Query 010509
Match_columns 508
No_of_seqs 438 out of 3431
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 01:22:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010509.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010509hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0061 Transporter, ABC super 100.0 3E-100 8E-105 838.7 48.7 462 35-505 22-609 (613)
2 PLN03211 ABC transporter G-25; 100.0 3.8E-98 8E-103 829.9 56.3 470 33-505 34-659 (659)
3 TIGR00955 3a01204 The Eye Pigm 100.0 2.6E-94 5.7E-99 797.4 51.4 462 37-503 16-612 (617)
4 PLN03140 ABC transporter G fam 100.0 2.6E-90 5.6E-95 817.5 54.9 473 35-508 864-1470(1470)
5 TIGR00956 3a01205 Pleiotropic 100.0 3.4E-90 7.3E-95 818.3 52.0 469 35-504 26-694 (1394)
6 PLN03140 ABC transporter G fam 100.0 6.6E-90 1.4E-94 814.0 50.1 468 35-504 128-789 (1470)
7 TIGR00956 3a01205 Pleiotropic 100.0 1.9E-87 4.1E-92 794.8 52.4 458 37-506 758-1392(1394)
8 KOG0065 Pleiotropic drug resis 100.0 2.7E-85 5.9E-90 735.4 26.6 465 36-508 779-1387(1391)
9 KOG0065 Pleiotropic drug resis 100.0 7.1E-82 1.5E-86 707.9 38.5 443 63-506 127-732 (1391)
10 COG1126 GlnQ ABC-type polar am 100.0 9.9E-57 2.1E-61 422.0 25.3 217 38-275 2-223 (240)
11 COG1135 AbcC ABC-type metal io 100.0 3.6E-53 7.7E-58 416.4 23.0 222 38-276 1-230 (339)
12 COG1131 CcmA ABC-type multidru 100.0 2.1E-52 4.6E-57 423.0 27.2 225 38-283 4-232 (293)
13 COG1125 OpuBA ABC-type proline 100.0 1.2E-52 2.6E-57 401.9 22.3 218 38-277 1-225 (309)
14 COG1120 FepC ABC-type cobalami 100.0 1.6E-52 3.5E-57 410.4 22.4 220 38-276 2-227 (258)
15 COG1127 Ttg2A ABC-type transpo 100.0 6.7E-52 1.5E-56 394.8 23.9 220 36-276 6-234 (263)
16 COG4555 NatA ABC-type Na+ tran 100.0 6.1E-52 1.3E-56 384.7 19.8 235 38-301 1-238 (245)
17 COG3839 MalK ABC-type sugar tr 100.0 2.9E-51 6.3E-56 415.8 24.4 219 38-278 3-224 (338)
18 COG3638 ABC-type phosphate/pho 100.0 1.4E-51 3E-56 391.7 20.5 227 37-281 2-241 (258)
19 COG1136 SalX ABC-type antimicr 100.0 6.8E-51 1.5E-55 391.7 25.2 209 39-266 2-220 (226)
20 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 7.1E-51 1.5E-55 397.0 24.4 219 37-277 3-227 (254)
21 COG3842 PotA ABC-type spermidi 100.0 3E-51 6.6E-56 417.7 22.6 219 37-276 4-225 (352)
22 COG1116 TauB ABC-type nitrate/ 100.0 8.3E-51 1.8E-55 391.9 22.7 204 38-264 3-207 (248)
23 PRK13537 nodulation ABC transp 100.0 1.3E-49 2.7E-54 405.5 29.0 220 37-278 6-228 (306)
24 COG1118 CysA ABC-type sulfate/ 100.0 1.8E-50 3.9E-55 396.4 20.0 221 38-278 2-228 (345)
25 PRK11650 ugpC glycerol-3-phosp 100.0 6.4E-49 1.4E-53 407.6 28.5 218 38-276 3-223 (356)
26 TIGR02314 ABC_MetN D-methionin 100.0 8E-49 1.7E-53 404.3 28.7 221 38-276 1-229 (343)
27 PRK13536 nodulation factor exp 100.0 1.1E-48 2.3E-53 403.5 29.7 223 34-278 37-262 (340)
28 COG2884 FtsE Predicted ATPase 100.0 1.4E-49 3E-54 366.2 19.9 213 38-271 1-220 (223)
29 TIGR03265 PhnT2 putative 2-ami 100.0 9.6E-49 2.1E-53 405.8 28.6 218 38-277 4-224 (353)
30 cd03261 ABC_Org_Solvent_Resist 100.0 1.3E-48 2.9E-53 383.2 26.8 216 39-275 1-224 (235)
31 PRK11432 fbpC ferric transport 100.0 1.8E-48 4E-53 403.2 29.0 217 38-276 6-225 (351)
32 TIGR03258 PhnT 2-aminoethylpho 100.0 3.1E-48 6.8E-53 402.9 28.7 218 38-277 5-228 (362)
33 PRK10851 sulfate/thiosulfate t 100.0 4.1E-48 9E-53 401.1 28.9 220 38-276 2-225 (353)
34 COG1124 DppF ABC-type dipeptid 100.0 1.2E-48 2.5E-53 374.1 22.1 222 37-278 2-232 (252)
35 PRK09452 potA putrescine/sperm 100.0 6.3E-48 1.4E-52 402.1 29.0 218 37-276 13-233 (375)
36 TIGR01288 nodI ATP-binding ABC 100.0 7.2E-48 1.6E-52 392.3 28.7 219 37-277 3-224 (303)
37 cd03265 ABC_DrrA DrrA is the A 100.0 9.1E-48 2E-52 373.6 26.4 214 39-274 1-218 (220)
38 TIGR01188 drrA daunorubicin re 100.0 5.7E-48 1.2E-52 392.8 26.0 208 62-278 4-214 (302)
39 cd03259 ABC_Carb_Solutes_like 100.0 9.1E-48 2E-52 371.7 25.4 210 39-270 1-213 (213)
40 COG1122 CbiO ABC-type cobalt t 100.0 7.7E-48 1.7E-52 376.2 24.5 219 38-278 3-229 (235)
41 PRK11607 potG putrescine trans 100.0 2.1E-47 4.5E-52 398.7 29.4 219 37-277 18-239 (377)
42 PRK11000 maltose/maltodextrin 100.0 1.7E-47 3.7E-52 399.1 28.7 217 38-276 3-222 (369)
43 cd03296 ABC_CysA_sulfate_impor 100.0 1.9E-47 4.1E-52 376.1 27.4 219 38-275 2-224 (239)
44 TIGR00960 3a0501s02 Type II (G 100.0 1.3E-47 2.7E-52 371.5 25.2 208 39-266 2-216 (216)
45 TIGR03522 GldA_ABC_ATP gliding 100.0 2.3E-47 5E-52 388.2 28.4 218 38-278 2-222 (301)
46 cd03219 ABC_Mj1267_LivG_branch 100.0 2.3E-47 4.9E-52 374.4 26.6 218 39-275 1-230 (236)
47 PRK11153 metN DL-methionine tr 100.0 3.4E-47 7.4E-52 393.4 28.8 221 38-276 1-229 (343)
48 COG1117 PstB ABC-type phosphat 100.0 3.7E-48 8E-53 362.7 19.4 232 36-296 5-248 (253)
49 cd03269 ABC_putative_ATPase Th 100.0 2.4E-47 5.1E-52 368.0 25.5 210 39-270 1-210 (210)
50 cd03218 ABC_YhbG The ABC trans 100.0 3.5E-47 7.6E-52 372.1 26.4 216 39-276 1-221 (232)
51 PRK13643 cbiO cobalt transport 100.0 6.7E-47 1.5E-51 382.5 29.2 241 38-296 1-255 (288)
52 cd03293 ABC_NrtD_SsuB_transpor 100.0 4.6E-47 9.9E-52 368.7 26.9 216 39-273 1-219 (220)
53 COG4152 ABC-type uncharacteriz 100.0 4.5E-48 9.7E-53 368.2 19.0 222 38-281 2-223 (300)
54 COG1137 YhbG ABC-type (unclass 100.0 7.2E-49 1.6E-53 363.9 13.2 220 38-277 4-228 (243)
55 cd03301 ABC_MalK_N The N-termi 100.0 4.2E-47 9.1E-52 366.9 26.0 210 39-270 1-213 (213)
56 cd03266 ABC_NatA_sodium_export 100.0 4E-47 8.6E-52 368.3 25.8 214 39-270 2-218 (218)
57 cd03263 ABC_subfamily_A The AB 100.0 4.1E-47 8.8E-52 368.8 25.9 216 39-275 1-219 (220)
58 cd03258 ABC_MetN_methionine_tr 100.0 4.8E-47 1E-51 371.6 26.5 219 39-275 2-228 (233)
59 TIGR01186 proV glycine betaine 100.0 4.7E-47 1E-51 393.4 26.9 207 61-276 3-218 (363)
60 PRK13637 cbiO cobalt transport 100.0 1.2E-46 2.7E-51 380.4 29.2 234 38-288 2-248 (287)
61 cd03256 ABC_PhnC_transporter A 100.0 6.3E-47 1.4E-51 372.2 25.5 220 39-276 1-233 (241)
62 PRK09493 glnQ glutamine ABC tr 100.0 1.2E-46 2.6E-51 370.5 27.5 217 39-276 2-224 (240)
63 PRK11264 putative amino-acid A 100.0 1.3E-46 2.8E-51 372.4 27.5 217 38-275 3-231 (250)
64 PRK09536 btuD corrinoid ABC tr 100.0 7.2E-47 1.6E-51 396.6 27.1 219 38-275 3-226 (402)
65 PRK13647 cbiO cobalt transport 100.0 2.2E-46 4.9E-51 376.1 29.2 229 38-287 4-239 (274)
66 cd03260 ABC_PstB_phosphate_tra 100.0 6.9E-47 1.5E-51 369.0 24.8 215 39-274 1-226 (227)
67 COG0411 LivG ABC-type branched 100.0 1.8E-47 3.9E-52 366.2 19.9 222 37-277 3-239 (250)
68 PRK13634 cbiO cobalt transport 100.0 1.8E-46 3.9E-51 379.7 28.4 234 38-289 2-250 (290)
69 cd03295 ABC_OpuCA_Osmoprotecti 100.0 1.4E-46 3E-51 370.6 26.8 215 39-275 1-223 (242)
70 PRK11831 putative ABC transpor 100.0 2.2E-46 4.7E-51 375.2 28.1 217 38-275 7-231 (269)
71 cd03224 ABC_TM1139_LivF_branch 100.0 1E-46 2.2E-51 366.3 24.9 214 39-276 1-220 (222)
72 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 1E-46 2.2E-51 365.4 24.5 209 39-266 1-218 (218)
73 cd03268 ABC_BcrA_bacitracin_re 100.0 1.3E-46 2.9E-51 362.2 24.3 206 39-270 1-208 (208)
74 PRK13650 cbiO cobalt transport 100.0 3.7E-46 7.9E-51 375.5 28.3 230 38-287 4-242 (279)
75 TIGR02673 FtsE cell division A 100.0 1.9E-46 4.2E-51 362.5 25.2 206 39-265 2-214 (214)
76 PRK15079 oligopeptide ABC tran 100.0 4.3E-46 9.3E-51 383.0 29.3 233 37-276 7-250 (331)
77 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 4.9E-46 1.1E-50 365.4 28.1 216 39-277 2-221 (236)
78 TIGR02315 ABC_phnC phosphonate 100.0 1.6E-46 3.4E-51 370.0 24.2 219 39-275 2-233 (243)
79 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1.9E-46 4.1E-51 375.6 25.1 207 61-276 34-249 (269)
80 PRK11629 lolD lipoprotein tran 100.0 7.2E-46 1.6E-50 363.5 28.2 216 38-272 5-229 (233)
81 PRK13631 cbiO cobalt transport 100.0 9.4E-46 2E-50 379.0 30.1 234 37-288 20-279 (320)
82 PRK13651 cobalt transporter AT 100.0 6.7E-46 1.5E-50 377.8 28.7 232 38-287 2-267 (305)
83 cd03292 ABC_FtsE_transporter F 100.0 3.4E-46 7.4E-51 360.6 25.3 207 39-266 1-214 (214)
84 PRK13636 cbiO cobalt transport 100.0 7E-46 1.5E-50 374.2 28.6 232 36-288 3-245 (283)
85 TIGR00972 3a0107s01c2 phosphat 100.0 7.2E-46 1.6E-50 366.6 27.9 215 38-275 1-230 (247)
86 PRK10895 lipopolysaccharide AB 100.0 4.5E-46 9.7E-51 366.7 26.3 218 38-276 3-225 (241)
87 PRK10619 histidine/lysine/argi 100.0 9E-46 2E-50 368.1 28.7 218 38-276 5-240 (257)
88 cd03264 ABC_drug_resistance_li 100.0 3.7E-46 7.9E-51 360.0 24.7 208 39-270 1-211 (211)
89 PRK11124 artP arginine transpo 100.0 8.2E-46 1.8E-50 365.0 27.7 216 38-275 2-228 (242)
90 PRK11614 livF leucine/isoleuci 100.0 5.4E-46 1.2E-50 365.2 26.0 215 38-276 5-225 (237)
91 COG3840 ThiQ ABC-type thiamine 100.0 1E-46 2.2E-51 344.7 19.2 214 39-276 2-218 (231)
92 COG0410 LivF ABC-type branched 100.0 2.2E-46 4.8E-51 356.1 22.2 217 38-277 3-226 (237)
93 PRK13646 cbiO cobalt transport 100.0 7.9E-46 1.7E-50 374.3 27.7 222 38-277 2-235 (286)
94 PRK10908 cell division protein 100.0 7.9E-46 1.7E-50 360.5 26.5 208 39-267 2-216 (222)
95 cd03234 ABCG_White The White s 100.0 8.5E-46 1.8E-50 361.4 26.8 218 39-270 4-226 (226)
96 PRK13641 cbiO cobalt transport 100.0 9.3E-46 2E-50 374.0 27.9 221 38-276 2-233 (287)
97 PRK11300 livG leucine/isoleuci 100.0 1E-45 2.2E-50 367.0 27.4 220 38-276 5-242 (255)
98 cd03226 ABC_cobalt_CbiO_domain 100.0 3.3E-46 7.2E-51 358.8 23.1 201 41-267 2-205 (205)
99 PRK13638 cbiO cobalt transport 100.0 1.1E-45 2.5E-50 370.3 27.8 217 38-276 1-224 (271)
100 PRK11248 tauB taurine transpor 100.0 1.3E-45 2.8E-50 366.9 27.9 213 38-273 1-216 (255)
101 PRK13635 cbiO cobalt transport 100.0 1.6E-45 3.5E-50 370.8 28.8 229 38-287 5-242 (279)
102 TIGR03411 urea_trans_UrtD urea 100.0 1.3E-45 2.9E-50 363.4 27.3 218 38-275 2-229 (242)
103 PRK13548 hmuV hemin importer A 100.0 1.1E-45 2.4E-50 367.9 26.9 217 38-276 2-229 (258)
104 cd03257 ABC_NikE_OppD_transpor 100.0 1.1E-45 2.4E-50 360.2 25.9 215 39-270 2-228 (228)
105 cd03262 ABC_HisP_GlnQ_permease 100.0 8.7E-46 1.9E-50 357.5 24.9 207 39-266 1-213 (213)
106 PRK13644 cbiO cobalt transport 100.0 1.3E-45 2.9E-50 370.5 26.8 216 39-276 2-223 (274)
107 TIGR03005 ectoine_ehuA ectoine 100.0 1.6E-45 3.5E-50 365.1 27.1 216 39-275 1-234 (252)
108 TIGR01978 sufC FeS assembly AT 100.0 1.6E-45 3.4E-50 362.7 26.6 227 39-284 1-240 (243)
109 cd03225 ABC_cobalt_CbiO_domain 100.0 8E-46 1.7E-50 357.4 23.9 205 41-265 2-211 (211)
110 PRK11308 dppF dipeptide transp 100.0 2.7E-45 5.9E-50 376.6 29.3 230 37-277 4-244 (327)
111 PRK13649 cbiO cobalt transport 100.0 3.3E-45 7.1E-50 368.6 29.0 221 38-276 2-233 (280)
112 PRK11231 fecE iron-dicitrate t 100.0 1.4E-45 3E-50 366.4 25.8 219 38-275 2-225 (255)
113 PRK14268 phosphate ABC transpo 100.0 3.2E-45 6.8E-50 364.5 28.3 215 37-275 11-240 (258)
114 PRK13639 cbiO cobalt transport 100.0 3.7E-45 8E-50 367.4 28.9 228 39-287 2-239 (275)
115 TIGR02211 LolD_lipo_ex lipopro 100.0 2.2E-45 4.8E-50 356.8 26.1 210 39-267 2-220 (221)
116 PRK13652 cbiO cobalt transport 100.0 3.5E-45 7.5E-50 368.0 28.0 219 38-277 3-227 (277)
117 PRK09473 oppD oligopeptide tra 100.0 4.4E-45 9.6E-50 375.6 29.2 226 37-276 11-250 (330)
118 cd03235 ABC_Metallic_Cations A 100.0 7.2E-46 1.6E-50 358.4 21.9 209 41-270 2-213 (213)
119 PRK13648 cbiO cobalt transport 100.0 5.7E-45 1.2E-49 364.9 29.1 231 36-287 5-244 (269)
120 PRK10575 iron-hydroxamate tran 100.0 2.4E-45 5.3E-50 366.8 26.3 221 37-276 10-236 (265)
121 PRK14247 phosphate ABC transpo 100.0 4.7E-45 1E-49 361.3 28.1 218 38-276 3-233 (250)
122 PRK11247 ssuB aliphatic sulfon 100.0 2.2E-45 4.8E-50 365.5 25.8 207 38-273 12-219 (257)
123 PRK10070 glycine betaine trans 100.0 3.2E-45 7E-50 384.0 28.3 230 38-276 4-253 (400)
124 PRK14242 phosphate transporter 100.0 4.7E-45 1E-49 361.9 27.8 221 36-275 4-235 (253)
125 PRK14273 phosphate ABC transpo 100.0 5.2E-45 1.1E-49 361.9 27.9 217 37-276 6-237 (254)
126 TIGR03740 galliderm_ABC gallid 100.0 3.5E-45 7.7E-50 356.2 26.1 210 39-274 1-210 (223)
127 PRK11022 dppD dipeptide transp 100.0 5.6E-45 1.2E-49 374.3 29.0 225 38-276 3-242 (326)
128 PRK10253 iron-enterobactin tra 100.0 3.1E-45 6.6E-50 366.1 26.2 221 37-276 6-232 (265)
129 TIGR03415 ABC_choXWV_ATP choli 100.0 2.7E-45 5.9E-50 382.1 26.8 229 39-276 1-253 (382)
130 PRK14267 phosphate ABC transpo 100.0 7.2E-45 1.6E-49 360.6 28.0 218 38-276 4-236 (253)
131 TIGR02769 nickel_nikE nickel i 100.0 5.6E-45 1.2E-49 364.2 27.4 228 38-277 2-240 (265)
132 PRK13632 cbiO cobalt transport 100.0 4.9E-45 1.1E-49 365.8 26.9 219 37-276 6-230 (271)
133 TIGR03873 F420-0_ABC_ATP propo 100.0 4.1E-45 9E-50 363.2 26.0 218 39-275 2-224 (256)
134 PRK13633 cobalt transporter AT 100.0 7.6E-45 1.6E-49 366.1 28.0 233 38-288 4-247 (280)
135 cd03298 ABC_ThiQ_thiamine_tran 100.0 3.4E-45 7.4E-50 353.2 24.3 208 39-270 1-211 (211)
136 COG0444 DppD ABC-type dipeptid 100.0 3.3E-45 7.2E-50 364.3 24.7 224 39-276 2-242 (316)
137 TIGR03410 urea_trans_UrtE urea 100.0 4E-45 8.8E-50 357.3 24.8 212 39-275 1-219 (230)
138 COG4559 ABC-type hemin transpo 100.0 1.2E-45 2.6E-50 345.3 20.0 219 38-276 1-229 (259)
139 PRK10584 putative ABC transpor 100.0 8.3E-45 1.8E-49 354.6 26.9 214 37-269 5-227 (228)
140 PRK09984 phosphonate/organopho 100.0 7.4E-45 1.6E-49 362.6 26.3 219 38-275 4-240 (262)
141 PRK10744 pstB phosphate transp 100.0 1.3E-44 2.9E-49 360.4 28.0 218 36-276 11-243 (260)
142 PRK14250 phosphate ABC transpo 100.0 7.8E-45 1.7E-49 358.2 25.6 212 38-276 3-220 (241)
143 PRK13640 cbiO cobalt transport 100.0 1.7E-44 3.7E-49 363.9 28.6 220 37-277 4-232 (282)
144 PRK15093 antimicrobial peptide 100.0 1.5E-44 3.2E-49 372.0 28.7 227 38-276 3-247 (330)
145 PRK14235 phosphate transporter 100.0 2E-44 4.3E-49 360.7 28.7 220 38-275 19-249 (267)
146 PRK10771 thiQ thiamine transpo 100.0 9.6E-45 2.1E-49 355.3 25.8 214 39-276 2-218 (232)
147 PRK13645 cbiO cobalt transport 100.0 1.2E-44 2.7E-49 366.1 27.4 221 38-276 6-239 (289)
148 cd03300 ABC_PotA_N PotA is an 100.0 1.5E-44 3.3E-49 354.0 27.0 216 39-276 1-219 (232)
149 cd03267 ABC_NatA_like Similar 100.0 8.6E-45 1.9E-49 356.8 25.2 202 60-270 30-236 (236)
150 TIGR00968 3a0106s01 sulfate AB 100.0 1.4E-44 3.1E-49 355.4 26.7 216 39-276 1-219 (237)
151 PRK14245 phosphate ABC transpo 100.0 2.5E-44 5.4E-49 356.3 28.0 221 37-276 2-233 (250)
152 PRK15112 antimicrobial peptide 100.0 1.6E-44 3.5E-49 361.2 26.7 227 38-276 4-238 (267)
153 PRK14241 phosphate transporter 100.0 2.3E-44 5E-49 358.2 27.6 217 38-276 4-241 (258)
154 PRK13642 cbiO cobalt transport 100.0 3E-44 6.4E-49 361.3 28.6 219 38-276 4-228 (277)
155 TIGR02142 modC_ABC molybdenum 100.0 1.3E-44 2.7E-49 375.9 26.8 197 69-276 15-220 (354)
156 PRK11144 modC molybdate transp 100.0 1.2E-44 2.6E-49 375.7 26.5 207 39-276 2-217 (352)
157 PRK14269 phosphate ABC transpo 100.0 2.4E-44 5.1E-49 355.7 27.1 221 38-276 2-229 (246)
158 TIGR01277 thiQ thiamine ABC tr 100.0 1.8E-44 4E-49 348.9 25.5 209 39-271 1-212 (213)
159 COG4175 ProV ABC-type proline/ 100.0 2.5E-45 5.5E-50 360.6 19.6 231 37-276 3-253 (386)
160 PRK14274 phosphate ABC transpo 100.0 3.4E-44 7.4E-49 357.2 28.1 217 37-276 11-242 (259)
161 cd03299 ABC_ModC_like Archeal 100.0 3.3E-44 7.1E-49 352.4 27.3 215 39-276 1-218 (235)
162 PRK14256 phosphate ABC transpo 100.0 4.4E-44 9.5E-49 354.9 28.2 220 38-275 4-234 (252)
163 PRK13549 xylose transporter AT 100.0 1.6E-44 3.5E-49 392.0 27.3 219 38-275 5-230 (506)
164 PRK14270 phosphate ABC transpo 100.0 4.6E-44 1E-48 354.6 27.8 216 37-275 3-233 (251)
165 PRK14237 phosphate transporter 100.0 7.1E-44 1.5E-48 356.6 28.9 223 35-276 17-250 (267)
166 PRK13547 hmuV hemin importer A 100.0 2.7E-44 5.8E-49 360.6 25.4 218 39-275 2-242 (272)
167 PRK14259 phosphate ABC transpo 100.0 4.4E-44 9.5E-49 358.6 26.9 217 36-277 11-253 (269)
168 PRK10762 D-ribose transporter 100.0 2.4E-44 5.3E-49 390.2 27.0 219 38-275 4-228 (501)
169 PRK09700 D-allose transporter 100.0 2.5E-44 5.5E-49 390.9 27.1 219 38-275 5-232 (510)
170 PRK14272 phosphate ABC transpo 100.0 7.9E-44 1.7E-48 352.8 28.2 218 37-276 3-235 (252)
171 PRK11701 phnK phosphonate C-P 100.0 6E-44 1.3E-48 355.2 27.4 218 38-276 6-240 (258)
172 PRK14248 phosphate ABC transpo 100.0 8E-44 1.7E-48 356.3 28.2 216 38-276 21-251 (268)
173 PRK14262 phosphate ABC transpo 100.0 9.1E-44 2E-48 352.1 28.1 221 38-277 3-234 (250)
174 PRK14239 phosphate transporter 100.0 9E-44 1.9E-48 352.4 28.0 215 38-275 5-234 (252)
175 PRK14240 phosphate transporter 100.0 9.9E-44 2.1E-48 351.9 28.2 215 38-275 3-232 (250)
176 PRK14244 phosphate ABC transpo 100.0 7.8E-44 1.7E-48 352.9 27.0 220 38-275 5-235 (251)
177 cd03297 ABC_ModC_molybdenum_tr 100.0 5.6E-44 1.2E-48 345.6 25.0 190 69-270 16-214 (214)
178 PRK15439 autoinducer 2 ABC tra 100.0 6.2E-44 1.3E-48 387.7 27.6 212 38-275 11-227 (510)
179 TIGR01184 ntrCD nitrate transp 100.0 3.8E-44 8.2E-49 351.0 23.4 201 67-275 1-202 (230)
180 PRK14251 phosphate ABC transpo 100.0 1.7E-43 3.8E-48 350.3 27.7 215 38-275 4-233 (251)
181 PRK10418 nikD nickel transport 100.0 1.7E-43 3.7E-48 351.2 27.6 215 37-276 3-229 (254)
182 CHL00131 ycf16 sulfate ABC tra 100.0 2.5E-43 5.4E-48 349.2 28.4 220 38-275 7-239 (252)
183 cd03252 ABCC_Hemolysin The ABC 100.0 2.8E-44 6.1E-49 352.9 21.4 214 39-277 1-225 (237)
184 PRK14253 phosphate ABC transpo 100.0 2E-43 4.2E-48 349.5 27.2 219 38-275 3-231 (249)
185 cd03233 ABC_PDR_domain1 The pl 100.0 1.3E-43 2.8E-48 340.6 24.9 193 38-270 3-202 (202)
186 TIGR03608 L_ocin_972_ABC putat 100.0 8.6E-44 1.9E-48 341.9 23.6 197 42-261 2-206 (206)
187 PRK14236 phosphate transporter 100.0 3.3E-43 7.1E-48 352.7 28.6 220 37-275 24-254 (272)
188 COG1123 ATPase components of v 100.0 1.2E-43 2.6E-48 376.2 26.6 227 38-279 5-246 (539)
189 PRK14238 phosphate transporter 100.0 2.6E-43 5.6E-48 353.3 27.7 216 37-275 23-253 (271)
190 PRK14249 phosphate ABC transpo 100.0 2.9E-43 6.4E-48 348.8 27.7 219 38-275 4-233 (251)
191 PRK14260 phosphate ABC transpo 100.0 2.6E-43 5.7E-48 350.9 27.3 216 38-276 7-242 (259)
192 PRK14258 phosphate ABC transpo 100.0 3.4E-43 7.4E-48 350.5 28.0 221 38-276 7-244 (261)
193 TIGR02982 heterocyst_DevA ABC 100.0 1.9E-43 4.2E-48 343.4 25.4 210 39-266 2-219 (220)
194 PRK14271 phosphate ABC transpo 100.0 3.7E-43 8E-48 353.1 28.3 221 37-276 20-250 (276)
195 PRK14275 phosphate ABC transpo 100.0 3.2E-43 7E-48 355.3 28.0 217 37-276 38-269 (286)
196 TIGR02323 CP_lyasePhnK phospho 100.0 2.9E-43 6.2E-48 349.2 27.0 218 38-276 3-237 (253)
197 PRK14254 phosphate ABC transpo 100.0 3.5E-43 7.5E-48 354.9 28.0 215 36-275 37-267 (285)
198 cd03251 ABCC_MsbA MsbA is an e 100.0 5.2E-44 1.1E-48 350.1 21.2 215 39-278 1-226 (234)
199 PRK14261 phosphate ABC transpo 100.0 3.8E-43 8.3E-48 348.4 27.5 220 38-276 6-236 (253)
200 TIGR02770 nickel_nikD nickel i 100.0 1.7E-43 3.7E-48 346.1 24.4 202 66-276 1-214 (230)
201 PRK14255 phosphate ABC transpo 100.0 5.8E-43 1.2E-47 346.8 28.4 217 37-276 4-235 (252)
202 COG1123 ATPase components of v 100.0 1.4E-43 3.1E-48 375.7 25.5 230 37-276 279-518 (539)
203 PRK10419 nikE nickel transport 100.0 3.3E-43 7.1E-48 352.1 26.6 227 38-276 3-240 (268)
204 TIGR01257 rim_protein retinal- 100.0 2.1E-43 4.5E-48 421.7 29.8 227 37-284 1936-2165(2272)
205 PRK11288 araG L-arabinose tran 100.0 3.3E-43 7.1E-48 381.4 27.8 216 38-272 4-224 (501)
206 PRK09580 sufC cysteine desulfu 100.0 6.5E-43 1.4E-47 345.3 27.3 227 39-284 2-241 (248)
207 PRK15056 manganese/iron transp 100.0 3.6E-43 7.8E-48 352.5 25.8 219 38-275 6-228 (272)
208 COG4181 Predicted ABC-type tra 100.0 5.2E-44 1.1E-48 323.9 17.4 212 38-268 6-226 (228)
209 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 9.6E-44 2.1E-48 349.3 20.7 217 39-279 1-228 (238)
210 PRK14263 phosphate ABC transpo 100.0 9.7E-43 2.1E-47 347.4 28.2 220 36-276 6-244 (261)
211 PRK14265 phosphate ABC transpo 100.0 8.3E-43 1.8E-47 350.2 27.9 218 34-276 16-257 (274)
212 cd03213 ABCG_EPDR ABCG transpo 100.0 5.2E-43 1.1E-47 334.3 25.0 190 37-270 2-194 (194)
213 PRK10982 galactose/methyl gala 100.0 2.5E-43 5.4E-48 381.4 25.6 215 42-275 2-221 (491)
214 TIGR02633 xylG D-xylose ABC tr 100.0 4E-43 8.6E-48 380.7 27.2 218 39-275 2-228 (500)
215 PRK13538 cytochrome c biogenes 100.0 4.2E-43 9.1E-48 337.3 24.2 198 39-261 2-202 (204)
216 PRK10261 glutathione transport 100.0 5.7E-43 1.2E-47 388.3 28.8 230 37-276 312-552 (623)
217 cd03232 ABC_PDR_domain2 The pl 100.0 5.6E-43 1.2E-47 333.5 24.4 187 38-270 3-192 (192)
218 COG2274 SunT ABC-type bacterio 100.0 8.5E-44 1.8E-48 394.4 21.4 219 37-278 470-697 (709)
219 PRK14266 phosphate ABC transpo 100.0 1.1E-42 2.4E-47 344.3 27.2 221 37-276 2-233 (250)
220 PRK13543 cytochrome c biogenes 100.0 6E-43 1.3E-47 338.8 24.6 203 36-263 9-212 (214)
221 PRK14257 phosphate ABC transpo 100.0 1.3E-42 2.9E-47 356.9 28.6 222 37-276 79-312 (329)
222 cd03254 ABCC_Glucan_exporter_l 100.0 1.8E-43 4E-48 345.2 21.1 215 38-277 2-226 (229)
223 PRK14246 phosphate ABC transpo 100.0 1.3E-42 2.9E-47 345.7 27.1 217 38-276 10-240 (257)
224 PRK14243 phosphate transporter 100.0 1.2E-42 2.6E-47 347.2 26.8 218 38-276 10-247 (264)
225 PRK10247 putative ABC transpor 100.0 6.2E-43 1.3E-47 341.2 23.3 209 37-271 6-221 (225)
226 PRK11174 cysteine/glutathione 100.0 2.8E-43 6E-48 388.9 23.6 212 38-276 349-571 (588)
227 cd03245 ABCC_bacteriocin_expor 100.0 4.2E-43 9.1E-48 340.6 21.9 209 38-270 2-220 (220)
228 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 1E-42 2.3E-47 339.5 24.7 193 61-270 32-224 (224)
229 COG4598 HisP ABC-type histidin 100.0 4.9E-44 1.1E-48 326.4 14.2 218 38-276 6-240 (256)
230 TIGR03269 met_CoM_red_A2 methy 100.0 1E-42 2.2E-47 379.2 27.3 219 39-279 1-260 (520)
231 COG4525 TauB ABC-type taurine 100.0 6.7E-43 1.4E-47 322.8 21.6 221 38-279 3-226 (259)
232 PRK10261 glutathione transport 100.0 8.8E-43 1.9E-47 386.7 26.7 222 38-276 12-257 (623)
233 PRK14264 phosphate ABC transpo 100.0 3.1E-42 6.7E-47 351.2 28.5 223 37-276 44-288 (305)
234 cd03231 ABC_CcmA_heme_exporter 100.0 1.1E-42 2.5E-47 333.6 23.1 195 39-261 1-198 (201)
235 COG4988 CydD ABC-type transpor 100.0 6.4E-43 1.4E-47 369.4 23.3 216 35-276 317-542 (559)
236 KOG0058 Peptide exporter, ABC 100.0 3.1E-43 6.8E-48 378.2 21.0 219 38-276 465-690 (716)
237 cd03253 ABCC_ATM1_transporter 100.0 6.4E-43 1.4E-47 342.9 21.4 212 39-276 1-223 (236)
238 COG4604 CeuD ABC-type enteroch 100.0 3.1E-44 6.8E-49 332.2 11.4 220 38-277 1-225 (252)
239 PRK14252 phosphate ABC transpo 100.0 4.5E-42 9.8E-47 343.1 27.8 217 36-276 14-248 (265)
240 PRK15134 microcin C ABC transp 100.0 2.3E-42 5E-47 377.1 28.0 222 38-276 5-245 (529)
241 TIGR01257 rim_protein retinal- 100.0 2.1E-42 4.5E-47 413.2 29.8 224 36-280 926-1152(2272)
242 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 7.8E-43 1.7E-47 391.8 24.4 211 38-276 451-672 (686)
243 PRK03695 vitamin B12-transport 100.0 1.6E-42 3.4E-47 343.3 23.6 199 66-275 11-220 (248)
244 PRK13546 teichoic acids export 100.0 1E-41 2.2E-46 340.4 29.4 224 37-278 3-233 (264)
245 TIGR03269 met_CoM_red_A2 methy 100.0 2.4E-42 5.3E-47 376.2 26.9 223 37-277 278-517 (520)
246 PRK13549 xylose transporter AT 100.0 1.1E-42 2.5E-47 377.6 24.1 222 38-275 259-492 (506)
247 cd03230 ABC_DR_subfamily_A Thi 100.0 2.1E-42 4.5E-47 324.2 22.4 170 39-266 1-173 (173)
248 PRK15134 microcin C ABC transp 100.0 2.1E-42 4.5E-47 377.4 25.8 230 37-276 274-514 (529)
249 PRK11176 lipid transporter ATP 100.0 9.1E-43 2E-47 384.4 22.8 215 38-276 341-566 (582)
250 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.9E-42 6.3E-47 330.6 23.4 192 39-284 1-200 (200)
251 TIGR01189 ccmA heme ABC export 100.0 2.8E-42 6.1E-47 329.9 22.9 194 39-260 1-197 (198)
252 PRK09544 znuC high-affinity zi 100.0 3.6E-42 7.8E-47 341.4 23.9 202 38-276 4-208 (251)
253 PRK09700 D-allose transporter 100.0 2.8E-42 6E-47 374.9 24.5 215 37-272 264-493 (510)
254 COG1129 MglA ABC-type sugar tr 100.0 4.5E-42 9.8E-47 362.0 25.3 217 36-271 6-228 (500)
255 TIGR02324 CP_lyasePhnL phospho 100.0 7.5E-42 1.6E-46 332.9 24.6 209 39-262 2-223 (224)
256 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.4E-42 3.1E-47 391.1 22.5 213 38-277 477-700 (710)
257 PRK10790 putative multidrug tr 100.0 4E-42 8.6E-47 380.0 25.5 212 38-276 340-562 (592)
258 PRK13539 cytochrome c biogenes 100.0 5.2E-42 1.1E-46 330.5 22.9 198 38-263 2-200 (207)
259 PRK11160 cysteine/glutathione 100.0 4.9E-42 1.1E-46 377.9 25.8 216 37-277 337-562 (574)
260 cd03289 ABCC_CFTR2 The CFTR su 100.0 4.2E-42 9.1E-47 344.9 23.0 214 38-277 2-225 (275)
261 PRK10938 putative molybdenum t 100.0 2.5E-42 5.4E-47 373.5 22.8 208 38-275 3-222 (490)
262 cd03248 ABCC_TAP TAP, the Tran 100.0 1.3E-42 2.8E-47 338.7 18.6 210 38-266 11-226 (226)
263 TIGR01166 cbiO cobalt transpor 100.0 5.1E-42 1.1E-46 325.9 21.7 177 63-248 4-188 (190)
264 TIGR02633 xylG D-xylose ABC tr 100.0 4.5E-42 9.8E-47 372.4 24.1 221 37-273 256-488 (500)
265 cd03244 ABCC_MRP_domain2 Domai 100.0 5.5E-42 1.2E-46 333.0 21.9 208 38-271 2-220 (221)
266 TIGR03375 type_I_sec_LssB type 100.0 4.4E-42 9.5E-47 386.2 24.4 216 38-278 463-689 (694)
267 cd03229 ABC_Class3 This class 100.0 5.9E-42 1.3E-46 322.5 21.0 171 39-265 1-178 (178)
268 TIGR01193 bacteriocin_ABC ABC- 100.0 3.3E-42 7.1E-47 388.0 23.0 214 38-277 473-697 (708)
269 PRK13540 cytochrome c biogenes 100.0 8.7E-42 1.9E-46 327.1 22.2 192 39-258 2-196 (200)
270 COG1132 MdlB ABC-type multidru 100.0 2.8E-42 6.1E-47 379.4 21.5 217 37-277 327-552 (567)
271 TIGR00958 3a01208 Conjugate Tr 100.0 7.3E-42 1.6E-46 384.9 24.3 214 38-277 478-702 (711)
272 COG4161 ArtP ABC-type arginine 100.0 4.2E-42 9E-47 308.8 17.6 215 38-273 2-226 (242)
273 KOG0057 Mitochondrial Fe/S clu 100.0 5.6E-42 1.2E-46 357.6 21.3 215 36-277 349-574 (591)
274 cd03288 ABCC_SUR2 The SUR doma 100.0 1.5E-41 3.2E-46 338.0 21.9 214 38-277 19-243 (257)
275 PRK13545 tagH teichoic acids e 100.0 7.5E-41 1.6E-45 356.2 28.5 214 38-279 21-234 (549)
276 cd03246 ABCC_Protease_Secretio 100.0 1.5E-41 3.3E-46 318.3 20.6 169 39-266 1-173 (173)
277 PRK10762 D-ribose transporter 100.0 1.8E-41 3.9E-46 367.7 24.0 204 66-275 267-482 (501)
278 cd03247 ABCC_cytochrome_bd The 100.0 2.2E-41 4.9E-46 318.5 21.2 175 39-270 1-178 (178)
279 TIGR03771 anch_rpt_ABC anchore 100.0 2.1E-41 4.5E-46 330.1 21.6 197 72-276 1-200 (223)
280 PRK13657 cyclic beta-1,2-gluca 100.0 2E-41 4.4E-46 374.1 24.4 213 38-276 334-557 (588)
281 PRK11288 araG L-arabinose tran 100.0 1.7E-41 3.7E-46 367.9 23.3 205 65-275 267-483 (501)
282 cd03215 ABC_Carb_Monos_II This 100.0 3E-41 6.5E-46 318.8 21.4 171 38-266 4-182 (182)
283 TIGR01842 type_I_sec_PrtD type 100.0 2E-41 4.3E-46 370.9 22.9 217 38-276 316-541 (544)
284 KOG0055 Multidrug/pheromone ex 100.0 1.1E-41 2.4E-46 384.3 21.2 221 37-277 349-576 (1228)
285 cd03369 ABCC_NFT1 Domain 2 of 100.0 7.2E-41 1.6E-45 322.3 23.7 198 38-272 6-207 (207)
286 COG4987 CydC ABC-type transpor 100.0 5.8E-42 1.2E-46 357.3 17.0 215 38-277 336-561 (573)
287 cd03214 ABC_Iron-Siderophores_ 100.0 1.9E-41 4.2E-46 319.6 18.8 175 40-270 1-180 (180)
288 PRK15439 autoinducer 2 ABC tra 100.0 3.7E-41 8E-46 366.0 23.4 204 66-275 278-490 (510)
289 TIGR01846 type_I_sec_HlyB type 100.0 4.2E-41 9.1E-46 378.2 24.6 216 37-277 454-680 (694)
290 TIGR02203 MsbA_lipidA lipid A 100.0 2.6E-41 5.7E-46 371.8 22.4 215 38-276 330-555 (571)
291 COG0396 sufC Cysteine desulfur 100.0 1.5E-40 3.1E-45 315.3 24.2 230 37-286 2-242 (251)
292 TIGR01187 potA spermidine/putr 100.0 7.2E-41 1.6E-45 343.9 23.1 186 82-276 1-189 (325)
293 COG4172 ABC-type uncharacteriz 100.0 1.5E-40 3.2E-45 335.4 24.3 234 35-277 273-516 (534)
294 TIGR02204 MsbA_rel ABC transpo 100.0 5.9E-41 1.3E-45 369.5 22.5 215 38-276 337-562 (576)
295 PRK10789 putative multidrug tr 100.0 1E-40 2.2E-45 367.2 23.1 214 38-276 313-537 (569)
296 COG4148 ModC ABC-type molybdat 100.0 1.4E-41 3.1E-46 329.1 14.2 194 69-277 16-218 (352)
297 COG3845 ABC-type uncharacteriz 100.0 1.6E-40 3.5E-45 344.1 22.6 216 37-271 3-223 (501)
298 TIGR01192 chvA glucan exporter 100.0 2.8E-40 6.1E-45 364.6 26.0 214 38-277 334-558 (585)
299 PRK13541 cytochrome c biogenes 100.0 3.5E-40 7.5E-45 314.9 22.5 191 39-258 2-192 (195)
300 cd03250 ABCC_MRP_domain1 Domai 100.0 2.1E-40 4.6E-45 318.3 21.1 196 39-265 1-204 (204)
301 cd03228 ABCC_MRP_Like The MRP 100.0 2.2E-40 4.7E-45 309.9 20.2 167 39-265 1-171 (171)
302 cd03216 ABC_Carb_Monos_I This 100.0 5.7E-40 1.2E-44 305.0 22.1 157 39-268 1-162 (163)
303 cd03290 ABCC_SUR1_N The SUR do 100.0 6.6E-40 1.4E-44 318.0 21.9 200 40-265 2-218 (218)
304 PRK10535 macrolide transporter 100.0 1.8E-39 3.9E-44 361.6 28.5 220 38-276 4-231 (648)
305 PRK10982 galactose/methyl gala 100.0 5.2E-40 1.1E-44 355.5 23.0 216 37-273 249-476 (491)
306 PRK15064 ABC transporter ATP-b 100.0 9.7E-40 2.1E-44 356.5 24.6 210 38-276 1-241 (530)
307 TIGR02868 CydC thiol reductant 100.0 3.5E-40 7.5E-45 359.9 20.5 187 37-247 333-529 (529)
308 COG1119 ModF ABC-type molybden 100.0 2.8E-40 6.1E-45 316.7 17.2 218 35-271 28-256 (257)
309 PRK15177 Vi polysaccharide exp 100.0 2.2E-39 4.8E-44 313.8 22.5 195 65-281 1-196 (213)
310 PRK11819 putative ABC transpor 100.0 2.6E-39 5.7E-44 354.9 26.0 210 36-274 4-247 (556)
311 PTZ00265 multidrug resistance 100.0 3.5E-40 7.6E-45 392.5 20.5 216 38-276 1165-1451(1466)
312 PRK10938 putative molybdenum t 100.0 1E-39 2.2E-44 353.1 22.4 215 37-271 259-486 (490)
313 cd03291 ABCC_CFTR1 The CFTR su 100.0 4.6E-39 1E-43 324.0 25.3 204 35-277 36-247 (282)
314 cd03223 ABCD_peroxisomal_ALDP 100.0 3.1E-39 6.7E-44 300.9 21.3 163 39-264 1-163 (166)
315 PRK15064 ABC transporter ATP-b 100.0 2.6E-39 5.7E-44 353.1 23.8 203 37-276 318-524 (530)
316 COG4619 ABC-type uncharacteriz 100.0 7.5E-41 1.6E-45 302.5 9.5 192 63-266 15-212 (223)
317 KOG0055 Multidrug/pheromone ex 100.0 1.4E-39 3E-44 367.4 21.8 220 38-277 987-1213(1228)
318 TIGR02857 CydD thiol reductant 100.0 1.2E-39 2.5E-44 355.8 20.1 199 38-261 320-529 (529)
319 COG4586 ABC-type uncharacteriz 100.0 7.8E-40 1.7E-44 316.4 15.9 235 38-281 3-250 (325)
320 PRK10522 multidrug transporter 100.0 4.5E-39 9.7E-44 352.6 23.8 204 38-269 322-530 (547)
321 PLN03232 ABC transporter C fam 100.0 4.4E-39 9.6E-44 385.6 25.6 213 38-276 1234-1457(1495)
322 PLN03130 ABC transporter C fam 100.0 4.1E-39 8.8E-44 386.7 25.3 214 38-277 1237-1461(1622)
323 COG4674 Uncharacterized ABC-ty 100.0 1.4E-39 2.9E-44 300.9 15.9 220 37-276 4-234 (249)
324 cd03237 ABC_RNaseL_inhibitor_d 100.0 9.8E-39 2.1E-43 315.8 23.2 188 66-274 9-204 (246)
325 COG4618 ArpD ABC-type protease 100.0 3.5E-39 7.5E-44 333.8 20.5 224 36-281 332-564 (580)
326 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 8.1E-39 1.8E-43 350.8 24.7 209 38-275 4-246 (552)
327 COG4608 AppF ABC-type oligopep 100.0 5.7E-39 1.2E-43 313.5 20.7 195 37-277 3-199 (268)
328 COG4172 ABC-type uncharacteriz 100.0 9.7E-39 2.1E-43 322.3 21.7 225 38-276 6-246 (534)
329 KOG0056 Heavy metal exporter H 100.0 2.2E-39 4.8E-44 332.1 16.3 232 25-278 524-762 (790)
330 TIGR01194 cyc_pep_trnsptr cycl 100.0 1.7E-38 3.7E-43 348.5 23.7 210 37-269 336-551 (555)
331 PRK11819 putative ABC transpor 100.0 3.2E-38 7E-43 346.3 25.2 205 37-275 323-531 (556)
332 TIGR00957 MRP_assoc_pro multi 100.0 1.9E-38 4.2E-43 380.7 24.8 214 38-277 1284-1508(1522)
333 PTZ00243 ABC transporter; Prov 100.0 1.9E-38 4.2E-43 380.2 24.4 214 38-277 1308-1533(1560)
334 PRK13409 putative ATPase RIL; 100.0 5.1E-38 1.1E-42 345.4 24.4 200 36-273 338-538 (590)
335 PTZ00265 multidrug resistance 100.0 2.7E-38 5.9E-43 376.4 24.0 213 38-264 382-655 (1466)
336 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 6.4E-38 1.4E-42 343.7 24.8 204 37-274 321-528 (552)
337 cd03236 ABC_RNaseL_inhibitor_d 100.0 3.8E-38 8.3E-43 313.1 19.0 189 65-270 15-220 (255)
338 PRK10636 putative ABC transpor 100.0 2.1E-37 4.6E-42 344.3 24.7 203 37-277 311-517 (638)
339 COG1134 TagH ABC-type polysacc 100.0 7.4E-37 1.6E-41 293.5 24.1 229 37-282 2-241 (249)
340 TIGR01271 CFTR_protein cystic 100.0 2.1E-37 4.5E-42 370.8 25.0 213 38-277 1217-1440(1490)
341 KOG0059 Lipid exporter ABCA1 a 100.0 8.1E-38 1.8E-42 358.0 19.7 225 38-284 564-793 (885)
342 PRK11147 ABC transporter ATPas 100.0 4.9E-37 1.1E-41 341.6 24.1 205 37-275 318-526 (635)
343 COG1101 PhnK ABC-type uncharac 100.0 1.7E-37 3.6E-42 291.2 16.6 218 39-270 2-231 (263)
344 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 7.3E-37 1.6E-41 278.5 19.7 144 39-265 1-144 (144)
345 PRK10636 putative ABC transpor 100.0 1.1E-36 2.5E-41 338.4 23.7 207 38-274 1-233 (638)
346 COG4167 SapF ABC-type antimicr 100.0 5E-37 1.1E-41 281.1 17.0 227 38-276 4-238 (267)
347 PLN03073 ABC transporter F fam 100.0 3.1E-36 6.6E-41 337.2 26.3 206 37-277 507-714 (718)
348 cd03222 ABC_RNaseL_inhibitor T 100.0 1.7E-36 3.7E-41 285.0 19.4 145 63-273 12-159 (177)
349 cd03238 ABC_UvrA The excision 100.0 3.9E-36 8.5E-41 282.3 19.7 158 63-267 7-167 (176)
350 TIGR00954 3a01203 Peroxysomal 100.0 2.6E-36 5.6E-41 336.7 21.8 198 38-262 451-652 (659)
351 PRK11147 ABC transporter ATPas 100.0 6.2E-36 1.4E-40 332.8 24.5 205 38-274 3-240 (635)
352 PLN03232 ABC transporter C fam 100.0 4.4E-36 9.6E-41 359.9 23.2 206 38-276 614-827 (1495)
353 PLN03130 ABC transporter C fam 100.0 9.3E-36 2E-40 357.8 23.6 205 38-276 614-827 (1622)
354 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.7E-35 6E-40 271.3 20.2 152 41-265 2-157 (157)
355 COG5265 ATM1 ABC-type transpor 100.0 8.8E-36 1.9E-40 302.6 17.1 217 38-278 262-487 (497)
356 PRK13409 putative ATPase RIL; 100.0 1.2E-35 2.5E-40 326.7 19.3 181 64-264 87-287 (590)
357 COG4136 ABC-type uncharacteriz 100.0 1.4E-35 3E-40 263.9 14.5 190 38-249 2-197 (213)
358 TIGR00957 MRP_assoc_pro multi 100.0 8.8E-35 1.9E-39 349.2 23.5 209 38-276 636-849 (1522)
359 COG4107 PhnK ABC-type phosphon 100.0 3.5E-35 7.6E-40 267.1 14.6 215 38-276 6-240 (258)
360 TIGR01271 CFTR_protein cystic 100.0 6.3E-34 1.4E-38 340.9 23.9 193 64-276 439-635 (1490)
361 COG4133 CcmA ABC-type transpor 100.0 3.2E-34 6.9E-39 264.4 15.5 188 38-249 2-192 (209)
362 COG0488 Uup ATPase components 100.0 7.6E-34 1.6E-38 306.1 20.4 206 38-273 3-236 (530)
363 PLN03073 ABC transporter F fam 100.0 5.8E-34 1.3E-38 318.9 17.5 216 36-274 175-428 (718)
364 PTZ00243 ABC transporter; Prov 100.0 3E-33 6.5E-38 335.6 21.9 191 63-276 672-869 (1560)
365 cd03270 ABC_UvrA_I The excisio 100.0 1.7E-32 3.7E-37 268.0 20.1 190 63-270 7-226 (226)
366 COG4778 PhnL ABC-type phosphon 100.0 4.3E-33 9.4E-38 252.6 14.0 213 37-263 3-227 (235)
367 PF00005 ABC_tran: ABC transpo 100.0 9.6E-33 2.1E-37 247.7 13.4 133 67-216 1-137 (137)
368 KOG0054 Multidrug resistance-a 100.0 4.9E-32 1.1E-36 312.7 21.6 215 37-277 1137-1362(1381)
369 KOG0054 Multidrug resistance-a 100.0 1.1E-31 2.3E-36 309.9 23.4 208 37-277 517-731 (1381)
370 cd03271 ABC_UvrA_II The excisi 100.0 2.5E-31 5.5E-36 264.1 19.6 193 64-272 8-261 (261)
371 COG1129 MglA ABC-type sugar tr 100.0 3.2E-30 7E-35 272.3 21.7 214 36-272 261-485 (500)
372 COG4138 BtuD ABC-type cobalami 100.0 4.6E-32 1E-36 247.0 6.6 196 66-276 14-220 (248)
373 COG0488 Uup ATPase components 100.0 3.5E-30 7.6E-35 277.7 21.4 203 36-276 319-524 (530)
374 cd03278 ABC_SMC_barmotin Barmo 100.0 8.4E-31 1.8E-35 250.8 13.1 163 68-263 14-190 (197)
375 cd03272 ABC_SMC3_euk Eukaryoti 100.0 9.9E-30 2.2E-34 250.5 12.9 186 61-262 12-234 (243)
376 cd03274 ABC_SMC4_euk Eukaryoti 100.0 1.9E-30 4.2E-35 251.1 2.0 180 61-263 14-204 (212)
377 cd03273 ABC_SMC2_euk Eukaryoti 100.0 9.4E-29 2E-33 245.2 9.8 179 74-262 23-242 (251)
378 COG3845 ABC-type uncharacteriz 100.0 4.4E-27 9.6E-32 244.3 21.5 221 36-274 255-489 (501)
379 cd03279 ABC_sbcCD SbcCD and ot 99.9 3.6E-27 7.8E-32 228.3 15.3 178 68-265 18-210 (213)
380 cd03240 ABC_Rad50 The catalyti 99.9 1.7E-27 3.6E-32 229.3 12.7 166 69-264 15-199 (204)
381 PRK00635 excinuclease ABC subu 99.9 1.5E-26 3.2E-31 273.8 23.1 138 132-277 759-906 (1809)
382 COG4615 PvdE ABC-type sideroph 99.9 9.7E-28 2.1E-32 242.0 10.2 204 38-270 322-530 (546)
383 COG4178 ABC-type uncharacteriz 99.9 3.4E-26 7.3E-31 246.2 17.8 197 36-262 390-587 (604)
384 PRK00349 uvrA excinuclease ABC 99.9 7.6E-26 1.7E-30 257.8 21.3 125 136-276 792-926 (943)
385 COG4170 SapD ABC-type antimicr 99.9 1.6E-26 3.4E-31 216.3 10.8 228 38-277 3-248 (330)
386 TIGR00630 uvra excinuclease AB 99.9 1.2E-24 2.5E-29 247.7 22.3 125 135-275 789-923 (924)
387 KOG0927 Predicted transporter 99.9 8.3E-26 1.8E-30 236.0 10.9 204 36-275 387-594 (614)
388 cd03276 ABC_SMC6_euk Eukaryoti 99.9 1.1E-24 2.3E-29 208.8 15.0 169 67-265 12-192 (198)
389 KOG0927 Predicted transporter 99.9 7E-25 1.5E-29 229.1 13.4 211 38-275 75-307 (614)
390 COG1245 Predicted ATPase, RNas 99.9 2.2E-24 4.7E-29 221.3 16.5 174 66-262 356-530 (591)
391 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.8E-24 3.9E-29 214.2 11.3 179 75-263 21-233 (247)
392 KOG0060 Long-chain acyl-CoA tr 99.9 1.2E-22 2.6E-27 213.8 17.4 205 36-263 431-641 (659)
393 KOG2355 Predicted ABC-type tra 99.9 2.4E-22 5.1E-27 187.9 15.8 211 37-278 12-238 (291)
394 KOG0062 ATPase component of AB 99.9 3.4E-23 7.3E-28 215.5 10.7 203 37-275 79-283 (582)
395 cd03280 ABC_MutS2 MutS2 homolo 99.9 2.8E-22 6.1E-27 192.3 10.8 146 67-270 17-172 (200)
396 cd03277 ABC_SMC5_euk Eukaryoti 99.9 1.4E-21 3.1E-26 189.3 14.9 80 185-265 124-211 (213)
397 KOG0066 eIF2-interacting prote 99.9 1.1E-21 2.5E-26 199.9 12.3 191 36-263 584-776 (807)
398 COG1245 Predicted ATPase, RNas 99.9 5.2E-22 1.1E-26 203.9 9.5 172 74-263 97-288 (591)
399 KOG0062 ATPase component of AB 99.9 4.5E-21 9.8E-26 199.7 15.5 205 36-275 360-567 (582)
400 cd03283 ABC_MutS-like MutS-lik 99.8 6E-21 1.3E-25 183.0 9.8 147 64-261 14-163 (199)
401 COG2401 ABC-type ATPase fused 99.8 9.9E-21 2.1E-25 192.5 10.8 187 59-267 391-588 (593)
402 cd03239 ABC_SMC_head The struc 99.8 6.5E-20 1.4E-24 172.9 15.5 74 188-263 95-172 (178)
403 cd03285 ABC_MSH2_euk MutS2 hom 99.8 2.4E-20 5.2E-25 181.8 9.2 153 63-271 16-175 (222)
404 cd03241 ABC_RecN RecN ATPase i 99.8 1.5E-19 3.2E-24 182.0 15.1 75 187-264 170-248 (276)
405 PRK00635 excinuclease ABC subu 99.8 6.1E-19 1.3E-23 209.6 21.8 197 66-277 1505-1796(1809)
406 cd03227 ABC_Class2 ABC-type Cl 99.8 1E-19 2.2E-24 168.8 11.4 140 68-263 12-155 (162)
407 KOG0064 Peroxisomal long-chain 99.8 1.6E-19 3.4E-24 188.2 11.8 171 63-249 494-671 (728)
408 COG0178 UvrA Excinuclease ATPa 99.8 1.5E-18 3.3E-23 189.0 19.3 128 135-277 783-919 (935)
409 PRK00349 uvrA excinuclease ABC 99.8 1.4E-18 3E-23 198.6 14.9 135 134-276 435-584 (943)
410 TIGR00630 uvra excinuclease AB 99.8 2.1E-18 4.5E-23 196.8 15.4 135 134-276 433-582 (924)
411 cd03243 ABC_MutS_homologs The 99.8 6.7E-19 1.5E-23 169.1 7.2 155 69-275 21-177 (202)
412 cd03242 ABC_RecF RecF is a rec 99.8 1.8E-17 3.9E-22 166.3 16.5 76 186-266 182-269 (270)
413 KOG0066 eIF2-interacting prote 99.7 7.1E-19 1.5E-23 179.6 3.7 214 35-272 261-494 (807)
414 cd03282 ABC_MSH4_euk MutS4 hom 99.7 6.5E-18 1.4E-22 162.6 8.8 137 63-248 15-152 (204)
415 TIGR02858 spore_III_AA stage I 99.7 1.3E-16 2.8E-21 159.6 11.2 139 78-275 112-267 (270)
416 cd03284 ABC_MutS1 MutS1 homolo 99.7 2.1E-16 4.6E-21 153.5 11.2 158 63-277 17-181 (216)
417 KOG0063 RNAse L inhibitor, ABC 99.7 4.6E-16 1E-20 159.1 12.9 177 63-262 348-531 (592)
418 smart00534 MUTSac ATPase domai 99.6 1.3E-15 2.8E-20 144.4 4.7 78 187-267 61-140 (185)
419 PRK00064 recF recombination pr 99.6 2.1E-13 4.6E-18 142.4 19.9 78 185-266 271-359 (361)
420 cd03281 ABC_MSH5_euk MutS5 hom 99.5 6.9E-14 1.5E-18 135.6 12.1 132 65-249 17-156 (213)
421 PF02463 SMC_N: RecF/RecN/SMC 99.5 9.3E-15 2E-19 141.8 5.0 88 161-262 121-212 (220)
422 KOG0063 RNAse L inhibitor, ABC 99.5 5.4E-14 1.2E-18 144.2 9.0 188 74-280 97-310 (592)
423 PF01061 ABC2_membrane: ABC-2 99.5 2.3E-15 5E-20 142.9 -1.5 132 314-447 77-210 (210)
424 TIGR01069 mutS2 MutS2 family p 99.5 6.3E-14 1.4E-18 158.5 9.8 131 69-249 313-447 (771)
425 cd00820 PEPCK_HprK Phosphoenol 99.5 5.1E-14 1.1E-18 121.1 6.7 73 64-145 2-78 (107)
426 cd03287 ABC_MSH3_euk MutS3 hom 99.4 6.8E-13 1.5E-17 129.3 12.6 133 64-248 18-155 (222)
427 PRK07721 fliI flagellum-specif 99.4 2E-12 4.4E-17 137.4 15.5 171 64-274 146-340 (438)
428 PTZ00132 GTP-binding nuclear p 99.4 2.4E-13 5.3E-18 131.4 7.5 45 191-235 156-205 (215)
429 TIGR00634 recN DNA repair prot 99.4 1.2E-12 2.5E-17 144.5 9.7 77 186-265 439-519 (563)
430 TIGR03062 pip_yhgE_Cterm YhgE/ 99.4 2.1E-11 4.6E-16 117.2 16.5 148 329-504 58-207 (208)
431 PRK00409 recombination and DNA 99.3 1.4E-12 2.9E-17 148.2 8.0 81 186-269 389-470 (782)
432 PRK10869 recombination and rep 99.3 3.4E-12 7.3E-17 140.1 10.3 76 186-264 429-508 (553)
433 cd01128 rho_factor Transcripti 99.3 4.4E-12 9.4E-17 125.7 9.9 176 72-267 11-212 (249)
434 PF13304 AAA_21: AAA domain; P 99.3 1.8E-12 4E-17 124.7 5.8 63 186-248 235-300 (303)
435 PHA02562 46 endonuclease subun 99.3 4.5E-12 9.7E-17 139.7 9.6 79 184-266 465-555 (562)
436 TIGR00618 sbcc exonuclease Sbc 99.3 6.6E-12 1.4E-16 147.7 11.2 80 184-264 947-1036(1042)
437 PRK08533 flagellar accessory p 99.3 2.5E-11 5.3E-16 119.2 13.3 150 73-262 20-184 (230)
438 cd01124 KaiC KaiC is a circadi 99.3 2.7E-11 5.9E-16 113.9 11.9 145 80-262 2-163 (187)
439 cd03286 ABC_MSH6_euk MutS6 hom 99.3 1.5E-11 3.3E-16 119.6 9.2 134 63-248 16-154 (218)
440 COG0178 UvrA Excinuclease ATPa 99.2 1E-10 2.2E-15 128.5 15.3 136 134-277 427-577 (935)
441 PRK13695 putative NTPase; Prov 99.2 4.5E-12 9.8E-17 118.7 4.1 78 187-270 78-157 (174)
442 TIGR02788 VirB11 P-type DNA tr 99.2 3.8E-11 8.2E-16 122.9 9.8 142 70-276 137-280 (308)
443 cd01120 RecA-like_NTPases RecA 99.2 9.8E-11 2.1E-15 106.4 9.3 64 187-250 67-140 (165)
444 PRK03918 chromosome segregatio 99.2 7.7E-11 1.7E-15 136.6 9.8 77 184-262 785-867 (880)
445 PRK13830 conjugal transfer pro 99.1 9.5E-10 2.1E-14 126.1 17.5 69 203-271 650-727 (818)
446 COG3910 Predicted ATPase [Gene 99.1 3.5E-10 7.5E-15 105.4 10.3 78 185-264 127-204 (233)
447 PRK10246 exonuclease subunit S 99.1 1.9E-10 4E-15 135.2 10.8 79 184-263 946-1032(1047)
448 TIGR01247 drrB daunorubicin re 99.1 3E-09 6.6E-14 104.2 17.6 146 328-498 87-234 (236)
449 PRK06793 fliI flagellum-specif 99.1 3E-10 6.5E-15 120.2 10.8 155 64-271 144-305 (432)
450 TIGR00025 Mtu_efflux ABC trans 99.1 4.4E-09 9.6E-14 103.0 17.1 148 329-501 77-229 (232)
451 PRK01156 chromosome segregatio 99.1 9.8E-10 2.1E-14 127.8 13.3 77 184-262 798-883 (895)
452 TIGR00606 rad50 rad50. This fa 99.0 5.1E-10 1.1E-14 134.5 9.6 69 186-255 1198-1277(1311)
453 PRK06067 flagellar accessory p 99.0 3.2E-09 7E-14 104.2 12.5 161 66-262 13-186 (234)
454 cd01131 PilT Pilus retraction 99.0 1.7E-09 3.6E-14 103.8 9.9 57 197-262 66-122 (198)
455 TIGR02168 SMC_prok_B chromosom 99.0 7.6E-10 1.7E-14 131.4 7.8 76 184-262 1086-1165(1179)
456 PRK06995 flhF flagellar biosyn 99.0 1.9E-09 4.1E-14 115.7 9.9 151 65-245 244-400 (484)
457 TIGR03238 dnd_assoc_3 dnd syst 98.9 5.4E-10 1.2E-14 118.3 4.7 51 64-116 19-70 (504)
458 cd01125 repA Hexameric Replica 98.9 5.7E-09 1.2E-13 102.8 11.5 136 77-248 1-160 (239)
459 smart00382 AAA ATPases associa 98.9 6.8E-08 1.5E-12 84.3 15.0 117 76-245 1-124 (148)
460 TIGR02169 SMC_prok_A chromosom 98.9 3.8E-09 8.3E-14 125.6 8.5 77 184-263 1071-1151(1164)
461 PRK02224 chromosome segregatio 98.9 5.1E-09 1.1E-13 121.6 9.2 78 185-264 779-869 (880)
462 TIGR01291 nodJ ABC-2 type tran 98.9 1.5E-07 3.3E-12 93.6 18.2 159 318-502 81-249 (253)
463 TIGR02655 circ_KaiC circadian 98.8 1.9E-10 4.1E-15 124.7 -4.1 166 66-262 9-190 (484)
464 PRK13891 conjugal transfer pro 98.8 9.1E-08 2E-12 110.5 15.0 71 198-268 680-752 (852)
465 TIGR01420 pilT_fam pilus retra 98.7 5.7E-08 1.2E-12 101.0 11.4 123 74-261 119-242 (343)
466 TIGR01026 fliI_yscN ATPase Fli 98.7 4.4E-08 9.6E-13 104.5 10.3 175 63-275 150-346 (440)
467 cd01130 VirB11-like_ATPase Typ 98.7 4.3E-08 9.2E-13 93.0 8.1 83 66-148 14-99 (186)
468 PRK07196 fliI flagellum-specif 98.7 2E-08 4.3E-13 106.6 6.2 173 63-270 142-334 (434)
469 TIGR03881 KaiC_arch_4 KaiC dom 98.7 7.9E-09 1.7E-13 100.9 2.6 48 66-113 8-57 (229)
470 TIGR00611 recf recF protein. A 98.7 3.5E-08 7.6E-13 103.3 7.2 60 186-248 274-342 (365)
471 PRK06002 fliI flagellum-specif 98.6 1.1E-07 2.3E-12 101.2 9.3 83 36-131 137-230 (450)
472 PRK14079 recF recombination pr 98.6 8.2E-08 1.8E-12 100.0 8.1 76 187-270 263-347 (349)
473 TIGR01248 drrC daunorubicin re 98.6 1.6E-06 3.4E-11 79.8 13.9 126 315-443 17-146 (152)
474 cd02023 UMPK Uridine monophosp 98.5 7.4E-08 1.6E-12 92.0 5.2 112 79-220 1-113 (198)
475 COG0419 SbcC ATPase involved i 98.5 2.5E-07 5.5E-12 107.8 10.2 78 184-263 812-897 (908)
476 PRK15066 inner membrane transp 98.5 5.1E-06 1.1E-10 82.7 18.1 153 328-506 101-255 (257)
477 TIGR03861 phenyl_ABC_PedC alco 98.5 5.2E-06 1.1E-10 82.4 18.1 147 328-502 99-250 (253)
478 PLN03210 Resistant to P. syrin 98.5 5.4E-07 1.2E-11 107.6 12.8 163 69-285 199-366 (1153)
479 PRK13898 type IV secretion sys 98.5 2.4E-06 5.3E-11 98.4 17.5 48 202-249 639-687 (800)
480 COG0842 ABC-type multidrug tra 98.5 5.2E-06 1.1E-10 82.0 17.3 151 331-505 131-284 (286)
481 PRK05399 DNA mismatch repair p 98.5 4E-07 8.6E-12 105.0 9.2 138 64-257 595-738 (854)
482 PRK09825 idnK D-gluconate kina 98.5 1.1E-07 2.4E-12 89.5 3.6 65 76-144 2-69 (176)
483 TIGR02680 conserved hypothetic 98.4 4E-07 8.7E-12 109.7 7.5 60 185-247 1245-1316(1353)
484 PRK13873 conjugal transfer ATP 98.3 1.9E-05 4.1E-10 91.1 18.8 47 203-249 633-680 (811)
485 PRK09270 nucleoside triphospha 98.3 7.5E-07 1.6E-11 87.3 5.8 74 75-149 31-108 (229)
486 cd01122 GP4d_helicase GP4d_hel 98.3 4.9E-06 1.1E-10 83.2 11.7 38 64-101 17-54 (271)
487 PRK06315 type III secretion sy 98.3 1.8E-06 3.9E-11 92.0 8.5 108 64-173 152-277 (442)
488 TIGR02903 spore_lon_C ATP-depe 98.3 2.2E-06 4.7E-11 95.7 8.9 110 76-232 174-291 (615)
489 PRK01889 GTPase RsgA; Reviewed 98.3 1.5E-06 3.2E-11 90.8 7.0 106 67-178 185-291 (356)
490 cd00009 AAA The AAA+ (ATPases 98.2 3.4E-06 7.4E-11 74.2 7.8 55 193-248 72-131 (151)
491 TIGR00416 sms DNA repair prote 98.2 2.7E-06 5.9E-11 91.6 8.3 62 204-265 169-247 (454)
492 PRK00454 engB GTP-binding prot 98.2 1.5E-05 3.3E-10 75.2 12.6 66 162-236 126-195 (196)
493 PRK10078 ribose 1,5-bisphospho 98.2 1.3E-06 2.9E-11 82.7 5.0 50 77-129 2-55 (186)
494 PF13555 AAA_29: P-loop contai 98.2 1.7E-06 3.7E-11 67.1 4.2 35 67-101 12-47 (62)
495 PRK08149 ATP synthase SpaL; Va 98.2 3E-06 6.6E-11 89.9 7.5 68 63-131 138-216 (428)
496 cd01876 YihA_EngB The YihA (En 98.2 2.8E-06 6E-11 77.0 6.3 43 187-233 122-169 (170)
497 TIGR00554 panK_bact pantothena 98.2 1.6E-06 3.4E-11 87.9 4.6 72 77-149 62-138 (290)
498 PF13558 SbcCD_C: Putative exo 98.2 4.5E-06 9.8E-11 69.8 6.5 47 186-232 31-90 (90)
499 PRK10416 signal recognition pa 98.1 2.6E-06 5.5E-11 87.7 4.6 71 75-145 112-192 (318)
500 PF00488 MutS_V: MutS domain V 98.1 5.2E-05 1.1E-09 74.7 13.7 46 203-248 120-167 (235)
No 1
>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=3.5e-100 Score=838.67 Aligned_cols=462 Identities=44% Similarity=0.766 Sum_probs=426.7
Q ss_pred CceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC---CcccEEEEC
Q 010509 35 HPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG---RINGRITYN 111 (508)
Q Consensus 35 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~---~~~G~I~~~ 111 (508)
.++.++|+|+++..+.+. .+.+++|+|||++++|||++||||||||||||||++|+|+.. ..+|+|++|
T Consensus 22 ~~~~~~~~~~~~~~~~~~--------~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvN 93 (613)
T KOG0061|consen 22 EPVKLSFRNLTLSSKEKS--------KKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLN 93 (613)
T ss_pred ccceeEEEEEEEEecCCC--------CccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEEC
Confidence 467899999999876321 135899999999999999999999999999999999999984 589999999
Q ss_pred CEeCCh-hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 112 GKPFSN-QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 112 G~~~~~-~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
|++... .+++.+|||.|||.++|+|||+|++.|+|.+|+|+..++++++++|+++++++||.+++|+++|+...|++||
T Consensus 94 G~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSG 173 (613)
T KOG0061|consen 94 GRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSG 173 (613)
T ss_pred CccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCcccc
Confidence 977654 6788999999999999999999999999999999988999999999999999999999999999988899999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||||||+||.+|++||+||+|||||||||+.++.++++.|+++|++|+|||+|+|||+.+++++||++++|++|+++|+|
T Consensus 174 GErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G 253 (613)
T KOG0061|consen 174 GERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSG 253 (613)
T ss_pred chhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHhcCCCCCCCCChHHHHHHhhcCC---------------------CC-----------------------C
Q 010509 271 EASGAMNYFASIGYCPSVPTNPSDFLLDLASGM---------------------PS-----------------------N 306 (508)
Q Consensus 271 ~~~~~~~~f~~~g~~~p~~~npad~~~~~~~~~---------------------~~-----------------------~ 306 (508)
+++++.+||+++|++||++.||+||++|+++.+ .. .
T Consensus 254 ~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (613)
T KOG0061|consen 254 SPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEALEKSLSTSKKVEIGTS 333 (613)
T ss_pred CHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHHhhhcccccccccccC
Confidence 999999999999999999999999999988732 00 1
Q ss_pred CCHHHHh-------------------------------------------------------------------------
Q 010509 307 GSWKEQA------------------------------------------------------------------------- 313 (508)
Q Consensus 307 ~~~~~q~------------------------------------------------------------------------- 313 (508)
.+|+.|+
T Consensus 334 ~s~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~~~~~~i~~f~ 413 (613)
T KOG0061|consen 334 PSWWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNLGNDAKGIQNRLGLFFFILSFMTFLSMFGAVPVFP 413 (613)
T ss_pred CcHHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHHHhHHHHhH
Confidence 3566665
Q ss_pred hhhhhhhhhcCCCCcChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010509 314 LEQKMLEKEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLAIGAM 393 (508)
Q Consensus 314 ~er~v~~rE~~~~~Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~ 393 (508)
.||++|.||+.+|+|+.++||+|++++++|+.++.+++|++|+|||+|+++++.+|++|++++++..++++++|+++|++
T Consensus 414 ~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~~~a~s~~~~i~~~ 493 (613)
T KOG0061|consen 414 QERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSSLVAESLGLFISAI 493 (613)
T ss_pred HHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCCC-CccccCCcccc
Q 010509 394 VMEQKSATILGSIIMQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDSG-GLCLVGEHPTI 470 (508)
Q Consensus 394 ~~~~~~a~~~~~~~~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~~-~~c~~~~~~~~ 470 (508)
+|+...|++++++++++|++|+|||++ ++|.||+|++|+||++|+|||++.|||.+ ....|.... ..|...+...+
T Consensus 494 ~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~-~~~~~~~~~~~~~~~~~~~~l 572 (613)
T KOG0061|consen 494 VPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSG-GSSRCFLSGNLCCESTGEDVL 572 (613)
T ss_pred ccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhc-cccccccCcCCcccccHHHHH
Confidence 999999999999999999999999998 99999999999999999999999999997 466786433 34555555556
Q ss_pred eeeCC--CcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010509 471 KKVGL--HRKYYSVIALAIMLVGYRLIAYIALMRIGA 505 (508)
Q Consensus 471 ~~~~~--~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 505 (508)
...++ .+.|.|++++++++++|++++|++|++..+
T Consensus 573 ~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~ 609 (613)
T KOG0061|consen 573 KQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVK 609 (613)
T ss_pred HhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 66665 579999999999999999999999988443
No 2
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=3.8e-98 Score=829.91 Aligned_cols=470 Identities=51% Similarity=0.862 Sum_probs=418.0
Q ss_pred CCCceeEEEEeEEEEEeccccc----------------cCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHH
Q 010509 33 AKHPVTLKFEDIVYKIKMKKGF----------------YGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTA 96 (508)
Q Consensus 33 ~~~~~~l~~~~l~~~~~~~~~~----------------~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~ 96 (508)
...++.+++.|++|+++..+.. ....++++++++|+|+|+++++||++||+||||||||||||+
T Consensus 34 ~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~i 113 (659)
T PLN03211 34 SCYPITLKFMDVCYRVKFENMKNKGSNIKRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNA 113 (659)
T ss_pred CCCceEEEEEeEEEEEccCCCcccccccccccccccccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHH
Confidence 3457899999999998644200 001134556789999999999999999999999999999999
Q ss_pred HhcCCCCc--ccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc
Q 010509 97 LGGRLGRI--NGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE 174 (508)
Q Consensus 97 L~g~~~~~--~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~ 174 (508)
|+|+.++. +|+|.+||+++....++.+|||+|++.+++.+||+||+.+++.++.+...++++++++++++++.+||.+
T Consensus 114 LaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~ 193 (659)
T PLN03211 114 LAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTK 193 (659)
T ss_pred HhCCCCCCceeEEEEECCEECchhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChh
Confidence 99998764 9999999999866556779999999999999999999999887776655566677788999999999999
Q ss_pred ccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhh
Q 010509 175 CKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYM 254 (508)
Q Consensus 175 ~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~ 254 (508)
++|+.+|+...++||||||||++||++|+.+|+||+|||||+|||+.++.++++.|++++++|+|||+++|||+.+++++
T Consensus 194 ~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~ 273 (659)
T PLN03211 194 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQM 273 (659)
T ss_pred hcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh
Confidence 99999999889999999999999999999999999999999999999999999999999988999999999998778899
Q ss_pred ccEEEEEeCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhhcCCC------------------------------
Q 010509 255 FHKVLLLSEGYPLYSGEASGAMNYFASIGYCPSVPTNPSDFLLDLASGMP------------------------------ 304 (508)
Q Consensus 255 ~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~npad~~~~~~~~~~------------------------------ 304 (508)
||++++|++|++++.|+++++.+||+++|++||.+.|||||++|+++.+.
T Consensus 274 ~D~iilL~~G~iv~~G~~~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 353 (659)
T PLN03211 274 FDSVLVLSEGRCLFFGKGSDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVK 353 (659)
T ss_pred hceEEEecCCcEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhccHHHH
Confidence 99999999999999999999999999999999999999999999865210
Q ss_pred ---------------------C---------CCCHHHHh-----------------------------------------
Q 010509 305 ---------------------S---------NGSWKEQA----------------------------------------- 313 (508)
Q Consensus 305 ---------------------~---------~~~~~~q~----------------------------------------- 313 (508)
. ..+|++|+
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~L~~R~~~~~r~~~~~~~r~~~~i~~~ll~G~lf~~~~~~ 433 (659)
T PLN03211 354 AAIEMSHFPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRSLKERKHESFNTLRVFQVIAAALLAGLMWWHSDFR 433 (659)
T ss_pred HHHhhhhhhcchhhhhhcccccccccCCCccCCCHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 0 03577775
Q ss_pred -----------------------------hhhhhhhhhcCCCCcChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCC
Q 010509 314 -----------------------------LEQKMLEKEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKP 364 (508)
Q Consensus 314 -----------------------------~er~v~~rE~~~~~Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~ 364 (508)
.||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++
T Consensus 434 ~~~~r~g~lff~~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~ 513 (659)
T PLN03211 434 DVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKP 513 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcC
Confidence 899999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccCCchhhHHHhhhhCHHHHHHHHHHH
Q 010509 365 TASNFFETLFVLLFSVLVSQGLGLAIGAMVMEQKSATILGSIIMQLFVLAGGYYVQNVPSFIAWIEYLSIGHHTYKLLLG 444 (508)
Q Consensus 365 ~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~ip~~~~W~~yiS~~~y~~eal~~ 444 (508)
++.+||+|++++++..++++++|+++|+++|+..+|+.+++++++++++||||++++||+||+|++|+||++|||||++.
T Consensus 514 ~~~~F~~f~li~~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~~ip~~~~W~~ylS~~~y~~eal~~ 593 (659)
T PLN03211 514 ELGAFLLTLLVLLGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVHKLPSCMAWIKYISTTFYSYRLLIN 593 (659)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHhhchHHHHHHHHhCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCC----cccCCCC----CCccccCCcccceeeCCCcchhHHHHHHHHHHHHHHHHHHHHHhhcc
Q 010509 445 SQYNYNE----TYPCGDS----GGLCLVGEHPTIKKVGLHRKYYSVIALAIMLVGYRLIAYIALMRIGA 505 (508)
Q Consensus 445 nef~~~~----~~~c~~~----~~~c~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~ 505 (508)
|||++.+ .++|+.. ...|.+.+. ..++..+.|.++++|++++++|++++|++|+++++
T Consensus 594 nef~~~~~~~~~~~C~~~~~~~~~~c~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~~ 659 (659)
T PLN03211 594 VQYGEGKRISSLLGCSLPHGSDRASCKFVEE---DVAGQISPATSVSVLIFMFVGYRLLAYLALRRIKH 659 (659)
T ss_pred HhcCCccccccccCCCCcccCCCCCCccchh---hhhcccchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9998643 2578632 123433222 22233468999999999999999999999998764
No 3
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=2.6e-94 Score=797.39 Aligned_cols=462 Identities=35% Similarity=0.653 Sum_probs=414.0
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC---cccEEEECCE
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR---INGRITYNGK 113 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~---~~G~I~~~G~ 113 (508)
..+++.++. +++.. .+. ++.+++.+|+|+|++++|||+++|+|||||||||||++|+|+.++ .+|+|.+||+
T Consensus 16 ~~~~~~~~~-~~~~~--~~~--~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~ 90 (617)
T TIGR00955 16 QDGSWKQLV-SRLRG--CFC--RERPRKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGM 90 (617)
T ss_pred ccchhhhhh-hhccc--ccc--cccCccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCE
Confidence 356666665 43321 111 123457899999999999999999999999999999999999866 3899999999
Q ss_pred eCCh-hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCC-CCCccCHH
Q 010509 114 PFSN-QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGP-LTRGVSGG 191 (508)
Q Consensus 114 ~~~~-~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~-~~~~LSGG 191 (508)
+++. ..++.+|||+|+|.+++.+||+||+.|++.++.+...++++++++++++++.+||.+++|+.+|++ ..++||||
T Consensus 91 ~~~~~~~~~~i~yv~Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgG 170 (617)
T TIGR00955 91 PIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGG 170 (617)
T ss_pred ECCHHHHhhhceeeccccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcc
Confidence 9864 567789999999999999999999999999888776777888889999999999999999999975 36799999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
|||||+||++|+.+|++++|||||+|||+.++.++++.|++++++|+|||+++|||+.+++++||++++|++|+++|+|+
T Consensus 171 qrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~ 250 (617)
T TIGR00955 171 ERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGS 250 (617)
T ss_pred hhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECC
Confidence 99999999999999999999999999999999999999999998899999999999888999999999999999999999
Q ss_pred hhhHHHHHHhcCCCCCCCCChHHHHHHhhcCCCC-----------------------------------------C----
Q 010509 272 ASGAMNYFASIGYCPSVPTNPSDFLLDLASGMPS-----------------------------------------N---- 306 (508)
Q Consensus 272 ~~~~~~~f~~~g~~~p~~~npad~~~~~~~~~~~-----------------------------------------~---- 306 (508)
++++.+||+++|++||++.|||||++++++.+.. +
T Consensus 251 ~~~~~~~f~~~g~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (617)
T TIGR00955 251 PDQAVPFFSDLGHPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENM 330 (617)
T ss_pred HHHHHHHHHHcCCCCCCCCChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccc
Confidence 9999999999999999999999999998752110 0
Q ss_pred ------CCHHHHh-------------------------------------------------------------------
Q 010509 307 ------GSWKEQA------------------------------------------------------------------- 313 (508)
Q Consensus 307 ------~~~~~q~------------------------------------------------------------------- 313 (508)
.+|+.|+
T Consensus 331 ~~~~~~~~~~~q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~~~~~~~~~~~~g~lf~~~~~~~f~~~~~ 410 (617)
T TIGR00955 331 EGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQGLTQKGVQNINGALFLFLTNMTFQNVFP 410 (617)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2455554
Q ss_pred ------hhhhhhhhhcCCCCcChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 010509 314 ------LEQKMLEKEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLG 387 (508)
Q Consensus 314 ------~er~v~~rE~~~~~Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~ 387 (508)
.||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||.|+++++++.++++++|
T Consensus 411 ~~~~f~~er~v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~ 490 (617)
T TIGR00955 411 VINVFTAELPVFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFG 490 (617)
T ss_pred HHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCC--CCccc
Q 010509 388 LAIGAMVMEQKSATILGSIIMQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDS--GGLCL 463 (508)
Q Consensus 388 ~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~--~~~c~ 463 (508)
+++++++|+..+|+.+++++++++++|+||+++ +||+||+|++|+||++|++||++.|||.+....+|.+. ++.|.
T Consensus 491 ~~i~~~~~~~~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~ 570 (617)
T TIGR00955 491 YLISCAFSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCP 570 (617)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCC
Confidence 999999999999999999999999999999998 99999999999999999999999999988644478642 34587
Q ss_pred cCCcccceeeCCC--cchhHHHHHHHHHHHHHHHHHHHHHhh
Q 010509 464 VGEHPTIKKVGLH--RKYYSVIALAIMLVGYRLIAYIALMRI 503 (508)
Q Consensus 464 ~~~~~~~~~~~~~--~~~~~~~il~~~~~~~~~~~~~~l~~~ 503 (508)
..+...++.+|++ +.|.++++++++.++|++++|++|++.
T Consensus 571 ~~g~~~l~~~g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~ 612 (617)
T TIGR00955 571 SSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIR 612 (617)
T ss_pred cChHHHHHhcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6665566777764 689999999999999999999999883
No 4
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=2.6e-90 Score=817.48 Aligned_cols=473 Identities=29% Similarity=0.481 Sum_probs=413.8
Q ss_pred CceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC--CcccEEEECC
Q 010509 35 HPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG--RINGRITYNG 112 (508)
Q Consensus 35 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~--~~~G~I~~~G 112 (508)
.+..++|+||+|.++.+........+.+++++|+|||++++|||++||+||||||||||||+|+|+.+ +.+|+|.+||
T Consensus 864 ~~~~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG 943 (1470)
T PLN03140 864 TPLAMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISG 943 (1470)
T ss_pred CcceEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECC
Confidence 35689999999999754321111112235689999999999999999999999999999999999975 4799999999
Q ss_pred EeCCh-hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 113 KPFSN-QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 113 ~~~~~-~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
++..+ ..++.+|||+|+|.+++.+||+|++.|++.++.+...+++++.++++++++.+||.+++|+.+|++.+++||||
T Consensus 944 ~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 944 FPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred ccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHH
Confidence 98754 45678999999999999999999999998888766666677778899999999999999999998777899999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC-CeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE-GYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~-G~iv~~G 270 (508)
|||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++ |+++|+|
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence 999999999999999999999999999999999999999999988999999999999778899999999996 8999999
Q ss_pred Ch----hhHHHHHHhc-CC-CCCCCCChHHHHHHhhcCCCC-----C---------------------------------
Q 010509 271 EA----SGAMNYFASI-GY-CPSVPTNPSDFLLDLASGMPS-----N--------------------------------- 306 (508)
Q Consensus 271 ~~----~~~~~~f~~~-g~-~~p~~~npad~~~~~~~~~~~-----~--------------------------------- 306 (508)
++ +++.+||+++ |+ +||+..|||||++|+++.... |
T Consensus 1104 ~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~~~~~d~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 1183 (1470)
T PLN03140 1104 PLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEVKLGIDFAEHYKSSSLYQRNKALVKELSTPPPGASDLYF 1183 (1470)
T ss_pred CcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccccccchHHHHHhccHHHHHHHHHHHHhccCCCCcccccc
Confidence 96 5899999997 66 499999999999998652100 0
Q ss_pred -----CCHHHHh--------------------------------------------------------------------
Q 010509 307 -----GSWKEQA-------------------------------------------------------------------- 313 (508)
Q Consensus 307 -----~~~~~q~-------------------------------------------------------------------- 313 (508)
.+|++|+
T Consensus 1184 ~~~~~~s~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 1263 (1470)
T PLN03140 1184 ATQYSQSTWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINNC 1263 (1470)
T ss_pred CccccCCHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCCCCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3455554
Q ss_pred --------hhhhhhhhhcCCCCcChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 010509 314 --------LEQKMLEKEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQG 385 (508)
Q Consensus 314 --------~er~v~~rE~~~~~Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s 385 (508)
.||++|+||+++|+|++.+|++|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++++.+++++
T Consensus 1264 ~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~~~f~~~~~~~~l~~~~~~~ 1343 (1470)
T PLN03140 1264 STVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTAAKFFWFYFISFFSFLYFTY 1343 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCCCCccc
Q 010509 386 LGLAIGAMVMEQKSATILGSIIMQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDSGGLCL 463 (508)
Q Consensus 386 ~~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~~~~c~ 463 (508)
+|+++++++|+.++|+.++++++.++++|+||++| +||+||+|++|+||++|+++|++.|||++. ...|+..+....
T Consensus 1344 ~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~~~f~~~-~~~~~~~~~~~~ 1422 (1470)
T PLN03140 1344 YGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDV-EDTIKVPGGAPD 1422 (1470)
T ss_pred HHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHHHHhCCC-CCcccCCCCCCC
Confidence 99999999999999999999999999999999998 999999999999999999999999999886 455542111000
Q ss_pred c-CCcccceeeCC--CcchhHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 010509 464 V-GEHPTIKKVGL--HRKYYSVIALAIMLVGYRLIAYIALMRIGATRN 508 (508)
Q Consensus 464 ~-~~~~~~~~~~~--~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~~ 508 (508)
. .+....+.+|+ ++.|++++++++++++|++++++++++++++|.
