
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247
+SGGE +R +IG + + DEP+S LD I+ L + ++ H
Sbjct: 222 LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDL 281
Query: 248 SNMLY 252
S + Y
Sbjct: 282 SVLDY 286
>pdb|1VH1|A Chain A, Crystal Structure Of Cmp-Kdo Synthetase
pdb|1VH1|B Chain B, Crystal Structure Of Cmp-Kdo Synthetase
pdb|1VH1|C Chain C, Crystal Structure Of Cmp-Kdo Synthetase
pdb|1VH1|D Chain D, Crystal Structure Of Cmp-Kdo Synthetase
Length = 256
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 212 DEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271
DEP + +TI +Q+ L + G T+ + IH KV+L +EGY LY
Sbjct: 100 DEPX--IPATIIRQVADNLAQRQVGXATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSR 157
Query: 272 AS 273
A+
Sbjct: 158 AT 159
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/187 (21%), Positives = 74/187 (39%), Gaps = 13/187 (6%)
Query: 63 EKAILKGITGMVKPGEMLAMLGPSXXXXXXXXXXXXXXXXXXXXXXTYNGKPFSNQMTRN 122
+K +L+ IT ++ G ++ GP+ YNG P + +
Sbjct: 21 DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK--VKG 78
Query: 123 TGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGG 182
F E+++ P E A+ L K +I A + + + + K L G
Sbjct: 79 KIFFLPEEIIVPRKISVEDY-LKAVASLYGVKVNKNEIMDA---LESVEVLDLKKKL--G 132
Query: 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL-SILLKLANGGRTIV 241
L++G +RV + +L+N + LD+P +D ++L SIL L G I+
Sbjct: 133 ELSQGTI----RRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVII 188
Query: 242 MTIHQPS 248
+ + S
Sbjct: 189 SSREELS 195
>pdb|3K8D|A Chain A, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8D|B Chain B, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8D|C Chain C, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8D|D Chain D, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase In Complex With Ctp And 2-Deoxy-Kdo
pdb|3K8E|C Chain C, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
pdb|3K8E|D Chain D, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
pdb|3K8E|A Chain A, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
pdb|3K8E|B Chain B, Crystal Structure Of E. Coli Lipopolysaccharide Specific
Cmp-Kdo Synthetase
Length = 264
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Query: 212 DEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271
DEP + +TI +Q+ L + G T+ + IH KV+L +EGY LY
Sbjct: 116 DEPM--IPATIIRQVADNLAQRQVGMATLAVPIHNAEEAFNPNAVKVVLDAEGYALYFSR 173
Query: 272 AS 273
A+
Sbjct: 174 AT 175
>pdb|1F2T|B Chain B, Crystal Structure Of Atp-free Rad50 Abc-atpase
pdb|1F2U|B Chain B, Crystal Structure Of Rad50 Abc-Atpase
pdb|1F2U|D Chain D, Crystal Structure Of Rad50 Abc-Atpase
Length = 148
Score = 28.5 bits (62), Expect = 9.1, Method: Composition-based stats.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 183 PLTRGVSGGERK------RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236
PLT +SGGER R+++ + SLL LDEPT LD +++++I+ +
Sbjct: 54 PLTF-LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK 112
Query: 237 GRTIVMTIH 245
+++ H
Sbjct: 113 IPQVILVSH 121
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,657,255
Number of Sequences: 62578
Number of extensions: 534602
Number of successful extensions: 1168
Number of sequences better than 100.0: 108
Number of HSP's better than 100.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1011
Number of HSP's gapped (non-prelim): 154
length of query: 508
length of database: 14,973,337
effective HSP length: 103
effective length of query: 405
effective length of database: 8,527,803
effective search space: 3453760215
effective search space used: 3453760215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)