T Consensus 1423 ~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1423 PTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred CcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 0 01112456666 457999999999999999999999999988764
No 5
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=3.4e-90 Score=818.29 Aligned_cols=469 Identities=28% Similarity=0.420 Sum_probs=411.2
Q ss_pred CceeEEEEeEEEEEeccccccC-------------------cccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHH
Q 010509 35 HPVTLKFEDIVYKIKMKKGFYG-------------------SNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLT 95 (508)
Q Consensus 35 ~~~~l~~~~l~~~~~~~~~~~~-------------------~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~ 95 (508)
+.+.+.|+||+++.......+. ..++..++++|+|+|+.+++||+++|+||||||||||||
T Consensus 26 ~~~~v~~~~l~v~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk 105 (1394)
T TIGR00956 26 YKLGVAYKNLSAYGVAADSDYQPTFPNALLKILTRGFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLK 105 (1394)
T ss_pred CeeeEEEECCEEEEEeccccccCchHHHHHHHHHHHHHHhcccCCCCcceeeeCCEEEEECCEEEEEECCCCCCHHHHHH
Confidence 3678999999987632211100 012234578999999999999999999999999999999
Q ss_pred HHhcCC----CCcccEEEECCEeCCh---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC----CCCHHHHHHH-H
Q 010509 96 ALGGRL----GRINGRITYNGKPFSN---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN----SFTEKEKIKC-A 163 (508)
Q Consensus 96 ~L~g~~----~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~----~~~~~~~~~~-v 163 (508)
+|+|+. .+++|+|.+||+++.+ ..++.++||+|+|.++|.+||+||+.|++.++.|. ..+++++.++ +
T Consensus 106 ~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1394)
T TIGR00956 106 TIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIA 185 (1394)
T ss_pred HHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHH
Confidence 999986 4689999999998743 34567999999999999999999999998877543 2344554444 5
Q ss_pred HHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEE
Q 010509 164 EAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVM 242 (508)
Q Consensus 164 ~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~ 242 (508)
+++++.+||++++|+++|+..+++|||||||||+||++|+.+|++++|||||+|||+.++.++++.|++++++ |+|||+
T Consensus 186 ~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii 265 (1394)
T TIGR00956 186 DVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLV 265 (1394)
T ss_pred HHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEE
Confidence 7799999999999999999999999999999999999999999999999999999999999999999999874 999999
Q ss_pred EecCcchHHHhhccEEEEEeCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHHHHhhcCCC-----------C------
Q 010509 243 TIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFASIGYCPSVPTNPSDFLLDLASGMP-----------S------ 305 (508)
Q Consensus 243 s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~npad~~~~~~~~~~-----------~------ 305 (508)
++|||++.++++||++++|++|+++|+|+++++.+||+++||+||+++|||||++++++.+. +
T Consensus 266 ~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~ 345 (1394)
T TIGR00956 266 AIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAKQYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEF 345 (1394)
T ss_pred EecCCCHHHHHhhceEEEEeCCeEEEECCHHHHHHHHHHcCCCCCCCCChHHHHHhccChhhhhccccccccCCCCHHHH
Confidence 99999888999999999999999999999999999999999999999999999999865210 0
Q ss_pred ---------------------------------------------------CCCHHHHh---------------------
Q 010509 306 ---------------------------------------------------NGSWKEQA--------------------- 313 (508)
Q Consensus 306 ---------------------------------------------------~~~~~~q~--------------------- 313 (508)
..+|++|+
T Consensus 346 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~~~l~~R~~~~~~Rd~~~~~~r 425 (1394)
T TIGR00956 346 ETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKYCLARNFLRMKGNPSFTLFM 425 (1394)
T ss_pred HHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHHHHHHhhhcccccCCCCCcCCHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 02355664
Q ss_pred ---------------------------------------------------hhhhhhhhhcCCCCcChHHHHHHHHHHHh
Q 010509 314 ---------------------------------------------------LEQKMLEKEIPSGMYRLSAYFMSRIISDL 342 (508)
Q Consensus 314 ---------------------------------------------------~er~v~~rE~~~~~Y~~~~y~~a~~l~~l 342 (508)
.||+||+||+.+++|++++|++|++++|+
T Consensus 426 ~~~~ii~~li~G~~F~~~~~~~~~~~~r~g~lf~~~~~~~~~~~~~i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~i 505 (1394)
T TIGR00956 426 VFGNIIMALILSSVFYNLPKNTSDFYSRGGALFFAILFNAFSSLLEIASMYEARPIVEKHRKYALYHPSADAIASIISEI 505 (1394)
T ss_pred HHHHHHHHHHHHHhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcceeeeccccccCHHHHHHHHHHHHH
Confidence 79999999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccC--
Q 010509 343 PIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLAIGAMVMEQKSATILGSIIMQLFVLAGGYYVQ-- 420 (508)
Q Consensus 343 p~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~-- 420 (508)
|+.++.+++|++|+|||+||++++.+||+|+++++++.++++++++++|+++|+..+|+.+++++++++++|+||++|
T Consensus 506 P~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~ 585 (1394)
T TIGR00956 506 PFKIIESVVFNIILYFMVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRP 585 (1394)
T ss_pred HHHHHHHHHHHhhhEEcCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChh
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCC-------------CCCccccCC----------cccce-eeCC-
Q 010509 421 NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGD-------------SGGLCLVGE----------HPTIK-KVGL- 475 (508)
Q Consensus 421 ~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~-------------~~~~c~~~~----------~~~~~-~~~~- 475 (508)
+||+||+|++|+||++|||||++.|||++. .++|.. .+..|...+ ...+. .+++
T Consensus 586 ~mp~~~~W~~yisp~~yafeal~~nef~~~-~~~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~ 664 (1394)
T TIGR00956 586 SMLGWSKWIYYVNPLAYAFESLMVNEFHGR-RFECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYY 664 (1394)
T ss_pred hccHHHHHHHHcCHHHHHHHHHHHhhhcCC-cccccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcc
Confidence 999999999999999999999999999986 789951 134575321 11222 3444
Q ss_pred -CcchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 010509 476 -HRKYYSVIALAIMLVGYRLIAYIALMRIG 504 (508)
Q Consensus 476 -~~~~~~~~il~~~~~~~~~~~~~~l~~~~ 504 (508)
.+.|+|++++++++++|++++++++++++
T Consensus 665 ~~~~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 665 NSHKWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 47899999999999999999999999876
No 6
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=6.6e-90 Score=814.02 Aligned_cols=468 Identities=26% Similarity=0.432 Sum_probs=404.4
Q ss_pred CceeEEEEeEEEEEeccccc----------------c----C--cccccccceeeeceEEEEeCCeEEEEECCCCCcHHH
Q 010509 35 HPVTLKFEDIVYKIKMKKGF----------------Y----G--SNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTT 92 (508)
Q Consensus 35 ~~~~l~~~~l~~~~~~~~~~----------------~----~--~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKST 92 (508)
+.+.++|+||++........ . + .++ ..+++||+|+|+.++|||+++|+|||||||||
T Consensus 128 ~~~~v~~~~l~v~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~k-~~~~~IL~~vs~~i~~Ge~~~llGpnGSGKST 206 (1470)
T PLN03140 128 PTVEVRFEHLTVEADCYIGSRALPTLPNAARNIAESALGMLGINLAK-KTKLTILKDASGIIKPSRMTLLLGPPSSGKTT 206 (1470)
T ss_pred CCCeeEEeCCEEEEEecCCcccCCcHHHHHHHHHHHHHHHhccccCC-CccceeccCCeEEEeCCeEEEEEcCCCCCHHH
Confidence 45679999999876521100 0 0 012 23578999999999999999999999999999
Q ss_pred HHHHHhcCCCCc---ccEEEECCEeCCh-hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-------CCCHHHH--
Q 010509 93 LLTALGGRLGRI---NGRITYNGKPFSN-QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN-------SFTEKEK-- 159 (508)
Q Consensus 93 LL~~L~g~~~~~---~G~I~~~G~~~~~-~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~-------~~~~~~~-- 159 (508)
|||+|+|+++++ +|+|.+||+++.+ ..++.++||+|+|.+++.+||+||+.|++.++.+. ..+++++
T Consensus 207 LLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~ 286 (1470)
T PLN03140 207 LLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDA 286 (1470)
T ss_pred HHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhc
Confidence 999999999877 9999999998854 33678999999999999999999999998765321 1112221
Q ss_pred ----------------------HHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 010509 160 ----------------------IKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSG 217 (508)
Q Consensus 160 ----------------------~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsg 217 (508)
+..++++++.+||++++||.+|+..+++|||||||||+||++|+.+|++++|||||+|
T Consensus 287 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsG 366 (1470)
T PLN03140 287 GIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTG 366 (1470)
T ss_pred cCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcC
Confidence 1235789999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHHHHHhcCCCCCCCCChHHHH
Q 010509 218 LDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFASIGYCPSVPTNPSDFL 296 (508)
Q Consensus 218 LD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~npad~~ 296 (508)
||+.++.++++.|+++++ .|+|+|+++|||+++++++||+|++|++|+++|+|+++++.+||+++||.||+++|||||+
T Consensus 367 LDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl 446 (1470)
T PLN03140 367 LDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFL 446 (1470)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHH
Confidence 999999999999999987 5999999999998889999999999999999999999999999999999999999999999
Q ss_pred HHhhcCCC----------C----C-----------------------------------------CCHHHHh--------
Q 010509 297 LDLASGMP----------S----N-----------------------------------------GSWKEQA-------- 313 (508)
Q Consensus 297 ~~~~~~~~----------~----~-----------------------------------------~~~~~q~-------- 313 (508)
+++++... + . .++++|+
T Consensus 447 ~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~s~~~q~~~~~~R~~ 526 (1470)
T PLN03140 447 QEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHVGMQLENELSVPFDKSQSHKAALVFSKYSVPKMELLKACWDKEW 526 (1470)
T ss_pred HHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHHHHHHHHHHhhhhhhhhcccccccCCCCcCCHHHHHHHHHHHHH
Confidence 99876311 0 0 1233332
Q ss_pred -------------------------------------------------------------------hhhhhhhhhcCCC
Q 010509 314 -------------------------------------------------------------------LEQKMLEKEIPSG 326 (508)
Q Consensus 314 -------------------------------------------------------------------~er~v~~rE~~~~ 326 (508)
.+|+||+|||.++
T Consensus 527 ~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~~~~~~~~~~~~~~~g~lff~~l~~~~~~~~~l~~~~~~r~vf~ker~~~ 606 (1470)
T PLN03140 527 LLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHTRNEEDGALYIGALLFSMIINMFNGFAELALMIQRLPVFYKQRDLL 606 (1470)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHhhhcc
Confidence 7999999999999
Q ss_pred CcChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 010509 327 MYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLAIGAMVMEQKSATILGSI 406 (508)
Q Consensus 327 ~Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~ 406 (508)
+|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|+++++++.+++++++++++++++++.+|+.++++
T Consensus 607 ~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~ 686 (1470)
T PLN03140 607 FHPPWTFTLPTFLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGAL 686 (1470)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCCCCccccCCcccceeeCCC----cchh
Q 010509 407 IMQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDSGGLCLVGEHPTIKKVGLH----RKYY 480 (508)
Q Consensus 407 ~~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~~~~c~~~~~~~~~~~~~~----~~~~ 480 (508)
+++++++|+||+++ +||+||+|++|+||++|||||++.|||.+. .+.|......+...+...++.+|+. ..|+
T Consensus 687 ~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Ya~eal~~NEf~~~-~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~ 765 (1470)
T PLN03140 687 VLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAP-RWMNKMASDNSTRLGTAVLNIFDVFTDKNWYWI 765 (1470)
T ss_pred HHHHHHHHccceechHhCchHHHHHHHhCHHHHHHHHHHHHhccCc-cccCcccCCCCcccHHHHHHhcCcCccccchhh
Confidence 99999999999998 999999999999999999999999999764 3321100011223333456666653 3589
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Q 010509 481 SVIALAIMLVGYRLIAYIALMRIG 504 (508)
Q Consensus 481 ~~~il~~~~~~~~~~~~~~l~~~~ 504 (508)
++++|++++++|+++++++|++++
T Consensus 766 ~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 766 GVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999866
No 7
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.9e-87 Score=794.83 Aligned_cols=458 Identities=29% Similarity=0.480 Sum_probs=403.8
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC---CcccEEEECCE
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG---RINGRITYNGK 113 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~---~~~G~I~~~G~ 113 (508)
..++|+||+++++.+ .+++.+|+|||++++|||++||+||||||||||||+|+|+.+ +++|+|.+||+
T Consensus 758 ~~l~~~nl~~~~~~~---------~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~ 828 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIK---------KEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGR 828 (1394)
T ss_pred ceEEEEeeEEEecCC---------CCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCE
Confidence 458999999987521 124689999999999999999999999999999999999986 68899999999
Q ss_pred eCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 114 PFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 114 ~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
++....++.+|||+|+|.+++.+||+|++.|++.++.|...++++++++++++++.+||.+++|+.+|+. ..+||||||
T Consensus 829 ~~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~-~~~LSgGqr 907 (1394)
T TIGR00956 829 PLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVP-GEGLNVEQR 907 (1394)
T ss_pred ECChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCC-CCCCCHHHh
Confidence 9866677889999999999999999999999998887666667777889999999999999999999843 348999999
Q ss_pred HHHHHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC-eEEEEcC
Q 010509 194 KRVSIGQEILINPS-LLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG-YPLYSGE 271 (508)
Q Consensus 194 qRv~Ia~aL~~~P~-illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G-~iv~~G~ 271 (508)
|||+||+||+.+|+ ||||||||||||+.++..+++.|++++++|+|||+++|||+..+++.||++++|++| +++|+|+
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999999999889999999999997778889999999987 9999999
Q ss_pred h----hhHHHHHHhcCC-CCCCCCChHHHHHHhhcCCCC-----------------------------------------
Q 010509 272 A----SGAMNYFASIGY-CPSVPTNPSDFLLDLASGMPS----------------------------------------- 305 (508)
Q Consensus 272 ~----~~~~~~f~~~g~-~~p~~~npad~~~~~~~~~~~----------------------------------------- 305 (508)
+ +++.+||++.|+ +||++.|||||++|+++....
T Consensus 988 ~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1067 (1394)
T TIGR00956 988 LGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEYQAVKNELDRLEAELSKAEDDNDPD 1067 (1394)
T ss_pred cccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccchhccHHHHHhcCHHHHHHHHHHHHhhcccccCccccccc
Confidence 7 578999999996 999999999999998642100
Q ss_pred -----CCCHHHHh-------------------------------------------------------------------
Q 010509 306 -----NGSWKEQA------------------------------------------------------------------- 313 (508)
Q Consensus 306 -----~~~~~~q~------------------------------------------------------------------- 313 (508)
..+|++|+
T Consensus 1068 ~~~~~~~s~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~~~~~~~i~~~~g~~f~~~~~~~~~~~~~ 1147 (1394)
T TIGR00956 1068 ALSKYAASLWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKVGTSLQGLQNQMFAVFMATVLFNPLIQQY 1147 (1394)
T ss_pred cccccCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 04566665
Q ss_pred -----hhhhhh-hhhcCCCCcChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHH-------HHHHHHHHHHHH
Q 010509 314 -----LEQKML-EKEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASN-------FFETLFVLLFSV 380 (508)
Q Consensus 314 -----~er~v~-~rE~~~~~Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~-------f~~f~~~~~l~~ 380 (508)
.||.+| +||+++|+|++.+|++|++++|+|+.++.+++|.+|+|||+||++++.. |++|++++++..
T Consensus 1148 ~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f~~~~~~~~~~~ 1227 (1394)
T TIGR00956 1148 LPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERGVLFWLLSTMFF 1227 (1394)
T ss_pred hhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchHHHHHHHHHHHH
Confidence 567664 9999999999999999999999999999999999999999999988866 999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCC
Q 010509 381 LVSQGLGLAIGAMVMEQKSATILGSIIMQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDS 458 (508)
Q Consensus 381 ~~~~s~~~~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~ 458 (508)
++++++|+++++++|+.++|+.++++++.++++|+||+++ +||.||+|++|+||++|+++|++.|||++. +++|.+.
T Consensus 1228 ~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~~~~-~~~C~~~ 1306 (1394)
T TIGR00956 1228 LYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADV-PVTCKVK 1306 (1394)
T ss_pred HHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHcCCC-eeecCcc
Confidence 9999999999999999999999999999999999999998 999999999999999999999999999986 7778642
Q ss_pred ---------CCccc---------------------------cC-CcccceeeC--CCcchhHHHHHHHHHHHHHHHHHHH
Q 010509 459 ---------GGLCL---------------------------VG-EHPTIKKVG--LHRKYYSVIALAIMLVGYRLIAYIA 499 (508)
Q Consensus 459 ---------~~~c~---------------------------~~-~~~~~~~~~--~~~~~~~~~il~~~~~~~~~~~~~~ 499 (508)
+..|. +. +...+..++ .++.|+|+++++++++++ ++++++
T Consensus 1307 e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~~~~~-~~~~~~ 1385 (1394)
T TIGR00956 1307 ELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAFIFFN-IIATVF 1385 (1394)
T ss_pred ccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHHHHHH-HHHHHh
Confidence 33342 21 111234444 457899999999999999 888888
Q ss_pred HHhhccc
Q 010509 500 LMRIGAT 506 (508)
Q Consensus 500 l~~~~~~ 506 (508)
|++..+.
T Consensus 1386 l~~~~r~ 1392 (1394)
T TIGR00956 1386 FYWLARV 1392 (1394)
T ss_pred hheEEEc
Confidence 8774433
No 8
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=2.7e-85 Score=735.38 Aligned_cols=465 Identities=33% Similarity=0.528 Sum_probs=406.3
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--CCcccEEEECCE
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRINGRITYNGK 113 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--~~~~G~I~~~G~ 113 (508)
+..++.+||.+.++.... -..+.+++++|+|||+.++||.++||||+||||||||||+||||. +..+|+|++||.
T Consensus 779 ~~~~~~~~V~~w~dl~~~---~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~ 855 (1391)
T KOG0065|consen 779 PLSLTFKDVFYWVDLPYE---MPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGF 855 (1391)
T ss_pred cccccccceEEEEeCCcc---ccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCe
Confidence 345566666655543311 112225689999999999999999999999999999999999996 578999999999
Q ss_pred eCC-hhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 114 PFS-NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 114 ~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
+.+ +.++|.+|||.|+|.|.|.+||+|.|.|+|.+|+|...+.+++.+.||++++.++|++++|..||.+. +|||.+|
T Consensus 856 p~~q~tF~R~~GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G-~GLs~eQ 934 (1391)
T KOG0065|consen 856 PKDQETFARVSGYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPG-SGLSTEQ 934 (1391)
T ss_pred eCchhhhccccceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCC-CCCCHHH
Confidence 998 57899999999999999999999999999999999999999999999999999999999999999877 9999999
Q ss_pred HHHHHHHHHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe-CCeEEEEc
Q 010509 193 RKRVSIGQEILINP-SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS-EGYPLYSG 270 (508)
Q Consensus 193 rqRv~Ia~aL~~~P-~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~-~G~iv~~G 270 (508)
|||++||.+|+.+| .||||||||||||+.++..|++.+|++++.|+||+||+|||+..+++.||++++|+ +|++||+|
T Consensus 935 RKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G 1014 (1391)
T KOG0065|consen 935 RKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFG 1014 (1391)
T ss_pred hceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEec
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999998 68999999
Q ss_pred Chhh----HHHHHHhcC-CCCCCCCChHHHHHHhhcCCCC-----C----------------------------------
Q 010509 271 EASG----AMNYFASIG-YCPSVPTNPSDFLLDLASGMPS-----N---------------------------------- 306 (508)
Q Consensus 271 ~~~~----~~~~f~~~g-~~~p~~~npad~~~~~~~~~~~-----~---------------------------------- 306 (508)
+..+ +++||+++| .+||+..|||||++|+++.... |
T Consensus 1015 ~lG~~s~~li~YFes~~~~~~~~~~NPA~~mLevi~~~~~~~~~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~~~~~~~~ 1094 (1391)
T KOG0065|consen 1015 PLGENSSKLIEYFESIGGVKCISDENPAEWMLEVIGAGAEASLSVDFAEIWKNSEEYKRNKELVKELSQPPPGFSTDLEF 1094 (1391)
T ss_pred CcccccHHHHHHHHhcCCccCCCCCChHHHHHhhcccccccccCccHHHHHhccHHHHHHHHHHHHHhcCCccCCccccc
Confidence 9864 677999976 8999999999999999763110 0
Q ss_pred -----CCHHHHh--------------------------------------------------------------------
Q 010509 307 -----GSWKEQA-------------------------------------------------------------------- 313 (508)
Q Consensus 307 -----~~~~~q~-------------------------------------------------------------------- 313 (508)
.|++.|+
T Consensus 1095 ~~~fa~s~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~g~~~q~lqn~m~a~yma~v~~~~~~~~~~ 1174 (1391)
T KOG0065|consen 1095 KTRFAQSLWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKVGHNVQGLQNAMGAAYMATVFSGPNNNQLQ 1174 (1391)
T ss_pred ccccchhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeecCCcHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 4555554
Q ss_pred -----hhhhhhhhhcCCCCcChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 010509 314 -----LEQKMLEKEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGL 388 (508)
Q Consensus 314 -----~er~v~~rE~~~~~Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~ 388 (508)
.||.+++||+++|+|+..+|++|++++|+|+.++++.+|.++.|+|+|+..++.+|++|++.+++..++.+.+|+
T Consensus 1175 ~~~v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gm 1254 (1391)
T KOG0065|consen 1175 QPAVATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGM 1254 (1391)
T ss_pred hhHHhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCCCC------
Q 010509 389 AIGAMVMEQKSATILGSIIMQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDSGG------ 460 (508)
Q Consensus 389 ~i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~~~------ 460 (508)
++.+++|+.++|+.+.+.++.++.+|+|+++| .||.||+|++|+||+.|..++++..++++. +..|...+.
T Consensus 1255 m~~s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~-~v~c~~~e~~~~~pp 1333 (1391)
T KOG0065|consen 1255 MLVSLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDV-EVTCEDSEMNYFDPP 1333 (1391)
T ss_pred HHHHhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCC-ceeeecCCccccCCC
Confidence 99999999999999999999999999999998 999999999999999999999999999975 778865332
Q ss_pred ---ccccCCcccceeeC----C--CcchhHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q 010509 461 ---LCLVGEHPTIKKVG----L--HRKYYSVIALAIMLVGYRLIAYIALMRIGATRN 508 (508)
Q Consensus 461 ---~c~~~~~~~~~~~~----~--~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~~~ 508 (508)
.|.. .....+| + +.......+.+++.+++..++.+..++.+..||
T Consensus 1334 ~g~tcge---~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~wrn 1387 (1391)
T KOG0065|consen 1334 SGQTCGE---FMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNFWRN 1387 (1391)
T ss_pred CCcCHHH---HHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHHHHh
Confidence 2210 0011222 2 112223345566778888888888888776665
No 9
>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=7.1e-82 Score=707.87 Aligned_cols=443 Identities=33% Similarity=0.566 Sum_probs=398.3
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC---CcccEEEECCEeCChh-ccccEEEEecCCCCCCCCCH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG---RINGRITYNGKPFSNQ-MTRNTGFVTQEDVLSPYLTV 138 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~---~~~G~I~~~G~~~~~~-~~~~i~yv~Q~~~l~~~lTv 138 (508)
..++|+|+|+-++|||++.++||+||||||||++|+|.++ ...|+|.+||.+.++. .++.++|+.|+|.|+|.|||
T Consensus 127 ~~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTV 206 (1391)
T KOG0065|consen 127 KIQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTV 206 (1391)
T ss_pred cceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEE
Confidence 4579999999999999999999999999999999999763 3467999999998763 36789999999999999999
Q ss_pred HHHHHHHHHhcCCCC----CCHHHHHH-HHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 010509 139 TETMVFTALLQLPNS----FTEKEKIK-CAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDE 213 (508)
Q Consensus 139 ~E~l~~~~~l~~~~~----~~~~~~~~-~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDE 213 (508)
+|+|.|+++++.+.. .+++++.+ ..+.+++.+||++|+||++||...|++||||||||++|.+++.+|+++++||
T Consensus 207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De 286 (1391)
T KOG0065|consen 207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE 286 (1391)
T ss_pred eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence 999999999987732 33444333 5789999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHHHHHhcCCCCCCCCCh
Q 010509 214 PTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFASIGYCPSVPTNP 292 (508)
Q Consensus 214 PtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~~p~~~np 292 (508)
+|+|||+.++.++++.||++++ .+.|.+++.|||+++++++||+|++|.+|+++|+||.+++++||+++||.||+++++
T Consensus 287 ~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe~~Gf~cP~r~~~ 366 (1391)
T KOG0065|consen 287 ITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFEDMGFKCPPRKGT 366 (1391)
T ss_pred ccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHHhcCccCCCccCH
Confidence 9999999999999999999987 489999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCCCCC-------------------------------------------------------CCHHHHh----
Q 010509 293 SDFLLDLASGMPSN-------------------------------------------------------GSWKEQA---- 313 (508)
Q Consensus 293 ad~~~~~~~~~~~~-------------------------------------------------------~~~~~q~---- 313 (508)
|||+.++++...+. .+.|+|+
T Consensus 367 ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k~~~~al~s~~y~v~~~~qvk~c~ 446 (1391)
T KOG0065|consen 367 ADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSKKHKAALVSSKYSVPYWEQVKACT 446 (1391)
T ss_pred HHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhhccchhhcCCceeccHHHHHHHHH
Confidence 99999999832110 3444443
Q ss_pred ---------------------------------------------------------------------hhhhhhhhhcC
Q 010509 314 ---------------------------------------------------------------------LEQKMLEKEIP 324 (508)
Q Consensus 314 ---------------------------------------------------------------------~er~v~~rE~~ 324 (508)
+.||||+|||.
T Consensus 447 ~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~~~~t~~~~~~~~~~lffsll~~~f~~laEi~~~~~~~pv~~Khr~ 526 (1391)
T KOG0065|consen 447 IREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRTPMSTTSGGYSRGGALFFALLFNLFNGLAEIALTFQRLPVFYKHRD 526 (1391)
T ss_pred HHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeeccCcccccchhhhhHHHHHHHHHHHHhHHHHHHHHhhcchHHHhhc
Confidence 78999999999
Q ss_pred CCCcChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 010509 325 SGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLAIGAMVMEQKSATILG 404 (508)
Q Consensus 325 ~~~Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~ 404 (508)
..+|+++||.++.++.++|+.++.+++|.+|+||++||.++|++||.++++++++..|+.++++++++++++...|+.++
T Consensus 527 ~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr~ia~l~~t~~~An~~g 606 (1391)
T KOG0065|consen 527 LSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFRFIASLSRTLSIANLIG 606 (1391)
T ss_pred ccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHhhHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCC----------CCCccccCC-ccc--
Q 010509 405 SIIMQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGD----------SGGLCLVGE-HPT-- 469 (508)
Q Consensus 405 ~~~~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~----------~~~~c~~~~-~~~-- 469 (508)
++.++.+.+++||+|| +||+||+|++|+||+.||||+++.|||.++ .++|.+ .+..|...+ .++
T Consensus 607 ~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~-~~~c~p~gp~y~n~~~~~~~c~~~~~~~G~~ 685 (1391)
T KOG0065|consen 607 GILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGR-RWPCSPSGPAYDNISIENKVCAATGATLGND 685 (1391)
T ss_pred HHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcc-cCCCCCCCCcccccccccccchhhccccCce
Confidence 9999999999999999 999999999999999999999999999986 789983 134564322 122
Q ss_pred -ceee---------CCCcchhHHHHHHHHHHHHHHHHHHHHHhhccc
Q 010509 470 -IKKV---------GLHRKYYSVIALAIMLVGYRLIAYIALMRIGAT 506 (508)
Q Consensus 470 -~~~~---------~~~~~~~~~~il~~~~~~~~~~~~~~l~~~~~~ 506 (508)
++.. ...+.|+|++|++|+.++|.++..+++.+++..
T Consensus 686 ~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~p~ 732 (1391)
T KOG0065|consen 686 YVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLKPL 732 (1391)
T ss_pred EEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcCcc
Confidence 1111 124689999999999999999999999987643
No 10
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=9.9e-57 Score=421.95 Aligned_cols=217 Identities=28% Similarity=0.513 Sum_probs=200.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+++|+ +.++|+|||++|++||+++|+||||||||||||||.++..+++|+|.++|+++..
T Consensus 2 mi~i~~l~K~fg-------------~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~ 68 (240)
T COG1126 2 MIEIKNLSKSFG-------------DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGD 68 (240)
T ss_pred eEEEEeeeEEeC-------------CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccc
Confidence 589999999876 5789999999999999999999999999999999999999999999999987642
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..|+.+|+|||+..|||++||.||+..+...- ...++++.++++.++|+.+||.+.+|.+. .+|||||
T Consensus 69 ~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v--~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----~qLSGGQ 141 (240)
T COG1126 69 KKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKV--KKLSKAEAREKALELLEKVGLADKADAYP-----AQLSGGQ 141 (240)
T ss_pred hhhHHHHHHhcCeecccccccccchHHHHHHhhhHHH--cCCCHHHHHHHHHHHHHHcCchhhhhhCc-----cccCcHH
Confidence 46889999999999999999999999875321 35678899999999999999999998665 5999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
||||+|||||+.+|+++++|||||+|||....++++.+++|+++|.|.|++||++. .+.+.+|||++|++|+++..|+|
T Consensus 142 qQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~-FAr~VadrviFmd~G~iie~g~p 220 (240)
T COG1126 142 QQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMG-FAREVADRVIFMDQGKIIEEGPP 220 (240)
T ss_pred HHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhH-HHHHhhheEEEeeCCEEEEecCH
Confidence 99999999999999999999999999999999999999999999999999999997 68899999999999999999988
Q ss_pred hhH
Q 010509 273 SGA 275 (508)
Q Consensus 273 ~~~ 275 (508)
++.
T Consensus 221 ~~~ 223 (240)
T COG1126 221 EEF 223 (240)
T ss_pred HHH
Confidence 865
No 11
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.6e-53 Score=416.35 Aligned_cols=222 Identities=25% Similarity=0.393 Sum_probs=202.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|+++.+... ..+...+|+|||++|++||+++|+|+||||||||+|++.++..|++|+|.++|+++..
T Consensus 1 mI~l~~vsK~~~~~--------~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~ 72 (339)
T COG1135 1 MIELENVSKTFGQT--------GTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTA 72 (339)
T ss_pred CeEEEeeeeeeccC--------CCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEeccc
Confidence 47899999987631 1124579999999999999999999999999999999999999999999999988753
Q ss_pred -------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 118 -------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 -------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
..|+.||++||+..|+...||.||+.|...+. +.+++++++||.++++.+||++.++.+. .+|||
T Consensus 73 l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeia---g~~k~ei~~RV~elLelVgL~dk~~~yP-----~qLSG 144 (339)
T COG1135 73 LSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELA---GVPKAEIKQRVAELLELVGLSDKADRYP-----AQLSG 144 (339)
T ss_pred CChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhc---CCCHHHHHHHHHHHHHHcCChhhhccCc-----hhcCc
Confidence 46789999999999999999999999987764 4678999999999999999999888665 59999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||+|||||+++|+||++|||||+|||.+...|+++|+++.++ |.||+++||+++ .+.+.||||.+|++|+++..
T Consensus 145 GQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~-Vvk~ic~rVavm~~G~lvE~ 223 (339)
T COG1135 145 GQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEME-VVKRICDRVAVLDQGRLVEE 223 (339)
T ss_pred chhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHhhhheEeeCCEEEEe
Confidence 9999999999999999999999999999999999999999999764 999999999996 79999999999999999999
Q ss_pred cChhhHH
Q 010509 270 GEASGAM 276 (508)
Q Consensus 270 G~~~~~~ 276 (508)
|+..++.
T Consensus 224 G~v~~vF 230 (339)
T COG1135 224 GTVSEVF 230 (339)
T ss_pred ccHHHhh
Confidence 9988764
No 12
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.1e-52 Score=422.96 Aligned_cols=225 Identities=34% Similarity=0.520 Sum_probs=203.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++. ++.+|+||||++++||++|++||||||||||+|+|+|+..|++|+|.++|.+..+
T Consensus 4 ~i~~~~l~k~~~~------------~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~ 71 (293)
T COG1131 4 VIEVRNLTKKYGG------------DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK 71 (293)
T ss_pred eeeecceEEEeCC------------CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCcc
Confidence 4788999988751 3789999999999999999999999999999999999999999999999998754
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
..++++||++|++.+++.+||+|++.|.+.++.+. .+..+++++++++.+||.+.++++++ +||+||||
T Consensus 72 ~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~~~~~~~-----~lS~G~kq 143 (293)
T COG1131 72 EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDKANKKVR-----TLSGGMKQ 143 (293)
T ss_pred CHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchhhCcchh-----hcCHHHHH
Confidence 56788999999999999999999999999887532 24566789999999999986666664 99999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCC-CEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGG-RTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
|++||+||+++|+++||||||+||||.++.++++.|++++++| +||++|||+++ ++..+||+|++|++|+++++|+++
T Consensus 144 rl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~-e~~~~~d~v~il~~G~~~~~g~~~ 222 (293)
T COG1131 144 RLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILE-EAEELCDRVIILNDGKIIAEGTPE 222 (293)
T ss_pred HHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHH-HHHHhCCEEEEEeCCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999886 89999999997 577889999999999999999999
Q ss_pred hHHHHHHhcC
Q 010509 274 GAMNYFASIG 283 (508)
Q Consensus 274 ~~~~~f~~~g 283 (508)
++...+....
T Consensus 223 ~l~~~~~~~~ 232 (293)
T COG1131 223 ELKEKFGGKG 232 (293)
T ss_pred HHHHhhccCc
Confidence 9877766533
No 13
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-52 Score=401.85 Aligned_cols=218 Identities=25% Similarity=0.457 Sum_probs=201.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|+|+.|. ++++++|+|++|++||+++++|||||||||+||+|.+++.|++|+|.+||+++..
T Consensus 1 MI~~~nvsk~y~-------------~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~ 67 (309)
T COG1125 1 MIEFENVSKRYG-------------NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISD 67 (309)
T ss_pred CceeeeeehhcC-------------CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeeccc
Confidence 478999998875 5789999999999999999999999999999999999999999999999999864
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc--ccccccCCCCCCccCHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE--CKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSGG 191 (508)
++|+.||||-|.-.|||++||.||+..--.+. ++++++.+++++|+|+.+||++ +++ ++|++||||
T Consensus 68 ~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~---~w~k~~i~~r~~ELl~lvgL~p~~~~~-----RyP~eLSGG 139 (309)
T COG1125 68 LDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLL---GWDKERIKKRADELLDLVGLDPSEYAD-----RYPHELSGG 139 (309)
T ss_pred CCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHhCCCHHHHhh-----cCchhcCcc
Confidence 67999999999999999999999999876654 5688899999999999999975 455 456799999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
|+|||.+||||+.+|+||++|||+++|||.++.++.+.++++.++ |+|||++|||.. ++.+++|||++|++|+++-++
T Consensus 140 QQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDid-EA~kLadri~vm~~G~i~Q~~ 218 (309)
T COG1125 140 QQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDID-EALKLADRIAVMDAGEIVQYD 218 (309)
T ss_pred hhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHH-HHHhhhceEEEecCCeEEEeC
Confidence 999999999999999999999999999999999999999999875 999999999987 577999999999999999999
Q ss_pred ChhhHHH
Q 010509 271 EASGAMN 277 (508)
Q Consensus 271 ~~~~~~~ 277 (508)
+|+++..
T Consensus 219 ~P~~il~ 225 (309)
T COG1125 219 TPDEILA 225 (309)
T ss_pred CHHHHHh
Confidence 9998753
No 14
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=1.6e-52 Score=410.43 Aligned_cols=220 Identities=29% Similarity=0.462 Sum_probs=197.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||++.|+ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|.+|+|.++|+++.+
T Consensus 2 ~L~~~~ls~~y~-------------~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~ 68 (258)
T COG1120 2 MLEVENLSFGYG-------------GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIAS 68 (258)
T ss_pred eeEEEEEEEEEC-------------CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhh
Confidence 589999999986 5789999999999999999999999999999999999999999999999999853
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN-SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
+..+.++||||.....+.+||+|.+.++..-+... ....++.++.++++|+.+|+.+.+++.+. +|||||
T Consensus 69 ~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~-----~LSGGe 143 (258)
T COG1120 69 LSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVD-----ELSGGE 143 (258)
T ss_pred cCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCccc-----ccChhH
Confidence 57789999999998888999999998874321110 11233445689999999999999999886 899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
||||.|||||+++|++|+||||||.||..++.+++++++++++ +|+|||+++||++ .+.++||++++|++|+++..|+
T Consensus 144 rQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN-~A~ryad~~i~lk~G~i~a~G~ 222 (258)
T COG1120 144 RQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLN-LAARYADHLILLKDGKIVAQGT 222 (258)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEeecC
Confidence 9999999999999999999999999999999999999999985 5999999999997 5779999999999999999999
Q ss_pred hhhHH
Q 010509 272 ASGAM 276 (508)
Q Consensus 272 ~~~~~ 276 (508)
|++++
T Consensus 223 p~evl 227 (258)
T COG1120 223 PEEVL 227 (258)
T ss_pred cchhc
Confidence 98764
No 15
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=6.7e-52 Score=394.81 Aligned_cols=220 Identities=30% Similarity=0.463 Sum_probs=200.8
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
...+++++|++++. ++.|++|||++|++||+++||||||||||||||+|.|+++|++|+|.++|+++
T Consensus 6 ~~~I~vr~v~~~fG-------------~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i 72 (263)
T COG1127 6 EPLIEVRGVTKSFG-------------DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDI 72 (263)
T ss_pred cceEEEeeeeeecC-------------CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcch
Confidence 34699999999875 68899999999999999999999999999999999999999999999999987
Q ss_pred Ch-------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCc
Q 010509 116 SN-------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-KNSLIGGPLTRG 187 (508)
Q Consensus 116 ~~-------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~ 187 (508)
.. +.++++|+++|+-.||..|||+||+.|..+-. ...+++..++.+..-|+.+||... ++. +|.+
T Consensus 73 ~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~--~~lp~~~i~~lv~~KL~~VGL~~~~~~~-----~PsE 145 (263)
T COG1127 73 PQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREH--TKLPESLIRELVLMKLELVGLRGAAADL-----YPSE 145 (263)
T ss_pred hccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhh--ccCCHHHHHHHHHHHHHhcCCChhhhhh-----Cchh
Confidence 43 46788999999999999999999999976543 356788888899999999999876 554 4569
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
|||||+||+++|||++.||+++++||||+||||.++..+-+++++|.+. |.|++++|||.. .++..+||+++|.+|++
T Consensus 146 LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~-s~~~i~Drv~~L~~gkv 224 (263)
T COG1127 146 LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD-SLLTIADRVAVLADGKV 224 (263)
T ss_pred hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH-HHHhhhceEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999876 999999999997 58899999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+.+|+++++.
T Consensus 225 ~~~Gt~~el~ 234 (263)
T COG1127 225 IAEGTPEELL 234 (263)
T ss_pred EEeCCHHHHH
Confidence 9999999864
No 16
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.1e-52 Score=384.72 Aligned_cols=235 Identities=25% Similarity=0.358 Sum_probs=212.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|++.+++++|+. ..++++||||+++.||+++|+|||||||||+||+|++++.|++|.|+++|.+..+
T Consensus 1 Ml~v~~l~K~y~~------------~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~ 68 (245)
T COG4555 1 MLEVTDLTKSYGS------------KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR 68 (245)
T ss_pred CeeeeehhhhccC------------HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc
Confidence 4778899888762 2458999999999999999999999999999999999999999999999998743
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
..|++||.++.+..+|..||++|||.|.+++. ++++.+.+++.+++.+.|+|.++.|+++| ++|.|+||
T Consensus 69 ~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~---~l~~~~~kari~~l~k~l~l~~~~~rRv~-----~~S~G~kq 140 (245)
T COG4555 69 DPSFVRRKIGVLFGERGLYARLTARENLKYFARLN---GLSRKEIKARIAELSKRLQLLEYLDRRVG-----EFSTGMKQ 140 (245)
T ss_pred ChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHh---hhhhhHHHHHHHHHHHHhChHHHHHHHHh-----hhchhhHH
Confidence 57889999998889999999999999999875 56778889999999999999999999998 89999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
||+|||||+++|++++|||||||||..+...+.+.++++.++|++||++||.++ ++..+||+|+++++|++++.|++++
T Consensus 141 kV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~-EvealCDrvivlh~Gevv~~gs~~~ 219 (245)
T COG4555 141 KVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQ-EVEALCDRVIVLHKGEVVLEGSIEA 219 (245)
T ss_pred HHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHH-HHHHhhheEEEEecCcEEEcCCHHH
Confidence 999999999999999999999999999999999999999999999999999997 6889999999999999999999988
Q ss_pred HHHHHHhcCCCCCCCCChHHHHHHhhc
Q 010509 275 AMNYFASIGYCPSVPTNPSDFLLDLAS 301 (508)
Q Consensus 275 ~~~~f~~~g~~~p~~~npad~~~~~~~ 301 (508)
....-. ..|+.+-++....
T Consensus 220 l~~r~~--------~~~le~~f~~~l~ 238 (245)
T COG4555 220 LDARTV--------LRNLEEIFAFALK 238 (245)
T ss_pred HHHHHh--------hcCHHHHHHHhhc
Confidence 765543 2567676655543
No 17
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.9e-51 Score=415.78 Aligned_cols=219 Identities=27% Similarity=0.433 Sum_probs=202.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+++|+ +..+|+|+|+++++||+++|+||||||||||||+|||+..|++|+|.++|++++.
T Consensus 3 ~i~l~~v~K~yg-------------~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~ 69 (338)
T COG3839 3 ELELKNVRKSFG-------------SFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTD 69 (338)
T ss_pred EEEEeeeEEEcC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence 689999999975 2229999999999999999999999999999999999999999999999999975
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
-.+|.+++|||+..|||+|||+||+.|+.+.+ ..++++.+++|+++.+.|+|++..|+++ ++||||||||
T Consensus 70 l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~---~~~k~ei~~rV~eva~~L~l~~lL~r~P-----~~LSGGQrQR 141 (338)
T COG3839 70 LPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLR---GVPKAEIDKRVKEVAKLLGLEHLLNRKP-----LQLSGGQRQR 141 (338)
T ss_pred CChhHCCEEEEeCCccccCCCcHHHHhhhhhhhC---CCchHHHHHHHHHHHHHcCChhHHhcCc-----ccCChhhHHH
Confidence 34678999999999999999999999998765 4577889999999999999999999876 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|+|||||+.+|++++||||+|+||...+.++...|+++.++ |.|+|.+|||.. ++..++||+.+|++|++...|+|.+
T Consensus 142 VAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~-EAmtladri~Vm~~G~i~Q~g~p~e 220 (338)
T COG3839 142 VALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQV-EAMTLADRIVVMNDGRIQQVGTPLE 220 (338)
T ss_pred HHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHH-HHHhhCCEEEEEeCCeeeecCChHH
Confidence 99999999999999999999999999999999999999875 999999999976 6789999999999999999999998
Q ss_pred HHHH
Q 010509 275 AMNY 278 (508)
Q Consensus 275 ~~~~ 278 (508)
+.++
T Consensus 221 ly~~ 224 (338)
T COG3839 221 LYER 224 (338)
T ss_pred HhhC
Confidence 8643
No 18
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-51 Score=391.70 Aligned_cols=227 Identities=26% Similarity=0.459 Sum_probs=200.4
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
.+|+++||++.|+ +++++|+|||++|++||++||+||||||||||||+|.|+.+|++|+|.+||.++.
T Consensus 2 ~~i~~~nl~k~yp------------~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~ 69 (258)
T COG3638 2 MMIEVKNLSKTYP------------GGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQIT 69 (258)
T ss_pred ceEEEeeeeeecC------------CCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchh
Confidence 4699999999985 2578999999999999999999999999999999999999999999999998774
Q ss_pred h-------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 010509 117 N-------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN-----SFTEKEKIKCAEAVMTELGLSECKNSLIGGPL 184 (508)
Q Consensus 117 ~-------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 184 (508)
. ++|+++||++|++.|.+.+||.+|+..+..-+.+. ++..++.++++-+.|+.+|+.+.+.++.+
T Consensus 70 ~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~--- 146 (258)
T COG3638 70 KLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAS--- 146 (258)
T ss_pred ccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhc---
Confidence 3 45789999999999999999999998775433221 12223445677789999999999988886
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
.|||||+|||+|||||+.+|+++|.|||+++|||.+++++|+.|+++++ +|.|+|++.||.. .+.++|||++-|++
T Consensus 147 --~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd-lA~~Y~~Riigl~~ 223 (258)
T COG3638 147 --TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD-LAKKYADRIIGLKA 223 (258)
T ss_pred --cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH-HHHHHHhhheEecC
Confidence 8999999999999999999999999999999999999999999999986 5999999999987 57799999999999
Q ss_pred CeEEEEcChhhHHHHHHh
Q 010509 264 GYPLYSGEASGAMNYFAS 281 (508)
Q Consensus 264 G~iv~~G~~~~~~~~f~~ 281 (508)
|+++|+|+++++.+.+-.
T Consensus 224 G~ivfDg~~~el~~~~~~ 241 (258)
T COG3638 224 GRIVFDGPASELTDEALD 241 (258)
T ss_pred CcEEEeCChhhhhHHHHH
Confidence 999999999987665443
No 19
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=6.8e-51 Score=391.70 Aligned_cols=209 Identities=32% Similarity=0.529 Sum_probs=183.2
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++||++.+.... ....+|+++|++|++||+++|+|||||||||||++|+|+..|++|.|.++|+++..
T Consensus 2 i~~~~v~k~y~~~~---------~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l 72 (226)
T COG1136 2 IELKNVSKIYGLGG---------EKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKL 72 (226)
T ss_pred cEEeeeEEEeccCC---------cceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcC
Confidence 56899999876321 12679999999999999999999999999999999999999999999999998752
Q ss_pred ------hc-cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-cccCCCCCCccC
Q 010509 118 ------QM-TRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKN-SLIGGPLTRGVS 189 (508)
Q Consensus 118 ------~~-~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-~~vg~~~~~~LS 189 (508)
.+ ++.+|||+|+..|.|++||.||+.+...+.. .+..+++++++++++.+||.+..+ +++ .+||
T Consensus 73 ~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~---~~~~~~~~~~~~l~~~lgl~~~~~~~~p-----~eLS 144 (226)
T COG1136 73 SEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAG---KSAGRRKRAAEELLEVLGLEDRLLKKKP-----SELS 144 (226)
T ss_pred CHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcC---CChhHHHHHHHHHHHhcCChhhhccCCc-----hhcC
Confidence 23 4579999999999999999999998775542 233356778899999999997766 444 5999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
|||||||+|||||+++|++|+.||||.+||+.++.+++++|++++++ |+|||++|||+. +...|||++.|.+|++
T Consensus 145 GGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~--lA~~~dr~i~l~dG~~ 220 (226)
T COG1136 145 GGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPE--LAKYADRVIELKDGKI 220 (226)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHH--HHHhCCEEEEEeCCee
Confidence 99999999999999999999999999999999999999999999865 999999999974 6689999999999983
No 20
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.1e-51 Score=396.97 Aligned_cols=219 Identities=27% Similarity=0.505 Sum_probs=191.5
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|+++.|+ .+++|+|||+++++|++++|+||||||||||+|+|.|+++|.+|+|.++|++..
T Consensus 3 ~~i~v~nl~v~y~-------------~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~ 69 (254)
T COG1121 3 PMIEVENLTVSYG-------------NRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVR 69 (254)
T ss_pred cEEEEeeeEEEEC-------------CEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccc
Confidence 3699999999986 226999999999999999999999999999999999999999999999999876
Q ss_pred hh-ccccEEEEecCC---CCCCCCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 117 NQ-MTRNTGFVTQED---VLSPYLTVTETMVFTALLQLP--NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 117 ~~-~~~~i~yv~Q~~---~l~~~lTv~E~l~~~~~l~~~--~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
.. -+.+||||||.. .-+| +||+|.+..+...+.+ ...++ +.++.++++|+.+|+.+.+|+.+| +|||
T Consensus 70 ~~~~~~~IgYVPQ~~~~d~~fP-~tV~d~V~~g~~~~~g~~~~~~~-~d~~~v~~aL~~Vgm~~~~~r~i~-----~LSG 142 (254)
T COG1121 70 KRRKRLRIGYVPQKSSVDRSFP-ITVKDVVLLGRYGKKGWFRRLNK-KDKEKVDEALERVGMEDLRDRQIG-----ELSG 142 (254)
T ss_pred ccccCCeEEEcCcccccCCCCC-cCHHHHHHccCcccccccccccH-HHHHHHHHHHHHcCchhhhCCccc-----ccCc
Confidence 53 246799999953 3455 7999999887433221 12233 347889999999999999999998 8999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||+|||.|||||+++|++|+|||||+|+|+.++..+.++|++++++|+||++++||++ .+.++||+|+.|+ +++++.|
T Consensus 143 GQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~-~v~~~~D~vi~Ln-~~~~~~G 220 (254)
T COG1121 143 GQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLG-LVMAYFDRVICLN-RHLIASG 220 (254)
T ss_pred HHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcH-HhHhhCCEEEEEc-CeeEecc
Confidence 9999999999999999999999999999999999999999999988999999999997 5778999999996 5688999
Q ss_pred ChhhHHH
Q 010509 271 EASGAMN 277 (508)
Q Consensus 271 ~~~~~~~ 277 (508)
+++++.+
T Consensus 221 ~~~~~~~ 227 (254)
T COG1121 221 PPEEVLT 227 (254)
T ss_pred ChhhccC
Confidence 9988754
No 21
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-51 Score=417.67 Aligned_cols=219 Identities=27% Similarity=0.441 Sum_probs=201.5
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++++|+ +..+|+|+|++|++||+++|+||||||||||||+|||+..|++|+|.++|++++
T Consensus 4 ~~l~i~~v~k~yg-------------~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~ 70 (352)
T COG3842 4 PALEIRNVSKSFG-------------DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDIT 70 (352)
T ss_pred ceEEEEeeeeecC-------------CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECC
Confidence 4689999999875 578999999999999999999999999999999999999999999999999997
Q ss_pred h--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 117 N--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 117 ~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
. -.+|.+|+|||+..|||+|||+||+.|+.+.+ ....+++.+++++++++.++|++.+++++ .+|||||||
T Consensus 71 ~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~--~~~~~~~i~~rv~e~L~lV~L~~~~~R~p-----~qLSGGQqQ 143 (352)
T COG3842 71 DVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVR--KKLKKAEIKARVEEALELVGLEGFADRKP-----HQLSGGQQQ 143 (352)
T ss_pred CCChhhcccceeecCcccCCCCcHHHHhhhhhhhc--CCCCHHHHHHHHHHHHHHcCchhhhhhCh-----hhhChHHHH
Confidence 5 45789999999999999999999999998743 33456778899999999999999888765 599999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
||+|||||+.+|++||||||.|+||..-+.++...|+++.++ |.|.|++|||.. +...++|||.+|++|++.-.|+|+
T Consensus 144 RVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqe-EAl~msDrI~Vm~~G~I~Q~gtP~ 222 (352)
T COG3842 144 RVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQE-EALAMSDRIAVMNDGRIEQVGTPE 222 (352)
T ss_pred HHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHH-HHhhhccceEEccCCceeecCCHH
Confidence 999999999999999999999999999999999999999764 999999999976 577999999999999999999999
Q ss_pred hHH
Q 010509 274 GAM 276 (508)
Q Consensus 274 ~~~ 276 (508)
++.
T Consensus 223 eiY 225 (352)
T COG3842 223 EIY 225 (352)
T ss_pred HHh
Confidence 873
No 22
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.3e-51 Score=391.91 Aligned_cols=204 Identities=31% Similarity=0.533 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++++++.+. ..++|+|+|++|++||+++|+||||||||||||+|+|+.+|++|+|.++|+++ .
T Consensus 3 ~l~i~~v~~~f~-------------~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v-~ 68 (248)
T COG1116 3 LLEIEGVSKSFG-------------GVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPV-T 68 (248)
T ss_pred eEEEEeeEEEeC-------------ceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccc-C
Confidence 588999999876 36899999999999999999999999999999999999999999999999998 4
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVS 197 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 197 (508)
.....++||+|++.|+|-+||.||+.++...+. .++++++++++++|+.+||.+..|++ |++|||||||||+
T Consensus 69 ~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~-----P~qLSGGMrQRVa 140 (248)
T COG1116 69 GPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKY-----PHQLSGGMRQRVA 140 (248)
T ss_pred CCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcC-----ccccChHHHHHHH
Confidence 456789999999999999999999999876642 45677778999999999999998865 4699999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 198 IGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 198 Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
|||||+.+|++|+||||+++||..++.++.+.|.++.+ .++||+++|||.++ +..++|||++|+++
T Consensus 141 iARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~E-Av~LsdRivvl~~~ 207 (248)
T COG1116 141 IARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDE-AVYLADRVVVLSNR 207 (248)
T ss_pred HHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHH-HHhhhCEEEEecCC
Confidence 99999999999999999999999999999999999865 59999999999975 56899999999984
No 23
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=1.3e-49 Score=405.53 Aligned_cols=220 Identities=25% Similarity=0.438 Sum_probs=199.0
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++||+++++ ++.+|+||||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 6 ~~i~i~~l~k~~~-------------~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~ 72 (306)
T PRK13537 6 APIDFRNVEKRYG-------------DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVP 72 (306)
T ss_pred ceEEEEeEEEEEC-------------CeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecc
Confidence 3699999999875 357999999999999999999999999999999999999999999999999875
Q ss_pred h---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 117 N---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 117 ~---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
. ..++.+||++|++.+++.+||+||+.+.+..+ ..+..+..++++++++.++|.+.+++.++ +||||||
T Consensus 73 ~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 144 (306)
T PRK13537 73 SRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF---GLSAAAARALVPPLLEFAKLENKADAKVG-----ELSGGMK 144 (306)
T ss_pred cchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCchh-----hCCHHHH
Confidence 3 45678999999999999999999999876553 23445556778999999999998888875 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
||++||+||+++|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.++|||+++|++|++++.|+++
T Consensus 145 qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~-e~~~~~d~i~il~~G~i~~~g~~~ 223 (306)
T PRK13537 145 RRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFME-EAERLCDRLCVIEEGRKIAEGAPH 223 (306)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999999878999999999987 578899999999999999999998
Q ss_pred hHHHH
Q 010509 274 GAMNY 278 (508)
Q Consensus 274 ~~~~~ 278 (508)
++.+-
T Consensus 224 ~l~~~ 228 (306)
T PRK13537 224 ALIES 228 (306)
T ss_pred HHHhc
Confidence 87653
No 24
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.8e-50 Score=396.41 Aligned_cols=221 Identities=29% Similarity=0.460 Sum_probs=199.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCE---e
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK---P 114 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~---~ 114 (508)
+++++++++.++ ...+++|||++|+.||++|++||||||||||||+|||+..|++|.|.+||+ +
T Consensus 2 ~i~i~~~~~~~~-------------~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D 68 (345)
T COG1118 2 SIRINNVKKRFG-------------AFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFD 68 (345)
T ss_pred ceeehhhhhhcc-------------cccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccc
Confidence 567777777654 467899999999999999999999999999999999999999999999999 5
Q ss_pred CCh--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 115 FSN--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 115 ~~~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
.++ ...|+||||+|+..+|+.|||.+|+.|+...+ ....++.+.+.+++++|+.+.|++.++++ |.+|||||
T Consensus 69 ~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~-~~~p~~~~~r~rv~elL~lvqL~~la~ry-----P~QLSGGQ 142 (345)
T COG1118 69 VSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVR-KERPSEAEIRARVEELLRLVQLEGLADRY-----PAQLSGGQ 142 (345)
T ss_pred hhccchhhcceeEEEechhhcccchHHhhhhhccccc-ccCCChhhHHHHHHHHHHHhcccchhhcC-----chhcChHH
Confidence 543 23568999999999999999999999998766 23346778889999999999999988765 56999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
||||++||||+.+|++|+||||+++||...+.++.+.|+++.++ |.|.+++|||+. ++.++||||++|++|+|...|+
T Consensus 143 rQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~e-ea~~ladrvvvl~~G~Ieqvg~ 221 (345)
T COG1118 143 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQE-EALELADRVVVLNQGRIEQVGP 221 (345)
T ss_pred HHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHH-HHHhhcceEEEecCCeeeeeCC
Confidence 99999999999999999999999999999999999999999876 999999999986 6889999999999999999999
Q ss_pred hhhHHHH
Q 010509 272 ASGAMNY 278 (508)
Q Consensus 272 ~~~~~~~ 278 (508)
++++.+.
T Consensus 222 p~ev~~~ 228 (345)
T COG1118 222 PDEVYDH 228 (345)
T ss_pred HHHHhcC
Confidence 9988543
No 25
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-49 Score=407.60 Aligned_cols=218 Identities=26% Similarity=0.417 Sum_probs=196.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|++++++ +++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++..
T Consensus 3 ~l~i~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~ 70 (356)
T PRK11650 3 GLKLQAVRKSYD------------GKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNE 70 (356)
T ss_pred EEEEEeEEEEeC------------CCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCC
Confidence 589999999873 13579999999999999999999999999999999999999999999999998853
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.+|||+|++.++|++||+||+.|+...+ ..++.+.+++++++++.+||.+..++.+ ++||||||||
T Consensus 71 ~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq~QR 142 (356)
T PRK11650 71 LEPADRDIAMVFQNYALYPHMSVRENMAYGLKIR---GMPKAEIEERVAEAARILELEPLLDRKP-----RELSGGQRQR 142 (356)
T ss_pred CCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHH
Confidence 23578999999999999999999999986542 2355666788999999999998888776 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|+|||||+.+|++|+||||||+||+.++..+.+.|+++.++ |.|+|++|||+. ++..++|++++|++|+++..|++++
T Consensus 143 valARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~l~D~i~vl~~G~i~~~g~~~~ 221 (356)
T PRK11650 143 VAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQV-EAMTLADRVVVMNGGVAEQIGTPVE 221 (356)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEECCHHH
Confidence 99999999999999999999999999999999999999875 999999999986 5789999999999999999999987
Q ss_pred HH
Q 010509 275 AM 276 (508)
Q Consensus 275 ~~ 276 (508)
+.
T Consensus 222 ~~ 223 (356)
T PRK11650 222 VY 223 (356)
T ss_pred HH
Confidence 63
No 26
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=8e-49 Score=404.32 Aligned_cols=221 Identities=24% Similarity=0.381 Sum_probs=196.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++++.. .+.+++|+||||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++..
T Consensus 1 mI~~~~lsk~y~~~---------~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~ 71 (343)
T TIGR02314 1 MIKLSNITKVFHQG---------TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTT 71 (343)
T ss_pred CEEEEEEEEEECCC---------CcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc
Confidence 37899999998521 012579999999999999999999999999999999999999999999999998753
Q ss_pred -------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 118 -------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 -------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
..++.+||++|+..+++.+||+||+.+..... ..++++.++++.++++.+||.+..|+.+ ++|||
T Consensus 72 ~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~v~e~l~~vgL~~~~~~~~-----~~LSg 143 (343)
T TIGR02314 72 LSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEIKRKVTELLALVGLGDKHDSYP-----SNLSG 143 (343)
T ss_pred CCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCH
Confidence 23678999999999999999999999876432 2355667778999999999998888765 49999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||+|||||+++|++|+||||||+||+.++..+++.|++++++ |.|||++||+++ .+.++||++++|++|+++..
T Consensus 144 GqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~-~v~~~~d~v~vl~~G~iv~~ 222 (343)
T TIGR02314 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIEQ 222 (343)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999875 999999999986 57789999999999999999
Q ss_pred cChhhHH
Q 010509 270 GEASGAM 276 (508)
Q Consensus 270 G~~~~~~ 276 (508)
|+++++.
T Consensus 223 g~~~~v~ 229 (343)
T TIGR02314 223 GTVSEIF 229 (343)
T ss_pred cCHHHHH
Confidence 9988763
No 27
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=1.1e-48 Score=403.54 Aligned_cols=223 Identities=25% Similarity=0.404 Sum_probs=200.1
Q ss_pred CCceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCE
Q 010509 34 KHPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK 113 (508)
Q Consensus 34 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~ 113 (508)
+....++++||+++++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+
T Consensus 37 ~~~~~i~i~nl~k~y~-------------~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~ 103 (340)
T PRK13536 37 MSTVAIDLAGVSKSYG-------------DKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGV 103 (340)
T ss_pred CCceeEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCE
Confidence 3455799999999875 457999999999999999999999999999999999999999999999999
Q ss_pred eCCh---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 114 PFSN---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 114 ~~~~---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
++.. ..++.+||++|++.+++.+||+||+.+....+ ..+..+..++++++++.+||.+..++.++ +|||
T Consensus 104 ~~~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~-----~LS~ 175 (340)
T PRK13536 104 PVPARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADARVS-----DLSG 175 (340)
T ss_pred ECCcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhCCChh-----hCCH
Confidence 8753 45678999999999999999999999766543 12344555678899999999998888875 8999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
|||||++||+||+++|++|+|||||+|||+.++.++++.|++++++|+|||++||+++ ++.++||++++|++|++++.|
T Consensus 176 G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~-e~~~~~d~i~il~~G~i~~~g 254 (340)
T PRK13536 176 GMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLEAGRKIAEG 254 (340)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999999999999999999999878999999999986 688999999999999999999
Q ss_pred ChhhHHHH
Q 010509 271 EASGAMNY 278 (508)
Q Consensus 271 ~~~~~~~~ 278 (508)
++++..+.
T Consensus 255 ~~~~l~~~ 262 (340)
T PRK13536 255 RPHALIDE 262 (340)
T ss_pred CHHHHHhh
Confidence 99988654
No 28
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=1.4e-49 Score=366.17 Aligned_cols=213 Identities=29% Similarity=0.454 Sum_probs=194.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++|+|+++.|.. ++.+|+||||++++||++-|.||||||||||||+|.+..+|++|+|.+||+++++
T Consensus 1 mI~f~~V~k~Y~~------------g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~ 68 (223)
T COG2884 1 MIRFENVSKAYPG------------GREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSR 68 (223)
T ss_pred CeeehhhhhhcCC------------CchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeeccc
Confidence 4789999998862 3679999999999999999999999999999999999999999999999999853
Q ss_pred -------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 118 -------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 -------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
..||+||+|+||..|.+..||+||+.|+.+.. +.++++.+++|.++|+.+||.+.++... .+|||
T Consensus 69 l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~---G~~~~~i~~rV~~~L~~VgL~~k~~~lP-----~~LSG 140 (223)
T COG2884 69 LKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVI---GKPPREIRRRVSEVLDLVGLKHKARALP-----SQLSG 140 (223)
T ss_pred ccccccchhhheeeeEeeeccccccchHhhhhhhhhhcc---CCCHHHHHHHHHHHHHHhccchhhhcCc-----cccCc
Confidence 36889999999999999999999999987654 4567888999999999999999887654 59999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||||||+||||++.+|++|+.||||-+|||..+.+|++++.++.+.|+||+++|||.+ .+.++-.|++.|++|+++.+.
T Consensus 141 GEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~-lv~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLE-LVNRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred hHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHH-HHHhccCcEEEEeCCEEEecc
Confidence 9999999999999999999999999999999999999999999999999999999965 577888999999999998765
Q ss_pred C
Q 010509 271 E 271 (508)
Q Consensus 271 ~ 271 (508)
.
T Consensus 220 ~ 220 (223)
T COG2884 220 S 220 (223)
T ss_pred c
Confidence 3
No 29
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=9.6e-49 Score=405.85 Aligned_cols=218 Identities=28% Similarity=0.458 Sum_probs=197.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||+++++ .+.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~ 70 (353)
T TIGR03265 4 YLSIDNIRKRFG-------------AFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITR 70 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCC
Confidence 589999999875 3569999999999999999999999999999999999999999999999998853
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.+|||+|+..+||.+||+||+.|+...+ ..++.+.+++++++++.+||.+..|+.+ ++||||||||
T Consensus 71 ~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~---~~~~~~~~~~~~~~l~~l~L~~~~~~~~-----~~LSgGq~QR 142 (353)
T TIGR03265 71 LPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNR---GMGRAEVAERVAELLDLVGLPGSERKYP-----GQLSGGQQQR 142 (353)
T ss_pred CCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhCCh-----hhCCHHHHHH
Confidence 34678999999999999999999999986543 2456677788999999999999888765 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|+|||||+.+|+++||||||++||+.++.++.+.|+++.++ |.|+|++|||++ ++..++||+++|++|+++..|++++
T Consensus 143 vaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~-ea~~l~d~i~vl~~G~i~~~g~~~~ 221 (353)
T TIGR03265 143 VALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQE-EALSMADRIVVMNHGVIEQVGTPQE 221 (353)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999765 999999999986 5789999999999999999999987
Q ss_pred HHH
Q 010509 275 AMN 277 (508)
Q Consensus 275 ~~~ 277 (508)
+.+
T Consensus 222 ~~~ 224 (353)
T TIGR03265 222 IYR 224 (353)
T ss_pred HHh
Confidence 754
No 30
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-48 Score=383.20 Aligned_cols=216 Identities=28% Similarity=0.470 Sum_probs=190.3
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~ 67 (235)
T cd03261 1 IELRGLTKSFG-------------GRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGL 67 (235)
T ss_pred CeEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccc
Confidence 46789998874 3569999999999999999999999999999999999999999999999998642
Q ss_pred ------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 118 ------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
..++.++|++|++.+++.+||.||+.+...... ..++++..++++++++.+||.+..++.++ +||||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 140 (235)
T cd03261 68 SEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPA-----ELSGG 140 (235)
T ss_pred ChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHH
Confidence 245679999999999999999999988653221 22445556778899999999887777664 89999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
|||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++ .+..+||++++|++|++++.|
T Consensus 141 ~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~-~~~~~~d~v~~l~~G~i~~~g 219 (235)
T cd03261 141 MKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLD-TAFAIADRIAVLYDGKIVAEG 219 (235)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhcCEEEEEECCeEEEec
Confidence 999999999999999999999999999999999999999999874 899999999986 577899999999999999999
Q ss_pred ChhhH
Q 010509 271 EASGA 275 (508)
Q Consensus 271 ~~~~~ 275 (508)
++++.
T Consensus 220 ~~~~~ 224 (235)
T cd03261 220 TPEEL 224 (235)
T ss_pred CHHHH
Confidence 88765
No 31
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-48 Score=403.25 Aligned_cols=217 Identities=22% Similarity=0.434 Sum_probs=197.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++..
T Consensus 6 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~ 72 (351)
T PRK11432 6 FVVLKNITKRFG-------------SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTH 72 (351)
T ss_pred EEEEEeEEEEEC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCC
Confidence 699999999875 3569999999999999999999999999999999999999999999999998853
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..++.+ ++||||||||
T Consensus 73 ~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~~gl~~~~~r~~-----~~LSgGq~QR 144 (351)
T PRK11432 73 RSIQQRDICMVFQSYALFPHMSLGENVGYGLKML---GVPKEERKQRVKEALELVDLAGFEDRYV-----DQISGGQQQR 144 (351)
T ss_pred CCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHH
Confidence 33578999999999999999999999987543 2456677788999999999998887665 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|+|||||+.+|++|+|||||+|||+.++.++.+.|+++.++ |+|+|++|||++ ++..++||+++|++|+++..|++++
T Consensus 145 VaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-e~~~laD~i~vm~~G~i~~~g~~~~ 223 (351)
T PRK11432 145 VALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQS-EAFAVSDTVIVMNKGKIMQIGSPQE 223 (351)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999765 999999999986 5789999999999999999999987
Q ss_pred HH
Q 010509 275 AM 276 (508)
Q Consensus 275 ~~ 276 (508)
+.
T Consensus 224 ~~ 225 (351)
T PRK11432 224 LY 225 (351)
T ss_pred HH
Confidence 64
No 32
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=3.1e-48 Score=402.87 Aligned_cols=218 Identities=26% Similarity=0.439 Sum_probs=197.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcc--cEEEECCEeC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN--GRITYNGKPF 115 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~--G~I~~~G~~~ 115 (508)
.|+++|++++++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+|++ |+|.++|+++
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~ 71 (362)
T TIGR03258 5 GIRIDHLRVAYG-------------ANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDL 71 (362)
T ss_pred EEEEEEEEEEEC-------------CeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEEC
Confidence 488999999875 3569999999999999999999999999999999999999999 9999999987
Q ss_pred Ch--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 116 SN--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 116 ~~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
.. ..++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||++..++.+. +||||||
T Consensus 72 ~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~~~~~-----~LSgGq~ 143 (362)
T TIGR03258 72 THAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQ---KMPKADIAERVADALKLVGLGDAAAHLPA-----QLSGGMQ 143 (362)
T ss_pred CCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCCchhhCChh-----hCCHHHH
Confidence 53 23578999999999999999999999986543 24556667789999999999998887764 9999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC--CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG--GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
|||+|||||+.+|++|+|||||+|||+.++.++.+.|+++.++ |.|+|++|||++ ++..++||+++|++|+++..|+
T Consensus 144 QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~-ea~~l~dri~vl~~G~i~~~g~ 222 (362)
T TIGR03258 144 QRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQD-DALTLADKAGIMKDGRLAAHGE 222 (362)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999999999999999876 899999999986 5789999999999999999999
Q ss_pred hhhHHH
Q 010509 272 ASGAMN 277 (508)
Q Consensus 272 ~~~~~~ 277 (508)
++++.+
T Consensus 223 ~~~~~~ 228 (362)
T TIGR03258 223 PQALYD 228 (362)
T ss_pred HHHHHh
Confidence 987743
No 33
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=4.1e-48 Score=401.11 Aligned_cols=220 Identities=25% Similarity=0.399 Sum_probs=196.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++..
T Consensus 2 ~L~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~ 68 (353)
T PRK10851 2 SIEIANIKKSFG-------------RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSR 68 (353)
T ss_pred EEEEEEEEEEeC-------------CeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence 588999999875 3569999999999999999999999999999999999999999999999998753
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
..++.++||+|++.++|.+||+||+.|....... ...+.++.+++++++++.++|.+..++++ ++|||||||
T Consensus 69 ~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~LSgGq~Q 143 (353)
T PRK10851 69 LHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYP-----AQLSGGQKQ 143 (353)
T ss_pred CCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHH
Confidence 3356899999999999999999999987643211 12345566778999999999998887765 499999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
||+|||||+.+|++|+|||||+|||+.++.++.+.|++++++ |.|+|++|||++ ++..++||+++|++|+++..|+++
T Consensus 144 RvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~-ea~~~~Dri~vl~~G~i~~~g~~~ 222 (353)
T PRK10851 144 RVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQE-EAMEVADRVVVMSQGNIEQAGTPD 222 (353)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999875 899999999986 578899999999999999999998
Q ss_pred hHH
Q 010509 274 GAM 276 (508)
Q Consensus 274 ~~~ 276 (508)
++.
T Consensus 223 ~i~ 225 (353)
T PRK10851 223 QVW 225 (353)
T ss_pred HHH
Confidence 874
No 34
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-48 Score=374.12 Aligned_cols=222 Identities=26% Similarity=0.416 Sum_probs=193.3
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
.+++++||++.++... ...++|+||||++++||.++|+|+||||||||.++|+|+.+|++|+|.++|++..
T Consensus 2 ~~l~v~nl~~~y~~~~---------~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~ 72 (252)
T COG1124 2 TLLSVRNLSIVYGGGK---------FAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLA 72 (252)
T ss_pred ceEEEeceEEEecCCc---------chhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccC
Confidence 3689999999987321 1236999999999999999999999999999999999999999999999998775
Q ss_pred h-----hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCcc
Q 010509 117 N-----QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGV 188 (508)
Q Consensus 117 ~-----~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~L 188 (508)
+ .+++.+.+||||+ .+.|..||++.|.-+... .+.++.+ +++.++++.+||.+ .+++ +|.+|
T Consensus 73 ~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~---~~~~~~~--~~i~~~L~~VgL~~~~l~R-----~P~eL 142 (252)
T COG1124 73 PKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRP---HGLSKSQ--QRIAELLDQVGLPPSFLDR-----RPHEL 142 (252)
T ss_pred ccccchhhccceeEEecCCccccCcchhHHHHHhhhhcc---CCccHHH--HHHHHHHHHcCCCHHHHhc-----Cchhc
Confidence 4 3577899999997 589999999999876543 2333333 34899999999974 3444 45699
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||||++|||||+.+|++|+||||||+||+..+.+|+++|.+++++ |.|.|++|||.+ .+.++|||+++|++|+++
T Consensus 143 SGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~-~v~~~cdRi~Vm~~G~iv 221 (252)
T COG1124 143 SGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLA-LVEHMCDRIAVMDNGQIV 221 (252)
T ss_pred ChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHH-HHHHHhhheeeeeCCeEE
Confidence 999999999999999999999999999999999999999999999875 899999999986 688999999999999999
Q ss_pred EEcChhhHHHH
Q 010509 268 YSGEASGAMNY 278 (508)
Q Consensus 268 ~~G~~~~~~~~ 278 (508)
+.++.+++.+.
T Consensus 222 E~~~~~~l~~~ 232 (252)
T COG1124 222 EIGPTEELLSH 232 (252)
T ss_pred EeechhhhhcC
Confidence 99999987655
No 35
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=6.3e-48 Score=402.08 Aligned_cols=218 Identities=27% Similarity=0.408 Sum_probs=196.8
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++|++++++ ++++|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.
T Consensus 13 ~~L~l~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~ 79 (375)
T PRK09452 13 PLVELRGISKSFD-------------GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDIT 79 (375)
T ss_pred ceEEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 3699999999875 356999999999999999999999999999999999999999999999999875
Q ss_pred h--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 117 N--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 117 ~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
. ..++.+|||+|++.++|.+||+||+.|+...+ ..++.+.+++++++++.+||.+..++++ .+|||||||
T Consensus 80 ~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----~~LSgGq~Q 151 (375)
T PRK09452 80 HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQ---KTPAAEITPRVMEALRMVQLEEFAQRKP-----HQLSGGQQQ 151 (375)
T ss_pred CCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCHHHHH
Confidence 3 23578999999999999999999999986532 2355566778999999999999888766 499999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
||+|||||+.+|++|||||||+|||..++..+.+.|++++++ |.|+|++|||+. ++..++|++++|++|+++..|+++
T Consensus 152 RVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~ 230 (375)
T PRK09452 152 RVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQE-EALTMSDRIVVMRDGRIEQDGTPR 230 (375)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999999865 999999999986 578899999999999999999988
Q ss_pred hHH
Q 010509 274 GAM 276 (508)
Q Consensus 274 ~~~ 276 (508)
++.
T Consensus 231 ~i~ 233 (375)
T PRK09452 231 EIY 233 (375)
T ss_pred HHH
Confidence 763
No 36
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=7.2e-48 Score=392.28 Aligned_cols=219 Identities=25% Similarity=0.417 Sum_probs=195.3
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
+.++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 3 ~~i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 69 (303)
T TIGR01288 3 VAIDLVGVSKSYG-------------DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVP 69 (303)
T ss_pred cEEEEEeEEEEeC-------------CeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECc
Confidence 4689999999875 356999999999999999999999999999999999999999999999999874
Q ss_pred h---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 117 N---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 117 ~---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
. ..++.+||++|++.+++.+||+||+.+..... ..+.++.+++++++++.++|.+..++.++ +||||||
T Consensus 70 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~ll~~~~l~~~~~~~~~-----~LSgG~~ 141 (303)
T TIGR01288 70 SRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYF---GMSTREIEAVIPSLLEFARLESKADVRVA-----LLSGGMK 141 (303)
T ss_pred ccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCchh-----hCCHHHH
Confidence 3 34678999999999999999999998755432 12344455678889999999988887775 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ ++.++||++++|++|++++.|+++
T Consensus 142 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 220 (303)
T TIGR01288 142 RRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFME-EAERLCDRLCVLESGRKIAEGRPH 220 (303)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHH
Confidence 9999999999999999999999999999999999999999878999999999986 577899999999999999999998
Q ss_pred hHHH
Q 010509 274 GAMN 277 (508)
Q Consensus 274 ~~~~ 277 (508)
++.+
T Consensus 221 ~~~~ 224 (303)
T TIGR01288 221 ALID 224 (303)
T ss_pred HHHh
Confidence 8754
No 37
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.1e-48 Score=373.65 Aligned_cols=214 Identities=29% Similarity=0.458 Sum_probs=189.5
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..
T Consensus 1 i~~~~~~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~ 67 (220)
T cd03265 1 IEVENLVKKYG-------------DFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE 67 (220)
T ss_pred CEEEEEEEEEC-------------CEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC
Confidence 46789998874 3569999999999999999999999999999999999999999999999988642
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|++.+++.+||+||+.+....+ ..+.++..++++++++.+||.+..++.++ .||||||||
T Consensus 68 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 139 (220)
T cd03265 68 PREVRRRIGIVFQDLSVDDELTGWENLYIHARLY---GVPGAERRERIDELLDFVGLLEAADRLVK-----TYSGGMRRR 139 (220)
T ss_pred hHHHhhcEEEecCCccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHH
Confidence 34567999999999999999999998875442 12344455678999999999887777664 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
++||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+...+|++++|++|+++..|++++
T Consensus 140 ~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 140 LEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYME-EAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEeCChHH
Confidence 99999999999999999999999999999999999999876 899999999986 5778899999999999999988765
No 38
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=5.7e-48 Score=392.83 Aligned_cols=208 Identities=27% Similarity=0.424 Sum_probs=187.6
Q ss_pred ccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh---hccccEEEEecCCCCCCCCCH
Q 010509 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN---QMTRNTGFVTQEDVLSPYLTV 138 (508)
Q Consensus 62 ~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l~~~lTv 138 (508)
+++.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. ..++.+||++|++.+++.+||
T Consensus 4 ~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 83 (302)
T TIGR01188 4 GDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDEDLTG 83 (302)
T ss_pred CCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCCCcH
Confidence 35679999999999999999999999999999999999999999999999998743 346679999999999999999
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 010509 139 TETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGL 218 (508)
Q Consensus 139 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgL 218 (508)
+||+.+.+..+ ..+..+..++++++++.+||.+..++.++ +|||||||||+||+||+.+|++|+|||||+||
T Consensus 84 ~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gL 155 (302)
T TIGR01188 84 RENLEMMGRLY---GLPKDEAEERAEELLELFELGEAADRPVG-----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGL 155 (302)
T ss_pred HHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhCCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence 99999876543 23344556678999999999988887765 89999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHHH
Q 010509 219 DSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNY 278 (508)
Q Consensus 219 D~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~~ 278 (508)
|+.++..+++.|++++++|+|||++||+++ ++.++||++++|++|++++.|+++++.+-
T Consensus 156 D~~~~~~l~~~l~~~~~~g~tvi~~sH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 156 DPRTRRAIWDYIRALKEEGVTILLTTHYME-EADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999877999999999986 67889999999999999999999887654
No 39
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.1e-48 Score=371.70 Aligned_cols=210 Identities=31% Similarity=0.485 Sum_probs=184.6
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~ 67 (213)
T cd03259 1 LELKGLSKTYG-------------SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGV 67 (213)
T ss_pred CeeeeeEEEeC-------------CeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcC
Confidence 46789998875 3569999999999999999999999999999999999999999999999998743
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++|++.+++.+|++||+.+..... ....++.+++++++++.+||.+..++.+. .||||||||+
T Consensus 68 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl 139 (213)
T cd03259 68 PPERRNIGMVFQDYALFPHLTVAENIAFGLKLR---GVPKAEIRARVRELLELVGLEGLLNRYPH-----ELSGGQQQRV 139 (213)
T ss_pred chhhccEEEEcCchhhccCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHHHH
Confidence 23567999999999999999999998865432 12344455678899999999987777664 8999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.++||++++|++|++++.|
T Consensus 140 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 140 ALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE-EALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999986 4899999999986 577899999999999998765
No 40
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7.7e-48 Score=376.16 Aligned_cols=219 Identities=28% Similarity=0.472 Sum_probs=196.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC-
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS- 116 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~- 116 (508)
.++++|++|+++. .+.+|+|+|+++++||.++|+|+||||||||+++|+|+++|++|+|.++|.+..
T Consensus 3 ~i~~~~l~~~y~~------------~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~ 70 (235)
T COG1122 3 MIEAENLSFRYPG------------RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSS 70 (235)
T ss_pred eEEEEEEEEEcCC------------CceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccc
Confidence 5889999999762 257999999999999999999999999999999999999999999999999865
Q ss_pred -h---hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 117 -N---QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 117 -~---~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
. ..++.+|||+|++ .++. -||.|.+.|+.... ..++++.+++++++++.+|+.+.+++.+ ..|||
T Consensus 71 ~~~~~~~~~~vG~VfQnpd~q~~~-~tV~~evafg~~n~---g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----~~LSG 141 (235)
T COG1122 71 EKSLLELRQKVGLVFQNPDDQLFG-PTVEDEVAFGLENL---GLPREEIEERVAEALELVGLEELLDRPP-----FNLSG 141 (235)
T ss_pred hhhHHHhhcceEEEEECccccccc-CcHHHHHhhchhhc---CCCHHHHHHHHHHHHHHcCchhhccCCc-----cccCC
Confidence 1 5788999999997 4444 59999999987543 4567788999999999999999987655 59999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||+||.+|+.+|++|+|||||||||+.++.++++.+++|.++ |+|+|++|||.+ .+..++||+++|++|+++++
T Consensus 142 GqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~-~~~~~ad~v~vl~~G~i~~~ 220 (235)
T COG1122 142 GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLE-LVLEYADRVVVLDDGKILAD 220 (235)
T ss_pred cceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHH-HHHhhCCEEEEEECCEEeec
Confidence 9999999999999999999999999999999999999999999877 799999999986 57789999999999999999
Q ss_pred cChhhHHHH
Q 010509 270 GEASGAMNY 278 (508)
Q Consensus 270 G~~~~~~~~ 278 (508)
|++.++.+-
T Consensus 221 g~p~~i~~~ 229 (235)
T COG1122 221 GDPAEIFND 229 (235)
T ss_pred CCHHHHhhh
Confidence 998776543
No 41
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-47 Score=398.69 Aligned_cols=219 Identities=24% Similarity=0.402 Sum_probs=197.1
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++.
T Consensus 18 ~~l~l~~v~~~~~-------------~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~ 84 (377)
T PRK11607 18 PLLEIRNLTKSFD-------------GQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS 84 (377)
T ss_pred ceEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECC
Confidence 3699999999875 356999999999999999999999999999999999999999999999999875
Q ss_pred h--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 117 N--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 117 ~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
. ..++.+|||+|++.+||.+||.||+.|+...+ ..++.+.+++++++++.+||.+..++.+ ++|||||||
T Consensus 85 ~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~---~~~~~~~~~~v~~~l~~l~L~~~~~~~~-----~~LSgGq~Q 156 (377)
T PRK11607 85 HVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQD---KLPKAEIASRVNEMLGLVHMQEFAKRKP-----HQLSGGQRQ 156 (377)
T ss_pred CCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHH
Confidence 3 34678999999999999999999999986543 2355667788999999999998887765 499999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
||+|||||+.+|++|||||||++||..++..+.+.|+++.+ .|.|+|++|||++ ++..++||+++|++|+++..|+++
T Consensus 157 RVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~laDri~vl~~G~i~~~g~~~ 235 (377)
T PRK11607 157 RVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQE-EAMTMAGRIAIMNRGKFVQIGEPE 235 (377)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEeCCEEEEEcCHH
Confidence 99999999999999999999999999999999999999875 4999999999986 578999999999999999999998
Q ss_pred hHHH
Q 010509 274 GAMN 277 (508)
Q Consensus 274 ~~~~ 277 (508)
++.+
T Consensus 236 ~~~~ 239 (377)
T PRK11607 236 EIYE 239 (377)
T ss_pred HHHh
Confidence 7643
No 42
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-47 Score=399.05 Aligned_cols=217 Identities=28% Similarity=0.445 Sum_probs=194.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 3 ~l~i~~l~~~~~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~ 69 (369)
T PRK11000 3 SVTLRNVTKAYG-------------DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMND 69 (369)
T ss_pred EEEEEEEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCC
Confidence 488999999875 3569999999999999999999999999999999999999999999999998753
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++||+|+..+++.+||+||+.|....+ ..+.++.+++++++++.+||.+..++.++ +||||||||
T Consensus 70 ~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~lgL~~~~~~~~~-----~LSgGq~QR 141 (369)
T PRK11000 70 VPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEEINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQR 141 (369)
T ss_pred CCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHH
Confidence 23567999999999999999999999876533 23455566789999999999988887764 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|+|||||+.+|++|||||||+|||+.++..+.+.|+++.++ |.|+|++|||++ ++..++|++++|++|+++..|++++
T Consensus 142 vaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~-~~~~~~d~i~vl~~G~i~~~g~~~~ 220 (369)
T PRK11000 142 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLE 220 (369)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999765 899999999986 5778999999999999999999887
Q ss_pred HH
Q 010509 275 AM 276 (508)
Q Consensus 275 ~~ 276 (508)
+.
T Consensus 221 i~ 222 (369)
T PRK11000 221 LY 222 (369)
T ss_pred HH
Confidence 64
No 43
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-47 Score=376.11 Aligned_cols=219 Identities=25% Similarity=0.396 Sum_probs=190.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~ 68 (239)
T cd03296 2 SIEVRNVSKRFG-------------DFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATD 68 (239)
T ss_pred EEEEEeEEEEEC-------------CEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCc
Confidence 588999999875 3569999999999999999999999999999999999999999999999998743
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
..++.++|++|++.+++.+||+||+.+....+.. ......+..++++++++.+||.+..++.++ +|||||||
T Consensus 69 ~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 143 (239)
T cd03296 69 VPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPA-----QLSGGQRQ 143 (239)
T ss_pred CCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChh-----hCCHHHHH
Confidence 2346799999999999999999999886543211 001233445678899999999887777664 89999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
|++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+...+|++++|++|++++.|+++
T Consensus 144 rl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 222 (239)
T cd03296 144 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQE-EALEVADRVVVMNKGRIEQVGTPD 222 (239)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEecCHH
Confidence 999999999999999999999999999999999999999875 899999999986 577889999999999999999987
Q ss_pred hH
Q 010509 274 GA 275 (508)
Q Consensus 274 ~~ 275 (508)
+.
T Consensus 223 ~~ 224 (239)
T cd03296 223 EV 224 (239)
T ss_pred HH
Confidence 65
No 44
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=1.3e-47 Score=371.48 Aligned_cols=208 Identities=27% Similarity=0.462 Sum_probs=182.8
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++. +.+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 70 (216)
T TIGR00960 2 IRFEQVSKAYPG-----------GHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRL 70 (216)
T ss_pred eEEEEEEEEecC-----------CCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhc
Confidence 789999998741 02469999999999999999999999999999999999999999999999998742
Q ss_pred ------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 118 ------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
..++.++|++|++.+++.+||.||+.+....+ ....++..++++++++.+||.+..++.++ +||||
T Consensus 71 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 142 (216)
T TIGR00960 71 RGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRII---GVPPRDANERVSAALEKVGLEGKAHALPM-----QLSGG 142 (216)
T ss_pred ChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHH
Confidence 14568999999999999999999999875432 12334455678999999999887777664 89999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+..+||++++|++|++
T Consensus 143 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 143 EQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDIN-LVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999999877999999999986 57788999999999974
No 45
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=2.3e-47 Score=388.18 Aligned_cols=218 Identities=22% Similarity=0.396 Sum_probs=195.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~ 68 (301)
T TIGR03522 2 SIRVSSLTKLYG-------------TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ 68 (301)
T ss_pred EEEEEEEEEEEC-------------CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc
Confidence 478999999875 3579999999999999999999999999999999999999999999999998753
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
..++.+||++|++.+++.+||.||+.+.+.++ ..+.++..++++++++.+||.+..++.++ .|||||||
T Consensus 69 ~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~q 140 (301)
T TIGR03522 69 NPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIY---GMKGQLLKQRVEEMIELVGLRPEQHKKIG-----QLSKGYRQ 140 (301)
T ss_pred ChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCchh-----hCCHHHHH
Confidence 34678999999999999999999999876553 22344556678999999999998887775 89999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ ++.++|||+++|++|++++.|++++
T Consensus 141 rv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiii~sH~l~-~~~~~~d~i~~l~~G~i~~~g~~~~ 218 (301)
T TIGR03522 141 RVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK-DKTIILSTHIMQ-EVEAICDRVIIINKGKIVADKKLDE 218 (301)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999965 799999999986 5889999999999999999999998
Q ss_pred HHHH
Q 010509 275 AMNY 278 (508)
Q Consensus 275 ~~~~ 278 (508)
....
T Consensus 219 ~~~~ 222 (301)
T TIGR03522 219 LSAA 222 (301)
T ss_pred HHHh
Confidence 7653
No 46
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=2.3e-47 Score=374.41 Aligned_cols=218 Identities=25% Similarity=0.450 Sum_probs=189.1
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 67 (236)
T cd03219 1 LEVRGLTKRFG-------------GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGL 67 (236)
T ss_pred CeeeeeEEEEC-------------CEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCC
Confidence 46789988864 3569999999999999999999999999999999999999999999999998753
Q ss_pred ---h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCC-------CCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 118 ---Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNS-------FTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 118 ---~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
. .++.++|++|++.+++.+||+||+.+......... ....+..++++++++.+||.+..++.+ +
T Consensus 68 ~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 142 (236)
T cd03219 68 PPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPA-----G 142 (236)
T ss_pred CHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCCh-----h
Confidence 1 24569999999999999999999988754321110 023344567889999999988777665 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+++|++++|++|++
T Consensus 143 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~-~~~~~~d~i~~l~~G~i 221 (236)
T cd03219 143 ELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMD-VVMSLADRVTVLDQGRV 221 (236)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEeCCEE
Confidence 89999999999999999999999999999999999999999999999877999999999986 57788999999999999
Q ss_pred EEEcChhhH
Q 010509 267 LYSGEASGA 275 (508)
Q Consensus 267 v~~G~~~~~ 275 (508)
+..|++++.
T Consensus 222 ~~~~~~~~~ 230 (236)
T cd03219 222 IAEGTPDEV 230 (236)
T ss_pred EeecCHHHh
Confidence 999988765
No 47
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-47 Score=393.40 Aligned_cols=221 Identities=24% Similarity=0.377 Sum_probs=194.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++++.. ..++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 1 mi~i~~l~~~y~~~---------~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~ 71 (343)
T PRK11153 1 MIELKNISKVFPQG---------GRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTA 71 (343)
T ss_pred CEEEEeEEEEeCCC---------CCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCc
Confidence 37899999987511 013579999999999999999999999999999999999999999999999998752
Q ss_pred -------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 118 -------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 -------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
..++.+|||+|++.+++.+||+||+.+....+ ..++++.+++++++++.+||.+..++.+ ++|||
T Consensus 72 ~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSg 143 (343)
T PRK11153 72 LSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELA---GTPKAEIKARVTELLELVGLSDKADRYP-----AQLSG 143 (343)
T ss_pred CCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCCH
Confidence 13568999999999999999999999876443 2344555678899999999998877765 48999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++||+++ .+.++||++++|++|++++.
T Consensus 144 Gq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~-~i~~~~d~v~~l~~G~i~~~ 222 (343)
T PRK11153 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMD-VVKRICDRVAVIDAGRLVEQ 222 (343)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999764 899999999986 57789999999999999999
Q ss_pred cChhhHH
Q 010509 270 GEASGAM 276 (508)
Q Consensus 270 G~~~~~~ 276 (508)
|+++++.
T Consensus 223 g~~~~~~ 229 (343)
T PRK11153 223 GTVSEVF 229 (343)
T ss_pred cCHHHHH
Confidence 9988764
No 48
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-48 Score=362.71 Aligned_cols=232 Identities=25% Similarity=0.404 Sum_probs=200.6
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEE
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITY 110 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~ 110 (508)
...++++||++.|+ ++++|+|||+.|++++++|++||||||||||||++..+.. ..+|+|.+
T Consensus 5 ~~~~~~~~l~~yYg-------------~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~ 71 (253)
T COG1117 5 IPAIEVRDLNLYYG-------------DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLL 71 (253)
T ss_pred cceeEecceeEEEC-------------chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEE
Confidence 34689999999976 5789999999999999999999999999999999998763 35799999
Q ss_pred CCEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCC
Q 010509 111 NGKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGP 183 (508)
Q Consensus 111 ~G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~ 183 (508)
+|+++.. ++|+++|+|+|.+..|| +|++||+.++.++.. ..+++.+++|++.|+...|- +..|++- .
T Consensus 72 ~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g---~~~~~ldeiVe~sLk~AaLWdEVKDrL~--~ 145 (253)
T COG1117 72 DGKNIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHG---IKDKELDEIVESSLKKAALWDEVKDRLH--K 145 (253)
T ss_pred CCeeccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhc---cchHHHHHHHHHHHHHhHhHHHhHHHhh--C
Confidence 9999843 57899999999999999 899999999987652 22367778899999999884 4455542 3
Q ss_pred CCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 184 LTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
...+||||||||++|||||+.+|+|||||||||+|||.+..+|-+++.+|+ +.-|||++||.+. .+.+..|+..++..
T Consensus 146 sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk-~~yTIviVTHnmq-QAaRvSD~taFf~~ 223 (253)
T COG1117 146 SALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELK-KKYTIVIVTHNMQ-QAARVSDYTAFFYL 223 (253)
T ss_pred CccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHH-hccEEEEEeCCHH-HHHHHhHhhhhhcc
Confidence 345899999999999999999999999999999999999999999999998 4689999999997 57799999999999
Q ss_pred CeEEEEcChhhHHHHHHhcCCCCCCCCChHHHH
Q 010509 264 GYPLYSGEASGAMNYFASIGYCPSVPTNPSDFL 296 (508)
Q Consensus 264 G~iv~~G~~~~~~~~f~~~g~~~p~~~npad~~ 296 (508)
|+++++|+++++. .-|.++-+.||+
T Consensus 224 G~LvE~g~T~~iF--------~~P~~~~TedYi 248 (253)
T COG1117 224 GELVEFGPTDKIF--------TNPKHKRTEDYI 248 (253)
T ss_pred cEEEEEcCHHhhh--------cCccHHHHHHHh
Confidence 9999999998763 346666667775
No 49
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-47 Score=368.00 Aligned_cols=210 Identities=29% Similarity=0.523 Sum_probs=185.9
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~ 118 (508)
++++|+++.++ ++.+++|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++...
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 67 (210)
T cd03269 1 LEVENVTKRFG-------------RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIA 67 (210)
T ss_pred CEEEEEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHH
Confidence 46789998864 35699999999999999999999999999999999999999999999999987655
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHH
Q 010509 119 MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSI 198 (508)
Q Consensus 119 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 198 (508)
.++.++|++|++.+++.+|++||+.+....+ ..+..+..++++++++.+|+.+..++.+ ++||||||||++|
T Consensus 68 ~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl~l 139 (210)
T cd03269 68 ARNRIGYLPEERGLYPKMKVIDQLVYLAQLK---GLKKEEARRRIDEWLERLELSEYANKRV-----EELSKGNQQKVQF 139 (210)
T ss_pred HHccEEEeccCCcCCcCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCChHHHhCcH-----hhCCHHHHHHHHH
Confidence 5678999999999999999999998865443 1233445567889999999988777665 4899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 199 GQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 199 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
|++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+++|++++|++|++++.|
T Consensus 140 a~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 140 IAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQME-LVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999877899999999986 577889999999999998754
No 50
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=3.5e-47 Score=372.14 Aligned_cols=216 Identities=27% Similarity=0.478 Sum_probs=189.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++.+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~ 67 (232)
T cd03218 1 LRAENLSKRYG-------------KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKL 67 (232)
T ss_pred CeEEEEEEEeC-------------CEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccC
Confidence 46789998875 3569999999999999999999999999999999999999999999999998642
Q ss_pred ---h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 ---Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ---~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
. .++.++|++|++.+++.+|++||+.+....+ .....+..++++++++.+|+.+..++.+. .||||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 139 (232)
T cd03218 68 PMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIR---GLSKKEREEKLEELLEEFHITHLRKSKAS-----SLSGGER 139 (232)
T ss_pred CHhHHHhccEEEecCCccccccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHH
Confidence 1 2357999999999999999999998865332 12334455678899999999887777664 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+++|++++|++|+++..|+++
T Consensus 140 qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~ 218 (232)
T cd03218 140 RRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVR-ETLSITDRAYIIYEGKVLAEGTPE 218 (232)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEEeCHH
Confidence 9999999999999999999999999999999999999999877999999999986 577899999999999999999887
Q ss_pred hHH
Q 010509 274 GAM 276 (508)
Q Consensus 274 ~~~ 276 (508)
+..
T Consensus 219 ~~~ 221 (232)
T cd03218 219 EIA 221 (232)
T ss_pred Hhh
Confidence 653
No 51
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-47 Score=382.49 Aligned_cols=241 Identities=27% Similarity=0.364 Sum_probs=202.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|+++.++... ...+.+|+|||+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1 mi~~~~v~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 72 (288)
T PRK13643 1 MIKFEKVNYTYQPNS--------PFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSS 72 (288)
T ss_pred CEEEEEEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECcc
Confidence 378999999985210 012469999999999999999999999999999999999999999999999998741
Q ss_pred --------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 010509 118 --------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTR 186 (508)
Q Consensus 118 --------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 186 (508)
..++.+|||+|++ .+++ .||.|++.|+.... ..++++.++++.++++.+||. +..++.+ +
T Consensus 73 ~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~ 143 (288)
T PRK13643 73 TSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNF---GIPKEKAEKIAAEKLEMVGLADEFWEKSP-----F 143 (288)
T ss_pred ccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCChhhccCCc-----c
Confidence 3467899999986 5565 69999999875432 234566677889999999996 4556554 5
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+..+|||+++|++|++
T Consensus 144 ~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~-~~~~~~dri~~l~~G~i 222 (288)
T PRK13643 144 ELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMD-DVADYADYVYLLEKGHI 222 (288)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999877999999999986 57788999999999999
Q ss_pred EEEcChhhHH---HHHHhcCCCCCCCCChHHHH
Q 010509 267 LYSGEASGAM---NYFASIGYCPSVPTNPSDFL 296 (508)
Q Consensus 267 v~~G~~~~~~---~~f~~~g~~~p~~~npad~~ 296 (508)
++.|++++.. +.+...|+.+|.....++.+
T Consensus 223 ~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 223 ISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 9999998874 34556788777655555544
No 52
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.6e-47 Score=368.73 Aligned_cols=216 Identities=30% Similarity=0.499 Sum_probs=187.2
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~ 118 (508)
++++|++++++.. ...+.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~- 70 (220)
T cd03293 1 LEVRNVSKTYGGG---------GGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG- 70 (220)
T ss_pred CeEEEEEEEcCCC---------CcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-
Confidence 4678999887511 012579999999999999999999999999999999999999999999999998753
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHH
Q 010509 119 MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSI 198 (508)
Q Consensus 119 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 198 (508)
.++.++|++|++.+++.+|++||+.+....+ ..+.++..++++++++.+||.+..++.++ +||||||||++|
T Consensus 71 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrl~l 142 (220)
T cd03293 71 PGPDRGYVFQQDALLPWLTVLDNVALGLELQ---GVPKAEARERAEELLELVGLSGFENAYPH-----QLSGGMRQRVAL 142 (220)
T ss_pred ccCcEEEEecccccccCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCHHHHHHHHH
Confidence 4567999999999999999999998875432 12334455678899999999887777664 899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEe--CCeEEEEcChh
Q 010509 199 GQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLS--EGYPLYSGEAS 273 (508)
Q Consensus 199 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~--~G~iv~~G~~~ 273 (508)
|++|+.+|++++|||||+|||+.++..+.+.|+++.+ .|+|||++||+++ .+..++|++++|+ +|+++..++.+
T Consensus 143 a~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 143 ARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDID-EAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999999999965 5899999999986 5678899999999 79999888754
No 53
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.5e-48 Score=368.22 Aligned_cols=222 Identities=28% Similarity=0.486 Sum_probs=210.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|++++++++++ ++++++|+||+++||+|++++|||||||||.+|+|.|++.|++|+|.++|.+++.
T Consensus 2 ~L~ie~vtK~Fg-------------~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~ 68 (300)
T COG4152 2 ALEIEGVTKSFG-------------DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ 68 (300)
T ss_pred ceEEecchhccC-------------ceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh
Confidence 578899988865 6889999999999999999999999999999999999999999999999999988
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVS 197 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 197 (508)
..+.+|||+|++..|||.+||.|.+.|.|.++ ++++++.++.++.+|+.+++.....++|. +||.|++|++.
T Consensus 69 ~~~~rIGyLPEERGLy~k~tv~dql~yla~Lk---Gm~~~e~~~~~~~wLer~~i~~~~~~kIk-----~LSKGnqQKIQ 140 (300)
T COG4152 69 EIKNRIGYLPEERGLYPKMTVEDQLKYLAELK---GMPKAEIQKKLQAWLERLEIVGKKTKKIK-----ELSKGNQQKIQ 140 (300)
T ss_pred hhhhhcccChhhhccCccCcHHHHHHHHHHhc---CCcHHHHHHHHHHHHHhccccccccchHH-----HhhhhhhHHHH
Confidence 88889999999999999999999999999886 67888999999999999999998888774 99999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHH
Q 010509 198 IGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMN 277 (508)
Q Consensus 198 Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~ 277 (508)
+..+++++|++++||||+|||||.+.+.+.+.+.+++++|.|||+|+|.++ .+.++||++++|++|+.|.+|+.+++..
T Consensus 141 fisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me-~vEeLCD~llmL~kG~~V~~G~v~~ir~ 219 (300)
T COG4152 141 FISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME-HVEELCDRLLMLKKGQTVLYGTVEDIRR 219 (300)
T ss_pred HHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHH-HHHHHhhhhheecCCceEEeccHHHHHH
Confidence 999999999999999999999999999999999999999999999999997 6899999999999999999999999988
Q ss_pred HHHh
Q 010509 278 YFAS 281 (508)
Q Consensus 278 ~f~~ 281 (508)
-|..
T Consensus 220 ~~Gk 223 (300)
T COG4152 220 SFGK 223 (300)
T ss_pred hcCC
Confidence 6654
No 54
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.2e-49 Score=363.90 Aligned_cols=220 Identities=25% Similarity=0.445 Sum_probs=198.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|..+||.++|+ ++++++|||++|++||+++++|||||||||.+.++.|+.+|++|+|.++|.+++.
T Consensus 4 ~L~a~~l~K~y~-------------kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~ 70 (243)
T COG1137 4 TLVAENLAKSYK-------------KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITK 70 (243)
T ss_pred EEEehhhhHhhC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCccccc
Confidence 577888887765 6889999999999999999999999999999999999999999999999999875
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..|..+||+||++..|..|||+||+......+.. ...+.+++++++++|++|+|.|.++++-. +|||||
T Consensus 71 lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~-----sLSGGE 144 (243)
T COG1137 71 LPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAY-----SLSGGE 144 (243)
T ss_pred CChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCccc-----ccccch
Confidence 2355799999999999999999999987765531 22345666778999999999999998764 899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
|||+.|||||+.+|+.++||||++|.||.+..+|.++++.|++.|.-|++|-|+..+ ....|||.+++++|++..+|+|
T Consensus 145 RRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVRE-tL~i~dRaYIi~~G~vla~G~p 223 (243)
T COG1137 145 RRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRE-TLDICDRAYIISDGKVLAEGSP 223 (243)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHH-HHhhhheEEEEecCeEEecCCH
Confidence 999999999999999999999999999999999999999999999999999999984 6799999999999999999999
Q ss_pred hhHHH
Q 010509 273 SGAMN 277 (508)
Q Consensus 273 ~~~~~ 277 (508)
+++.+
T Consensus 224 ~ei~~ 228 (243)
T COG1137 224 EEIVN 228 (243)
T ss_pred HHHhc
Confidence 98753
No 55
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=4.2e-47 Score=366.88 Aligned_cols=210 Identities=27% Similarity=0.451 Sum_probs=185.1
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++++|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~ 67 (213)
T cd03301 1 VELENVTKRFG-------------NVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDL 67 (213)
T ss_pred CEEEeeEEEEC-------------CeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC
Confidence 46789998875 3569999999999999999999999999999999999999999999999998743
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++|++.+++.+|++||+.+....+ ....++.+++++++++.+|+.+..++.++ .||||||||+
T Consensus 68 ~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr~ 139 (213)
T cd03301 68 PPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLR---KVPKDEIDERVREVAELLQIEHLLDRKPK-----QLSGGQRQRV 139 (213)
T ss_pred CcccceEEEEecChhhccCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHHhCChh-----hCCHHHHHHH
Confidence 23457999999999999999999998865432 22344556678899999999887777664 8999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+++|++++|++|++++.|
T Consensus 140 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 140 ALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQV-EAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999864 899999999986 577889999999999999876
No 56
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=4e-47 Score=368.33 Aligned_cols=214 Identities=29% Similarity=0.471 Sum_probs=187.3
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++.. ....++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 72 (218)
T cd03266 2 ITADALTKRFRDV---------KKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE 72 (218)
T ss_pred eEEEEEEEecCCC---------CccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccC
Confidence 7889999987511 011269999999999999999999999999999999999999999999999998753
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|++.+++.+||+||+.+....+ ..+..+..++++++++.+||.+..++.++ .||||||||
T Consensus 73 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 144 (218)
T cd03266 73 PAEARRRLGFVSDSTGLYDRLTARENLEYFAGLY---GLKGDELTARLEELADRLGMEELLDRRVG-----GFSTGMRQK 144 (218)
T ss_pred HHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhhhhh-----hcCHHHHHH
Confidence 34678999999999999999999998765432 23344556788999999999988777664 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+..++|++++|++|++++.|
T Consensus 145 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 145 VAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQ-EVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999999999999877999999999986 577889999999999998754
No 57
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=4.1e-47 Score=368.76 Aligned_cols=216 Identities=29% Similarity=0.457 Sum_probs=188.9
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
|+++|+++.++. ..+++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~-----------~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 69 (220)
T cd03263 1 LQIRNLTKTYKK-----------GTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD 69 (220)
T ss_pred CEEEeeEEEeCC-----------CCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc
Confidence 467899988751 01579999999999999999999999999999999999999999999999998743
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|++.+++.+|++||+.+....+ ..+.++..++++++++.+||.+..++.++ +||||||||
T Consensus 70 ~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 141 (220)
T cd03263 70 RKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKEEVELLLRVLGLTDKANKRAR-----TLSGGMKRK 141 (220)
T ss_pred hHHHhhhEEEecCcCCccccCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHHhChhh-----hCCHHHHHH
Confidence 34567999999999999999999998865433 12334445678899999999887777664 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+++|++++|++|++++.|+++++
T Consensus 142 v~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 142 LSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK-GRSIILTTHSMD-EAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecCCHHHc
Confidence 9999999999999999999999999999999999999976 599999999987 57788999999999999999987754
No 58
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.8e-47 Score=371.60 Aligned_cols=219 Identities=24% Similarity=0.379 Sum_probs=190.5
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++.++.. .+.+++|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 i~~~~l~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 72 (233)
T cd03258 2 IELKNVSKVFGDT---------GGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLL 72 (233)
T ss_pred eEEecceEEccCC---------CCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccC
Confidence 7889999987510 001379999999999999999999999999999999999999999999999998742
Q ss_pred ------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 118 ------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
..++.++|++|++.+++.+|++||+.+....+ .....+..+.++++++.+||.+..++.+ +.||||
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 144 (233)
T cd03258 73 SGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIA---GVPKAEIEERVLELLELVGLEDKADAYP-----AQLSGG 144 (233)
T ss_pred CHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhcCh-----hhCCHH
Confidence 13567999999999999999999998865432 1234445567889999999988777665 489999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+..++|++++|++|+++..|
T Consensus 145 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 223 (233)
T cd03258 145 QKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEME-VVKRICDRVAVMEKGEVVEEG 223 (233)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999999875 899999999986 577889999999999999999
Q ss_pred ChhhH
Q 010509 271 EASGA 275 (508)
Q Consensus 271 ~~~~~ 275 (508)
++++.
T Consensus 224 ~~~~~ 228 (233)
T cd03258 224 TVEEV 228 (233)
T ss_pred CHHHH
Confidence 87765
No 59
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=4.7e-47 Score=393.43 Aligned_cols=207 Identities=23% Similarity=0.377 Sum_probs=187.3
Q ss_pred cccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----hc----cccEEEEecCCCC
Q 010509 61 IEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QM----TRNTGFVTQEDVL 132 (508)
Q Consensus 61 ~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~~----~~~i~yv~Q~~~l 132 (508)
++.+.+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. .. ++.++||+|++.+
T Consensus 3 ~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 3 TGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred cCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 446789999999999999999999999999999999999999999999999999853 22 5689999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 010509 133 SPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLD 212 (508)
Q Consensus 133 ~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLD 212 (508)
+|.+||+||+.+..... ..++++..+++.++++.+||++..+++++ +|||||||||+|||||+.+|++||||
T Consensus 83 ~~~~TV~eNi~~~~~~~---~~~~~~~~~~~~~~l~~vgL~~~~~~~p~-----~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 83 FPHMTILQNTSLGPELL---GWPEQERKEKALELLKLVGLEEYEHRYPD-----ELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHhcCCchhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 99999999999876543 34566677889999999999888877664 89999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHH
Q 010509 213 EPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 213 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
|||++||+.++.++.+.|+++.++ |+|||++|||++ ++.+++||+++|++|+++..|+++++.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~-ea~~~~drI~vl~~G~iv~~g~~~ei~ 218 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLD-EAIRIGDRIVIMKAGEIVQVGTPDEIL 218 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 999999999999999999999764 899999999986 477899999999999999999988764
No 60
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-46 Score=380.35 Aligned_cols=234 Identities=24% Similarity=0.402 Sum_probs=196.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||++.++... ...+.+|+||||++++||++||+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 73 (287)
T PRK13637 2 SIKIENLTHIYMEGT--------PFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITD 73 (287)
T ss_pred EEEEEEEEEECCCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCC
Confidence 488999999875210 012469999999999999999999999999999999999999999999999998742
Q ss_pred ------hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC--cccccccCCCCCCcc
Q 010509 118 ------QMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS--ECKNSLIGGPLTRGV 188 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~L 188 (508)
..++.+|||+|++. .+...||+||+.+..... ..++++..++++++++.+||. +..|+.+ +.|
T Consensus 74 ~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-----~~L 145 (287)
T PRK13637 74 KKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL---GLSEEEIENRVKRAMNIVGLDYEDYKDKSP-----FEL 145 (287)
T ss_pred cCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHC---CCCHHHHHHHHHHHHHHcCCCchhhccCCc-----ccC
Confidence 34578999999863 233579999999865432 245666677899999999997 5566555 599
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||||++||+||+.+|++|+|||||+|||+.++.++++.|++++++ |+|||++|||++ .+..+|||+++|++|+++
T Consensus 146 SgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~drv~~l~~G~i~ 224 (287)
T PRK13637 146 SGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSME-DVAKLADRIIVMNKGKCE 224 (287)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999865 999999999986 567889999999999999
Q ss_pred EEcChhhHHH---HHHhcCCCCCC
Q 010509 268 YSGEASGAMN---YFASIGYCPSV 288 (508)
Q Consensus 268 ~~G~~~~~~~---~f~~~g~~~p~ 288 (508)
+.|++++..+ .....|+..|.
T Consensus 225 ~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 225 LQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EECCHHHHHhCHHHHHHcCCCCCh
Confidence 9999988743 23445655443
No 61
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-47 Score=372.20 Aligned_cols=220 Identities=26% Similarity=0.462 Sum_probs=187.3
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 68 (241)
T cd03256 1 IEVENLSKTYPN------------GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKL 68 (241)
T ss_pred CEEeeEEEecCC------------ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEecccc
Confidence 467899887641 1569999999999999999999999999999999999999999999999998742
Q ss_pred ------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcC-----CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 118 ------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQL-----PNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
..++.++|++|++.+++.+||+||+.+...... .......+..++++++++.+||.+..++.+ +
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 143 (241)
T cd03256 69 KGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRA-----D 143 (241)
T ss_pred CHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCc-----c
Confidence 235679999999999999999999987532110 001112234567888999999987777655 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+..++|++++|++|+
T Consensus 144 ~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~G~ 222 (241)
T cd03256 144 QLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVD-LAREYADRIVGLKDGR 222 (241)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999764 899999999987 5778999999999999
Q ss_pred EEEEcChhhHH
Q 010509 266 PLYSGEASGAM 276 (508)
Q Consensus 266 iv~~G~~~~~~ 276 (508)
+++.|++++..
T Consensus 223 i~~~~~~~~~~ 233 (241)
T cd03256 223 IVFDGPPAELT 233 (241)
T ss_pred EEeecCHHHhh
Confidence 99999987753
No 62
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=1.2e-46 Score=370.52 Aligned_cols=217 Identities=26% Similarity=0.479 Sum_probs=190.6
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 68 (240)
T PRK09493 2 IEFKNVSKHFG-------------PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDP 68 (240)
T ss_pred EEEEeEEEEEC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC
Confidence 78899999874 3569999999999999999999999999999999999999999999999998742
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++.+++.+||+||+.+..... ......+..++++++++.+||++..++.+ +.|||||
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~ 141 (240)
T PRK09493 69 KVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV--RGASKEEAEKQARELLAKVGLAERAHHYP-----SELSGGQ 141 (240)
T ss_pred ChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCChHHHhcCh-----hhcCHHH
Confidence 23567999999999999999999998764211 12234455667889999999988777665 4899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+..++|++++|++|++++.|++
T Consensus 142 ~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 220 (240)
T PRK09493 142 QQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIG-FAEKVASRLIFIDKGRIAEDGDP 220 (240)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeeCCH
Confidence 99999999999999999999999999999999999999999877999999999986 57788999999999999999998
Q ss_pred hhHH
Q 010509 273 SGAM 276 (508)
Q Consensus 273 ~~~~ 276 (508)
++..
T Consensus 221 ~~~~ 224 (240)
T PRK09493 221 QVLI 224 (240)
T ss_pred HHHh
Confidence 7653
No 63
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1.3e-46 Score=372.38 Aligned_cols=217 Identities=29% Similarity=0.484 Sum_probs=190.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 69 (250)
T PRK11264 3 AIEVKNLVKKFH-------------GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDT 69 (250)
T ss_pred cEEEeceEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccc
Confidence 589999999875 3569999999999999999999999999999999999999999999999988641
Q ss_pred ------------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 118 ------------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 118 ------------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
..++.++|++|++.+++.+|+.||+.+...... ....++..++++++++.+||.+..++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~----- 142 (250)
T PRK11264 70 ARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVK--GEPKEEATARARELLAKVGLAGKETSYP----- 142 (250)
T ss_pred cccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhCCh-----
Confidence 235679999999999999999999987543211 1234455567889999999988777655
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||+++ .+.+++|++++|++|+
T Consensus 143 ~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~-~~~~~~d~i~~l~~G~ 221 (250)
T PRK11264 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMS-FARDVADRAIFMDQGR 221 (250)
T ss_pred hhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCE
Confidence 489999999999999999999999999999999999999999999999877999999999986 5778899999999999
Q ss_pred EEEEcChhhH
Q 010509 266 PLYSGEASGA 275 (508)
Q Consensus 266 iv~~G~~~~~ 275 (508)
+++.|++++.
T Consensus 222 i~~~~~~~~~ 231 (250)
T PRK11264 222 IVEQGPAKAL 231 (250)
T ss_pred EEEeCCHHHH
Confidence 9999998765
No 64
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=7.2e-47 Score=396.63 Aligned_cols=219 Identities=25% Similarity=0.424 Sum_probs=193.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||+++++ ++++|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 3 ~L~~~nls~~y~-------------~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~ 69 (402)
T PRK09536 3 MIDVSDLSVEFG-------------DTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEA 69 (402)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCc
Confidence 589999999875 4679999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN-SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
+.++.+|||+|++.+++.+||+|++.++....... ....++.+++++++++.+|+.+..++.+. +|||||
T Consensus 70 ~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~-----~LSgGe 144 (402)
T PRK09536 70 LSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVT-----SLSGGE 144 (402)
T ss_pred CCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHH
Confidence 45678999999999999999999998864211100 00123445678999999999988887764 899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
|||++|||+|+++|++|+|||||+|||+.++.+++++|++++++|+|||+++|+++ .+.++|||+++|++|++++.|++
T Consensus 145 rQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~-~~~~~adrii~l~~G~iv~~G~~ 223 (402)
T PRK09536 145 RQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPP 223 (402)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999877999999999986 57789999999999999999999
Q ss_pred hhH
Q 010509 273 SGA 275 (508)
Q Consensus 273 ~~~ 275 (508)
+++
T Consensus 224 ~ev 226 (402)
T PRK09536 224 ADV 226 (402)
T ss_pred HHH
Confidence 875
No 65
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-46 Score=376.08 Aligned_cols=229 Identities=25% Similarity=0.384 Sum_probs=194.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 71 (274)
T PRK13647 4 IIEVEDLHFRYKD------------GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNA 71 (274)
T ss_pred eEEEEEEEEEeCC------------CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCC
Confidence 5899999998741 2469999999999999999999999999999999999999999999999998743
Q ss_pred ----hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 ----QMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++. .++..||.||+.+..... ..++.+.+++++++++.+||.+..++.+. .|||||
T Consensus 72 ~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSgG~ 143 (274)
T PRK13647 72 ENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM---GLDKDEVERRVEEALKAVRMWDFRDKPPY-----HLSYGQ 143 (274)
T ss_pred CCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCChh-----hCCHHH
Confidence 34567999999963 445689999998864321 23444556678999999999888777664 899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
|||++||+||+.+|++|+|||||+|||+.++.++++.|++++++|+|||++||+++ .+.++|||+++|++|++++.|++
T Consensus 144 ~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~g~~ 222 (274)
T PRK13647 144 KKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVD-LAAEWADQVIVLKEGRVLAEGDK 222 (274)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999877999999999986 56788999999999999999998
Q ss_pred hhHH--HHHHhcCCCCC
Q 010509 273 SGAM--NYFASIGYCPS 287 (508)
Q Consensus 273 ~~~~--~~f~~~g~~~p 287 (508)
++.. +.+...|..+|
T Consensus 223 ~~~~~~~~~~~~~~~~~ 239 (274)
T PRK13647 223 SLLTDEDIVEQAGLRLP 239 (274)
T ss_pred HHhcCHHHHHHcCCCCC
Confidence 7542 23444555543
No 66
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=6.9e-47 Score=369.02 Aligned_cols=215 Identities=25% Similarity=0.374 Sum_probs=185.3
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC-----CCcccEEEECCE
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL-----GRINGRITYNGK 113 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~-----~~~~G~I~~~G~ 113 (508)
|+++|++++++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+. +|++|+|.++|+
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 67 (227)
T cd03260 1 IELRDLNVYYG-------------DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGK 67 (227)
T ss_pred CEEEEEEEEcC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCE
Confidence 46789988864 357999999999999999999999999999999999999 899999999999
Q ss_pred eCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCc
Q 010509 114 PFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRG 187 (508)
Q Consensus 114 ~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 187 (508)
++.. ..++.++|++|++.++ .+||+||+.+....+. .....+..++++++++.+||.+..++.+. +++
T Consensus 68 ~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---~~~ 141 (227)
T cd03260 68 DIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALWDEVKDRLH---ALG 141 (227)
T ss_pred EhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCChHHhccCC---ccc
Confidence 8642 2456799999999888 7999999988654321 11222345678899999999877665530 358
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||+++ .+.++||++++|++|+++
T Consensus 142 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~~~~~d~i~~l~~G~i~ 219 (227)
T cd03260 142 LSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE-YTIVIVTHNMQ-QAARVADRTAFLLNGRLV 219 (227)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhC-cEEEEEeccHH-HHHHhCCEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999999999877 99999999986 577889999999999999
Q ss_pred EEcChhh
Q 010509 268 YSGEASG 274 (508)
Q Consensus 268 ~~G~~~~ 274 (508)
+.|++++
T Consensus 220 ~~g~~~~ 226 (227)
T cd03260 220 EFGPTEQ 226 (227)
T ss_pred EecCccc
Confidence 9998765
No 67
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-47 Score=366.21 Aligned_cols=222 Identities=25% Similarity=0.434 Sum_probs=200.1
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..+++++|+++++ ..++++|||+++++||+++|+||||||||||+|+|+|.++|++|+|.++|++++
T Consensus 3 ~lL~v~~l~k~FG-------------Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it 69 (250)
T COG0411 3 PLLEVRGLSKRFG-------------GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDIT 69 (250)
T ss_pred ceeeeccceeecC-------------CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccC
Confidence 3588999998875 578999999999999999999999999999999999999999999999999986
Q ss_pred h-----hccccEEEEecCCCCCCCCCHHHHHHHHHHhc--------CCCC-CCHHHHHHHHHHHHHHcCCCcccccccCC
Q 010509 117 N-----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQ--------LPNS-FTEKEKIKCAEAVMTELGLSECKNSLIGG 182 (508)
Q Consensus 117 ~-----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~--------~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 182 (508)
. ..+..++--||...+|+.|||.||+..++..+ .+.. ..+++..+++.++|+.+||.+.+|+..|
T Consensus 70 ~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~- 148 (250)
T COG0411 70 GLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG- 148 (250)
T ss_pred CCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh-
Confidence 4 23567899999999999999999999876533 1111 2356677889999999999999999987
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEE
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
+||+|||||+.|||||+++|++|+||||.+||.+....++.+.++++++ .|.||+++.||+. .+..+||||++|
T Consensus 149 ----~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~-~Vm~l~dri~Vl 223 (250)
T COG0411 149 ----NLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMK-LVMGLADRIVVL 223 (250)
T ss_pred ----cCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccH-HHhhhccEEEec
Confidence 8999999999999999999999999999999999999999999999987 4799999999997 688999999999
Q ss_pred eCCeEEEEcChhhHHH
Q 010509 262 SEGYPLYSGEASGAMN 277 (508)
Q Consensus 262 ~~G~iv~~G~~~~~~~ 277 (508)
+.|+++.+|+|+++.+
T Consensus 224 ~~G~~IAeG~P~eV~~ 239 (250)
T COG0411 224 NYGEVIAEGTPEEVRN 239 (250)
T ss_pred cCCcCcccCCHHHHhc
Confidence 9999999999998753
No 68
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.8e-46 Score=379.70 Aligned_cols=234 Identities=24% Similarity=0.386 Sum_probs=196.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++... ...+++|+|||+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 73 (290)
T PRK13634 2 DITFQKVEHRYQYKT--------PFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITA 73 (290)
T ss_pred EEEEEEEEEEECCCC--------cccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECcc
Confidence 378999999985210 012469999999999999999999999999999999999999999999999998731
Q ss_pred --------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 010509 118 --------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTR 186 (508)
Q Consensus 118 --------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 186 (508)
..++.+|||+|++ .+++ .||+||+.|+.... ..+.++.+++++++++.+||. +..++.+ +
T Consensus 74 ~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~ 144 (290)
T PRK13634 74 GKKNKKLKPLRKKVGIVFQFPEHQLFE-ETVEKDICFGPMNF---GVSEEDAKQKAREMIELVGLPEELLARSP-----F 144 (290)
T ss_pred ccccchHHHHHhhEEEEeeCchhhhhh-hhHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCChhhhhCCc-----c
Confidence 3456799999986 4554 69999999875432 234555667889999999997 5566655 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++ |.|||++|||++ .+.++|||+++|++|+
T Consensus 145 ~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~-~~~~~~drv~~l~~G~ 223 (290)
T PRK13634 145 ELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSME-DAARYADQIVVMHKGT 223 (290)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999764 999999999986 5778999999999999
Q ss_pred EEEEcChhhHH---HHHHhcCCCCCCC
Q 010509 266 PLYSGEASGAM---NYFASIGYCPSVP 289 (508)
Q Consensus 266 iv~~G~~~~~~---~~f~~~g~~~p~~ 289 (508)
+++.|+++++. ..+...+..+|..
T Consensus 224 i~~~g~~~~~~~~~~~~~~~~~~~~~~ 250 (290)
T PRK13634 224 VFLQGTPREIFADPDELEAIGLDLPET 250 (290)
T ss_pred EEEECCHHHHhcCHHHHHHCCCCCCHH
Confidence 99999988764 2344556554443
No 69
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.4e-46 Score=370.62 Aligned_cols=215 Identities=24% Similarity=0.468 Sum_probs=188.7
Q ss_pred EEEEeEEEEEeccccccCccccccc-ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEE-KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~-~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
++++|++++++ + +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 67 (242)
T cd03295 1 IEFENVTKRYG-------------GGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIRE 67 (242)
T ss_pred CEEEEEEEEeC-------------CcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCc
Confidence 46789988865 2 569999999999999999999999999999999999999999999999998743
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc--ccccccCCCCCCccCHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE--CKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~vg~~~~~~LSGG 191 (508)
..++.++|++|++.+++.+|++||+.+....+ ..+.++..++++++++.+||.+ ..++.+ ++||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-----~~LS~G 139 (242)
T cd03295 68 QDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLL---KWPKEKIRERADELLALVGLDPAEFADRYP-----HELSGG 139 (242)
T ss_pred CChHHhhcceEEEccCccccCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcHHHHhcCh-----hhCCHH
Confidence 34567999999999999999999998865432 2234455667889999999985 566554 489999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+++|++++|++|++++.|
T Consensus 140 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 218 (242)
T cd03295 140 QQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDID-EAFRLADRIAIMKNGEIVQVG 218 (242)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999999864 899999999986 567899999999999999999
Q ss_pred ChhhH
Q 010509 271 EASGA 275 (508)
Q Consensus 271 ~~~~~ 275 (508)
++++.
T Consensus 219 ~~~~~ 223 (242)
T cd03295 219 TPDEI 223 (242)
T ss_pred CHHHH
Confidence 88765
No 70
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=2.2e-46 Score=375.20 Aligned_cols=217 Identities=20% Similarity=0.387 Sum_probs=190.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|+++.++ ++.+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++..
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 73 (269)
T PRK11831 7 LVDMRGVSFTRG-------------NRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPA 73 (269)
T ss_pred eEEEeCeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccc
Confidence 699999999874 3569999999999999999999999999999999999999999999999998742
Q ss_pred -------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 118 -------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 -------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
..++.++|++|++.+++.+||.||+.+...... ..+.++.+++++++++.+||.+..++.++ .|||
T Consensus 74 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSg 146 (269)
T PRK11831 74 MSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHT--QLPAPLLHSTVMMKLEAVGLRGAAKLMPS-----ELSG 146 (269)
T ss_pred cChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCH
Confidence 135679999999999999999999987643211 12344455678889999999988777664 8999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+++|++++|++|++++.
T Consensus 147 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~v~~l~~G~i~~~ 225 (269)
T PRK11831 147 GMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP-EVLSIADHAYIVADKKIVAH 225 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhhCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999765 899999999986 57788999999999999999
Q ss_pred cChhhH
Q 010509 270 GEASGA 275 (508)
Q Consensus 270 G~~~~~ 275 (508)
|++++.
T Consensus 226 g~~~~~ 231 (269)
T PRK11831 226 GSAQAL 231 (269)
T ss_pred CCHHHH
Confidence 998765
No 71
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=1e-46 Score=366.33 Aligned_cols=214 Identities=28% Similarity=0.482 Sum_probs=185.4
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
|+++|++++++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 67 (222)
T cd03224 1 LEVENLNAGYG-------------KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGL 67 (222)
T ss_pred CEEeeEEeecC-------------CeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCC
Confidence 46789988764 3569999999999999999999999999999999999999999999999998743
Q ss_pred ---h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCCcccccccCCCCCCccCHHH
Q 010509 118 ---Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL-GLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ---~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSGGe 192 (508)
. .++.++|++|++.+++.+|++||+.+...... ..+.+++++++++.+ ++.+..++.+ ++|||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~ 137 (222)
T cd03224 68 PPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLA-----GTLSGGE 137 (222)
T ss_pred CHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCch-----hhCCHHH
Confidence 1 24679999999999999999999988654321 123345667788888 5777666665 4899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
|||++||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+.+++|++++|++|+++..|++
T Consensus 138 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~ 216 (222)
T cd03224 138 QQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNAR-FALEIADRAYVLERGRVVLEGTA 216 (222)
T ss_pred HHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhccEEEEeeCCeEEEeCCH
Confidence 99999999999999999999999999999999999999999877899999999986 57789999999999999999987
Q ss_pred hhHH
Q 010509 273 SGAM 276 (508)
Q Consensus 273 ~~~~ 276 (508)
++..
T Consensus 217 ~~~~ 220 (222)
T cd03224 217 AELL 220 (222)
T ss_pred HHHh
Confidence 7653
No 72
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=1e-46 Score=365.45 Aligned_cols=209 Identities=31% Similarity=0.520 Sum_probs=180.0
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
|+++|++++++... +.+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~~---------~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~ 71 (218)
T cd03255 1 IELKNLSKTYGGGG---------EKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKL 71 (218)
T ss_pred CeEeeeEEEecCCC---------cceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhc
Confidence 46789998875110 01579999999999999999999999999999999999999999999999998742
Q ss_pred ---h----ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 118 ---Q----MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 ---~----~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
. .++.++|++|++.+++.+||+||+.+....+ .....+..++++++++.+||.+..++.+ +.|||
T Consensus 72 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 143 (218)
T cd03255 72 SEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLA---GVPKKERRERAEELLERVGLGDRLNHYP-----SELSG 143 (218)
T ss_pred chhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhc---CCCHHHHHHHHHHHHHHcCCchhhhcCh-----hhcCH
Confidence 1 2457999999999999999999999875433 1233444567889999999988777665 48999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++. +. .||++++|++|++
T Consensus 144 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~-~~-~~d~v~~l~~G~i 218 (218)
T cd03255 144 GQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL-AE-YADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHH-Hh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999999999987 58999999999874 55 8999999999974
No 73
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.3e-46 Score=362.23 Aligned_cols=206 Identities=30% Similarity=0.496 Sum_probs=182.2
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 67 (208)
T cd03268 1 LKTNDLTKTYG-------------KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN 67 (208)
T ss_pred CEEEEEEEEEC-------------CeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch
Confidence 46789998874 3579999999999999999999999999999999999999999999999998743
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++|++.+++.+||+||+.+....+ .. .+++++++++.+||.+..++.++ .|||||||||
T Consensus 68 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~----~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv 135 (208)
T cd03268 68 IEALRRIGALIEAPGFYPNLTARENLRLLARLL---GI----RKKRIDEVLDVVGLKDSAKKKVK-----GFSLGMKQRL 135 (208)
T ss_pred HHHHhhEEEecCCCccCccCcHHHHHHHHHHhc---CC----cHHHHHHHHHHcCCHHHHhhhHh-----hCCHHHHHHH
Confidence 34567999999999999999999998865432 11 13467889999999888777664 8999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+++|++++|++|++++.|
T Consensus 136 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 136 GIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLS-EIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999878899999999986 577889999999999998765
No 74
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-46 Score=375.50 Aligned_cols=230 Identities=21% Similarity=0.359 Sum_probs=196.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++.. ..+.+|+|+|++|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 73 (279)
T PRK13650 4 IIEVKNLTFKYKED----------QEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTE 73 (279)
T ss_pred eEEEEeEEEEcCCC----------CcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCc
Confidence 58999999987511 12459999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 ----QMTRNTGFVTQED-VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++ ..++..||+||+.+..... ..++++..++++++++.+||.+..++.+ ++|||||
T Consensus 74 ~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~LSgGq 145 (279)
T PRK13650 74 ENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENK---GIPHEEMKERVNEALELVGMQDFKEREP-----ARLSGGQ 145 (279)
T ss_pred CcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHH
Confidence 3456899999997 3677789999998865332 2355566678899999999998877765 4899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
|||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++. + ..+||+++|++|+++..|+
T Consensus 146 ~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~-~-~~~dri~~l~~G~i~~~g~ 223 (279)
T PRK13650 146 KQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDE-V-ALSDRVLVMKNGQVESTST 223 (279)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999875 9999999999874 5 4799999999999999999
Q ss_pred hhhHHH---HHHhcCCCCC
Q 010509 272 ASGAMN---YFASIGYCPS 287 (508)
Q Consensus 272 ~~~~~~---~f~~~g~~~p 287 (508)
+++..+ .+...|+..|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13650 224 PRELFSRGNDLLQLGLDIP 242 (279)
T ss_pred HHHHHcChHHHHHcCCCCc
Confidence 987653 2444555533
No 75
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=1.9e-46 Score=362.53 Aligned_cols=206 Identities=31% Similarity=0.520 Sum_probs=181.3
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~------------~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~ 69 (214)
T TIGR02673 2 IEFHNVSKAYP------------GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRL 69 (214)
T ss_pred EEEEeeeEEeC------------CCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccC
Confidence 78899999873 13569999999999999999999999999999999999999999999999998742
Q ss_pred ------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 118 ------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
..++.++|++|++.+++.+|+.||+.+....+ ....++.+++++++++.+||.+..++.+ +.||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (214)
T TIGR02673 70 RGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVR---GKKEREIQRRVGAALRQVGLEHKADAFP-----EQLSGG 141 (214)
T ss_pred CHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----hhCCHH
Confidence 24567999999999999999999999875432 1234445567889999999988777665 489999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+..+||++++|++|+
T Consensus 142 ~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~-~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 142 EQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLS-LVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999999999999877999999999986 5778899999999985
No 76
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=4.3e-46 Score=383.04 Aligned_cols=233 Identities=24% Similarity=0.415 Sum_probs=195.0
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
+.|+++||+++++.........+..+...+++||||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 7 ~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~ 86 (331)
T PRK15079 7 VLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLL 86 (331)
T ss_pred ceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECC
Confidence 46999999999863211000000011357999999999999999999999999999999999999999999999999874
Q ss_pred h-------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 010509 117 N-------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTR 186 (508)
Q Consensus 117 ~-------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 186 (508)
. ..++.++||+|++ .++|.+||.|++.+......+ ..++++.+++++++++.+||. +..++. ++
T Consensus 87 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~~~~~~-----p~ 160 (331)
T PRK15079 87 GMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPNLINRY-----PH 160 (331)
T ss_pred cCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChHHhcCC-----cc
Confidence 2 2456899999997 588999999999886543211 235666777889999999995 445554 45
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
+|||||||||+||+||+.+|++|++||||+|||+.++.++++.|+++.++ |.|+|++|||++ .+.+++||+++|++|+
T Consensus 161 ~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~-~~~~~~dri~vl~~G~ 239 (331)
T PRK15079 161 EFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLA-VVKHISDRVLVMYLGH 239 (331)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999864 999999999986 5778999999999999
Q ss_pred EEEEcChhhHH
Q 010509 266 PLYSGEASGAM 276 (508)
Q Consensus 266 iv~~G~~~~~~ 276 (508)
+++.|+++++.
T Consensus 240 ive~g~~~~i~ 250 (331)
T PRK15079 240 AVELGTYDEVY 250 (331)
T ss_pred EEEEcCHHHHH
Confidence 99999988764
No 77
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=4.9e-46 Score=365.37 Aligned_cols=216 Identities=28% Similarity=0.474 Sum_probs=188.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~ 68 (236)
T TIGR03864 2 LEVAGLSFAYG-------------ARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRA 68 (236)
T ss_pred EEEEeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccC
Confidence 67899998874 3569999999999999999999999999999999999999999999999998743
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|++.+++.+|++||+.+....+ ....++..++++++++.+||.+..++.++ .||||||||
T Consensus 69 ~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qr 140 (236)
T TIGR03864 69 PRAALARLGVVFQQPTLDLDLSVRQNLRYHAALH---GLSRAEARERIAALLARLGLAERADDKVR-----ELNGGHRRR 140 (236)
T ss_pred ChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHH
Confidence 23357999999999888999999998765432 22344455678899999999887777664 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||++||+++. +. .+|++++|++|+++..|++++
T Consensus 141 l~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~i~~l~~G~i~~~~~~~~ 218 (236)
T TIGR03864 141 VEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDE-IE-ADDRLVVLHRGRVLADGAAAE 218 (236)
T ss_pred HHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhh-Hh-hCCEEEEEeCCeEEEeCCHHH
Confidence 9999999999999999999999999999999999999985 58999999999974 54 499999999999999998876
Q ss_pred HHH
Q 010509 275 AMN 277 (508)
Q Consensus 275 ~~~ 277 (508)
..+
T Consensus 219 ~~~ 221 (236)
T TIGR03864 219 LRG 221 (236)
T ss_pred HHH
Confidence 643
No 78
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.6e-46 Score=369.99 Aligned_cols=219 Identities=26% Similarity=0.423 Sum_probs=186.8
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++. ++++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~------------~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 69 (243)
T TIGR02315 2 LEVENLSKVYPN------------GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKL 69 (243)
T ss_pred eEEEeeeeecCC------------CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhC
Confidence 678999887630 2569999999999999999999999999999999999999999999999998642
Q ss_pred ------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcC--C---CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 118 ------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQL--P---NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~--~---~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
..++.++|++|++.+++.+||+||+.+...... . ......+.+++++++++.+||.+..++.+ +
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~ 144 (243)
T TIGR02315 70 RGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRA-----D 144 (243)
T ss_pred CHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCc-----c
Confidence 235679999999999999999999976431100 0 00112334567889999999987777665 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.++||++++|++|+
T Consensus 145 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~-~~~~~~d~v~~l~~G~ 223 (243)
T TIGR02315 145 QLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVD-LAKKYADRIVGLKAGE 223 (243)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEECCE
Confidence 89999999999999999999999999999999999999999999999764 899999999986 5678899999999999
Q ss_pred EEEEcChhhH
Q 010509 266 PLYSGEASGA 275 (508)
Q Consensus 266 iv~~G~~~~~ 275 (508)
+++.|++++.
T Consensus 224 i~~~~~~~~~ 233 (243)
T TIGR02315 224 IVFDGAPSEL 233 (243)
T ss_pred EEecCCHHHh
Confidence 9999988764
No 79
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.9e-46 Score=375.65 Aligned_cols=207 Identities=23% Similarity=0.401 Sum_probs=182.6
Q ss_pred cccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----h----ccccEEEEecCCCC
Q 010509 61 IEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----Q----MTRNTGFVTQEDVL 132 (508)
Q Consensus 61 ~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~----~~~~i~yv~Q~~~l 132 (508)
++.+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. . .++.++|++|++.+
T Consensus 34 ~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 113 (269)
T cd03294 34 TGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFAL 113 (269)
T ss_pred cCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCccc
Confidence 346789999999999999999999999999999999999999999999999998742 1 13579999999999
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 010509 133 SPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLD 212 (508)
Q Consensus 133 ~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLD 212 (508)
++.+||+||+.+..... .....+..++++++++.+||.+..++.++ +||||||||++||+||+.+|++|+||
T Consensus 114 ~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq~qrv~lAral~~~p~illLD 185 (269)
T cd03294 114 LPHRTVLENVAFGLEVQ---GVPRAEREERAAEALELVGLEGWEHKYPD-----ELSGGMQQRVGLARALAVDPDILLMD 185 (269)
T ss_pred CCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCCcc-----cCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999998865432 12334455678899999999988887764 89999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHH
Q 010509 213 EPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 213 EPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
|||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+++|++++|++|++++.|++++..
T Consensus 186 EPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~-~~~~~~d~v~~l~~G~i~~~g~~~~~~ 249 (269)
T cd03294 186 EAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLD-EALRLGDRIAIMKDGRLVQVGTPEEIL 249 (269)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999764 899999999986 577899999999999999999987664
No 80
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.2e-46 Score=363.53 Aligned_cols=216 Identities=28% Similarity=0.434 Sum_probs=185.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++.. ...+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~~---------~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~ 75 (233)
T PRK11629 5 LLQCDNLCKRYQEG---------SVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSK 75 (233)
T ss_pred eEEEEeEEEEcCCC---------CcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCc
Confidence 58999999987521 012469999999999999999999999999999999999999999999999998743
Q ss_pred ----h---c-cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC
Q 010509 118 ----Q---M-TRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 118 ----~---~-~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 189 (508)
. . ++.++|++|++.+++.+|++||+.+..... ....++.+++++++++.+||.+..++.+ ++||
T Consensus 76 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS 147 (233)
T PRK11629 76 LSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIG---KKKPAEINSRALEMLAAVGLEHRANHRP-----SELS 147 (233)
T ss_pred CCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCh-----hhCC
Confidence 1 2 257999999999999999999998865432 1234455567899999999988777665 4899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++. +.. +|++++|++|+++.
T Consensus 148 gG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~-~~~-~~~~~~l~~G~i~~ 225 (233)
T PRK11629 148 GGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQL-AKR-MSRQLEMRDGRLTA 225 (233)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-HHh-hCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999975 58999999999874 545 58999999999998
Q ss_pred EcCh
Q 010509 269 SGEA 272 (508)
Q Consensus 269 ~G~~ 272 (508)
.|+.
T Consensus 226 ~~~~ 229 (233)
T PRK11629 226 ELSL 229 (233)
T ss_pred Eecc
Confidence 8764
No 81
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.4e-46 Score=379.02 Aligned_cols=234 Identities=22% Similarity=0.368 Sum_probs=196.0
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++|+++.|+... ...+++|+|+|+++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 20 ~~l~~~nl~~~y~~~~--------~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~ 91 (320)
T PRK13631 20 IILRVKNLYCVFDEKQ--------ENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIG 91 (320)
T ss_pred ceEEEEeEEEEeCCCC--------cccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcc
Confidence 4699999999985210 01246999999999999999999999999999999999999999999999998763
Q ss_pred h--------------------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-
Q 010509 117 N--------------------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS- 173 (508)
Q Consensus 117 ~--------------------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~- 173 (508)
. ..++.++||+|++ .+++ .||+||+.++.... ..+.++..++++++++.+||.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~ 167 (320)
T PRK13631 92 DKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVAL---GVKKSEAKKLAKFYLNKMGLDD 167 (320)
T ss_pred cccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCCh
Confidence 2 3467899999986 4666 49999998865321 234555667889999999996
Q ss_pred cccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHh
Q 010509 174 ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYY 253 (508)
Q Consensus 174 ~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~ 253 (508)
+..++.+ .+||||||||++|||+|+.+|++|||||||+|||+.++..+++.|++++++|+|||++||+++ .+..
T Consensus 168 ~~~~~~~-----~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~-~~~~ 241 (320)
T PRK13631 168 SYLERSP-----FGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTME-HVLE 241 (320)
T ss_pred hHhcCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHH
Confidence 5566554 589999999999999999999999999999999999999999999999877999999999986 4668
Q ss_pred hccEEEEEeCCeEEEEcChhhHH---HHHHhcCCCCCC
Q 010509 254 MFHKVLLLSEGYPLYSGEASGAM---NYFASIGYCPSV 288 (508)
Q Consensus 254 ~~D~v~lL~~G~iv~~G~~~~~~---~~f~~~g~~~p~ 288 (508)
.|||+++|++|+++..|++++.. +.+...|...|.
T Consensus 242 ~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 242 VADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred hCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 89999999999999999998764 234455655444
No 82
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.7e-46 Score=377.81 Aligned_cols=232 Identities=25% Similarity=0.397 Sum_probs=194.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC-
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS- 116 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~- 116 (508)
.|+++|+++.++... .....+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|++..
T Consensus 2 ~i~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~ 73 (305)
T PRK13651 2 QIKVKNIVKIFNKKL--------PTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKN 73 (305)
T ss_pred EEEEEEEEEEECCCC--------CccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccc
Confidence 488999999985210 01246999999999999999999999999999999999999999999999987541
Q ss_pred ---------------------------hhccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Q 010509 117 ---------------------------NQMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVM 167 (508)
Q Consensus 117 ---------------------------~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l 167 (508)
...++.+|||+|++ .++ ..||+|++.|+.... ..++++..+++++++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l 149 (305)
T PRK13651 74 KKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSM---GVSKEEAKKRAAKYI 149 (305)
T ss_pred ccccccccccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHc---CCCHHHHHHHHHHHH
Confidence 13456899999985 344 479999999875432 345566677899999
Q ss_pred HHcCCC-cccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecC
Q 010509 168 TELGLS-ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQ 246 (508)
Q Consensus 168 ~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~ 246 (508)
+.+||. +..++.+ ..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|+|||++|||
T Consensus 150 ~~~gL~~~~~~~~~-----~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd 224 (305)
T PRK13651 150 ELVGLDESYLQRSP-----FELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224 (305)
T ss_pred HHcCCChhhhhCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeC
Confidence 999996 6667655 4999999999999999999999999999999999999999999999998779999999999
Q ss_pred cchHHHhhccEEEEEeCCeEEEEcChhhHHH---HHHhcCCCCC
Q 010509 247 PSNMLYYMFHKVLLLSEGYPLYSGEASGAMN---YFASIGYCPS 287 (508)
Q Consensus 247 ~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~---~f~~~g~~~p 287 (508)
++ .+.+++||+++|++|++++.|++++... .....|...|
T Consensus 225 ~~-~~~~~adrv~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p 267 (305)
T PRK13651 225 LD-NVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNMEPP 267 (305)
T ss_pred HH-HHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCC
Confidence 86 5778999999999999999999988643 2334455444
No 83
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=3.4e-46 Score=360.61 Aligned_cols=207 Identities=31% Similarity=0.471 Sum_probs=181.3
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~ 68 (214)
T cd03292 1 IEFINVTKTYPN------------GTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDL 68 (214)
T ss_pred CEEEEEEEEeCC------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccC
Confidence 467899988741 2469999999999999999999999999999999999999999999999998742
Q ss_pred ------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 118 ------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
..++.++|++|++.+++.+|++||+.+....+ ..+.++..++++++++.+||.+..++.++ +||||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 140 (214)
T cd03292 69 RGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVT---GVPPREIRKRVPAALELVGLSHKHRALPA-----ELSGG 140 (214)
T ss_pred CHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCChh-----hcCHH
Confidence 24567999999999999999999998875432 12344455678899999999887776654 89999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+++|++++|++|++
T Consensus 141 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~-~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 141 EQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKE-LVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999999877999999999986 57778999999999974
No 84
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7e-46 Score=374.17 Aligned_cols=232 Identities=28% Similarity=0.460 Sum_probs=197.2
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+..|+++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++
T Consensus 3 ~~~l~~~~l~~~~~~------------~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~ 70 (283)
T PRK13636 3 DYILKVEELNYNYSD------------GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPI 70 (283)
T ss_pred CceEEEEeEEEEeCC------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEEC
Confidence 346999999998741 35699999999999999999999999999999999999999999999999987
Q ss_pred C------hhccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCcc
Q 010509 116 S------NQMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGV 188 (508)
Q Consensus 116 ~------~~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 188 (508)
. ...++.++|++|++. .+...||+||+.+..... ..+.++..++++++++.+||.+..++.+ +.|
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----~~L 142 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNL---KLPEDEVRKRVDNALKRTGIEHLKDKPT-----HCL 142 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhhhhCCc-----ccC
Confidence 3 134578999999973 234579999998864322 2345555677899999999998877765 489
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+..+|||+++|++|+++
T Consensus 143 S~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~-~~~~~~dri~~l~~G~i~ 221 (283)
T PRK13636 143 SFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDID-IVPLYCDNVFVMKEGRVI 221 (283)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999875 899999999987 466789999999999999
Q ss_pred EEcChhhHHH---HHHhcCCCCCC
Q 010509 268 YSGEASGAMN---YFASIGYCPSV 288 (508)
Q Consensus 268 ~~G~~~~~~~---~f~~~g~~~p~ 288 (508)
+.|++++... .+...+..+|.
T Consensus 222 ~~g~~~~~~~~~~~~~~~~~~~~~ 245 (283)
T PRK13636 222 LQGNPKEVFAEKEMLRKVNLRLPR 245 (283)
T ss_pred EeCCHHHHhcCHHHHHHcCCCCCc
Confidence 9999987654 33445655544
No 85
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=7.2e-46 Score=366.62 Aligned_cols=215 Identities=25% Similarity=0.427 Sum_probs=187.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc-----ccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI-----NGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~-----~G~I~~~G 112 (508)
+++++|++++++ ++.+++|+|+++++||+++|+||||||||||+++|+|+++|+ +|+|.++|
T Consensus 1 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g 67 (247)
T TIGR00972 1 AIEIENLNLFYG-------------EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDG 67 (247)
T ss_pred CEEEEEEEEEEC-------------CeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECC
Confidence 378899999875 346999999999999999999999999999999999999887 99999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS----ECKNSLIGG 182 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~ 182 (508)
+++.. ..++.++|++|++.+++ +|++||+.+....+. ..+.++..++++++++.+||. +..++.+
T Consensus 68 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~-- 142 (247)
T TIGR00972 68 QDIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSA-- 142 (247)
T ss_pred EEccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCc--
Confidence 98742 23568999999999988 999999988654321 123445556789999999997 5555554
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ +|||++||+++ .+.+++|++++|+
T Consensus 143 ---~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tiiivsH~~~-~~~~~~d~i~~l~ 217 (247)
T TIGR00972 143 ---LGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKK-YTIVIVTHNMQ-QAARISDRTAFFY 217 (247)
T ss_pred ---ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhc-CeEEEEecCHH-HHHHhCCEEEEEE
Confidence 589999999999999999999999999999999999999999999999774 89999999986 5778999999999
Q ss_pred CCeEEEEcChhhH
Q 010509 263 EGYPLYSGEASGA 275 (508)
Q Consensus 263 ~G~iv~~G~~~~~ 275 (508)
+|+++..|++++.
T Consensus 218 ~G~i~~~~~~~~~ 230 (247)
T TIGR00972 218 DGELVEYGPTEQI 230 (247)
T ss_pred CCEEEEeCCHHHH
Confidence 9999999998765
No 86
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-46 Score=366.66 Aligned_cols=218 Identities=25% Similarity=0.454 Sum_probs=191.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 69 (241)
T PRK10895 3 TLTAKNLAKAYK-------------GRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISL 69 (241)
T ss_pred eEEEeCcEEEeC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence 588999999874 3579999999999999999999999999999999999999999999999998742
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++.+++.+||.||+.+..... ...+.++.+++++++++.+|+.+..++.+ +.|||||
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 142 (241)
T PRK10895 70 LPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIR--DDLSAEQREDRANELMEEFHIEHLRDSMG-----QSLSGGE 142 (241)
T ss_pred CCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhcc--cccCHHHHHHHHHHHHHHcCCHHHhhcch-----hhCCHHH
Confidence 23567999999999999999999998764322 11233445567889999999987776655 4899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.+|++++|++|++++.|++
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~ 221 (241)
T PRK10895 143 RRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVR-ETLAVCERAYIVSQGHLIAHGTP 221 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHH-HHHHhcCEEEEEeCCeEEeeCCH
Confidence 99999999999999999999999999999999999999999877999999999986 57789999999999999999998
Q ss_pred hhHH
Q 010509 273 SGAM 276 (508)
Q Consensus 273 ~~~~ 276 (508)
++..
T Consensus 222 ~~~~ 225 (241)
T PRK10895 222 TEIL 225 (241)
T ss_pred HHHh
Confidence 7653
No 87
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=9e-46 Score=368.12 Aligned_cols=218 Identities=26% Similarity=0.422 Sum_probs=190.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~ 71 (257)
T PRK10619 5 KLNVIDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINL 71 (257)
T ss_pred cEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccc
Confidence 589999999875 3579999999999999999999999999999999999999999999999987631
Q ss_pred -----------------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-ccc
Q 010509 118 -----------------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK-NSL 179 (508)
Q Consensus 118 -----------------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~ 179 (508)
..++.++|++|++.+++.+|++||+.++..... .....+.++++.++++.+|+.+.. ++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 149 (257)
T PRK10619 72 VRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKQEARERAVKYLAKVGIDERAQGKY 149 (257)
T ss_pred ccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHcCCChhhhhCC
Confidence 235679999999999999999999987542111 123445567788999999998753 544
Q ss_pred cCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEE
Q 010509 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVL 259 (508)
Q Consensus 180 vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~ 259 (508)
+ ++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+..+|||++
T Consensus 150 ~-----~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~-~~~~~~d~i~ 223 (257)
T PRK10619 150 P-----VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHVI 223 (257)
T ss_pred c-----ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEE
Confidence 4 589999999999999999999999999999999999999999999999877999999999986 5778899999
Q ss_pred EEeCCeEEEEcChhhHH
Q 010509 260 LLSEGYPLYSGEASGAM 276 (508)
Q Consensus 260 lL~~G~iv~~G~~~~~~ 276 (508)
+|++|++++.|++++..
T Consensus 224 ~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 224 FLHQGKIEEEGAPEQLF 240 (257)
T ss_pred EEECCEEEEeCCHHHhh
Confidence 99999999999987653
No 88
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.7e-46 Score=359.96 Aligned_cols=208 Identities=30% Similarity=0.527 Sum_probs=182.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++.+|+|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1 i~~~~~~~~~~-------------~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 66 (211)
T cd03264 1 LQLENLTKRYG-------------KKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQ 66 (211)
T ss_pred CEEEEEEEEEC-------------CEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccc
Confidence 46789998864 346999999999999 999999999999999999999999999999999987643
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|++.+++.+||.||+.+....+ ..++++..++++++++.+||.+..++.++ +||||||||
T Consensus 67 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 138 (211)
T cd03264 67 PQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK---GIPSKEVKARVDEVLELVNLGDRAKKKIG-----SLSGGMRRR 138 (211)
T ss_pred hHHHHhheEEecCCCcccccCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHCCCHHHHhCchh-----hCCHHHHHH
Confidence 34678999999999999999999998865443 12334445678899999999887777664 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. .+.+++||+++|++|+++..|
T Consensus 139 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 139 VGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE-DRIVILSTHIVE-DVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEcCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999999986 599999999986 577889999999999998765
No 89
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-46 Score=365.02 Aligned_cols=216 Identities=30% Similarity=0.455 Sum_probs=188.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC-
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS- 116 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~- 116 (508)
+++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 68 (242)
T PRK11124 2 SIQLNGINCFYG-------------AHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDF 68 (242)
T ss_pred EEEEEeeEEEEC-------------CeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccc
Confidence 588999999875 356999999999999999999999999999999999999999999999999762
Q ss_pred ---------hhccccEEEEecCCCCCCCCCHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 117 ---------NQMTRNTGFVTQEDVLSPYLTVTETMVFTA-LLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 117 ---------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
...++.++|++|++.+++.+|+.||+.+.. ... ....++..++++++++.+|+.+..++.+ +
T Consensus 69 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~ 140 (242)
T PRK11124 69 SKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVL---GLSKDQALARAEKLLERLRLKPYADRFP-----L 140 (242)
T ss_pred ccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCCh-----h
Confidence 123567999999999999999999997532 221 1233444567889999999988777665 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|++||++. .+.+++|++++|++|++
T Consensus 141 ~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~i 219 (242)
T PRK11124 141 HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE-VARKTASRVVYMENGHI 219 (242)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEE
Confidence 89999999999999999999999999999999999999999999999877999999999986 56688999999999999
Q ss_pred EEEcChhhH
Q 010509 267 LYSGEASGA 275 (508)
Q Consensus 267 v~~G~~~~~ 275 (508)
++.|++++.
T Consensus 220 ~~~~~~~~~ 228 (242)
T PRK11124 220 VEQGDASCF 228 (242)
T ss_pred EEeCCHHHh
Confidence 999987753
No 90
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.4e-46 Score=365.17 Aligned_cols=215 Identities=25% Similarity=0.415 Sum_probs=187.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~ 71 (237)
T PRK11614 5 MLSFDKVSAHYG-------------KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITD 71 (237)
T ss_pred EEEEEeEEEeeC-------------CceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCC
Confidence 689999999874 3579999999999999999999999999999999999999999999999998743
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc-CCCcccccccCCCCCCccCHH
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL-GLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~vg~~~~~~LSGG 191 (508)
..++.++|++|++.+++.+||.||+.+..... ..++..++++++++.+ ++.+..++.+ +.||||
T Consensus 72 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G 141 (237)
T PRK11614 72 WQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRA-----GTMSGG 141 (237)
T ss_pred CCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCch-----hhCCHH
Confidence 23567999999999999999999998754221 1223344567788888 5776666554 489999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.+||+++|++|++++.|+
T Consensus 142 ~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 220 (237)
T PRK11614 142 EQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNAN-QALKLADRGYVLENGHVVLEDT 220 (237)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHhhCCEEEEEeCCEEEeeCC
Confidence 999999999999999999999999999999999999999999877999999999986 5778999999999999999999
Q ss_pred hhhHH
Q 010509 272 ASGAM 276 (508)
Q Consensus 272 ~~~~~ 276 (508)
++++.
T Consensus 221 ~~~~~ 225 (237)
T PRK11614 221 GDALL 225 (237)
T ss_pred HHHHh
Confidence 88764
No 91
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=1e-46 Score=344.73 Aligned_cols=214 Identities=28% Similarity=0.450 Sum_probs=188.2
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
+.+.+++++|+. .==..++.|++||++||+||||||||||||+|+|...|.+|+|++||++.+.
T Consensus 2 l~L~~V~~~y~~---------------~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~ 66 (231)
T COG3840 2 LALDDVRFSYGH---------------LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTAS 66 (231)
T ss_pred ccccceEEeeCc---------------ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcC
Confidence 556788887752 1236789999999999999999999999999999999999999999999754
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
-..|-+++++|+.++|..|||.+|+.++..-.+ .. ..+.+++++.++..+||..+.+++.+ +|||||||||
T Consensus 67 ~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL-~a~~r~~v~~aa~~vGl~~~~~RLP~-----~LSGGqRQRv 138 (231)
T COG3840 67 PPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KL-NAEQREKVEAAAAQVGLAGFLKRLPG-----ELSGGQRQRV 138 (231)
T ss_pred CcccCChhhhhhccccchhhhhhhhhcccCCccc--cc-CHHHHHHHHHHHHHhChhhHhhhCcc-----ccCchHHHHH
Confidence 356779999999999999999999988753221 22 24556789999999999999988876 9999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
++||+|+.+-+|++||||+|.|||.-+.+++.++.++++ ++.|++++||+|+ ++.+++|+++++++|||.+.|+.++.
T Consensus 139 ALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~-Da~~ia~~~~fl~~Gri~~~g~~~~~ 217 (231)
T COG3840 139 ALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPE-DAARIADRVVFLDNGRIAAQGSTQEL 217 (231)
T ss_pred HHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhhhceEEEeCCEEEeeccHHHH
Confidence 999999999999999999999999999999999999985 5999999999997 57799999999999999999988765
Q ss_pred H
Q 010509 276 M 276 (508)
Q Consensus 276 ~ 276 (508)
.
T Consensus 218 ~ 218 (231)
T COG3840 218 L 218 (231)
T ss_pred h
Confidence 3
No 92
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.2e-46 Score=356.14 Aligned_cols=217 Identities=28% Similarity=0.469 Sum_probs=191.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+..|. ..++|++||+++++||+++|+||||||||||||+|+|+.++.+|+|.++|++++.
T Consensus 3 mL~v~~l~~~YG-------------~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~ 69 (237)
T COG0410 3 MLEVENLSAGYG-------------KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITG 69 (237)
T ss_pred ceeEEeEeeccc-------------ceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCC
Confidence 689999998765 5789999999999999999999999999999999999999999999999999864
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CCcccccccCCCCCCccCHH
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELG-LSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSGG 191 (508)
..++.++||||...+||.|||+|||..++..+.. ++......+++.+.|- |.+.++++-| .||||
T Consensus 70 ~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG-----~LSGG 140 (237)
T COG0410 70 LPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAG-----TLSGG 140 (237)
T ss_pred CCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCccc-----CCChH
Confidence 3567899999999999999999999987654321 1122222778888885 7777888877 89999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
|||.++|||||+.+|++|+|||||.||-|.-..+|.+.+++++++ |.||+++.++.. .+.+++||.++|.+|+++++|
T Consensus 141 EQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~-~Al~iaDr~yvle~Griv~~G 219 (237)
T COG0410 141 EQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNAR-FALEIADRGYVLENGRIVLSG 219 (237)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHH-HHHHhhCEEEEEeCCEEEEec
Confidence 999999999999999999999999999999999999999999965 889999998875 677999999999999999999
Q ss_pred ChhhHHH
Q 010509 271 EASGAMN 277 (508)
Q Consensus 271 ~~~~~~~ 277 (508)
+++++.+
T Consensus 220 ~~~eL~~ 226 (237)
T COG0410 220 TAAELLA 226 (237)
T ss_pred CHHHHhc
Confidence 9987653
No 93
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-46 Score=374.32 Aligned_cols=222 Identities=23% Similarity=0.399 Sum_probs=190.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++... ...+.+|+|||++|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~ 73 (286)
T PRK13646 2 TIRFDNVSYTYQKGT--------PYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITH 73 (286)
T ss_pred EEEEEEEEEEECCCC--------ccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECcc
Confidence 488999999985210 012469999999999999999999999999999999999999999999999998732
Q ss_pred --------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 010509 118 --------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTR 186 (508)
Q Consensus 118 --------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 186 (508)
..++.+|||+|++ .+++ .||.||+.+..... ..+.++..++++++++.+||. +..++.+ +
T Consensus 74 ~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~ 144 (286)
T PRK13646 74 KTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNF---KMNLDEVKNYAHRLLMDLGFSRDVMSQSP-----F 144 (286)
T ss_pred ccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc-----c
Confidence 3467899999986 4665 59999999865332 234556667889999999996 5666654 5
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.+++||+++|++|+
T Consensus 145 ~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~-~~~~~~dri~~l~~G~ 223 (286)
T PRK13646 145 QMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMN-EVARYADEVIVMKEGS 223 (286)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 8999999999999999999999999999999999999999999999976 4999999999986 5778899999999999
Q ss_pred EEEEcChhhHHH
Q 010509 266 PLYSGEASGAMN 277 (508)
Q Consensus 266 iv~~G~~~~~~~ 277 (508)
+++.|++++..+
T Consensus 224 i~~~g~~~~~~~ 235 (286)
T PRK13646 224 IVSQTSPKELFK 235 (286)
T ss_pred EEEECCHHHHHh
Confidence 999999887653
No 94
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=7.9e-46 Score=360.51 Aligned_cols=208 Identities=26% Similarity=0.447 Sum_probs=182.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~------------~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~ 69 (222)
T PRK10908 2 IRFEHVSKAYL------------GGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRL 69 (222)
T ss_pred EEEEeeEEEec------------CCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccC
Confidence 78899999873 13579999999999999999999999999999999999999999999999998742
Q ss_pred ------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 118 ------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
..++.++|++|++.+++.+|++||+.+....+ ..+.++..++++++++.+|+.+..++.+ +.||||
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 141 (222)
T PRK10908 70 KNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIA---GASGDDIRRRVSAALDKVGLLDKAKNFP-----IQLSGG 141 (222)
T ss_pred ChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCCc-----hhCCHH
Confidence 13568999999999888999999998865432 2234445567889999999988777665 489999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|+|++||+++ .+...+|++++|++|+++
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 142 EQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIG-LISRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEc
Confidence 999999999999999999999999999999999999999999877899999999986 577889999999999975
No 95
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=8.5e-46 Score=361.37 Aligned_cols=218 Identities=42% Similarity=0.703 Sum_probs=186.8
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC---CcccEEEECCEeC
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG---RINGRITYNGKPF 115 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~---~~~G~I~~~G~~~ 115 (508)
+.++|+++.+...+ ..+++|+|+|+++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++
T Consensus 4 ~~~~~~~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~ 74 (226)
T cd03234 4 LPWWDVGLKAKNWN---------KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPR 74 (226)
T ss_pred ceeecceeeeecCc---------cccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEEC
Confidence 67899999875211 13679999999999999999999999999999999999998 8999999999987
Q ss_pred Ch-hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH-HHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 116 SN-QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEA-VMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 116 ~~-~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
.. ..++.++|++|++.+++.+||+||+.+......+.........+++++ .++.+++.+..++.+ +.||||||
T Consensus 75 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~ 149 (226)
T cd03234 75 KPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLV-----KGISGGER 149 (226)
T ss_pred ChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccc-----cCcCHHHH
Confidence 54 456789999999999999999999998765432222222233344555 899999988777665 48999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|+++|++...+.+++|++++|++|++++.|
T Consensus 150 qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 150 RRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999998779999999999855688999999999999998765
No 96
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.3e-46 Score=374.00 Aligned_cols=221 Identities=25% Similarity=0.368 Sum_probs=189.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++... ...+.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~~~~--------~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 73 (287)
T PRK13641 2 SIKFENVDYIYSPGT--------PMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITP 73 (287)
T ss_pred EEEEEEEEEEcCCCC--------CccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECcc
Confidence 578999999875110 002469999999999999999999999999999999999999999999999998632
Q ss_pred --------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 010509 118 --------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTR 186 (508)
Q Consensus 118 --------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 186 (508)
..++.++|++|++ .++ .+||.||+.+..... ....++..++++++++.+||. +..++.++
T Consensus 74 ~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~----- 144 (287)
T PRK13641 74 ETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNF---GFSEDEAKEKALKWLKKVGLSEDLISKSPF----- 144 (287)
T ss_pred ccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhhCCcc-----
Confidence 2356799999996 355 579999998765432 234555667889999999997 56776664
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+.||++++|++|++
T Consensus 145 ~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~-~~~~~~d~v~~l~~G~i 223 (287)
T PRK13641 145 ELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMD-DVAEYADDVLVLEHGKL 223 (287)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 89999999999999999999999999999999999999999999999877999999999986 57789999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|++++..
T Consensus 224 ~~~g~~~~~~ 233 (287)
T PRK13641 224 IKHASPKEIF 233 (287)
T ss_pred EEeCCHHHHh
Confidence 9999988764
No 97
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-45 Score=366.99 Aligned_cols=220 Identities=23% Similarity=0.399 Sum_probs=189.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~ 71 (255)
T PRK11300 5 LLSVSGLMMRFG-------------GLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEG 71 (255)
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCC
Confidence 699999999874 3579999999999999999999999999999999999999999999999998743
Q ss_pred ----h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcC-----------CC-CCCHHHHHHHHHHHHHHcCCCccccccc
Q 010509 118 ----Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQL-----------PN-SFTEKEKIKCAEAVMTELGLSECKNSLI 180 (508)
Q Consensus 118 ----~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~-----------~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~v 180 (508)
. .+..++|++|++.+++.+||+||+.+...... +. .....+..++++++++.+||.+..++.+
T Consensus 72 ~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 151 (255)
T PRK11300 72 LPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQA 151 (255)
T ss_pred CCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCCh
Confidence 1 23468999999999999999999998643110 00 0011233456788999999988777766
Q ss_pred CCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEE
Q 010509 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVL 259 (508)
Q Consensus 181 g~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~ 259 (508)
+ +||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.++||+++
T Consensus 152 ~-----~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~-~~~~~~d~i~ 225 (255)
T PRK11300 152 G-----NLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMK-LVMGISDRIY 225 (255)
T ss_pred h-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 4 89999999999999999999999999999999999999999999999875 899999999986 5778899999
Q ss_pred EEeCCeEEEEcChhhHH
Q 010509 260 LLSEGYPLYSGEASGAM 276 (508)
Q Consensus 260 lL~~G~iv~~G~~~~~~ 276 (508)
+|++|++++.|++++..
T Consensus 226 ~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 226 VVNQGTPLANGTPEEIR 242 (255)
T ss_pred EEECCeEEecCCHHHHh
Confidence 99999999999987653
No 98
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=3.3e-46 Score=358.84 Aligned_cols=201 Identities=30% Similarity=0.460 Sum_probs=174.6
Q ss_pred EEeEEEEEeccccccCccccccc-ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-h
Q 010509 41 FEDIVYKIKMKKGFYGSNKKIEE-KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-Q 118 (508)
Q Consensus 41 ~~~l~~~~~~~~~~~~~~~~~~~-~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-~ 118 (508)
++|++++++ + +.+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. .
T Consensus 2 ~~~l~~~~~-------------~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 68 (205)
T cd03226 2 IENISFSYK-------------KGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKE 68 (205)
T ss_pred cccEEEEeC-------------CcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHH
Confidence 578887764 2 569999999999999999999999999999999999999999999999998743 3
Q ss_pred ccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHH
Q 010509 119 MTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVS 197 (508)
Q Consensus 119 ~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 197 (508)
.++.++|++|++. .+..+|++||+.+..... . . ..++++++++.+||.+..++.++ +||||||||++
T Consensus 69 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~---~--~--~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~ 136 (205)
T cd03226 69 RRKSIGYVMQDVDYQLFTDSVREELLLGLKEL---D--A--GNEQAETVLKDLDLYALKERHPL-----SLSGGQKQRLA 136 (205)
T ss_pred hhcceEEEecChhhhhhhccHHHHHhhhhhhc---C--c--cHHHHHHHHHHcCCchhcCCCch-----hCCHHHHHHHH
Confidence 4567999999974 334579999998764321 1 1 12467899999999988777664 89999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 198 IGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 198 Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+++|++++|++|+++
T Consensus 137 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 137 IAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYE-FLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEC
Confidence 999999999999999999999999999999999999877999999999986 577889999999999875
No 99
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-45 Score=370.30 Aligned_cols=217 Identities=24% Similarity=0.460 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 1 ml~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 67 (271)
T PRK13638 1 MLATSDLWFRYQ-------------DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDY 67 (271)
T ss_pred CeEEEEEEEEcC-------------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEccc
Confidence 378999999874 3569999999999999999999999999999999999999999999999998731
Q ss_pred ------hccccEEEEecCCCC-CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 118 ------QMTRNTGFVTQEDVL-SPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~l-~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
..++.++|++|++.. +...|+.||+.+..... ....++..++++++++.+||.+..++.+ +.|||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSg 139 (271)
T PRK13638 68 SKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNL---GVPEAEITRRVDEALTLVDAQHFRHQPI-----QCLSH 139 (271)
T ss_pred ccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCHhHhcCCc-----hhCCH
Confidence 235679999999753 34468999998764332 2234455567889999999988777665 48999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
|||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++. .+..++|++++|++|++++.|
T Consensus 140 G~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~-~~~~~~d~i~~l~~G~i~~~g 218 (271)
T PRK13638 140 GQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDID-LIYEISDAVYVLRQGQILTHG 218 (271)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999999877999999999986 577889999999999999999
Q ss_pred ChhhHH
Q 010509 271 EASGAM 276 (508)
Q Consensus 271 ~~~~~~ 276 (508)
++++..
T Consensus 219 ~~~~~~ 224 (271)
T PRK13638 219 APGEVF 224 (271)
T ss_pred CHHHHh
Confidence 988764
No 100
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-45 Score=366.92 Aligned_cols=213 Identities=31% Similarity=0.532 Sum_probs=186.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|+++..
T Consensus 1 ml~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 67 (255)
T PRK11248 1 MLQISHLYADYG-------------GKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEG 67 (255)
T ss_pred CEEEEEEEEEeC-------------CeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence 378899998874 3569999999999999999999999999999999999999999999999998753
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVS 197 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 197 (508)
.++.++|++|++.+++.+||.||+.+....+ .....+..++++++++.+||.+..++.+ .+||||||||++
T Consensus 68 -~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qrl~ 138 (255)
T PRK11248 68 -PGAERGVVFQNEGLLPWRNVQDNVAFGLQLA---GVEKMQRLEIAHQMLKKVGLEGAEKRYI-----WQLSGGQRQRVG 138 (255)
T ss_pred -CCCcEEEEeCCCccCCCCcHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCChhHhhCCh-----hhCCHHHHHHHH
Confidence 3346899999999999999999998765432 2234455567899999999988777665 489999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEe--CCeEEEEcChh
Q 010509 198 IGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLS--EGYPLYSGEAS 273 (508)
Q Consensus 198 Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~--~G~iv~~G~~~ 273 (508)
||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||+++ .+..+||++++|+ +|+++..++.+
T Consensus 139 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 139 IARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIE-EAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 99999999999999999999999999999999999864 5899999999986 5778999999998 59999988754
No 101
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-45 Score=370.81 Aligned_cols=229 Identities=25% Similarity=0.369 Sum_probs=196.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~~-----------~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~ 73 (279)
T PRK13635 5 IIRVEHISFRYPD-----------AATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSE 73 (279)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCc
Confidence 5899999998741 12469999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 ----QMTRNTGFVTQED-VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++ .+++..||.||+.+..... ..+.++..++++++++.+||.+..++.++ .|||||
T Consensus 74 ~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~G~ 145 (279)
T PRK13635 74 ETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENI---GVPREEMVERVDQALRQVGMEDFLNREPH-----RLSGGQ 145 (279)
T ss_pred CcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhC---CCCHHHHHHHHHHHHHHcCChhhhhCCcc-----cCCHHH
Confidence 3456799999997 3667789999998865432 23455556788999999999988877764 899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
|||++||++|+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++||+++. +. .+|++++|++|++++.|+
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~-~~-~~d~i~~l~~G~i~~~g~ 223 (279)
T PRK13635 146 KQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE-AA-QADRVIVMNKGEILEEGT 223 (279)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH-HH-cCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999875 8999999999874 54 599999999999999999
Q ss_pred hhhHHH---HHHhcCCCCC
Q 010509 272 ASGAMN---YFASIGYCPS 287 (508)
Q Consensus 272 ~~~~~~---~f~~~g~~~p 287 (508)
+++... .+...+..+|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~ 242 (279)
T PRK13635 224 PEEIFKSGHMLQEIGLDVP 242 (279)
T ss_pred HHHHhcCHHHHHHcCCCCC
Confidence 887653 3444555543
No 102
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.3e-45 Score=363.40 Aligned_cols=218 Identities=24% Similarity=0.395 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++ ++++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|+++..
T Consensus 2 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~ 68 (242)
T TIGR03411 2 ILYLEGLSVSFD-------------GFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTG 68 (242)
T ss_pred eEEEEeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCC
Confidence 478999998874 3569999999999999999999999999999999999999999999999998742
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC--C---CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCc
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP--N---SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRG 187 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 187 (508)
..++.++|++|++.+++.+||+||+.+....... . ....++.+++++++++.+|+.+..++.++ .
T Consensus 69 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 143 (242)
T TIGR03411 69 LPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAG-----L 143 (242)
T ss_pred CCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChh-----h
Confidence 1245699999999999999999999886432100 0 01223445678999999999887776664 8
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.++||++++|++|+++
T Consensus 144 LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~~g~~~ 221 (242)
T TIGR03411 144 LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG-KHSVVVVEHDME-FVRSIADKVTVLHQGSVL 221 (242)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEECCHH-HHHHhCCEEEEEECCeEE
Confidence 999999999999999999999999999999999999999999999976 689999999986 577899999999999999
Q ss_pred EEcChhhH
Q 010509 268 YSGEASGA 275 (508)
Q Consensus 268 ~~G~~~~~ 275 (508)
..|++++.
T Consensus 222 ~~~~~~~~ 229 (242)
T TIGR03411 222 AEGSLDQV 229 (242)
T ss_pred eeCCHHHH
Confidence 99988765
No 103
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-45 Score=367.93 Aligned_cols=217 Identities=27% Similarity=0.490 Sum_probs=189.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~ 68 (258)
T PRK13548 2 MLEARNLSVRLG-------------GRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLAD 68 (258)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEccc
Confidence 488999999875 3569999999999999999999999999999999999999999999999998643
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
..++.++|++|++.+++.+||+||+.+..... ....++..++++++++.+||.+..++.++ +||||||
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGe~ 140 (258)
T PRK13548 69 WSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPH---GLSRAEDDALVAAALAQVDLAHLAGRDYP-----QLSGGEQ 140 (258)
T ss_pred CCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhccc---CCCcHHHHHHHHHHHHHcCCHhHhcCCcc-----cCCHHHH
Confidence 34567999999998888899999998864321 11223344568899999999887777664 8999999
Q ss_pred HHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 194 KRVSIGQEIL------INPSLLFLDEPTSGLDSTIAQQILSILLKLA-NGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 194 qRv~Ia~aL~------~~P~illLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
||++||++|+ .+|++|+|||||+|||+.++..+.+.|++++ ++|+|||++||++. .+..++|++++|++|++
T Consensus 141 qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i 219 (258)
T PRK13548 141 QRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLHQGRL 219 (258)
T ss_pred HHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhcCEEEEEECCEE
Confidence 9999999999 5999999999999999999999999999998 57899999999986 57789999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
++.|++++..
T Consensus 220 ~~~~~~~~~~ 229 (258)
T PRK13548 220 VADGTPAEVL 229 (258)
T ss_pred EeeCCHHHHh
Confidence 9999987654
No 104
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=1.1e-45 Score=360.21 Aligned_cols=215 Identities=29% Similarity=0.444 Sum_probs=179.4
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++.. ....++|+|+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 72 (228)
T cd03257 2 LEVKNLSVSFPTG---------GGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKL 72 (228)
T ss_pred eEEEeeeEeccCC---------CcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccc
Confidence 6889999987511 001369999999999999999999999999999999999999999999999998742
Q ss_pred ------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHH-HHHHHHHcCCC-cccccccCCCCCCc
Q 010509 118 ------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKC-AEAVMTELGLS-ECKNSLIGGPLTRG 187 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~vg~~~~~~ 187 (508)
..++.++|++|++ .+++.+||+||+.+......+ . ..++..+. ++++++.+++. +..++.+ ..
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~-~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~ 145 (228)
T cd03257 73 SRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGK-L-SKKEARKEAVLLLLVGVGLPEEVLNRYP-----HE 145 (228)
T ss_pred chhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccC-C-cHHHHHHHHHHHHHHHCCCChhHhhCCc-----hh
Confidence 2456899999998 567789999999876543211 1 12222222 36889999995 5566655 48
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+++|++++|++|++
T Consensus 146 LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i 224 (228)
T cd03257 146 LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLG-VVAKIADRVAVMYAGKI 224 (228)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCeEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999875 899999999986 57778999999999999
Q ss_pred EEEc
Q 010509 267 LYSG 270 (508)
Q Consensus 267 v~~G 270 (508)
+..|
T Consensus 225 ~~~g 228 (228)
T cd03257 225 VEEG 228 (228)
T ss_pred EecC
Confidence 8654
No 105
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=8.7e-46 Score=357.50 Aligned_cols=207 Identities=28% Similarity=0.499 Sum_probs=181.2
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 67 (213)
T cd03262 1 IEIKNLHKSFG-------------DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDD 67 (213)
T ss_pred CEEEEEEEEEC-------------CeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCcc
Confidence 46789998875 3569999999999999999999999999999999999999999999999998731
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++.+++.+|+.||+.+..... ...+.++..++++++++.+|+.+..++.+ ++|||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 140 (213)
T cd03262 68 KKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKV--KGMSKAEAEERALELLEKVGLADKADAYP-----AQLSGGQ 140 (213)
T ss_pred chhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHh--cCCCHHHHHHHHHHHHHHcCCHhHhhhCc-----cccCHHH
Confidence 34568999999999999999999998864311 12234455567889999999988777765 4899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+++|++++|++|++
T Consensus 141 ~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~-~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 141 QQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMG-FAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999999877899999999986 57789999999999974
No 106
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-45 Score=370.51 Aligned_cols=216 Identities=25% Similarity=0.385 Sum_probs=188.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++.++. ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~ 69 (274)
T PRK13644 2 IRLENVSYSYPD------------GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDF 69 (274)
T ss_pred EEEEEEEEEcCC------------CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCcc
Confidence 788999998741 2469999999999999999999999999999999999999999999999998742
Q ss_pred ----hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 ----QMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++. .+...|+.||+.+..... ..+..+..++++++++.+||.+..++.++ .|||||
T Consensus 70 ~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~ 141 (274)
T PRK13644 70 SKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL---CLPPIEIRKRVDRALAEIGLEKYRHRSPK-----TLSGGQ 141 (274)
T ss_pred ccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHHHhcCCcc-----cCCHHH
Confidence 34567999999975 356689999998865432 23455556778999999999988777654 899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
|||++||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||++.. + ..+|++++|++|++++.|++
T Consensus 142 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~-~-~~~d~v~~l~~G~i~~~g~~ 219 (274)
T PRK13644 142 GQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEE-L-HDADRIIVMDRGKIVLEGEP 219 (274)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-H-hhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999998779999999999874 5 46999999999999999998
Q ss_pred hhHH
Q 010509 273 SGAM 276 (508)
Q Consensus 273 ~~~~ 276 (508)
++..
T Consensus 220 ~~~~ 223 (274)
T PRK13644 220 ENVL 223 (274)
T ss_pred HHHh
Confidence 8764
No 107
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=1.6e-45 Score=365.13 Aligned_cols=216 Identities=26% Similarity=0.426 Sum_probs=188.4
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++||++.++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~ 67 (252)
T TIGR03005 1 VRFSDVTKRFG-------------ILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHM 67 (252)
T ss_pred CEEEEEEEEeC-------------CeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccc
Confidence 46889999875 3569999999999999999999999999999999999999999999999987631
Q ss_pred ----------------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC
Q 010509 118 ----------------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG 181 (508)
Q Consensus 118 ----------------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 181 (508)
..++.++|++|++.+++.+|+.||+.++.... ......+..+.++++++.+|+.+..++.+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~- 144 (252)
T TIGR03005 68 PGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--LGMARAEAEKRAMELLDMVGLADKADHMP- 144 (252)
T ss_pred ccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCChhHhhcCh-
Confidence 23568999999999999999999998754221 12234455567889999999988777655
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLL 260 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~l 260 (508)
++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. .+.+++||+++
T Consensus 145 ----~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~ 219 (252)
T TIGR03005 145 ----AQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMG-FAREFADRVCF 219 (252)
T ss_pred ----hhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEE
Confidence 489999999999999999999999999999999999999999999999875 899999999986 57788999999
Q ss_pred EeCCeEEEEcChhhH
Q 010509 261 LSEGYPLYSGEASGA 275 (508)
Q Consensus 261 L~~G~iv~~G~~~~~ 275 (508)
|++|++++.|+.++.
T Consensus 220 l~~G~i~~~g~~~~~ 234 (252)
T TIGR03005 220 FDKGRIVEQGKPDEI 234 (252)
T ss_pred EECCEEEEeCCHHHH
Confidence 999999999987765
No 108
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=1.6e-45 Score=362.71 Aligned_cols=227 Identities=29% Similarity=0.402 Sum_probs=187.9
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--CCcccEEEECCEeCC
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRINGRITYNGKPFS 116 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--~~~~G~I~~~G~~~~ 116 (508)
|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 67 (243)
T TIGR01978 1 LKIKDLHVSVE-------------DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLL 67 (243)
T ss_pred CeEeeEEEEEC-------------CEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecC
Confidence 46789998875 356999999999999999999999999999999999995 689999999999874
Q ss_pred h----h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC--C--CCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 010509 117 N----Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP--N--SFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTR 186 (508)
Q Consensus 117 ~----~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~--~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 186 (508)
. . .+..++|++|++.+++.+|++|++.+....... . ..+..+..++++++++.+||. +..++.++ .
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 143 (243)
T TIGR01978 68 ELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVN----E 143 (243)
T ss_pred CCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccc----c
Confidence 3 2 234589999999999999999999876432210 0 112334456788999999997 45565543 2
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhh-ccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYM-FHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~-~D~v~lL~~G~ 265 (508)
+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+... +|++++|++|+
T Consensus 144 ~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~-~~~~~~~d~i~~l~~G~ 222 (243)
T TIGR01978 144 GFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQR-LLNYIKPDYVHVLLDGR 222 (243)
T ss_pred CcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHH-HHHhhcCCeEEEEeCCE
Confidence 59999999999999999999999999999999999999999999999877899999999986 46666 79999999999
Q ss_pred EEEEcChhhHHHHHHhcCC
Q 010509 266 PLYSGEASGAMNYFASIGY 284 (508)
Q Consensus 266 iv~~G~~~~~~~~f~~~g~ 284 (508)
+++.|++++.. .+...+|
T Consensus 223 i~~~g~~~~~~-~~~~~~~ 240 (243)
T TIGR01978 223 IVKSGDVELAK-ELEEKGY 240 (243)
T ss_pred EEEecCHHHhc-cccccCc
Confidence 99999987543 3443333
No 109
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=8e-46 Score=357.42 Aligned_cols=205 Identities=30% Similarity=0.513 Sum_probs=176.3
Q ss_pred EEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh---
Q 010509 41 FEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--- 117 (508)
Q Consensus 41 ~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--- 117 (508)
++|+++.++. ..+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 ~~~l~~~~~~-----------~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~ 70 (211)
T cd03225 2 LKNLSFSYPD-----------GARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSL 70 (211)
T ss_pred ceeEEEecCC-----------CCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCH
Confidence 5788887641 01579999999999999999999999999999999999999999999999998742
Q ss_pred -hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 -QMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|++. .++.+|++||+.+..... .....+..++++++++.+||.+..++.+ +.||||||||
T Consensus 71 ~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LSgG~~qr 142 (211)
T cd03225 71 KELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENL---GLPEEEIEERVEEALELVGLEGLRDRSP-----FTLSGGQKQR 142 (211)
T ss_pred HHHHhhceEEecChhhhcCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCcHhhhcCCc-----ccCCHHHHHH
Confidence 34567999999975 366789999998865432 1233444567889999999987777665 4899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+..+||++++|++|+
T Consensus 143 v~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 143 VAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLD-LLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999999999877999999999986 5778899999999985
No 110
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-45 Score=376.64 Aligned_cols=230 Identities=25% Similarity=0.422 Sum_probs=194.5
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++||++.+......+. ..+...+|+|||++|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++.
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~---~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~ 80 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFK---PERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLL 80 (327)
T ss_pred ceEEEeeeEEEEcCCCCccc---cCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcC
Confidence 36999999999863211000 011357999999999999999999999999999999999999999999999999874
Q ss_pred h-------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCC
Q 010509 117 N-------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTR 186 (508)
Q Consensus 117 ~-------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~ 186 (508)
. ..++.++||+|++ .+.|.+|+.+++....... ....+++.++++.++++.+||.+ ..++. ++
T Consensus 81 ~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----p~ 153 (327)
T PRK11308 81 KADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--TSLSAAERREKALAMMAKVGLRPEHYDRY-----PH 153 (327)
T ss_pred cCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--cCCCHHHHHHHHHHHHHHCCCChHHhcCC-----Cc
Confidence 2 2456899999997 5899999999998765432 12345566778999999999963 45554 46
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
+|||||||||+||+||+.+|++|++||||++||..++.++++.|+++.++ |.|+|++|||++ .+.+++|++++|++|+
T Consensus 154 ~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~adrv~vm~~G~ 232 (327)
T PRK11308 154 MFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLS-VVEHIADEVMVMYLGR 232 (327)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999764 999999999986 5778999999999999
Q ss_pred EEEEcChhhHHH
Q 010509 266 PLYSGEASGAMN 277 (508)
Q Consensus 266 iv~~G~~~~~~~ 277 (508)
+++.|+++++.+
T Consensus 233 ive~g~~~~~~~ 244 (327)
T PRK11308 233 CVEKGTKEQIFN 244 (327)
T ss_pred EEEECCHHHHhc
Confidence 999999887753
No 111
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.3e-45 Score=368.58 Aligned_cols=221 Identities=24% Similarity=0.360 Sum_probs=187.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|++++++... ...+++|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~--------~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~ 73 (280)
T PRK13649 2 GINLQNVSYTYQAGT--------PFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITS 73 (280)
T ss_pred eEEEEEEEEEcCCCC--------ccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc
Confidence 488999999875210 001469999999999999999999999999999999999999999999999998642
Q ss_pred --------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 010509 118 --------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTR 186 (508)
Q Consensus 118 --------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 186 (508)
..++.++|++|++ .+++ .||+||+.+..... ..+.++..++++++++.+||. +..++.+ +
T Consensus 74 ~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 144 (280)
T PRK13649 74 TSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNF---GVSQEEAEALAREKLALVGISESLFEKNP-----F 144 (280)
T ss_pred cccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhhhhCCc-----c
Confidence 2456799999996 4555 69999998765332 123445556788999999997 4556555 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+..++|++++|++|++
T Consensus 145 ~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i 223 (280)
T PRK13649 145 ELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMD-DVANYADFVYVLEKGKL 223 (280)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhCCEEEEEECCEE
Confidence 89999999999999999999999999999999999999999999999877999999999986 57788999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|++++..
T Consensus 224 ~~~g~~~~~~ 233 (280)
T PRK13649 224 VLSGKPKDIF 233 (280)
T ss_pred EEeCCHHHHh
Confidence 9999988763
No 112
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-45 Score=366.39 Aligned_cols=219 Identities=23% Similarity=0.393 Sum_probs=189.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~ 68 (255)
T PRK11231 2 TLRTENLTVGYG-------------TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISM 68 (255)
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHH
Confidence 588999999875 3579999999999999999999999999999999999999999999999998642
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++.+++.+|+.||+.++...... ....+++..++++++++.+||.+..++.+ +.|||||
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 143 (255)
T PRK11231 69 LSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL-----TDLSGGQ 143 (255)
T ss_pred CCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCc-----ccCCHHH
Confidence 3456799999999988899999999875311000 01112234456889999999988777765 4899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+++|++++|++|+++..|++
T Consensus 144 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~ 222 (255)
T PRK11231 144 RQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLN-QASRYCDHLVVLANGHVMAQGTP 222 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHhcCEEEEEECCeEEEEcCH
Confidence 99999999999999999999999999999999999999999877999999999986 57789999999999999999988
Q ss_pred hhH
Q 010509 273 SGA 275 (508)
Q Consensus 273 ~~~ 275 (508)
++.
T Consensus 223 ~~~ 225 (255)
T PRK11231 223 EEV 225 (255)
T ss_pred HHh
Confidence 765
No 113
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-45 Score=364.51 Aligned_cols=215 Identities=23% Similarity=0.400 Sum_probs=185.4
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~~ 111 (508)
..++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++
T Consensus 11 ~~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~ 77 (258)
T PRK14268 11 PQIKVENLNLWYG-------------EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIE 77 (258)
T ss_pred eeEEEeeeEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEEC
Confidence 4699999999864 35699999999999999999999999999999999999864 79999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS----ECKNSLIG 181 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg 181 (508)
|+++.. ..++.++|++|++.+++ +|++||+.+..... ..+.++..++++++++.+|+. +..++.+
T Consensus 78 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 152 (258)
T PRK14268 78 GEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIH---GANKKDLDGVVENALRSAALWDETSDRLKSPA- 152 (258)
T ss_pred CEEcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCCcchhhhhcCCh-
Confidence 998632 24567999999998888 89999999865432 123444456788899999984 3344444
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
+.|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||++. .+.++||++++|
T Consensus 153 ----~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~~tiiivsH~~~-~~~~~~d~i~~l 226 (258)
T PRK14268 153 ----LSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK-DYTIVIVTHNMQ-QAARISDYTGFF 226 (258)
T ss_pred ----hhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHHhCCEEEEE
Confidence 58999999999999999999999999999999999999999999999965 799999999986 567889999999
Q ss_pred eCCeEEEEcChhhH
Q 010509 262 SEGYPLYSGEASGA 275 (508)
Q Consensus 262 ~~G~iv~~G~~~~~ 275 (508)
++|++++.|+++++
T Consensus 227 ~~G~i~~~~~~~~~ 240 (258)
T PRK14268 227 LMGELIEFGQTRQI 240 (258)
T ss_pred ECCEEEEeCCHHHH
Confidence 99999999998765
No 114
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.7e-45 Score=367.44 Aligned_cols=228 Identities=29% Similarity=0.460 Sum_probs=193.6
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++++.. .+.+++|+|+++++||+++|+||||||||||+++|+|+++|.+|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~ 69 (275)
T PRK13639 2 LETRDLKYSYPD------------GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYD 69 (275)
T ss_pred EEEEEEEEEeCC------------CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccc
Confidence 789999998741 2469999999999999999999999999999999999999999999999998731
Q ss_pred -----hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 118 -----QMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
..++.++|++|++. .+...||.||+.+..... ....++..+++.++++.+||.+..++.++ +||||
T Consensus 70 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS~G 141 (275)
T PRK13639 70 KKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNL---GLSKEEVEKRVKEALKAVGMEGFENKPPH-----HLSGG 141 (275)
T ss_pred cchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchhhcCChh-----hCCHH
Confidence 24568999999963 333479999998764321 23445556778899999999988887764 89999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
||||++||++|+.+|++++|||||+|||+.++..+++.|++++++|.|||++||++. .+.++||++++|++|+++..|+
T Consensus 142 q~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~-~~~~~~d~i~~l~~G~i~~~g~ 220 (275)
T PRK13639 142 QKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVD-LVPVYADKVYVMSDGKIIKEGT 220 (275)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999999877999999999986 5778899999999999999999
Q ss_pred hhhHHH---HHHhcCCCCC
Q 010509 272 ASGAMN---YFASIGYCPS 287 (508)
Q Consensus 272 ~~~~~~---~f~~~g~~~p 287 (508)
+++... .....|...|
T Consensus 221 ~~~~~~~~~~~~~~~~~~~ 239 (275)
T PRK13639 221 PKEVFSDIETIRKANLRLP 239 (275)
T ss_pred HHHHhcChHHHHhcCCCCC
Confidence 988743 3444555443
No 115
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=2.2e-45 Score=356.83 Aligned_cols=210 Identities=30% Similarity=0.501 Sum_probs=179.8
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++.. .+.+++|+|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++..
T Consensus 2 l~~~~v~~~~~~~---------~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~ 72 (221)
T TIGR02211 2 LKCENLGKRYQEG---------KLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKL 72 (221)
T ss_pred EEEEeeeEEccCC---------CcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhc
Confidence 6789999987521 012569999999999999999999999999999999999999999999999998742
Q ss_pred ---h---cc-ccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 118 ---Q---MT-RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 ---~---~~-~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
. .+ +.++|++|++.+++.+|++||+.+....+ .....+..+++.++++.+||.+..++.++ .|||
T Consensus 73 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~ 144 (221)
T TIGR02211 73 SSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIG---KKSVKEAKERAYEMLEKVGLEHRINHRPS-----ELSG 144 (221)
T ss_pred CHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCH
Confidence 1 22 57999999999999999999998865432 12333445678899999999887776654 8999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+. .+|++++|++|+++
T Consensus 145 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~-~~~-~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 145 GERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLE-LAK-KLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHh-hcCEEEEEeCCEec
Confidence 9999999999999999999999999999999999999999999764 899999999987 454 47999999999975
No 116
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-45 Score=368.01 Aligned_cols=219 Identities=26% Similarity=0.438 Sum_probs=190.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++. .+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~~------------~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 70 (277)
T PRK13652 3 LIETRDLCYSYSG------------SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITK 70 (277)
T ss_pred eEEEEEEEEEeCC------------CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc
Confidence 4889999998741 2459999999999999999999999999999999999999999999999998742
Q ss_pred ----hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 ----QMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++. .+...||.||+.+..... ..+.++..++++++++.+||.+..++.+. .|||||
T Consensus 71 ~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~Gq 142 (277)
T PRK13652 71 ENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINL---GLDEETVAHRVSSALHMLGLEELRDRVPH-----HLSGGE 142 (277)
T ss_pred CCHHHHHhheEEEecCcccccccccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHCCChhHhcCCcc-----cCCHHH
Confidence 34567999999973 233579999998765322 23455556678999999999988777664 899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
|||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.|||+++|++|++++.|+
T Consensus 143 ~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~-~~~~~~drv~~l~~G~i~~~g~ 221 (277)
T PRK13652 143 KKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLD-LVPEMADYIYVMDKGRIVAYGT 221 (277)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCeEEEECC
Confidence 99999999999999999999999999999999999999999875 899999999986 5778999999999999999999
Q ss_pred hhhHHH
Q 010509 272 ASGAMN 277 (508)
Q Consensus 272 ~~~~~~ 277 (508)
+++..+
T Consensus 222 ~~~~~~ 227 (277)
T PRK13652 222 VEEIFL 227 (277)
T ss_pred HHHHhc
Confidence 988753
No 117
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=4.4e-45 Score=375.55 Aligned_cols=226 Identities=26% Similarity=0.448 Sum_probs=193.1
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc---ccEEEECCE
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI---NGRITYNGK 113 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~---~G~I~~~G~ 113 (508)
..|+++||++.+.... +...+|+||||+|++||+++|+|+||||||||+++|+|+++|. +|+|.++|+
T Consensus 11 ~~L~i~~l~~~~~~~~---------~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~ 81 (330)
T PRK09473 11 ALLDVKDLRVTFSTPD---------GDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGR 81 (330)
T ss_pred ceEEEeCeEEEEecCC---------CCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCE
Confidence 4699999999885211 1356999999999999999999999999999999999999875 999999999
Q ss_pred eCCh----h---cc-ccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCC
Q 010509 114 PFSN----Q---MT-RNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGP 183 (508)
Q Consensus 114 ~~~~----~---~~-~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 183 (508)
++.. . .+ +.++||+|++ .+.|.+|+.+++........ ..+.++..+++.++++.+||.+..+. . +.
T Consensus 82 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~--~~~~~~~~~~~~~~L~~vgL~~~~~~-~-~~ 157 (330)
T PRK09473 82 EILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHK--GMSKAEAFEESVRMLDAVKMPEARKR-M-KM 157 (330)
T ss_pred ECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCCChHHH-h-cC
Confidence 8742 1 22 4799999998 68899999999987654321 23556667788999999999764322 2 25
Q ss_pred CCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEe
Q 010509 184 LTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
++++|||||||||+||+||+.+|++|++||||+|||+.++.++++.|++++++ |.|+|++|||++ .+.+++||+++|+
T Consensus 158 ~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~-~~~~~~Dri~vm~ 236 (330)
T PRK09473 158 YPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLG-VVAGICDKVLVMY 236 (330)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhCCEEEEEE
Confidence 66799999999999999999999999999999999999999999999999875 999999999986 5778899999999
Q ss_pred CCeEEEEcChhhHH
Q 010509 263 EGYPLYSGEASGAM 276 (508)
Q Consensus 263 ~G~iv~~G~~~~~~ 276 (508)
+|++++.|+++++.
T Consensus 237 ~G~ive~g~~~~i~ 250 (330)
T PRK09473 237 AGRTMEYGNARDVF 250 (330)
T ss_pred CCEEEEECCHHHHH
Confidence 99999999998875
No 118
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=7.2e-46 Score=358.43 Aligned_cols=209 Identities=31% Similarity=0.525 Sum_probs=176.0
Q ss_pred EEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhcc
Q 010509 41 FEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMT 120 (508)
Q Consensus 41 ~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~ 120 (508)
++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++. ..+
T Consensus 2 ~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-~~~ 67 (213)
T cd03235 2 VEDLTVSYG-------------GHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-KER 67 (213)
T ss_pred cccceeEEC-------------CEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-HHH
Confidence 567877764 356999999999999999999999999999999999999999999999998764 345
Q ss_pred ccEEEEecCCCCC--CCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHH
Q 010509 121 RNTGFVTQEDVLS--PYLTVTETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVS 197 (508)
Q Consensus 121 ~~i~yv~Q~~~l~--~~lTv~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 197 (508)
+.++|++|++.++ ..+||+||+.+....... .....++..++++++++.+|+.+..++.++ +||||||||++
T Consensus 68 ~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~ 142 (213)
T cd03235 68 KRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIG-----ELSGGQQQRVL 142 (213)
T ss_pred hheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcc-----cCCHHHHHHHH
Confidence 6799999998763 337999999875432110 001123345678899999999877776654 89999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 198 IGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 198 Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+++|++++|++| +++.|
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLG-LVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEcCc-EeecC
Confidence 999999999999999999999999999999999999878999999999986 577889999999886 56554
No 119
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.7e-45 Score=364.88 Aligned_cols=231 Identities=21% Similarity=0.331 Sum_probs=195.3
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+..++++|++++++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++
T Consensus 5 ~~~l~i~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~ 73 (269)
T PRK13648 5 NSIIVFKNVSFQYQS-----------DASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAI 73 (269)
T ss_pred CceEEEEEEEEEcCC-----------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 346999999998751 024589999999999999999999999999999999999999999999999987
Q ss_pred Ch----hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 116 SN----QMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 116 ~~----~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
.. ..++.++|++|++. +++..|+.+|+.+..... ....++..++++++++.+|+.+..++.+ ++|||
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~ 145 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENH---AVPYDEMHRRVSEALKQVDMLERADYEP-----NALSG 145 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhc---CCCHHHHHHHHHHHHHHcCCchhhhCCc-----ccCCH
Confidence 43 34668999999974 677789999998864322 2234455567889999999988777665 48999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
|||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++. +.. +||+++|++|++++.
T Consensus 146 G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~-~~~-~d~i~~l~~G~i~~~ 223 (269)
T PRK13648 146 GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSE-AME-ADHVIVMNKGTVYKE 223 (269)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchH-Hhc-CCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999764 8999999999874 554 999999999999999
Q ss_pred cChhhHHH---HHHhcCCCCC
Q 010509 270 GEASGAMN---YFASIGYCPS 287 (508)
Q Consensus 270 G~~~~~~~---~f~~~g~~~p 287 (508)
|++++..+ .+...|.++|
T Consensus 224 g~~~~~~~~~~~~~~~~~~~~ 244 (269)
T PRK13648 224 GTPTEIFDHAEELTRIGLDLP 244 (269)
T ss_pred cCHHHHhcCHHHHHhcCCCCC
Confidence 99887633 4445555544
No 120
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-45 Score=366.76 Aligned_cols=221 Identities=23% Similarity=0.381 Sum_probs=189.8
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 10 ~~l~i~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~ 76 (265)
T PRK10575 10 TTFALRNVSFRVP-------------GRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLE 76 (265)
T ss_pred ceEEEeeEEEEEC-------------CEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehh
Confidence 3699999999875 357999999999999999999999999999999999999999999999999864
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN-SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
. ..++.++|++|++.+++.+|+.||+.+........ ...+....++++++++.+||.+..++.++ +||||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 151 (265)
T PRK10575 77 SWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVD-----SLSGG 151 (265)
T ss_pred hCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcc-----cCCHH
Confidence 2 34567999999988889999999998753211000 01112334568899999999887777664 89999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ |.|||++||+++ .+.+.+|++++|++|+++..|
T Consensus 152 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~-~i~~~~d~i~~l~~G~i~~~~ 230 (265)
T PRK10575 152 ERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDIN-MAARYCDYLVALRGGEMIAQG 230 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEec
Confidence 999999999999999999999999999999999999999999765 899999999986 577899999999999999999
Q ss_pred ChhhHH
Q 010509 271 EASGAM 276 (508)
Q Consensus 271 ~~~~~~ 276 (508)
++++..
T Consensus 231 ~~~~~~ 236 (265)
T PRK10575 231 TPAELM 236 (265)
T ss_pred CHHHhc
Confidence 887653
No 121
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-45 Score=361.34 Aligned_cols=218 Identities=24% Similarity=0.378 Sum_probs=187.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~G 112 (508)
.++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14247 3 KIEIRDLKVSFG-------------QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDG 69 (250)
T ss_pred eEEEEeeEEEEC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECC
Confidence 588999999875 3569999999999999999999999999999999999986 4799999999
Q ss_pred EeCCh----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCCC
Q 010509 113 KPFSN----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLIGGPL 184 (508)
Q Consensus 113 ~~~~~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~~ 184 (508)
+++.. ..++.++|++|++.+++.+||.||+.+....+.. ..+.++..+.++++++.+||.+ ..++.
T Consensus 70 ~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----- 143 (250)
T PRK14247 70 QDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAP----- 143 (250)
T ss_pred EECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCC-----
Confidence 98742 3466899999999888999999999886543211 1133445567889999999964 33444
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
+.+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|++||+++ .+.+.+|++++|++|
T Consensus 144 ~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~~G 221 (250)
T PRK14247 144 AGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK-DMTIVLVTHFPQ-QAARISDYVAFLYKG 221 (250)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEEEECC
Confidence 458999999999999999999999999999999999999999999999965 799999999986 577889999999999
Q ss_pred eEEEEcChhhHH
Q 010509 265 YPLYSGEASGAM 276 (508)
Q Consensus 265 ~iv~~G~~~~~~ 276 (508)
+++..|++++..
T Consensus 222 ~i~~~g~~~~~~ 233 (250)
T PRK14247 222 QIVEWGPTREVF 233 (250)
T ss_pred eEEEECCHHHHH
Confidence 999999988763
No 122
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-45 Score=365.48 Aligned_cols=207 Identities=25% Similarity=0.418 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 12 ~l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~- 77 (257)
T PRK11247 12 PLLLNAVSKRYG-------------ERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA- 77 (257)
T ss_pred cEEEEEEEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-
Confidence 599999999875 356999999999999999999999999999999999999999999999998764
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVS 197 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 197 (508)
..++.++|++|++.+++.+||+||+.+... . ...++++++++.+||.+..++.+ ++||||||||++
T Consensus 78 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-----~----~~~~~~~~~l~~~gl~~~~~~~~-----~~LSgGqkqrl~ 143 (257)
T PRK11247 78 EAREDTRLMFQDARLLPWKKVIDNVGLGLK-----G----QWRDAALQALAAVGLADRANEWP-----AALSGGQKQRVA 143 (257)
T ss_pred HhhCceEEEecCccCCCCCcHHHHHHhccc-----c----hHHHHHHHHHHHcCChhHhcCCh-----hhCCHHHHHHHH
Confidence 346779999999999999999999987421 0 12356788999999988777665 489999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 198 IGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 198 Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++|||++ .+.+++|++++|++|++++.|+.+
T Consensus 144 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~-~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 144 LARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVS-EAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999999999999865 5899999999986 567889999999999999988754
No 123
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-45 Score=383.96 Aligned_cols=230 Identities=23% Similarity=0.349 Sum_probs=196.4
Q ss_pred eEEEEeEEEEEecccccc-----------CcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCccc
Q 010509 38 TLKFEDIVYKIKMKKGFY-----------GSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING 106 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~-----------~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G 106 (508)
.|+++||++.++...... ...+.++...+|+|+||++++||+++|+||||||||||||+|+|+++|++|
T Consensus 4 ~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 4 KLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 589999999876432100 001234455699999999999999999999999999999999999999999
Q ss_pred EEEECCEeCCh----h----ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 010509 107 RITYNGKPFSN----Q----MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNS 178 (508)
Q Consensus 107 ~I~~~G~~~~~----~----~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 178 (508)
+|.++|+++.. . .++.++||+|++.+++.+||+||+.+....+ ..+.++..++++++++.+||.+..++
T Consensus 84 ~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~---~~~~~~~~~~~~e~L~~~gL~~~~~~ 160 (400)
T PRK10070 84 QVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELA---GINAEERREKALDALRQVGLENYAHS 160 (400)
T ss_pred EEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCChhhhc
Confidence 99999998743 1 1357999999999999999999999876543 23445556788999999999988777
Q ss_pred ccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccE
Q 010509 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 179 ~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~ 257 (508)
.+ ++|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++++ .|+|||++||+++ ++.+++|+
T Consensus 161 ~~-----~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~-~~~~~~Dr 234 (400)
T PRK10070 161 YP-----DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLD-EAMRIGDR 234 (400)
T ss_pred Cc-----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHH-HHHHhCCE
Confidence 65 48999999999999999999999999999999999999999999999975 5899999999986 57789999
Q ss_pred EEEEeCCeEEEEcChhhHH
Q 010509 258 VLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 258 v~lL~~G~iv~~G~~~~~~ 276 (508)
+++|++|+++..|+++++.
T Consensus 235 i~vL~~G~i~~~g~~~~l~ 253 (400)
T PRK10070 235 IAIMQNGEVVQVGTPDEIL 253 (400)
T ss_pred EEEEECCEEEecCCHHHHH
Confidence 9999999999999987653
No 124
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-45 Score=361.94 Aligned_cols=221 Identities=22% Similarity=0.361 Sum_probs=185.2
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEE
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITY 110 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~ 110 (508)
|..|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||||+|+|+.+ |++|+|.+
T Consensus 4 ~~~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~ 70 (253)
T PRK14242 4 PPKMEARGLSFFYG-------------DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILL 70 (253)
T ss_pred CcEEEEeeeEEEEC-------------CeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEE
Confidence 34699999999875 3469999999999999999999999999999999999864 58999999
Q ss_pred CCEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 010509 111 NGKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPL 184 (508)
Q Consensus 111 ~G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 184 (508)
+|+++.. ..++.++|++|++.+++ .||+||+.+....+. ....++..++++++++.+|+.+...+.. +..
T Consensus 71 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~ 146 (253)
T PRK14242 71 DGENIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNG--VKDKAYLAERVERSLRHAALWDEVKDRL-HES 146 (253)
T ss_pred CCEEccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHcCCchhhhHHh-hCC
Confidence 9998742 23568999999998888 599999988754321 1123344567888999999864221111 133
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
++.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||+++ .+.+++|++++|++|
T Consensus 147 ~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~tH~~~-~~~~~~d~v~~l~~G 224 (253)
T PRK14242 147 ALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA-RYTIIIVTHNMQ-QAARVSDVTAFFYMG 224 (253)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCeEEEEEecHH-HHHHhCCEEEEEECC
Confidence 468999999999999999999999999999999999999999999999965 799999999986 577899999999999
Q ss_pred eEEEEcChhhH
Q 010509 265 YPLYSGEASGA 275 (508)
Q Consensus 265 ~iv~~G~~~~~ 275 (508)
+++..|++++.
T Consensus 225 ~i~~~g~~~~~ 235 (253)
T PRK14242 225 KLIEVGPTEQI 235 (253)
T ss_pred EEEEeCCHHHH
Confidence 99999988765
No 125
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-45 Score=361.93 Aligned_cols=217 Identities=22% Similarity=0.365 Sum_probs=185.2
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~~ 111 (508)
..++++|++++++ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++| ++|+|.++
T Consensus 6 ~~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 72 (254)
T PRK14273 6 AIIETENLNLFYT-------------DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYE 72 (254)
T ss_pred ceEEEeeeEEEeC-------------CceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEEC
Confidence 3699999999875 35699999999999999999999999999999999999875 58999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS----ECKNSLIG 181 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg 181 (508)
|+++.. ..++.++|++|++.+++ +||+||+.+...... .....+..++++++++.+++. +..++.+
T Consensus 73 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~- 148 (254)
T PRK14273 73 GKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHG--TKDKKKLDEIVEQSLKKSALWNEVKDKLNTNA- 148 (254)
T ss_pred CEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCchhhHHHHhCCc-
Confidence 998631 34668999999988885 899999988654321 112334456788899999883 3345444
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
++||||||||++|||+|+.+|++|+|||||+|||+.++..+++.|+++++ +.|||++||+++ .+.+++||+++|
T Consensus 149 ----~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tvii~sH~~~-~~~~~~d~i~~l 222 (254)
T PRK14273 149 ----LSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE-SYTIIIVTHNMQ-QAGRISDRTAFF 222 (254)
T ss_pred ----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEE
Confidence 58999999999999999999999999999999999999999999999964 799999999986 577889999999
Q ss_pred eCCeEEEEcChhhHH
Q 010509 262 SEGYPLYSGEASGAM 276 (508)
Q Consensus 262 ~~G~iv~~G~~~~~~ 276 (508)
++|+++..|+++++.
T Consensus 223 ~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 223 LNGCIEEESSTDELF 237 (254)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
No 126
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=3.5e-45 Score=356.17 Aligned_cols=210 Identities=25% Similarity=0.414 Sum_probs=185.1
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~ 118 (508)
|+++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...
T Consensus 1 l~l~~v~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~ 67 (223)
T TIGR03740 1 LETKNLSKRFG-------------KQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK 67 (223)
T ss_pred CEEEeEEEEEC-------------CEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc
Confidence 46789988764 35699999999999999999999999999999999999999999999999987543
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHH
Q 010509 119 MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSI 198 (508)
Q Consensus 119 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 198 (508)
.++.++|++|++.+++.+|++||+.+....+ ... .+++.++++.+||.+..++.++ .||||||||++|
T Consensus 68 ~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~rv~l 135 (223)
T TIGR03740 68 DLHKIGSLIESPPLYENLTARENLKVHTTLL---GLP----DSRIDEVLNIVDLTNTGKKKAK-----QFSLGMKQRLGI 135 (223)
T ss_pred ccccEEEEcCCCCccccCCHHHHHHHHHHHc---CCC----HHHHHHHHHHcCCcHHHhhhHh-----hCCHHHHHHHHH
Confidence 2357999999999999999999998765432 111 2357789999999988777654 899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 199 GQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 199 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|++++.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.+.+|++++|++|++++.|++.+
T Consensus 136 aral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 136 AIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILS-EVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999999999999877999999999986 5778999999999999999998753
No 127
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-45 Score=374.30 Aligned_cols=225 Identities=24% Similarity=0.385 Sum_probs=189.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC----CcccEEEECCE
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG----RINGRITYNGK 113 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~----~~~G~I~~~G~ 113 (508)
.|+++||++.++.. .+...+|+||||++++||+++|+|+||||||||+++|+|+++ +++|+|.++|+
T Consensus 3 ~L~v~~l~~~~~~~---------~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~ 73 (326)
T PRK11022 3 LLNVDKLSVHFGDE---------SAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQ 73 (326)
T ss_pred eEEEeCeEEEECCC---------CccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCE
Confidence 48999999998521 112569999999999999999999999999999999999986 48999999999
Q ss_pred eCCh----h----ccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCC
Q 010509 114 PFSN----Q----MTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGP 183 (508)
Q Consensus 114 ~~~~----~----~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 183 (508)
++.. . .++.++||+|++ .+.|.+|+.+++....... .....++.++++.++++.+||.+..+. -+.
T Consensus 74 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~--l~~ 149 (326)
T PRK11022 74 DLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVH--QGGNKKTRRQRAIDLLNQVGIPDPASR--LDV 149 (326)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHCCCCChHHH--HhC
Confidence 8742 1 124699999998 5889999999887654432 123455667889999999999753211 123
Q ss_pred CCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 184 LTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
++++|||||||||+||+||+.+|++|++||||+|||+.++.++++.|+++++ .|.|+|++|||++ .+.+++|||++|+
T Consensus 150 ~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~-~~~~~adri~vm~ 228 (326)
T PRK11022 150 YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLA-LVAEAAHKIIVMY 228 (326)
T ss_pred CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEE
Confidence 4569999999999999999999999999999999999999999999999986 5999999999987 5778999999999
Q ss_pred CCeEEEEcChhhHH
Q 010509 263 EGYPLYSGEASGAM 276 (508)
Q Consensus 263 ~G~iv~~G~~~~~~ 276 (508)
+|+++..|+++++.
T Consensus 229 ~G~ive~g~~~~~~ 242 (326)
T PRK11022 229 AGQVVETGKAHDIF 242 (326)
T ss_pred CCEEEEECCHHHHh
Confidence 99999999998875
No 128
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-45 Score=366.06 Aligned_cols=221 Identities=23% Similarity=0.384 Sum_probs=190.4
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
.+|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 6 ~~l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~ 72 (265)
T PRK10253 6 ARLRGEQLTLGYG-------------KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQ 72 (265)
T ss_pred cEEEEEEEEEEEC-------------CEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhh
Confidence 4799999999875 356999999999999999999999999999999999999999999999999874
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
. ..++.++|++|++.+++.+|++||+.+......+ .....+...++++++++.+||.+..++.+ +.||||
T Consensus 73 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G 147 (265)
T PRK10253 73 HYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV-----DTLSGG 147 (265)
T ss_pred hCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCc-----ccCChH
Confidence 2 3456799999999999999999999875311100 00011234457889999999988777665 489999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+++|++++|++|++++.|
T Consensus 148 q~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g 226 (265)
T PRK10253 148 QRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLN-QACRYASHLIALREGKIVAQG 226 (265)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999864 899999999986 578999999999999999999
Q ss_pred ChhhHH
Q 010509 271 EASGAM 276 (508)
Q Consensus 271 ~~~~~~ 276 (508)
++++..
T Consensus 227 ~~~~~~ 232 (265)
T PRK10253 227 APKEIV 232 (265)
T ss_pred CHHHHh
Confidence 988764
No 129
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.7e-45 Score=382.11 Aligned_cols=229 Identities=24% Similarity=0.375 Sum_probs=196.1
Q ss_pred EEEEeEEEEEeccccc------cCc-----ccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccE
Q 010509 39 LKFEDIVYKIKMKKGF------YGS-----NKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGR 107 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~------~~~-----~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~ 107 (508)
|+++||.+-++..... .+. .++++...+|+|+||++++||+++|+||||||||||+++|+|+++|++|+
T Consensus 1 ~~~~~~~k~fg~~~~~~~~~~~~g~~~~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~ 80 (382)
T TIGR03415 1 IDFKNVDVVFGDQPAEALALLDQGKTREEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGS 80 (382)
T ss_pred CEEEeeEEeeCCCHHHHHHHHHcCCCHHHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence 4678888877643211 011 14456788999999999999999999999999999999999999999999
Q ss_pred EEECCE----eCCh-------hc-cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 010509 108 ITYNGK----PFSN-------QM-TRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC 175 (508)
Q Consensus 108 I~~~G~----~~~~-------~~-~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~ 175 (508)
|.++|+ ++.. .. ++.++||+|++.++|.+||+||+.++...+ ..++++.+++++++++.+||.+.
T Consensus 81 I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~---g~~~~~~~~~a~e~le~vgL~~~ 157 (382)
T TIGR03415 81 VLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQ---GMPEAERRKRVDEQLELVGLAQW 157 (382)
T ss_pred EEECCEecccccccCCHHHHHHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchh
Confidence 999997 3321 12 257999999999999999999999876442 23456667788999999999988
Q ss_pred cccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhh
Q 010509 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYM 254 (508)
Q Consensus 176 ~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~ 254 (508)
.++.++ +|||||||||+|||+|+.+|+||||||||+|||+.++.++.+.|++++++ |+|||++|||++ ++.++
T Consensus 158 ~~~~~~-----~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~-e~~~l 231 (382)
T TIGR03415 158 ADKKPG-----ELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLD-EALKI 231 (382)
T ss_pred hcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHh
Confidence 887664 89999999999999999999999999999999999999999999999875 999999999987 57789
Q ss_pred ccEEEEEeCCeEEEEcChhhHH
Q 010509 255 FHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 255 ~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
+||+++|++|+++..|+++++.
T Consensus 232 ~DrI~vl~~G~iv~~g~~~ei~ 253 (382)
T TIGR03415 232 GNRIAIMEGGRIIQHGTPEEIV 253 (382)
T ss_pred CCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999998774
No 130
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.2e-45 Score=360.61 Aligned_cols=218 Identities=25% Similarity=0.401 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~~G 112 (508)
.|+++|++++++ ++++|+|+|+++++||+++|+||||||||||+++|+|+++| ++|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g 70 (253)
T PRK14267 4 AIETVNLRVYYG-------------SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFG 70 (253)
T ss_pred eEEEEeEEEEeC-------------CeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECC
Confidence 589999999875 35699999999999999999999999999999999999876 599999999
Q ss_pred EeCC--h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 010509 113 KPFS--N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLIGG 182 (508)
Q Consensus 113 ~~~~--~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~ 182 (508)
+++. . ..++.++|++|++.+++.+||.||+.+....+.. ..+.++..++++++++.+|+.+ ..++.
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 146 (253)
T PRK14267 71 RNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDY--- 146 (253)
T ss_pred EEccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccC---
Confidence 9874 1 3456799999999999999999999886543210 1133444567888999999853 23333
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+..++|++++|+
T Consensus 147 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l~ 222 (253)
T PRK14267 147 --PSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK-EYTIVLVTHSPA-QAARVSDYVAFLY 222 (253)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh-CCEEEEEECCHH-HHHhhCCEEEEEE
Confidence 458999999999999999999999999999999999999999999999975 699999999986 5778899999999
Q ss_pred CCeEEEEcChhhHH
Q 010509 263 EGYPLYSGEASGAM 276 (508)
Q Consensus 263 ~G~iv~~G~~~~~~ 276 (508)
+|+++..|++++..
T Consensus 223 ~G~i~~~~~~~~~~ 236 (253)
T PRK14267 223 LGKLIEVGPTRKVF 236 (253)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999987663
No 131
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=5.6e-45 Score=364.17 Aligned_cols=228 Identities=24% Similarity=0.406 Sum_probs=190.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++++.... ....+++.+|+|+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~~~~----~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 77 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGL----FGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQ 77 (265)
T ss_pred eEEEEeEEEEeccCcc----ccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccc
Confidence 4889999998752100 000113579999999999999999999999999999999999999999999999998742
Q ss_pred -------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCc
Q 010509 118 -------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRG 187 (508)
Q Consensus 118 -------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~ 187 (508)
..++.++|++|++ .+++.+||+||+.+..... ......+.+++++++++.+||. +..++.+ ++
T Consensus 78 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~ 150 (265)
T TIGR02769 78 LDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHL--TSLDESEQKARIAELLDMVGLRSEDADKLP-----RQ 150 (265)
T ss_pred cCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHcCCChhhhhCCh-----hh
Confidence 1356799999996 4677899999998754321 1123334556788999999996 5666655 48
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||++. .+..++|++++|++|++
T Consensus 151 LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~-~~~~~~d~i~~l~~G~i 229 (265)
T TIGR02769 151 LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLR-LVQSFCQRVAVMDKGQI 229 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHHhcEEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999865 899999999986 57788999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
++.|++++...
T Consensus 230 ~~~g~~~~~~~ 240 (265)
T TIGR02769 230 VEECDVAQLLS 240 (265)
T ss_pred EEECCHHHHcC
Confidence 99999887643
No 132
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.9e-45 Score=365.78 Aligned_cols=219 Identities=25% Similarity=0.411 Sum_probs=190.2
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
.+++++|+++.++. +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 6 ~~l~~~nl~~~~~~-----------~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~ 74 (271)
T PRK13632 6 VMIKVENVSFSYPN-----------SENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITIS 74 (271)
T ss_pred eEEEEEeEEEEcCC-----------CCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecC
Confidence 47999999998741 1356999999999999999999999999999999999999999999999999874
Q ss_pred h----hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 117 N----QMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
. ..++.++|++|++. .++.+|++||+.+..... ..+.++.+++++++++.+||.+..++.++ .||||
T Consensus 75 ~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G 146 (271)
T PRK13632 75 KENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK---KVPPKKMKDIIDDLAKKVGMEDYLDKEPQ-----NLSGG 146 (271)
T ss_pred cCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCHHHhhCCcc-----cCCHH
Confidence 2 35678999999974 677789999998865322 23444556678999999999988877664 89999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||||++||+||+.+|++|+|||||+|||+.++..+++.|++++++ ++|||++||+++. +. .+|++++|++|+++..|
T Consensus 147 ~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~-~~-~~d~v~~l~~G~i~~~g 224 (271)
T PRK13632 147 QKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE-AI-LADKVIVFSEGKLIAQG 224 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH-Hh-hCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999999876 5999999999974 44 79999999999999999
Q ss_pred ChhhHH
Q 010509 271 EASGAM 276 (508)
Q Consensus 271 ~~~~~~ 276 (508)
++++..
T Consensus 225 ~~~~~~ 230 (271)
T PRK13632 225 KPKEIL 230 (271)
T ss_pred CHHHHh
Confidence 987654
No 133
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=4.1e-45 Score=363.17 Aligned_cols=218 Identities=25% Similarity=0.423 Sum_probs=187.8
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
|+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~ 68 (256)
T TIGR03873 2 LRLSRVSWSAG-------------GRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGL 68 (256)
T ss_pred ceEEeEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccC
Confidence 67899998875 3579999999999999999999999999999999999999999999999998743
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
..++.++|++|++.+++.+||.||+.+....... ......+..+++.++++.+|+.+..++.++ .||||||
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~ 143 (256)
T TIGR03873 69 SRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMS-----TLSGGER 143 (256)
T ss_pred CHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcc-----cCCHHHH
Confidence 3355799999998888889999999875311000 001112334578899999999887777664 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||+++ .+.+++|++++|++|+++..|+++
T Consensus 144 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~ 222 (256)
T TIGR03873 144 QRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLN-LAASYCDHVVVLDGGRVVAAGPPR 222 (256)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEeCCCEEEecCHH
Confidence 9999999999999999999999999999999999999999877899999999987 577899999999999999999987
Q ss_pred hH
Q 010509 274 GA 275 (508)
Q Consensus 274 ~~ 275 (508)
+.
T Consensus 223 ~~ 224 (256)
T TIGR03873 223 EV 224 (256)
T ss_pred Hh
Confidence 65
No 134
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.6e-45 Score=366.09 Aligned_cols=233 Identities=22% Similarity=0.366 Sum_probs=195.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++... +...+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~~~-------~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~ 76 (280)
T PRK13633 4 MIKCKNVSYKYESNE-------ESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSD 76 (280)
T ss_pred eEEEeeeEEEcCCCC-------CCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccc
Confidence 689999999975211 0013569999999999999999999999999999999999999999999999998742
Q ss_pred -----hccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 118 -----QMTRNTGFVTQEDV--LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
..++.++|++|++. ++ ..||.|++.|..... ..++.+.+++++++++.+||.+..++.++ +|||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~-~~~v~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LS~ 147 (280)
T PRK13633 77 EENLWDIRNKAGMVFQNPDNQIV-ATIVEEDVAFGPENL---GIPPEEIRERVDESLKKVGMYEYRRHAPH-----LLSG 147 (280)
T ss_pred cccHHHHhhheEEEecChhhhhc-cccHHHHHHhhHhhc---CCCHHHHHHHHHHHHHHCCCHhHhhCCcc-----cCCH
Confidence 34678999999974 44 469999998875432 23445556778999999999988887764 9999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
|||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++. +.. +|++++|++|+++..
T Consensus 148 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~-~~~-~d~v~~l~~G~i~~~ 225 (280)
T PRK13633 148 GQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AVE-ADRIIVMDSGKVVME 225 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHH-Hhc-CCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999976 49999999999974 544 999999999999999
Q ss_pred cChhhHHHH---HHhcCCCCCC
Q 010509 270 GEASGAMNY---FASIGYCPSV 288 (508)
Q Consensus 270 G~~~~~~~~---f~~~g~~~p~ 288 (508)
|++++.... +...++..|.
T Consensus 226 g~~~~~~~~~~~~~~~~~~~~~ 247 (280)
T PRK13633 226 GTPKEIFKEVEMMKKIGLDVPQ 247 (280)
T ss_pred cCHHHHhcChHHHHhcCCCCCc
Confidence 999887532 3345555444
No 135
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.4e-45 Score=353.21 Aligned_cols=208 Identities=28% Similarity=0.454 Sum_probs=178.8
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++. .|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 i~~~~l~~~~~-------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~ 65 (211)
T cd03298 1 VRLDKIRFSYG-------------EQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAA 65 (211)
T ss_pred CEEEeEEEEeC-------------CEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcC
Confidence 46789998864 122 39999999999999999999999999999999999999999999998743
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++|++.+++.+|++||+.+...... .. .++.+++++++++.+||.+..++.+ .+||||||||+
T Consensus 66 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~-~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv 137 (211)
T cd03298 66 PPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGL--KL-TAEDRQAIEVALARVGLAGLEKRLP-----GELSGGERQRV 137 (211)
T ss_pred CHhHccEEEEecccccCCCCcHHHHHhccccccc--Cc-cHHHHHHHHHHHHHcCCHHHHhCCc-----ccCCHHHHHHH
Confidence 235679999999999999999999987543211 11 1234567889999999988777765 48999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
+||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.+++|++++|++|+++..|
T Consensus 138 ~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 138 ALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPE-DAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999999976 4899999999986 577889999999999998654
No 136
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-45 Score=364.32 Aligned_cols=224 Identities=25% Similarity=0.420 Sum_probs=193.9
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-C----cccEEEECCE
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-R----INGRITYNGK 113 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-~----~~G~I~~~G~ 113 (508)
|+++||+.++.... +..++++||||++++||++||+|.|||||||+.++|.|+++ + .+|+|.++|+
T Consensus 2 L~v~nL~v~f~~~~---------g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~ 72 (316)
T COG0444 2 LEVKNLSVSFPTDA---------GVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGK 72 (316)
T ss_pred ceEeeeEEEEecCC---------ccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCc
Confidence 68999999987421 13579999999999999999999999999999999999986 3 5799999999
Q ss_pred eCCh----h----ccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCC-CHHHHHHHHHHHHHHcCCCcccccccCC
Q 010509 114 PFSN----Q----MTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSF-TEKEKIKCAEAVMTELGLSECKNSLIGG 182 (508)
Q Consensus 114 ~~~~----~----~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~-~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 182 (508)
++.+ + ..+.|+||||++ .|.|.+||.+.+.-...... .. ++++.++++.++|+.+||.+.... -+
T Consensus 73 ~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~--~~~~~~ea~~~a~~~L~~Vgi~~~~~~--~~ 148 (316)
T COG0444 73 DLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHG--KGLSKKEAKERAIELLELVGIPDPERR--LK 148 (316)
T ss_pred ccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhh--cchhhHHHHHHHHHHHHHcCCCCHHHH--Hh
Confidence 7632 1 235799999997 58999999999887765432 22 456778899999999999875322 24
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEE
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
.+|.+|||||||||.||.||+.+|++||.||||++||...+.+|+++|+++++ .|.++|++|||+. .+.++||||+||
T Consensus 149 ~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~-vva~~aDri~VM 227 (316)
T COG0444 149 SYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLG-VVAEIADRVAVM 227 (316)
T ss_pred hCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceEEEE
Confidence 67899999999999999999999999999999999999999999999999986 5999999999997 688999999999
Q ss_pred eCCeEEEEcChhhHH
Q 010509 262 SEGYPLYSGEASGAM 276 (508)
Q Consensus 262 ~~G~iv~~G~~~~~~ 276 (508)
+.|++|+.|+++++.
T Consensus 228 YaG~iVE~g~~~~i~ 242 (316)
T COG0444 228 YAGRIVEEGPVEEIF 242 (316)
T ss_pred ECcEEEEeCCHHHHh
Confidence 999999999998764
No 137
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=4e-45 Score=357.26 Aligned_cols=212 Identities=25% Similarity=0.394 Sum_probs=183.1
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
|+++|+++.++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 67 (230)
T TIGR03410 1 LEVSNLNVYYG-------------QSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKL 67 (230)
T ss_pred CEEEeEEEEeC-------------CeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCC
Confidence 46789998875 3579999999999999999999999999999999999999999999999998742
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CCcccccccCCCCCCccCHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELG-LSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++.+++.+|+.||+.+....+ ... ..+.++++++.++ +.+..++.+ ++|||||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~---~~~---~~~~~~~~l~~~~~l~~~~~~~~-----~~LS~G~ 136 (230)
T TIGR03410 68 PPHERARAGIAYVPQGREIFPRLTVEENLLTGLAAL---PRR---SRKIPDEIYELFPVLKEMLGRRG-----GDLSGGQ 136 (230)
T ss_pred CHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhc---Ccc---hHHHHHHHHHHHHhHHHHhhCCh-----hhCCHHH
Confidence 12457999999999999999999998865432 111 1234567788776 566566655 4899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+..++|++++|++|+++..|+
T Consensus 137 ~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~g~i~~~~~ 215 (230)
T TIGR03410 137 QQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLD-FARELADRYYVMERGRVVASGA 215 (230)
T ss_pred HHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999874 899999999986 5778899999999999999999
Q ss_pred hhhH
Q 010509 272 ASGA 275 (508)
Q Consensus 272 ~~~~ 275 (508)
++++
T Consensus 216 ~~~~ 219 (230)
T TIGR03410 216 GDEL 219 (230)
T ss_pred HHHc
Confidence 8776
No 138
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-45 Score=345.31 Aligned_cols=219 Identities=29% Similarity=0.494 Sum_probs=192.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+.+||+|++. ++.+|++||++++|||++||+||||||||||||.|+|.+.|++|++.+||.+++.
T Consensus 1 mi~a~nls~~~~-------------Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~ 67 (259)
T COG4559 1 MIRAENLSYSLA-------------GRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNS 67 (259)
T ss_pred CeeeeeeEEEee-------------cceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhh
Confidence 478899999986 5789999999999999999999999999999999999999999999999998854
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
++.++.+.+||+..+-...||+|.+.++..-.. ......+..+.++++|+..++.+.+.+.+ +.||||||
T Consensus 68 ~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~-~g~~~~e~~~i~~~ala~~d~~~la~R~y-----~~LSGGEq 141 (259)
T COG4559 68 WPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHR-SGREPEEDERIAAQALAATDLSGLAGRDY-----RTLSGGEQ 141 (259)
T ss_pred CCHHHHHHHhhhcccCcccccceEHHHHHHhcccccc-cCCCchhhHHHHHHHHHHcChhhhhccch-----hhcCchHH
Confidence 456788999999887556799999999753221 11122355566799999999999988776 48999999
Q ss_pred HHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 194 KRVSIGQEILI------NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 194 qRv~Ia~aL~~------~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||.+||.|+. ++++||||||||.||...+..++++.++++++|..|+++.||++. ...+||||++|++||++
T Consensus 142 QRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNL-AA~YaDrivll~~Grv~ 220 (259)
T COG4559 142 QRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNL-AAQYADRIVLLHQGRVI 220 (259)
T ss_pred HHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchH-HHHhhheeeeeeCCeEe
Confidence 99999999975 446999999999999999999999999999999999999999984 66899999999999999
Q ss_pred EEcChhhHH
Q 010509 268 YSGEASGAM 276 (508)
Q Consensus 268 ~~G~~~~~~ 276 (508)
.+|+|++++
T Consensus 221 a~g~p~~vl 229 (259)
T COG4559 221 ASGSPQDVL 229 (259)
T ss_pred ecCCHHHhc
Confidence 999999875
No 139
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=8.3e-45 Score=354.59 Aligned_cols=214 Identities=29% Similarity=0.484 Sum_probs=183.0
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
.+|+++|++++++... ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 5 ~~l~~~~l~~~~~~~~---------~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~ 75 (228)
T PRK10584 5 NIVEVHHLKKSVGQGE---------HELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLH 75 (228)
T ss_pred ceEEEeeeEEEccCCC---------cceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcc
Confidence 3699999999875210 0135999999999999999999999999999999999999999999999999874
Q ss_pred h----h---c-cccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCcc
Q 010509 117 N----Q---M-TRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGV 188 (508)
Q Consensus 117 ~----~---~-~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 188 (508)
. . . ++.++|++|++.+++.+|+.||+.+....+ ..+..+.+++++++++.+||.+..++.+. .|
T Consensus 76 ~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~L 147 (228)
T PRK10584 76 QMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLR---GESSRQSRNGAKALLEQLGLGKRLDHLPA-----QL 147 (228)
T ss_pred cCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChh-----hC
Confidence 2 1 1 257999999999999999999998765332 12344556778999999999887776654 89
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|||++||+++ .+. .+|++++|++|+++
T Consensus 148 S~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~-~~~-~~d~i~~l~~g~i~ 225 (228)
T PRK10584 148 SGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQ-LAA-RCDRRLRLVNGQLQ 225 (228)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHH-hCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 899999999987 454 59999999999987
Q ss_pred EE
Q 010509 268 YS 269 (508)
Q Consensus 268 ~~ 269 (508)
..
T Consensus 226 ~~ 227 (228)
T PRK10584 226 EE 227 (228)
T ss_pred ec
Confidence 53
No 140
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=7.4e-45 Score=362.56 Aligned_cols=219 Identities=27% Similarity=0.464 Sum_probs=187.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc---ccEEEECCEe
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI---NGRITYNGKP 114 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~---~G~I~~~G~~ 114 (508)
.|+++||+++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|+ +|+|.++|++
T Consensus 4 ~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~ 70 (262)
T PRK09984 4 IIRVEKLAKTFN-------------QHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRT 70 (262)
T ss_pred EEEEeeEEEEeC-------------CeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEe
Confidence 689999999875 357999999999999999999999999999999999998765 5999999988
Q ss_pred CCh---------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHcCCCccccccc
Q 010509 115 FSN---------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN-----SFTEKEKIKCAEAVMTELGLSECKNSLI 180 (508)
Q Consensus 115 ~~~---------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~v 180 (508)
+.. ..++.++|++|++.+++.+||.||+.+......+. ....++.+++++++++.+||.+..++.+
T Consensus 71 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 71 VQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCc
Confidence 632 23457999999999999999999998754211000 0112334567899999999988777766
Q ss_pred CCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEE
Q 010509 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVL 259 (508)
Q Consensus 181 g~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~ 259 (508)
+ +||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+..++|+++
T Consensus 151 ~-----~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~-~~~~~~d~i~ 224 (262)
T PRK09984 151 S-----TLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVD-YALRYCERIV 224 (262)
T ss_pred c-----ccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEE
Confidence 4 8999999999999999999999999999999999999999999999986 4899999999986 4778999999
Q ss_pred EEeCCeEEEEcChhhH
Q 010509 260 LLSEGYPLYSGEASGA 275 (508)
Q Consensus 260 lL~~G~iv~~G~~~~~ 275 (508)
+|++|++++.|++++.
T Consensus 225 ~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 225 ALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEECCEEEEeCCHHHh
Confidence 9999999999998753
No 141
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-44 Score=360.37 Aligned_cols=218 Identities=24% Similarity=0.372 Sum_probs=186.3
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEE
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITY 110 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~ 110 (508)
...++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.+
T Consensus 11 ~~~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~ 77 (260)
T PRK10744 11 PSKIQVRNLNFYYG-------------KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILL 77 (260)
T ss_pred CceEEEEEEEEEeC-------------CeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEE
Confidence 44699999999875 3469999999999999999999999999999999999975 47999999
Q ss_pred CCEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccc
Q 010509 111 NGKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLI 180 (508)
Q Consensus 111 ~G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v 180 (508)
+|+++.. ..++.++|++|++.+++ .|++||+.+...... ..+.++..++++++++.+++.+ ..++.
T Consensus 78 ~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 153 (260)
T PRK10744 78 DGENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQS- 153 (260)
T ss_pred CCEEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcC-
Confidence 9998731 34668999999998887 899999987653221 2344455567889999999853 33443
Q ss_pred CCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEE
Q 010509 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLL 260 (508)
Q Consensus 181 g~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~l 260 (508)
+.+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++. .+..++|++++
T Consensus 154 ----~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i~~ 227 (260)
T PRK10744 154 ----GYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ-DYTVVIVTHNMQ-QAARCSDYTAF 227 (260)
T ss_pred ----CCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEE
Confidence 458999999999999999999999999999999999999999999999964 789999999986 57788999999
Q ss_pred EeCCeEEEEcChhhHH
Q 010509 261 LSEGYPLYSGEASGAM 276 (508)
Q Consensus 261 L~~G~iv~~G~~~~~~ 276 (508)
|++|+++..|++++..
T Consensus 228 l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 228 MYLGELIEFGNTDTIF 243 (260)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999987663
No 142
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-45 Score=358.18 Aligned_cols=212 Identities=29% Similarity=0.447 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 69 (241)
T PRK14250 3 EIEFKEVSYSSF-------------GKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKT 69 (241)
T ss_pred eEEEEeEEEEeC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhh
Confidence 588999999864 3569999999999999999999999999999999999999999999999998742
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++.+++ .|++||+.+....+ . ...++++++++.+||. +..++.+ ..|||||
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~---~----~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G~ 136 (241)
T PRK14250 70 IDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLK---G----EKNVDVEYYLSIVGLNKEYATRDV-----KNLSGGE 136 (241)
T ss_pred cChHHhhhcEEEEecCchhch-hhHHHHHhcchhhc---C----cHHHHHHHHHHHcCCCHHHhhCCc-----ccCCHHH
Confidence 34568999999998887 69999998653221 1 1134678899999996 4556544 4899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+++|++++|++|+++..|+
T Consensus 137 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~-~~~~~~d~i~~l~~G~i~~~~~ 215 (241)
T PRK14250 137 AQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNME-QAKRIGDYTAFLNKGILVEYAK 215 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH-HHHHhCCEEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999874 999999999986 5778899999999999999999
Q ss_pred hhhHH
Q 010509 272 ASGAM 276 (508)
Q Consensus 272 ~~~~~ 276 (508)
+++..
T Consensus 216 ~~~~~ 220 (241)
T PRK14250 216 TYDFF 220 (241)
T ss_pred HHHHh
Confidence 87753
No 143
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-44 Score=363.93 Aligned_cols=220 Identities=25% Similarity=0.388 Sum_probs=191.0
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcc---cEEEECCE
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN---GRITYNGK 113 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~---G~I~~~G~ 113 (508)
..|+++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++ |+|.++|+
T Consensus 4 ~~l~i~~l~~~~~~-----------~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~ 72 (282)
T PRK13640 4 NIVEFKHVSFTYPD-----------SKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGI 72 (282)
T ss_pred ceEEEEEEEEEcCC-----------CCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCE
Confidence 36999999998741 12469999999999999999999999999999999999998887 99999999
Q ss_pred eCCh----hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCcc
Q 010509 114 PFSN----QMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGV 188 (508)
Q Consensus 114 ~~~~----~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 188 (508)
++.. ..++.+||++|++. .++..||.||+.+..... ..+.++..++++++++.+||.+..++.+ +.|
T Consensus 73 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----~~L 144 (282)
T PRK13640 73 TLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR---AVPRPEMIKIVRDVLADVGMLDYIDSEP-----ANL 144 (282)
T ss_pred ECCcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC---CCCHHHHHHHHHHHHHHCCChhHhcCCc-----ccC
Confidence 8753 34568999999974 667789999998764322 2345566678899999999998777665 599
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++. + ..||++++|++|+++
T Consensus 145 S~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~-~-~~~d~i~~l~~G~i~ 222 (282)
T PRK13640 145 SGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE-A-NMADQVLVLDDGKLL 222 (282)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHH-H-HhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999865 9999999999874 5 479999999999999
Q ss_pred EEcChhhHHH
Q 010509 268 YSGEASGAMN 277 (508)
Q Consensus 268 ~~G~~~~~~~ 277 (508)
+.|++++..+
T Consensus 223 ~~g~~~~~~~ 232 (282)
T PRK13640 223 AQGSPVEIFS 232 (282)
T ss_pred EeCCHHHHhc
Confidence 9999987754
No 144
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-44 Score=371.95 Aligned_cols=227 Identities=20% Similarity=0.282 Sum_probs=187.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC----CcccEEEECCE
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG----RINGRITYNGK 113 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~----~~~G~I~~~G~ 113 (508)
.|+++||++.|... .+...+|+||||+|++||+++|+|+||||||||+++|+|+++ +++|+|.++|+
T Consensus 3 ~L~v~~l~~~y~~~---------~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~ 73 (330)
T PRK15093 3 LLDIRNLTIEFKTS---------DGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDI 73 (330)
T ss_pred eEEEeeeEEEEeCC---------CCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCE
Confidence 58999999998521 113569999999999999999999999999999999999985 58999999999
Q ss_pred eCCh----h----ccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCC---CCHHHHHHHHHHHHHHcCCCccccccc
Q 010509 114 PFSN----Q----MTRNTGFVTQEDV--LSPYLTVTETMVFTALLQLPNS---FTEKEKIKCAEAVMTELGLSECKNSLI 180 (508)
Q Consensus 114 ~~~~----~----~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~---~~~~~~~~~v~~~l~~lgL~~~~~~~v 180 (508)
++.. . .++.++||+|++. +.|.+||.+++.+......... ....+.++++.++++.+||.+..+.
T Consensus 74 ~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~-- 151 (330)
T PRK15093 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDA-- 151 (330)
T ss_pred ECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHH--
Confidence 8742 1 1347999999975 6888999999976432111000 1123445678899999999753221
Q ss_pred CCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEE
Q 010509 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVL 259 (508)
Q Consensus 181 g~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~ 259 (508)
.+.++.+|||||||||+||+||+.+|++|++||||+|||+.++.++++.|+++.++ |.|||++|||++ .+.+++||++
T Consensus 152 ~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~-~v~~~~dri~ 230 (330)
T PRK15093 152 MRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQ-MLSQWADKIN 230 (330)
T ss_pred HhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEE
Confidence 12345699999999999999999999999999999999999999999999999874 999999999986 5778999999
Q ss_pred EEeCCeEEEEcChhhHH
Q 010509 260 LLSEGYPLYSGEASGAM 276 (508)
Q Consensus 260 lL~~G~iv~~G~~~~~~ 276 (508)
+|++|++++.|+++++.
T Consensus 231 vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 231 VLYCGQTVETAPSKELV 247 (330)
T ss_pred EEECCEEEEECCHHHHH
Confidence 99999999999988764
No 145
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-44 Score=360.67 Aligned_cols=220 Identities=23% Similarity=0.376 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~~G 112 (508)
.|+++|+++.++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| ++|+|.++|
T Consensus 19 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g 85 (267)
T PRK14235 19 KMRARDVSVFYG-------------EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDG 85 (267)
T ss_pred eEEEEeEEEEEC-------------CEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 799999999875 35699999999999999999999999999999999999864 899999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
+++.. ..++.++|++|++.+++. ||.||+.+....+.. ..++.+..++++++++.+||.+...... +..++
T Consensus 86 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 162 (267)
T PRK14235 86 EDIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRL-HEPGT 162 (267)
T ss_pred EECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHh-hCCcc
Confidence 98742 245679999999988885 999999886543211 1123344567889999999964211111 12345
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+..++|++++|++|++
T Consensus 163 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~i 240 (267)
T PRK14235 163 GLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ-NYTIVIVTHSMQ-QAARVSQRTAFFHLGNL 240 (267)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc-CCeEEEEEcCHH-HHHhhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999976 689999999986 57789999999999999
Q ss_pred EEEcChhhH
Q 010509 267 LYSGEASGA 275 (508)
Q Consensus 267 v~~G~~~~~ 275 (508)
+..|++++.
T Consensus 241 ~~~g~~~~~ 249 (267)
T PRK14235 241 VEVGDTEKM 249 (267)
T ss_pred EEeCCHHHH
Confidence 999988765
No 146
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.6e-45 Score=355.33 Aligned_cols=214 Identities=27% Similarity=0.436 Sum_probs=185.0
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++. .|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------------~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 66 (232)
T PRK10771 2 LKLTDITWLYH-------------HLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTT 66 (232)
T ss_pred eEEEEEEEEEC-------------Ccc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcC
Confidence 78999999875 122 38999999999999999999999999999999999999999999998753
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++|++.+++.+|+.||+.+...... . ..+...++++++++.+||.+..++.+. .||||||||+
T Consensus 67 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv 138 (232)
T PRK10771 67 PPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--K-LNAAQREKLHAIARQMGIEDLLARLPG-----QLSGGQRQRV 138 (232)
T ss_pred ChhhccEEEEecccccccCCcHHHHHhccccccc--C-CCHHHHHHHHHHHHHcCcHHHHhCCcc-----cCCHHHHHHH
Confidence 234679999999999999999999987532111 1 122345678999999999888877764 8999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
+||++++.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||++. .+.+++|++++|++|++++.|++++.
T Consensus 139 ~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~i~~~g~~~~~ 217 (232)
T PRK10771 139 ALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE-DAARIAPRSLVVADGRIAWDGPTDEL 217 (232)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999764 899999999986 57788999999999999999988765
Q ss_pred H
Q 010509 276 M 276 (508)
Q Consensus 276 ~ 276 (508)
.
T Consensus 218 ~ 218 (232)
T PRK10771 218 L 218 (232)
T ss_pred H
Confidence 4
No 147
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-44 Score=366.11 Aligned_cols=221 Identities=20% Similarity=0.324 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC-
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS- 116 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~- 116 (508)
.|+++|++++++... ...+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 6 ~l~i~nl~~~~~~~~--------~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 77 (289)
T PRK13645 6 DIILDNVSYTYAKKT--------PFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPA 77 (289)
T ss_pred eEEEEEEEEEeCCCC--------ccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccc
Confidence 589999999875210 00135999999999999999999999999999999999999999999999998863
Q ss_pred --------hhccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 010509 117 --------NQMTRNTGFVTQEDV--LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLT 185 (508)
Q Consensus 117 --------~~~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~ 185 (508)
...++.++|++|++. +++ .|++||+.+..... ....++..++++++++.++|. +..++.+
T Consensus 78 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~---~~~~~~~~~~~~~ll~~~~L~~~~~~~~~----- 148 (289)
T PRK13645 78 NLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNL---GENKQEAYKKVPELLKLVQLPEDYVKRSP----- 148 (289)
T ss_pred cccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCChhHhcCCh-----
Confidence 134567999999973 444 59999998865321 223444556788899999994 5666655
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
+.||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||+++ .+.++||++++|++|
T Consensus 149 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~-~~~~~~d~i~~l~~G 227 (289)
T PRK13645 149 FELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMD-QVLRIADEVIVMHEG 227 (289)
T ss_pred hhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECC
Confidence 48999999999999999999999999999999999999999999999976 4899999999986 577899999999999
Q ss_pred eEEEEcChhhHH
Q 010509 265 YPLYSGEASGAM 276 (508)
Q Consensus 265 ~iv~~G~~~~~~ 276 (508)
++++.|++++..
T Consensus 228 ~i~~~g~~~~~~ 239 (289)
T PRK13645 228 KVISIGSPFEIF 239 (289)
T ss_pred EEEEeCCHHHHh
Confidence 999999988764
No 148
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-44 Score=354.02 Aligned_cols=216 Identities=28% Similarity=0.428 Sum_probs=189.8
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ .+.+++|+|+++++||+++|+||||||||||+++|+|.++|.+|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~ 67 (232)
T cd03300 1 IELENVSKFYG-------------GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNL 67 (232)
T ss_pred CEEEeEEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC
Confidence 46789998875 3579999999999999999999999999999999999999999999999998753
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++|++.+++.+|+.||+.+....+ ..+.....++++++++.+|+.+..++.+ +.||||||||+
T Consensus 68 ~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G~~qrl 139 (232)
T cd03300 68 PPHKRPVNTVFQNYALFPHLTVFENIAFGLRLK---KLPKAEIKERVAEALDLVQLEGYANRKP-----SQLSGGQQQRV 139 (232)
T ss_pred ChhhcceEEEecccccCCCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHH
Confidence 23568999999999999999999998765433 1233445567889999999988877765 48999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||+++|++. .+.+.+|++++|++|++++.|+.++.
T Consensus 140 ~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~i~~l~~G~~~~~~~~~~~ 218 (232)
T cd03300 140 AIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQE-EALTMSDRIAVMNKGKIQQIGTPEEI 218 (232)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhcCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999999865 899999999986 57789999999999999999987655
Q ss_pred H
Q 010509 276 M 276 (508)
Q Consensus 276 ~ 276 (508)
.
T Consensus 219 ~ 219 (232)
T cd03300 219 Y 219 (232)
T ss_pred H
Confidence 3
No 149
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=8.6e-45 Score=356.84 Aligned_cols=202 Identities=31% Similarity=0.447 Sum_probs=176.8
Q ss_pred ccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh---hccccEEEEe-cCCCCCCC
Q 010509 60 KIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN---QMTRNTGFVT-QEDVLSPY 135 (508)
Q Consensus 60 ~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~---~~~~~i~yv~-Q~~~l~~~ 135 (508)
+++.+++|+|+||++++||+++|+|||||||||||++|+|+++|++|+|.++|+++.. ..++.++|++ |++.+++.
T Consensus 30 ~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 109 (236)
T cd03267 30 KYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWWD 109 (236)
T ss_pred ccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCCC
Confidence 3456789999999999999999999999999999999999999999999999987532 3456899998 55678889
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 010509 136 LTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPT 215 (508)
Q Consensus 136 lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPt 215 (508)
+|++|++.+....+ ....++..++++++++.+||.+..++.++ .||||||||++||++|+.+|++++|||||
T Consensus 110 ~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LS~G~~qrl~la~al~~~p~llllDEPt 181 (236)
T cd03267 110 LPVIDSFYLLAAIY---DLPPARFKKRLDELSELLDLEELLDTPVR-----QLSLGQRMRAEIAAALLHEPEILFLDEPT 181 (236)
T ss_pred CcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 99999998865432 22344455678889999999988887764 89999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 216 SGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 216 sgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
+|||+.++..+.+.|++++++ |+|||++||+++ .+..++|++++|++|++++.|
T Consensus 182 ~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 182 IGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMK-DIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999764 899999999986 577899999999999998765
No 150
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=1.4e-44 Score=355.44 Aligned_cols=216 Identities=26% Similarity=0.413 Sum_probs=190.0
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|.+|+|.++|.++..
T Consensus 1 i~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~ 67 (237)
T TIGR00968 1 IEIANISKRFG-------------SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRV 67 (237)
T ss_pred CEEEEEEEEEC-------------CeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcC
Confidence 46789998875 3579999999999999999999999999999999999999999999999998753
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++|++.+++.+|+.||+.+....+ ..+.....+.++++++.+++.+..++.++ .||||||||+
T Consensus 68 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~qrl 139 (237)
T TIGR00968 68 HARDRKIGFVFQHYALFKHLTVRDNIAFGLEIR---KHPKAKIKARVEELLELVQLEGLGDRYPN-----QLSGGQRQRV 139 (237)
T ss_pred ChhhcCEEEEecChhhccCCcHHHHHHhHHHhc---CCCHHHHHHHHHHHHHHcCCHhHhhCChh-----hCCHHHHHHH
Confidence 33567999999999999999999998765432 12333445677899999999877776654 8999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|++++|++|++++.|+.++.
T Consensus 140 ~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 218 (237)
T TIGR00968 140 ALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQE-EAMEVADRIVVMSNGKIEQIGSPDEV 218 (237)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999875 899999999986 57789999999999999999998876
Q ss_pred H
Q 010509 276 M 276 (508)
Q Consensus 276 ~ 276 (508)
.
T Consensus 219 ~ 219 (237)
T TIGR00968 219 Y 219 (237)
T ss_pred H
Confidence 4
No 151
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-44 Score=356.25 Aligned_cols=221 Identities=22% Similarity=0.360 Sum_probs=184.2
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC---CCC--cccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR---LGR--INGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~---~~~--~~G~I~~~ 111 (508)
++++++|+++.++ .+++|+|+|+++++||+++|+||||||||||+++|+|+ .++ ++|+|.++
T Consensus 2 ~~l~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~ 68 (250)
T PRK14245 2 VKIDARDVNFWYG-------------DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRID 68 (250)
T ss_pred cEEEEEEEEEEEC-------------CEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEEC
Confidence 4689999999875 35699999999999999999999999999999999997 344 58999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
|+++.. ..++.++|++|++.+++ .|+.||+.+....+. ....+...+.++++++.+||.+...... +..+
T Consensus 69 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 144 (250)
T PRK14245 69 GRNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNG--VKDNAFIRQRVEETLKGAALWDEVKDKL-KESA 144 (250)
T ss_pred CEecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCcchhhhh-hCCc
Confidence 998742 34567999999998887 599999987654321 1122334566889999999964321111 1234
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
+.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++||+++|++|+
T Consensus 145 ~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~v~~l~~G~ 222 (250)
T PRK14245 145 FALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK-DYTIVIVTHNMQ-QAARVSDKTAFFYMGE 222 (250)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhCCEEEEEECCE
Confidence 58999999999999999999999999999999999999999999999964 799999999986 5778899999999999
Q ss_pred EEEEcChhhHH
Q 010509 266 PLYSGEASGAM 276 (508)
Q Consensus 266 iv~~G~~~~~~ 276 (508)
+++.|+++++.
T Consensus 223 ~~~~~~~~~~~ 233 (250)
T PRK14245 223 MVEYDDTKKIF 233 (250)
T ss_pred EEEECCHHHHh
Confidence 99999988774
No 152
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=1.6e-44 Score=361.24 Aligned_cols=227 Identities=18% Similarity=0.383 Sum_probs=189.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+++++.... .++.+.+++|+|+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~~~~----~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 79 (267)
T PRK15112 4 LLEVRNLSKTFRYRTG----WFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHF 79 (267)
T ss_pred eEEEeceEEEecCCCC----cccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCC
Confidence 5899999999852110 000113569999999999999999999999999999999999999999999999998742
Q ss_pred ----hccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCH
Q 010509 118 ----QMTRNTGFVTQEDV--LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSG 190 (508)
..++.++|++|++. +++.+|+.|++.+...... .....+..++++++++.+||. +..++.+ .+|||
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~ 152 (267)
T PRK15112 80 GDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNT--DLEPEQREKQIIETLRQVGLLPDHASYYP-----HMLAP 152 (267)
T ss_pred CchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCChHHHhcCc-----hhcCH
Confidence 23457999999975 6788899999987654321 123444556788999999994 5556554 48999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
|||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+..+||++++|++|+++..
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~-~~~~~~d~i~~l~~G~i~~~ 231 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLG-MMKHISDQVLVMHQGEVVER 231 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhcCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999999999999864 899999999986 57788999999999999999
Q ss_pred cChhhHH
Q 010509 270 GEASGAM 276 (508)
Q Consensus 270 G~~~~~~ 276 (508)
|++++..
T Consensus 232 ~~~~~~~ 238 (267)
T PRK15112 232 GSTADVL 238 (267)
T ss_pred CCHHHHh
Confidence 9887653
No 153
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-44 Score=358.20 Aligned_cols=217 Identities=22% Similarity=0.356 Sum_probs=185.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~~G 112 (508)
.++++|++++++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+.+| ++|+|.++|
T Consensus 4 ~l~i~~v~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g 70 (258)
T PRK14241 4 RIDVKDLNIYYG-------------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDG 70 (258)
T ss_pred cEEEeeEEEEEC-------------CEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECC
Confidence 588999999875 35699999999999999999999999999999999999863 799999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS----ECKNSLIGG 182 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~ 182 (508)
+++.. ..++.++|++|++.+++.+||+||+.+....+. ..+.++.+++++++++.+||. +..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (258)
T PRK14241 71 EDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNG--VRNKKDLDELVEKSLRGANLWNEVKDRLDKP--- 145 (258)
T ss_pred EeccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhhHhhCC---
Confidence 98631 345679999999999999999999988654321 113344556788999999984 334444
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+++|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+++|++++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tviivsH~~~-~~~~~~d~i~~l~ 221 (258)
T PRK14241 146 --GGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ-DYTIVIVTHNMQ-QAARVSDQTAFFN 221 (258)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEe
Confidence 458999999999999999999999999999999999999999999999965 689999999986 5778999999997
Q ss_pred ------CCeEEEEcChhhHH
Q 010509 263 ------EGYPLYSGEASGAM 276 (508)
Q Consensus 263 ------~G~iv~~G~~~~~~ 276 (508)
+|++++.|++++..
T Consensus 222 ~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 222 LEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred cccCCCCceEEecCCHHHHH
Confidence 79999999987763
No 154
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3e-44 Score=361.27 Aligned_cols=219 Identities=23% Similarity=0.392 Sum_probs=189.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|++++++.. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~~~----------~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~ 73 (277)
T PRK13642 4 ILEVENLVFKYEKE----------SDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTA 73 (277)
T ss_pred eEEEEEEEEEcCCC----------CcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCc
Confidence 58999999987511 12459999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 ----QMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++. .++..||.||+.+..... ...+++..++++++++.+||.+..++.+ ..|||||
T Consensus 74 ~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~ 145 (277)
T PRK13642 74 ENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQ---GIPREEMIKRVDEALLAVNMLDFKTREP-----ARLSGGQ 145 (277)
T ss_pred CCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHc---CCCHHHHHHHHHHHHHHCCCHhHhhCCc-----ccCCHHH
Confidence 34678999999974 567789999998765322 2234455567899999999988777665 4899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
|||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++. +. .+|++++|++|+++..|+
T Consensus 146 ~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~-~~-~~d~i~~l~~G~i~~~g~ 223 (277)
T PRK13642 146 KQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDE-AA-SSDRILVMKAGEIIKEAA 223 (277)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH-HH-hCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999875 9999999999875 44 599999999999999999
Q ss_pred hhhHH
Q 010509 272 ASGAM 276 (508)
Q Consensus 272 ~~~~~ 276 (508)
+++..
T Consensus 224 ~~~~~ 228 (277)
T PRK13642 224 PSELF 228 (277)
T ss_pred HHHHh
Confidence 88764
No 155
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=1.3e-44 Score=375.89 Aligned_cols=197 Identities=29% Similarity=0.439 Sum_probs=176.9
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--------hccccEEEEecCCCCCCCCCHHH
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--------QMTRNTGFVTQEDVLSPYLTVTE 140 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--------~~~~~i~yv~Q~~~l~~~lTv~E 140 (508)
|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++.. ..++.++|++|++.+++.+||+|
T Consensus 15 ~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e 94 (354)
T TIGR02142 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHLSVRG 94 (354)
T ss_pred EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCccCCCCcHHH
Confidence 9999999999999999999999999999999999999999999998742 23567999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010509 141 TMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220 (508)
Q Consensus 141 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~ 220 (508)
|+.++.... ...+.+++++++++.+||.+..++.+. +|||||||||+|||||+.+|++|+|||||+|||+
T Consensus 95 nl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~ 164 (354)
T TIGR02142 95 NLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPG-----RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDD 164 (354)
T ss_pred HHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCH
Confidence 999865321 223445678999999999988887664 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHH
Q 010509 221 TIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 221 ~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
.++..+.+.|++++++ |+|||++||+++ ++..++|++++|++|+++..|+++++.
T Consensus 165 ~~~~~l~~~L~~l~~~~g~tiiivtH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (354)
T TIGR02142 165 PRKYEILPYLERLHAEFGIPILYVSHSLQ-EVLRLADRVVVLEDGRVAAAGPIAEVW 220 (354)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCEEEEECCHHHHh
Confidence 9999999999999875 899999999986 577899999999999999999988764
No 156
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=375.67 Aligned_cols=207 Identities=26% Similarity=0.432 Sum_probs=182.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
|++ ||+++++ ++. + |+|+++++||+++|+|||||||||||++|+|+++|++|+|.++|+++..
T Consensus 2 l~~-~l~k~~~-------------~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~ 65 (352)
T PRK11144 2 LEL-NFKQQLG-------------DLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDA 65 (352)
T ss_pred eEE-EEEEEeC-------------CEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccc
Confidence 566 8888764 222 3 8999999999999999999999999999999999999999999998642
Q ss_pred -------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 118 -------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 -------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
..++.++|++|+..++|.+||+||+.++.. ....++++++++.+||.+..++.+ ++|||
T Consensus 66 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------~~~~~~~~~~l~~~gl~~~~~~~~-----~~LSg 131 (352)
T PRK11144 66 EKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMA---------KSMVAQFDKIVALLGIEPLLDRYP-----GSLSG 131 (352)
T ss_pred ccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhh---------hhhHHHHHHHHHHcCCchhhhCCc-----ccCCH
Confidence 235689999999999999999999987532 122356889999999998887766 48999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||+|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |+|+|++|||++ ++..++|++++|++|+++..
T Consensus 132 Gq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~-~~~~~~d~i~~l~~G~i~~~ 210 (352)
T PRK11144 132 GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLD-EILRLADRVVVLEQGKVKAF 210 (352)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHH-HHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999999875 899999999986 57889999999999999999
Q ss_pred cChhhHH
Q 010509 270 GEASGAM 276 (508)
Q Consensus 270 G~~~~~~ 276 (508)
|+++++.
T Consensus 211 g~~~~i~ 217 (352)
T PRK11144 211 GPLEEVW 217 (352)
T ss_pred cCHHHHH
Confidence 9988774
No 157
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.4e-44 Score=355.69 Aligned_cols=221 Identities=24% Similarity=0.352 Sum_probs=184.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC---CcccEEEECCEe
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG---RINGRITYNGKP 114 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~---~~~G~I~~~G~~ 114 (508)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++ |++|+|.++|++
T Consensus 2 ~~~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~ 68 (246)
T PRK14269 2 IAKTTNLNLFYG-------------KKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKD 68 (246)
T ss_pred ceeeeeeEEEEC-------------CEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEe
Confidence 578899999875 3569999999999999999999999999999999999873 689999999998
Q ss_pred CCh----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 115 FSN----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 115 ~~~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
+.. ..++.++|++|++.+++ .|++||+.+....+. ......+..++++++++.++|.+...... +..++.|||
T Consensus 69 i~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~~LS~ 145 (246)
T PRK14269 69 VKNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHG-MIKNKDEEEALVVDCLQKVGLFEEVKDKL-KQNALALSG 145 (246)
T ss_pred cccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcC-cccChHHHHHHHHHHHHHcCCChhhhHHh-cCCcccCCH
Confidence 753 34668999999998887 699999988653321 00012334456788999999953221111 123458999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|++||+++ .+.+.+|++++|++|+++..|
T Consensus 146 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~G~i~~~g 223 (246)
T PRK14269 146 GQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH-NLSMIMVTHNMQ-QGKRVADYTAFFHLGELIEFG 223 (246)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HHHhhCcEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999875 899999999986 577899999999999999999
Q ss_pred ChhhHH
Q 010509 271 EASGAM 276 (508)
Q Consensus 271 ~~~~~~ 276 (508)
++++..
T Consensus 224 ~~~~~~ 229 (246)
T PRK14269 224 ESKEFF 229 (246)
T ss_pred CHHHHH
Confidence 987653
No 158
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=1.8e-44 Score=348.86 Aligned_cols=209 Identities=25% Similarity=0.418 Sum_probs=180.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++.++ .+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 ~~~~~l~~~~~---------------~~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 65 (213)
T TIGR01277 1 LALDKVRYEYE---------------HLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGL 65 (213)
T ss_pred CeEEeeeEEeC---------------CcceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccC
Confidence 46789988764 13579999999999999999999999999999999999999999999998743
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++|++.+++.+|+.||+.+...... . ...+.+++++++++.+||.+..++.+ +.||||||||+
T Consensus 66 ~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~--~-~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 137 (213)
T TIGR01277 66 APYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL--K-LNAEQQEKVVDAAQQVGIADYLDRLP-----EQLSGGQRQRV 137 (213)
T ss_pred ChhccceEEEeccCccCCCCcHHHHHHhHhhccC--C-ccHHHHHHHHHHHHHcCcHHHhhCCc-----ccCCHHHHHHH
Confidence 345679999999999999999999987543211 1 12223456788999999988777665 48999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+++|++++|++|+++..|+
T Consensus 138 ~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~-~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 138 ALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLS-DARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999999999999764 899999999986 5678899999999999998875
No 159
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.5e-45 Score=360.57 Aligned_cols=231 Identities=23% Similarity=0.345 Sum_probs=203.9
Q ss_pred eeEEEEeEEEEEeccccc------cCcc-----cccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcc
Q 010509 37 VTLKFEDIVYKIKMKKGF------YGSN-----KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN 105 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~------~~~~-----~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~ 105 (508)
+.++++|+.+-++..... -+.. ++.+...-++|+|++++.||++.|||-||||||||+|+|.++..|++
T Consensus 3 ~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~ 82 (386)
T COG4175 3 VKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTR 82 (386)
T ss_pred ceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCC
Confidence 468999999887643211 0111 12233457899999999999999999999999999999999999999
Q ss_pred cEEEECCEeCCh-------h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc
Q 010509 106 GRITYNGKPFSN-------Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKN 177 (508)
Q Consensus 106 G~I~~~G~~~~~-------~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~ 177 (508)
|+|+++|+++.+ + .++.+++|||+..|+|..||.||..|+...+ +.+++++++++.+.|+.+||+++++
T Consensus 83 G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~---Gv~~~er~~~a~~~l~~VgL~~~~~ 159 (386)
T COG4175 83 GEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQ---GVPKAEREERALEALELVGLEGYAD 159 (386)
T ss_pred ceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeec---CCCHHHHHHHHHHHHHHcCchhhhh
Confidence 999999998843 2 3468999999999999999999999998765 5788999999999999999999998
Q ss_pred cccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhcc
Q 010509 178 SLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFH 256 (508)
Q Consensus 178 ~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D 256 (508)
+++ ++|||||||||.|||||+++|+||++|||+|.|||--+.++.+.|.+|.++ ++|||++|||++ +..++.|
T Consensus 160 ~yp-----~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLd-EAlriG~ 233 (386)
T COG4175 160 KYP-----NELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLD-EALRIGD 233 (386)
T ss_pred cCc-----ccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHHhccc
Confidence 776 599999999999999999999999999999999999999999999999765 899999999997 5779999
Q ss_pred EEEEEeCCeEEEEcChhhHH
Q 010509 257 KVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 257 ~v~lL~~G~iv~~G~~~~~~ 276 (508)
||.+|++|+++-.|+|++++
T Consensus 234 rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 234 RIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred eEEEecCCeEEEeCCHHHHH
Confidence 99999999999999999885
No 160
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-44 Score=357.19 Aligned_cols=217 Identities=23% Similarity=0.412 Sum_probs=185.1
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC--C---cccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG--R---INGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~--~---~~G~I~~~ 111 (508)
..++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++ | ++|+|.++
T Consensus 11 ~~l~i~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~ 77 (259)
T PRK14274 11 EVYQINGMNLWYG-------------QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYN 77 (259)
T ss_pred ceEEEeeEEEEEC-------------CeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEEC
Confidence 3699999999875 3569999999999999999999999999999999999886 3 59999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLIG 181 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg 181 (508)
|+++.. ..++.++|++|++.+++. |++||+.+....+ ...++++..++++++++.+++.+ ..++.
T Consensus 78 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~-- 152 (259)
T PRK14274 78 GSNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIH--GTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQ-- 152 (259)
T ss_pred CEEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhhhhhCC--
Confidence 998741 345679999999988885 9999998764332 11133445567888999999854 23333
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|+|++||+++ .+.+.+||+++|
T Consensus 153 ---~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l 227 (259)
T PRK14274 153 ---ALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE-KYTIVIVTHNMQ-QAARVSDQTAFF 227 (259)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEEcCHH-HHHHhCCEEEEE
Confidence 458999999999999999999999999999999999999999999999975 799999999986 577899999999
Q ss_pred eCCeEEEEcChhhHH
Q 010509 262 SEGYPLYSGEASGAM 276 (508)
Q Consensus 262 ~~G~iv~~G~~~~~~ 276 (508)
++|+++..|+++++.
T Consensus 228 ~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 228 YMGELVECNDTNKMF 242 (259)
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999988763
No 161
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=3.3e-44 Score=352.45 Aligned_cols=215 Identities=29% Similarity=0.462 Sum_probs=188.0
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
|+++|+++.+. + ++|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 1 l~~~~l~~~~~-------------~-~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~ 66 (235)
T cd03299 1 LKVENLSKDWK-------------E-FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNL 66 (235)
T ss_pred CeeEeEEEEeC-------------C-ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcC
Confidence 45788888764 2 37999999999999999999999999999999999999999999999998753
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++|++.+++.+|+.||+.+..... ..+..+..+.+.++++.+||.+..++.+ +.||||||||+
T Consensus 67 ~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 138 (235)
T cd03299 67 PPEKRDISYVPQNYALFPHMTVYKNIAYGLKKR---KVDKKEIERKVLEIAEMLGIDHLLNRKP-----ETLSGGEQQRV 138 (235)
T ss_pred ChhHcCEEEEeecCccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHHhcCc-----ccCCHHHHHHH
Confidence 23568999999999999999999998764332 1234455567788999999988887766 48999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
+||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. .+.+.+|++++|++|+++..|+.++.
T Consensus 139 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 217 (235)
T cd03299 139 AIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFE-EAWALADKVAIMLNGKLIQVGKPEEV 217 (235)
T ss_pred HHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999999765 999999999986 57788999999999999999987765
Q ss_pred H
Q 010509 276 M 276 (508)
Q Consensus 276 ~ 276 (508)
.
T Consensus 218 ~ 218 (235)
T cd03299 218 F 218 (235)
T ss_pred H
Confidence 3
No 162
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-44 Score=354.90 Aligned_cols=220 Identities=20% Similarity=0.358 Sum_probs=185.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC--C---cccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG--R---INGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~--~---~~G~I~~~G 112 (508)
.++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++ | ++|+|.++|
T Consensus 4 ~l~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 4 KVKLEQLNVHFG-------------KNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred EEEEEEEEEEeC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 489999999875 3569999999999999999999999999999999999975 3 689999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
+++.. ..++.++|++|++.+++.+|+.||+.+..... ...+..+..++++++++.+|+.+...... +..++
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 147 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLN--GRVNRSEADEIVESSLKRVALWDEVKDRL-KSNAM 147 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCchhhhHHh-hCCcC
Confidence 98742 34678999999999999999999998764322 11233344567889999999864211111 12345
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.++||++++|++|++
T Consensus 148 ~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~~~~~~d~i~~l~~G~i 225 (252)
T PRK14256 148 ELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE-KYTIIIVTHNMQ-QAARVSDYTAFFYMGDL 225 (252)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCcEEEEECCHH-HHHhhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999976 589999999986 57789999999999999
Q ss_pred EEEcChhhH
Q 010509 267 LYSGEASGA 275 (508)
Q Consensus 267 v~~G~~~~~ 275 (508)
+..|++++.
T Consensus 226 ~~~~~~~~~ 234 (252)
T PRK14256 226 VECGETKKI 234 (252)
T ss_pred EEeCCHHHH
Confidence 999998765
No 163
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-44 Score=392.03 Aligned_cols=219 Identities=21% Similarity=0.338 Sum_probs=191.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC--cccEEEECCEeC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR--INGRITYNGKPF 115 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~--~~G~I~~~G~~~ 115 (508)
+|+++|++++++ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++
T Consensus 5 ~l~~~nl~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTFG-------------GVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEeC-------------CeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 599999999875 35799999999999999999999999999999999999875 899999999987
Q ss_pred Ch-----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 116 SN-----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 116 ~~-----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
.. ..++.++||+|++.+++.+||+||+.+....+.....+.++..++++++++.+|+.+..++.++ +|||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSg 146 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVG-----NLGL 146 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchh-----hCCH
Confidence 43 1246799999999999999999999886532211112334455678999999999888887765 8999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||++ .+..+||++++|++|++++.|
T Consensus 147 Gqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~-~~~~~~d~v~~l~~G~i~~~~ 225 (506)
T PRK13549 147 GQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLN-EVKAISDTICVIRDGRHIGTR 225 (506)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHH-HHHHhcCEEEEEECCEEeeec
Confidence 9999999999999999999999999999999999999999999878999999999986 577889999999999999999
Q ss_pred ChhhH
Q 010509 271 EASGA 275 (508)
Q Consensus 271 ~~~~~ 275 (508)
++++.
T Consensus 226 ~~~~~ 230 (506)
T PRK13549 226 PAAGM 230 (506)
T ss_pred ccccC
Confidence 98764
No 164
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.6e-44 Score=354.56 Aligned_cols=216 Identities=23% Similarity=0.362 Sum_probs=184.9
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~~ 111 (508)
..++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++
T Consensus 3 ~~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~ 69 (251)
T PRK14270 3 IKMESKNLNLWYG-------------EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLD 69 (251)
T ss_pred cEEEEEEeEEEEC-------------CeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEEC
Confidence 3689999999875 35699999999999999999999999999999999998764 79999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLIG 181 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg 181 (508)
|+++.. ..++.++|++|++.+++ +|++||+.+...... .....+..++++++++.+|+.+ ..++.
T Consensus 70 g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 144 (251)
T PRK14270 70 GKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHG--IKDKKELDKIVEWALKKAALWDEVKDDLKKS-- 144 (251)
T ss_pred CEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHcCCchhhhhHhhCC--
Confidence 998742 23567999999999887 899999988654321 1123444567788999998853 33433
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++||+++|
T Consensus 145 ---~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~d~v~~l 219 (251)
T PRK14270 145 ---ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK-EYTIVIVTHNMQ-QASRVSDYTAFF 219 (251)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEEcCHH-HHHHhcCEEEEE
Confidence 458999999999999999999999999999999999999999999999976 589999999986 577889999999
Q ss_pred eCCeEEEEcChhhH
Q 010509 262 SEGYPLYSGEASGA 275 (508)
Q Consensus 262 ~~G~iv~~G~~~~~ 275 (508)
++|++++.|+++++
T Consensus 220 ~~G~i~~~~~~~~~ 233 (251)
T PRK14270 220 LMGDLIEFNKTEKI 233 (251)
T ss_pred ECCeEEEeCCHHHH
Confidence 99999999998876
No 165
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-44 Score=356.63 Aligned_cols=223 Identities=22% Similarity=0.339 Sum_probs=187.8
Q ss_pred CceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEE
Q 010509 35 HPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRIT 109 (508)
Q Consensus 35 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~ 109 (508)
.+..++++|++++++ ++++|+|+|+++++||+++|+|||||||||||++|+|+++ |++|+|.
T Consensus 17 ~~~~l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~ 83 (267)
T PRK14237 17 EEIALSTKDLHVYYG-------------KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQIL 83 (267)
T ss_pred CCeEEEEeeEEEEEC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEE
Confidence 345799999999874 3579999999999999999999999999999999999985 5899999
Q ss_pred ECCEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCC
Q 010509 110 YNGKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGP 183 (508)
Q Consensus 110 ~~G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 183 (508)
++|+++.. ..++.++|++|++.+++ .||+||+.++.... ....+++..+++.++++.++|.+..+... +.
T Consensus 84 ~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~i~~~~-~~ 159 (267)
T PRK14237 84 YRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERA--GVKDKKVLDEIVETSLKQAALWDQVKDDL-HK 159 (267)
T ss_pred ECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhc--CCCCHHHHHHHHHHHHHHcCCCchhhhhh-cC
Confidence 99998742 24667999999998887 59999998865321 11234445567888999999964322222 23
Q ss_pred CCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 184 LTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
.+++||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.++||++++|++
T Consensus 160 ~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~i~~l~~ 237 (267)
T PRK14237 160 SALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK-NYTIIIVTHNMQ-QAARASDYTAFFYL 237 (267)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhcCEEEEEEC
Confidence 4569999999999999999999999999999999999999999999999964 799999999986 57789999999999
Q ss_pred CeEEEEcChhhHH
Q 010509 264 GYPLYSGEASGAM 276 (508)
Q Consensus 264 G~iv~~G~~~~~~ 276 (508)
|+++..|++++..
T Consensus 238 G~i~~~g~~~~~~ 250 (267)
T PRK14237 238 GDLIEYDKTRNIF 250 (267)
T ss_pred CEEEEeCCHHHHh
Confidence 9999999988763
No 166
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=2.7e-44 Score=360.59 Aligned_cols=218 Identities=24% Similarity=0.392 Sum_probs=185.8
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc--------ccEEEE
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI--------NGRITY 110 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~--------~G~I~~ 110 (508)
|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|+ +|+|.+
T Consensus 2 l~~~nl~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 2 LTADHLHVARR-------------HRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred eEEEEEEEEEC-------------CEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 78999999874 357999999999999999999999999999999999999887 999999
Q ss_pred CCEeCCh----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 111 NGKPFSN----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 111 ~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
+|+++.. ..++.++|++|++.+++.+|++||+.+....... .....++..++++++++.+||.+..++.+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~----- 143 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDV----- 143 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCc-----
Confidence 9998742 3455789999998766679999999875321100 01111234466889999999988777655
Q ss_pred CccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhc
Q 010509 186 RGVSGGERKRVSIGQEIL---------INPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMF 255 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~---------~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~ 255 (508)
..|||||||||+||++|+ .+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+++
T Consensus 144 ~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~-~~~~~~ 222 (272)
T PRK13547 144 TTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPN-LAARHA 222 (272)
T ss_pred ccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhC
Confidence 489999999999999999 599999999999999999999999999999875 899999999986 577889
Q ss_pred cEEEEEeCCeEEEEcChhhH
Q 010509 256 HKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 256 D~v~lL~~G~iv~~G~~~~~ 275 (508)
|++++|++|++++.|+++++
T Consensus 223 d~i~~l~~G~i~~~g~~~~~ 242 (272)
T PRK13547 223 DRIAMLADGAIVAHGAPADV 242 (272)
T ss_pred CEEEEEECCeEEEecCHHHH
Confidence 99999999999999998765
No 167
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-44 Score=358.55 Aligned_cols=217 Identities=24% Similarity=0.421 Sum_probs=184.0
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEE
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITY 110 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~ 110 (508)
+.+|+++|++++++ ++.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.+
T Consensus 11 ~~~l~i~nl~~~~~-------------~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~ 77 (269)
T PRK14259 11 NIIISLQNVTISYG-------------TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLF 77 (269)
T ss_pred CceEEEEeEEEEEC-------------CEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEE
Confidence 45799999999875 3569999999999999999999999999999999999976 68999999
Q ss_pred CCEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccc
Q 010509 111 NGKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLI 180 (508)
Q Consensus 111 ~G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v 180 (508)
+|+++.. ..++.++|++|++.+++. ||+||+.+.+..+ .... +..++++++++.+++.. ..++.
T Consensus 78 ~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~---~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~- 151 (269)
T PRK14259 78 DGTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARIN---GYTG-DMDELVERSLRKAAVWDECKDKLNES- 151 (269)
T ss_pred CCEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhc---CCcH-HHHHHHHHHHHHhCCcchhhhhhCCC-
Confidence 9998631 345679999999998884 9999998876432 1122 23456778889888743 33433
Q ss_pred CCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEE
Q 010509 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLL 260 (508)
Q Consensus 181 g~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~l 260 (508)
+++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++. .+..+||++++
T Consensus 152 ----~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~~tiiivtH~~~-~~~~~~d~i~~ 225 (269)
T PRK14259 152 ----GYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK-NFTIVIVTHNMQ-QAVRVSDMTAF 225 (269)
T ss_pred ----cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCEEEE
Confidence 458999999999999999999999999999999999999999999999965 799999999986 57899999999
Q ss_pred EeC-----------CeEEEEcChhhHHH
Q 010509 261 LSE-----------GYPLYSGEASGAMN 277 (508)
Q Consensus 261 L~~-----------G~iv~~G~~~~~~~ 277 (508)
|++ |++++.|+++++..
T Consensus 226 l~~~~~~~~~~g~~g~~~~~~~~~~~~~ 253 (269)
T PRK14259 226 FNAEEVEGGSGGKVGYLVEFNETKKIFN 253 (269)
T ss_pred EeccccccccccccceEEEeCCHHHHHh
Confidence 996 67899999887753
No 168
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=2.4e-44 Score=390.18 Aligned_cols=219 Identities=25% Similarity=0.390 Sum_probs=191.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++ ++++|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 4 ~i~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~ 70 (501)
T PRK10762 4 LLQLKGIDKAFP-------------GVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTF 70 (501)
T ss_pred eEEEeeeEEEeC-------------CeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence 589999999875 3579999999999999999999999999999999999999999999999998742
Q ss_pred ----h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 118 ----Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQL-PNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ----~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
. .++.++|++|++.+++.+||+||+.++...+. ....+.++.+++++++++.+||.+..++.++ +||||
T Consensus 71 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG 145 (501)
T PRK10762 71 NGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVG-----ELSIG 145 (501)
T ss_pred CCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCHH
Confidence 1 24579999999999999999999988643211 0112334455678899999999988877765 89999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
|||||+||+||+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||++ .+..+||++++|++|+++..|+
T Consensus 146 ~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~-~~~~~~d~i~~l~~G~i~~~~~ 224 (501)
T PRK10762 146 EQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLK-EIFEICDDVTVFRDGQFIAERE 224 (501)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCCEEEEecC
Confidence 999999999999999999999999999999999999999999877999999999986 5778999999999999999998
Q ss_pred hhhH
Q 010509 272 ASGA 275 (508)
Q Consensus 272 ~~~~ 275 (508)
+++.
T Consensus 225 ~~~~ 228 (501)
T PRK10762 225 VADL 228 (501)
T ss_pred cCcC
Confidence 8754
No 169
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-44 Score=390.90 Aligned_cols=219 Identities=23% Similarity=0.343 Sum_probs=191.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++++ ++.+|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++..
T Consensus 5 ~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~ 71 (510)
T PRK09700 5 YISMAGIGKSFG-------------PVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNK 71 (510)
T ss_pred eEEEeeeEEEcC-------------CeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCC
Confidence 699999999875 3579999999999999999999999999999999999999999999999998743
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhc--CCC--CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCcc
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQ--LPN--SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGV 188 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~--~~~--~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 188 (508)
..++.++||+|++.+++.+||+||+.+..... ... ..+.++.+++++++++.+||.+..++.++ +|
T Consensus 72 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~L 146 (510)
T PRK09700 72 LDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVA-----NL 146 (510)
T ss_pred CCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchh-----hC
Confidence 12357999999999999999999998753210 000 01234455678999999999988887765 89
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ .+..+||++++|++|++++
T Consensus 147 SgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~-~~~~~~d~v~~l~~G~i~~ 225 (510)
T PRK09700 147 SISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLA-EIRRICDRYTVMKDGSSVC 225 (510)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEee
Confidence 999999999999999999999999999999999999999999999888999999999986 5778999999999999999
Q ss_pred EcChhhH
Q 010509 269 SGEASGA 275 (508)
Q Consensus 269 ~G~~~~~ 275 (508)
.|++++.
T Consensus 226 ~g~~~~~ 232 (510)
T PRK09700 226 SGMVSDV 232 (510)
T ss_pred ecchhhC
Confidence 9998764
No 170
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.9e-44 Score=352.83 Aligned_cols=218 Identities=26% Similarity=0.395 Sum_probs=184.6
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc-----ccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI-----NGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~-----~G~I~~~ 111 (508)
+.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+|+|+|+++|. +|+|.++
T Consensus 3 ~~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~ 69 (252)
T PRK14272 3 LLLSAQDVNIYYG-------------DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLD 69 (252)
T ss_pred EEEEEeeeEEEEC-------------CEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEEC
Confidence 4689999999875 357999999999999999999999999999999999998653 8999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS----ECKNSLIG 181 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg 181 (508)
|+++.. ..++.++|++|++.+++.+|+.||+.+..... ....+++..++++++++.+++. +..++.
T Consensus 70 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 145 (252)
T PRK14272 70 GQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLA--GIRDRDHLMEVAERSLRGAALWDEVKDRLKTP-- 145 (252)
T ss_pred CEEcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCcchhhhhhhcCC--
Confidence 998742 34567999999999999999999998765322 1112334456677778888764 333444
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+...+|++++|
T Consensus 146 ---~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~i~~l 220 (252)
T PRK14272 146 ---ATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK-VTTIIIVTHNMH-QAARVSDTTSFF 220 (252)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 458999999999999999999999999999999999999999999999975 699999999986 577889999999
Q ss_pred eCCeEEEEcChhhHH
Q 010509 262 SEGYPLYSGEASGAM 276 (508)
Q Consensus 262 ~~G~iv~~G~~~~~~ 276 (508)
++|++++.|++++..
T Consensus 221 ~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 221 LVGDLVEHGPTDQLF 235 (252)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
No 171
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=6e-44 Score=355.22 Aligned_cols=218 Identities=24% Similarity=0.396 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe---
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP--- 114 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~--- 114 (508)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|++
T Consensus 6 ~l~~~~l~~~~~-------------~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 72 (258)
T PRK11701 6 LLSVRGLTKLYG-------------PRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQL 72 (258)
T ss_pred eEEEeeeEEEcC-------------CceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccc
Confidence 599999999875 3569999999999999999999999999999999999999999999999987
Q ss_pred --CCh----h----ccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccC
Q 010509 115 --FSN----Q----MTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIG 181 (508)
Q Consensus 115 --~~~----~----~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg 181 (508)
+.. . .++.++|++|++ .+++.+|+.||+.+..... . .....+.++++.++++.+++.+ ..++.+
T Consensus 73 ~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~- 149 (258)
T PRK11701 73 RDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAV-G-ARHYGDIRATAGDWLERVEIDAARIDDLP- 149 (258)
T ss_pred cccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHh-c-cCcHHHHHHHHHHHHHHcCCChhHHhCCC-
Confidence 532 1 245699999997 3677889999997643221 1 1122344567889999999974 556555
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLL 260 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~l 260 (508)
..||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. .+.+.+|++++
T Consensus 150 ----~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~-~~~~~~d~i~~ 224 (258)
T PRK11701 150 ----TTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLAHRLLV 224 (258)
T ss_pred ----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHH-HHHHhcCEEEE
Confidence 489999999999999999999999999999999999999999999999765 899999999986 57778999999
Q ss_pred EeCCeEEEEcChhhHH
Q 010509 261 LSEGYPLYSGEASGAM 276 (508)
Q Consensus 261 L~~G~iv~~G~~~~~~ 276 (508)
|++|++++.|++++..
T Consensus 225 l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 225 MKQGRVVESGLTDQVL 240 (258)
T ss_pred EECCEEEEeCCHHHHh
Confidence 9999999999987653
No 172
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-44 Score=356.34 Aligned_cols=216 Identities=22% Similarity=0.368 Sum_probs=182.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~G 112 (508)
.++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|
T Consensus 21 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 87 (268)
T PRK14248 21 ILEVKDLSIYYG-------------EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEG 87 (268)
T ss_pred eEEEEEEEEEeC-------------CceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECC
Confidence 699999999875 3579999999999999999999999999999999999753 6899999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLIGG 182 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~ 182 (508)
+++.. ..++.++|++|++.+++. |++||+.+..... ........++.++++++.+++.+ ..++.
T Consensus 88 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 161 (268)
T PRK14248 88 LNILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYA--GERRKSVLDEIVEESLTKAALWDEVKDRLHSS--- 161 (268)
T ss_pred EEcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCCcchHHHHhcC---
Confidence 98742 245679999999988885 9999998764322 11122233456788899998852 33444
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+..||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++||+++|+
T Consensus 162 --~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~~~~~~d~v~~l~ 237 (268)
T PRK14248 162 --ALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE-EYSIIIVTHNMQ-QALRVSDRTAFFL 237 (268)
T ss_pred --cccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc-CCEEEEEEeCHH-HHHHhCCEEEEEE
Confidence 458999999999999999999999999999999999999999999999975 689999999986 5778999999999
Q ss_pred CCeEEEEcChhhHH
Q 010509 263 EGYPLYSGEASGAM 276 (508)
Q Consensus 263 ~G~iv~~G~~~~~~ 276 (508)
+|++++.|++++..
T Consensus 238 ~G~i~~~~~~~~~~ 251 (268)
T PRK14248 238 NGDLVEYDQTEQIF 251 (268)
T ss_pred CCEEEEeCCHHHHH
Confidence 99999999987653
No 173
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.1e-44 Score=352.12 Aligned_cols=221 Identities=24% Similarity=0.410 Sum_probs=185.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~~G 112 (508)
+|+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g 69 (250)
T PRK14262 3 IIEIENFSAYYG-------------EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKG 69 (250)
T ss_pred eEEEEeeEEEeC-------------CceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 589999999874 35699999999999999999999999999999999999863 899999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
+++.. ..++.++|++|++.+++ .|++||+.+...... ...++..++.++++++.+|+.+..+... +..++
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 145 (250)
T PRK14262 70 QDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHG--VKSKHKLDRIVEESLKKAALWDEVKSEL-NKPGT 145 (250)
T ss_pred EEcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHcCCCchhHHHH-hCChh
Confidence 98742 24568999999999888 899999988654321 1123344556788999999864211111 23345
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+..++|++++|++|++
T Consensus 146 ~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tili~sH~~~-~~~~~~d~i~~l~~G~i 223 (250)
T PRK14262 146 RLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE-NYTIVIVTHNIG-QAIRIADYIAFMYRGEL 223 (250)
T ss_pred hcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc-CcEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999975 789999999986 47788999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|++++..+
T Consensus 224 ~~~g~~~~~~~ 234 (250)
T PRK14262 224 IEYGPTREIVE 234 (250)
T ss_pred EEecCHHHHHh
Confidence 99999887643
No 174
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9e-44 Score=352.43 Aligned_cols=215 Identities=25% Similarity=0.388 Sum_probs=182.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--CC---cccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GR---INGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--~~---~~G~I~~~G 112 (508)
.++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|+. .| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g 71 (252)
T PRK14239 5 ILQVSDLSVYYN-------------KKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNG 71 (252)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECC
Confidence 589999999875 356999999999999999999999999999999999985 35 599999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLIGG 182 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~ 182 (508)
+++.. ..++.++|++|++.+++ +||+||+.+....+ + ....+...++++++++.+++.+ ..++.
T Consensus 72 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 145 (252)
T PRK14239 72 HNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLK-G-IKDKQVLDEAVEKSLKGASIWDEVKDRLHDS--- 145 (252)
T ss_pred EECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHc-C-CCcHHHHHHHHHHHHHHcCCchhHHHHHhcC---
Confidence 98731 24567999999998887 89999998865432 1 1123334566788999998853 23333
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+++||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+||+++|+
T Consensus 146 --~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sH~~~-~~~~~~d~i~~l~ 221 (252)
T PRK14239 146 --ALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD-DYTMLLVTRSMQ-QASRISDRTGFFL 221 (252)
T ss_pred --cccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh-CCeEEEEECCHH-HHHHhCCEEEEEE
Confidence 458999999999999999999999999999999999999999999999965 689999999986 5778899999999
Q ss_pred CCeEEEEcChhhH
Q 010509 263 EGYPLYSGEASGA 275 (508)
Q Consensus 263 ~G~iv~~G~~~~~ 275 (508)
+|++++.|++++.
T Consensus 222 ~G~i~~~g~~~~~ 234 (252)
T PRK14239 222 DGDLIEYNDTKQM 234 (252)
T ss_pred CCEEEEeCCHHHH
Confidence 9999999998876
No 175
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.9e-44 Score=351.85 Aligned_cols=215 Identities=23% Similarity=0.378 Sum_probs=183.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC--C---cccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG--R---INGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~--~---~~G~I~~~G 112 (508)
.|+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+ | ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 69 (250)
T PRK14240 3 KISVKDLDLFYG-------------DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDG 69 (250)
T ss_pred eEEEEEEEEEEC-------------CceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 488999999875 3569999999999999999999999999999999999875 3 699999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLIGG 182 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~ 182 (508)
+++.. ..++.++|++|++.+++ +|++||+.+....+. ..+.++.+++++++++.+++.+ ..++.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~--- 143 (250)
T PRK14240 70 QDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHG--IKDKKKLDEIVEKSLKGAALWDEVKDRLKKS--- 143 (250)
T ss_pred EEccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhHHHHhcC---
Confidence 98742 34667999999998888 899999998654321 1123445567888899998753 33443
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+++||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+.+|++++|+
T Consensus 144 --~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~-~~~~~~d~v~~l~ 219 (250)
T PRK14240 144 --ALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK-DYTIVIVTHNMQ-QASRISDKTAFFL 219 (250)
T ss_pred --CCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEEeCHH-HHHhhCCEEEEEE
Confidence 458999999999999999999999999999999999999999999999965 799999999986 5778899999999
Q ss_pred CCeEEEEcChhhH
Q 010509 263 EGYPLYSGEASGA 275 (508)
Q Consensus 263 ~G~iv~~G~~~~~ 275 (508)
+|+++..|++++.
T Consensus 220 ~G~i~~~~~~~~~ 232 (250)
T PRK14240 220 NGEIVEFGDTVDL 232 (250)
T ss_pred CCEEEEeCCHHHH
Confidence 9999999988765
No 176
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.8e-44 Score=352.90 Aligned_cols=220 Identities=22% Similarity=0.342 Sum_probs=182.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~G 112 (508)
.-+++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++|
T Consensus 5 ~~~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 71 (251)
T PRK14244 5 HASVKNLNLWYG-------------SKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDG 71 (251)
T ss_pred EEEeeeEEEEEC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECC
Confidence 356789988764 3579999999999999999999999999999999999975 4799999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
+++.. ..++.++|++|++.+++. |++||+.+....+. .....++.++.++++++.+||.+...+.. +..++
T Consensus 72 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 148 (251)
T PRK14244 72 IDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHG-LAKNKKKLDEIVEKSLTSVGLWEELGDRL-KDSAF 148 (251)
T ss_pred EehHhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHcCCCchhhhHh-hcChh
Confidence 98632 246689999999988886 99999987643321 11123344566788999999975321111 12345
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ |+|||++||+++ .+.+.+|++++|++|++
T Consensus 149 ~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~~G~i 226 (251)
T PRK14244 149 ELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKK-NFTIIVVTHSMK-QAKKVSDRVAFFQSGRI 226 (251)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHhhcCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999964 899999999986 57788999999999999
Q ss_pred EEEcChhhH
Q 010509 267 LYSGEASGA 275 (508)
Q Consensus 267 v~~G~~~~~ 275 (508)
++.|+++++
T Consensus 227 ~~~~~~~~~ 235 (251)
T PRK14244 227 VEYNTTQEI 235 (251)
T ss_pred EEeCCHHHH
Confidence 999988765
No 177
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-44 Score=345.62 Aligned_cols=190 Identities=29% Similarity=0.470 Sum_probs=168.4
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--------hccccEEEEecCCCCCCCCCHHH
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--------QMTRNTGFVTQEDVLSPYLTVTE 140 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--------~~~~~i~yv~Q~~~l~~~lTv~E 140 (508)
|+|+++++ |+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..++.++|++|++.+++.+|++|
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~ 94 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHLNVRE 94 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCccCCCCCHHH
Confidence 99999999 9999999999999999999999999999999999988641 23567999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010509 141 TMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220 (508)
Q Consensus 141 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~ 220 (508)
|+.+..... .....+++++++++.+|+.+..++.+ ++||||||||++||++|+.+|++++|||||+|||+
T Consensus 95 ~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~ 164 (214)
T cd03297 95 NLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYP-----AQLSGGEKQRVALARALAAQPELLLLDEPFSALDR 164 (214)
T ss_pred HHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCc-----ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence 998764321 23334567889999999987777655 48999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 221 TIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 221 ~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
.++..+.+.|++++++ |+|||++||+++ .+.+.+|++++|++|+++..|
T Consensus 165 ~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 165 ALRLQLLPELKQIKKNLNIPVIFVTHDLS-EAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHHHHHHHHHHHcCcEEEEEecCHH-HHHHhcCEEEEEECCEEEecC
Confidence 9999999999999875 899999999986 477889999999999998765
No 178
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=6.2e-44 Score=387.74 Aligned_cols=212 Identities=25% Similarity=0.387 Sum_probs=189.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|++++++ ++.+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 11 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 77 (510)
T PRK15439 11 LLCARSISKQYS-------------GVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCAR 77 (510)
T ss_pred eEEEEeEEEEeC-------------CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCC
Confidence 699999999875 3569999999999999999999999999999999999999999999999998743
Q ss_pred ----h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 ----Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 ----~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
. .++.++|++|++.+++.+||+||+.+... ...+.+++++++++.+||.+..++.++ +|||||
T Consensus 78 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~ 145 (510)
T PRK15439 78 LTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLP-------KRQASMQKMKQLLAALGCQLDLDSSAG-----SLEVAD 145 (510)
T ss_pred CCHHHHHhCCEEEEeccCccCCCCcHHHHhhcccc-------cchHHHHHHHHHHHHcCCCccccCChh-----hCCHHH
Confidence 1 23469999999999999999999987531 112344678899999999988877765 899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
||||+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++|||++ .+.++||++++|++|++++.|++
T Consensus 146 ~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~ 224 (510)
T PRK15439 146 RQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLP-EIRQLADRISVMRDGTIALSGKT 224 (510)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEecCh
Confidence 99999999999999999999999999999999999999999888999999999986 57789999999999999999998
Q ss_pred hhH
Q 010509 273 SGA 275 (508)
Q Consensus 273 ~~~ 275 (508)
++.
T Consensus 225 ~~~ 227 (510)
T PRK15439 225 ADL 227 (510)
T ss_pred HHc
Confidence 765
No 179
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=3.8e-44 Score=350.95 Aligned_cols=201 Identities=28% Similarity=0.491 Sum_probs=174.7
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHH
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTA 146 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~ 146 (508)
|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++... ....+|++|++.+++.+||.||+.+..
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~v~q~~~l~~~~tv~e~l~~~~ 79 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEP-GPDRMVVFQNYSLLPWLTVRENIALAV 79 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCC-ChhheEEecCcccCCCCCHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999999987532 123589999999999999999998864
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 010509 147 LLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQI 226 (508)
Q Consensus 147 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i 226 (508)
....+ ...+++.+++++++++.+||.+..++.++ +||||||||++||++|+.+|++|+|||||+|||+.++..+
T Consensus 80 ~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l 153 (230)
T TIGR01184 80 DRVLP-DLSKSERRAIVEEHIALVGLTEAADKRPG-----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNL 153 (230)
T ss_pred Hhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHH
Confidence 21111 23344556678899999999887777664 8999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 227 LSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 227 ~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
.+.|++++++ |+|||++||+++ .+.+++|++++|++|+++..|+..++
T Consensus 154 ~~~l~~~~~~~~~tii~~sH~~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 154 QEELMQIWEEHRVTVLMVTHDVD-EALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCcEecccCceec
Confidence 9999999764 899999999986 57789999999999999998876543
No 180
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-43 Score=350.29 Aligned_cols=215 Identities=23% Similarity=0.403 Sum_probs=182.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~G 112 (508)
.++++|++++++ .+++|+|+|+++++||+++|+||||||||||+++|+|+.+ +++|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g 70 (251)
T PRK14251 4 IISAKDVHLSYG-------------NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEG 70 (251)
T ss_pred eEEEEeeEEEEC-------------CeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECC
Confidence 589999999875 3569999999999999999999999999999999999986 4799999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLIGG 182 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~ 182 (508)
+++.. ..++.++|++|++.+++ .||+||+.+..... ....++...++++++++.+++.. ..++.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~--- 144 (251)
T PRK14251 71 QNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIA--GVKDKELIDQRVEESLKQAAIWKETKDNLDRN--- 144 (251)
T ss_pred EEcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCcchHHHhccC---
Confidence 98632 24567999999998886 79999998764322 11122334456788999999852 23433
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+++|++++|+
T Consensus 145 --~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiiiisH~~~-~~~~~~d~i~~l~ 220 (251)
T PRK14251 145 --AQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH-QYTFIMVTHNLQ-QAGRISDQTAFLM 220 (251)
T ss_pred --hhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc-CCeEEEEECCHH-HHHhhcCEEEEEE
Confidence 458999999999999999999999999999999999999999999999965 699999999986 5778899999999
Q ss_pred CCeEEEEcChhhH
Q 010509 263 EGYPLYSGEASGA 275 (508)
Q Consensus 263 ~G~iv~~G~~~~~ 275 (508)
+|+++..|++++.
T Consensus 221 ~G~i~~~~~~~~~ 233 (251)
T PRK14251 221 NGDLIEAGPTEEM 233 (251)
T ss_pred CCEEEEeCCHHHH
Confidence 9999999998765
No 181
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=1.7e-43 Score=351.23 Aligned_cols=215 Identities=22% Similarity=0.347 Sum_probs=182.9
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC----cccEEEECC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR----INGRITYNG 112 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~----~~G~I~~~G 112 (508)
..|+++|++++++ +.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 3 ~~l~~~~l~~~~~--------------~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g 68 (254)
T PRK10418 3 QQIELRNIALQAA--------------QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDG 68 (254)
T ss_pred cEEEEeCeEEEec--------------cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECC
Confidence 4689999999862 3589999999999999999999999999999999999988 999999999
Q ss_pred EeCCh-h-ccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc---ccccccCCCCC
Q 010509 113 KPFSN-Q-MTRNTGFVTQEDV--LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE---CKNSLIGGPLT 185 (508)
Q Consensus 113 ~~~~~-~-~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~vg~~~~ 185 (508)
+++.. . .++.++|++|++. +.+.+|+.+++.+.+... .... ..++++++++.+||.+ ..++.+
T Consensus 69 ~~i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~----- 138 (254)
T PRK10418 69 KPVAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL---GKPA--DDATLTAALEAVGLENAARVLKLYP----- 138 (254)
T ss_pred eeccccccccceEEEEecCCccccCccccHHHHHHHHHHHc---CCCh--HHHHHHHHHHHcCCCChhhhhhcCC-----
Confidence 98753 2 2357999999974 556789999987654321 1112 2256889999999976 345444
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
++||||||||++||+||+.+|++|+|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|++++|++|
T Consensus 139 ~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~-~~~~~~d~v~~l~~G 217 (254)
T PRK10418 139 FEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMG-VVARLADDVAVMSHG 217 (254)
T ss_pred cccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH-HHHHhCCEEEEEECC
Confidence 589999999999999999999999999999999999999999999999764 899999999986 467889999999999
Q ss_pred eEEEEcChhhHH
Q 010509 265 YPLYSGEASGAM 276 (508)
Q Consensus 265 ~iv~~G~~~~~~ 276 (508)
+++..|++++..
T Consensus 218 ~i~~~~~~~~~~ 229 (254)
T PRK10418 218 RIVEQGDVETLF 229 (254)
T ss_pred EEEEecCHHHHh
Confidence 999999987763
No 182
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=2.5e-43 Score=349.24 Aligned_cols=220 Identities=25% Similarity=0.376 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC--CCCcccEEEECCEeC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR--LGRINGRITYNGKPF 115 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~--~~~~~G~I~~~G~~~ 115 (508)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|+ .+|++|+|.++|+++
T Consensus 7 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~ 73 (252)
T CHL00131 7 ILEIKNLHASVN-------------ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESI 73 (252)
T ss_pred eEEEEeEEEEeC-------------CEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEc
Confidence 699999999874 34699999999999999999999999999999999998 478999999999987
Q ss_pred Ch----hccc-cEEEEecCCCCCCCCCHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 010509 116 SN----QMTR-NTGFVTQEDVLSPYLTVTETMVFTALLQLP----NSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLT 185 (508)
Q Consensus 116 ~~----~~~~-~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~ 185 (508)
.. ..++ .++|++|++.+++.+|+.|++.+....... ......+..++++++++.+|+. +..++.++
T Consensus 74 ~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 149 (252)
T CHL00131 74 LDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN---- 149 (252)
T ss_pred ccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc----
Confidence 43 1222 488999999999999999999875432110 0112223446778899999997 35555543
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhh-ccEEEEEeCC
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYM-FHKVLLLSEG 264 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~-~D~v~lL~~G 264 (508)
.+|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++. +... +|++++|++|
T Consensus 150 ~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~-~~~~~~d~i~~l~~G 228 (252)
T CHL00131 150 EGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRL-LDYIKPDYVHVMQNG 228 (252)
T ss_pred cCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HHhhhCCEEEEEeCC
Confidence 2599999999999999999999999999999999999999999999998779999999999864 5555 8999999999
Q ss_pred eEEEEcChhhH
Q 010509 265 YPLYSGEASGA 275 (508)
Q Consensus 265 ~iv~~G~~~~~ 275 (508)
++++.|+++.+
T Consensus 229 ~i~~~~~~~~~ 239 (252)
T CHL00131 229 KIIKTGDAELA 239 (252)
T ss_pred EEEEecChhhh
Confidence 99999998843
No 183
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=2.8e-44 Score=352.86 Aligned_cols=214 Identities=27% Similarity=0.483 Sum_probs=173.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++.++. ..+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~ 69 (237)
T cd03252 1 ITFEHVRFRYKP-----------DGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALA 69 (237)
T ss_pred CEEEEEEEecCC-----------CCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhc
Confidence 467899988641 12569999999999999999999999999999999999999999999999998642
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCCcccccccCCCCCCc
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI-----KCAEAVMTEL--GLSECKNSLIGGPLTRG 187 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~ 187 (508)
..++.++|++|++.+++ .||.||+.+... ........ ...+++++.+ ++.+..++. +++
T Consensus 70 ~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-----~~~ 138 (237)
T cd03252 70 DPAWLRRQVGVVLQENVLFN-RSIRDNIALADP-----GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQ-----GAG 138 (237)
T ss_pred CHHHHhhcEEEEcCCchhcc-chHHHHhhccCC-----CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcC-----CCc
Confidence 34667999999998875 699999976431 11111111 1123344444 444444433 458
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||+++. + ..+|++++|++|+++
T Consensus 139 LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sH~~~~-~-~~~d~v~~l~~G~i~ 215 (237)
T cd03252 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICA-GRTVIIIAHRLST-V-KNADRIIVMEKGRIV 215 (237)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-H-HhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999974 8999999999974 5 459999999999999
Q ss_pred EEcChhhHHH
Q 010509 268 YSGEASGAMN 277 (508)
Q Consensus 268 ~~G~~~~~~~ 277 (508)
+.|++++..+
T Consensus 216 ~~~~~~~~~~ 225 (237)
T cd03252 216 EQGSHDELLA 225 (237)
T ss_pred EEcCHHHHHh
Confidence 9999877643
No 184
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-43 Score=349.53 Aligned_cols=219 Identities=24% Similarity=0.370 Sum_probs=183.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~~G 112 (508)
+++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+| ++|+|.++|
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 69 (249)
T PRK14253 3 KFNIENLDLFYG-------------ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDG 69 (249)
T ss_pred eEEEeccEEEEC-------------CeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECC
Confidence 588999999875 35699999999999999999999999999999999999875 599999999
Q ss_pred EeCCh-----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCc
Q 010509 113 KPFSN-----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRG 187 (508)
Q Consensus 113 ~~~~~-----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 187 (508)
.++.. ..++.++|++|++.+++ .||.||+.+..... ...+++...+++.++++.+++.+...... +..+.+
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~ 145 (249)
T PRK14253 70 EDIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQ--GIKDKKVLDEVVERSLRGAALWDEVKDRL-KSHAFG 145 (249)
T ss_pred EEcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhc--CCCchHHHHHHHHHHHHHcCCchhhhHHh-hcCccc
Confidence 88731 34667999999999887 89999998764322 11123344566788899888854221111 123458
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.+|++++|++|+++
T Consensus 146 LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~~~d~i~~l~~G~i~ 223 (249)
T PRK14253 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK-NYTIVIVTHSMQ-QARRISDRTAFFLMGELV 223 (249)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEecCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999976 589999999986 577899999999999999
Q ss_pred EEcChhhH
Q 010509 268 YSGEASGA 275 (508)
Q Consensus 268 ~~G~~~~~ 275 (508)
..|++++.
T Consensus 224 ~~g~~~~~ 231 (249)
T PRK14253 224 EHDDTQVI 231 (249)
T ss_pred EeCCHHHH
Confidence 99988765
No 185
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-43 Score=340.57 Aligned_cols=193 Identities=40% Similarity=0.645 Sum_probs=166.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC---CcccEEEECCEe
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG---RINGRITYNGKP 114 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~---~~~G~I~~~G~~ 114 (508)
.+.|+|++|.++.. .+++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++|++
T Consensus 3 ~~~~~~~~~~~~~~---------~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 3 TLSWRNISFTTGKG---------RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred eEEEEccEEEeccC---------CCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 58999999998732 135679999999999999999999999999999999999987 899999999998
Q ss_pred CCh---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 115 FSN---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 115 ~~~---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
+.. ..++.++|++|++.+++.+||+||+.+..... .++. +..||||
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~-----~~~LS~G 122 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEF-----VRGISGG 122 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccc-----hhhCCHH
Confidence 753 35668999999999999999999998753210 2233 3589999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ +.|+|+++|+..+.+.+.+|++++|++|++++.|
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999765 6777777666545678899999999999998765
No 186
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=8.6e-44 Score=341.85 Aligned_cols=197 Identities=30% Similarity=0.475 Sum_probs=171.4
Q ss_pred EeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC---h-
Q 010509 42 EDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS---N- 117 (508)
Q Consensus 42 ~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~---~- 117 (508)
+|+++.++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .
T Consensus 2 ~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~ 68 (206)
T TIGR03608 2 KNISKKFG-------------DKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSK 68 (206)
T ss_pred cceEEEEC-------------CEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchh
Confidence 57777654 357999999999999999999999999999999999999999999999999853 1
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
..++.++|++|++.+++.+|++||+.+..... ...+.+..++++++++.+||.+..++.+. +||||||
T Consensus 69 ~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~lS~G~~ 140 (206)
T TIGR03608 69 KASKFRREKLGYLFQNFALIENETVEENLDLGLKYK---KLSKKEKREKKKEALEKVGLNLKLKQKIY-----ELSGGEQ 140 (206)
T ss_pred hHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCchhhhcCChh-----hCCHHHH
Confidence 23568999999999999999999999865432 22344556678999999999887777664 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++. .. ..+|++++|
T Consensus 141 qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~i~~l 206 (206)
T TIGR03608 141 QRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPE-VA-KQADRVIEL 206 (206)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-hhcCEEEeC
Confidence 9999999999999999999999999999999999999999877999999999986 34 679999875
No 187
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-43 Score=352.74 Aligned_cols=220 Identities=26% Similarity=0.381 Sum_probs=184.7
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~ 111 (508)
..++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.++
T Consensus 24 ~~l~~~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~ 90 (272)
T PRK14236 24 TALEVRNLNLFYG-------------DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLD 90 (272)
T ss_pred cEEEEEEEEEEEC-------------CeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEEC
Confidence 3699999999875 3569999999999999999999999999999999999976 489999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
|+++.. ..++.++|++|++.+++. |++||+.+..... ....+++.+++++++++.+++.+...+.. +..+
T Consensus 91 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~ 166 (272)
T PRK14236 91 GQNIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQ--GINNRRVLDEAVERSLRGAALWDEVKDRL-HENA 166 (272)
T ss_pred CEECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCChhHHHHh-hCCc
Confidence 998742 346789999999998886 9999998765432 11123334466888999999864211111 1234
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
++||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.+|++++|++|+
T Consensus 167 ~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tiiivtH~~~-~~~~~~d~i~~l~~G~ 244 (272)
T PRK14236 167 FGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS-KYTIVIVTHNMQ-QAARVSDYTAFMYMGK 244 (272)
T ss_pred ccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCeEEEEeCCHH-HHHhhCCEEEEEECCE
Confidence 58999999999999999999999999999999999999999999999976 789999999986 5778899999999999
Q ss_pred EEEEcChhhH
Q 010509 266 PLYSGEASGA 275 (508)
Q Consensus 266 iv~~G~~~~~ 275 (508)
++..|++++.
T Consensus 245 i~~~g~~~~~ 254 (272)
T PRK14236 245 LVEYGDTDTL 254 (272)
T ss_pred EEecCCHHHH
Confidence 9999988765
No 188
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.2e-43 Score=376.18 Aligned_cols=227 Identities=25% Similarity=0.400 Sum_probs=199.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc----ccEEEECCE
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI----NGRITYNGK 113 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~----~G~I~~~G~ 113 (508)
.|+++||++.+.... +...+++||||++++||++||+|.|||||||+.++|.|++++. +|+|.++|+
T Consensus 5 lL~V~nL~v~~~~~~---------~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~ 75 (539)
T COG1123 5 LLEVENLTVEFATDG---------GRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGR 75 (539)
T ss_pred eEEEeceEEEEecCC---------cceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCc
Confidence 699999999987431 1357999999999999999999999999999999999998644 899999999
Q ss_pred eCCh--------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCC
Q 010509 114 PFSN--------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGP 183 (508)
Q Consensus 114 ~~~~--------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~ 183 (508)
++.. ...+.|+||||++ .+.|.+|+.+.+.-....+. ..+.++.++++.++|+.+||.+.... +.
T Consensus 76 dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~--~~~~~ea~~~a~elL~~Vgl~~~~~~---~~ 150 (539)
T COG1123 76 DLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG--KGSRAEARKRAVELLEQVGLPDPERR---DR 150 (539)
T ss_pred chhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHcCCCChhhh---cc
Confidence 7632 1246899999997 47888999999987766553 23478888999999999999987655 56
Q ss_pred CCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 184 LTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+|++|||||||||.||+||+.+|++|++||||++||+.++.+|+++|+++.+ .|.++|++|||+. .+.++||||++|+
T Consensus 151 yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~-Vva~~aDrv~Vm~ 229 (539)
T COG1123 151 YPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLG-VVAELADRVVVMY 229 (539)
T ss_pred CCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHH-HHHHhcCeEEEEE
Confidence 8899999999999999999999999999999999999999999999999985 5999999999996 7889999999999
Q ss_pred CCeEEEEcChhhHHHHH
Q 010509 263 EGYPLYSGEASGAMNYF 279 (508)
Q Consensus 263 ~G~iv~~G~~~~~~~~f 279 (508)
+|++++.|+++++++-+
T Consensus 230 ~G~iVE~G~~~~i~~~p 246 (539)
T COG1123 230 KGEIVETGPTEEILSNP 246 (539)
T ss_pred CCEEEEecCHHHHHhcc
Confidence 99999999999987644
No 189
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-43 Score=353.33 Aligned_cols=216 Identities=22% Similarity=0.383 Sum_probs=181.9
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~ 111 (508)
..++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|+++ |++|+|.++
T Consensus 23 ~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~ 89 (271)
T PRK14238 23 VVFDTQNLNLWYG-------------EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYR 89 (271)
T ss_pred eEEEEeeeEEEEC-------------CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEEC
Confidence 4699999999875 3469999999999999999999999999999999999986 699999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS----ECKNSLIG 181 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg 181 (508)
|+++.. ..++.++|++|++.+++ .|++||+.+....+ ...+++..++.+.++++.+++. +..++
T Consensus 90 g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~--- 163 (271)
T PRK14238 90 DQNIFDKSYSVEELRTNVGMVFQKPNPFP-KSIYDNVTYGPKIH--GIKDKKTLDEIVEKSLRGAAIWDELKDRLHD--- 163 (271)
T ss_pred CEEcccccccHHHHhhhEEEEecCCcccc-ccHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHcCCcchHHHHHhc---
Confidence 998731 34668999999998887 49999998865432 1112223345567778877653 33333
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
.+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++++|
T Consensus 164 --~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiiivsH~~~-~i~~~~d~i~~l 239 (271)
T PRK14238 164 --NAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK-DYSIIIVTHNMQ-QAARISDKTAFF 239 (271)
T ss_pred --CcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc-CCEEEEEEcCHH-HHHHhCCEEEEE
Confidence 3458999999999999999999999999999999999999999999999976 799999999986 577889999999
Q ss_pred eCCeEEEEcChhhH
Q 010509 262 SEGYPLYSGEASGA 275 (508)
Q Consensus 262 ~~G~iv~~G~~~~~ 275 (508)
++|+++..|++++.
T Consensus 240 ~~G~i~~~g~~~~~ 253 (271)
T PRK14238 240 LNGYVNEYDDTDKI 253 (271)
T ss_pred ECCEEEEeCCHHHH
Confidence 99999999998765
No 190
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-43 Score=348.78 Aligned_cols=219 Identities=21% Similarity=0.330 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc-----ccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI-----NGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~-----~G~I~~~G 112 (508)
.++++|+++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|. +|+|.++|
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (251)
T PRK14249 4 KIKIRGVNFFYH-------------KHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDN 70 (251)
T ss_pred eEEEEEEEEEEC-------------CeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECC
Confidence 588999999875 356999999999999999999999999999999999999876 69999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
+++.. ..++.++|++|++.+++. |++||+.+....+. ...+++..++++++++.+++.+...... +..+.
T Consensus 71 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 146 (251)
T PRK14249 71 ENIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLG--TTAQSRLDEVVEKSLRQAALWDEVKDNL-HKSGL 146 (251)
T ss_pred EEccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcC--CChhhHHHHHHHHHHHHhCCchhhhhHh-hCCcc
Confidence 98642 346789999999998885 99999988654321 1112233456778888888753221111 23345
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++ +++|||++||+++ .+.+.+|++++|++|++
T Consensus 147 ~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~-~~~tilivsh~~~-~~~~~~d~i~~l~~G~i 224 (251)
T PRK14249 147 ALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK-QNYTIAIVTHNMQ-QAARASDWTGFLLTGDL 224 (251)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh-cCCEEEEEeCCHH-HHHhhCCEEEEEeCCeE
Confidence 899999999999999999999999999999999999999999999995 5899999999986 57788999999999999
Q ss_pred EEEcChhhH
Q 010509 267 LYSGEASGA 275 (508)
Q Consensus 267 v~~G~~~~~ 275 (508)
++.|++++.
T Consensus 225 ~~~~~~~~~ 233 (251)
T PRK14249 225 VEYGRTGEI 233 (251)
T ss_pred EEeCCHHHH
Confidence 999998765
No 191
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-43 Score=350.89 Aligned_cols=216 Identities=22% Similarity=0.399 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~~G 112 (508)
.++++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+|+|+|+.++ ++|+|.++|
T Consensus 7 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g 73 (259)
T PRK14260 7 AIKVKDLSFYYN-------------TSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFG 73 (259)
T ss_pred eEEEEEEEEEEC-------------CeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECC
Confidence 589999999875 35699999999999999999999999999999999999864 589999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS----ECKNSLIGG 182 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg~ 182 (508)
+++.. ..++.++|++|++.+++ +|++||+.+....+. ..++.+..++++++++.+|+. +..++
T Consensus 74 ~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~---- 146 (259)
T PRK14260 74 QNIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISA--KLPQADLDEIVESALKGAALWQEVKDKLNK---- 146 (259)
T ss_pred EeccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCcchhhhHhcC----
Confidence 98732 34567999999999888 899999987654321 123334456778899999984 33343
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
.++.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++++|+
T Consensus 147 -~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~tiii~tH~~~-~i~~~~d~i~~l~ 223 (259)
T PRK14260 147 -SALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS-ELTIAIVTHNMQ-QATRVSDFTAFFS 223 (259)
T ss_pred -CcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhcCeEEEEe
Confidence 3459999999999999999999999999999999999999999999999975 699999999987 5778999999998
Q ss_pred -----CCeEEEEcChhhHH
Q 010509 263 -----EGYPLYSGEASGAM 276 (508)
Q Consensus 263 -----~G~iv~~G~~~~~~ 276 (508)
+|++++.|++++..
T Consensus 224 ~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 224 TDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred ccCCCCceEEEeCCHHHHh
Confidence 59999999998763
No 192
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-43 Score=350.52 Aligned_cols=221 Identities=21% Similarity=0.358 Sum_probs=186.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc-----ccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI-----NGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~-----~G~I~~~G 112 (508)
.|+++|+++.++ ++.+|+|+||++++||+++|+|+||||||||+++|+|+.+|+ +|+|.++|
T Consensus 7 ~l~~~nl~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g 73 (261)
T PRK14258 7 AIKVNNLSFYYD-------------TQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFN 73 (261)
T ss_pred eEEEeeEEEEeC-------------CeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECC
Confidence 589999999875 346999999999999999999999999999999999998874 89999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
+++.. ..++.++|++|++.+++ +|+.||+.+...... ..+..+..+++.++++.+++.+..+... +..+.
T Consensus 74 ~~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-~~~~~ 149 (261)
T PRK14258 74 QNIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVG--WRPKLEIDDIVESALKDADLWDEIKHKI-HKSAL 149 (261)
T ss_pred EEhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHHcCCcchhhhHh-cCCcc
Confidence 88631 34567999999998888 899999987653321 1123344567889999999854321111 13345
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeC--
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSE-- 263 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~-- 263 (508)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++|||+. .+.++||++++|++
T Consensus 150 ~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~~~ 228 (261)
T PRK14258 150 DLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLH-QVSRLSDFTAFFKGNE 228 (261)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhcCEEEEEccCC
Confidence 8999999999999999999999999999999999999999999999875 4899999999986 58899999999999
Q ss_pred ---CeEEEEcChhhHH
Q 010509 264 ---GYPLYSGEASGAM 276 (508)
Q Consensus 264 ---G~iv~~G~~~~~~ 276 (508)
|++++.|+++++.
T Consensus 229 ~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 229 NRIGQLVEFGLTKKIF 244 (261)
T ss_pred CcCceEEEeCCHHHHH
Confidence 9999999998874
No 193
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=1.9e-43 Score=343.42 Aligned_cols=210 Identities=28% Similarity=0.479 Sum_probs=182.0
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++.+... .+.+.+|+|+||++++||+++|+||||||||||+++|+|.++|++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~~~---------~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~ 72 (220)
T TIGR02982 2 ISIRNLNHYYGHG---------SLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGA 72 (220)
T ss_pred EEEEEEEEEccCC---------CcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhc
Confidence 6789999986411 012679999999999999999999999999999999999999999999999998742
Q ss_pred ------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 118 ------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
..++.++|++|++.+++.+|+.||+.++..... ....++..++++++++.+||.+..++.+ ++||||
T Consensus 73 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~lS~G 145 (220)
T TIGR02982 73 SEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQP--NLSYQEARERARAMLEAVGLGDHLDYYP-----HNLSGG 145 (220)
T ss_pred CHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCChhhhhcCh-----hhCCHH
Confidence 245689999999999999999999998654321 1334555677899999999988777665 489999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||+++ ..+++|++++|++|++
T Consensus 146 ~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~--~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 146 QKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNR--ILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHH--HHhhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999986 5899999999985 3478999999999986
No 194
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.7e-43 Score=353.13 Aligned_cols=221 Identities=22% Similarity=0.378 Sum_probs=187.0
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~~ 111 (508)
..|+++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++
T Consensus 20 ~~l~i~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~ 86 (276)
T PRK14271 20 PAMAAVNLTLGFA-------------GKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLG 86 (276)
T ss_pred cEEEEeeEEEEEC-------------CEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEEC
Confidence 3689999999975 35799999999999999999999999999999999999874 79999999
Q ss_pred CEeCCh-----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 112 GKPFSN-----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 112 G~~~~~-----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
|+++.. ..++.++|++|++.+++ .|++||+.+..... ...+.++.++++.++++.+|+.+..++.. +..++
T Consensus 87 g~~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~~~~~l-~~~~~ 162 (276)
T PRK14271 87 GRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH--KLVPRKEFRGVAQARLTEVGLWDAVKDRL-SDSPF 162 (276)
T ss_pred CEEccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHcCCCchhhhHh-hCCcc
Confidence 998742 34678999999998888 79999998764322 11234455556788999999975332211 12345
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++||+++|++|++
T Consensus 163 ~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiiivsH~~~-~~~~~~dri~~l~~G~i 240 (276)
T PRK14271 163 RLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD-RLTVIIVTHNLA-QAARISDRAALFFDGRL 240 (276)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999976 489999999986 57789999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|++++..
T Consensus 241 ~~~g~~~~~~ 250 (276)
T PRK14271 241 VEEGPTEQLF 250 (276)
T ss_pred EEeCCHHHHH
Confidence 9999988763
No 195
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-43 Score=355.28 Aligned_cols=217 Identities=21% Similarity=0.355 Sum_probs=183.5
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~ 111 (508)
..|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.. |++|+|.++
T Consensus 38 ~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~ 104 (286)
T PRK14275 38 PHVVAKNFSIYYG-------------EFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFD 104 (286)
T ss_pred eEEEEeeeEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEEC
Confidence 4689999999875 3469999999999999999999999999999999999853 489999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS----ECKNSLIG 181 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg 181 (508)
|+++.. ..++.++|++|++.+++. ||.||+.+....+. ..+....++++.++++.+|+. +..++.
T Consensus 105 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~-- 179 (286)
T PRK14275 105 GEDIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHG--INDKKQLEEIVEKSLRKAALWDEVSDRLDKN-- 179 (286)
T ss_pred CEEhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcC--CCcHHHHHHHHHHHHHHhCCccchhhHhhCC--
Confidence 998632 245689999999988885 99999998654321 112233456678889999874 334444
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
++.||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++++|
T Consensus 180 ---~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~-~~tvIivsH~~~-~~~~~~d~i~~L 254 (286)
T PRK14275 180 ---ALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG-SYTIMIVTHNMQ-QASRVSDYTMFF 254 (286)
T ss_pred ---hhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEE
Confidence 458999999999999999999999999999999999999999999999975 589999999986 577889999999
Q ss_pred eCCeEEEEcChhhHH
Q 010509 262 SEGYPLYSGEASGAM 276 (508)
Q Consensus 262 ~~G~iv~~G~~~~~~ 276 (508)
++|+++..|+++++.
T Consensus 255 ~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 255 YEGVLVEHAPTAQLF 269 (286)
T ss_pred ECCEEEEeCCHHHHH
Confidence 999999999988763
No 196
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=2.9e-43 Score=349.16 Aligned_cols=218 Identities=25% Similarity=0.406 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe---
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP--- 114 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~--- 114 (508)
.|+++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|++
T Consensus 3 ~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 69 (253)
T TIGR02323 3 LLQVSGLSKSYG-------------GGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAE 69 (253)
T ss_pred eEEEeeeEEEeC-------------CceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccc
Confidence 589999999875 3568999999999999999999999999999999999999999999999976
Q ss_pred --CCh----h----ccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccC
Q 010509 115 --FSN----Q----MTRNTGFVTQEDV--LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIG 181 (508)
Q Consensus 115 --~~~----~----~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg 181 (508)
+.. . .++.++|++|++. +.+.+|+.||+.+..... . .....+..++++++++.+|+. +..++.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~-~-~~~~~~~~~~~~~~l~~l~l~~~~~~~~~- 146 (253)
T TIGR02323 70 LELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAI-G-ARHYGNIRAAAHDWLEEVEIDPTRIDDLP- 146 (253)
T ss_pred cccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHh-c-ccchHHHHHHHHHHHHHcCCChhhhhcCc-
Confidence 431 1 2356999999974 456679999987543211 1 011223446788999999997 3566555
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLL 260 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~l 260 (508)
+.|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++||++. .+...+|++++
T Consensus 147 ----~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~-~~~~~~d~~~~ 221 (253)
T TIGR02323 147 ----RAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLG-VARLLAQRLLV 221 (253)
T ss_pred ----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEE
Confidence 489999999999999999999999999999999999999999999998764 899999999986 57778999999
Q ss_pred EeCCeEEEEcChhhHH
Q 010509 261 LSEGYPLYSGEASGAM 276 (508)
Q Consensus 261 L~~G~iv~~G~~~~~~ 276 (508)
|++|+++..|++++..
T Consensus 222 l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 222 MQQGRVVESGLTDQVL 237 (253)
T ss_pred EECCEEEEECCHHHHh
Confidence 9999999999887653
No 197
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-43 Score=354.89 Aligned_cols=215 Identities=23% Similarity=0.389 Sum_probs=183.1
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEE
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITY 110 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~ 110 (508)
...|+++|+++.+. ++.+|+|+||++++||+++|+||||||||||+++|+|+.+ |++|+|.+
T Consensus 37 ~~~l~i~~l~~~~~-------------~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i 103 (285)
T PRK14254 37 ETVIEARDLNVFYG-------------DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTF 103 (285)
T ss_pred CceEEEEEEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEE
Confidence 34699999999875 3569999999999999999999999999999999999985 68999999
Q ss_pred CCEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----cccccc
Q 010509 111 NGKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLI 180 (508)
Q Consensus 111 ~G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v 180 (508)
+|+++.. ..++.++|++|++.+++. ||.||+.+....+. ... +..++++++++.+||.+ ..++.
T Consensus 104 ~G~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~- 177 (285)
T PRK14254 104 RGKNVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSS- 177 (285)
T ss_pred CCEEccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCC-
Confidence 9998631 346689999999988885 99999988654321 122 34457889999999853 33443
Q ss_pred CCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEE-
Q 010509 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVL- 259 (508)
Q Consensus 181 g~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~- 259 (508)
+.+||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++ .|||++||++. .+..++||++
T Consensus 178 ----~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~-~tiii~tH~~~-~i~~~~dri~v 251 (285)
T PRK14254 178 ----GLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEE-YTVVIVTHNMQ-QAARISDKTAV 251 (285)
T ss_pred ----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcC-CEEEEEeCCHH-HHHhhcCEEEE
Confidence 4599999999999999999999999999999999999999999999999864 89999999986 5778899975
Q ss_pred EEeCCeEEEEcChhhH
Q 010509 260 LLSEGYPLYSGEASGA 275 (508)
Q Consensus 260 lL~~G~iv~~G~~~~~ 275 (508)
+|++|+++..|++++.
T Consensus 252 ~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 252 FLTGGELVEFDDTDKI 267 (285)
T ss_pred EeeCCEEEEeCCHHHH
Confidence 6799999999988765
No 198
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.2e-44 Score=350.13 Aligned_cols=215 Identities=27% Similarity=0.433 Sum_probs=176.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++.. ++.+++|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 i~~~~l~~~~~~~-----------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~ 69 (234)
T cd03251 1 VEFKNVTFRYPGD-----------GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDY 69 (234)
T ss_pred CEEEEEEEEeCCC-----------CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhC
Confidence 4678999887510 1369999999999999999999999999999999999999999999999988642
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCCcccccccCCCCCCc
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI-----KCAEAVMTEL--GLSECKNSLIGGPLTRG 187 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~ 187 (508)
..++.++|++|++.+++ .|++||+.+.... ....+.. ..+++.++.+ ++.+..++. +..
T Consensus 70 ~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-----~~~ 138 (234)
T cd03251 70 TLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPG-----ATREEVEEAARAANAHEFIMELPEGYDTVIGER-----GVK 138 (234)
T ss_pred CHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCC-----CCHHHHHHHHHHcCcHHHHHhcccCcceeeccC-----CCc
Confidence 34567999999998887 6999999875321 1111111 1234556655 565555544 458
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||+++. +.. ||++++|++|+++
T Consensus 139 LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~-~d~v~~l~~G~i~ 215 (234)
T cd03251 139 LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK-NRTTFVIAHRLST-IEN-ADRIVVLEDGKIV 215 (234)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEecCHHH-Hhh-CCEEEEecCCeEe
Confidence 999999999999999999999999999999999999999999999975 8999999999974 555 9999999999999
Q ss_pred EEcChhhHHHH
Q 010509 268 YSGEASGAMNY 278 (508)
Q Consensus 268 ~~G~~~~~~~~ 278 (508)
..|++++..+.
T Consensus 216 ~~~~~~~~~~~ 226 (234)
T cd03251 216 ERGTHEELLAQ 226 (234)
T ss_pred eeCCHHHHHHc
Confidence 99988776443
No 199
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-43 Score=348.36 Aligned_cols=220 Identities=23% Similarity=0.343 Sum_probs=183.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC--C---cccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG--R---INGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~--~---~~G~I~~~G 112 (508)
.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ | ++|+|.++|
T Consensus 6 ~i~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 72 (253)
T PRK14261 6 ILSTKNLNLWYG-------------EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNG 72 (253)
T ss_pred eEEEeeeEEEEC-------------CeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECC
Confidence 699999999875 3579999999999999999999999999999999999864 3 489999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
+++.. ..++.++|++|++.+++. ||+||+.+....+. .....+.++.++++++.+++.+...+.. +..++
T Consensus 73 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 148 (253)
T PRK14261 73 ENIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHG--EKNKKTLDTIVEKSLKGAALWDEVKDRL-HDSAL 148 (253)
T ss_pred EEccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcC--CCCHHHHHHHHHHHHHHhcCchhhHHHh-hcChh
Confidence 98742 235679999999998885 99999998754331 1123344566788899998853211111 12345
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||++. .+.+.+|++++|++|++
T Consensus 149 ~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~-~~tvii~sh~~~-~~~~~~d~v~~l~~G~i 226 (253)
T PRK14261 149 SLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK-EYTVIIVTHNMQ-QAARVSDYTGFMYLGKL 226 (253)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh-CceEEEEEcCHH-HHHhhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999976 589999999986 47788999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|++++..
T Consensus 227 ~~~g~~~~~~ 236 (253)
T PRK14261 227 IEFDKTTQIF 236 (253)
T ss_pred EEcCCHHHHH
Confidence 9999987653
No 200
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=1.7e-43 Score=346.13 Aligned_cols=202 Identities=25% Similarity=0.377 Sum_probs=174.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC----cccEEEECCEeCCh-hc-cccEEEEecCCC--CCCCCC
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR----INGRITYNGKPFSN-QM-TRNTGFVTQEDV--LSPYLT 137 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~----~~G~I~~~G~~~~~-~~-~~~i~yv~Q~~~--l~~~lT 137 (508)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+| ++|+|.++|+++.. .. ++.++|++|++. +.+.+|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 57899999999999999999999999999999999988 89999999998754 22 357999999984 667789
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC---cccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 010509 138 VTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS---ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEP 214 (508)
Q Consensus 138 v~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEP 214 (508)
+.|++.+...... ....+.+++++++++.+|+. +..++.+ +.|||||||||+||++|+.+|++++||||
T Consensus 81 ~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----~~LS~G~~qrv~laral~~~p~vllLDEP 152 (230)
T TIGR02770 81 MGNHAIETLRSLG---KLSKQARALILEALEAVGLPDPEEVLKKYP-----FQLSGGMLQRVMIALALLLEPPFLIADEP 152 (230)
T ss_pred HHHHHHHHHHHcC---ccHHHHHHHHHHHHHHcCCCchHHHHhCCh-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 9999977643221 12234456789999999998 3455554 48999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHH
Q 010509 215 TSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 215 tsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
|+|||+.++..+.+.|++++++ |+|||++||+++ .+..++|++++|++|+++..|++++..
T Consensus 153 t~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 153 TTDLDVVNQARVLKLLRELRQLFGTGILLITHDLG-VVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred ccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 9999999999999999999874 899999999986 577899999999999999999987764
No 201
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.8e-43 Score=346.78 Aligned_cols=217 Identities=24% Similarity=0.380 Sum_probs=181.9
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC--C---cccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG--R---INGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~--~---~~G~I~~~ 111 (508)
.+++++|+++.++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+ | ++|+|.++
T Consensus 4 ~~l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 70 (252)
T PRK14255 4 KIITSSDVHLFYG-------------KFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLR 70 (252)
T ss_pred ceEEEEeEEEEEC-------------CeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEc
Confidence 4699999999875 3569999999999999999999999999999999999864 4 59999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----cccccccC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS----ECKNSLIG 181 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~vg 181 (508)
|+++.. ..++.++|++|++.+++ .|+.||+.+....+.. ..++...+++.+.++.+++. +..++.
T Consensus 71 g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~-- 145 (252)
T PRK14255 71 GQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGV--KDKAVLDEAVETSLKQAAIWDEVKDHLHES-- 145 (252)
T ss_pred CEEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCccchhhHHhcC--
Confidence 998731 34568999999998888 6999999886543211 12222345567788888774 233333
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
+++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.+.+|++++|
T Consensus 146 ---~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~vsH~~~-~~~~~~d~i~~l 220 (252)
T PRK14255 146 ---ALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD-QYTIILVTHSMH-QASRISDKTAFF 220 (252)
T ss_pred ---cccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEECCHH-HHHHhCCEEEEE
Confidence 458999999999999999999999999999999999999999999999976 589999999986 577889999999
Q ss_pred eCCeEEEEcChhhHH
Q 010509 262 SEGYPLYSGEASGAM 276 (508)
Q Consensus 262 ~~G~iv~~G~~~~~~ 276 (508)
++|+++..|++.+..
T Consensus 221 ~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 221 LTGNLIEFADTKQMF 235 (252)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999887663
No 202
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=1.4e-43 Score=375.66 Aligned_cols=230 Identities=25% Similarity=0.445 Sum_probs=197.1
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++||++.|......+ .+..+...+++||||++++||++||+|+||||||||.|+|+|+.+|++|+|.++|.+.+
T Consensus 279 ~ll~V~~l~k~y~~~~~~~--~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~ 356 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLF--VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLD 356 (539)
T ss_pred ceeEeeeeeeeeccccccc--cccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccc
Confidence 4689999999987543211 11123467999999999999999999999999999999999999999999999998731
Q ss_pred --h----hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCc
Q 010509 117 --N----QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRG 187 (508)
Q Consensus 117 --~----~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~ 187 (508)
. ..++.+-+|+||+ .|.|.+||++++......... ....++++++.++++..||.. ..+ .+|++
T Consensus 357 ~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~~VgL~~~~l~-----ryP~e 429 (539)
T COG1123 357 LTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLELVGLPPEFLD-----RYPHE 429 (539)
T ss_pred cccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHHHcCCCHHHHh-----cCchh
Confidence 1 3456788888886 699999999999887654432 235677788999999999985 344 55679
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
||||||||++|||||+.+|++|++|||||.||+..+.+++++|+++.++ |.|.+++|||+. .+.++||||++|++|++
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~-vV~~i~drv~vm~~G~i 508 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLA-VVRYIADRVAVMYDGRI 508 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHH-HHHhhCceEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999875 999999999986 78899999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
|..|+.+++.
T Consensus 509 VE~G~~~~v~ 518 (539)
T COG1123 509 VEEGPTEKVF 518 (539)
T ss_pred EEeCCHHHHh
Confidence 9999888764
No 203
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=3.3e-43 Score=352.08 Aligned_cols=227 Identities=24% Similarity=0.410 Sum_probs=188.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|+++.+..... .+ +..++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 3 ~l~~~nl~~~~~~~~~-~~---~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~ 78 (268)
T PRK10419 3 LLNVSGLSHHYAHGGL-SG---KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAK 78 (268)
T ss_pred eEEEeceEEEecCCcc-cc---ccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccc
Confidence 4889999998752100 00 0013579999999999999999999999999999999999999999999999998642
Q ss_pred -------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCc
Q 010509 118 -------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRG 187 (508)
Q Consensus 118 -------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~ 187 (508)
..++.++|++|++ .+++..|+.|++.+..... ...+..+..++++++++.+|+. +..++.+ +.
T Consensus 79 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~--~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~~ 151 (268)
T PRK10419 79 LNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHL--LSLDKAERLARASEMLRAVDLDDSVLDKRP-----PQ 151 (268)
T ss_pred cChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhh--ccCCHHHHHHHHHHHHHHcCCChhHhhCCC-----cc
Confidence 2356899999997 4677899999987653211 1223445556789999999996 4666655 48
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|+|++||++. .+.+++|++++|++|++
T Consensus 152 LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~-~i~~~~d~i~~l~~G~i 230 (268)
T PRK10419 152 LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLR-LVERFCQRVMVMDNGQI 230 (268)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHH-HHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999864 899999999986 57788999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
++.|++++..
T Consensus 231 ~~~g~~~~~~ 240 (268)
T PRK10419 231 VETQPVGDKL 240 (268)
T ss_pred eeeCChhhcc
Confidence 9999988754
No 204
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.1e-43 Score=421.73 Aligned_cols=227 Identities=26% Similarity=0.417 Sum_probs=204.0
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
-.|+++||+++++. +++.+|+|+|+.|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 1936 ~~L~v~nLsK~Y~~-----------~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~ 2004 (2272)
T TIGR01257 1936 DILRLNELTKVYSG-----------TSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSIL 2004 (2272)
T ss_pred ceEEEEEEEEEECC-----------CCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECc
Confidence 36999999998751 1257999999999999999999999999999999999999999999999999985
Q ss_pred h---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 117 N---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 117 ~---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
. ..++.+||+||++.+++.+||+|++.+.+.++ +.++++.+++++++++.+||.+.+|++++ +||||||
T Consensus 2005 ~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~---g~~~~~~~~~v~~lLe~lgL~~~~dk~~~-----~LSGGqK 2076 (2272)
T TIGR01257 2005 TNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLR---GVPAEEIEKVANWSIQSLGLSLYADRLAG-----TYSGGNK 2076 (2272)
T ss_pred chHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHH
Confidence 3 34668999999999999999999999877664 23445556778999999999998888875 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
|||+||+||+.+|+|++|||||+|||+.+++.+++.|++++++|+|||++||+++ ++..+|||+++|++|+++..|+++
T Consensus 2077 qRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~me-e~e~lcDrV~IL~~G~i~~~Gs~q 2155 (2272)
T TIGR01257 2077 RKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSME-ECEALCTRLAIMVKGAFQCLGTIQ 2155 (2272)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999999878999999999986 688999999999999999999999
Q ss_pred hHHHHHHhcCC
Q 010509 274 GAMNYFASIGY 284 (508)
Q Consensus 274 ~~~~~f~~~g~ 284 (508)
++.+.|.. ||
T Consensus 2156 ~Lk~~~g~-g~ 2165 (2272)
T TIGR01257 2156 HLKSKFGD-GY 2165 (2272)
T ss_pred HHHHHhCC-ce
Confidence 99988863 44
No 205
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-43 Score=381.35 Aligned_cols=216 Identities=23% Similarity=0.335 Sum_probs=187.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++ ++.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~~-------------~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~ 70 (501)
T PRK11288 4 YLSFDGIGKTFP-------------GVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRF 70 (501)
T ss_pred eEEEeeeEEEEC-------------CEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCC
Confidence 689999999875 3569999999999999999999999999999999999999999999999998742
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++.+++.+||.||+.++............+.+++++++++.+||.+..++.++ +|||||
T Consensus 71 ~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq 145 (501)
T PRK11288 71 ASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLK-----YLSIGQ 145 (501)
T ss_pred CCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchh-----hCCHHH
Confidence 2356899999999999999999999885321111112344555678899999999877776654 899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||+. .+.++||++++|++|+++..++.
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~-~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 146 RQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRME-EIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEeecCc
Confidence 99999999999999999999999999999999999999999878999999999986 57789999999999999877653
No 206
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=6.5e-43 Score=345.32 Aligned_cols=227 Identities=27% Similarity=0.398 Sum_probs=183.9
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--CCcccEEEECCEeCC
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRINGRITYNGKPFS 116 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--~~~~G~I~~~G~~~~ 116 (508)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++.
T Consensus 2 i~~~nl~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~ 68 (248)
T PRK09580 2 LSIKDLHVSVE-------------DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 68 (248)
T ss_pred eEEEEEEEEeC-------------CeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccc
Confidence 78899999875 356999999999999999999999999999999999995 689999999998764
Q ss_pred h----h-ccccEEEEecCCCCCCCCCHHHHHHHHHH-hcC--CC-CCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 010509 117 N----Q-MTRNTGFVTQEDVLSPYLTVTETMVFTAL-LQL--PN-SFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTR 186 (508)
Q Consensus 117 ~----~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~-l~~--~~-~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 186 (508)
. . .++.++|++|++.+++.+|+.+++.+... .+. .. .....+..++++++++.+++. +..++.+. +
T Consensus 69 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~ 144 (248)
T PRK09580 69 ELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVN----V 144 (248)
T ss_pred cCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCC----C
Confidence 2 1 23569999999998888888777654321 110 00 011223356778899999995 44454432 3
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhh-ccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYM-FHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~-~D~v~lL~~G~ 265 (508)
+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|+++++.|+|||++|||+. .+... +|++++|++|+
T Consensus 145 ~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~-~~~~~~~d~i~~l~~g~ 223 (248)
T PRK09580 145 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQGR 223 (248)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHhhhCCEEEEEECCe
Confidence 79999999999999999999999999999999999999999999999877899999999986 45555 89999999999
Q ss_pred EEEEcChhhHHHHHHhcCC
Q 010509 266 PLYSGEASGAMNYFASIGY 284 (508)
Q Consensus 266 iv~~G~~~~~~~~f~~~g~ 284 (508)
+++.|+++.+ ..++..++
T Consensus 224 i~~~g~~~~~-~~~~~~~~ 241 (248)
T PRK09580 224 IVKSGDFTLV-KQLEEQGY 241 (248)
T ss_pred EEEeCCHHHH-HHHHhcCC
Confidence 9999998854 44455444
No 207
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-43 Score=352.46 Aligned_cols=219 Identities=23% Similarity=0.393 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|++++++. ++.+|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 6 ~l~~~~l~~~~~~------------~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~ 73 (272)
T PRK15056 6 GIVVNDVTVTWRN------------GHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ 73 (272)
T ss_pred eEEEEeEEEEecC------------CcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH
Confidence 5899999998741 3569999999999999999999999999999999999999999999999998754
Q ss_pred hc-cccEEEEecCCCCC--CCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 QM-TRNTGFVTQEDVLS--PYLTVTETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ~~-~~~i~yv~Q~~~l~--~~lTv~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
.. ++.++|++|++.+. ...+++|++.+....... ......+.+++++++++.+||.+..++.++ .||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~LSgG~~ 148 (272)
T PRK15056 74 ALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIG-----ELSGGQK 148 (272)
T ss_pred hhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHH
Confidence 33 34699999997652 234788988653211000 011122334567889999999988877765 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+++|+++++ +|++++.|+++
T Consensus 149 qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~-~~~~~~d~v~~~-~G~i~~~g~~~ 226 (272)
T PRK15056 149 KRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLG-SVTEFCDYTVMV-KGTVLASGPTE 226 (272)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHH
Confidence 9999999999999999999999999999999999999999877999999999986 577899999877 89999999987
Q ss_pred hH
Q 010509 274 GA 275 (508)
Q Consensus 274 ~~ 275 (508)
+.
T Consensus 227 ~~ 228 (272)
T PRK15056 227 TT 228 (272)
T ss_pred hc
Confidence 65
No 208
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=5.2e-44 Score=323.94 Aligned_cols=212 Identities=31% Similarity=0.487 Sum_probs=187.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++++++.+.... +...||++|++.|++||-+||+|||||||||||-+++|+..|++|+|.+.|+++.+
T Consensus 6 ii~~~~l~ktvg~~~---------~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ 76 (228)
T COG4181 6 IIEVHHLSKTVGQGE---------GELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHK 76 (228)
T ss_pred eeehhhhhhhhcCCC---------cceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhh
Confidence 588899998876432 35789999999999999999999999999999999999999999999999998853
Q ss_pred -------h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC
Q 010509 118 -------Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 118 -------~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 189 (508)
. ..+++|+|||...+.|+||..||+...+.++-. +..+..+.+.+.|+.+||.+..+.+. .+||
T Consensus 77 ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~HyP-----~qLS 148 (228)
T COG4181 77 LDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTHYP-----AQLS 148 (228)
T ss_pred cCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccccCc-----cccC
Confidence 1 346899999999999999999999998877531 33445567889999999998776554 5999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
|||+|||+||||++..|+|||.||||-+||..+..+|.++|-.+.+ .|.|.|++||||. +..-|||.+-|.+|+++.
T Consensus 149 GGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~--LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 149 GGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGRLVE 226 (228)
T ss_pred chHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHH--HHHhhhheeeeecceecc
Confidence 9999999999999999999999999999999999999999999975 5999999999986 556799999999999874
No 209
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=9.6e-44 Score=349.31 Aligned_cols=217 Identities=26% Similarity=0.443 Sum_probs=173.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++.++.. +++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 l~i~~l~~~~~~~----------~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~ 70 (238)
T cd03249 1 IEFKNVSFRYPSR----------PDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDL 70 (238)
T ss_pred CeEEEEEEecCCC----------CCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhc
Confidence 4678999886411 12469999999999999999999999999999999999999999999999988642
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHc--CCCcccccccCCCCCCc
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIK-----CAEAVMTEL--GLSECKNSLIGGPLTRG 187 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~vg~~~~~~ 187 (508)
..++.++|++|++.+++ .||+||+.+.... ...++..+ .+.+.++.+ ++....++ .++.
T Consensus 71 ~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-----~~~~ 139 (238)
T cd03249 71 NLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPD-----ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGE-----RGSQ 139 (238)
T ss_pred CHHHHHhhEEEECCchhhhh-hhHHHHhhccCCC-----CCHHHHHHHHHHcChHHHHHhhccccceeecc-----CCcc
Confidence 23567999999998876 6999999875321 11111111 112222333 33333333 3468
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||||||+||++|+.+|++++|||||+|||+.++..+.+.|++++ +|+|||++||+++. +. .||++++|++|+++
T Consensus 140 LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~-~g~~vi~~sh~~~~-~~-~~d~v~~l~~G~i~ 216 (238)
T cd03249 140 LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM-KGRTTIVIAHRLST-IR-NADLIAVLQNGQVV 216 (238)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hh-hCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999997 78999999999874 54 79999999999999
Q ss_pred EEcChhhHHHHH
Q 010509 268 YSGEASGAMNYF 279 (508)
Q Consensus 268 ~~G~~~~~~~~f 279 (508)
+.|+.++..+..
T Consensus 217 ~~~~~~~~~~~~ 228 (238)
T cd03249 217 EQGTHDELMAQK 228 (238)
T ss_pred EeCCHHHHhhcC
Confidence 999987765543
No 210
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-43 Score=347.36 Aligned_cols=220 Identities=20% Similarity=0.341 Sum_probs=185.7
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEE
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITY 110 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~ 110 (508)
+..+.++++++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|+++| ++|+|.+
T Consensus 6 ~~~~~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~ 72 (261)
T PRK14263 6 PIVMDCKLDKIFYG-------------NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHF 72 (261)
T ss_pred CceEEEEeEEEEeC-------------CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEE
Confidence 55688999988764 45799999999999999999999999999999999999865 7999999
Q ss_pred CCEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 010509 111 NGKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPL 184 (508)
Q Consensus 111 ~G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 184 (508)
+|+++.. ..++.++|++|++.++ .+|+.||+.+....+. . ..+..++++++++.++|.+..+...+ ..
T Consensus 73 ~g~~i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~-~~~~~~~~~~~l~~~~l~~~i~~~~~-~~ 146 (261)
T PRK14263 73 LGQDVYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---Y-KGDLGDRVKHALQGAALWDEVKDKLK-VS 146 (261)
T ss_pred CCEeccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---c-hHHHHHHHHHHHHHcCCchhhhhhhh-CC
Confidence 9998742 3456799999999887 5899999998754321 1 22345678899999998653322221 34
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe--
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS-- 262 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~-- 262 (508)
++.||||||||++|||||+.+|++|+|||||+|||+.++.++.+.|+++++ ++|+|++||+++ .+.+++||+++|+
T Consensus 147 ~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~-~~tii~isH~~~-~i~~~~d~v~~l~~~ 224 (261)
T PRK14263 147 GLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK-DYTIALVTHNMQ-QAIRVADTTAFFSVD 224 (261)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEeCCHH-HHHHhCCEEEEEecc
Confidence 568999999999999999999999999999999999999999999999964 799999999986 5778999999996
Q ss_pred ------CCeEEEEcChhhHH
Q 010509 263 ------EGYPLYSGEASGAM 276 (508)
Q Consensus 263 ------~G~iv~~G~~~~~~ 276 (508)
+|+++..|++++..
T Consensus 225 ~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 225 ISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred cccccCCceEEEeCCHHHHH
Confidence 89999999988654
No 211
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-43 Score=350.24 Aligned_cols=218 Identities=21% Similarity=0.353 Sum_probs=183.1
Q ss_pred CCceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEE
Q 010509 34 KHPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRI 108 (508)
Q Consensus 34 ~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I 108 (508)
..+..|+++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.++ ++|+|
T Consensus 16 ~~~~~l~~~nl~~~~~-------------~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i 82 (274)
T PRK14265 16 PDHSVFEVEGVKVFYG-------------GFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRL 82 (274)
T ss_pred CCCceEEEeeEEEEeC-------------CeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceE
Confidence 3455899999999875 35699999999999999999999999999999999999752 69999
Q ss_pred EECCEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC----ccccc
Q 010509 109 TYNGKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS----ECKNS 178 (508)
Q Consensus 109 ~~~G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~ 178 (508)
.++|+++.. ..++.++|++|++.+++. |+.||+.+....+ ... .+..+.+++.++.+++. +..++
T Consensus 83 ~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~ 157 (274)
T PRK14265 83 LYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRAN---GYK-GNLDELVEDSLRRAAIWEEVKDKLKE 157 (274)
T ss_pred EECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhc---Cch-HHHHHHHHHHHHHcccchhhHHHhcC
Confidence 999998731 345689999999988875 9999998764332 111 12234567788888874 23333
Q ss_pred ccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEE
Q 010509 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKV 258 (508)
Q Consensus 179 ~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v 258 (508)
.+..|||||||||+||+||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|++
T Consensus 158 -----~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tiii~sH~~~-~~~~~~d~i 230 (274)
T PRK14265 158 -----KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE-QYTIIMVTHNMQ-QASRVADWT 230 (274)
T ss_pred -----CcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEE
Confidence 3458999999999999999999999999999999999999999999999975 689999999986 577899999
Q ss_pred EEEe---------CCeEEEEcChhhHH
Q 010509 259 LLLS---------EGYPLYSGEASGAM 276 (508)
Q Consensus 259 ~lL~---------~G~iv~~G~~~~~~ 276 (508)
++|+ +|++++.|+++++.
T Consensus 231 ~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 231 AFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred EEEecccccccccCceEEEeCCHHHHH
Confidence 9998 89999999998774
No 212
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=5.2e-43 Score=334.29 Aligned_cols=190 Identities=51% Similarity=0.859 Sum_probs=167.3
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--CCcccEEEECCEe
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRINGRITYNGKP 114 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--~~~~G~I~~~G~~ 114 (508)
+.++++|+++.++... ....+.+|+|+|+++++||+++|+||||||||||+++|+|+. +|++|+|.++|++
T Consensus 2 ~~l~~~~ls~~~~~~~-------~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~ 74 (194)
T cd03213 2 VTLSFRNLTVTVKSSP-------SKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRP 74 (194)
T ss_pred cEEEEEeeEEEEecCC-------CcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEe
Confidence 3589999999986210 001256999999999999999999999999999999999999 9999999999998
Q ss_pred CCh-hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 115 FSN-QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 115 ~~~-~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
+.. ..++.++|++|++.+++.+|++||+.+..... .||||||
T Consensus 75 ~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~-------------------------------------~LS~G~~ 117 (194)
T cd03213 75 LDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR-------------------------------------GLSGGER 117 (194)
T ss_pred CchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc-------------------------------------cCCHHHH
Confidence 864 45678999999999999999999997642110 5999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|+++..+.+.+|++++|++|++++.|
T Consensus 118 qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 118 KRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999998779999999999875677889999999999998764
No 213
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-43 Score=381.40 Aligned_cols=215 Identities=21% Similarity=0.320 Sum_probs=185.7
Q ss_pred EeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----
Q 010509 42 EDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN---- 117 (508)
Q Consensus 42 ~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~---- 117 (508)
+|++++++ ++++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 2 ~nl~~~~~-------------~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 68 (491)
T PRK10982 2 SNISKSFP-------------GVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSK 68 (491)
T ss_pred CceEEEeC-------------CEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHH
Confidence 57777764 3579999999999999999999999999999999999999999999999998742
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++|++.+++.+||+||+.+..........+.++..++++++++.+|+.+..++.++ +|||||||||
T Consensus 69 ~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv 143 (491)
T PRK10982 69 EALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVA-----TLSVSQMQMI 143 (491)
T ss_pred HHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchh-----hCCHHHHHHH
Confidence 2356799999999899999999999875321101011334445678999999999887777664 8999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
+||++|+.+|++|||||||+|||+.++..+.+.|++++++|+|||++||+++ .+..+||++++|++|+++..|++++.
T Consensus 144 ~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~ 221 (491)
T PRK10982 144 EIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKME-EIFQLCDEITILRDGQWIATQPLAGL 221 (491)
T ss_pred HHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEeecChhhC
Confidence 9999999999999999999999999999999999999888999999999986 57788999999999999999987654
No 214
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4e-43 Score=380.65 Aligned_cols=218 Identities=25% Similarity=0.398 Sum_probs=187.4
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC--cccEEEECCEeCC
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR--INGRITYNGKPFS 116 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~--~~G~I~~~G~~~~ 116 (508)
|+++|++++++ ++++|+|+|+++++||+++|+||||||||||+|+|+|+.+| ++|+|.++|+++.
T Consensus 2 l~i~~l~~~~~-------------~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTFG-------------GVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEeC-------------CeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 78899999874 35699999999999999999999999999999999999876 7999999999874
Q ss_pred h-----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCccC
Q 010509 117 N-----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN-SFTEKEKIKCAEAVMTELGLSECK-NSLIGGPLTRGVS 189 (508)
Q Consensus 117 ~-----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LS 189 (508)
. ..++.++||+|++.+++.+||.||+.+........ ....++..++++++++.+||.+.. ++.+ ++||
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS 143 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPV-----GDYG 143 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCch-----hhCC
Confidence 3 12457999999999999999999998864322111 123344556788999999998654 4445 4899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
|||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++|||++ .+.++||++++|++|+++..
T Consensus 144 gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~-~~~~~~d~i~~l~~G~i~~~ 222 (500)
T TIGR02633 144 GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLN-EVKAVCDTICVIRDGQHVAT 222 (500)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHHhCCEEEEEeCCeEeee
Confidence 99999999999999999999999999999999999999999999888999999999986 57789999999999999999
Q ss_pred cChhhH
Q 010509 270 GEASGA 275 (508)
Q Consensus 270 G~~~~~ 275 (508)
|++++.
T Consensus 223 ~~~~~~ 228 (500)
T TIGR02633 223 KDMSTM 228 (500)
T ss_pred cCcccC
Confidence 987653
No 215
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=4.2e-43 Score=337.27 Aligned_cols=198 Identities=23% Similarity=0.394 Sum_probs=173.2
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------------~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~ 68 (204)
T PRK13538 2 LEARNLACERD-------------ERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQ 68 (204)
T ss_pred eEEEEEEEEEC-------------CEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccc
Confidence 78899999875 3569999999999999999999999999999999999999999999999998742
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|++.+++.+|+.||+.+....+ .. +..++++++++.+||.+..++.+ +.||||||||
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~---~~---~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qr 137 (204)
T PRK13538 69 RDEYHQDLLYLGHQPGIKTELTALENLRFYQRLH---GP---GDDEALWEALAQVGLAGFEDVPV-----RQLSAGQQRR 137 (204)
T ss_pred hHHhhhheEEeCCccccCcCCcHHHHHHHHHHhc---Cc---cHHHHHHHHHHHcCCHHHhhCCh-----hhcCHHHHHH
Confidence 34668999999999999999999998875432 11 22356789999999988777665 4899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||+++ .+..+.+|++++
T Consensus 138 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~i~~~~~~~~~~ 202 (204)
T PRK13538 138 VALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDL-PVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChh-hhccCCceEEec
Confidence 99999999999999999999999999999999999999877899999999987 465666777766
No 216
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.7e-43 Score=388.26 Aligned_cols=230 Identities=24% Similarity=0.405 Sum_probs=192.9
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++||++.++.....+. +....+.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 312 ~~L~~~~l~~~y~~~~~~~~--~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~ 389 (623)
T PRK10261 312 PILQVRNLVTRFPLRSGLLN--RVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRID 389 (623)
T ss_pred ceEEEeeeEEEEcCCCcccc--ccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECC
Confidence 36999999998852110000 0001246999999999999999999999999999999999999999999999999874
Q ss_pred h-------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 010509 117 N-------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTR 186 (508)
Q Consensus 117 ~-------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 186 (508)
. ..++.++||+|++ .+++.+||.|++.+..... ....+++.+++++++|+.+||. +..++.+ +
T Consensus 390 ~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~--~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~-----~ 462 (623)
T PRK10261 390 TLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH--GLLPGKAAAARVAWLLERVGLLPEHAWRYP-----H 462 (623)
T ss_pred cCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHcCCCHHHhhCCc-----c
Confidence 2 2356799999997 5889999999998765432 1112445567889999999996 5566665 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
+|||||||||+||+||+.+|++|||||||+|||+.++.+++++|++++++ |.|||++|||++ .+.++|||+++|++|+
T Consensus 463 ~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~-~v~~~~dri~vl~~G~ 541 (623)
T PRK10261 463 EFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMA-VVERISHRVAVMYLGQ 541 (623)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999999875 899999999986 5778999999999999
Q ss_pred EEEEcChhhHH
Q 010509 266 PLYSGEASGAM 276 (508)
Q Consensus 266 iv~~G~~~~~~ 276 (508)
+++.|+++++.
T Consensus 542 iv~~g~~~~i~ 552 (623)
T PRK10261 542 IVEIGPRRAVF 552 (623)
T ss_pred EEEecCHHHHh
Confidence 99999998874
No 217
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-43 Score=333.51 Aligned_cols=187 Identities=48% Similarity=0.818 Sum_probs=165.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--CCcccEEEECCEeC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRINGRITYNGKPF 115 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--~~~~G~I~~~G~~~ 115 (508)
.++++|+++.++... .++.+|+|+|+++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++
T Consensus 3 ~l~~~~l~~~~~~~~---------~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~ 73 (192)
T cd03232 3 VLTWKNLNYTVPVKG---------GKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPL 73 (192)
T ss_pred EEEEeeeEEEecCCC---------CceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEeh
Confidence 588999999875210 1256999999999999999999999999999999999985 48999999999987
Q ss_pred ChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
....++.++|++|++.+++.+|++||+.+.... + +||||||||
T Consensus 74 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~------------------~LSgGe~qr 116 (192)
T cd03232 74 DKNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R------------------GLSVEQRKR 116 (192)
T ss_pred HHHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h------------------cCCHHHhHH
Confidence 655567899999999999999999999864211 0 599999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC-CeEEEEc
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE-GYPLYSG 270 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~-G~iv~~G 270 (508)
++||++|+.+|++++|||||+|||+.++..+++.|++++++|+|||++||+++..+.+.+|++++|++ |++++.|
T Consensus 117 v~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 117 LTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999999877999999999987446788999999998 9999875
No 218
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=8.5e-44 Score=394.40 Aligned_cols=219 Identities=28% Similarity=0.498 Sum_probs=187.1
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
-.++++|++|+|+.. +..+|+|+|++|+|||.+||+|+||||||||+|+|+|++.|++|+|.+||.+++
T Consensus 470 g~I~~~nvsf~y~~~-----------~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~ 538 (709)
T COG2274 470 GEIEFENVSFRYGPD-----------DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLN 538 (709)
T ss_pred ceEEEEEEEEEeCCC-----------CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHH
Confidence 369999999998732 246999999999999999999999999999999999999999999999999986
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHH-----HHHHHHcCCCcccccccCCCCCCc
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCA-----EAVMTELGLSECKNSLIGGPLTRG 187 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v-----~~~l~~lgL~~~~~~~vg~~~~~~ 187 (508)
. ..|+++|||+||+.++.. |++||+.++. | ..+.++..+.+ .+.++ .+..-.||.+| +...+
T Consensus 539 ~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~----p-~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~-E~G~~ 609 (709)
T COG2274 539 DIDLASLRRQVGYVLQDPFLFSG-SIRENIALGN----P-EATDEEIIEAAQLAGAHEFIE--NLPMGYDTPVG-EGGAN 609 (709)
T ss_pred hcCHHHHHhheeEEcccchhhcC-cHHHHHhcCC----C-CCCHHHHHHHHHHhCcHHHHH--hcccccccccc-cCCCC
Confidence 4 578999999999999975 9999998764 2 22333322221 12222 34556688887 56678
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||||||||++|||||+++|+||+||||||+||+.+...+.+.|+++.+ |+|+|+++|+++ ..+.|||+++|++|+++
T Consensus 610 LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~-~~T~I~IaHRl~--ti~~adrIiVl~~Gkiv 686 (709)
T COG2274 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ-GRTVIIIAHRLS--TIRSADRIIVLDQGKIV 686 (709)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc-CCeEEEEEccch--HhhhccEEEEccCCcee
Confidence 999999999999999999999999999999999999999999999864 699999999986 45789999999999999
Q ss_pred EEcChhhHHHH
Q 010509 268 YSGEASGAMNY 278 (508)
Q Consensus 268 ~~G~~~~~~~~ 278 (508)
.+|+.++..+.
T Consensus 687 ~~gs~~ell~~ 697 (709)
T COG2274 687 EQGSHEELLAQ 697 (709)
T ss_pred ccCCHHHHHHh
Confidence 99999988764
No 219
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-42 Score=344.32 Aligned_cols=221 Identities=22% Similarity=0.366 Sum_probs=184.8
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~ 111 (508)
+.++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+ |++|+|.++
T Consensus 2 ~~l~~~~v~~~~~-------------~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~ 68 (250)
T PRK14266 2 YRIEVENLNTYFD-------------DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLD 68 (250)
T ss_pred cEEEEEeEEEEeC-------------CeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEEC
Confidence 3588999998864 3569999999999999999999999999999999999863 389999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
|+++.. ..++.++|++|++.+++. |+.||+.+..... ...+++..++++.++++.+|+.+...... +..+
T Consensus 69 g~~i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~--~~~~~~~~~~~~~~~l~~~~l~~~l~~~~-~~~~ 144 (250)
T PRK14266 69 GVDIYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIH--GEDDEDFIEERVEESLKAAALWDEVKDKL-DKSA 144 (250)
T ss_pred CEEcccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhc--CCCCHHHHHHHHHHHHHHcCCchhHHHHH-hCCc
Confidence 998742 345689999999998885 9999998764322 11233445567889999999854321111 2334
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
..||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. .+...+|++++|++|+
T Consensus 145 ~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tiii~sh~~~-~~~~~~~~i~~l~~G~ 222 (250)
T PRK14266 145 LGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE-DYTIVIVTHNMQ-QATRVSKYTSFFLNGE 222 (250)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CCeEEEEECCHH-HHHhhcCEEEEEECCe
Confidence 58999999999999999999999999999999999999999999999965 799999999986 5778899999999999
Q ss_pred EEEEcChhhHH
Q 010509 266 PLYSGEASGAM 276 (508)
Q Consensus 266 iv~~G~~~~~~ 276 (508)
+++.|++++..
T Consensus 223 i~~~g~~~~~~ 233 (250)
T PRK14266 223 IIESGLTDQIF 233 (250)
T ss_pred EEEeCCHHHHH
Confidence 99999988763
No 220
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=6e-43 Score=338.76 Aligned_cols=203 Identities=24% Similarity=0.353 Sum_probs=178.0
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+..++++|++++++ ++.+++++|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++
T Consensus 9 ~~~l~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i 75 (214)
T PRK13543 9 PPLLAAHALAFSRN-------------EEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTA 75 (214)
T ss_pred cceEEEeeEEEecC-------------CceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEc
Confidence 34699999999864 35699999999999999999999999999999999999999999999999987
Q ss_pred Ch-hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 116 SN-QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 116 ~~-~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
.. ..++.++|++|++.+++.+|+.||+.+....+ .. ...+.++++++.++|.+..++.++ .|||||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~---~~---~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~q 144 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLH---GR---RAKQMPGSALAIVGLAGYEDTLVR-----QLSAGQKK 144 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhc---CC---cHHHHHHHHHHHcCChhhccCChh-----hCCHHHHH
Confidence 53 33457999999999999999999998865432 11 123456788999999887777664 89999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
|++||++++.+|++++|||||+|||+.++..+.+.|++++++|.|+|++|||++ .+.+++|++++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~-~~~~~~~~i~~l~~ 212 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAY-AAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChh-hhhhhcceEEEEee
Confidence 999999999999999999999999999999999999999888999999999986 58899999999863
No 221
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-42 Score=356.90 Aligned_cols=222 Identities=21% Similarity=0.368 Sum_probs=187.6
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~ 111 (508)
..++++|+++++.. +.+.+|+|+|++|++||+++|+|||||||||||++|+|+.. |++|+|.++
T Consensus 79 ~~i~~~nls~~y~~-----------~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~id 147 (329)
T PRK14257 79 NVFEIRNFNFWYMN-----------RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFL 147 (329)
T ss_pred ceEEEEeeEEEecC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 36999999998751 13569999999999999999999999999999999999874 579999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHHcCCCcccccccCCCC
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFT-EKEKIKCAEAVMTELGLSECKNSLIGGPL 184 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 184 (508)
|+++.. ..++.++||||++.+++ .|++||+.|+.... ..+ ++...+.++++++.++|.+..++.++ ..
T Consensus 148 G~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~---~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~-~~ 222 (329)
T PRK14257 148 GTNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNN---GINDRKILEKIVEKSLKSAALWDEVKDDLD-KA 222 (329)
T ss_pred CEEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhc---CCChHHHHHHHHHHHHHHcCCcchhhhhhh-CC
Confidence 999852 35678999999999886 79999999864321 122 22234557888999988544344443 44
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
...||||||||++|||||+.+|+||+|||||+|||+.+...+.+.|+++++ ++|||++||++. .+.+.+||+++|++|
T Consensus 223 ~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~-~~Tii~iTH~l~-~i~~~~Driivl~~G 300 (329)
T PRK14257 223 GNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK-KYSIIIVTHSMA-QAQRISDETVFFYQG 300 (329)
T ss_pred cccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc-CCEEEEEeCCHH-HHHHhCCEEEEEECC
Confidence 569999999999999999999999999999999999999999999999876 699999999986 567889999999999
Q ss_pred eEEEEcChhhHH
Q 010509 265 YPLYSGEASGAM 276 (508)
Q Consensus 265 ~iv~~G~~~~~~ 276 (508)
+++..|+++++.
T Consensus 301 ~i~e~g~~~~l~ 312 (329)
T PRK14257 301 WIEEAGETKTIF 312 (329)
T ss_pred EEEEeCCHHHHh
Confidence 999999999874
No 222
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-43 Score=345.18 Aligned_cols=215 Identities=29% Similarity=0.423 Sum_probs=173.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++. .+.+++|+|+++++||+++|+|||||||||||++|+|+.+|++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~------------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 69 (229)
T cd03254 2 EIEFENVNFSYDE------------KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRD 69 (229)
T ss_pred eEEEEEEEEecCC------------CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHH
Confidence 4789999998641 2459999999999999999999999999999999999999999999999988742
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc------CCCCCCc
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLI------GGPLTRG 187 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v------g~~~~~~ 187 (508)
..++.++|++|++.+++. |++||+.+.... ... +++++.++.+++.+..++.. -+..+++
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~-----~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 139 (229)
T cd03254 70 ISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPN-----ATD----EEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGN 139 (229)
T ss_pred cCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCC-----CCH----HHHHHHHHHhChHHHHHhCcccccCHhhcCCCc
Confidence 346679999999988875 999999865311 111 12333444444433222211 0123469
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||||||+||++|+.+|++++|||||+|||+.++..+++.|++++ +|+|||++||+++. +. .+|++++|++|+++
T Consensus 140 LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~~-~~d~i~~l~~g~~~ 216 (229)
T cd03254 140 LSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM-KGRTSIIIAHRLST-IK-NADKILVLDDGKII 216 (229)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-Hh-hCCEEEEEeCCeEE
Confidence 99999999999999999999999999999999999999999999996 48999999999864 54 59999999999999
Q ss_pred EEcChhhHHH
Q 010509 268 YSGEASGAMN 277 (508)
Q Consensus 268 ~~G~~~~~~~ 277 (508)
+.|+.++..+
T Consensus 217 ~~~~~~~~~~ 226 (229)
T cd03254 217 EEGTHDELLA 226 (229)
T ss_pred EeCCHHHHHh
Confidence 9988766543
No 223
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-42 Score=345.67 Aligned_cols=217 Identities=27% Similarity=0.422 Sum_probs=184.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECC-----
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG----- 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G----- 112 (508)
.++++|++++++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 10 ~i~~~~~~~~~~-------------~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 10 VFNISRLYLYIN-------------DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred heeeeeEEEecC-------------CceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 599999999875 46799999999999999999999999999999999999999887766665
Q ss_pred -EeCCh----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc----ccccccCCC
Q 010509 113 -KPFSN----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE----CKNSLIGGP 183 (508)
Q Consensus 113 -~~~~~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~vg~~ 183 (508)
+++.. ..++.++|++|++.+++.+|++||+.+...... ...+++.+++++++++.+++.+ ..++.
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---- 150 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHG--IKEKREIKKIVEECLRKVGLWKEVYDRLNSP---- 150 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHHcCCCccchhhhcCC----
Confidence 44321 346689999999999999999999998754321 1134455567889999999964 33433
Q ss_pred CCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 184 LTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
++.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++. .+..+||++++|++
T Consensus 151 -~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tiilvsh~~~-~~~~~~d~v~~l~~ 227 (257)
T PRK14246 151 -ASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN-EIAIVIVSHNPQ-QVARVADYVAFLYN 227 (257)
T ss_pred -cccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc-CcEEEEEECCHH-HHHHhCCEEEEEEC
Confidence 458999999999999999999999999999999999999999999999965 699999999986 57788999999999
Q ss_pred CeEEEEcChhhHH
Q 010509 264 GYPLYSGEASGAM 276 (508)
Q Consensus 264 G~iv~~G~~~~~~ 276 (508)
|+++..|++++..
T Consensus 228 g~i~~~g~~~~~~ 240 (257)
T PRK14246 228 GELVEWGSSNEIF 240 (257)
T ss_pred CEEEEECCHHHHH
Confidence 9999999987654
No 224
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-42 Score=347.23 Aligned_cols=218 Identities=21% Similarity=0.378 Sum_probs=181.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~G 112 (508)
.|+++|++++++ .+++|+|+|+++++||+++|+||||||||||+|+|+|+.+ |++|+|.++|
T Consensus 10 ~l~i~~v~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 10 VLRTENLNVYYG-------------SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred EEEEeeeEEEEC-------------CEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 699999999875 3569999999999999999999999999999999999875 4799999999
Q ss_pred EeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 113 KPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 113 ~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
+++.. ..++.++|++|++.+++ .|+.||+.+....+ ... .+..++++++++.+++.+..+... +..++
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---~~~-~~~~~~~~~~l~~~~l~~~l~~~~-~~~~~ 150 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---GYK-GDMDELVERSLRQAALWDEVKDKL-KQSGL 150 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCcccc-ccHHHHHHhhhhhc---Ccc-hHHHHHHHHHHHHhCchhhHHHHh-cCCcc
Confidence 98631 34567999999998888 49999998865332 111 223456677888888753211111 12345
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe----
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS---- 262 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~---- 262 (508)
+||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.++|||+++|+
T Consensus 151 ~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~-~~tvi~vtH~~~-~~~~~~d~v~~l~~~~~ 228 (264)
T PRK14243 151 SLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE-QYTIIIVTHNMQ-QAARVSDMTAFFNVELT 228 (264)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH-HHHHhCCEEEEEecccc
Confidence 8999999999999999999999999999999999999999999999976 589999999986 5789999999998
Q ss_pred -----CCeEEEEcChhhHH
Q 010509 263 -----EGYPLYSGEASGAM 276 (508)
Q Consensus 263 -----~G~iv~~G~~~~~~ 276 (508)
+|+++..|+++++.
T Consensus 229 ~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 229 EGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred cccccCceEEEeCCHHHHH
Confidence 89999999988774
No 225
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=6.2e-43 Score=341.19 Aligned_cols=209 Identities=22% Similarity=0.375 Sum_probs=176.3
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++++++ ++++++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 6 ~~i~~~~l~~~~~-------------~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~ 72 (225)
T PRK10247 6 PLLQLQNVGYLAG-------------DAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDIS 72 (225)
T ss_pred ceEEEeccEEeeC-------------CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcC
Confidence 3699999999874 357999999999999999999999999999999999999999999999999864
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCHH
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGG 191 (508)
. ..++.++|++|++.+++. |++||+.+....+. .. ...++++++++.+|+. +..++.+ +.||||
T Consensus 73 ~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~-----~~LS~G 141 (225)
T PRK10247 73 TLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRN---QQ--PDPAIFLDDLERFALPDTILTKNI-----AELSGG 141 (225)
T ss_pred cCCHHHHHhccEEEecccccccc-cHHHHHHhHHhhcC---CC--hHHHHHHHHHHHcCCChHHhcCCc-----ccCCHH
Confidence 2 345689999999988874 99999987543321 11 1234578899999996 4556555 489999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEe-CCeEEEE
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLS-EGYPLYS 269 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~-~G~iv~~ 269 (508)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |.|||++||+++. +. .+|++++|+ ++..+.+
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~-~~-~~d~i~~l~~~~~~~~~ 219 (225)
T PRK10247 142 EKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDE-IN-HADKVITLQPHAGEMQE 219 (225)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHH-HH-hCCEEEEEecccchHhh
Confidence 999999999999999999999999999999999999999999764 8999999999874 54 699999995 5555555
Q ss_pred cC
Q 010509 270 GE 271 (508)
Q Consensus 270 G~ 271 (508)
|.
T Consensus 220 ~~ 221 (225)
T PRK10247 220 AR 221 (225)
T ss_pred hh
Confidence 53
No 226
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=2.8e-43 Score=388.92 Aligned_cols=212 Identities=24% Similarity=0.396 Sum_probs=181.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.+. +++++|+|+|++++|||.+||+||||||||||+++|+|++ |++|+|.+||+++.+
T Consensus 349 ~i~~~~vsf~~~------------~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~ 415 (588)
T PRK11174 349 TIEAEDLEILSP------------DGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRE 415 (588)
T ss_pred eEEEEeeEEecc------------CCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEeccc
Confidence 699999997643 1357999999999999999999999999999999999999 899999999998854
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL-------SECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~ 186 (508)
.+|+.++||+|++.+|+. |++||+.++. + +.++++ ++++++..++ .+-.||.+|. ...
T Consensus 416 ~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~----~-~~~~ee----i~~al~~a~l~~~i~~lp~G~dT~vge-~G~ 484 (588)
T PRK11174 416 LDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGN----P-DASDEQ----LQQALENAWVSEFLPLLPQGLDTPIGD-QAA 484 (588)
T ss_pred CCHHHHHhheEEecCCCcCCCc-CHHHHhhcCC----C-CCCHHH----HHHHHHHhCHHHHHHhccccccccccc-CCC
Confidence 568899999999999985 9999998852 1 234433 3444444444 3455788874 356
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||||+++|+||+||||||+||+.++..+.+.|+++. +++|+|++||+++ ..+.+|+|++|++|++
T Consensus 485 ~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~-~~~TvIiItHrl~--~i~~aD~Iivl~~G~i 561 (588)
T PRK11174 485 GLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS-RRQTTLMVTHQLE--DLAQWDQIWVMQDGQI 561 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEecChH--HHHhCCEEEEEeCCeE
Confidence 899999999999999999999999999999999999999999999986 4799999999996 3466999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|+.++..
T Consensus 562 ~e~G~~~eL~ 571 (588)
T PRK11174 562 VQQGDYAELS 571 (588)
T ss_pred eecCCHHHHH
Confidence 9999988775
No 227
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=4.2e-43 Score=340.62 Aligned_cols=209 Identities=26% Similarity=0.480 Sum_probs=175.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++. ..+.+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~ 70 (220)
T cd03245 2 RIEFRNVSFSYPN-----------QEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQ 70 (220)
T ss_pred eEEEEEEEEEcCC-----------CCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHH
Confidence 3788999998641 12469999999999999999999999999999999999999999999999998642
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC------CCCCCc
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG------GPLTRG 187 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~ 187 (508)
..++.++|++|++.+++ .|+.||+.+... ... .+.++++++.+++.+..++.+. ...+.+
T Consensus 71 ~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 140 (220)
T cd03245 71 LDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAP-----LAD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGRG 140 (220)
T ss_pred CCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCC-----CCC----HHHHHHHHHHcCcHHHHHhccccccceecCCCcc
Confidence 24567999999998887 699999976421 111 2345678888898876665431 123458
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||||||||++||++|+.+|++|+|||||+|||+.++..+.+.|++++++ +|||++||++. .. +++|++++|++|+++
T Consensus 141 LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~-~tii~~sH~~~-~~-~~~d~v~~l~~g~i~ 217 (220)
T cd03245 141 LSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD-KTLIIITHRPS-LL-DLVDRIIVMDSGRIV 217 (220)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCC-CEEEEEeCCHH-HH-HhCCEEEEEeCCeEe
Confidence 9999999999999999999999999999999999999999999999765 89999999986 34 689999999999998
Q ss_pred EEc
Q 010509 268 YSG 270 (508)
Q Consensus 268 ~~G 270 (508)
+.|
T Consensus 218 ~~~ 220 (220)
T cd03245 218 ADG 220 (220)
T ss_pred ecC
Confidence 754
No 228
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=1e-42 Score=339.49 Aligned_cols=193 Identities=24% Similarity=0.354 Sum_probs=166.5
Q ss_pred cccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHH
Q 010509 61 IEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTE 140 (508)
Q Consensus 61 ~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 140 (508)
++++++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..+...+++.+||+|
T Consensus 32 ~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~--------~~~~~~~~~~~tv~e 103 (224)
T cd03220 32 VGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSL--------LGLGGGFNPELTGRE 103 (224)
T ss_pred cCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchh--------hcccccCCCCCcHHH
Confidence 346789999999999999999999999999999999999999999999999987531 111234567799999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010509 141 TMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220 (508)
Q Consensus 141 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~ 220 (508)
|+.+..... ..+.++.+++++++++.+||.+..++.++ +||||||||++||++|+.+|++++|||||+|||+
T Consensus 104 nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgG~~qrv~laral~~~p~llllDEP~~gLD~ 175 (224)
T cd03220 104 NIYLNGRLL---GLSRKEIDEKIDEIIEFSELGDFIDLPVK-----TYSSGMKARLAFAIATALEPDILLIDEVLAVGDA 175 (224)
T ss_pred HHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 998875432 12344455678889999999988887764 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 221 TIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 221 ~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
.++..+.+.|++++++|+|||++||+++ .+..++|++++|++|++++.|
T Consensus 176 ~~~~~~~~~l~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 176 AFQEKCQRRLRELLKQGKTVILVSHDPS-SIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 9999999999999877899999999986 567889999999999998765
No 229
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-44 Score=326.36 Aligned_cols=218 Identities=27% Similarity=0.461 Sum_probs=194.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||.++|+ ...+|++||++.+.|+++.|+|.|||||||+|+||.-+..|..|.|.+||+.+.-
T Consensus 6 ~l~v~dlHK~~G-------------~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~ 72 (256)
T COG4598 6 ALEVEDLHKRYG-------------EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRL 72 (256)
T ss_pred ceehhHHHhhcc-------------cchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEe
Confidence 577888877654 6789999999999999999999999999999999999999999999999987620
Q ss_pred -----------------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccccc
Q 010509 118 -----------------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLI 180 (508)
Q Consensus 118 -----------------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 180 (508)
.+|.+.|+|+|+..|.+.+||.||+.-+-.--+ +.++.+..++++.+|+.+|+.+.+|.+.
T Consensus 73 k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~YP 150 (256)
T COG4598 73 KRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADAYP 150 (256)
T ss_pred eeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhcCc
Confidence 235579999999999999999999976432111 3578888999999999999999887554
Q ss_pred CCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEE
Q 010509 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLL 260 (508)
Q Consensus 181 g~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~l 260 (508)
..|||||+||++|||||+.+|+++++|||||.|||.-.-++++.+++|+++|+|.+++||.+. ...+...+|+.
T Consensus 151 -----~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~-FAR~Vss~v~f 224 (256)
T COG4598 151 -----AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG-FARDVSSHVIF 224 (256)
T ss_pred -----cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehh-HHHhhhhheEE
Confidence 589999999999999999999999999999999999999999999999999999999999986 57788999999
Q ss_pred EeCCeEEEEcChhhHH
Q 010509 261 LSEGYPLYSGEASGAM 276 (508)
Q Consensus 261 L~~G~iv~~G~~~~~~ 276 (508)
|++|.|-..|+|+++.
T Consensus 225 Lh~G~iEE~G~P~qvf 240 (256)
T COG4598 225 LHQGKIEEEGPPEQVF 240 (256)
T ss_pred eecceecccCChHHHh
Confidence 9999999999998763
No 230
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1e-42 Score=379.18 Aligned_cols=219 Identities=26% Similarity=0.412 Sum_probs=187.8
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--CCcccEEEEC-----
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRINGRITYN----- 111 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--~~~~G~I~~~----- 111 (508)
|+++|++++++ ++.+|+|+||++++||+++|+||||||||||||+|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~ 67 (520)
T TIGR03269 1 IEVKNLTKKFD-------------GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCE 67 (520)
T ss_pred CEEEEEEEEEC-------------CeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccc
Confidence 46789998874 357999999999999999999999999999999999996 7999999997
Q ss_pred ------------------CEeC----------Ch----hccccEEEEecC-CCCCCCCCHHHHHHHHHHhcCCCCCCHHH
Q 010509 112 ------------------GKPF----------SN----QMTRNTGFVTQE-DVLSPYLTVTETMVFTALLQLPNSFTEKE 158 (508)
Q Consensus 112 ------------------G~~~----------~~----~~~~~i~yv~Q~-~~l~~~lTv~E~l~~~~~l~~~~~~~~~~ 158 (508)
|.++ .. ..++.++|++|+ +.+++.+||+|++.+..... ..+.++
T Consensus 68 ~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~---~~~~~~ 144 (520)
T TIGR03269 68 KCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI---GYEGKE 144 (520)
T ss_pred cccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc---CCCHHH
Confidence 2221 00 234679999997 67888899999998865432 223445
Q ss_pred HHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CC
Q 010509 159 KIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GG 237 (508)
Q Consensus 159 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g 237 (508)
.+++++++++.+||.+..++.++ +|||||||||+||+||+.+|++|||||||+|||+.++..+++.|+++++ .|
T Consensus 145 ~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g 219 (520)
T TIGR03269 145 AVGRAVDLIEMVQLSHRITHIAR-----DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASG 219 (520)
T ss_pred HHHHHHHHHHHcCChhhhhcCcc-----cCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcC
Confidence 56788999999999887776664 8999999999999999999999999999999999999999999999975 49
Q ss_pred CEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHHHH
Q 010509 238 RTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYF 279 (508)
Q Consensus 238 ~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~~f 279 (508)
+|||++|||+. .+.++||++++|++|++++.|++++..+.+
T Consensus 220 ~tviivtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 260 (520)
T TIGR03269 220 ISMVLTSHWPE-VIEDLSDKAIWLENGEIKEEGTPDEVVAVF 260 (520)
T ss_pred cEEEEEeCCHH-HHHHhcCEEEEEeCCEEeeecCHHHHHHHH
Confidence 99999999986 577899999999999999999988876654
No 231
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.7e-43 Score=322.84 Aligned_cols=221 Identities=28% Similarity=0.506 Sum_probs=195.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
++.+++++.+|+.. ...+|+|+|+++.+||.++++||||||||||||+++|..+|..|+|.+||++++.
T Consensus 3 ~l~~~~~sl~y~g~-----------~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~g 71 (259)
T COG4525 3 MLNVSHLSLSYEGK-----------PRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEG 71 (259)
T ss_pred eeehhheEEecCCc-----------chhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccC
Confidence 46677888877621 2559999999999999999999999999999999999999999999999999853
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVS 197 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 197 (508)
- ...-|.|+|++.++|-+|+.||+.|+.+++ ++++.++.+++.+.+..+||.+..++.+ -+|||||||||.
T Consensus 72 P-gaergvVFQ~~~LlPWl~~~dNvafgL~l~---Gi~k~~R~~~a~q~l~~VgL~~~~~~~i-----~qLSGGmrQRvG 142 (259)
T COG4525 72 P-GAERGVVFQNEALLPWLNVIDNVAFGLQLR---GIEKAQRREIAHQMLALVGLEGAEHKYI-----WQLSGGMRQRVG 142 (259)
T ss_pred C-CccceeEeccCccchhhHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHhCcccccccce-----EeecchHHHHHH
Confidence 1 223589999999999999999999998886 5678899999999999999999887766 499999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEe--CCeEEEEcChhh
Q 010509 198 IGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLS--EGYPLYSGEASG 274 (508)
Q Consensus 198 Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~--~G~iv~~G~~~~ 274 (508)
|||||+.+|++|+||||++.||.-+++++.++|.++.+ .|+.++++||+.++ ..-+++|+++|+ .||++..-+++-
T Consensus 143 iARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieE-AlflatrLvvlsp~pgRvv~~~~~df 221 (259)
T COG4525 143 IARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEE-ALFLATRLVVLSPGPGRVVERLPLDF 221 (259)
T ss_pred HHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHH-HHhhhheeEEecCCCceeeEecCCCH
Confidence 99999999999999999999999999999999999865 59999999999976 446799999999 689999888875
Q ss_pred HHHHH
Q 010509 275 AMNYF 279 (508)
Q Consensus 275 ~~~~f 279 (508)
...|-
T Consensus 222 ~rR~a 226 (259)
T COG4525 222 ARRYA 226 (259)
T ss_pred HHHhh
Confidence 54444
No 232
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.8e-43 Score=386.75 Aligned_cols=222 Identities=24% Similarity=0.373 Sum_probs=189.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC-
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS- 116 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~- 116 (508)
+|+++|+++++.... +..++|+||||++++||++||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 12 ~l~v~~l~~~y~~~~---------~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~ 82 (623)
T PRK10261 12 VLAVENLNIAFMQEQ---------QKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRR 82 (623)
T ss_pred eEEEeceEEEecCCC---------CceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecc
Confidence 699999999985210 1347999999999999999999999999999999999999999999999986431
Q ss_pred ------------h----hc-cccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc---
Q 010509 117 ------------N----QM-TRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE--- 174 (508)
Q Consensus 117 ------------~----~~-~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--- 174 (508)
. .. ++.+|||+|++ .+++.+||.||+.+...... ..+..+.+++++++++.+||.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~ 160 (623)
T PRK10261 83 RSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRIPEAQT 160 (623)
T ss_pred ccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChhh
Confidence 1 12 24799999997 68889999999998765421 2345566678899999999964
Q ss_pred ccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHh
Q 010509 175 CKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYY 253 (508)
Q Consensus 175 ~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~ 253 (508)
..++.+ .+|||||||||+||+||+.+|++|||||||++||+.++.+++++|++++++ |+|||++|||+. .+.+
T Consensus 161 ~~~~~~-----~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~-~~~~ 234 (623)
T PRK10261 161 ILSRYP-----HQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMG-VVAE 234 (623)
T ss_pred HHhCCC-----ccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHH
Confidence 345544 599999999999999999999999999999999999999999999999865 999999999986 5778
Q ss_pred hccEEEEEeCCeEEEEcChhhHH
Q 010509 254 MFHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 254 ~~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
+||||++|++|+++..|+++++.
T Consensus 235 ~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 235 IADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred hCCEEEEeeCCeecccCCHHHhh
Confidence 99999999999999999987763
No 233
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.1e-42 Score=351.19 Aligned_cols=223 Identities=22% Similarity=0.390 Sum_probs=183.6
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEEC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYN 111 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~ 111 (508)
..|+++|++++++ ++.+|+|+|+++++||+++|+|||||||||||++|+|+++ |++|+|.++
T Consensus 44 ~~l~i~nl~~~~~-------------~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~ 110 (305)
T PRK14264 44 AKLSVEDLDVYYG-------------DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELD 110 (305)
T ss_pred ceEEEEEEEEEeC-------------CeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3699999999875 3569999999999999999999999999999999999975 689999999
Q ss_pred CEeCCh------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC--C-------CCC-HHHHHHHHHHHHHHcCCCcc
Q 010509 112 GKPFSN------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP--N-------SFT-EKEKIKCAEAVMTELGLSEC 175 (508)
Q Consensus 112 G~~~~~------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~--~-------~~~-~~~~~~~v~~~l~~lgL~~~ 175 (508)
|+++.. ..++.++|++|++.+++ .||+||+.+....+.. . ..+ .+...++++++++.+++.+.
T Consensus 111 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 189 (305)
T PRK14264 111 GQDIYQDGVNLVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDE 189 (305)
T ss_pred CEEcccccccHHHHhhceEEEccCCcccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchh
Confidence 998742 24568999999998887 4999999986532100 0 011 22335678889999988532
Q ss_pred cccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhc
Q 010509 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMF 255 (508)
Q Consensus 176 ~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~ 255 (508)
.+... +..+++||||||||++||++|+.+|+||||||||+|||+.++..+.+.|++++++ .|||++||+++ .+.+++
T Consensus 190 ~~~~~-~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~-~tiiivtH~~~-~i~~~~ 266 (305)
T PRK14264 190 VNDRL-DDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEE-YTVVVVTHNMQ-QAARIS 266 (305)
T ss_pred hhHHh-cCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcC-CEEEEEEcCHH-HHHHhc
Confidence 22222 2345699999999999999999999999999999999999999999999999874 89999999986 577889
Q ss_pred cEE-EEEeCCeEEEEcChhhHH
Q 010509 256 HKV-LLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 256 D~v-~lL~~G~iv~~G~~~~~~ 276 (508)
|++ ++|++|+++..|++++..
T Consensus 267 d~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 267 DQTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred CEEEEEecCCEEEEeCCHHHHH
Confidence 996 578999999999987653
No 234
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=1.1e-42 Score=333.59 Aligned_cols=195 Identities=26% Similarity=0.408 Sum_probs=171.8
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
|+++|+++.++ ++.+|+|+|+++++||+++|+|+||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 l~i~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 67 (201)
T cd03231 1 LEADELTCERD-------------GRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQ 67 (201)
T ss_pred CEEEEEEEEeC-------------CceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc
Confidence 46789998864 3579999999999999999999999999999999999999999999999988642
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|++.+++.+|++||+.+.... . ..++++++++.+|+.+..++.+ +.||||||||
T Consensus 68 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~-----~----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qr 133 (201)
T cd03231 68 RDSIARGLLYLGHAPGIKTTLSVLENLRFWHAD-----H----SDEQVEEALARVGLNGFEDRPV-----AQLSAGQQRR 133 (201)
T ss_pred cHHhhhheEEeccccccCCCcCHHHHHHhhccc-----c----cHHHHHHHHHHcCChhhhcCch-----hhCCHHHHHH
Confidence 4567899999999999999999999875311 1 2346788999999988777665 4899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++.. ....+|+++++
T Consensus 134 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~-~~~~~~~~~~~ 198 (201)
T cd03231 134 VALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLG-LSEAGARELDL 198 (201)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchh-hhhccceeEec
Confidence 999999999999999999999999999999999999998779999999999864 66789999887
No 235
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.4e-43 Score=369.43 Aligned_cols=216 Identities=28% Similarity=0.457 Sum_probs=187.1
Q ss_pred CceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe
Q 010509 35 HPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP 114 (508)
Q Consensus 35 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~ 114 (508)
+++.++.+|+++.++. ++++++|+|+++++|+.+||+|+||||||||+++|+|+.+|++|+|.+||.+
T Consensus 317 ~~~ei~~~~l~~~y~~------------g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~ 384 (559)
T COG4988 317 PPIEISLENLSFRYPD------------GKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGID 384 (559)
T ss_pred CCceeeecceEEecCC------------CCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCcc
Confidence 4567777899999762 3489999999999999999999999999999999999999999999999998
Q ss_pred CCh----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc------ccccccCCCC
Q 010509 115 FSN----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE------CKNSLIGGPL 184 (508)
Q Consensus 115 ~~~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~------~~~~~vg~~~ 184 (508)
..+ .++++++||+|++.+++. |++||+.++.. ..+++ .+.++++..||.+ -.|+.+| +.
T Consensus 385 l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~-----~~s~e----~i~~al~~a~l~~~v~~p~GLdt~ig-e~ 453 (559)
T COG4988 385 LRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARP-----DASDE----EIIAALDQAGLLEFVPKPDGLDTVIG-EG 453 (559)
T ss_pred ccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCC-----cCCHH----HHHHHHHHhcHHHhhcCCCcccchhc-cC
Confidence 753 678999999999999986 99999998631 22333 3556667666654 3466776 45
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
.++|||||+|||++||||+.+++++++||||++||.++.+.|++.|.+++++ +|++++||++.. + .-+|+|++|++|
T Consensus 454 G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~-ktvl~itHrl~~-~-~~~D~I~vld~G 530 (559)
T COG4988 454 GAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQ-KTVLVITHRLED-A-ADADRIVVLDNG 530 (559)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhC-CeEEEEEcChHH-H-hcCCEEEEecCC
Confidence 6789999999999999999999999999999999999999999999999875 999999999863 4 558999999999
Q ss_pred eEEEEcChhhHH
Q 010509 265 YPLYSGEASGAM 276 (508)
Q Consensus 265 ~iv~~G~~~~~~ 276 (508)
+++..|..++..
T Consensus 531 ~l~~~g~~~~L~ 542 (559)
T COG4988 531 RLVEQGTHEELS 542 (559)
T ss_pred ceeccCCHHHHh
Confidence 999999998874
No 236
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.1e-43 Score=378.22 Aligned_cols=219 Identities=28% Similarity=0.489 Sum_probs=189.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++|+|++|.|+.+ ++.+||+|+||+++|||.+||+||||+||||+.++|-.++.|++|+|.+||+|+.+
T Consensus 465 ~IeF~~VsFaYP~R----------p~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~ 534 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTR----------PDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISD 534 (716)
T ss_pred eEEEEEeeeecCCC----------CCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhh
Confidence 69999999999843 25789999999999999999999999999999999999999999999999999864
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHH---HcCCCcccccccCCCCCCccCH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMT---ELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~---~lgL~~~~~~~vg~~~~~~LSG 190 (508)
.+|++||+|.|||.||.. ||+||+.|+.. ..++++..+.++..-. ..++.+-.||.+| ++..+|||
T Consensus 535 ~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~-----~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VG-EkG~qLSG 607 (716)
T KOG0058|consen 535 INHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLD-----NATDEEIEAAAKMANAHEFITNFPDGYNTVVG-EKGSQLSG 607 (716)
T ss_pred cCHHHHHHHeeeeeccceeecc-cHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHHhCccccccccC-Cccccccc
Confidence 468899999999999986 99999999753 2344444333322211 1367888999998 55668999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
|||||++|||||++||+||||||.||+||+.+...+.+.|.++.+ ++|||++.|.++. + +.+|+|+++++|++++.|
T Consensus 608 GQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~-~rTVlvIAHRLST-V-~~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 608 GQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ-GRTVLVIAHRLST-V-RHADQIVVIDKGRVVEMG 684 (716)
T ss_pred hHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc-CCeEEEEehhhhH-h-hhccEEEEEcCCeEEecc
Confidence 999999999999999999999999999999999999999999875 4999999999973 4 679999999999999999
Q ss_pred ChhhHH
Q 010509 271 EASGAM 276 (508)
Q Consensus 271 ~~~~~~ 276 (508)
+-++..
T Consensus 685 ~h~eLl 690 (716)
T KOG0058|consen 685 THDELL 690 (716)
T ss_pred cHHHHh
Confidence 877664
No 237
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-43 Score=342.87 Aligned_cols=212 Identities=27% Similarity=0.467 Sum_probs=171.1
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++. ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~------------~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~ 68 (236)
T cd03253 1 IEFENVTFAYDP------------GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREV 68 (236)
T ss_pred CEEEEEEEEeCC------------CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhC
Confidence 467899887641 2469999999999999999999999999999999999999999999999998742
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCCCCCc
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK-------NSLIGGPLTRG 187 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~ 187 (508)
..++.++|++|++.+++ .|++||+.+... ..+..+ +.+.++..++.+.. ++.. +..++.
T Consensus 69 ~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~-----~~~~~~----~~~~~~~~~l~~~~~~l~~~~~~~~-~~~~~~ 137 (236)
T cd03253 69 TLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRP-----DATDEE----VIEAAKAAQIHDKIMRFPDGYDTIV-GERGLK 137 (236)
T ss_pred CHHHHHhhEEEECCCChhhc-chHHHHHhhcCC-----CCCHHH----HHHHHHHcCcHHHHHhccccccchh-hcCCCc
Confidence 34567999999998886 699999987531 112211 22223333332221 1111 123468
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ |+|||++||+++. +. .+|++++|++|+++
T Consensus 138 LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tiii~sh~~~~-~~-~~d~~~~l~~g~i~ 214 (236)
T cd03253 138 LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK-GRTTIVIAHRLST-IV-NADKIIVLKDGRIV 214 (236)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-HH-hCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999987 9999999999874 54 49999999999999
Q ss_pred EEcChhhHH
Q 010509 268 YSGEASGAM 276 (508)
Q Consensus 268 ~~G~~~~~~ 276 (508)
..|++++..
T Consensus 215 ~~~~~~~~~ 223 (236)
T cd03253 215 ERGTHEELL 223 (236)
T ss_pred eeCCHHHHh
Confidence 999877654
No 238
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.1e-44 Score=332.19 Aligned_cols=220 Identities=24% Similarity=0.428 Sum_probs=198.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++ .+.+|+|+|+++++|.+++++|||||||||||.+++.+++.++|+|+++|.++..
T Consensus 1 MI~i~nv~K~y~-------------~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~ 67 (252)
T COG4604 1 MITIENVSKSYG-------------TKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTS 67 (252)
T ss_pred CeeehhhhHhhC-------------CEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeeccc
Confidence 367888888765 6889999999999999999999999999999999999999999999999999853
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
++.+.++.+-|+......+||+|-+.|+..- ..++...++.+..+++.++.++|++..|+... +||||||
T Consensus 68 ~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfP-YSqGRlt~eD~~~I~~aieyl~L~~l~dryLd-----~LSGGQr 141 (252)
T COG4604 68 TPSKELAKKLSILKQENHINSRLTVRDLVGFGRFP-YSQGRLTKEDRRIINEAIEYLHLEDLSDRYLD-----ELSGGQR 141 (252)
T ss_pred CChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCc-ccCCCCchHHHHHHHHHHHHhcccchHHHhHH-----hcccchh
Confidence 5677899999999999999999999997422 11233456677889999999999999998875 9999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
||.-||+.++.+.+.++||||.++||-..+.++|+.|++++++ |+||+++.||.+ .+..++|+|+-|++|+++..|++
T Consensus 142 QRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDIN-fAS~YsD~IVAlK~G~vv~~G~~ 220 (252)
T COG4604 142 QRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDIN-FASCYSDHIVALKNGKVVKQGSP 220 (252)
T ss_pred hhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEeccc-HHHhhhhheeeecCCEEEecCCH
Confidence 9999999999999999999999999999999999999999976 999999999997 57788999999999999999999
Q ss_pred hhHHH
Q 010509 273 SGAMN 277 (508)
Q Consensus 273 ~~~~~ 277 (508)
+++.+
T Consensus 221 ~eii~ 225 (252)
T COG4604 221 DEIIQ 225 (252)
T ss_pred HHhcC
Confidence 98753
No 239
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.5e-42 Score=343.11 Aligned_cols=217 Identities=21% Similarity=0.316 Sum_probs=182.7
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEE
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITY 110 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~ 110 (508)
+..|+++|++++++ ++++|+|+|+++++||+++|+|+||||||||+++|+|+..| ++|+|.+
T Consensus 14 ~~~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~ 80 (265)
T PRK14252 14 QQKSEVNKLNFYYG-------------GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIIL 80 (265)
T ss_pred CceEEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEE
Confidence 45699999999875 35799999999999999999999999999999999999864 7999999
Q ss_pred CCEeCC--------hhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCC-HHHHHHHHHHHHHHcCCCc----ccc
Q 010509 111 NGKPFS--------NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFT-EKEKIKCAEAVMTELGLSE----CKN 177 (508)
Q Consensus 111 ~G~~~~--------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~-~~~~~~~v~~~l~~lgL~~----~~~ 177 (508)
+|+++. ...++.++|++|++.+++. |++||+.+..... ... +...+++++++++.+++.+ ..+
T Consensus 81 ~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~ 156 (265)
T PRK14252 81 HPDNVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIR---GVKRRSILEERVENALRNAALWDEVKDRLG 156 (265)
T ss_pred cCccccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHc---CCChHHHHHHHHHHHHHHcCCchhhhHHHh
Confidence 997653 1345679999999999886 9999998765322 111 2223456788888888742 233
Q ss_pred cccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccE
Q 010509 178 SLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 178 ~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~ 257 (508)
+. ...||||||||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++ .+.+++|+
T Consensus 157 ~~-----~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~tiiivth~~~-~~~~~~d~ 229 (265)
T PRK14252 157 DL-----AFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN-KVTILIVTHNMQ-QAARVSDY 229 (265)
T ss_pred CC-----cccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCEEEEEecCHH-HHHHhCCE
Confidence 33 358999999999999999999999999999999999999999999999976 689999999986 57789999
Q ss_pred EEEEeCCeEEEEcChhhHH
Q 010509 258 VLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 258 v~lL~~G~iv~~G~~~~~~ 276 (508)
+++|++|+++..|+.++..
T Consensus 230 i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 230 TAYMYMGELIEFGATDTIF 248 (265)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999987653
No 240
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.3e-42 Score=377.11 Aligned_cols=222 Identities=23% Similarity=0.391 Sum_probs=187.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-----cccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-----INGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-----~~G~I~~~G 112 (508)
+++++|++++++... ..+.+|+|+||++++||+++|+||||||||||+|+|+|+++| ++|+|.++|
T Consensus 5 ~l~~~~l~~~~~~~~---------~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g 75 (529)
T PRK15134 5 LLAIENLSVAFRQQQ---------TVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHG 75 (529)
T ss_pred eEEEeceEEEecCCC---------CceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECC
Confidence 699999999975210 125799999999999999999999999999999999999875 799999999
Q ss_pred EeCCh----h---cc-ccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc---cccc
Q 010509 113 KPFSN----Q---MT-RNTGFVTQEDV--LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC---KNSL 179 (508)
Q Consensus 113 ~~~~~----~---~~-~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~ 179 (508)
+++.. . .+ +.+||++|++. +++.+|+.|++.+...... ..+..+.+++++++++.+||.+. .++.
T Consensus 76 ~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 153 (529)
T PRK15134 76 ESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTDY 153 (529)
T ss_pred EecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhhC
Confidence 98742 1 22 47999999974 6777899999876543211 23445566788999999999763 4655
Q ss_pred cCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEE
Q 010509 180 IGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKV 258 (508)
Q Consensus 180 vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v 258 (508)
+ .+|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++|||+. .+..+|||+
T Consensus 154 ~-----~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~dri 227 (529)
T PRK15134 154 P-----HQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLS-IVRKLADRV 227 (529)
T ss_pred C-----cccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHH-HHHHhcCEE
Confidence 5 499999999999999999999999999999999999999999999999865 899999999986 567889999
Q ss_pred EEEeCCeEEEEcChhhHH
Q 010509 259 LLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 259 ~lL~~G~iv~~G~~~~~~ 276 (508)
++|++|++++.|+++++.
T Consensus 228 ~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 228 AVMQNGRCVEQNRAATLF 245 (529)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999887653
No 241
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=2.1e-42 Score=413.15 Aligned_cols=224 Identities=27% Similarity=0.392 Sum_probs=200.7
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
...|+++||++.++. +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++
T Consensus 926 ~~~L~I~nLsK~y~~-----------~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI 994 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEP-----------SGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI 994 (2272)
T ss_pred CceEEEEeEEEEecC-----------CCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEEC
Confidence 347999999998741 136799999999999999999999999999999999999999999999999998
Q ss_pred Ch---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 116 SN---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 116 ~~---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
.. ..++.+||++|++.+++.+||+|++.+.++++ +.+.++.+++++++++.+||.+.+|+.++ +|||||
T Consensus 995 ~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lk---g~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~LSGGq 1066 (2272)
T TIGR01257 995 ETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK---GRSWEEAQLEMEAMLEDTGLHHKRNEEAQ-----DLSGGM 1066 (2272)
T ss_pred cchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----hCCHHH
Confidence 53 35678999999999999999999999987654 23344556788999999999988887765 899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
||||+||+||+.+|++++|||||+|||+.++..++++|++++ +|+|||++||+++ ++..++||+++|++|+++..|++
T Consensus 1067 KQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~-~g~TIIltTHdmd-ea~~laDrI~iL~~GkL~~~Gs~ 1144 (2272)
T TIGR01257 1067 QRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR-SGRTIIMSTHHMD-EADLLGDRIAIISQGRLYCSGTP 1144 (2272)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999999999999995 5999999999986 57789999999999999999999
Q ss_pred hhHHHHHH
Q 010509 273 SGAMNYFA 280 (508)
Q Consensus 273 ~~~~~~f~ 280 (508)
+++.+.|.
T Consensus 1145 ~~Lk~~~g 1152 (2272)
T TIGR01257 1145 LFLKNCFG 1152 (2272)
T ss_pred HHHHHhcC
Confidence 99987764
No 242
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=7.8e-43 Score=391.82 Aligned_cols=211 Identities=27% Similarity=0.414 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++|+|+. .++++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||+++.+
T Consensus 451 ~I~~~nvsf~Y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 519 (686)
T TIGR03797 451 AIEVDRVTFRYRP-----------DGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAG 519 (686)
T ss_pred eEEEEEEEEEcCC-----------CCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCc
Confidence 6999999999852 13579999999999999999999999999999999999999999999999999853
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~ 186 (508)
.+|+.+|||+|++.+++. |++||+.++.. .++ +++.++++..|+.+ -.||.+|+ ...
T Consensus 520 ~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~------~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ige-~G~ 587 (686)
T TIGR03797 520 LDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP------LTL----DEAWEAARMAGLAEDIRAMPMGMHTVISE-GGG 587 (686)
T ss_pred CCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC------CCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCC
Confidence 578899999999999975 99999987521 233 33556677666654 34777773 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||||+++|++|+||||||+||+.+..++.+.|+++ ++|+|++||+++. + +.+|+|++|++|++
T Consensus 588 ~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~---~~T~IiItHr~~~-i-~~~D~Iivl~~G~i 662 (686)
T TIGR03797 588 TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL---KVTRIVIAHRLST-I-RNADRIYVLDAGRV 662 (686)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh---CCeEEEEecChHH-H-HcCCEEEEEECCEE
Confidence 89999999999999999999999999999999999999999999887 5799999999863 4 66999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|+.++..
T Consensus 663 v~~G~~~~Ll 672 (686)
T TIGR03797 663 VQQGTYDELM 672 (686)
T ss_pred EEECCHHHHH
Confidence 9999988775
No 243
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=1.6e-42 Score=343.34 Aligned_cols=199 Identities=27% Similarity=0.441 Sum_probs=174.5
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHHHH
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYLTVTET 141 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~E~ 141 (508)
+|+|+||++++||+++|+||||||||||+++|+|+.+ .+|+|.++|+++.. ..++.++|++|++.+++.+|+.||
T Consensus 11 ~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~~n 89 (248)
T PRK03695 11 RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMPVFQY 89 (248)
T ss_pred eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecccCccCCCccHHHH
Confidence 7999999999999999999999999999999999985 49999999998743 334579999999888888999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhh-------CCCEEEEeCC
Q 010509 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILI-------NPSLLFLDEP 214 (508)
Q Consensus 142 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~-------~P~illLDEP 214 (508)
+.+.... ..+.++..++++++++.+||.+..++.+ +.||||||||++||++|+. +|++++||||
T Consensus 90 l~~~~~~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEP 160 (248)
T PRK03695 90 LTLHQPD----KTRTEAVASALNEVAEALGLDDKLGRSV-----NQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEP 160 (248)
T ss_pred HHhcCcc----CCCcHHHHHHHHHHHHHcCCHhHhcCCc-----ccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCC
Confidence 9875321 1223344567889999999988777665 4899999999999999998 6799999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 215 TSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 215 tsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
|+|||+.++..+.+.|++++++|+|||++||+++ .+.+++|++++|++|+++..|++++.
T Consensus 161 t~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 220 (248)
T PRK03695 161 MNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLN-HTLRHADRVWLLKQGKLLASGRRDEV 220 (248)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999877999999999986 57789999999999999999988765
No 244
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-41 Score=340.40 Aligned_cols=224 Identities=23% Similarity=0.321 Sum_probs=188.6
Q ss_pred eeEEEEeEEEEEeccccc-------cCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEE
Q 010509 37 VTLKFEDIVYKIKMKKGF-------YGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRIT 109 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~-------~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~ 109 (508)
+.++++|+++.++..... +........+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~ 82 (264)
T PRK13546 3 VSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVD 82 (264)
T ss_pred ceEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEE
Confidence 578999999988753211 0001122356799999999999999999999999999999999999999999999
Q ss_pred ECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC
Q 010509 110 YNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 110 ~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 189 (508)
++|+ +++++|+..+.+.+|+.||+.+..... ..+.++..+.++++++.+++.+..++.+ +.||
T Consensus 83 ~~g~---------~~~~~~~~~~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~LS 145 (264)
T PRK13546 83 RNGE---------VSVIAISAGLSGQLTGIENIEFKMLCM---GFKRKEIKAMTPKIIEFSELGEFIYQPV-----KKYS 145 (264)
T ss_pred ECCE---------EeEEecccCCCCCCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCc-----ccCC
Confidence 9985 457778877888899999998764332 2234455566788899999988777665 4899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||++||++|+.+|++|+|||||+|||+.++..+++.|+++++.|+|||++||++. .+.+.+|++++|++|+++..
T Consensus 146 ~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~-~i~~~~d~i~~l~~G~i~~~ 224 (264)
T PRK13546 146 SGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLG-QVRQFCTKIAWIEGGKLKDY 224 (264)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHHHcCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999878999999999986 57788999999999999999
Q ss_pred cChhhHHHH
Q 010509 270 GEASGAMNY 278 (508)
Q Consensus 270 G~~~~~~~~ 278 (508)
|++++..+-
T Consensus 225 g~~~~~~~~ 233 (264)
T PRK13546 225 GELDDVLPK 233 (264)
T ss_pred CCHHHHHHH
Confidence 998876553
No 245
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.4e-42 Score=376.19 Aligned_cols=223 Identities=22% Similarity=0.359 Sum_probs=187.6
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEEC-CEe-
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYN-GKP- 114 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~-G~~- 114 (508)
.+|+++|++++++.. +.+.+.+|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++ |.+
T Consensus 278 ~~l~~~~l~~~~~~~--------~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~ 349 (520)
T TIGR03269 278 PIIKVRNVSKRYISV--------DRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEW 349 (520)
T ss_pred ceEEEeccEEEeccC--------CCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcc
Confidence 369999999987410 0013569999999999999999999999999999999999999999999996 532
Q ss_pred --CCh-------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-----cccccc
Q 010509 115 --FSN-------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-----CKNSLI 180 (508)
Q Consensus 115 --~~~-------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~v 180 (508)
+.. ..++.++|++|++.+++.+||.|++.+..... .+.++.+++++++++.+||.+ ..++.+
T Consensus 350 ~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 425 (520)
T TIGR03269 350 VDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLE----LPDELARMKAVITLKMVGFDEEKAEEILDKYP 425 (520)
T ss_pred ccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcC----CCHHHHHHHHHHHHHhCCCCCccchhhhhCCh
Confidence 211 23457999999999999999999998754321 223334567889999999975 345555
Q ss_pred CCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEE
Q 010509 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVL 259 (508)
Q Consensus 181 g~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~ 259 (508)
++|||||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++ |.|||++|||+. .+.++||+++
T Consensus 426 -----~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~d~i~ 499 (520)
T TIGR03269 426 -----DELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMD-FVLDVCDRAA 499 (520)
T ss_pred -----hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHH-HHHHhCCEEE
Confidence 599999999999999999999999999999999999999999999999764 899999999986 5778999999
Q ss_pred EEeCCeEEEEcChhhHHH
Q 010509 260 LLSEGYPLYSGEASGAMN 277 (508)
Q Consensus 260 lL~~G~iv~~G~~~~~~~ 277 (508)
+|++|+++..|+++++.+
T Consensus 500 ~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 500 LMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred EEECCEEEEECCHHHHHh
Confidence 999999999999877643
No 246
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.1e-42 Score=377.59 Aligned_cols=222 Identities=21% Similarity=0.365 Sum_probs=187.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-CcccEEEECCEeCC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-RINGRITYNGKPFS 116 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-~~~G~I~~~G~~~~ 116 (508)
.|+++|++++++.. +++.+|+|+||++++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.
T Consensus 259 ~l~~~~l~~~~~~~----------~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~ 328 (506)
T PRK13549 259 ILEVRNLTAWDPVN----------PHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVK 328 (506)
T ss_pred eEEEecCccccccc----------cccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECC
Confidence 58999999876310 13469999999999999999999999999999999999998 59999999999874
Q ss_pred h-----hccccEEEEecCC---CCCCCCCHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 010509 117 N-----QMTRNTGFVTQED---VLSPYLTVTETMVFTALLQLPN--SFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLT 185 (508)
Q Consensus 117 ~-----~~~~~i~yv~Q~~---~l~~~lTv~E~l~~~~~l~~~~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~ 185 (508)
. ..++.++|++|++ .+++.+||.||+.+........ ..++++.+++++++++.+|+. +..++.++
T Consensus 329 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 404 (506)
T PRK13549 329 IRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIA---- 404 (506)
T ss_pred CCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccc----
Confidence 2 2345799999985 4788899999998753211110 012334456789999999996 56777665
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+.++|++++++|+|||++|||++ .+.++||++++|++|+
T Consensus 405 -~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~-~~~~~~d~v~~l~~G~ 482 (506)
T PRK13549 405 -RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELP-EVLGLSDRVLVMHEGK 482 (506)
T ss_pred -cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999888999999999986 5778999999999999
Q ss_pred EEEEcChhhH
Q 010509 266 PLYSGEASGA 275 (508)
Q Consensus 266 iv~~G~~~~~ 275 (508)
++..|+++++
T Consensus 483 i~~~~~~~~~ 492 (506)
T PRK13549 483 LKGDLINHNL 492 (506)
T ss_pred EEEEeccccC
Confidence 9999987764
No 247
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.1e-42 Score=324.17 Aligned_cols=170 Identities=33% Similarity=0.557 Sum_probs=155.5
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ .+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~ 67 (173)
T cd03230 1 IEVRNLSKRYG-------------KKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKE 67 (173)
T ss_pred CEEEEEEEEEC-------------CeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccc
Confidence 46789988764 2469999999999999999999999999999999999999999999999998743
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|++.+++.+|+.||+. ||||||||
T Consensus 68 ~~~~~~~i~~~~q~~~~~~~~tv~~~~~--------------------------------------------LS~G~~qr 103 (173)
T cd03230 68 PEEVKRRIGYLPEEPSLYENLTVRENLK--------------------------------------------LSGGMKQR 103 (173)
T ss_pred hHhhhccEEEEecCCccccCCcHHHHhh--------------------------------------------cCHHHHHH
Confidence 34568999999999999899999863 89999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||+++ .+.+.+|++++|++|++
T Consensus 104 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~-~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 104 LALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE-EAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH-HHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999999877999999999986 57788999999999974
No 248
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=2.1e-42 Score=377.43 Aligned_cols=230 Identities=29% Similarity=0.506 Sum_probs=189.6
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++++++...... .++.+++.+|+|+||++++||+++|+||||||||||+|+|+|+++ ++|+|.++|+++.
T Consensus 274 ~~l~~~~l~~~~~~~~~~~--~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~ 350 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGIL--KRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLH 350 (529)
T ss_pred CcccccCcEEEeecCcccc--ccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcc
Confidence 3699999999875210000 000013579999999999999999999999999999999999985 8999999998874
Q ss_pred h-------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCC
Q 010509 117 N-------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTR 186 (508)
Q Consensus 117 ~-------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~ 186 (508)
. ..++.++|++|++ .+++.+||.||+.+....+.. ..+..+.+++++++++.+||. +..++.+ +
T Consensus 351 ~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~ 424 (529)
T PRK15134 351 NLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPETRHRYP-----A 424 (529)
T ss_pred ccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHHHhcCC-----c
Confidence 2 1246799999996 488889999999886533211 123344556788999999997 4567665 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
+|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++ |+|||++|||+. .+.++||++++|++|+
T Consensus 425 ~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~-~~~~~~d~i~~l~~G~ 503 (529)
T PRK15134 425 EFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGE 503 (529)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHH-HHHHhcCeEEEEECCE
Confidence 89999999999999999999999999999999999999999999999875 899999999986 5778999999999999
Q ss_pred EEEEcChhhHH
Q 010509 266 PLYSGEASGAM 276 (508)
Q Consensus 266 iv~~G~~~~~~ 276 (508)
++..|+++++.
T Consensus 504 i~~~~~~~~~~ 514 (529)
T PRK15134 504 VVEQGDCERVF 514 (529)
T ss_pred EEEEcCHHHHh
Confidence 99999987763
No 249
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=9.1e-43 Score=384.35 Aligned_cols=215 Identities=22% Similarity=0.363 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++|+++. +++++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||+++++
T Consensus 341 ~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~ 409 (582)
T PRK11176 341 DIEFRNVTFTYPG-----------KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRD 409 (582)
T ss_pred eEEEEEEEEecCC-----------CCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhh
Confidence 5999999999752 13579999999999999999999999999999999999999999999999999854
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-------ECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~ 186 (508)
.+++.++||+|++.+++. |++||+.++. +...+++ +++++++..|+. +-.||.+|+ ..+
T Consensus 410 ~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~~~~~----~i~~al~~~~l~~~i~~lp~Gldt~ig~-~g~ 479 (582)
T PRK11176 410 YTLASLRNQVALVSQNVHLFND-TIANNIAYAR----TEQYSRE----QIEEAARMAYAMDFINKMDNGLDTVIGE-NGV 479 (582)
T ss_pred cCHHHHHhhceEEccCceeecc-hHHHHHhcCC----CCCCCHH----HHHHHHHHhCcHHHHHhcccccCceeCC-CCC
Confidence 467889999999999985 9999998752 1122333 355566665543 445788874 356
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||||+++|++++||||||+||+.++..+++.|+++.+ ++|+|++||+++ ..+.||+|++|++|++
T Consensus 480 ~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~-~~tvI~VtHr~~--~~~~~D~Ii~l~~g~i 556 (582)
T PRK11176 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLS--TIEKADEILVVEDGEI 556 (582)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999854 699999999985 4567999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|+.++..
T Consensus 557 ~e~g~~~~l~ 566 (582)
T PRK11176 557 VERGTHAELL 566 (582)
T ss_pred EEeCCHHHHH
Confidence 9999988775
No 250
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.9e-42 Score=330.61 Aligned_cols=192 Identities=30% Similarity=0.483 Sum_probs=165.0
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC--CCCcccEEEECCEeCC
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR--LGRINGRITYNGKPFS 116 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~--~~~~~G~I~~~G~~~~ 116 (508)
++++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|. ..|++|+|.++|+++.
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~ 67 (200)
T cd03217 1 LEIKDLHVSVG-------------GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT 67 (200)
T ss_pred CeEEEEEEEeC-------------CEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECC
Confidence 46789998864 35699999999999999999999999999999999998 4789999999999875
Q ss_pred h----h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 117 N----Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 117 ~----~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
. . .++.++|++|++.+++..|+++++. . ..+.||||
T Consensus 68 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l~----------------------------------~-----~~~~LS~G 108 (200)
T cd03217 68 DLPPEERARLGIFLAFQYPPEIPGVKNADFLR----------------------------------Y-----VNEGFSGG 108 (200)
T ss_pred cCCHHHHhhCcEEEeecChhhccCccHHHHHh----------------------------------h-----ccccCCHH
Confidence 3 1 2345999999998888888877650 0 01379999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHh-hccEEEEEeCCeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYY-MFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~-~~D~v~lL~~G~iv~~G 270 (508)
||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+.+ .+|++++|++|+++..|
T Consensus 109 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~-~~~~~~~d~i~~l~~G~i~~~~ 187 (200)
T cd03217 109 EKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQR-LLDYIKPDRVHVLYDGRIVKSG 187 (200)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999877899999999987 4656 79999999999999999
Q ss_pred ChhhHHHHHHhcCC
Q 010509 271 EASGAMNYFASIGY 284 (508)
Q Consensus 271 ~~~~~~~~f~~~g~ 284 (508)
+.+ +.++|.+.||
T Consensus 188 ~~~-~~~~~~~~~~ 200 (200)
T cd03217 188 DKE-LALEIEKKGY 200 (200)
T ss_pred cHH-HHhhhccccC
Confidence 544 6566654443
No 251
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=2.8e-42 Score=329.95 Aligned_cols=194 Identities=26% Similarity=0.409 Sum_probs=167.8
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++.++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 67 (198)
T TIGR01189 1 LAARNLACSRG-------------ERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQ 67 (198)
T ss_pred CEEEEEEEEEC-------------CEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccc
Confidence 46789988764 3579999999999999999999999999999999999999999999999998643
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|++.+++.+|+.||+.+....+. . + +++++++++.+|+.+..++.++ .||||||||
T Consensus 68 ~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qr 135 (198)
T TIGR01189 68 RDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPAA-----QLSAGQQRR 135 (198)
T ss_pred hHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCChh-----hcCHHHHHH
Confidence 345689999999989998999999987654321 1 1 2457889999999988777664 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEE
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLL 260 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~l 260 (508)
++||++++.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++.. ..+++++.
T Consensus 136 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~---~~~~~~~~ 197 (198)
T TIGR01189 136 LALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLG---LVEARELR 197 (198)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccc---ccceEEee
Confidence 999999999999999999999999999999999999998789999999999864 23577654
No 252
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=3.6e-42 Score=341.37 Aligned_cols=202 Identities=26% Similarity=0.407 Sum_probs=175.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.
T Consensus 4 ~l~~~~l~~~~~-------------~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~---- 66 (251)
T PRK09544 4 LVSLENVSVSFG-------------QRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK---- 66 (251)
T ss_pred EEEEeceEEEEC-------------CceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc----
Confidence 589999999875 356999999999999999999999999999999999999999999999872
Q ss_pred hccccEEEEecCCCCCCCC--CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYL--TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~l--Tv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++|++|++.+++.+ |+.+++.+. .... .+++.++++.+||.+..++.+ +.||||||||
T Consensus 67 ---~~i~~v~q~~~~~~~l~~~~~~~~~~~------~~~~----~~~~~~~l~~~gl~~~~~~~~-----~~LSgGq~qr 128 (251)
T PRK09544 67 ---LRIGYVPQKLYLDTTLPLTVNRFLRLR------PGTK----KEDILPALKRVQAGHLIDAPM-----QKLSGGETQR 128 (251)
T ss_pred ---cCEEEeccccccccccChhHHHHHhcc------cccc----HHHHHHHHHHcCChHHHhCCh-----hhCCHHHHHH
Confidence 3699999998877764 677776431 1111 235678999999998877765 4899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|||++||+++ .+.+.+|++++|++ +++..|++++
T Consensus 129 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~-~i~~~~d~i~~l~~-~i~~~g~~~~ 206 (251)
T PRK09544 129 VLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLH-LVMAKTDEVLCLNH-HICCSGTPEV 206 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEECC-ceEeeCCHHH
Confidence 99999999999999999999999999999999999999875 899999999986 57788999999965 7999999876
Q ss_pred HH
Q 010509 275 AM 276 (508)
Q Consensus 275 ~~ 276 (508)
..
T Consensus 207 ~~ 208 (251)
T PRK09544 207 VS 208 (251)
T ss_pred Hh
Confidence 53
No 253
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.8e-42 Score=374.93 Aligned_cols=215 Identities=24% Similarity=0.403 Sum_probs=183.0
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|+++.+ +.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.
T Consensus 264 ~~l~~~~l~~~~---------------~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~ 328 (510)
T PRK09700 264 TVFEVRNVTSRD---------------RKKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDIS 328 (510)
T ss_pred cEEEEeCccccC---------------CCcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECC
Confidence 368999998642 13899999999999999999999999999999999999999999999999874
Q ss_pred h-----hccccEEEEecC---CCCCCCCCHHHHHHHHHHhc---CCC--C-CCHHHHHHHHHHHHHHcCCC-cccccccC
Q 010509 117 N-----QMTRNTGFVTQE---DVLSPYLTVTETMVFTALLQ---LPN--S-FTEKEKIKCAEAVMTELGLS-ECKNSLIG 181 (508)
Q Consensus 117 ~-----~~~~~i~yv~Q~---~~l~~~lTv~E~l~~~~~l~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~vg 181 (508)
+ ..++.++|++|+ ..+++.+||.||+.+....+ ... . ....+.+++++++++.+||. +..++.++
T Consensus 329 ~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 408 (510)
T PRK09700 329 PRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNIT 408 (510)
T ss_pred CCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccc
Confidence 2 234679999998 46889999999998753211 000 0 12233345678999999997 67777765
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
+|||||||||+||++|+.+|++|||||||+|||+.++..+++.|++++++|.|||++|||+. .+.++||++++|
T Consensus 409 -----~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~-~~~~~~d~i~~l 482 (510)
T PRK09700 409 -----ELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP-EIITVCDRIAVF 482 (510)
T ss_pred -----cCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEE
Confidence 89999999999999999999999999999999999999999999999878999999999986 577899999999
Q ss_pred eCCeEEEEcCh
Q 010509 262 SEGYPLYSGEA 272 (508)
Q Consensus 262 ~~G~iv~~G~~ 272 (508)
++|+++..++.
T Consensus 483 ~~G~i~~~~~~ 493 (510)
T PRK09700 483 CEGRLTQILTN 493 (510)
T ss_pred ECCEEEEEecC
Confidence 99999988865
No 254
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-42 Score=362.02 Aligned_cols=217 Identities=26% Similarity=0.422 Sum_probs=196.4
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+..++++|++++++ ..++|+||||++++||++||+|.||||||||+|+|+|.++|++|+|.++|++.
T Consensus 6 ~~ll~~~~i~K~Fg-------------gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~ 72 (500)
T COG1129 6 PPLLELRGISKSFG-------------GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPV 72 (500)
T ss_pred cceeeeecceEEcC-------------CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEc
Confidence 34689999999976 57899999999999999999999999999999999999999999999999987
Q ss_pred Ch-----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC
Q 010509 116 SN-----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 116 ~~-----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 189 (508)
.. .....|+.|+|+..+.|+|||.||+.++...+.+ .-.+++..++++.++|+.+|+....+++++ +||
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~-----~Ls 147 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVG-----DLS 147 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhh-----hCC
Confidence 42 3456799999999999999999999887554331 235677888899999999999655788886 899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
+||||.|.||+||..+++||+||||||.|+......+.+.+++|+++|.+||++||.++ ++++.|||+.+|.||+.+..
T Consensus 148 iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~-Ei~~i~DritVlRDG~~v~~ 226 (500)
T COG1129 148 IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLD-EVFEIADRITVLRDGRVVGT 226 (500)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHH-HHHHhcCEEEEEeCCEEeee
Confidence 99999999999999999999999999999999999999999999999999999999986 69999999999999999988
Q ss_pred cC
Q 010509 270 GE 271 (508)
Q Consensus 270 G~ 271 (508)
++
T Consensus 227 ~~ 228 (500)
T COG1129 227 RP 228 (500)
T ss_pred cc
Confidence 87
No 255
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=7.5e-42 Score=332.87 Aligned_cols=209 Identities=24% Similarity=0.379 Sum_probs=172.5
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEEC--CE--e
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYN--GK--P 114 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~--G~--~ 114 (508)
++++|++++++... +....+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++ |+ +
T Consensus 2 l~~~~l~~~~~~~~------~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~ 75 (224)
T TIGR02324 2 LEVEDLSKTFTLHQ------QGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVD 75 (224)
T ss_pred EEEEeeEEEeeccc------CCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccc
Confidence 78899999875210 00012479999999999999999999999999999999999999999999998 43 4
Q ss_pred CCh----h----ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCC
Q 010509 115 FSN----Q----MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-KNSLIGGPLT 185 (508)
Q Consensus 115 ~~~----~----~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~ 185 (508)
+.. . .++.++|++|++.+++.+||.|++.+..... ....++..++++++++.+||.+. .++.+
T Consensus 76 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 147 (224)
T TIGR02324 76 LAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLER---GVPREAARARARELLARLNIPERLWHLPP----- 147 (224)
T ss_pred hhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhhCCc-----
Confidence 321 1 1357999999999999999999998764322 12334445678889999999763 45444
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
++||||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||++. .+..++|+++.+.
T Consensus 148 ~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~-~~~~~~d~i~~~~ 223 (224)
T TIGR02324 148 ATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEE-VRELVADRVMDVT 223 (224)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcceeEecC
Confidence 589999999999999999999999999999999999999999999999877999999999965 5667899998764
No 256
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.4e-42 Score=391.08 Aligned_cols=213 Identities=23% Similarity=0.387 Sum_probs=182.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++|+|+. .++++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||.++.+
T Consensus 477 ~I~~~~vsf~y~~-----------~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 545 (710)
T TIGR03796 477 YVELRNITFGYSP-----------LEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREE 545 (710)
T ss_pred eEEEEEEEEecCC-----------CCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHH
Confidence 6999999999862 13579999999999999999999999999999999999999999999999999853
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~ 186 (508)
.+|+.++||+|++.+++. |++||+.++. + ..+++ ++.++++..|+.+ -.||.+|+ ...
T Consensus 546 ~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~----~-~~~~~----~i~~al~~~~l~~~i~~lp~gl~t~i~e-~G~ 614 (710)
T TIGR03796 546 IPREVLANSVAMVDQDIFLFEG-TVRDNLTLWD----P-TIPDA----DLVRACKDAAIHDVITSRPGGYDAELAE-GGA 614 (710)
T ss_pred CCHHHHHhheeEEecCChhhhc-cHHHHhhCCC----C-CCCHH----HHHHHHHHhCCHHHHHhCcCcccceecc-CCC
Confidence 578899999999999975 9999998642 1 22333 3445566656543 45677763 457
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++|||||+++|++|+||||||+||+.+..++.+.|++ .++|+|++||+++. + ..+|||++|++|++
T Consensus 615 ~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~---~~~T~IiitHrl~~-i-~~~D~Iivl~~G~i 689 (710)
T TIGR03796 615 NLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR---RGCTCIIVAHRLST-I-RDCDEIIVLERGKV 689 (710)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh---cCCEEEEEecCHHH-H-HhCCEEEEEeCCEE
Confidence 8999999999999999999999999999999999999999999986 48999999999863 4 56999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|+.+++.+
T Consensus 690 ~~~G~~~~Ll~ 700 (710)
T TIGR03796 690 VQRGTHEELWA 700 (710)
T ss_pred EEecCHHHHHH
Confidence 99999988764
No 257
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=4e-42 Score=380.05 Aligned_cols=212 Identities=22% Similarity=0.372 Sum_probs=184.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++. ++++|+|+|+++++||.+||+|+||||||||+|+|+|+++|++|+|.+||+++++
T Consensus 340 ~i~~~~v~f~y~~------------~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~ 407 (592)
T PRK10790 340 RIDIDNVSFAYRD------------DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSS 407 (592)
T ss_pred eEEEEEEEEEeCC------------CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhh
Confidence 5999999999751 2469999999999999999999999999999999999999999999999998854
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~ 186 (508)
.++++++||+|++.+|+. |++||+.++. ..++ ++++++++.+|+.+ -.||.+|. ...
T Consensus 408 ~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~------~~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e-~g~ 475 (592)
T PRK10790 408 LSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR------DISE----EQVWQALETVQLAELARSLPDGLYTPLGE-QGN 475 (592)
T ss_pred CCHHHHHhheEEEccCCccccc-hHHHHHHhCC------CCCH----HHHHHHHHHcCcHHHHHhccccccccccC-CCC
Confidence 568899999999999986 9999998852 1222 34666777777653 34677763 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||||+.+|+|++||||||+||+.+..++.+.|+++.+ ++|+|++||+++ ....+|+|++|++|++
T Consensus 476 ~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~-~~tvIivtHr~~--~l~~~D~ii~l~~G~i 552 (592)
T PRK10790 476 NLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE-HTTLVVIAHRLS--TIVEADTILVLHRGQA 552 (592)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC-CCEEEEEecchH--HHHhCCEEEEEECCEE
Confidence 7999999999999999999999999999999999999999999999865 699999999985 3456999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|+.++..
T Consensus 553 ~~~G~~~~L~ 562 (592)
T PRK10790 553 VEQGTHQQLL 562 (592)
T ss_pred EEEcCHHHHH
Confidence 9999998875
No 258
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=5.2e-42 Score=330.53 Aligned_cols=198 Identities=25% Similarity=0.392 Sum_probs=171.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 68 (207)
T PRK13539 2 MLEGEDLACVRG-------------GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD 68 (207)
T ss_pred EEEEEeEEEEEC-------------CeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc
Confidence 589999999875 3569999999999999999999999999999999999999999999999987642
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++|++.+++.+|++||+.+..... ... .++++++++.+||.+..++.+ +.||||||||+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~~~----~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~qrl 136 (207)
T PRK13539 69 PDVAEACHYLGHRNAMKPALTVAENLEFWAAFL---GGE----ELDIAAALEAVGLAPLAHLPF-----GYLSAGQKRRV 136 (207)
T ss_pred hhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhc---CCc----HHHHHHHHHHcCCHHHHcCCh-----hhcCHHHHHHH
Confidence 25667999999998888999999998765332 111 234788999999987766655 48999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
+||++|+.+|++++|||||+|||+.++.++.+.|++++++|+|||++||++.. +.. |+++.+..
T Consensus 137 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~-~~~--~~~~~~~~ 200 (207)
T PRK13539 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLG-LPG--ARELDLGP 200 (207)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchh-hcc--CcEEeecC
Confidence 99999999999999999999999999999999999998789999999999863 544 88877743
No 259
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=4.9e-42 Score=377.91 Aligned_cols=216 Identities=30% Similarity=0.557 Sum_probs=186.5
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++++|+.. ++.+|+|+|++++|||.+||+||||||||||+|+|+|.++|++|+|.+||+++.
T Consensus 337 ~~i~~~~v~f~y~~~-----------~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~ 405 (574)
T PRK11160 337 VSLTLNNVSFTYPDQ-----------PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIA 405 (574)
T ss_pred CeEEEEEEEEECCCC-----------CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhh
Confidence 369999999997521 246999999999999999999999999999999999999999999999999875
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc------cccccCCCCCC
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC------KNSLIGGPLTR 186 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~------~~~~vg~~~~~ 186 (508)
+ .+++.++||+|++.+++. |++||+.++. + ..++ +.++++++..++.+. .||.+|. ...
T Consensus 406 ~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~----~-~~~~----~~i~~al~~~~l~~~i~~p~GldT~vge-~g~ 474 (574)
T PRK11160 406 DYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAA----P-NASD----EALIEVLQQVGLEKLLEDDKGLNAWLGE-GGR 474 (574)
T ss_pred hCCHHHHHhheeEEcccchhhcc-cHHHHhhcCC----C-ccCH----HHHHHHHHHcCCHHHHcCccccCchhcC-CCC
Confidence 4 567889999999999975 9999998753 1 1222 346778888888654 4677763 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||+|+++|++|+||||||+||+.++..+.+.|+++. +++|+|+++|+++. + ..+|++++|++|++
T Consensus 475 ~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~-~~~tviiitHr~~~-~-~~~d~i~~l~~G~i 551 (574)
T PRK11160 475 QLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA-QNKTVLMITHRLTG-L-EQFDRICVMDNGQI 551 (574)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecChhH-H-HhCCEEEEEeCCeE
Confidence 899999999999999999999999999999999999999999999986 48999999999964 4 56999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|+.++..+
T Consensus 552 ~~~g~~~~l~~ 562 (574)
T PRK11160 552 IEQGTHQELLA 562 (574)
T ss_pred EEeCCHHHHHh
Confidence 99999887653
No 260
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.2e-42 Score=344.86 Aligned_cols=214 Identities=21% Similarity=0.332 Sum_probs=181.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|+++.+.. +...+|+|+|++|++||+++|+||||||||||+++|+|+++ .+|+|.++|.++..
T Consensus 2 ~i~~~nls~~~~~-----------~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~ 69 (275)
T cd03289 2 QMTVKDLTAKYTE-----------GGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNS 69 (275)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhh
Confidence 4789999999851 13469999999999999999999999999999999999987 79999999998743
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC------CCCCc
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGG------PLTRG 187 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~------~~~~~ 187 (508)
..++.++|++|++.+++. |++||+.... ..+. +++.+.++.+||.+..++.++. ...+.
T Consensus 70 ~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~------~~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~ 138 (275)
T cd03289 70 VPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYG------KWSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCV 138 (275)
T ss_pred CCHHHHhhhEEEECCCcccchh-hHHHHhhhcc------CCCH----HHHHHHHHHcCCHHHHHhCcccccceecCCCCC
Confidence 456789999999999985 9999996421 1122 3456788889998766655431 12345
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||||||||++|||||+.+|+|++|||||++||+.+...+.+.|+++. +++|||+++|+++ .+. .+||+++|++|+++
T Consensus 139 LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~-~~~tii~isH~~~-~i~-~~dri~vl~~G~i~ 215 (275)
T cd03289 139 LSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF-ADCTVILSEHRIE-AML-ECQRFLVIEENKVR 215 (275)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc-CCCEEEEEECCHH-HHH-hCCEEEEecCCeEe
Confidence 99999999999999999999999999999999999999999999875 4899999999985 454 49999999999999
Q ss_pred EEcChhhHHH
Q 010509 268 YSGEASGAMN 277 (508)
Q Consensus 268 ~~G~~~~~~~ 277 (508)
+.|+++++..
T Consensus 216 ~~g~~~~l~~ 225 (275)
T cd03289 216 QYDSIQKLLN 225 (275)
T ss_pred ecCCHHHHhh
Confidence 9999998754
No 261
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=2.5e-42 Score=373.50 Aligned_cols=208 Identities=22% Similarity=0.302 Sum_probs=181.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++++ ++++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|.++..
T Consensus 3 ~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~ 69 (490)
T PRK10938 3 SLQISQGTFRLS-------------DTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITR 69 (490)
T ss_pred eEEEEeEEEEcC-------------CeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCccccc
Confidence 589999999875 3469999999999999999999999999999999999999999999999976532
Q ss_pred ----hccccEEEEecCCCC--C-C-----CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVL--S-P-----YLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l--~-~-----~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
..++.++|++|++.. + + .+|++|++.+. .+.+++++++++.+||.+..++.++
T Consensus 70 ~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~---- 134 (490)
T PRK10938 70 LSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRFK---- 134 (490)
T ss_pred CCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCcc----
Confidence 234569999998643 1 1 46888876431 1234568899999999988887765
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++|.|||++||++. .+.+.||++++|++|+
T Consensus 135 -~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~-~~~~~~d~v~~l~~G~ 212 (490)
T PRK10938 135 -YLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFD-EIPDFVQFAGVLADCT 212 (490)
T ss_pred -cCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH-HHHhhCCEEEEEECCE
Confidence 89999999999999999999999999999999999999999999999888999999999986 5778999999999999
Q ss_pred EEEEcChhhH
Q 010509 266 PLYSGEASGA 275 (508)
Q Consensus 266 iv~~G~~~~~ 275 (508)
++..|++++.
T Consensus 213 i~~~~~~~~~ 222 (490)
T PRK10938 213 LAETGEREEI 222 (490)
T ss_pred EEEeCCHHHH
Confidence 9999998765
No 262
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=1.3e-42 Score=338.70 Aligned_cols=210 Identities=27% Similarity=0.454 Sum_probs=171.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|+++.++.. +++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 11 ~l~~~~l~~~~~~~----------~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~ 80 (226)
T cd03248 11 IVKFQNVTFAYPTR----------PDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQ 80 (226)
T ss_pred eEEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHH
Confidence 69999999997521 12469999999999999999999999999999999999999999999999987642
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHc--CCCcccccccCCCCCCccCHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTEL--GLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSGG 191 (508)
..++.++|++|++.+++ .|++||+.+...........+......++++++.+ |+.+..++.+ ++||||
T Consensus 81 ~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~-----~~LSgG 154 (226)
T cd03248 81 YEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKG-----SQLSGG 154 (226)
T ss_pred cCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCC-----CcCCHH
Confidence 34567999999998876 59999998753211000000011112356788888 7776666554 589999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
|||||+||++|+.+|++++|||||+|||+.++..+.+.|+++++ ++|||++||+++. +. .+|++++|++|++
T Consensus 155 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~-~~d~i~~l~~g~i 226 (226)
T cd03248 155 QKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE-RRTVLVIAHRLST-VE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC-CCEEEEEECCHHH-HH-hCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999999875 6899999999874 54 4999999999974
No 263
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=5.1e-42 Score=325.93 Aligned_cols=177 Identities=34% Similarity=0.546 Sum_probs=154.8
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh------hccccEEEEecCCC--CCC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN------QMTRNTGFVTQEDV--LSP 134 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~------~~~~~i~yv~Q~~~--l~~ 134 (508)
++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. ..++.++|++|++. ++
T Consensus 4 ~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~- 82 (190)
T TIGR01166 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF- 82 (190)
T ss_pred ccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc-
Confidence 4579999999999999999999999999999999999999999999999998731 23567999999973 44
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCC
Q 010509 135 YLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEP 214 (508)
Q Consensus 135 ~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEP 214 (508)
..||+||+.+..... ..+.++..++++++++.+||.+..++.+. +||||||||++||++|+.+|++++||||
T Consensus 83 ~~tv~~nl~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llllDEP 154 (190)
T TIGR01166 83 AADVDQDVAFGPLNL---GLSEAEVERRVREALTAVGASGLRERPTH-----CLSGGEKKRVAIAGAVAMRPDVLLLDEP 154 (190)
T ss_pred cccHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCchhhhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 479999999865432 22344455678899999999887777664 8999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 215 TSGLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 215 tsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
|+|||+.++..+.+.|++++++|+|||++||+++
T Consensus 155 t~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 155 TAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 9999999999999999999877999999999985
No 264
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=4.5e-42 Score=372.39 Aligned_cols=221 Identities=22% Similarity=0.365 Sum_probs=185.6
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-cccEEEECCEeC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-INGRITYNGKPF 115 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-~~G~I~~~G~~~ 115 (508)
..|+++|+++++... +++.+|+|+||++++||+++|+||||||||||||+|+|+.+| ++|+|.++|+++
T Consensus 256 ~~l~~~~l~~~~~~~----------~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~ 325 (500)
T TIGR02633 256 VILEARNLTCWDVIN----------PHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPV 325 (500)
T ss_pred ceEEEeCCccccccc----------ccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEEC
Confidence 368999998865210 124699999999999999999999999999999999999985 899999999987
Q ss_pred Ch-----hccccEEEEecCC---CCCCCCCHHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCC
Q 010509 116 SN-----QMTRNTGFVTQED---VLSPYLTVTETMVFTALLQLP--NSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPL 184 (508)
Q Consensus 116 ~~-----~~~~~i~yv~Q~~---~l~~~lTv~E~l~~~~~l~~~--~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~ 184 (508)
.. ..++.++|++|+. .+++.+||+||+.+....... ......+.+++++++++.+++.+ ..++.++
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 402 (500)
T TIGR02633 326 DIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIG--- 402 (500)
T ss_pred CCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccc---
Confidence 42 2356799999995 588999999999875321111 01223344567889999999974 5676664
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
.|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|++++++|.|||++|||++ .+.++||++++|++|
T Consensus 403 --~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~v~~l~~G 479 (500)
T TIGR02633 403 --RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELA-EVLGLSDRVLVIGEG 479 (500)
T ss_pred --cCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECC
Confidence 89999999999999999999999999999999999999999999999888999999999986 577899999999999
Q ss_pred eEEEEcChh
Q 010509 265 YPLYSGEAS 273 (508)
Q Consensus 265 ~iv~~G~~~ 273 (508)
+++..++.+
T Consensus 480 ~i~~~~~~~ 488 (500)
T TIGR02633 480 KLKGDFVNH 488 (500)
T ss_pred EEEEEEccc
Confidence 999887654
No 265
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=5.5e-42 Score=332.97 Aligned_cols=208 Identities=21% Similarity=0.346 Sum_probs=172.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++. ..+.+|+|+||++++||+++|+||||||||||+++|+|..+|++|+|.++|.++..
T Consensus 2 ~l~~~~l~~~~~~-----------~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 70 (221)
T cd03244 2 DIEFKNVSLRYRP-----------NLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISK 70 (221)
T ss_pred cEEEEEEEEecCC-----------CCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHh
Confidence 3789999998751 12469999999999999999999999999999999999999999999999998743
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccc-------ccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNS-------LIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~-------~vg~~~~~ 186 (508)
..++.++|++|++.+++ .|++||+.+.. .... +++.+.++.+++.+..++ .. +..++
T Consensus 71 ~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~------~~~~----~~~~~~~~~~~l~~~~~~l~~~l~~~~-~~~~~ 138 (221)
T cd03244 71 IGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFG------EYSD----EELWQALERVGLKEFVESLPGGLDTVV-EEGGE 138 (221)
T ss_pred CCHHHHhhhEEEECCCCcccc-chHHHHhCcCC------CCCH----HHHHHHHHHhCcHHHHHhccccccccc-ccCCC
Confidence 45678999999998776 59999986431 1121 235556677776554332 11 13456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++.. +.. +|++++|++|++
T Consensus 139 ~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~tii~~sh~~~~-~~~-~d~i~~l~~g~~ 215 (221)
T cd03244 139 NLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK-DCTVLTIAHRLDT-IID-SDRILVLDKGRV 215 (221)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-CCEEEEEeCCHHH-Hhh-CCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999865 6899999999864 544 899999999999
Q ss_pred EEEcC
Q 010509 267 LYSGE 271 (508)
Q Consensus 267 v~~G~ 271 (508)
++.|+
T Consensus 216 ~~~~~ 220 (221)
T cd03244 216 VEFDS 220 (221)
T ss_pred EecCC
Confidence 98876
No 266
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=4.4e-42 Score=386.23 Aligned_cols=216 Identities=25% Similarity=0.475 Sum_probs=185.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++|+. ..+++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||+++.+
T Consensus 463 ~I~~~~vsf~Y~~-----------~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~ 531 (694)
T TIGR03375 463 EIEFRNVSFAYPG-----------QETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQ 531 (694)
T ss_pred eEEEEEEEEEeCC-----------CCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhh
Confidence 5999999999852 13569999999999999999999999999999999999999999999999999854
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-------ECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~ 186 (508)
.+|+.++||+|++.+++. |++||+.++. + ..+++ ++.++++..|+. +-.||.+|+ ...
T Consensus 532 ~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~----~-~~~~~----~i~~a~~~~~l~~~i~~lp~gl~T~i~e-~G~ 600 (694)
T TIGR03375 532 IDPADLRRNIGYVPQDPRLFYG-TLRDNIALGA----P-YADDE----EILRAAELAGVTEFVRRHPDGLDMQIGE-RGR 600 (694)
T ss_pred CCHHHHHhccEEECCChhhhhh-hHHHHHhCCC----C-CCCHH----HHHHHHHHcChHHHHHhCcccccceecC-CCC
Confidence 568899999999999985 9999998752 1 22333 344555555543 345778874 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||||+++|++++||||||+||+.+..++.+.|+++.+ ++|+|++||+++ ..+.||+|++|++|++
T Consensus 601 ~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~-~~T~iiItHrl~--~~~~~D~iivl~~G~i 677 (694)
T TIGR03375 601 SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA-GKTLVLVTHRTS--LLDLVDRIIVMDNGRI 677 (694)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH--HHHhCCEEEEEeCCEE
Confidence 8999999999999999999999999999999999999999999999864 799999999986 3467999999999999
Q ss_pred EEEcChhhHHHH
Q 010509 267 LYSGEASGAMNY 278 (508)
Q Consensus 267 v~~G~~~~~~~~ 278 (508)
++.|+.++..+.
T Consensus 678 ~e~G~~~eLl~~ 689 (694)
T TIGR03375 678 VADGPKDQVLEA 689 (694)
T ss_pred EeeCCHHHHHHH
Confidence 999998887654
No 267
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.9e-42 Score=322.53 Aligned_cols=171 Identities=32% Similarity=0.582 Sum_probs=155.3
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++.+++|+|+++++||+++|+||||||||||+++|+|.++|++|+|.++|+++..
T Consensus 1 i~~~~l~~~~~-------------~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~ 67 (178)
T cd03229 1 LELKNVSKRYG-------------QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDL 67 (178)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccc
Confidence 46789988864 3569999999999999999999999999999999999999999999999988642
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
..++.++|++|++.+++.+|++|++.+. |||||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~------------------------------------------lS~G~ 105 (178)
T cd03229 68 EDELPPLRRRIGMVFQDFALFPHLTVLENIALG------------------------------------------LSGGQ 105 (178)
T ss_pred chhHHHHhhcEEEEecCCccCCCCCHHHheeec------------------------------------------CCHHH
Confidence 3456899999999999889999987532 89999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
|||++||++|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||++. .+.+.+|++++|++|+
T Consensus 106 ~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~-~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 106 QQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLD-EAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhcCEEEEEeCCC
Confidence 99999999999999999999999999999999999999999887 899999999986 5777899999999985
No 268
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3.3e-42 Score=388.04 Aligned_cols=214 Identities=23% Similarity=0.365 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++|+|+. ++++|+|+|+++++||.+||+||||||||||+++|+|++.|++|+|++||.++.+
T Consensus 473 ~I~~~~vsf~y~~------------~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~ 540 (708)
T TIGR01193 473 DIVINDVSYSYGY------------GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKD 540 (708)
T ss_pred cEEEEEEEEEcCC------------CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHH
Confidence 5999999999751 3569999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-------ECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~ 186 (508)
.+|+.+|||+|++.+++. |++||+.++.. + ..+++ ++.++++..|+. +-.||.+|+ ...
T Consensus 541 ~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~---~-~~~~~----~i~~a~~~a~l~~~i~~lp~gldt~i~e-~G~ 610 (708)
T TIGR01193 541 IDRHTLRQFINYLPQEPYIFSG-SILENLLLGAK---E-NVSQD----EIWAACEIAEIKDDIENMPLGYQTELSE-EGS 610 (708)
T ss_pred cCHHHHHHheEEEecCceehhH-HHHHHHhccCC---C-CCCHH----HHHHHHHHhCCHHHHHhcccccCcEecC-CCC
Confidence 578899999999999976 99999987531 1 22333 344555555543 345778873 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++|||||+++|++|+||||||+||+.+...+.+.|+++ +|+|+|+++|+++ ..+.+|++++|++|++
T Consensus 611 ~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~--~~~T~IiitHr~~--~~~~~D~i~~l~~G~i 686 (708)
T TIGR01193 611 SISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL--QDKTIIFVAHRLS--VAKQSDKIIVLDHGKI 686 (708)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh--cCCEEEEEecchH--HHHcCCEEEEEECCEE
Confidence 89999999999999999999999999999999999999999999985 4799999999986 3467999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|+.++..+
T Consensus 687 ~~~G~~~~L~~ 697 (708)
T TIGR01193 687 IEQGSHDELLD 697 (708)
T ss_pred EEECCHHHHHh
Confidence 99999887754
No 269
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=8.7e-42 Score=327.14 Aligned_cols=192 Identities=22% Similarity=0.358 Sum_probs=167.1
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
|+++|++++++ ++++|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 2 l~~~~l~~~~~-------------~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~ 68 (200)
T PRK13540 2 LDVIELDFDYH-------------DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD 68 (200)
T ss_pred EEEEEEEEEeC-------------CeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC
Confidence 78899999875 3569999999999999999999999999999999999999999999999998742
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|+..+++.+||+||+.+.... . .. ...++++++.+++.+..++.++ +||||||||
T Consensus 69 ~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~--~----~~--~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~~r 135 (200)
T PRK13540 69 LCTYQKQLCFVGHRSGINPYLTLRENCLYDIHF--S----PG--AVGITELCRLFSLEHLIDYPCG-----LLSSGQKRQ 135 (200)
T ss_pred HHHHHhheEEeccccccCcCCCHHHHHHHHHhc--C----cc--hHHHHHHHHHcCCchhhhCChh-----hcCHHHHHH
Confidence 3567899999999888899999999876421 1 11 2367889999999877776654 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEE
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKV 258 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v 258 (508)
++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|||++||++.. + +.+|..
T Consensus 136 v~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-~-~~~d~~ 196 (200)
T PRK13540 136 VALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLP-L-NKADYE 196 (200)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchh-c-cccchh
Confidence 999999999999999999999999999999999999997779999999999763 3 456654
No 270
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=2.8e-42 Score=379.41 Aligned_cols=217 Identities=28% Similarity=0.480 Sum_probs=187.2
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|+++.|+. ++++|+|+|++++|||.+||+||||||||||++.|.|+++|++|+|.+||+++.
T Consensus 327 ~~I~f~~vsf~y~~------------~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~ 394 (567)
T COG1132 327 GSIEFENVSFSYPG------------KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIR 394 (567)
T ss_pred CeEEEEEEEEEcCC------------CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehh
Confidence 35999999999861 468999999999999999999999999999999999999999999999999986
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-----HHHcCCCcccccccCCCCCCc
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAV-----MTELGLSECKNSLIGGPLTRG 187 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~-----l~~lgL~~~~~~~vg~~~~~~ 187 (508)
. .+|+.++||+|++.+|. -||+||+.++.. ..++++..+.++.+ ++ .+.+..||.+| +....
T Consensus 395 ~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~-----~at~eei~~a~k~a~~~d~I~--~lp~g~dt~vg-e~G~~ 465 (567)
T COG1132 395 DISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRP-----DATDEEIEEALKLANAHEFIA--NLPDGYDTIVG-ERGVN 465 (567)
T ss_pred hcCHHHHHHhccEEcccceeec-ccHHHHHhcCCC-----CCCHHHHHHHHHHhChHHHHH--hCcccccceec-CCCcc
Confidence 4 57889999999999998 699999998642 23444443333322 33 33556799998 55678
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||||||||++||||++.+|+||+||||||+||+.+...+.+.++++. +|+|+|+++|+++. +.+ +|+|++|++|+++
T Consensus 466 LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~-~~rT~iiIaHRlst-i~~-aD~IiVl~~G~i~ 542 (567)
T COG1132 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLL-KGRTTLIIAHRLST-IKN-ADRIIVLDNGRIV 542 (567)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHh-cCCEEEEEeccHhH-HHh-CCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999887 56899999999964 544 9999999999999
Q ss_pred EEcChhhHHH
Q 010509 268 YSGEASGAMN 277 (508)
Q Consensus 268 ~~G~~~~~~~ 277 (508)
+.|+.++...
T Consensus 543 e~G~h~eLl~ 552 (567)
T COG1132 543 ERGTHEELLA 552 (567)
T ss_pred EecCHHHHHH
Confidence 9999998865
No 271
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=7.3e-42 Score=384.91 Aligned_cols=214 Identities=26% Similarity=0.446 Sum_probs=180.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++|+.. +++++|+|+|++++|||.+||+||||||||||+|+|+|+++|++|+|.+||+++++
T Consensus 478 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~ 547 (711)
T TIGR00958 478 LIEFQDVSFSYPNR----------PDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQ 547 (711)
T ss_pred eEEEEEEEEECCCC----------CCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHh
Confidence 59999999998621 13579999999999999999999999999999999999999999999999999853
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~ 186 (508)
..+++++||+|++.+++ -|++||+.++. + ..++ +.+.++++..++.+ -.||.+|+ ...
T Consensus 548 ~~~~~lr~~i~~v~Q~~~lF~-gTIreNI~~g~----~-~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~ 616 (711)
T TIGR00958 548 YDHHYLHRQVALVGQEPVLFS-GSVRENIAYGL----T-DTPD----EEIMAAAKAANAHDFIMEFPNGYDTEVGE-KGS 616 (711)
T ss_pred cCHHHHHhhceEEecCccccc-cCHHHHHhcCC----C-CCCH----HHHHHHHHHcCCHHHHHhCCCccCCcccC-CCC
Confidence 46789999999999997 49999998753 1 1232 33556666666543 35777773 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||||+++|+|++||||||+||+.+...+.+ .. ..+++|+|+++|+++. .+.+|+|++|++|++
T Consensus 617 ~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~~~~TvIiItHrl~~--i~~aD~IivL~~G~i 691 (711)
T TIGR00958 617 QLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SRASRTVLLIAHRLST--VERADQILVLKKGSV 691 (711)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--ccCCCeEEEEeccHHH--HHhCCEEEEEECCEE
Confidence 899999999999999999999999999999999999999988 22 2358999999999863 466999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|+.++..+
T Consensus 692 ve~Gt~~eL~~ 702 (711)
T TIGR00958 692 VEMGTHKQLME 702 (711)
T ss_pred EEeeCHHHHHh
Confidence 99999988754
No 272
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=4.2e-42 Score=308.81 Aligned_cols=215 Identities=30% Similarity=0.464 Sum_probs=193.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC-
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS- 116 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~- 116 (508)
.|+++++++.|+ ..++|.|++++.++||.+.++||||||||||+|.|.=+..|.+|+..+.|...+
T Consensus 2 sirv~~in~~yg-------------~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~ 68 (242)
T COG4161 2 SIQLNGINCFYG-------------AHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDF 68 (242)
T ss_pred ceEEcccccccc-------------cchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEeccccccc
Confidence 477888888765 467999999999999999999999999999999999888899999999886432
Q ss_pred ------h---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCc
Q 010509 117 ------N---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRG 187 (508)
Q Consensus 117 ------~---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 187 (508)
+ ..|+.+|+|+|+..+.|.+||.||+.-+- .+. .+.++++.+.++.++|+.+.|.+.+|+.. -.
T Consensus 69 s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap-~kv-~gl~~~qa~~~a~ellkrlrl~~~adr~p-----lh 141 (242)
T COG4161 69 SKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAP-CRV-LGLSKDQALARAEKLLKRLRLKPYADRYP-----LH 141 (242)
T ss_pred ccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhh-HHH-hCCCHHHHHHHHHHHHHHhccccccccCc-----ee
Confidence 1 46789999999999999999999997643 332 24678888999999999999999998765 48
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||||+|||+|||||+.+|++|++||||+.|||.-..++++++++|+..|.|=+++||..+ ...+.+.||+.|.+|+|+
T Consensus 142 lsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~-va~k~as~vvyme~g~iv 220 (242)
T COG4161 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE-VARKTASRVVYMENGHIV 220 (242)
T ss_pred cccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh-HHHhhhhheEeeecCeeE
Confidence 9999999999999999999999999999999999999999999999999999999999986 678899999999999999
Q ss_pred EEcChh
Q 010509 268 YSGEAS 273 (508)
Q Consensus 268 ~~G~~~ 273 (508)
..|+.+
T Consensus 221 e~g~a~ 226 (242)
T COG4161 221 EQGDAS 226 (242)
T ss_pred eecchh
Confidence 999865
No 273
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.6e-42 Score=357.59 Aligned_cols=215 Identities=28% Similarity=0.490 Sum_probs=185.5
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+-.++|+|++++|.. +++||+++||+|++||-+||+|+|||||||++|+|.+... .+|+|++||+++
T Consensus 349 ~~~I~F~dV~f~y~~------------k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~di 415 (591)
T KOG0057|consen 349 GGSIEFDDVHFSYGP------------KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDI 415 (591)
T ss_pred CCcEEEEeeEEEeCC------------CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeH
Confidence 345999999999861 4569999999999999999999999999999999999988 999999999998
Q ss_pred Ch----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCC
Q 010509 116 SN----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL-------SECKNSLIGGPL 184 (508)
Q Consensus 116 ~~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~ 184 (508)
.+ ..|+.|||||||..||.+ ||.+|+.++.. +.+.++ |-++.+..|+ ++-.+|.+| +.
T Consensus 416 k~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~-----sas~ee----V~e~~k~a~~hd~i~~l~~GY~T~VG-er 484 (591)
T KOG0057|consen 416 KEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNP-----SASDEE----VVEACKRAGLHDVISRLPDGYQTLVG-ER 484 (591)
T ss_pred hhhChHHhhhheeEeCCcccccch-hHHHHhhcCCC-----CcCHHH----HHHHHHHcCcHHHHHhccccchhhHh-hc
Confidence 54 578899999999999986 99999998742 234443 3344455554 445677787 45
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
...|||||||||+||||++.||+|+++|||||.||+.+..++++.+.+ ...|+|+|++.|+.+ ...-||+|++|++|
T Consensus 485 G~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~-~~~~rTvI~IvH~l~--ll~~~DkI~~l~nG 561 (591)
T KOG0057|consen 485 GLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD-VMSGRTVIMIVHRLD--LLKDFDKIIVLDNG 561 (591)
T ss_pred ccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH-hcCCCeEEEEEecch--hHhcCCEEEEEECC
Confidence 568999999999999999999999999999999999999999999999 346899999999986 45679999999999
Q ss_pred eEEEEcChhhHHH
Q 010509 265 YPLYSGEASGAMN 277 (508)
Q Consensus 265 ~iv~~G~~~~~~~ 277 (508)
++...|+-+++..
T Consensus 562 ~v~e~gth~ell~ 574 (591)
T KOG0057|consen 562 TVKEYGTHSELLA 574 (591)
T ss_pred eeEEeccHHHHhh
Confidence 9999999998876
No 274
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.5e-41 Score=337.98 Aligned_cols=214 Identities=20% Similarity=0.330 Sum_probs=172.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++. ..+.+|+|+|+++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++..
T Consensus 19 ~i~~~~l~~~~~~-----------~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~ 87 (257)
T cd03288 19 EIKIHDLCVRYEN-----------NLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISK 87 (257)
T ss_pred eEEEEEEEEEeCC-----------CCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhh
Confidence 5999999998751 12469999999999999999999999999999999999999999999999998743
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCCcccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKI-----KCAEAVMTEL--GLSECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~ 186 (508)
..++.++|++|++.+++ .|++||+.... ........ ..+++.++.+ |++...+ ...+
T Consensus 88 ~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~-----~~~~ 155 (257)
T cd03288 88 LPLHTLRSRLSIILQDPILFS-GSIRFNLDPEC------KCTDDRLWEALEIAQLKNMVKSLPGGLDAVVT-----EGGE 155 (257)
T ss_pred CCHHHHhhhEEEECCCCcccc-cHHHHhcCcCC------CCCHHHHHHHHHHhCcHHHHhhcccccCcEec-----cCCC
Confidence 34678999999998887 49999875321 11111111 0122333333 3333322 2346
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++. ++.|||++||+++. +.. +||+++|++|++
T Consensus 156 ~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~-~~~tiii~sh~~~~-~~~-~dri~~l~~G~i 232 (257)
T cd03288 156 NFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF-ADRTVVTIAHRVST-ILD-ADLVLVLSRGIL 232 (257)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc-CCCEEEEEecChHH-HHh-CCEEEEEECCEE
Confidence 899999999999999999999999999999999999999999999975 48999999999974 544 999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|++++..+
T Consensus 233 ~~~g~~~~~~~ 243 (257)
T cd03288 233 VECDTPENLLA 243 (257)
T ss_pred EEeCCHHHHHh
Confidence 99999887643
No 275
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-41 Score=356.21 Aligned_cols=214 Identities=22% Similarity=0.308 Sum_probs=181.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++||++.+... ..+.+|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~----------~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~-- 88 (549)
T PRK13545 21 FDKLKDLFFRSKDG----------EYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA-- 88 (549)
T ss_pred eeEEEEEEEecCCC----------ccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee--
Confidence 57777777765411 125699999999999999999999999999999999999999999999999752
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVS 197 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 197 (508)
++.+...+.+.+|++|++.+..... ..+.++..++++++++.+||.+..++.++ +||||||||++
T Consensus 89 -------~i~~~~~l~~~lTV~EnL~l~~~~~---~~~~~e~~e~i~elLe~lgL~~~ld~~~~-----~LSGGQrQRVa 153 (549)
T PRK13545 89 -------LIAISSGLNGQLTGIENIELKGLMM---GLTKEKIKEIIPEIIEFADIGKFIYQPVK-----TYSSGMKSRLG 153 (549)
T ss_pred -------eEEeccccCCCCcHHHHHHhhhhhc---CCCHHHHHHHHHHHHHHcCChhHhhCCcc-----cCCHHHHHHHH
Confidence 2233445677799999998754332 23344555678889999999888777664 89999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHH
Q 010509 198 IGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMN 277 (508)
Q Consensus 198 Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~ 277 (508)
||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+.++||++++|++|++++.|+++++..
T Consensus 154 LArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~-~i~~l~DrIivL~~GkIv~~G~~~el~~ 232 (549)
T PRK13545 154 FAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS-QVKSFCTKALWLHYGQVKEYGDIKEVVD 232 (549)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999999999999999999999999999878999999999986 5778999999999999999999988765
Q ss_pred HH
Q 010509 278 YF 279 (508)
Q Consensus 278 ~f 279 (508)
-+
T Consensus 233 ~~ 234 (549)
T PRK13545 233 HY 234 (549)
T ss_pred hH
Confidence 44
No 276
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=1.5e-41 Score=318.25 Aligned_cols=169 Identities=31% Similarity=0.577 Sum_probs=152.0
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++. .++.+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 i~~~~l~~~~~~-----------~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~ 69 (173)
T cd03246 1 LEVENVSFRYPG-----------AEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQW 69 (173)
T ss_pred CEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccC
Confidence 467899988641 12469999999999999999999999999999999999999999999999998743
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
..++.++|++|++.+++. |++||+ |||||||
T Consensus 70 ~~~~~~~~i~~~~q~~~~~~~-tv~~~l---------------------------------------------LS~G~~q 103 (173)
T cd03246 70 DPNELGDHVGYLPQDDELFSG-SIAENI---------------------------------------------LSGGQRQ 103 (173)
T ss_pred CHHHHHhheEEECCCCccccC-cHHHHC---------------------------------------------cCHHHHH
Confidence 346789999999988874 999886 8999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
|++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|||++||+++ .+ ..+|++++|++|++
T Consensus 104 rv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 104 RLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE-TL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEEECCCC
Confidence 999999999999999999999999999999999999999877999999999986 45 57999999999974
No 277
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.8e-41 Score=367.75 Aligned_cols=204 Identities=23% Similarity=0.403 Sum_probs=176.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-----hccccEEEEecCC---CCCCCCC
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-----QMTRNTGFVTQED---VLSPYLT 137 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~---~l~~~lT 137 (508)
+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..++.+|||+|++ .+++.+|
T Consensus 267 ~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~t 346 (501)
T PRK10762 267 GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMS 346 (501)
T ss_pred CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCc
Confidence 6999999999999999999999999999999999999999999999998742 2346799999995 5788999
Q ss_pred HHHHHHHHHHhcCC---CCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 010509 138 VTETMVFTALLQLP---NSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDE 213 (508)
Q Consensus 138 v~E~l~~~~~l~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDE 213 (508)
|.|++.+....... ...+.++.+++++++++.+||. +..++.++ .|||||||||+||++|+.+|++|+|||
T Consensus 347 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekqrv~lA~al~~~p~lllLDE 421 (501)
T PRK10762 347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIG-----LLSGGNQQKVAIARGLMTRPKVLILDE 421 (501)
T ss_pred HHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchh-----hCCHHHHHHHHHHHHHhhCCCEEEEcC
Confidence 99999875321110 0122334456788999999995 66777665 899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 214 PTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 214 PtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
||+|||+.++..+.+.|++++++|.|||++|||+. .+.++||++++|++|+++..|+++++
T Consensus 422 Pt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 422 PTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP-EVLGMSDRILVMHEGRISGEFTREQA 482 (501)
T ss_pred CCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH-HHHhhCCEEEEEECCEEEEEeccccC
Confidence 99999999999999999999878999999999986 57789999999999999999988765
No 278
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=2.2e-41 Score=318.50 Aligned_cols=175 Identities=31% Similarity=0.567 Sum_probs=155.0
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++.++.. .+.+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 i~~~~~~~~~~~~-----------~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~ 69 (178)
T cd03247 1 LSINNVSFSYPEQ-----------EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL 69 (178)
T ss_pred CEEEEEEEEeCCC-----------CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH
Confidence 4678999887510 1369999999999999999999999999999999999999999999999997642
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++|++.+++ .|++||+ +..||||||||
T Consensus 70 ~~~~~~~i~~~~q~~~~~~-~tv~~~i------------------------------------------~~~LS~G~~qr 106 (178)
T cd03247 70 EKALSSLISVLNQRPYLFD-TTLRNNL------------------------------------------GRRFSGGERQR 106 (178)
T ss_pred HHHHHhhEEEEccCCeeec-ccHHHhh------------------------------------------cccCCHHHHHH
Confidence 34667999999998876 6998886 13799999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
++|||+|+.+|++++|||||+|||+.++..+++.|++++ ++.|||++||++.. +. .+|++++|++|++++.|
T Consensus 107 v~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~-~~~tii~~sh~~~~-~~-~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 107 LALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL-KDKTLIWITHHLTG-IE-HMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-HH-hCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999996 48999999999874 54 69999999999998754
No 279
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=2.1e-41 Score=330.09 Aligned_cols=197 Identities=28% Similarity=0.449 Sum_probs=167.3
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCC--CCCHHHHHHHHHHhc
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSP--YLTVTETMVFTALLQ 149 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~--~lTv~E~l~~~~~l~ 149 (508)
+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.. .++.++|++|++.+++ .+|+.||+.+.....
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGH 79 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHhccccc
Confidence 4689999999999999999999999999999999999999998643 4567999999987643 479999998753211
Q ss_pred CC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 010509 150 LP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS 228 (508)
Q Consensus 150 ~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~ 228 (508)
.. ......+.+++++++++.+|+.+..++.++ +||||||||++||++|+.+|+++++||||+|||+.++..+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~ 154 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVG-----ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE 154 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchhhcCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence 00 001122334568899999999887777664 899999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHH
Q 010509 229 ILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 229 ~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
.|++++++|+|+|++||+++ .+.+.+|+++++ +|++++.|++++..
T Consensus 155 ~l~~~~~~~~tvii~sH~~~-~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 155 LFIELAGAGTAILMTTHDLA-QAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 99999877999999999986 577899999999 89999999987653
No 280
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=2e-41 Score=374.09 Aligned_cols=213 Identities=27% Similarity=0.462 Sum_probs=181.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++. ++.+|+|+|++++|||.++|+|+||||||||+|+|+|+++|.+|+|.+||+++.+
T Consensus 334 ~I~~~~vsf~y~~------------~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~ 401 (588)
T PRK13657 334 AVEFDDVSFSYDN------------SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRT 401 (588)
T ss_pred eEEEEEEEEEeCC------------CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhh
Confidence 5999999999851 2469999999999999999999999999999999999999999999999998854
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-------ECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~ 186 (508)
..++.++||+|++.+++. |++||+.++. + +.++++ +.++++..|+. +-.||.+|. ..+
T Consensus 402 ~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~-~~~d~~----i~~al~~~~l~~~i~~lp~gldt~i~~-~g~ 470 (588)
T PRK13657 402 VTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGR----P-DATDEE----MRAAAERAQAHDFIERKPDGYDTVVGE-RGR 470 (588)
T ss_pred CCHHHHHhheEEEecCcccccc-cHHHHHhcCC----C-CCCHHH----HHHHHHHhCHHHHHHhCcccccchhcC-CCC
Confidence 567899999999999975 9999998752 1 223332 44455555543 345677763 356
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||+|+++|+|++||||||+||+.++..+.+.|+++.+ ++|+|++||+++ ..+.+|++++|++|++
T Consensus 471 ~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~-~~tvIiitHr~~--~~~~~D~ii~l~~G~i 547 (588)
T PRK13657 471 QLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMK-GRTTFIIAHRLS--TVRNADRILVFDNGRV 547 (588)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhc-CCEEEEEEecHH--HHHhCCEEEEEECCEE
Confidence 7999999999999999999999999999999999999999999998854 799999999985 3467999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|+.++..
T Consensus 548 ~~~g~~~~l~ 557 (588)
T PRK13657 548 VESGSFDELV 557 (588)
T ss_pred EEeCCHHHHH
Confidence 9999987764
No 281
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-41 Score=367.92 Aligned_cols=205 Identities=20% Similarity=0.367 Sum_probs=177.0
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-----hccccEEEEecCC---CCCCCC
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-----QMTRNTGFVTQED---VLSPYL 136 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~---~l~~~l 136 (508)
.+++|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..++.++|++|++ .+++.+
T Consensus 267 ~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 346 (501)
T PRK11288 267 GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH 346 (501)
T ss_pred CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC
Confidence 48999999999999999999999999999999999999999999999998642 2346799999986 488899
Q ss_pred CHHHHHHHHHHhcC-CCC--CCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 010509 137 TVTETMVFTALLQL-PNS--FTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLD 212 (508)
Q Consensus 137 Tv~E~l~~~~~l~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLD 212 (508)
|+.|++.+...... +.. ....+.+++++++++.+|+. +..++.++ .|||||||||+||++|+.+|++||||
T Consensus 347 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~qrl~la~al~~~p~lllLD 421 (501)
T PRK11288 347 SVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIM-----NLSGGNQQKAILGRWLSEDMKVILLD 421 (501)
T ss_pred CHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccc-----cCCHHHHHHHHHHHHHccCCCEEEEc
Confidence 99999987532111 001 12233346788999999994 67777765 89999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 213 EPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 213 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
|||+|||+.++.++++.|++++++|.|||++|||++ .+.++||++++|++|++++.|+++++
T Consensus 422 EPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~-~~~~~~d~i~~l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 422 EPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP-EVLGVADRIVVMREGRIAGELAREQA 483 (501)
T ss_pred CCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHhhCCEEEEEECCEEEEEEccccC
Confidence 999999999999999999999888999999999986 57799999999999999999988753
No 282
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3e-41 Score=318.83 Aligned_cols=171 Identities=27% Similarity=0.483 Sum_probs=154.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|+++++ +|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~~-----------------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~ 66 (182)
T cd03215 4 VLEVRGLSVKG-----------------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTR 66 (182)
T ss_pred EEEEeccEEEe-----------------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCc
Confidence 58889998752 7999999999999999999999999999999999999999999999998743
Q ss_pred -----hccccEEEEecCC---CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC
Q 010509 118 -----QMTRNTGFVTQED---VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~---~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 189 (508)
..++.++|++|++ .+++.+|++||+.+... ||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~----------------------------------------LS 106 (182)
T cd03215 67 RSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL----------------------------------------LS 106 (182)
T ss_pred cCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------cC
Confidence 2356899999984 57888999999876420 89
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|+|+|+++|+++ .+.+++|++++|++|++
T Consensus 107 ~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 107 GGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD-ELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999999999877899999999986 57789999999999974
No 283
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=2e-41 Score=370.95 Aligned_cols=217 Identities=29% Similarity=0.469 Sum_probs=180.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++. +++++|+|+|+++++||.++|+||||||||||+++|+|+++|++|+|.+||+++..
T Consensus 316 ~i~~~~v~~~y~~-----------~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~ 384 (544)
T TIGR01842 316 HLSVENVTIVPPG-----------GKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQ 384 (544)
T ss_pred eEEEEEEEEEcCC-----------CCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhh
Confidence 5999999999752 13578999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHH-----HHHHHHHHcCCCcccccccCCCCCCcc
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIK-----CAEAVMTELGLSECKNSLIGGPLTRGV 188 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~vg~~~~~~L 188 (508)
..++.++||+|++.+++. |++||+.+.. ...++++..+ ..++.++.+ .+-.|+.+| +....|
T Consensus 385 ~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~-----~~~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~-~~g~~L 455 (544)
T TIGR01842 385 WDRETFGKHIGYLPQDVELFPG-TVAENIARFG-----ENADPEKIIEAAKLAGVHELILRL--PDGYDTVIG-PGGATL 455 (544)
T ss_pred CCHHHHhhheEEecCCcccccc-cHHHHHhccC-----CCCCHHHHHHHHHHhChHHHHHhC--ccccccccC-CCcCCC
Confidence 467889999999999986 9999997532 1123332211 122333333 223456665 345789
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
|||||||++|||||+++|++++|||||||||+.++.++.+.|+++.++|+|+|+++|+++ ..+.+|++++|++|++++
T Consensus 456 SgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~--~~~~~d~i~~l~~G~i~~ 533 (544)
T TIGR01842 456 SGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPS--LLGCVDKILVLQDGRIAR 533 (544)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHH--HHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999999999999999767899999999986 346799999999999999
Q ss_pred EcChhhHH
Q 010509 269 SGEASGAM 276 (508)
Q Consensus 269 ~G~~~~~~ 276 (508)
.|+.++..
T Consensus 534 ~g~~~~l~ 541 (544)
T TIGR01842 534 FGERDEVL 541 (544)
T ss_pred eCCHHHHh
Confidence 99987764
No 284
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.1e-41 Score=384.28 Aligned_cols=221 Identities=28% Similarity=0.458 Sum_probs=186.9
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|+.|+|+.+ .+.+||+|+|+.|++|+.+||+|||||||||++++|.+.+.|++|+|.++|.++.
T Consensus 349 g~ief~nV~FsYPsR----------pdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~ 418 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSR----------PDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIR 418 (1228)
T ss_pred cceEEEEEEecCCCC----------CcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccch
Confidence 469999999998732 2568999999999999999999999999999999999999999999999999986
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH---HHHcCCCcccccccCCCCCCccC
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAV---MTELGLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~---l~~lgL~~~~~~~vg~~~~~~LS 189 (508)
. ..|.+||.|.|+|.+|. .|++||+.|+. ++.++++..+..+.. --...|.+-.||.+|...+ +||
T Consensus 419 ~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~-----~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~-qLS 491 (1228)
T KOG0055|consen 419 NLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGK-----PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGV-QLS 491 (1228)
T ss_pred hcchHHHHhhcCeeeechhhhc-ccHHHHHhcCC-----CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCC-CCC
Confidence 4 46789999999998886 59999999863 123343333222111 1113466778999996544 599
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||++|||||+.+|+|||||||||+||+.+...+.+.|++.. +|+|.|+++|+++ .+.+ +|++++|++|+|++.
T Consensus 492 GGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~-~grTTivVaHRLS-tIrn-aD~I~v~~~G~IvE~ 568 (1228)
T KOG0055|consen 492 GGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS-KGRTTIVVAHRLS-TIRN-ADKIAVMEEGKIVEQ 568 (1228)
T ss_pred hHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh-cCCeEEEEeeehh-hhhc-cCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999998875 5899999999997 4645 999999999999999
Q ss_pred cChhhHHH
Q 010509 270 GEASGAMN 277 (508)
Q Consensus 270 G~~~~~~~ 277 (508)
|+.+|++.
T Consensus 569 G~h~ELi~ 576 (1228)
T KOG0055|consen 569 GTHDELIA 576 (1228)
T ss_pred cCHHHHHh
Confidence 99998865
No 285
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7.2e-41 Score=322.27 Aligned_cols=198 Identities=21% Similarity=0.321 Sum_probs=165.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++.. .+.+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 6 ~l~~~~l~~~~~~~-----------~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~ 74 (207)
T cd03369 6 EIEVENLSVRYAPD-----------LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDIST 74 (207)
T ss_pred eEEEEEEEEEeCCC-----------CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHH
Confidence 58899999987510 2469999999999999999999999999999999999999999999999998742
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
..++.++|++|++.+++ .|++||+.+.. .... +.+.+.++ + ++ .++.||||||
T Consensus 75 ~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~------~~~~----~~~~~~l~---~----~~-----~~~~LS~G~~ 131 (207)
T cd03369 75 IPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFD------EYSD----EEIYGALR---V----SE-----GGLNLSQGQR 131 (207)
T ss_pred CCHHHHHhhEEEEecCCcccC-ccHHHHhcccC------CCCH----HHHHHHhh---c----cC-----CCCcCCHHHH
Confidence 34668999999998887 59999996531 1122 12333333 2 22 3458999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
||++|||+|+.+|++++|||||+|||+.++..+.+.|+++. +|+|+|++||++.. +.. +|++++|++|+++..|++
T Consensus 132 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~-~~~tiii~th~~~~-~~~-~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 132 QLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF-TNSTILTIAHRLRT-IID-YDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCCHHH-Hhh-CCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999999999999999985 48999999999874 544 899999999999988763
No 286
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-42 Score=357.28 Aligned_cols=215 Identities=28% Similarity=0.495 Sum_probs=187.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++|++. ..++|+|+|+++++||.+||+|+||||||||++.|+|-.+|++|+|++||.++..
T Consensus 336 ~l~~~~vsF~y~~~-----------~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~ 404 (573)
T COG4987 336 ALELRNVSFTYPGQ-----------QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIAS 404 (573)
T ss_pred eeeeccceeecCCC-----------ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhh
Confidence 69999999998732 3579999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK-------NSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~ 186 (508)
..++.+++++|..++|.. |+++||..+. | +.+++ .+.++++++||++.. |+.+| +..+
T Consensus 405 l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~----~-~AsDE----el~~aL~qvgL~~l~~~~p~gl~t~lg-e~G~ 473 (573)
T COG4987 405 LDEQALRETISVLTQRVHLFSG-TLRDNLRLAN----P-DASDE----ELWAALQQVGLEKLLESAPDGLNTWLG-EGGR 473 (573)
T ss_pred CChhhHHHHHhhhccchHHHHH-HHHHHHhhcC----C-CCCHH----HHHHHHHHcCHHHHHHhChhhhhchhc-cCCC
Confidence 367889999999999986 9999998763 2 23443 356778888886543 55666 4567
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||+|++|.++++|||||.|||+.+..++++.|.+-++ |+|+|++||+... + +.||||++|++|++
T Consensus 474 ~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~-~kTll~vTHrL~~-l-e~~drIivl~~Gki 550 (573)
T COG4987 474 RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE-GKTLLMVTHRLRG-L-ERMDRIIVLDNGKI 550 (573)
T ss_pred cCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc-CCeEEEEeccccc-H-hhcCEEEEEECCee
Confidence 8999999999999999999999999999999999999999999998765 8999999999874 4 56899999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+.+|+..+...
T Consensus 551 ie~G~~~~Ll~ 561 (573)
T COG4987 551 IEEGTHAELLA 561 (573)
T ss_pred eecCCHHhhhc
Confidence 99999988764
No 287
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=1.9e-41 Score=319.59 Aligned_cols=175 Identities=33% Similarity=0.598 Sum_probs=153.2
Q ss_pred EEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--
Q 010509 40 KFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-- 117 (508)
Q Consensus 40 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-- 117 (508)
+++|++++++ ++.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 ~~~~l~~~~~-------------~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~ 67 (180)
T cd03214 1 EVENLSVGYG-------------GRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLS 67 (180)
T ss_pred CeeEEEEEEC-------------CeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCC
Confidence 3678888764 3569999999999999999999999999999999999999999999999998742
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.++|++| +++.+|+.+..++.+ +.||||||||
T Consensus 68 ~~~~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~~-----~~LS~G~~qr 105 (180)
T cd03214 68 PKELARKIAYVPQ-------------------------------------ALELLGLAHLADRPF-----NELSGGERQR 105 (180)
T ss_pred HHHHHHHHhHHHH-------------------------------------HHHHcCCHhHhcCCc-----ccCCHHHHHH
Confidence 23446778877 566677776655544 4899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
++|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+|+|++||+++ .+.+++|++++|++|++++.|
T Consensus 106 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 106 VLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLN-LAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999876 899999999986 566899999999999998654
No 288
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=3.7e-41 Score=366.01 Aligned_cols=204 Identities=21% Similarity=0.283 Sum_probs=174.2
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-----hccccEEEEecCC---CCCCCCC
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-----QMTRNTGFVTQED---VLSPYLT 137 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~---~l~~~lT 137 (508)
+|+|+|+++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++.. ..++.++|++|++ .+++.+|
T Consensus 278 ~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t 357 (510)
T PRK15439 278 GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAP 357 (510)
T ss_pred CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCc
Confidence 5899999999999999999999999999999999999999999999998743 1245799999984 4888899
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010509 138 VTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS 216 (508)
Q Consensus 138 v~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPts 216 (508)
+.|++........+......+.+++++++++.+||. +..++.++ +|||||||||+||++|+.+|++|||||||+
T Consensus 358 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~kqrl~la~al~~~p~lLlLDEPt~ 432 (510)
T PRK15439 358 LAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAAR-----TLSGGNQQKVLIAKCLEASPQLLIVDEPTR 432 (510)
T ss_pred HHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccc-----cCCcHHHHHHHHHHHHhhCCCEEEECCCCc
Confidence 999986431111110111223345688999999997 67777765 899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 217 GLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 217 gLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
|||+.++..+.+.|++++++|.|||++|||+. .+.++||++++|++|+++..|+++++
T Consensus 433 gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~-~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 433 GVDVSARNDIYQLIRSIAAQNVAVLFISSDLE-EIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred CcChhHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEEccccC
Confidence 99999999999999999888999999999986 57889999999999999999987654
No 289
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=4.2e-41 Score=378.22 Aligned_cols=216 Identities=25% Similarity=0.445 Sum_probs=182.7
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++++|+. +++.+|+|+|+++++||.+||+|+||||||||+|+|+|+++|++|+|.+||+++.
T Consensus 454 ~~i~~~~vsf~y~~-----------~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~ 522 (694)
T TIGR01846 454 GAITFENIRFRYAP-----------DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLA 522 (694)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehh
Confidence 36999999999852 1356999999999999999999999999999999999999999999999999985
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCC
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-------ECKNSLIGGPLT 185 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~ 185 (508)
+ .+|+.++||+|++.+++. |++||+.++. + ..+++ .+.++++..++. +-.||.+|+ ..
T Consensus 523 ~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~----~-~~~~~----~i~~a~~~~~l~~~i~~lp~gl~t~i~~-~g 591 (694)
T TIGR01846 523 IADPAWLRRQMGVVLQENVLFSR-SIRDNIALCN----P-GAPFE----HVIHAAKLAGAHDFISELPQGYNTEVGE-KG 591 (694)
T ss_pred hCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCC----C-CCCHH----HHHHHHHHcChHHHHHhCcCccCcEecC-CC
Confidence 4 567889999999999875 9999998642 1 22333 334445555543 335777764 35
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.+||||||||++|||||+++|++|+||||||+||+.++.++.+.|+++. +++|+|++||+++. + ..||++++|++|+
T Consensus 592 ~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~-~-~~~d~ii~l~~G~ 668 (694)
T TIGR01846 592 ANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC-RGRTVIIIAHRLST-V-RACDRIIVLEKGQ 668 (694)
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh-CCCEEEEEeCChHH-H-HhCCEEEEEeCCE
Confidence 7899999999999999999999999999999999999999999999985 57999999999863 4 5699999999999
Q ss_pred EEEEcChhhHHH
Q 010509 266 PLYSGEASGAMN 277 (508)
Q Consensus 266 iv~~G~~~~~~~ 277 (508)
+++.|+.++..+
T Consensus 669 i~~~g~~~~l~~ 680 (694)
T TIGR01846 669 IAESGRHEELLA 680 (694)
T ss_pred EEEeCCHHHHHH
Confidence 999999887653
No 290
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=2.6e-41 Score=371.81 Aligned_cols=215 Identities=23% Similarity=0.420 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++.. ++.+|+|+|+++++||.++|+|+||||||||+++|+|+.+|.+|+|.+||+++++
T Consensus 330 ~i~~~~v~f~y~~~-----------~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~ 398 (571)
T TIGR02203 330 DVEFRNVTFRYPGR-----------DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLAD 398 (571)
T ss_pred eEEEEEEEEEcCCC-----------CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHh
Confidence 59999999997521 2569999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~ 186 (508)
..++.++||+|++.+++. |++||+.++. +++.++ ++++++++.+|+.+ -.||.+|+. .+
T Consensus 399 ~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~----~~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~~-g~ 468 (571)
T TIGR02203 399 YTLASLRRQVALVSQDVVLFND-TIANNIAYGR----TEQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGEN-GV 468 (571)
T ss_pred cCHHHHHhhceEEccCcccccc-cHHHHHhcCC----CCCCCH----HHHHHHHHHcChHHHHHhCcCcccceecCC-CC
Confidence 567889999999999875 9999998752 112233 34566677766643 356777743 56
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||+++.+|+|++||||||+||+.++..+++.|++++ +++|+|++||+++ ..+.||+|++|++|++
T Consensus 469 ~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~-~~~tiIiitH~~~--~~~~~D~ii~l~~g~i 545 (571)
T TIGR02203 469 LLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM-QGRTTLVIAHRLS--TIEKADRIVVMDDGRI 545 (571)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh-CCCEEEEEehhhH--HHHhCCEEEEEeCCEE
Confidence 899999999999999999999999999999999999999999999985 4699999999985 4578999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|+.++..
T Consensus 546 ~~~g~~~~l~ 555 (571)
T TIGR02203 546 VERGTHNELL 555 (571)
T ss_pred EeeCCHHHHH
Confidence 9999988764
No 291
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-40 Score=315.31 Aligned_cols=230 Identities=29% Similarity=0.385 Sum_probs=203.4
Q ss_pred eeEEEEeEEEEEeccccccCccccccc-ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--CCcccEEEECCE
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEE-KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRINGRITYNGK 113 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~-~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--~~~~G~I~~~G~ 113 (508)
.+|+++||++++. + +.||++||++|++||+.+||||||||||||.++|+|.- .+++|+|.++|+
T Consensus 2 ~~L~I~dLhv~v~-------------~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~Ge 68 (251)
T COG0396 2 MMLEIKDLHVEVE-------------GKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGE 68 (251)
T ss_pred ceeEEeeeEEEec-------------CchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCc
Confidence 3699999999986 3 58999999999999999999999999999999999975 789999999999
Q ss_pred eCCh-----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCc
Q 010509 114 PFSN-----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRG 187 (508)
Q Consensus 114 ~~~~-----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~ 187 (508)
++.. ..|+.+..-+|.|.=+|..|+.+.|..+...+........+..+.+++.++.+++.+ .+++.++ -+
T Consensus 69 dI~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN----~G 144 (251)
T COG0396 69 DILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVN----EG 144 (251)
T ss_pred ccccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccC----CC
Confidence 9853 456678999999999999999999998776543221113456678899999999987 6777776 48
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhc--cEEEEEeCCe
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMF--HKVLLLSEGY 265 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~--D~v~lL~~G~ 265 (508)
+|||||||..|+..++.+|++.+||||-||||..+-+.+-+.+++++++|.+++++||..+ +..+. |+|.+|.+|+
T Consensus 145 FSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r--ll~~i~pD~vhvl~~Gr 222 (251)
T COG0396 145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR--LLDYIKPDKVHVLYDGR 222 (251)
T ss_pred cCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH--HHhhcCCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999999999999999964 55666 9999999999
Q ss_pred EEEEcChhhHHHHHHhcCCCC
Q 010509 266 PLYSGEASGAMNYFASIGYCP 286 (508)
Q Consensus 266 iv~~G~~~~~~~~f~~~g~~~ 286 (508)
|+..|.+ ++.++.++.||.|
T Consensus 223 Iv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 223 IVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred EEecCCH-HHHHHHHHhchHH
Confidence 9999999 8999999999965
No 292
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=7.2e-41 Score=343.93 Aligned_cols=186 Identities=28% Similarity=0.439 Sum_probs=166.0
Q ss_pred EECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHH
Q 010509 82 MLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEK 159 (508)
Q Consensus 82 ilG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~ 159 (508)
|+||||||||||||+|+|+.+|++|+|.++|+++.. ..++.++|++|++.+++.+||+||+.|+...+ ..++++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~ 77 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMR---KVPRAEI 77 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhc---CCCHHHH
Confidence 689999999999999999999999999999998743 23567999999999999999999999876432 2344555
Q ss_pred HHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CC
Q 010509 160 IKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GR 238 (508)
Q Consensus 160 ~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~ 238 (508)
+++++++++.+||.+..++.+ ++|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|++++++ |+
T Consensus 78 ~~~~~~~l~~~~l~~~~~~~~-----~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~ 152 (325)
T TIGR01187 78 KPRVLEALRLVQLEEFADRKP-----HQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGI 152 (325)
T ss_pred HHHHHHHHHHcCCcchhcCCh-----hhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCC
Confidence 677899999999998887765 489999999999999999999999999999999999999999999999765 89
Q ss_pred EEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHH
Q 010509 239 TIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 239 tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
|+|++||++. ++..++||+++|++|+++..|+++++.
T Consensus 153 tiiivTHd~~-e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 153 TFVFVTHDQE-EAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred EEEEEeCCHH-HHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999986 577899999999999999999988774
No 293
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=1.5e-40 Score=335.42 Aligned_cols=234 Identities=27% Similarity=0.484 Sum_probs=204.5
Q ss_pred CceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe
Q 010509 35 HPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP 114 (508)
Q Consensus 35 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~ 114 (508)
.++.++.+|+...++.+.+.+.. ......++++||+++++||-++|+|+||||||||=.+|.+++++. |+|.|+|++
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r--~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~ 349 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRR--TVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQD 349 (534)
T ss_pred CCceEEecceEEEEecCCccccc--cchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcc
Confidence 46789999999998876443221 223467999999999999999999999999999999999998765 999999999
Q ss_pred CCh-------hccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 115 FSN-------QMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 115 ~~~-------~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
+.. -.|+.+-.||||| .|.|.+||.|-+.-+....-| ..++.++.+++.++|+++||+... .+++|
T Consensus 350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~----r~RYP 424 (534)
T COG4172 350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPAT----RNRYP 424 (534)
T ss_pred ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhH----hhcCC
Confidence 853 2467899999998 589999999999988766543 468899999999999999997532 13567
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
++.|||||||++|||||+.+|++++||||||.||-.-+.+++++|++|.++ |.+-++++||+. .+..+||+|+||++|
T Consensus 425 hEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~-VvrAl~~~viVm~~G 503 (534)
T COG4172 425 HEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLA-VVRALCHRVIVMRDG 503 (534)
T ss_pred cccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHH-HHHHhhceEEEEeCC
Confidence 899999999999999999999999999999999999999999999999764 999999999986 788999999999999
Q ss_pred eEEEEcChhhHHH
Q 010509 265 YPLYSGEASGAMN 277 (508)
Q Consensus 265 ~iv~~G~~~~~~~ 277 (508)
+||+.|+.+++++
T Consensus 504 kiVE~G~~~~if~ 516 (534)
T COG4172 504 KIVEQGPTEAVFA 516 (534)
T ss_pred EEeeeCCHHHHhc
Confidence 9999999987743
No 294
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=5.9e-41 Score=369.46 Aligned_cols=215 Identities=27% Similarity=0.465 Sum_probs=181.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++.. .++.+|+|+|++++|||.++|+||||||||||+|+|+|+++|.+|+|.+||.++++
T Consensus 337 ~i~~~~v~f~y~~~----------~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~ 406 (576)
T TIGR02204 337 EIEFEQVNFAYPAR----------PDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQ 406 (576)
T ss_pred eEEEEEEEEECCCC----------CCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHh
Confidence 59999999997521 12579999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~ 186 (508)
.+++.++|+||++.+++. |++||+.++. + ..++ ++++++++..|+.+ -.|+.+|+ ...
T Consensus 407 ~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~----~-~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~-~g~ 475 (576)
T TIGR02204 407 LDPAELRARMALVPQDPVLFAA-SVMENIRYGR----P-DATD----EEVEAAARAAHAHEFISALPEGYDTYLGE-RGV 475 (576)
T ss_pred cCHHHHHHhceEEccCCccccc-cHHHHHhcCC----C-CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCC-CCC
Confidence 467789999999999875 9999998742 1 1222 34556666666543 34566653 356
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||+++.+|++++||||||+||+.++..+++.|+++. +++|+|++||+++ ....+|++++|++|++
T Consensus 476 ~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~-~~~t~IiitH~~~--~~~~~d~vi~l~~g~~ 552 (576)
T TIGR02204 476 TLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM-KGRTTLIIAHRLA--TVLKADRIVVMDQGRI 552 (576)
T ss_pred cCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh-CCCEEEEEecchH--HHHhCCEEEEEECCEE
Confidence 799999999999999999999999999999999999999999999985 4799999999985 3467999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|+.++..
T Consensus 553 ~~~g~~~~l~ 562 (576)
T TIGR02204 553 VAQGTHAELI 562 (576)
T ss_pred EeeecHHHHH
Confidence 9999988753
No 295
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1e-40 Score=367.21 Aligned_cols=214 Identities=25% Similarity=0.420 Sum_probs=181.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++. +++.+|+|+|+++++||.++|+||||||||||+++|+|+++|++|+|.+||+++..
T Consensus 313 ~I~~~~v~~~y~~-----------~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~ 381 (569)
T PRK10789 313 ELDVNIRQFTYPQ-----------TDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTK 381 (569)
T ss_pred cEEEEEEEEECCC-----------CCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhh
Confidence 5899999998752 13569999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-------ECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~ 186 (508)
.+++.++|++|++.+++. |++||+.++. + ..+++ .++++++..++. +-.||.+|+ ...
T Consensus 382 ~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~----~-~~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~-~g~ 450 (569)
T PRK10789 382 LQLDSWRSRLAVVSQTPFLFSD-TVANNIALGR----P-DATQQ----EIEHVARLASVHDDILRLPQGYDTEVGE-RGV 450 (569)
T ss_pred CCHHHHHhheEEEccCCeeccc-cHHHHHhcCC----C-CCCHH----HHHHHHHHcCCHHHHHhCcCcccceecC-CCC
Confidence 467889999999999975 9999998742 1 12332 334455555543 345777764 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||||+++|++++||||||+||+.++..+.+.|+++. +|+|+|++||+++. + +.+|++++|++|++
T Consensus 451 ~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tii~itH~~~~-~-~~~d~i~~l~~G~i 527 (569)
T PRK10789 451 MLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG-EGRTVIISAHRLSA-L-TEASEILVMQHGHI 527 (569)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh-CCCEEEEEecchhH-H-HcCCEEEEEeCCEE
Confidence 899999999999999999999999999999999999999999999985 58999999999863 3 56999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
+..|+.++..
T Consensus 528 ~~~g~~~~l~ 537 (569)
T PRK10789 528 AQRGNHDQLA 537 (569)
T ss_pred EEecCHHHHH
Confidence 9999988764
No 296
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.4e-41 Score=329.14 Aligned_cols=194 Identities=28% Similarity=0.440 Sum_probs=174.9
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--------hccccEEEEecCCCCCCCCCHHH
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--------QMTRNTGFVTQEDVLSPYLTVTE 140 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--------~~~~~i~yv~Q~~~l~~~lTv~E 140 (508)
++++..+.-.++||-|+||||||||+|+|+|+.+|++|.|.+||+-+.+ ..+|++||||||..|||++||+.
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 6788887757999999999999999999999999999999999986532 23678999999999999999999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010509 141 TMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220 (508)
Q Consensus 141 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~ 220 (508)
||.|+.... .....+++.+.||++|..+++.. .|||||||||+|+|||++.|++|++|||.+.||-
T Consensus 96 NL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P~-----~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~ 161 (352)
T COG4148 96 NLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYPG-----TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDL 161 (352)
T ss_pred chhhhhccc---------chHhHHHHHHHhCcHHHHhhCCC-----ccCcchhhHHHHHHHHhcCCCeeeecCchhhccc
Confidence 999986321 23456789999999999987764 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHH
Q 010509 221 TIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMN 277 (508)
Q Consensus 221 ~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~ 277 (508)
.-+.+++-.|.+|+++ +..|+.+||.+. ++.+++|+|++|++|++..+|+.+++.+
T Consensus 162 ~RK~EilpylERL~~e~~IPIlYVSHS~~-Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 162 PRKREILPYLERLRDEINIPILYVSHSLD-EVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred chhhHHHHHHHHHHHhcCCCEEEEecCHH-HHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 9999999999999976 889999999986 5889999999999999999999998754
No 297
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=1.6e-40 Score=344.10 Aligned_cols=216 Identities=26% Similarity=0.365 Sum_probs=195.1
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++.+++++.++ ...+++|||++|++||+.||+|+||||||||+++|.|.+.|++|+|.++|+++.
T Consensus 3 ~~l~~~~itK~f~-------------~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~ 69 (501)
T COG3845 3 PALEMRGITKRFP-------------GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVR 69 (501)
T ss_pred ceEEEeccEEEcC-------------CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEec
Confidence 3588999999876 467999999999999999999999999999999999999999999999999874
Q ss_pred h-----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 117 N-----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 117 ~-----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
- ..+..||+|.|+..|+|++||.||+..+..-......+.++.+++++++.+..||.=..|.+++ .||-|
T Consensus 70 ~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~-----dLsVG 144 (501)
T COG3845 70 IKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVA-----DLSVG 144 (501)
T ss_pred cCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceee-----cCCcc
Confidence 1 3566899999999999999999999987643222234677788899999999999877888876 89999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
|||||.|-++|..+|++|+|||||+-|-|....++++.|++++++|+|||++||.+. ++.+.|||+.+|.+|+++-.-+
T Consensus 145 ~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~-Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 145 EQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLK-EVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred hhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHH-HHHHhhCeeEEEeCCeEEeeec
Confidence 999999999999999999999999999999999999999999999999999999997 5889999999999999886555
No 298
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=2.8e-40 Score=364.60 Aligned_cols=214 Identities=25% Similarity=0.373 Sum_probs=178.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++. ++++|+|+|+++++||.++|+||||||||||+++|+|..+|++|+|.++|.++.+
T Consensus 334 ~i~~~~v~~~y~~------------~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 401 (585)
T TIGR01192 334 AVEFRHITFEFAN------------SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINT 401 (585)
T ss_pred eEEEEEEEEECCC------------CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhh
Confidence 5999999998751 2458999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL-------SECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~ 186 (508)
..++.++||+|++.+++ .|++||+.++. + ..++++.. +.++..++ .+..|+.+|. ...
T Consensus 402 ~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~----~-~~~~~~~~----~a~~~~~~~~~i~~l~~g~~t~~~~-~~~ 470 (585)
T TIGR01192 402 VTRESLRKSIATVFQDAGLFN-RSIRENIRLGR----E-GATDEEVY----EAAKAAAAHDFILKRSNGYDTLVGE-RGN 470 (585)
T ss_pred CCHHHHHhheEEEccCCccCc-ccHHHHHhcCC----C-CCCHHHHH----HHHHHhCcHHHHHhccccccchhcC-CCC
Confidence 46788999999999887 59999998752 1 22333322 23333333 2334566653 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||+|+.+|++++||||||+||+.++..+.+.|+++. +++|+|++||+++. + ..+|++++|++|++
T Consensus 471 ~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~-~~~tvI~isH~~~~-~-~~~d~i~~l~~G~i 547 (585)
T TIGR01192 471 RLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR-KNRTTFIIAHRLST-V-RNADLVLFLDQGRL 547 (585)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcChHH-H-HcCCEEEEEECCEE
Confidence 899999999999999999999999999999999999999999999885 48999999999863 4 56999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|+.++..+
T Consensus 548 ~~~g~~~~l~~ 558 (585)
T TIGR01192 548 IEKGSFQELIQ 558 (585)
T ss_pred EEECCHHHHHH
Confidence 99999887653
No 299
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=3.5e-40 Score=314.86 Aligned_cols=191 Identities=20% Similarity=0.326 Sum_probs=162.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~ 118 (508)
++++|++++++ ++.+++ +|+++++||+++|+|+||||||||+++|+|+.+|++|+|.++|.++...
T Consensus 2 l~~~~l~~~~~-------------~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~ 67 (195)
T PRK13541 2 LSLHQLQFNIE-------------QKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNI 67 (195)
T ss_pred eEEEEeeEEEC-------------CcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChh
Confidence 78899999874 234555 9999999999999999999999999999999999999999999987543
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHH
Q 010509 119 MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSI 198 (508)
Q Consensus 119 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 198 (508)
.++.++|++|++.+++.+||.||+.+..... . ..++++++++.+++.+..++.+ +.||||||||++|
T Consensus 68 ~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~---~-----~~~~~~~~l~~~~l~~~~~~~~-----~~LS~G~~~rl~l 134 (195)
T PRK13541 68 AKPYCTYIGHNLGLKLEMTVFENLKFWSEIY---N-----SAETLYAAIHYFKLHDLLDEKC-----YSLSSGMQKIVAI 134 (195)
T ss_pred hhhhEEeccCCcCCCccCCHHHHHHHHHHhc---c-----cHHHHHHHHHHcCCHhhhccCh-----hhCCHHHHHHHHH
Confidence 3456999999988888899999998754321 1 1345678899999987777665 4899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEE
Q 010509 199 GQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKV 258 (508)
Q Consensus 199 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v 258 (508)
|++|+.+|++++|||||+|||+.++..+.+.|++..++|+|+|++||+++. + ..+|-+
T Consensus 135 a~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~-i-~~~~~~ 192 (195)
T PRK13541 135 ARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESS-I-KSAQIL 192 (195)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccc-c-chhhee
Confidence 999999999999999999999999999999998877779999999999863 3 336654
No 300
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.1e-40 Score=318.27 Aligned_cols=196 Identities=28% Similarity=0.485 Sum_probs=155.5
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~ 118 (508)
++++||+++++... ...+.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~--------~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g------ 66 (204)
T cd03250 1 ISVEDASFTWDSGE--------QETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG------ 66 (204)
T ss_pred CEEeEEEEecCCCC--------ccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC------
Confidence 46899998875110 0013699999999999999999999999999999999999999999999998
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCCCCCccCHH
Q 010509 119 MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK-------NSLIGGPLTRGVSGG 191 (508)
Q Consensus 119 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~LSGG 191 (508)
.++|++|++.+++ .|++||+.+... ...+ ...+.++.+++.+.. ++... ..+++||||
T Consensus 67 ---~i~~~~q~~~l~~-~t~~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~lS~G 131 (204)
T cd03250 67 ---SIAYVSQEPWIQN-GTIRENILFGKP------FDEE----RYEKVIKACALEPDLEILPDGDLTEIG-EKGINLSGG 131 (204)
T ss_pred ---EEEEEecCchhcc-CcHHHHhccCCC------cCHH----HHHHHHHHcCcHHHHHhccCcccceec-CCCCcCCHH
Confidence 5999999998885 699999987421 1111 122333343432221 11222 235689999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS-ILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
||||++|||+|+.+|++++|||||+|||+.++..+.+ ++++++++|+|||++||+++ .+.. +|++++|++|+
T Consensus 132 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~-~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 132 QKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQ-LLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHH-HHhh-CCEEEEEeCCC
Confidence 9999999999999999999999999999999999998 56777666899999999986 4555 99999999985
No 301
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.2e-40 Score=309.93 Aligned_cols=167 Identities=33% Similarity=0.602 Sum_probs=148.6
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++.++.. +..+++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~~~-----------~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~ 69 (171)
T cd03228 1 IEFKNVSFSYPGR-----------PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDL 69 (171)
T ss_pred CEEEEEEEEcCCC-----------CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhc
Confidence 4678998886410 1369999999999999999999999999999999999999999999999998742
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
..++.++|++|++.+++ .|+.||+ |||||||
T Consensus 70 ~~~~~~~~i~~~~~~~~~~~-~t~~e~l---------------------------------------------LS~G~~~ 103 (171)
T cd03228 70 DLESLRKNIAYVPQDPFLFS-GTIRENI---------------------------------------------LSGGQRQ 103 (171)
T ss_pred CHHHHHhhEEEEcCCchhcc-chHHHHh---------------------------------------------hCHHHHH
Confidence 34567999999988776 5888876 8999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
|++||++|+.+|++++|||||+|||+.++.++.+.|+++.+ ++|||++||++. .+.. ||++++|++|+
T Consensus 104 rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~-~~tii~~sh~~~-~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 104 RIAIARALLRDPPILILDEATSALDPETEALILEALRALAK-GKTVIVIAHRLS-TIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC-CCEEEEEecCHH-HHHh-CCEEEEEcCCC
Confidence 99999999999999999999999999999999999999964 799999999987 4556 99999999985
No 302
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=5.7e-40 Score=304.96 Aligned_cols=157 Identities=29% Similarity=0.460 Sum_probs=143.7
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ ++++++|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++..
T Consensus 1 l~~~~l~~~~~-------------~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~ 67 (163)
T cd03216 1 LELRGITKRFG-------------GVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFA 67 (163)
T ss_pred CEEEEEEEEEC-------------CeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcC
Confidence 46889998875 3569999999999999999999999999999999999999999999999998743
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
..++.++|++| ||||||
T Consensus 68 ~~~~~~~~~i~~~~q-----------------------------------------------------------LS~G~~ 88 (163)
T cd03216 68 SPRDARRAGIAMVYQ-----------------------------------------------------------LSVGER 88 (163)
T ss_pred CHHHHHhcCeEEEEe-----------------------------------------------------------cCHHHH
Confidence 23557889888 899999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
||++||++|+.+|++++|||||+|||+.++..+.+.|++++++|.|+|++||++. .+.+.+|++++|++|++++
T Consensus 89 qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~-~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 89 QMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLD-EVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999999999999999877999999999986 4778899999999999875
No 303
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=6.6e-40 Score=318.02 Aligned_cols=200 Identities=25% Similarity=0.434 Sum_probs=160.4
Q ss_pred EEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--
Q 010509 40 KFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-- 117 (508)
Q Consensus 40 ~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-- 117 (508)
.+.|+.+.++ +.+.+++|+||++++||+++|+|||||||||||++|+|+.+|++|+|.++|+++..
T Consensus 2 ~~~~~~~~~~------------~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~ 69 (218)
T cd03290 2 QVTNGYFSWG------------SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPS 69 (218)
T ss_pred eeeeeEEecC------------CCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCccccccc
Confidence 3567777654 13569999999999999999999999999999999999999999999999987632
Q ss_pred ------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------cccCCCC
Q 010509 118 ------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKN-------SLIGGPL 184 (508)
Q Consensus 118 ------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~ 184 (508)
..++.++|++|++.++ ..|++||+.+... ... +..+++++.+++.+..+ +..+ ..
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~------~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~ 137 (218)
T cd03290 70 FEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSP------FNK----QRYKAVTDACSLQPDIDLLPFGDQTEIG-ER 137 (218)
T ss_pred ccccchhhcceEEEEcCCCccc-cccHHHHHhhcCc------CCH----HHHHHHHHHhCcHHHHHhCcCccccCcc-cC
Confidence 1345799999999887 5799999976421 111 12334556666644322 1111 23
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS--ILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~--~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+..||||||||++||++|+.+|+++||||||+|||+.++..+++ +++.+.+.|.|+|++||+++. + ..+|++++|+
T Consensus 138 ~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~-~-~~~d~i~~l~ 215 (218)
T cd03290 138 GINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY-L-PHADWIIAMK 215 (218)
T ss_pred CCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH-H-hhCCEEEEec
Confidence 56899999999999999999999999999999999999999998 677776678999999999874 5 4699999999
Q ss_pred CCe
Q 010509 263 EGY 265 (508)
Q Consensus 263 ~G~ 265 (508)
+|+
T Consensus 216 ~G~ 218 (218)
T cd03290 216 DGS 218 (218)
T ss_pred CCC
Confidence 884
No 304
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=1.8e-39 Score=361.60 Aligned_cols=220 Identities=27% Similarity=0.435 Sum_probs=192.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++.. .+.+.+|+|+||++++||+++|+||||||||||+|+|+|+.+|++|+|.++|+++..
T Consensus 4 ~l~~~nl~~~y~~~---------~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~ 74 (648)
T PRK10535 4 LLELKDIRRSYPSG---------EEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVAT 74 (648)
T ss_pred EEEEeeEEEEeCCC---------CCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCc
Confidence 69999999987521 013569999999999999999999999999999999999999999999999998753
Q ss_pred ----h----ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC
Q 010509 118 ----Q----MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 118 ----~----~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 189 (508)
+ .++.++|++|++.+++.+|+.||+.+..... ..+.++.++++.++++.+||.+..|+.++ .||
T Consensus 75 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~l~~lgl~~~~~~~~~-----~LS 146 (648)
T PRK10535 75 LDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYA---GLERKQRLLRAQELLQRLGLEDRVEYQPS-----QLS 146 (648)
T ss_pred CCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCChhhhcCCcc-----cCC
Confidence 1 1467999999999999999999998765322 22345566788999999999988777664 899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++|+|+|++||+++ .+ +.|||+++|++|++++.
T Consensus 147 ~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~-~~-~~~d~i~~l~~G~i~~~ 224 (648)
T PRK10535 147 GGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQ-VA-AQAERVIEIRDGEIVRN 224 (648)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HH-HhCCEEEEEECCEEEee
Confidence 99999999999999999999999999999999999999999999877999999999986 34 56999999999999999
Q ss_pred cChhhHH
Q 010509 270 GEASGAM 276 (508)
Q Consensus 270 G~~~~~~ 276 (508)
|++++..
T Consensus 225 g~~~~~~ 231 (648)
T PRK10535 225 PPAQEKV 231 (648)
T ss_pred cCccccc
Confidence 9998775
No 305
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-40 Score=355.55 Aligned_cols=216 Identities=22% Similarity=0.377 Sum_probs=178.9
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|+++.. +.+|+|+|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++.
T Consensus 249 ~~i~~~~l~~~~---------------~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~ 313 (491)
T PRK10982 249 VILEVRNLTSLR---------------QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKIN 313 (491)
T ss_pred cEEEEeCccccc---------------CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECC
Confidence 368999988751 34899999999999999999999999999999999999999999999999874
Q ss_pred h-----hccccEEEEecCC---CCCCCCCHHHHHHHHHH--h-cCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCC
Q 010509 117 N-----QMTRNTGFVTQED---VLSPYLTVTETMVFTAL--L-QLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPL 184 (508)
Q Consensus 117 ~-----~~~~~i~yv~Q~~---~l~~~lTv~E~l~~~~~--l-~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~ 184 (508)
. ..++.++|++|++ .+++.+|+.+|..+... . ......+....+++++++++.+++. +..++.++
T Consensus 314 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 390 (491)
T PRK10982 314 NHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIG--- 390 (491)
T ss_pred CCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccc---
Confidence 3 2345699999985 47888998877432210 0 0000012233456788899999995 45566654
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
+|||||||||+||++|+.+|+||||||||+|||+.++..+++.|++++++|.|||++|||++ .+..+|||+++|++|
T Consensus 391 --~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~-~~~~~~d~v~~l~~g 467 (491)
T PRK10982 391 --SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP-ELLGITDRILVMSNG 467 (491)
T ss_pred --cCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH-HHHhhCCEEEEEECC
Confidence 89999999999999999999999999999999999999999999999888999999999986 577899999999999
Q ss_pred eEEEEcChh
Q 010509 265 YPLYSGEAS 273 (508)
Q Consensus 265 ~iv~~G~~~ 273 (508)
+++..++.+
T Consensus 468 ~i~~~~~~~ 476 (491)
T PRK10982 468 LVAGIVDTK 476 (491)
T ss_pred EEEEEEccc
Confidence 999777653
No 306
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-40 Score=356.54 Aligned_cols=210 Identities=25% Similarity=0.414 Sum_probs=176.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++++ ++++|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|.
T Consensus 1 ml~i~~ls~~~~-------------~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~---- 63 (530)
T PRK15064 1 MLSTANITMQFG-------------AKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN---- 63 (530)
T ss_pred CEEEEEEEEEeC-------------CcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC----
Confidence 378999999875 357999999999999999999999999999999999999999999999873
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHH-h-----------cCCCC-----------------CCHHHHHHHHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTAL-L-----------QLPNS-----------------FTEKEKIKCAEAVMT 168 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~-l-----------~~~~~-----------------~~~~~~~~~v~~~l~ 168 (508)
+.++|++|++.+++.+||+|++.++.. . ..+.. ....+.+++++++++
T Consensus 64 ---~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 140 (530)
T PRK15064 64 ---ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLL 140 (530)
T ss_pred ---CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence 359999999999999999999986421 0 00000 000123457889999
Q ss_pred HcCCCccc-ccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCc
Q 010509 169 ELGLSECK-NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247 (508)
Q Consensus 169 ~lgL~~~~-~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~ 247 (508)
.+||.+.. ++.+ .+|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++|||+
T Consensus 141 ~~gl~~~~~~~~~-----~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~---~~~tiiivsHd~ 212 (530)
T PRK15064 141 GVGIPEEQHYGLM-----SEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE---RNSTMIIISHDR 212 (530)
T ss_pred hCCCChhHhcCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh---CCCeEEEEeCCH
Confidence 99997643 3344 48999999999999999999999999999999999999999999864 589999999998
Q ss_pred chHHHhhccEEEEEeCCeE-EEEcChhhHH
Q 010509 248 SNMLYYMFHKVLLLSEGYP-LYSGEASGAM 276 (508)
Q Consensus 248 ~~~~~~~~D~v~lL~~G~i-v~~G~~~~~~ 276 (508)
+ .+.++||++++|++|++ ++.|++++..
T Consensus 213 ~-~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 213 H-FLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred H-HHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 6 57789999999999999 4889887654
No 307
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=3.5e-40 Score=359.93 Aligned_cols=187 Identities=32% Similarity=0.543 Sum_probs=160.4
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++|+|+. ++++|+|+|+++++||.+||+||||||||||+|+|+|+++|++|+|.+||+++.
T Consensus 333 ~~I~~~~vsf~Y~~------------~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~ 400 (529)
T TIGR02868 333 PTLELRDLSFGYPG------------SPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVS 400 (529)
T ss_pred ceEEEEEEEEecCC------------CCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhh
Confidence 36999999999851 245999999999999999999999999999999999999999999999999876
Q ss_pred h---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCC
Q 010509 117 N---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-------ECKNSLIGGPLTR 186 (508)
Q Consensus 117 ~---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~ 186 (508)
+ .+|+.++||+|++.+|+. |++||+.++. + ..++ ++++++++..++. +-.||.+|+ ...
T Consensus 401 ~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~----~-~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige-~G~ 469 (529)
T TIGR02868 401 SLQDELRRRISVFAQDAHLFDT-TVRDNLRLGR----P-DATD----EELWAALERVGLADWLRSLPDGLDTVLGE-GGA 469 (529)
T ss_pred hHHHHHHhheEEEccCcccccc-cHHHHHhccC----C-CCCH----HHHHHHHHHcCCHHHHHhCcccccchhcc-ccC
Confidence 3 567799999999999986 9999998852 1 2233 3355666666654 345888874 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCc
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~ 247 (508)
.||||||||++|||||+.+|+|++||||||+||+.+...+.+.|+++. +++|+|+++|++
T Consensus 470 ~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~-~~~TvIiItHrl 529 (529)
T TIGR02868 470 RLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL-SGKTVVVITHHL 529 (529)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc-CCCEEEEEecCC
Confidence 799999999999999999999999999999999999999999999864 479999999985
No 308
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.8e-40 Score=316.69 Aligned_cols=218 Identities=28% Similarity=0.465 Sum_probs=189.1
Q ss_pred CceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe
Q 010509 35 HPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP 114 (508)
Q Consensus 35 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~ 114 (508)
....|+++|++.+++ +|+||+|+|++|+|||-.+|+|||||||||||++++|..+|.+|.+.+.|++
T Consensus 28 ~~~li~l~~v~v~r~-------------gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~ 94 (257)
T COG1119 28 NEPLIELKNVSVRRN-------------GKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRR 94 (257)
T ss_pred CcceEEecceEEEEC-------------CEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeee
Confidence 345699999999875 6899999999999999999999999999999999999999999999999998
Q ss_pred CCh-----hccccEEEEecC--CCCCCCCCHHHHHHHHH--HhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 115 FSN-----QMTRNTGFVTQE--DVLSPYLTVTETMVFTA--LLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 115 ~~~-----~~~~~i~yv~Q~--~~l~~~lTv~E~l~~~~--~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
..+ +.|++||+|.-+ ..+.+..+|+|-+.-+. ..........++..+++..+++.+|+.+.+|+..+
T Consensus 95 ~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~---- 170 (257)
T COG1119 95 FGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFG---- 170 (257)
T ss_pred ccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchh----
Confidence 743 578999999753 44566778888775332 22222212345667889999999999999999887
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC--CCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG--GRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~--g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
.||-||||||-|||||+.+|.+||||||++|||...+..+++.|.+++.. +.++|++||+++ ++-..|++++++++
T Consensus 171 -~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~e-Ei~~~~th~lll~~ 248 (257)
T COG1119 171 -SLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAE-EIPPCFTHRLLLKE 248 (257)
T ss_pred -hcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchh-hcccccceEEEeeC
Confidence 89999999999999999999999999999999999999999999999865 899999999986 68899999999999
Q ss_pred CeEEEEcC
Q 010509 264 GYPLYSGE 271 (508)
Q Consensus 264 G~iv~~G~ 271 (508)
|+++++|.
T Consensus 249 g~v~~~g~ 256 (257)
T COG1119 249 GEVVAQGK 256 (257)
T ss_pred Cceeeccc
Confidence 99999874
No 309
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2.2e-39 Score=313.82 Aligned_cols=195 Identities=18% Similarity=0.210 Sum_probs=164.0
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEE-ECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRIT-YNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~-~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
++|+|||+++++||+++|+||||||||||+|+|+|+.+|++|+|. ++|.... +.+++.+++.+|++||+.
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~---------~~~~~~l~~~ltv~enl~ 71 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP---------LGANSFILPGLTGEENAR 71 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec---------cccccccCCcCcHHHHHH
Confidence 379999999999999999999999999999999999999999997 7775431 234567889999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIA 223 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~ 223 (508)
+..... ..+.++. .+.+.+.++|.+..++.++ .||||||||++||++|+.+|++++|||||+++|+.++
T Consensus 72 ~~~~~~---~~~~~~~---~~~~~~~~~l~~~~~~~~~-----~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~ 140 (213)
T PRK15177 72 MMASLY---GLDGDEF---SHFCYQLTQLEQCYTDRVS-----EYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQ 140 (213)
T ss_pred HHHHHc---CCCHHHH---HHHHHHHhChhHHhhchHh-----hcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHH
Confidence 876543 1222222 2344566788877777665 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHHHHHh
Q 010509 224 QQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFAS 281 (508)
Q Consensus 224 ~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~ 281 (508)
..+.+.|.+..+ ++|+|++||+++ .+..++|++++|++|++++.|+.+++.++++.
T Consensus 141 ~~~~~~l~~~~~-~~~ii~vsH~~~-~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 196 (213)
T PRK15177 141 LRMQAALACQLQ-QKGLIVLTHNPR-LIKEHCHAFGVLLHGKITMCEDLAQATALFEQ 196 (213)
T ss_pred HHHHHHHHHHhh-CCcEEEEECCHH-HHHHhcCeeEEEECCeEEEeCCHHHHHHHHHH
Confidence 999998865443 468999999987 57788999999999999999999999888764
No 310
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.6e-39 Score=354.88 Aligned_cols=210 Identities=26% Similarity=0.354 Sum_probs=176.4
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+++|+++||+++++. ++.+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.+++.
T Consensus 4 ~~~l~i~~l~~~y~~------------~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~~-- 69 (556)
T PRK11819 4 QYIYTMNRVSKVVPP------------KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAPG-- 69 (556)
T ss_pred cEEEEEeeEEEEeCC------------CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC--
Confidence 347999999998741 357999999999999999999999999999999999999999999999752
Q ss_pred ChhccccEEEEecCCCCCCCCCHHHHHHHHHH-hc------------CCCCCCH--------------------HHHHHH
Q 010509 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTAL-LQ------------LPNSFTE--------------------KEKIKC 162 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~-l~------------~~~~~~~--------------------~~~~~~ 162 (508)
..+|||+|++.+++.+||.||+.++.. .+ ....... .+..++
T Consensus 70 -----~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (556)
T PRK11819 70 -----IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQ 144 (556)
T ss_pred -----CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHH
Confidence 459999999999999999999987531 00 0000000 012456
Q ss_pred HHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEE
Q 010509 163 AEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVM 242 (508)
Q Consensus 163 v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~ 242 (508)
++++++.+||.. .++.++ +|||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. .|||+
T Consensus 145 ~~~~l~~~gl~~-~~~~~~-----~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---~tvii 215 (556)
T PRK11819 145 LEIAMDALRCPP-WDAKVT-----KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---GTVVA 215 (556)
T ss_pred HHHHHHhCCCCc-ccCchh-----hcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC---CeEEE
Confidence 788999999964 566654 899999999999999999999999999999999999999999999873 59999
Q ss_pred EecCcchHHHhhccEEEEEeCCeEE-EEcChhh
Q 010509 243 TIHQPSNMLYYMFHKVLLLSEGYPL-YSGEASG 274 (508)
Q Consensus 243 s~H~~~~~~~~~~D~v~lL~~G~iv-~~G~~~~ 274 (508)
+||+++ .+...+|++++|++|+++ +.|+.++
T Consensus 216 isHd~~-~~~~~~d~i~~l~~g~i~~~~g~~~~ 247 (556)
T PRK11819 216 VTHDRY-FLDNVAGWILELDRGRGIPWEGNYSS 247 (556)
T ss_pred EeCCHH-HHHhhcCeEEEEeCCEEEEecCCHHH
Confidence 999986 577899999999999986 8888765
No 311
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=3.5e-40 Score=392.52 Aligned_cols=216 Identities=22% Similarity=0.391 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC--------------
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-------------- 103 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-------------- 103 (508)
.++++||+|+|+.+ .++++|+|+||+++||+.+||+||||||||||+++|.|++.|
T Consensus 1165 ~I~f~nVsF~Y~~~----------~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~ 1234 (1466)
T PTZ00265 1165 KIEIMDVNFRYISR----------PNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTN 1234 (1466)
T ss_pred eEEEEEEEEECCCC----------CCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccc
Confidence 59999999998621 135799999999999999999999999999999999999987
Q ss_pred ----------------------------------------cccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHH
Q 010509 104 ----------------------------------------INGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYLTVT 139 (508)
Q Consensus 104 ----------------------------------------~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~ 139 (508)
++|+|++||+++.+ .+|+.+|||+|++.+|+ .|++
T Consensus 1235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gTIr 1313 (1466)
T PTZ00265 1235 DMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MSIY 1313 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-ccHH
Confidence 69999999999853 57889999999999996 5999
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 010509 140 ETMVFTALLQLPNSFTEKEKIKCAEAVMTELG-------LSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLD 212 (508)
Q Consensus 140 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLD 212 (508)
|||.++. + ..++++ ++++++..+ |.+-.||.+| +....||||||||++|||||+++|+||+||
T Consensus 1314 eNI~~g~----~-~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VG-e~G~~LSGGQkQRIaIARALlr~p~ILLLD 1383 (1466)
T PTZ00265 1314 ENIKFGK----E-DATRED----VKRACKFAAIDEFIESLPNKYDTNVG-PYGKSLSGGQKQRIAIARALLREPKILLLD 1383 (1466)
T ss_pred HHHhcCC----C-CCCHHH----HHHHHHHcCCHHHHHhCccccCCccC-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 9999863 1 234433 444444444 4556789998 456789999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEecCcchHHHhhccEEEEEeC----CeEE-EEcChhhHH
Q 010509 213 EPTSGLDSTIAQQILSILLKLA-NGGRTIVMTIHQPSNMLYYMFHKVLLLSE----GYPL-YSGEASGAM 276 (508)
Q Consensus 213 EPtsgLD~~~~~~i~~~L~~l~-~~g~tii~s~H~~~~~~~~~~D~v~lL~~----G~iv-~~G~~~~~~ 276 (508)
||||+||+.+...|.+.|+++. .+++|+|+++|+++. + +.||+|++|++ |+++ ..|+.+++.
T Consensus 1384 EaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlst-i-~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1384 EATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIAS-I-KRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred CcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHH-H-HhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 9999999999999999999986 368999999999863 4 66999999999 9955 899988875
No 312
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=1e-39 Score=353.10 Aligned_cols=215 Identities=21% Similarity=0.354 Sum_probs=175.3
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-cccEEEECCEeC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-INGRITYNGKPF 115 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-~~G~I~~~G~~~ 115 (508)
..++++|+++.++ ++.+|+|+||++++||+++|+||||||||||+|+|+|+.++ ++|+|.++|+++
T Consensus 259 ~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~ 325 (490)
T PRK10938 259 PRIVLNNGVVSYN-------------DRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRR 325 (490)
T ss_pred ceEEEeceEEEEC-------------CeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccC
Confidence 4699999999875 35699999999999999999999999999999999998765 699999999875
Q ss_pred Ch-----hccccEEEEecCCCCCCC--CCHHHHHHHHHHh--cCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCC
Q 010509 116 SN-----QMTRNTGFVTQEDVLSPY--LTVTETMVFTALL--QLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLT 185 (508)
Q Consensus 116 ~~-----~~~~~i~yv~Q~~~l~~~--lTv~E~l~~~~~l--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~ 185 (508)
.. ..++.++|++|++.+++. .|+++++.+.... ....... .+.+++++++++.+||.+ ..++.++
T Consensus 326 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~---- 400 (490)
T PRK10938 326 GSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFH---- 400 (490)
T ss_pred CCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCchh----
Confidence 32 235679999998765433 4677766543211 1111112 233457889999999987 7777664
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCC-CEEEEEecCcchHHHh-hccEEEEEeC
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGG-RTIVMTIHQPSNMLYY-MFHKVLLLSE 263 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tii~s~H~~~~~~~~-~~D~v~lL~~ 263 (508)
+|||||||||+||++|+.+|++|+|||||+|||+.++..+.+.|++++++| .|||++|||++. +.+ ++|++++|++
T Consensus 401 -~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~-~~~~~~d~v~~l~~ 478 (490)
T PRK10938 401 -SLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAED-APACITHRLEFVPD 478 (490)
T ss_pred -hCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhh-hhhhhheeEEEecC
Confidence 899999999999999999999999999999999999999999999998765 579999999864 555 6899999999
Q ss_pred CeEEEEcC
Q 010509 264 GYPLYSGE 271 (508)
Q Consensus 264 G~iv~~G~ 271 (508)
|+++..-.
T Consensus 479 G~i~~~~~ 486 (490)
T PRK10938 479 GDIYRYVQ 486 (490)
T ss_pred CceEEeec
Confidence 99887643
No 313
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=4.6e-39 Score=323.98 Aligned_cols=204 Identities=28% Similarity=0.426 Sum_probs=165.7
Q ss_pred CceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe
Q 010509 35 HPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP 114 (508)
Q Consensus 35 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~ 114 (508)
....|+++|+++. .+.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 36 ~~~~l~i~nls~~---------------~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-- 98 (282)
T cd03291 36 DDNNLFFSNLCLV---------------GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-- 98 (282)
T ss_pred CCCeEEEEEEEEe---------------cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC--
Confidence 3456999999884 14599999999999999999999999999999999999999999999988
Q ss_pred CChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCCCCCc
Q 010509 115 FSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK-------NSLIGGPLTRG 187 (508)
Q Consensus 115 ~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~ 187 (508)
.++|++|++.+++. ||+||+.+.... .. .++.+.++.+++.+.. ++.++ ..++.
T Consensus 99 -------~i~yv~q~~~l~~~-tv~enl~~~~~~------~~----~~~~~~l~~~~l~~~l~~~~~~~~~~~~-~~~~~ 159 (282)
T cd03291 99 -------RISFSSQFSWIMPG-TIKENIIFGVSY------DE----YRYKSVVKACQLEEDITKFPEKDNTVLG-EGGIT 159 (282)
T ss_pred -------EEEEEeCccccccc-CHHHHhhccccc------CH----HHHHHHHHHhCCHHHHHhccccccceec-CCCCc
Confidence 38999999988875 999999864211 11 1122334444443322 22222 23468
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSIL-LKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L-~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
||||||||++||++|+.+|++++|||||+|||+.++..+.+.+ ++++ ++.|||++||++.. + ..+|++++|++|++
T Consensus 160 LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~-~~~tIiiisH~~~~-~-~~~d~i~~l~~G~i 236 (282)
T cd03291 160 LSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM-ANKTRILVTSKMEH-L-KKADKILILHEGSS 236 (282)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCChHH-H-HhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999865 5554 47999999999874 4 57999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
++.|+++++..
T Consensus 237 ~~~g~~~~~~~ 247 (282)
T cd03291 237 YFYGTFSELQS 247 (282)
T ss_pred EEECCHHHHHh
Confidence 99999887643
No 314
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=3.1e-39 Score=300.90 Aligned_cols=163 Identities=31% Similarity=0.526 Sum_probs=144.4
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~ 118 (508)
++++|+++.++. ++.+|+|+|+++++||+++|+||||||||||+++|+|+++|++|+|.++|.
T Consensus 1 i~~~~~~~~~~~------------~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~----- 63 (166)
T cd03223 1 IELENLSLATPD------------GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG----- 63 (166)
T ss_pred CEEEEEEEEcCC------------CCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----
Confidence 467899887641 246999999999999999999999999999999999999999999999874
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHH
Q 010509 119 MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSI 198 (508)
Q Consensus 119 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 198 (508)
+.++|++|++.++ ..|++||+.+. .+++||||||||++|
T Consensus 64 --~~i~~~~q~~~~~-~~tv~~nl~~~--------------------------------------~~~~LS~G~~~rv~l 102 (166)
T cd03223 64 --EDLLFLPQRPYLP-LGTLREQLIYP--------------------------------------WDDVLSGGEQQRLAF 102 (166)
T ss_pred --ceEEEECCCCccc-cccHHHHhhcc--------------------------------------CCCCCCHHHHHHHHH
Confidence 5699999998765 57999998642 124899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 199 GQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 199 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
||+|+.+|++++|||||+|||+.++..+.+.|+++ ++|+|++||+++ . ...+|++++|++|
T Consensus 103 aral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~---~~tiiivsh~~~-~-~~~~d~i~~l~~~ 163 (166)
T cd03223 103 ARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL---GITVISVGHRPS-L-WKFHDRVLDLDGE 163 (166)
T ss_pred HHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---CCEEEEEeCChh-H-HhhCCEEEEEcCC
Confidence 99999999999999999999999999999999987 589999999985 3 4689999999865
No 315
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-39 Score=353.13 Aligned_cols=203 Identities=23% Similarity=0.387 Sum_probs=174.8
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++++++ ++.+|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+
T Consensus 318 ~~l~~~~l~~~~~-------------~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--- 381 (530)
T PRK15064 318 NALEVENLTKGFD-------------NGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN--- 381 (530)
T ss_pred ceEEEEeeEEeeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc---
Confidence 3699999999875 356999999999999999999999999999999999999999999999873
Q ss_pred hhccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCHHHH
Q 010509 117 NQMTRNTGFVTQEDV--LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 117 ~~~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGer 193 (508)
+.+||++|++. +++.+|+.|++.+.. .. . ..+++++++++.+|+. +..++.++ +||||||
T Consensus 382 ----~~i~~~~q~~~~~~~~~~t~~~~~~~~~---~~-~----~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq~ 444 (530)
T PRK15064 382 ----ANIGYYAQDHAYDFENDLTLFDWMSQWR---QE-G----DDEQAVRGTLGRLLFSQDDIKKSVK-----VLSGGEK 444 (530)
T ss_pred ----eEEEEEcccccccCCCCCcHHHHHHHhc---cC-C----ccHHHHHHHHHHcCCChhHhcCccc-----ccCHHHH
Confidence 46999999864 566799999986421 11 1 1235678899999994 56676664 9999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE-EEcCh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL-YSGEA 272 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv-~~G~~ 272 (508)
||++||++|+.+|++|+|||||+|||+.++..+.+.|+++ +.|||++|||+. .+..+||++++|++|+++ +.|++
T Consensus 445 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vsHd~~-~~~~~~d~i~~l~~g~i~~~~g~~ 520 (530)
T PRK15064 445 GRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY---EGTLIFVSHDRE-FVSSLATRIIEITPDGVVDFSGTY 520 (530)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC---CCEEEEEeCCHH-HHHHhCCEEEEEECCeEEEcCCCH
Confidence 9999999999999999999999999999999999999987 359999999986 577889999999999998 88887
Q ss_pred hhHH
Q 010509 273 SGAM 276 (508)
Q Consensus 273 ~~~~ 276 (508)
++..
T Consensus 521 ~~~~ 524 (530)
T PRK15064 521 EEYL 524 (530)
T ss_pred HHHH
Confidence 7553
No 316
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.5e-41 Score=302.51 Aligned_cols=192 Identities=25% Similarity=0.444 Sum_probs=171.0
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----hccccEEEEecCCCCCCCCCH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYLTV 138 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv 138 (508)
+.++|+++||.+++||..+|.||||||||||+|+++.+..|++|++++.|++++. .+|++++|+.|.+.||+. ||
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~-tV 93 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD-TV 93 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCcccccc-ch
Confidence 5789999999999999999999999999999999999999999999999999863 678899999999999997 99
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 010509 139 TETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSG 217 (508)
Q Consensus 139 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsg 217 (508)
++|+.|..++|..+. ..++..+.++.+++.+. .++.+ ..||||||||++|+|.|..-|+||+||||||.
T Consensus 94 eDNlifP~~~r~rr~-----dr~aa~~llar~~l~~~~L~k~i-----t~lSGGE~QriAliR~Lq~~P~ILLLDE~TsA 163 (223)
T COG4619 94 EDNLIFPWQIRNRRP-----DRAAALDLLARFALPDSILTKNI-----TELSGGEKQRIALIRNLQFMPKILLLDEITSA 163 (223)
T ss_pred hhccccchHHhccCC-----ChHHHHHHHHHcCCchhhhcchh-----hhccchHHHHHHHHHHhhcCCceEEecCchhh
Confidence 999999887764221 23456788999999764 34444 48999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHH-cCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 218 LDSTIAQQILSILLKLA-NGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 218 LD~~~~~~i~~~L~~l~-~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
||+.++..|-+++.++. ++++.++-+|||+.. ..+.||+++-+..|++
T Consensus 164 LD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dq-a~rha~k~itl~~G~~ 212 (223)
T COG4619 164 LDESNKRNIEEMIHRYVREQNVAVLWITHDKDQ-AIRHADKVITLQPGHA 212 (223)
T ss_pred cChhhHHHHHHHHHHHhhhhceEEEEEecChHH-HhhhhheEEEeccCcc
Confidence 99999999999999986 578999999999874 4588999999999864
No 317
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=1.4e-39 Score=367.37 Aligned_cols=220 Identities=25% Similarity=0.445 Sum_probs=191.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++|.|+.+ .+.+||+|+|+++++|+-+||+|||||||||.+.+|-..+.|++|.|.+||+++.+
T Consensus 987 ~I~~~~V~F~YPsR----------P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~ 1056 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTR----------PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKD 1056 (1228)
T ss_pred EEEEeeeEeeCCCC----------CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCccccc
Confidence 69999999998743 36789999999999999999999999999999999999999999999999999865
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH-HH--HcCCCcccccccCCCCCCccCH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAV-MT--ELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~-l~--~lgL~~~~~~~vg~~~~~~LSG 190 (508)
.+|+++|.|.|+|.||.. |++||+.++. . ..+.+|..+.++.+ +. ..+|.+-.||.+| +...+|||
T Consensus 1057 lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~----~-~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vG-erG~QLSG 1129 (1228)
T KOG0055|consen 1057 LNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGS----E-EVSEEEIIEAAKLANAHNFISSLPQGYDTRVG-ERGVQLSG 1129 (1228)
T ss_pred CCHHHHHHhcceeccCchhhcc-cHHHHHhccC----C-CCCHHHHHHHHHHhhhHHHHhcCcCcccCccC-cccCcCCc
Confidence 468899999999999975 9999999982 1 24555544433222 11 1378888999999 45568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
|||||++||||+++||+||||||.||+||+++.+.+.+.|.+.. .|+|.|++.|+++. + +.+|.|.|+++|+|++.|
T Consensus 1130 GQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~-~gRT~IvIAHRLST-I-qnaD~I~Vi~~G~VvE~G 1206 (1228)
T KOG0055|consen 1130 GQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM-EGRTTIVIAHRLST-I-QNADVIAVLKNGKVVEQG 1206 (1228)
T ss_pred hHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh-cCCcEEEEecchhh-h-hcCCEEEEEECCEEEecc
Confidence 99999999999999999999999999999999999999999975 58999999999973 4 679999999999999999
Q ss_pred ChhhHHH
Q 010509 271 EASGAMN 277 (508)
Q Consensus 271 ~~~~~~~ 277 (508)
+-+++.+
T Consensus 1207 tH~~L~~ 1213 (1228)
T KOG0055|consen 1207 THDELLA 1213 (1228)
T ss_pred cHHHHHh
Confidence 9888876
No 318
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=1.2e-39 Score=355.82 Aligned_cols=199 Identities=30% Similarity=0.493 Sum_probs=169.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++|+.. ++++|+|+|++++|||.++|+||||||||||+|+|+|+++|++|+|.+||+++.+
T Consensus 320 ~i~~~~v~f~y~~~-----------~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~ 388 (529)
T TIGR02857 320 SLEFSGLSVAYPGR-----------RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLAD 388 (529)
T ss_pred eEEEEEEEEECCCC-----------CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhh
Confidence 69999999998521 2469999999999999999999999999999999999999999999999998753
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~ 186 (508)
.+++.++||+|++.+++ .|++||+.++. + ..++ +.++++++..++.+ -.||.+|. ...
T Consensus 389 ~~~~~lr~~i~~v~Q~~~lf~-~ti~~Ni~~~~----~-~~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-~g~ 457 (529)
T TIGR02857 389 ADADSWRDQIAWVPQHPFLFA-GTIAENIRLAR----P-DASD----AEIRRALERAGLDEFVAALPQGLDTLIGE-GGA 457 (529)
T ss_pred CCHHHHHhheEEEcCCCcccC-cCHHHHHhccC----C-CCCH----HHHHHHHHHcCcHHHHHhCcccccchhcc-ccc
Confidence 56789999999999997 49999998753 1 1232 34556666666653 34777763 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
.||||||||++|||+|+++|++++||||||+||+.+...+.+.|+++. +++|+|+++|+++. + +.||++++|
T Consensus 458 ~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~-~-~~~d~i~~l 529 (529)
T TIGR02857 458 GLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA-QGRTVLLVTHRLAL-A-ERADRIVVL 529 (529)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc-CCCEEEEEecCHHH-H-HhCCEEEeC
Confidence 899999999999999999999999999999999999999999999985 58999999999863 4 679999875
No 319
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=7.8e-40 Score=316.41 Aligned_cols=235 Identities=24% Similarity=0.332 Sum_probs=195.3
Q ss_pred eEEEEeEEEEEeccccc--c------CcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEE
Q 010509 38 TLKFEDIVYKIKMKKGF--Y------GSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRIT 109 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~--~------~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~ 109 (508)
++..+||++.+...-.. . -.+.++....+++|+||+|++|++++++|||||||||+||+|+|++.|++|.|.
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~ 82 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence 46678887765432110 0 001222234589999999999999999999999999999999999999999999
Q ss_pred ECCEeCCh---hccccEEEEe-cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 110 YNGKPFSN---QMTRNTGFVT-QEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 110 ~~G~~~~~---~~~~~i~yv~-Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
++|.+.-+ .+-+.+++|+ |...+...+.+.|.+....... +.+.++-+++.+.+.+.++|++..+..+
T Consensus 83 V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~Iy---~Ipd~~F~~r~~~l~eiLdl~~~lk~~v----- 154 (325)
T COG4586 83 VNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIY---EIPDDEFAERLDFLTEILDLEGFLKWPV----- 154 (325)
T ss_pred ecCcCcchhHHHHHHHHHHHhhhhheeeeechhhhhHHHHHHHH---hCCHHHHHHHHHHHHHHhcchhhhhhhh-----
Confidence 99997632 3445677775 5556766777888877654433 4677888899999999999998887776
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
|.||-|||.|+.||.+|+++|+||||||||=|||..++..+.+.|++..+ .+.||+.+||+.+ .+..+||||++|+.|
T Consensus 155 r~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~-di~~lc~rv~~I~~G 233 (325)
T COG4586 155 RKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFD-DIATLCDRVLLIDQG 233 (325)
T ss_pred hhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchh-hHHHhhhheEEeeCC
Confidence 69999999999999999999999999999999999999999999999975 5999999999997 588999999999999
Q ss_pred eEEEEcChhhHHHHHHh
Q 010509 265 YPLYSGEASGAMNYFAS 281 (508)
Q Consensus 265 ~iv~~G~~~~~~~~f~~ 281 (508)
+++|+|+.++..+-|..
T Consensus 234 qlv~dg~l~~l~~~f~~ 250 (325)
T COG4586 234 QLVFDGTLAQLQEQFGP 250 (325)
T ss_pred cEeecccHHHHHHHhCC
Confidence 99999999998876653
No 320
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=4.5e-39 Score=352.59 Aligned_cols=204 Identities=21% Similarity=0.273 Sum_probs=171.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++. ++++|+|+|+++++||.+||+||||||||||+++|+|+++|++|+|.+||+++.+
T Consensus 322 ~i~~~~v~f~y~~------------~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~ 389 (547)
T PRK10522 322 TLELRNVTFAYQD------------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTA 389 (547)
T ss_pred eEEEEEEEEEeCC------------CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCC
Confidence 6999999999851 2469999999999999999999999999999999999999999999999999863
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
..+++++||+|++.+++. |++|| . .. ..++.+++.++.+++.+..+..-|......||||||
T Consensus 390 ~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~------~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~ 455 (547)
T PRK10522 390 EQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G------KP----ANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQK 455 (547)
T ss_pred CCHHHHhhheEEEecChhHHHH-hhccc---c------Cc----hHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHH
Confidence 467899999999988874 77776 1 11 123456788889998765432111001358999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||++||||++.+|++|+||||||+||+.++..+.+.|.+..+ .|+|+|+++|+++ ..+.+|++++|++|+++..
T Consensus 456 qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~--~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 456 KRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDH--YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechH--HHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999987643 5899999999985 4567999999999999866
No 321
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.4e-39 Score=385.63 Aligned_cols=213 Identities=21% Similarity=0.295 Sum_probs=183.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++|+. +.+++|+|+|++|+|||.+||+||||||||||+++|.|++.|++|+|.+||.++.+
T Consensus 1234 ~I~f~nVsf~Y~~-----------~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~ 1302 (1495)
T PLN03232 1234 SIKFEDVHLRYRP-----------GLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAK 1302 (1495)
T ss_pred cEEEEEEEEEECC-----------CCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhh
Confidence 5999999999851 12569999999999999999999999999999999999999999999999999864
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~ 186 (508)
.+|++++||||++.+|+. |++|||..+. ..+++ .+.++++..++.+ -.|+.+| +...
T Consensus 1303 i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~-e~G~ 1370 (1495)
T PLN03232 1303 FGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHNDA----DLWEALERAHIKDVIDRNPFGLDAEVS-EGGE 1370 (1495)
T ss_pred CCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCHH----HHHHHHHHcCCHHHHHhCcCCCCceec-CCCC
Confidence 578899999999999986 9999997531 22333 3455666666543 4577776 3456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|+|+++|+++. + ..||||++|++|++
T Consensus 1371 ~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~-~~~TvI~IAHRl~t-i-~~~DrIlVL~~G~i 1447 (1495)
T PLN03232 1371 NFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF-KSCTMLVIAHRLNT-I-IDCDKILVLSSGQV 1447 (1495)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEECCEE
Confidence 899999999999999999999999999999999999999999999874 47999999999964 4 44899999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
++.|++++..
T Consensus 1448 vE~Gt~~eLl 1457 (1495)
T PLN03232 1448 LEYDSPQELL 1457 (1495)
T ss_pred EEECCHHHHH
Confidence 9999999875
No 322
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.1e-39 Score=386.66 Aligned_cols=214 Identities=21% Similarity=0.312 Sum_probs=184.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|++++|+. +.+++|+|+|++|+|||.+||+|+||||||||+++|.|++.|++|+|.+||.++.+
T Consensus 1237 ~I~f~nVsf~Y~~-----------~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~ 1305 (1622)
T PLN03130 1237 SIKFEDVVLRYRP-----------ELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISK 1305 (1622)
T ss_pred cEEEEEEEEEeCC-----------CCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEeccc
Confidence 6999999999851 12469999999999999999999999999999999999999999999999999864
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-------ECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~ 186 (508)
.+|+++++||||+.+|+. |++|||..+. ..+++ .+.++++..++. +-.|+.+| +...
T Consensus 1306 i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~------~~tde----ei~~Al~~a~l~~~I~~lp~GLdt~Vg-e~G~ 1373 (1622)
T PLN03130 1306 FGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFN------EHNDA----DLWESLERAHLKDVIRRNSLGLDAEVS-EAGE 1373 (1622)
T ss_pred CCHHHHHhccEEECCCCccccc-cHHHHhCcCC------CCCHH----HHHHHHHHcCcHHHHHhCccccCcccc-CCCC
Confidence 578899999999999986 9999997542 12333 345555555553 34677776 3456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|+|+++|+++. + ..||||++|++|++
T Consensus 1374 nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~-~~~TvI~IAHRL~t-I-~~~DrIlVLd~G~I 1450 (1622)
T PLN03130 1374 NFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF-KSCTMLIIAHRLNT-I-IDCDRILVLDAGRV 1450 (1622)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEeCChHH-H-HhCCEEEEEECCEE
Confidence 899999999999999999999999999999999999999999999975 47999999999974 4 34899999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
++.|+++++.+
T Consensus 1451 vE~Gt~~eLl~ 1461 (1622)
T PLN03130 1451 VEFDTPENLLS 1461 (1622)
T ss_pred EEeCCHHHHHh
Confidence 99999998864
No 323
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-39 Score=300.94 Aligned_cols=220 Identities=23% Similarity=0.394 Sum_probs=194.5
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECC-EeC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG-KPF 115 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G-~~~ 115 (508)
..|+++|++++++ +.++|+|+||++.+||+-+|+|||||||||+|++|+|..+|++|++.++| .++
T Consensus 4 ~iL~~~~vsVsF~-------------GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl 70 (249)
T COG4674 4 IILYLDGVSVSFG-------------GFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDL 70 (249)
T ss_pred ceEEEeceEEEEc-------------ceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhh
Confidence 4689999999986 56799999999999999999999999999999999999999999999999 676
Q ss_pred Ch-----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC-----CCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 116 SN-----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN-----SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 116 ~~-----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
.+ ..+..||--+|.|..|+.+||+|||..+.....+- .....+.+++++++|+..||.+.+|...+
T Consensus 71 ~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~---- 146 (249)
T COG4674 71 TKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAA---- 146 (249)
T ss_pred ccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhh----
Confidence 53 23567999999999999999999999875422110 01223445789999999999999998876
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.||-||||++.|++-++.+|++|+||||++|+-.....+.-++|++++. +++|+++.||+. .+.+++|+|.+|++|.
T Consensus 147 -~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~-~hsilVVEHDM~-Fvr~~A~~VTVlh~G~ 223 (249)
T COG4674 147 -LLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG-KHSILVVEHDMG-FVREIADKVTVLHEGS 223 (249)
T ss_pred -hhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc-CceEEEEeccHH-HHHHhhheeEEEeccc
Confidence 8999999999999999999999999999999999999999999999986 589999999996 7889999999999999
Q ss_pred EEEEcChhhHH
Q 010509 266 PLYSGEASGAM 276 (508)
Q Consensus 266 iv~~G~~~~~~ 276 (508)
+...|+.+++.
T Consensus 224 VL~EGsld~v~ 234 (249)
T COG4674 224 VLAEGSLDEVQ 234 (249)
T ss_pred eeecccHHHhh
Confidence 99999988764
No 324
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=9.8e-39 Score=315.82 Aligned_cols=188 Identities=21% Similarity=0.279 Sum_probs=157.9
Q ss_pred eeeceEEEEe-----CCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHH
Q 010509 66 ILKGITGMVK-----PGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTE 140 (508)
Q Consensus 66 iL~~vs~~v~-----~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 140 (508)
.++|++++++ +||+++|+||||||||||+++|+|+++|++|+|.++|+ .++|++|+....+.+||+|
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~--------~i~~~~q~~~~~~~~tv~e 80 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD--------TVSYKPQYIKADYEGTVRD 80 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc--------eEEEecccccCCCCCCHHH
Confidence 5666666665 79999999999999999999999999999999999985 4899999988777899999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010509 141 TMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220 (508)
Q Consensus 141 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~ 220 (508)
++.+...... . .....+++++.+||.+..++.++ .|||||||||+||++|+.+|++++|||||++||+
T Consensus 81 ~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~ 148 (246)
T cd03237 81 LLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREVP-----ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDV 148 (246)
T ss_pred HHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCChh-----hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 9976432110 1 12345788999999887777664 8999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEE--EEcChhh
Q 010509 221 TIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL--YSGEASG 274 (508)
Q Consensus 221 ~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv--~~G~~~~ 274 (508)
.++..+.+.|+++++ .|+|||++||++. .+..++|++++|+++..+ ..+++.+
T Consensus 149 ~~~~~l~~~l~~~~~~~~~tiiivsHd~~-~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 149 EQRLMASKVIRRFAENNEKTAFVVEHDII-MIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 999999999999976 4899999999986 577899999999765433 3445544
No 325
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.5e-39 Score=333.83 Aligned_cols=224 Identities=27% Similarity=0.416 Sum_probs=192.2
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
.-.|.++++++--+ ..++++|+|+||.+.+||.++|+||||||||||.|+|.|..+|.+|.|.+||-++
T Consensus 332 ~g~L~Ve~l~~~PP-----------g~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l 400 (580)
T COG4618 332 QGALSVERLTAAPP-----------GQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADL 400 (580)
T ss_pred CceeeEeeeeecCC-----------CCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhh
Confidence 34799999998322 1257899999999999999999999999999999999999999999999999987
Q ss_pred Ch----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHH-----HHHHHHHHHHHcCCCcccccccCCCCCC
Q 010509 116 SN----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKE-----KIKCAEAVMTELGLSECKNSLIGGPLTR 186 (508)
Q Consensus 116 ~~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~-----~~~~v~~~l~~lgL~~~~~~~vg~~~~~ 186 (508)
.. .+.++|||+||+-.||+. ||.||+.=. .++.+.+. +.+.+.|++ +.+.+-.||.+|+ -..
T Consensus 401 ~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf-----~~~~d~~kIieAA~lAgvHelI--l~lP~GYdT~iG~-~G~ 471 (580)
T COG4618 401 RQWDREQLGRHIGYLPQDVELFDG-TIAENIARF-----GEEADPEKVIEAARLAGVHELI--LRLPQGYDTRIGE-GGA 471 (580)
T ss_pred hcCCHHHhccccCcCcccceecCC-cHHHHHHhc-----cccCCHHHHHHHHHHcChHHHH--HhCcCCccCccCC-CCC
Confidence 53 567899999999999997 999999522 22222222 122233443 4677888999994 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||+++||||-.+|.+++||||-|+||......+.+.|.+++++|.|+|+++|.|+ +...+|+|++|++|++
T Consensus 472 ~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs--~L~~~Dkilvl~~G~~ 549 (580)
T COG4618 472 TLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPS--ALASVDKILVLQDGRI 549 (580)
T ss_pred CCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHH--HHhhcceeeeecCChH
Confidence 89999999999999999999999999999999999999999999999999999999999996 5678999999999999
Q ss_pred EEEcChhhHHHHHHh
Q 010509 267 LYSGEASGAMNYFAS 281 (508)
Q Consensus 267 v~~G~~~~~~~~f~~ 281 (508)
-.+|+.++++.....
T Consensus 550 ~~FG~r~eVLa~~~~ 564 (580)
T COG4618 550 AAFGPREEVLAKVLR 564 (580)
T ss_pred HhcCCHHHHHHHhcC
Confidence 999999999998764
No 326
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=8.1e-39 Score=350.84 Aligned_cols=209 Identities=27% Similarity=0.354 Sum_probs=173.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++||+++++. ++++|+|+||++++||+++|+|||||||||||++|+|+.+|++|+|.+++
T Consensus 4 ~i~~~nls~~~~~------------~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~----- 66 (552)
T TIGR03719 4 IYTMNRVSKVVPP------------KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP----- 66 (552)
T ss_pred EEEEeeEEEecCC------------CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----
Confidence 6899999998741 35699999999999999999999999999999999999999999999975
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHh-c------------CCCCCCHH--------------------HHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALL-Q------------LPNSFTEK--------------------EKIKCAE 164 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l-~------------~~~~~~~~--------------------~~~~~v~ 164 (508)
+..+|||+|++.+++.+||+||+.++... + ......+. +..++++
T Consensus 67 --~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (552)
T TIGR03719 67 --GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLE 144 (552)
T ss_pred --CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHH
Confidence 24699999999999999999999875321 0 00000000 0124567
Q ss_pred HHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEe
Q 010509 165 AVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTI 244 (508)
Q Consensus 165 ~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~ 244 (508)
++++.+|+.. .++.+ ..|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||++|
T Consensus 145 ~~l~~~~l~~-~~~~~-----~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~---~~tvIiis 215 (552)
T TIGR03719 145 IAMDALRCPP-WDADV-----TKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY---PGTVVAVT 215 (552)
T ss_pred HHHhhCCCCc-ccCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC---CCeEEEEe
Confidence 7888888854 45555 489999999999999999999999999999999999999999999886 35999999
Q ss_pred cCcchHHHhhccEEEEEeCCeEE-EEcChhhH
Q 010509 245 HQPSNMLYYMFHKVLLLSEGYPL-YSGEASGA 275 (508)
Q Consensus 245 H~~~~~~~~~~D~v~lL~~G~iv-~~G~~~~~ 275 (508)
|++. .+...||++++|++|+++ +.|+.++.
T Consensus 216 Hd~~-~~~~~~d~v~~l~~g~i~~~~g~~~~~ 246 (552)
T TIGR03719 216 HDRY-FLDNVAGWILELDRGRGIPWEGNYSSW 246 (552)
T ss_pred CCHH-HHHhhcCeEEEEECCEEEEecCCHHHH
Confidence 9986 577899999999999976 78887754
No 327
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=5.7e-39 Score=313.53 Aligned_cols=195 Identities=28% Similarity=0.482 Sum_probs=169.7
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++||++.+..... ++ + .....+++||||++++||.++|+|+||||||||-|+|.|+.+|++|+|.++|+++.
T Consensus 3 ~ll~v~~l~k~f~~~~~-~~--~-~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~ 78 (268)
T COG4608 3 PLLEVKNLKKYFPVGKG-FG--K-KRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDIT 78 (268)
T ss_pred ceEEEeccEEEEecccc-cC--c-ccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchh
Confidence 36899999999875432 11 1 11257999999999999999999999999999999999999999999999999864
Q ss_pred hhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCHHHHHH
Q 010509 117 NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 117 ~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqR 195 (508)
... ++++.+++.++|+.+||.+ .++ .+++++|||||||
T Consensus 79 ~~~------------------------------------~~~~~~~v~elL~~Vgl~~~~~~-----ryPhelSGGQrQR 117 (268)
T COG4608 79 KLS------------------------------------KEERRERVLELLEKVGLPEEFLY-----RYPHELSGGQRQR 117 (268)
T ss_pred hcc------------------------------------hhHHHHHHHHHHHHhCCCHHHhh-----cCCcccCchhhhh
Confidence 311 3456678999999999864 333 4568999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
+.|||||+.+|+++++|||+|.||...+.+++++|+++.++ |.|.++++||.+ .+.+++||+.+|..|++|..|+.++
T Consensus 118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~-vv~~isdri~VMy~G~iVE~g~~~~ 196 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLS-VVRYISDRIAVMYLGKIVEIGPTEE 196 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHH-hhhhhcccEEEEecCceeEecCHHH
Confidence 99999999999999999999999999999999999999865 999999999986 6889999999999999999999998
Q ss_pred HHH
Q 010509 275 AMN 277 (508)
Q Consensus 275 ~~~ 277 (508)
+..
T Consensus 197 ~~~ 199 (268)
T COG4608 197 VFS 199 (268)
T ss_pred Hhh
Confidence 754
No 328
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=9.7e-39 Score=322.25 Aligned_cols=225 Identities=26% Similarity=0.422 Sum_probs=197.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-----CcccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-----RINGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-----~~~G~I~~~G 112 (508)
.|+++||++.+.... +...++++|||++++||.+||+|+||||||-..+.+.|+++ .-+|+|.|+|
T Consensus 6 lL~v~nLsV~f~~~~---------~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G 76 (534)
T COG4172 6 LLSIRNLSVAFHQEG---------GTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDG 76 (534)
T ss_pred ceeeeccEEEEecCC---------cceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcC
Confidence 589999999887432 35789999999999999999999999999999999999983 2479999999
Q ss_pred EeCCh----hc---c-ccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC
Q 010509 113 KPFSN----QM---T-RNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGG 182 (508)
Q Consensus 113 ~~~~~----~~---~-~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 182 (508)
+++-. .. | .+|+++||++ .|.|-.|+.+.+.-..++. .+.++++.++++.++|+.+|+.+...++ +
T Consensus 77 ~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~H--rg~~~~~Ar~r~lelL~~VgI~~p~~rl--~ 152 (534)
T COG4172 77 EDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLH--RGLSRAAARARALELLELVGIPEPEKRL--D 152 (534)
T ss_pred hhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHH--hcccHHHHHHHHHHHHHHcCCCchhhhh--h
Confidence 98721 22 2 3799999998 4888889998887765543 4667888999999999999998766544 4
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEE
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
.+|++|||||||||.||+||+++|++|+.||||+.||...+.+|+++|++|.++ |..++++|||++ .+.+++|||++|
T Consensus 153 ~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~-iVr~~ADrV~VM 231 (534)
T COG4172 153 AYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLG-IVRKFADRVYVM 231 (534)
T ss_pred hCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHH-HHHHhhhhEEEE
Confidence 788999999999999999999999999999999999999999999999999764 999999999997 688999999999
Q ss_pred eCCeEEEEcChhhHH
Q 010509 262 SEGYPLYSGEASGAM 276 (508)
Q Consensus 262 ~~G~iv~~G~~~~~~ 276 (508)
.+|++++.|+.++++
T Consensus 232 ~~G~ivE~~~t~~lF 246 (534)
T COG4172 232 QHGEIVETGTTETLF 246 (534)
T ss_pred eccEEeecCcHHHHh
Confidence 999999999987764
No 329
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-39 Score=332.11 Aligned_cols=232 Identities=28% Similarity=0.437 Sum_probs=193.7
Q ss_pred hhhcccccCCCceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc
Q 010509 25 EASDVFTRAKHPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI 104 (508)
Q Consensus 25 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~ 104 (508)
+.+.+.+...+.-.++++|+++.|+ .+|++|+||||++.||+.+|++||||+||||++|+|.......
T Consensus 524 d~P~a~pl~~~~G~i~fsnvtF~Y~------------p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~ 591 (790)
T KOG0056|consen 524 DLPGAPPLKVTQGKIEFSNVTFAYD------------PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVN 591 (790)
T ss_pred cCCCCCCccccCCeEEEEEeEEecC------------CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhcc
Confidence 3344444444445799999999987 2588999999999999999999999999999999999999999
Q ss_pred ccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHH--HHH-HHcCCCcccc
Q 010509 105 NGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAE--AVM-TELGLSECKN 177 (508)
Q Consensus 105 ~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~--~~l-~~lgL~~~~~ 177 (508)
+|.|.++|+++.. ..|+.||.||||..+|++ |+..|+.++- | +.+.++..+.++ .+- +.++..+..+
T Consensus 592 sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak----~-~AsneevyaAAkAA~IHdrIl~fPegY~ 665 (790)
T KOG0056|consen 592 SGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAK----P-SASNEEVYAAAKAAQIHDRILQFPEGYN 665 (790)
T ss_pred CceEEEcCchHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecC----C-CCChHHHHHHHHHhhHHHHHhcCchhhh
Confidence 9999999999864 578899999999999976 9999998862 2 224444333322 222 2367888899
Q ss_pred cccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccE
Q 010509 178 SLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 178 ~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~ 257 (508)
|++|. ..-.|||||||||+|||+++.+|.+++|||.||+||..+..+|...|.+++. ++|-|++.|.++. + -.+|.
T Consensus 666 t~VGE-RGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca-~RTtIVvAHRLST-i-vnAD~ 741 (790)
T KOG0056|consen 666 TRVGE-RGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA-NRTTIVVAHRLST-I-VNADL 741 (790)
T ss_pred hhhhh-cccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc-CCceEEEeeeehh-e-ecccE
Confidence 99994 3446899999999999999999999999999999999999999999999986 6788889999985 3 35899
Q ss_pred EEEEeCCeEEEEcChhhHHHH
Q 010509 258 VLLLSEGYPLYSGEASGAMNY 278 (508)
Q Consensus 258 v~lL~~G~iv~~G~~~~~~~~ 278 (508)
|+++++|+|++.|.-++.+..
T Consensus 742 ILvi~~G~IvErG~HeeLl~r 762 (790)
T KOG0056|consen 742 ILVISNGRIVERGRHEELLKR 762 (790)
T ss_pred EEEEeCCeEeecCcHHHHHhc
Confidence 999999999999998887653
No 330
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=1.7e-38 Score=348.53 Aligned_cols=210 Identities=20% Similarity=0.286 Sum_probs=173.1
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++++|+... ..++.+|+|+|+++++||.++|+||||||||||+++|+|.++|++|+|.++|.++.
T Consensus 336 ~~i~~~~v~f~y~~~~--------~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~ 407 (555)
T TIGR01194 336 DSIELKDVHMNPKAPE--------GSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVS 407 (555)
T ss_pred ceEEEEEEEEEeCCCC--------CCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC
Confidence 3699999999986210 01246999999999999999999999999999999999999999999999999986
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC-CCCCccCHH
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGG-PLTRGVSGG 191 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~-~~~~~LSGG 191 (508)
+ ..++.++||+|++.+++. |+++|.. + . ..+++++++++.+++.+..+...+. .....||||
T Consensus 408 ~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~~-------~-~----~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgG 474 (555)
T TIGR01194 408 ADSRDDYRDLFSAIFADFHLFDD-LIGPDEG-------E-H----ASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTG 474 (555)
T ss_pred CCCHHHHHhhCcEEccChhhhhh-hhhcccc-------c-c----hhHHHHHHHHHHcCCchhhcccccccCCcccCCHH
Confidence 4 467889999999998875 7888731 1 1 1234577889999998765443221 113579999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-HHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL-KLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~-~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||++|||+++.+|++++|||||++||+.+...+.+.+. .+..+|+|+|+++|+++ ..+.+|++++|++|+++..
T Consensus 475 q~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~--~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 475 QQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQ--YFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHH--HHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999998664 46567899999999986 3468999999999999754
No 331
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.2e-38 Score=346.30 Aligned_cols=205 Identities=21% Similarity=0.352 Sum_probs=172.4
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|+++.++ ++.+|+|+|++|++||+++|+||||||||||+++|+|+++|++|+|.+++.
T Consensus 323 ~~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~--- 386 (556)
T PRK11819 323 KVIEAENLSKSFG-------------DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET--- 386 (556)
T ss_pred eEEEEEeEEEEEC-------------CeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc---
Confidence 4699999999875 357999999999999999999999999999999999999999999999542
Q ss_pred hhccccEEEEecCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCHHHHH
Q 010509 117 NQMTRNTGFVTQED-VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 117 ~~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerq 194 (508)
..+||++|+. .+++.+||.|++.+...... .... ...++++++.+|+.+ ..++.++ +|||||||
T Consensus 387 ----~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgG~~q 452 (556)
T PRK11819 387 ----VKLAYVDQSRDALDPNKTVWEEISGGLDIIK---VGNR--EIPSRAYVGRFNFKGGDQQKKVG-----VLSGGERN 452 (556)
T ss_pred ----eEEEEEeCchhhcCCCCCHHHHHHhhccccc---cccc--HHHHHHHHHhCCCChhHhcCchh-----hCCHHHHH
Confidence 1599999996 78889999999987643211 1111 123457899999964 4566664 89999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC-CeEE-EEcCh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE-GYPL-YSGEA 272 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~-G~iv-~~G~~ 272 (508)
||+||++|+.+|++|+|||||+|||+.++..+.+.|+++. | |||++|||+. .+..+||++++|++ |++. +.|+.
T Consensus 453 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-tvi~vtHd~~-~~~~~~d~i~~l~~~g~~~~~~g~~ 528 (556)
T PRK11819 453 RLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--G-CAVVISHDRW-FLDRIATHILAFEGDSQVEWFEGNF 528 (556)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--C-eEEEEECCHH-HHHHhCCEEEEEECCCeEEEecCCH
Confidence 9999999999999999999999999999999999999873 4 8999999986 57789999999985 7876 57766
Q ss_pred hhH
Q 010509 273 SGA 275 (508)
Q Consensus 273 ~~~ 275 (508)
++.
T Consensus 529 ~~~ 531 (556)
T PRK11819 529 QEY 531 (556)
T ss_pred HHH
Confidence 543
No 332
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=1.9e-38 Score=380.65 Aligned_cols=214 Identities=18% Similarity=0.260 Sum_probs=184.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++|+.. .+.+|+|+|++|+|||.+||+|+||||||||+++|.|++.|++|+|.+||.++.+
T Consensus 1284 ~I~f~nVsf~Y~~~-----------~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~ 1352 (1522)
T TIGR00957 1284 RVEFRNYCLRYRED-----------LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAK 1352 (1522)
T ss_pred cEEEEEEEEEeCCC-----------CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccc
Confidence 69999999998621 2469999999999999999999999999999999999999999999999999864
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-------ECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~ 186 (508)
.+|++++|||||+.+|+. |++|||.... ..+++ .+.++++..++. +-.|+.+|. ...
T Consensus 1353 i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e-~G~ 1420 (1522)
T TIGR00957 1353 IGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSDE----EVWWALELAHLKTFVSALPDKLDHECAE-GGE 1420 (1522)
T ss_pred cCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCHH----HHHHHHHHcCcHHHHhhCccCCCceecC-CCC
Confidence 578899999999999986 9999996321 22333 345666666664 345777763 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. +++|+|+++|+++. + ..+|||++|++|++
T Consensus 1421 ~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~-~~~TvI~IAHRl~t-i-~~~DrIlVld~G~I 1497 (1522)
T TIGR00957 1421 NLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF-EDCTVLTIAHRLNT-I-MDYTRVIVLDKGEV 1497 (1522)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECCEE
Confidence 799999999999999999999999999999999999999999999864 47999999999974 4 45899999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
++.|++++..+
T Consensus 1498 vE~G~~~eLl~ 1508 (1522)
T TIGR00957 1498 AEFGAPSNLLQ 1508 (1522)
T ss_pred EEECCHHHHHh
Confidence 99999998864
No 333
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=1.9e-38 Score=380.22 Aligned_cols=214 Identities=21% Similarity=0.328 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|++++|+. +...+|+||||+|+|||.+||+|+||||||||+++|.|++.|++|+|.+||+++.+
T Consensus 1308 ~I~f~nVsf~Y~~-----------~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~ 1376 (1560)
T PTZ00243 1308 SLVFEGVQMRYRE-----------GLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGA 1376 (1560)
T ss_pred eEEEEEEEEEeCC-----------CCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccc
Confidence 5999999999862 12459999999999999999999999999999999999999999999999999864
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~ 186 (508)
.+|+.++||||++.+|+. |++|||... ...++ +.+.++++..|+.+ -.|+.+|. ...
T Consensus 1377 i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~------~~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge-~G~ 1444 (1560)
T PTZ00243 1377 YGLRELRRQFSMIPQDPVLFDG-TVRQNVDPF------LEASS----AEVWAALELVGLRERVASESEGIDSRVLE-GGS 1444 (1560)
T ss_pred CCHHHHHhcceEECCCCccccc-cHHHHhCcc------cCCCH----HHHHHHHHHCCChHHHhhCcccccccccC-CcC
Confidence 578899999999999986 999999632 12233 34667777777754 35777773 456
Q ss_pred ccCHHHHHHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILIN-PSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~-P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.||||||||++|||||+++ |+||+||||||+||+.+...|.+.|++.. +++|+|+++|+++. + ..||+|++|++|+
T Consensus 1445 nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~-~~~TvI~IAHRl~t-i-~~~DrIlVLd~G~ 1521 (1560)
T PTZ00243 1445 NYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF-SAYTVITIAHRLHT-V-AQYDKIIVMDHGA 1521 (1560)
T ss_pred cCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC-CCCEEEEEeccHHH-H-HhCCEEEEEECCE
Confidence 8999999999999999996 89999999999999999999999999864 47999999999863 4 5689999999999
Q ss_pred EEEEcChhhHHH
Q 010509 266 PLYSGEASGAMN 277 (508)
Q Consensus 266 iv~~G~~~~~~~ 277 (508)
+++.|+++++.+
T Consensus 1522 VvE~Gt~~eLl~ 1533 (1560)
T PTZ00243 1522 VAEMGSPRELVM 1533 (1560)
T ss_pred EEEECCHHHHHh
Confidence 999999998863
No 334
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=5.1e-38 Score=345.38 Aligned_cols=200 Identities=23% Similarity=0.320 Sum_probs=173.4
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+..++++|+++.++ + ..|+++|+++++||+++|+||||||||||+|+|+|+++|++|+|.++
T Consensus 338 ~~~l~~~~ls~~~~-------------~-~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---- 399 (590)
T PRK13409 338 ETLVEYPDLTKKLG-------------D-FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---- 399 (590)
T ss_pred ceEEEEcceEEEEC-------------C-EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe----
Confidence 34699999998764 2 24899999999999999999999999999999999999999999986
Q ss_pred ChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++|++|+..+.+.+||+|++.+.... ... ...++++++.+||.+..++.++ +||||||||
T Consensus 400 -----~~i~y~~Q~~~~~~~~tv~e~l~~~~~~-----~~~---~~~~~~~L~~l~l~~~~~~~~~-----~LSGGe~QR 461 (590)
T PRK13409 400 -----LKISYKPQYIKPDYDGTVEDLLRSITDD-----LGS---SYYKSEIIKPLQLERLLDKNVK-----DLSGGELQR 461 (590)
T ss_pred -----eeEEEecccccCCCCCcHHHHHHHHhhh-----cCh---HHHHHHHHHHCCCHHHHhCCcc-----cCCHHHHHH
Confidence 1499999998888899999999875321 111 1246789999999988887765 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
|+||++|+.+|++|+|||||+|||+.++..+.+.|++++++ |.|||++|||+. .+..++||+++|+ |++...|...
T Consensus 462 vaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~-~~~~~aDrvivl~-~~~~~~g~~~ 538 (590)
T PRK13409 462 VAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY-MIDYISDRLMVFE-GEPGKHGHAS 538 (590)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEc-CcceeeeecC
Confidence 99999999999999999999999999999999999999864 899999999986 5778999999996 4887777643
No 335
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=2.7e-38 Score=376.39 Aligned_cols=213 Identities=22% Similarity=0.395 Sum_probs=174.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEEC-CEeCC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYN-GKPFS 116 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~-G~~~~ 116 (508)
.|+++||+++|+.. .++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++ |+++.
T Consensus 382 ~I~~~nVsf~Y~~~----------~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~ 451 (1466)
T PTZ00265 382 KIQFKNVRFHYDTR----------KDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLK 451 (1466)
T ss_pred cEEEEEEEEEcCCC----------CCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchh
Confidence 69999999998621 12469999999999999999999999999999999999999999999994 67764
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHh-cC---------CCC-----------------------------
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALL-QL---------PNS----------------------------- 153 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l-~~---------~~~----------------------------- 153 (508)
+ .+|+.+|||+|++.+|+. |++||+.++... +. +..
T Consensus 452 ~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 530 (1466)
T PTZ00265 452 DINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTD 530 (1466)
T ss_pred hCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccc
Confidence 2 457789999999999985 999999986310 00 000
Q ss_pred C---------CHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 010509 154 F---------TEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSG 217 (508)
Q Consensus 154 ~---------~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsg 217 (508)
. ......+.+.++++.+++.+ ..||.+| .....||||||||++|||||+.+|+|||||||||+
T Consensus 531 ~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg-~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSa 609 (1466)
T PTZ00265 531 SNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVG-SNASKLSGGQKQRISIARAIIRNPKILILDEATSS 609 (1466)
T ss_pred hhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeC-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccc
Confidence 0 00011245677777776654 3467776 34678999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 218 LDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 218 LD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
||+.++..+.+.|+++++ +|+|+|+++|+++. + +.||+|++|++|
T Consensus 610 LD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~-i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 610 LDNKSEYLVQKTINNLKGNENRITIIIAHRLST-I-RYANTIFVLSNR 655 (1466)
T ss_pred cCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHH-H-HhCCEEEEEeCC
Confidence 999999999999999975 58999999999974 4 689999999986
No 336
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=6.4e-38 Score=343.72 Aligned_cols=204 Identities=24% Similarity=0.375 Sum_probs=171.5
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++++++ ++.+|+|+|++|++||+++|+|||||||||||++|+|+.+|++|+|.+++.
T Consensus 321 ~~l~~~~l~~~~~-------------~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~~--- 384 (552)
T TIGR03719 321 KVIEAENLSKGFG-------------DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGET--- 384 (552)
T ss_pred eEEEEeeEEEEEC-------------CeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECCc---
Confidence 3699999999874 357999999999999999999999999999999999999999999999542
Q ss_pred hhccccEEEEecCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCHHHHH
Q 010509 117 NQMTRNTGFVTQED-VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 117 ~~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerq 194 (508)
..+||++|++ .+++.+||.|++.+..... ..... ..+++++++.+|+.+ ..++.++ .|||||||
T Consensus 385 ----~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~---~~~~~--~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGe~q 450 (552)
T TIGR03719 385 ----VKLAYVDQSRDALDPNKTVWEEISGGLDII---QLGKR--EVPSRAYVGRFNFKGSDQQKKVG-----QLSGGERN 450 (552)
T ss_pred ----eEEEEEeCCccccCCCCcHHHHHHhhcccc---ccCcc--hHHHHHHHHhCCCChhHhcCchh-----hCCHHHHH
Confidence 1599999996 4888899999998864321 11111 123567899999964 4566654 89999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC-CeEE-EEcCh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE-GYPL-YSGEA 272 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~-G~iv-~~G~~ 272 (508)
||+||++|+.+|++|||||||+|||+.++..+.+.|+++. | |||++|||+. .+..+||++++|++ |++. +.|+.
T Consensus 451 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~-~viivsHd~~-~~~~~~d~i~~l~~~~~~~~~~g~~ 526 (552)
T TIGR03719 451 RVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--G-CAVVISHDRW-FLDRIATHILAFEGDSHVEWFEGNY 526 (552)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--C-eEEEEeCCHH-HHHHhCCEEEEEECCCeEEEeCCCH
Confidence 9999999999999999999999999999999999999983 3 8999999986 57789999999986 5876 66766
Q ss_pred hh
Q 010509 273 SG 274 (508)
Q Consensus 273 ~~ 274 (508)
++
T Consensus 527 ~~ 528 (552)
T TIGR03719 527 SE 528 (552)
T ss_pred HH
Confidence 54
No 337
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=3.8e-38 Score=313.10 Aligned_cols=189 Identities=25% Similarity=0.372 Sum_probs=160.6
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEE-----------ECCEeCCh---hcc---ccEEEEe
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRIT-----------YNGKPFSN---QMT---RNTGFVT 127 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~-----------~~G~~~~~---~~~---~~i~yv~ 127 (508)
.+|+|+| .+++||+++|+||||||||||||+|+|+++|++|+|. ++|+++.. ..+ ..++|++
T Consensus 15 ~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~ 93 (255)
T cd03236 15 FKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKP 93 (255)
T ss_pred hhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeeec
Confidence 5899999 5999999999999999999999999999999999996 78887643 111 2478999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCC
Q 010509 128 QEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPS 207 (508)
Q Consensus 128 Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~ 207 (508)
|+..+++. ++.+++.+.. .....++.++++++.+||.+..++.+ +.||||||||++||++|+.+|+
T Consensus 94 ~~~~~~~~-~~~~~i~~~l--------~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~LS~G~~qrv~laral~~~p~ 159 (255)
T cd03236 94 QYVDLIPK-AVKGKVGELL--------KKKDERGKLDELVDQLELRHVLDRNI-----DQLSGGELQRVAIAAALARDAD 159 (255)
T ss_pred chhccCch-HHHHHHHHHh--------chhHHHHHHHHHHHHcCCchhhcCCh-----hhCCHHHHHHHHHHHHHHhCCC
Confidence 99888874 8888887642 11233456789999999988777655 4899999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 208 LLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 208 illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
+++|||||+|||+.++..+.+.|++++++|+|||++||++. .+.++||++++|+ |++.+.|
T Consensus 160 illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~-~~~~~ad~i~~l~-~~~~~~~ 220 (255)
T cd03236 160 FYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLA-VLDYLSDYIHCLY-GEPGAYG 220 (255)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHH-HHHHhCCEEEEEC-CCCCcce
Confidence 99999999999999999999999999877999999999986 5777899999995 5566544
No 338
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-37 Score=344.29 Aligned_cols=203 Identities=25% Similarity=0.407 Sum_probs=172.8
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++|+++.++ ++.+|+|+|++|++||+++|+||||||||||||+|+|+.+|++|+|.+++.
T Consensus 311 ~~l~~~~l~~~y~-------------~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~--- 374 (638)
T PRK10636 311 PLLKMEKVSAGYG-------------DRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG--- 374 (638)
T ss_pred ceEEEEeeEEEeC-------------CeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC---
Confidence 3699999999875 357999999999999999999999999999999999999999999999742
Q ss_pred hhccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCHHHH
Q 010509 117 NQMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 117 ~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGer 193 (508)
..+||++|+. .+.+..|+.+++.. . . .....++++++|+.+++. +..++.++ .||||||
T Consensus 375 ----~~igy~~Q~~~~~l~~~~~~~~~~~~---~--~----~~~~~~~~~~~L~~~~l~~~~~~~~~~-----~LSgGek 436 (638)
T PRK10636 375 ----IKLGYFAQHQLEFLRADESPLQHLAR---L--A----PQELEQKLRDYLGGFGFQGDKVTEETR-----RFSGGEK 436 (638)
T ss_pred ----EEEEEecCcchhhCCccchHHHHHHH---h--C----chhhHHHHHHHHHHcCCChhHhcCchh-----hCCHHHH
Confidence 2599999974 35566777776531 1 1 112345678999999996 35677665 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE-EEcCh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL-YSGEA 272 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv-~~G~~ 272 (508)
|||+||++|+.+|++|||||||+|||+.++..+.+.|+++ .| |||++|||+. .+..+||++++|++|+++ +.|+.
T Consensus 437 qRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~g-tvi~vSHd~~-~~~~~~d~i~~l~~G~i~~~~g~~ 512 (638)
T PRK10636 437 ARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EG-ALVVVSHDRH-LLRSTTDDLYLVHDGKVEPFDGDL 512 (638)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-eEEEEeCCHH-HHHHhCCEEEEEECCEEEEcCCCH
Confidence 9999999999999999999999999999999999999987 34 9999999986 678899999999999997 88998
Q ss_pred hhHHH
Q 010509 273 SGAMN 277 (508)
Q Consensus 273 ~~~~~ 277 (508)
++..+
T Consensus 513 ~~~~~ 517 (638)
T PRK10636 513 EDYQQ 517 (638)
T ss_pred HHHHH
Confidence 87644
No 339
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=7.4e-37 Score=293.48 Aligned_cols=229 Identities=21% Similarity=0.313 Sum_probs=197.3
Q ss_pred eeEEEEeEEEEEeccccc-----------cCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcc
Q 010509 37 VTLKFEDIVYKIKMKKGF-----------YGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN 105 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~-----------~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~ 105 (508)
+.++++|+++.+...... +....+.....+|+||||++++||.++|+|+||||||||||+|+|.++|++
T Consensus 2 ~~I~~~~V~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~ 81 (249)
T COG1134 2 VVIKVSNVSKKFRIYHEKSYSLKKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTS 81 (249)
T ss_pred cEEEeeceeEEEecchhhhhhHHHHHHHHhcCCCCcceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCC
Confidence 358889999887754210 111123456789999999999999999999999999999999999999999
Q ss_pred cEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 106 GRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 106 G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
|+|.++|+-... +.- .-.+.|.+|.+||+.+-+.+. ++++++.+++++++++.-+|.+..|.++
T Consensus 82 G~v~v~G~v~~l-i~l-------g~Gf~pelTGreNi~l~~~~~---G~~~~ei~~~~~eIieFaELG~fi~~Pv----- 145 (249)
T COG1134 82 GKVKVTGKVAPL-IEL-------GAGFDPELTGRENIYLRGLIL---GLTRKEIDEKVDEIIEFAELGDFIDQPV----- 145 (249)
T ss_pred ceEEEcceEehh-hhc-------ccCCCcccchHHHHHHHHHHh---CccHHHHHHHHHHHHHHHHHHHHhhCch-----
Confidence 999999974321 111 223457799999999877653 5688999999999999999999999887
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
+.+|.||+-|++.|.+...+|+||++||-.+--|+.-++...+.++++.++++|||+++||++ .+.++|||+++|++|+
T Consensus 146 ktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~-~I~~~Cd~~i~l~~G~ 224 (249)
T COG1134 146 KTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLG-AIKQYCDRAIWLEHGQ 224 (249)
T ss_pred hhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHH-HHHHhcCeeEEEeCCE
Confidence 489999999999999999999999999999999999999999999999888899999999986 6899999999999999
Q ss_pred EEEEcChhhHHHHHHhc
Q 010509 266 PLYSGEASGAMNYFASI 282 (508)
Q Consensus 266 iv~~G~~~~~~~~f~~~ 282 (508)
+.+.|+++++.+++++.
T Consensus 225 i~~~G~~~~vi~~Y~~~ 241 (249)
T COG1134 225 IRMEGSPEEVIPAYEED 241 (249)
T ss_pred EEEcCCHHHHHHHHHHh
Confidence 99999999999998763
No 340
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.1e-37 Score=370.83 Aligned_cols=213 Identities=21% Similarity=0.309 Sum_probs=183.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++||+++|+. +.+.+|+|+|++|+|||.+||+|+||||||||+++|.|++. .+|+|.+||.++++
T Consensus 1217 ~I~f~nVs~~Y~~-----------~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~ 1284 (1490)
T TIGR01271 1217 QMDVQGLTAKYTE-----------AGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNS 1284 (1490)
T ss_pred eEEEEEEEEEeCC-----------CCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEccc
Confidence 6999999999862 13579999999999999999999999999999999999986 79999999999864
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~ 186 (508)
.+|+.++||||++.+|+. |++|||.... ..++ +.+.++++..+|.+ -.|+.++. ...
T Consensus 1285 i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~td----eei~~aL~~~~L~~~i~~lp~GLdt~v~e-~G~ 1352 (1490)
T TIGR01271 1285 VTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWSD----EEIWKVAEEVGLKSVIEQFPDKLDFVLVD-GGY 1352 (1490)
T ss_pred CCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCCH----HHHHHHHHHCCCHHHHHhCcccccccccc-CCC
Confidence 578899999999999986 9999995421 1232 34667777777743 45777763 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++|||||+++|+||+||||||+||..+...|.+.|++.. +++|||+++|+++. + ..+|||++|++|++
T Consensus 1353 nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~-~~~TvI~IaHRl~t-i-~~~DrIlvL~~G~i 1429 (1490)
T TIGR01271 1353 VLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF-SNCTVILSEHRVEA-L-LECQQFLVIEGSSV 1429 (1490)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HhCCEEEEEECCEE
Confidence 799999999999999999999999999999999999999999999875 47999999999863 4 45899999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|+++++.+
T Consensus 1430 vE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1430 KQYDSIQKLLN 1440 (1490)
T ss_pred EEeCCHHHHHc
Confidence 99999998863
No 341
>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]
Probab=100.00 E-value=8.1e-38 Score=358.00 Aligned_cols=225 Identities=26% Similarity=0.436 Sum_probs=205.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.+..+++++.++.. +.+++++|+.|++||+.+++|+|||||||++|+|.|..+|++|++.++|.++..
T Consensus 564 ~~~~~~L~k~y~~~------------~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~ 631 (885)
T KOG0059|consen 564 ALVLNNLSKVYGGK------------DGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITV 631 (885)
T ss_pred eEEEcceeeeecch------------hhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCcccc
Confidence 47778888876521 118999999999999999999999999999999999999999999999998853
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
+.++.+||+||+|.+.+.+|.+|++.+.++++ +.++++.++.++.+++.+||.+.+|+.++ .+|||+
T Consensus 632 ~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlr---G~~~~di~~~v~~ll~~~~L~~~~~~~~~-----~ySgG~ 703 (885)
T KOG0059|consen 632 STDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLR---GLPRSDIGSAIEKLLRLVGLGPYANKQVR-----TYSGGN 703 (885)
T ss_pred ccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHc---CCChhHHHHHHHHHHHHcCChhhhccchh-----hCCCcc
Confidence 26788999999999999999999999999987 45566777789999999999999999886 899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
|||+++|.||+.+|++++|||||+|+||.++++++++++++.++|+.||+|||.++ +.+.+|||+.+|.+|+...-|++
T Consensus 704 kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMe-E~EaLCtR~aImv~G~l~ciGs~ 782 (885)
T KOG0059|consen 704 KRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSME-EAEALCTRTAIMVIGQLRCIGSP 782 (885)
T ss_pred hhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHHhhhhheeecCeeEEecCh
Confidence 99999999999999999999999999999999999999999998889999999986 68899999999999999999999
Q ss_pred hhHHHHHHhcCC
Q 010509 273 SGAMNYFASIGY 284 (508)
Q Consensus 273 ~~~~~~f~~~g~ 284 (508)
++.+++|.. ||
T Consensus 783 q~LKsrfG~-gy 793 (885)
T KOG0059|consen 783 QELKSRYGS-GY 793 (885)
T ss_pred HHHHhhcCC-cE
Confidence 999988864 44
No 342
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4.9e-37 Score=341.63 Aligned_cols=205 Identities=25% Similarity=0.439 Sum_probs=172.8
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++|+++.++ ++++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+ |.++
T Consensus 318 ~~l~~~~l~~~~~-------------~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~- 382 (635)
T PRK11147 318 IVFEMENVNYQID-------------GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL- 382 (635)
T ss_pred ceEEEeeeEEEEC-------------CeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc-
Confidence 4699999999875 357999999999999999999999999999999999999999999998 4332
Q ss_pred hhccccEEEEecCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCHHHHH
Q 010509 117 NQMTRNTGFVTQED-VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 117 ~~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerq 194 (508)
.+||++|+. .+++.+||.|++.+.... . ... ....++.++++.+++. +..++.++ .|||||||
T Consensus 383 -----~i~y~~q~~~~l~~~~tv~e~l~~~~~~-~--~~~--~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGekq 447 (635)
T PRK11147 383 -----EVAYFDQHRAELDPEKTVMDNLAEGKQE-V--MVN--GRPRHVLGYLQDFLFHPKRAMTPVK-----ALSGGERN 447 (635)
T ss_pred -----EEEEEeCcccccCCCCCHHHHHHhhccc-c--ccc--chHHHHHHHHHhcCCCHHHHhChhh-----hCCHHHHH
Confidence 599999985 588999999999875321 1 011 1234578899999996 45676665 89999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe-CCeEE-EEcCh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS-EGYPL-YSGEA 272 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~-~G~iv-~~G~~ 272 (508)
||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||.. .+..+||++++|+ +|++. |.|+-
T Consensus 448 Rl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~---~~tvi~vSHd~~-~~~~~~d~i~~l~~~g~i~~~~g~y 523 (635)
T PRK11147 448 RLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY---QGTVLLVSHDRQ-FVDNTVTECWIFEGNGKIGRYVGGY 523 (635)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC---CCeEEEEECCHH-HHHHhcCEEEEEeCCCeEEEccCCH
Confidence 999999999999999999999999999999999999886 459999999975 5778999999998 89986 56665
Q ss_pred hhH
Q 010509 273 SGA 275 (508)
Q Consensus 273 ~~~ 275 (508)
++-
T Consensus 524 ~~y 526 (635)
T PRK11147 524 HDA 526 (635)
T ss_pred HHH
Confidence 543
No 343
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.7e-37 Score=291.22 Aligned_cols=218 Identities=23% Similarity=0.357 Sum_probs=178.6
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|+++.+... ...++++|+++|+++..|+++-|+|.||||||||+|+|+|.+.|++|+|.++|.++++
T Consensus 2 i~~~~~~~~f~~g--------~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~ 73 (263)
T COG1101 2 ISLSNATKTFFKG--------TPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKK 73 (263)
T ss_pred cccccceeeecCC--------ChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccC
Confidence 4455666554421 1236789999999999999999999999999999999999999999999999999975
Q ss_pred ---hccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCH---HHHHHHHHHHHHH--cCCCcccccccCCCCCCc
Q 010509 118 ---QMTRNTGFVTQEDV--LSPYLTVTETMVFTALLQLPNSFTE---KEKIKCAEAVMTE--LGLSECKNSLIGGPLTRG 187 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~---~~~~~~v~~~l~~--lgL~~~~~~~vg~~~~~~ 187 (508)
.....++-|+|++. ..|.||+.||+..+..-.-.++.+. ..+++...+-++. +||++..++++| -
T Consensus 74 ~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig-----l 148 (263)
T COG1101 74 SVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG-----L 148 (263)
T ss_pred CHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh-----h
Confidence 22346788999974 7999999999998653211122222 2333344455555 467888888887 7
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
|||||||-++++.|-++.|+||+|||-|++|||.++..+++.-.++.+ .+.|.+++||.++ .+.++-+|+++|++|+|
T Consensus 149 LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~-~Al~yG~RlImLh~G~I 227 (263)
T COG1101 149 LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNME-DALDYGNRLIMLHSGKI 227 (263)
T ss_pred ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHH-HHHhhCCeEEEEeCCeE
Confidence 999999999999999999999999999999999999999999999875 4789999999997 46689999999999999
Q ss_pred EEEc
Q 010509 267 LYSG 270 (508)
Q Consensus 267 v~~G 270 (508)
|.+-
T Consensus 228 vlDv 231 (263)
T COG1101 228 VLDV 231 (263)
T ss_pred EEEc
Confidence 9663
No 344
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=7.3e-37 Score=278.47 Aligned_cols=144 Identities=31% Similarity=0.549 Sum_probs=132.5
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~ 118 (508)
++++|+++.+. ++.+++++|+++++||+++|+||||||||||+++|+|+.+|++|+|.++|+
T Consensus 1 l~~~~l~~~~~-------------~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~----- 62 (144)
T cd03221 1 IELENLSKTYG-------------GKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST----- 62 (144)
T ss_pred CEEEEEEEEEC-------------CceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----
Confidence 46788888764 246999999999999999999999999999999999999999999999985
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHH
Q 010509 119 MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSI 198 (508)
Q Consensus 119 ~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 198 (508)
+.++|++| ||+|||||++|
T Consensus 63 --~~i~~~~~-----------------------------------------------------------lS~G~~~rv~l 81 (144)
T cd03221 63 --VKIGYFEQ-----------------------------------------------------------LSGGEKMRLAL 81 (144)
T ss_pred --EEEEEEcc-----------------------------------------------------------CCHHHHHHHHH
Confidence 46899998 89999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 199 GQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 199 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
||+|+.+|+++++||||+|||+.++..+.+.|+++ ++|++++||+++ .+...+|++++|++|+
T Consensus 82 aral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~---~~til~~th~~~-~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 82 AKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY---PGTVILVSHDRY-FLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEECCHH-HHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999987 479999999986 5778899999999985
No 345
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-36 Score=338.44 Aligned_cols=207 Identities=24% Similarity=0.376 Sum_probs=166.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+++++ ++.+|+||||+|++||+++|+||||||||||||+|+|..+|++|+|.++|..
T Consensus 1 ~i~i~nls~~~g-------------~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~--- 64 (638)
T PRK10636 1 MIVFSSLQIRRG-------------VRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW--- 64 (638)
T ss_pred CEEEEEEEEEeC-------------CceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC---
Confidence 378999999875 4679999999999999999999999999999999999999999999998742
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHH-----------------------HhcC-CCCCCHHHHHHHHHHHHHHcCCC
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTA-----------------------LLQL-PNSFTEKEKIKCAEAVMTELGLS 173 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~-----------------------~l~~-~~~~~~~~~~~~v~~~l~~lgL~ 173 (508)
.++|++|+.... ..|+.+.+.-.. .+.. .......+..++++++++.+|+.
T Consensus 65 ----~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~ 139 (638)
T PRK10636 65 ----QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFS 139 (638)
T ss_pred ----EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCC
Confidence 388999865333 246555432110 0000 00000112345788999999997
Q ss_pred -cccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHH
Q 010509 174 -ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLY 252 (508)
Q Consensus 174 -~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~ 252 (508)
+..++.++ .|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ +.|||++|||+. .+.
T Consensus 140 ~~~~~~~~~-----~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~---~~tviivsHd~~-~l~ 210 (638)
T PRK10636 140 NEQLERPVS-----DFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY---QGTLILISHDRD-FLD 210 (638)
T ss_pred chhhcCchh-----hcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC---CCeEEEEeCCHH-HHH
Confidence 56677765 89999999999999999999999999999999999999999999876 469999999986 577
Q ss_pred hhccEEEEEeCCeEE-EEcChhh
Q 010509 253 YMFHKVLLLSEGYPL-YSGEASG 274 (508)
Q Consensus 253 ~~~D~v~lL~~G~iv-~~G~~~~ 274 (508)
..||++++|++|+++ |.|+.+.
T Consensus 211 ~~~d~i~~L~~G~i~~~~g~~~~ 233 (638)
T PRK10636 211 PIVDKIIHIEQQSLFEYTGNYSS 233 (638)
T ss_pred HhcCEEEEEeCCEEEEecCCHHH
Confidence 899999999999996 6776553
No 346
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=5e-37 Score=281.13 Aligned_cols=227 Identities=20% Similarity=0.416 Sum_probs=196.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
-++++||++.+....+.++. ....+++.|||+++.|+.+||+|.||||||||.|+|+|.++|++|+|.+||+++.-
T Consensus 4 LLeV~nLsKtF~~~~~lf~r----~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~ 79 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRR----QTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHF 79 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhh----hhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccc
Confidence 47889999887644333322 24568999999999999999999999999999999999999999999999998742
Q ss_pred ----hccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCH
Q 010509 118 ----QMTRNTGFVTQEDV--LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSG 190 (508)
...++|-+++||+. +.|.+.+.+-|.... ++..+++.+++.+++.+.|+.+||.+ .++ -+++.||-
T Consensus 80 ~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL--~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan-----~~~~~la~ 152 (267)
T COG4167 80 GDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPL--RLNTDLEPEQRRKQIFETLRMVGLLPDHAN-----YYPHMLAP 152 (267)
T ss_pred cchHhhhhheeeeecCCccccChhhhhhhHhcchh--hhcccCChHHHHHHHHHHHHHhccCccccc-----cchhhcCc
Confidence 23467999999974 788888888887664 44456788889999999999999964 344 34569999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||++||||+.+|+|++.||...+||...+.++.++..+|.++ |.+-|.++.+.. .+..++|+|+||++|++++.
T Consensus 153 ~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG-~iKHi~D~viVM~EG~vvE~ 231 (267)
T COG4167 153 GQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIG-MIKHISDQVLVMHEGEVVER 231 (267)
T ss_pred hhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhh-HhhhhcccEEEEecCceeec
Confidence 9999999999999999999999999999999999999999999865 999999999986 78999999999999999999
Q ss_pred cChhhHH
Q 010509 270 GEASGAM 276 (508)
Q Consensus 270 G~~~~~~ 276 (508)
|.+.++.
T Consensus 232 G~t~~v~ 238 (267)
T COG4167 232 GSTADVL 238 (267)
T ss_pred CChhhhh
Confidence 9988764
No 347
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=3.1e-36 Score=337.16 Aligned_cols=206 Identities=20% Similarity=0.351 Sum_probs=168.5
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|+++.++. ++.+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.+++.
T Consensus 507 ~~L~~~~ls~~y~~------------~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~~--- 571 (718)
T PLN03073 507 PIISFSDASFGYPG------------GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK--- 571 (718)
T ss_pred ceEEEEeeEEEeCC------------CCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECCc---
Confidence 46999999998741 246999999999999999999999999999999999999999999998752
Q ss_pred hhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCHHHHHH
Q 010509 117 NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 117 ~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqR 195 (508)
..+||++|+. .+.+++.++.........+ ... .++++++++.+|+.+ ..++.+ +.||||||||
T Consensus 572 ----~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~-----~~LSgGqkqR 635 (718)
T PLN03073 572 ----VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPM-----YTLSGGQKSR 635 (718)
T ss_pred ----eeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCc-----cccCHHHHHH
Confidence 3599999985 3456666664332211111 111 245788999999974 556555 4899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE-EEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL-YSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv-~~G~~~~ 274 (508)
|+||++|+.+|++|+|||||+|||+.++..+++.|++. .| |||++|||+. .+..+||++++|++|+++ +.|+.++
T Consensus 636 vaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~g-tvIivSHd~~-~i~~~~drv~~l~~G~i~~~~g~~~~ 711 (718)
T PLN03073 636 VAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QG-GVLMVSHDEH-LISGSVDELWVVSEGKVTPFHGTFHD 711 (718)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CC-EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 99999999999999999999999999999998888775 34 9999999986 577899999999999998 7887765
Q ss_pred HHH
Q 010509 275 AMN 277 (508)
Q Consensus 275 ~~~ 277 (508)
..+
T Consensus 712 ~~~ 714 (718)
T PLN03073 712 YKK 714 (718)
T ss_pred HHH
Confidence 443
No 348
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.7e-36 Score=284.98 Aligned_cols=145 Identities=27% Similarity=0.448 Sum_probs=130.6
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
++.+++++ +++++||+++|+||||||||||+|+|+|+++|++|+|.++|++ ++|++|+..
T Consensus 12 ~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~--------i~~~~q~~~----------- 71 (177)
T cd03222 12 VFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT--------PVYKPQYID----------- 71 (177)
T ss_pred CEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE--------EEEEcccCC-----------
Confidence 46788885 8999999999999999999999999999999999999999864 788888532
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 010509 143 VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTI 222 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~ 222 (508)
||||||||++||++|+.+|++++|||||+|||+.+
T Consensus 72 ---------------------------------------------LSgGq~qrv~laral~~~p~lllLDEPts~LD~~~ 106 (177)
T cd03222 72 ---------------------------------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQ 106 (177)
T ss_pred ---------------------------------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHH
Confidence 89999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCC-CEEEEEecCcchHHHhhccEEEEEeCCeEEEE--cChh
Q 010509 223 AQQILSILLKLANGG-RTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS--GEAS 273 (508)
Q Consensus 223 ~~~i~~~L~~l~~~g-~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~--G~~~ 273 (508)
+..+.+.++++++++ .|||++||++. .+.+++|++++|+++-.++. |+|.
T Consensus 107 ~~~l~~~l~~~~~~~~~tiiivsH~~~-~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 107 RLNAARAIRRLSEEGKKTALVVEHDLA-VLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEECCHH-HHHHhCCEEEEEcCCCccceeccCCc
Confidence 999999999997764 99999999986 56778999999998876655 5554
No 349
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=3.9e-36 Score=282.26 Aligned_cols=158 Identities=22% Similarity=0.301 Sum_probs=134.1
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
.+++|+|+||++++||+++|+||||||||||||+|.+ ++|++.++|... ...++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G~v~~~~~~~-~~~~~~~~~~~q-------------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASGKARLISFLP-KFSRNKLIFIDQ-------------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh----cCCcEEECCccc-ccccccEEEEhH--------------
Confidence 4679999999999999999999999999999999963 689999988732 222345788877
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCCC
Q 010509 143 VFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEILIN--PSLLFLDEPTSGLD 219 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~--P~illLDEPtsgLD 219 (508)
.++++.++|.+. .++.+ +.||||||||++||++|+.+ |++++|||||+|||
T Consensus 68 ---------------------~~~l~~~~L~~~~~~~~~-----~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD 121 (176)
T cd03238 68 ---------------------LQFLIDVGLGYLTLGQKL-----STLSGGELQRVKLASELFSEPPGTLFILDEPSTGLH 121 (176)
T ss_pred ---------------------HHHHHHcCCCccccCCCc-----CcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCC
Confidence 135777888653 55544 58999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 220 STIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 220 ~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
+.++..+.+.|++++++|+|||++||++.. + +.+|++++|.+|+..
T Consensus 122 ~~~~~~l~~~l~~~~~~g~tvIivSH~~~~-~-~~~d~i~~l~~g~~~ 167 (176)
T cd03238 122 QQDINQLLEVIKGLIDLGNTVILIEHNLDV-L-SSADWIIDFGPGSGK 167 (176)
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEECCCCCC
Confidence 999999999999998789999999999864 4 679999999765443
No 350
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=2.6e-36 Score=336.73 Aligned_cols=198 Identities=21% Similarity=0.337 Sum_probs=163.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++ +++.+|+|+|+++++||+++|+||||||||||+|+|+|+.++.+|+|.+++
T Consensus 451 ~i~~~nv~~~~~------------~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~----- 513 (659)
T TIGR00954 451 GIKFENIPLVTP------------NGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA----- 513 (659)
T ss_pred eEEEEeeEEECC------------CCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----
Confidence 589999999764 134699999999999999999999999999999999999999999998864
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC----CCCCCccCHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG----GPLTRGVSGGER 193 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg----~~~~~~LSGGer 193 (508)
++.++||+|++.+++. |++||+.++........ +...+++++++++.+|+.+..++..| ......||||||
T Consensus 514 --~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~~--~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqk 588 (659)
T TIGR00954 514 --KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMKR--RGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEK 588 (659)
T ss_pred --CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhhc--cCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHH
Confidence 4579999999998887 99999987532110000 00113456788999999876554321 113468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
||++|||+|+++|++++|||||+|||+.++..+.+.+++. |+|+|+++|+++. .+.+|++++|+
T Consensus 589 QRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~---~~tvI~isH~~~~--~~~~d~il~l~ 652 (659)
T TIGR00954 589 QRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF---GITLFSVSHRKSL--WKYHEYLLYMD 652 (659)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc---CCEEEEEeCchHH--HHhCCEEEEEe
Confidence 9999999999999999999999999999999999988763 8999999999863 47799999997
No 351
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=6.2e-36 Score=332.82 Aligned_cols=205 Identities=23% Similarity=0.360 Sum_probs=163.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+++++ ++.+|+|+||++++||+++|+||||||||||||+|+|+.+|++|+|.++|..
T Consensus 3 ~l~i~~ls~~~~-------------~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~--- 66 (635)
T PRK11147 3 LISIHGAWLSFS-------------DAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL--- 66 (635)
T ss_pred EEEEeeEEEEeC-------------CceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC---
Confidence 589999999875 3679999999999999999999999999999999999999999999998632
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHH------------------------------HHhc--CCCCCCHHHHHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFT------------------------------ALLQ--LPNSFTEKEKIKCAEA 165 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~------------------------------~~l~--~~~~~~~~~~~~~v~~ 165 (508)
.++|++|++......++.+++..+ ..+. .. .....+..+++++
T Consensus 67 ----~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~ 141 (635)
T PRK11147 67 ----IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLD-HHNLWQLENRINE 141 (635)
T ss_pred ----EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHH-hcCcccHHHHHHH
Confidence 267777765433334565543211 0000 00 0001123457889
Q ss_pred HHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEec
Q 010509 166 VMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH 245 (508)
Q Consensus 166 ~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H 245 (508)
+++.+|+.. ++.+ ..|||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++. .|||++||
T Consensus 142 ~l~~lgl~~--~~~~-----~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~---~tvlivsH 211 (635)
T PRK11147 142 VLAQLGLDP--DAAL-----SSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ---GSIIFISH 211 (635)
T ss_pred HHHhCCCCC--CCch-----hhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC---CEEEEEeC
Confidence 999999963 5555 4899999999999999999999999999999999999999999999873 59999999
Q ss_pred CcchHHHhhccEEEEEeCCeEE-EEcChhh
Q 010509 246 QPSNMLYYMFHKVLLLSEGYPL-YSGEASG 274 (508)
Q Consensus 246 ~~~~~~~~~~D~v~lL~~G~iv-~~G~~~~ 274 (508)
|+. .+...||++++|++|+++ |.|+.++
T Consensus 212 d~~-~l~~~~d~i~~L~~G~i~~~~g~~~~ 240 (635)
T PRK11147 212 DRS-FIRNMATRIVDLDRGKLVSYPGNYDQ 240 (635)
T ss_pred CHH-HHHHhcCeEEEEECCEEEEecCCHHH
Confidence 986 577899999999999997 5687653
No 352
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=4.4e-36 Score=359.86 Aligned_cols=206 Identities=23% Similarity=0.363 Sum_probs=171.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++.. .++++|+|+|+++++||.++|+||||||||||+++|.|.++|.+|.+.
T Consensus 614 ~I~~~~vsF~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-------- 675 (1495)
T PLN03232 614 AISIKNGYFSWDSK----------TSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV-------- 675 (1495)
T ss_pred cEEEEeeEEEcCCC----------CCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE--------
Confidence 59999999997521 135799999999999999999999999999999999999999998763
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCCCccCH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-------ECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~~~LSG 190 (508)
..++.++||+|++.+++. |++||+.|+.. .++ ++.+++++..+|. +-.+|.+|+ ....|||
T Consensus 676 ~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~------~~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe-~G~~LSG 743 (1495)
T PLN03232 676 VIRGSVAYVPQVSWIFNA-TVRENILFGSD------FES----ERYWRAIDVTALQHDLDLLPGRDLTEIGE-RGVNISG 743 (1495)
T ss_pred EecCcEEEEcCccccccc-cHHHHhhcCCc------cCH----HHHHHHHHHhCCHHHHHhCCCCCCceecC-CCcccCH
Confidence 246789999999999975 99999998631 222 3345555555543 345788884 4568999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSI-LLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~-L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
|||||++||||+..+|+|++||||||+||+.++.++++. ++.+ .+|+|+|++||+++ ....+|+|++|++|+++..
T Consensus 744 GQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~-l~~kT~IlvTH~~~--~l~~aD~Ii~L~~G~i~~~ 820 (1495)
T PLN03232 744 GQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDE-LKGKTRVLVTNQLH--FLPLMDRIILVSEGMIKEE 820 (1495)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhh-hcCCEEEEEECChh--hHHhCCEEEEEeCCEEEEe
Confidence 999999999999999999999999999999999999765 4443 35899999999986 3467999999999999999
Q ss_pred cChhhHH
Q 010509 270 GEASGAM 276 (508)
Q Consensus 270 G~~~~~~ 276 (508)
|+.++..
T Consensus 821 Gt~~eL~ 827 (1495)
T PLN03232 821 GTFAELS 827 (1495)
T ss_pred cCHHHHH
Confidence 9988875
No 353
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=9.3e-36 Score=357.78 Aligned_cols=205 Identities=23% Similarity=0.371 Sum_probs=172.7
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcc-cEEEECCEeCC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN-GRITYNGKPFS 116 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~-G~I~~~G~~~~ 116 (508)
.++++|++++++.. .++++|+|+|+++++||.++|+||||||||||+++|.|.++|.+ |+|.+
T Consensus 614 ~I~~~nvsf~y~~~----------~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l------ 677 (1622)
T PLN03130 614 AISIKNGYFSWDSK----------AERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI------ 677 (1622)
T ss_pred ceEEEeeEEEccCC----------CCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE------
Confidence 59999999997521 13569999999999999999999999999999999999999999 99975
Q ss_pred hhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCCCccC
Q 010509 117 NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLTRGVS 189 (508)
Q Consensus 117 ~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~~~LS 189 (508)
++.++||+|++.+++. |++||+.|+.. .+ +++.+++++..+|.+ -.+|.+|. ....||
T Consensus 678 ---~~~Iayv~Q~p~Lfng-TIreNI~fg~~------~d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe-~G~~LS 742 (1622)
T PLN03130 678 ---RGTVAYVPQVSWIFNA-TVRDNILFGSP------FD----PERYERAIDVTALQHDLDLLPGGDLTEIGE-RGVNIS 742 (1622)
T ss_pred ---cCeEEEEcCccccCCC-CHHHHHhCCCc------cc----HHHHHHHHHHhCcHHHHHhCCCcccccccC-CCCCCC
Confidence 4569999999999974 99999998632 12 234556666666543 34788874 356799
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS-ILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
||||||++||||+..+|+|++||||||+||+.+..++.+ .++.+. +|+|+|++||+++ ....+|+|++|++|+++.
T Consensus 743 GGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l-~~kTvIlVTH~l~--~l~~aD~Ii~L~~G~i~e 819 (1622)
T PLN03130 743 GGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL-RGKTRVLVTNQLH--FLSQVDRIILVHEGMIKE 819 (1622)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh-cCCEEEEEECCHh--HHHhCCEEEEEeCCEEEE
Confidence 999999999999999999999999999999999998875 455543 5899999999985 346799999999999999
Q ss_pred EcChhhHH
Q 010509 269 SGEASGAM 276 (508)
Q Consensus 269 ~G~~~~~~ 276 (508)
.|+.++..
T Consensus 820 ~Gt~~eL~ 827 (1622)
T PLN03130 820 EGTYEELS 827 (1622)
T ss_pred eCCHHHHH
Confidence 99988875
No 354
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.7e-35 Score=271.33 Aligned_cols=152 Identities=38% Similarity=0.745 Sum_probs=137.8
Q ss_pred EEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh---
Q 010509 41 FEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--- 117 (508)
Q Consensus 41 ~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--- 117 (508)
++|+++.++ .+.+++++|+++++||+++|+||||||||||+++|+|.+++.+|+|.++|.++..
T Consensus 2 ~~~~~~~~~-------------~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~ 68 (157)
T cd00267 2 IENLSFRYG-------------GRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPL 68 (157)
T ss_pred eEEEEEEeC-------------CeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCH
Confidence 567777764 3469999999999999999999999999999999999999999999999997643
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.++|++| |||||+||+
T Consensus 69 ~~~~~~i~~~~q-----------------------------------------------------------lS~G~~~r~ 89 (157)
T cd00267 69 EELRRRIGYVPQ-----------------------------------------------------------LSGGQRQRV 89 (157)
T ss_pred HHHHhceEEEee-----------------------------------------------------------CCHHHHHHH
Confidence 34567899988 899999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
+||++++.+|++++|||||+|||..++..+.+.++++.++++|++++||+++ .+...+|++++|++|+
T Consensus 90 ~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~-~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 90 ALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPE-LAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HHHHhCCEEEEEeCcC
Confidence 9999999999999999999999999999999999999777899999999986 5667889999999875
No 355
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.8e-36 Score=302.63 Aligned_cols=217 Identities=29% Similarity=0.450 Sum_probs=185.2
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.+.|+|+++.+. +.+++|+++||++++|+.+|++||||+||||++++|-..+.+.+|.|.++|+++..
T Consensus 262 ~v~F~~V~F~y~------------~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~ 329 (497)
T COG5265 262 AVAFINVSFAYD------------PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRD 329 (497)
T ss_pred eEEEEEEEeecc------------ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHH
Confidence 488999999886 25789999999999999999999999999999999999999999999999999853
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHH-----HHHHcCCCcccccccCCCCCCcc
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEA-----VMTELGLSECKNSLIGGPLTRGV 188 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~-----~l~~lgL~~~~~~~vg~~~~~~L 188 (508)
..|+.||.||||..||.. |...|+.++. ...+.++..+.++. .++ .+.+..|+.||.. .-.|
T Consensus 330 vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr-----~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vger-glkl 400 (497)
T COG5265 330 VTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGR-----PDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGER-GLKL 400 (497)
T ss_pred hHHHHHHHHhCcCcccceehhh-hHHHHHhccC-----ccccHHHHHHHHHHhhhhHHHH--hCchhhhcccchh-eeec
Confidence 568899999999999875 9999998863 23345554433332 222 3567788999843 3468
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
||||||||+|||+++.+|+||+|||.||.||..+.+++...|++++ .|+|-+++-|.++. +. -+|.+++|++|+|++
T Consensus 401 Sggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~-~~rttlviahrlst-i~-~adeiivl~~g~i~e 477 (497)
T COG5265 401 SGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS-AGRTTLVIAHRLST-II-DADEIIVLDNGRIVE 477 (497)
T ss_pred cCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh-CCCeEEEEeehhhh-cc-CCceEEEeeCCEEEe
Confidence 9999999999999999999999999999999999999999999987 57999999999985 43 479999999999999
Q ss_pred EcChhhHHHH
Q 010509 269 SGEASGAMNY 278 (508)
Q Consensus 269 ~G~~~~~~~~ 278 (508)
.|+-++++..
T Consensus 478 rg~h~~ll~~ 487 (497)
T COG5265 478 RGTHEELLAA 487 (497)
T ss_pred cCcHHHHHHc
Confidence 9998877653
No 356
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=1.2e-35 Score=326.70 Aligned_cols=181 Identities=28% Similarity=0.386 Sum_probs=155.7
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEE-----------ECCEeCChh------ccccEEEE
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRIT-----------YNGKPFSNQ------MTRNTGFV 126 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~-----------~~G~~~~~~------~~~~i~yv 126 (508)
..+|++++ .+++||+++|+||||||||||||+|+|+++|++|+|. ++|+++... .+..+++.
T Consensus 87 ~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 165 (590)
T PRK13409 87 GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHK 165 (590)
T ss_pred ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeec
Confidence 46999999 9999999999999999999999999999999999998 999887431 12346666
Q ss_pred ecCCCCCCC---CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh
Q 010509 127 TQEDVLSPY---LTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL 203 (508)
Q Consensus 127 ~Q~~~l~~~---lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~ 203 (508)
+|.....|. .||+|++... +..++++++++.+||.+..|+.++ +|||||||||+||++|+
T Consensus 166 ~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~qrv~ia~al~ 228 (590)
T PRK13409 166 PQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLENILDRDIS-----ELSGGELQRVAIAAALL 228 (590)
T ss_pred ccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHh
Confidence 665444333 3999988631 123568899999999988888775 89999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 204 INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 204 ~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
.+|++|+|||||++||+.++..+.+.|+++++ |+|||+++|+++ .+..++|++++|+++
T Consensus 229 ~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~-g~tvIivsHd~~-~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 229 RDADFYFFDEPTSYLDIRQRLNVARLIRELAE-GKYVLVVEHDLA-VLDYLADNVHIAYGE 287 (590)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC-CCEEEEEeCCHH-HHHHhCCEEEEEeCC
Confidence 99999999999999999999999999999988 999999999986 577899999999864
No 357
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=263.86 Aligned_cols=190 Identities=27% Similarity=0.480 Sum_probs=165.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC---CcccEEEECCEe
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG---RINGRITYNGKP 114 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~---~~~G~I~~~G~~ 114 (508)
.+.++|++...+ +.-.|-|+|++|.+||++-|||||||||||||..+.|.+. ..+|++++|+++
T Consensus 2 ~l~l~nvsl~l~-------------g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~ 68 (213)
T COG4136 2 MLCLKNVSLRLP-------------GSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQR 68 (213)
T ss_pred ceeeeeeeecCC-------------CceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCee
Confidence 467888886543 4678999999999999999999999999999999999874 358999999999
Q ss_pred CCh--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 115 FSN--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 115 ~~~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
++. ..+|++|.++||+.+||.++|.+|+.|+. |.....+.+++.++..+++.||....++.. .+|||||
T Consensus 69 l~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAl----p~~~KG~aRr~~a~aAL~~~gL~g~f~~dP-----~tlSGGQ 139 (213)
T COG4136 69 LDMLPAAQRQIGILFQDALLFPHLSVGQNLLFAL----PATLKGNARRNAANAALERSGLDGAFHQDP-----ATLSGGQ 139 (213)
T ss_pred ccccchhhhheeeeecccccccccccccceEEec----CcccccHHHHhhHHHHHHHhccchhhhcCh-----hhcCcch
Confidence 864 45789999999999999999999999874 334444567778899999999998887654 4999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH-HcCCCEEEEEecCcch
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL-ANGGRTIVMTIHQPSN 249 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l-~~~g~tii~s~H~~~~ 249 (508)
|-||++-|+|+..|+.++||||+|.||..-+.++.+..-.- ...|...|.+|||..+
T Consensus 140 rARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~D 197 (213)
T COG4136 140 RARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQD 197 (213)
T ss_pred HHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccccc
Confidence 99999999999999999999999999999999999987654 4569999999999753
No 358
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=8.8e-35 Score=349.17 Aligned_cols=209 Identities=22% Similarity=0.426 Sum_probs=170.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++.++. ..+++|+|+|+++++||+++|+||||||||||+++|+|.++|++|+|.++|
T Consensus 636 ~i~~~~~~~~~~~-----------~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g----- 699 (1522)
T TIGR00957 636 SITVHNATFTWAR-----------DLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG----- 699 (1522)
T ss_pred cEEEEEeEEEcCC-----------CCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-----
Confidence 6999999998751 125699999999999999999999999999999999999999999999987
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHH--HHHHHcCCC-cccccccCCCCCCccCHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAE--AVMTELGLS-ECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~--~~l~~lgL~-~~~~~~vg~~~~~~LSGGerq 194 (508)
.++||+|++.+++ .|++||+.|+.. .++++.++.++ ++.+.++.. +..+|.+| +...+|||||||
T Consensus 700 ----~i~yv~Q~~~l~~-~Ti~eNI~~g~~------~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig-~~g~~LSGGQkq 767 (1522)
T TIGR00957 700 ----SVAYVPQQAWIQN-DSLRENILFGKA------LNEKYYQQVLEACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQ 767 (1522)
T ss_pred ----EEEEEcCCccccC-CcHHHHhhcCCc------cCHHHHHHHHHHhCCHHHHHhcCCCCCceec-CCCCCCCHHHHH
Confidence 4899999998875 699999998632 12222221111 122333332 23456676 346789999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH--cCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA--NGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~--~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
|++||||++.+|++++||||||+||+.++.++.+.+.+.. .+|+|+|++||+++. + ..+|++++|++|+++..|+.
T Consensus 768 RiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~-l-~~~D~ii~l~~G~i~~~g~~ 845 (1522)
T TIGR00957 768 RVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISY-L-PQVDVIIVMSGGKISEMGSY 845 (1522)
T ss_pred HHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhh-h-hhCCEEEEecCCeEEeeCCH
Confidence 9999999999999999999999999999999999997542 357999999999863 4 45999999999999999998
Q ss_pred hhHH
Q 010509 273 SGAM 276 (508)
Q Consensus 273 ~~~~ 276 (508)
++..
T Consensus 846 ~~l~ 849 (1522)
T TIGR00957 846 QELL 849 (1522)
T ss_pred HHHH
Confidence 8875
No 359
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-35 Score=267.11 Aligned_cols=215 Identities=26% Similarity=0.428 Sum_probs=171.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe---
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP--- 114 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~--- 114 (508)
.++++++++.|. ...-.+||||++.|||+++|+|+|||||||||++|++++.|+.|+|.|.-.+
T Consensus 6 LL~V~~lsk~Yg-------------~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~ 72 (258)
T COG4107 6 LLSVSGLSKLYG-------------PGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQP 72 (258)
T ss_pred ceeehhhhhhhC-------------CCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCc
Confidence 588999998865 3446789999999999999999999999999999999999999999997532
Q ss_pred CC-----h-h----ccccEEEEecCCC--CCCCC----CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 010509 115 FS-----N-Q----MTRNTGFVTQEDV--LSPYL----TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNS 178 (508)
Q Consensus 115 ~~-----~-~----~~~~i~yv~Q~~~--l~~~l----Tv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 178 (508)
.. + + .|..-|+|.|++. +-... .+.|-+.-.. .|. -...++.+.++|+++.++..+
T Consensus 73 ~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G-~RH-----YG~iR~~a~~WL~~VEI~~~R-- 144 (258)
T COG4107 73 RDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG-ARH-----YGNIRAEAQDWLEEVEIDLDR-- 144 (258)
T ss_pred hhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhh-hhh-----hhhHHHHHHHHHHhcccCccc--
Confidence 21 1 1 2346799999864 32222 2334332111 111 123455677899998886432
Q ss_pred ccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccE
Q 010509 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 179 ~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~ 257 (508)
+ +..|+..|||+|||+.|||.|++.|+++|+||||-|||...+..++++++.|..+ |.+++++|||.. .+.-++||
T Consensus 145 -i-DD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~-VarLla~r 221 (258)
T COG4107 145 -I-DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLADR 221 (258)
T ss_pred -c-cCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhH-HHHHhhhc
Confidence 2 2457899999999999999999999999999999999999999999999999865 999999999986 56678999
Q ss_pred EEEEeCCeEEEEcChhhHH
Q 010509 258 VLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 258 v~lL~~G~iv~~G~~~~~~ 276 (508)
.++|++|+++..|-++.++
T Consensus 222 lmvmk~g~vve~GLTDrvL 240 (258)
T COG4107 222 LMVMKQGQVVESGLTDRVL 240 (258)
T ss_pred ceeecCCCEeccccccccc
Confidence 9999999999999887654
No 360
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=6.3e-34 Score=340.93 Aligned_cols=193 Identities=27% Similarity=0.449 Sum_probs=157.9
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
+++|+|+|+++++||+++|+|||||||||||++|+|..+|++|+|.++| .++||+|++.+++. ||+||+.
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g---------~iayv~Q~~~l~~~-Ti~eNI~ 508 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG---------RISFSPQTSWIMPG-TIKDNII 508 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC---------EEEEEeCCCccCCc-cHHHHHH
Confidence 5699999999999999999999999999999999999999999999987 38999999999885 9999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHH--HHHHHcCC-CcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010509 144 FTALLQLPNSFTEKEKIKCAE--AVMTELGL-SECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~--~~l~~lgL-~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~ 220 (508)
|+... +.+..++..+ .+.+.+.. .+..+|.+|. ....||||||||++||||++.+|++++||||||+||+
T Consensus 509 ~g~~~------~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~-~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~ 581 (1490)
T TIGR01271 509 FGLSY------DEYRYTSVIKACQLEEDIALFPEKDKTVLGE-GGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV 581 (1490)
T ss_pred hcccc------chHHHHHHHHHHhHHHHHHhccccccccccC-cCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 86421 1111111111 11222221 2223456663 4678999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHH
Q 010509 221 TIAQQILSI-LLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 221 ~~~~~i~~~-L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
.++.++.+. ++++. +|+|+|++||+++. + ..+|++++|++|+++..|+.++..
T Consensus 582 ~~~~~i~~~~l~~~~-~~~tvilvtH~~~~-~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 582 VTEKEIFESCLCKLM-SNKTRILVTSKLEH-L-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred HHHHHHHHHHHHHHh-cCCeEEEEeCChHH-H-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999985 66665 48999999999874 4 459999999999999999988775
No 361
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-34 Score=264.42 Aligned_cols=188 Identities=25% Similarity=0.411 Sum_probs=165.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++.+||+.+.+ +..++.++||++.+||++-|.||||||||||||+|+|+..|.+|+|.++|.++..
T Consensus 2 ~L~a~~L~~~R~-------------e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~ 68 (209)
T COG4133 2 MLEAENLSCERG-------------ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQN 68 (209)
T ss_pred cchhhhhhhccC-------------cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCcc
Confidence 355677776543 5789999999999999999999999999999999999999999999999998864
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq 194 (508)
..++.+-|+--.+.+=+.|||.|||.|-....-. . ..+.+.++++.+||....|..++ .||-||||
T Consensus 69 ~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~--~----~~~~i~~Al~~vgL~g~~dlp~~-----~LSAGQqR 137 (209)
T COG4133 69 VRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGS--G----NAATIWEALAQVGLAGLEDLPVG-----QLSAGQQR 137 (209)
T ss_pred chhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCC--C----chhhHHHHHHHcCcccccccchh-----hcchhHHH
Confidence 2446777888888888999999999998765321 1 12457889999999999999886 89999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcch
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSN 249 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~ 249 (508)
||+|||-.++.+++=|||||+++||......+-..+..-+.+|-.||.+||||..
T Consensus 138 RvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~ 192 (209)
T COG4133 138 RVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLP 192 (209)
T ss_pred HHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccC
Confidence 9999999999999999999999999999999999999888889999999999874
No 362
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=7.6e-34 Score=306.07 Aligned_cols=206 Identities=28% Similarity=0.444 Sum_probs=172.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++++ .+++++|+|+++.+|+.+||+|+||||||||||+|+|...|++|+|...+.
T Consensus 3 ~i~~~~ls~~~g-------------~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~---- 65 (530)
T COG0488 3 MITLENLSLAYG-------------DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG---- 65 (530)
T ss_pred eEEEeeeEEeeC-------------CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC----
Confidence 688999999875 588999999999999999999999999999999999999999999987532
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhc-------------CCCC--------------CCHHHHHHHHHHHHHHc
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQ-------------LPNS--------------FTEKEKIKCAEAVMTEL 170 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~-------------~~~~--------------~~~~~~~~~v~~~l~~l 170 (508)
-.++|++|++.+.+..||.+.+.-+..-. ++.. ...-+.+.+++.++..+
T Consensus 66 ---~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL 142 (530)
T COG0488 66 ---LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL 142 (530)
T ss_pred ---ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC
Confidence 25999999999999999999876543210 0000 00001235678889999
Q ss_pred CCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchH
Q 010509 171 GLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNM 250 (508)
Q Consensus 171 gL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~ 250 (508)
|+.+. ++.++ +||||||.||+||++|+.+|++|+|||||++||..+..-+-+.|++. +| |+|++||| +..
T Consensus 143 g~~~~-~~~~~-----~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~--~g-tviiVSHD-R~F 212 (530)
T COG0488 143 GFPDE-DRPVS-----SLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY--PG-TVIVVSHD-RYF 212 (530)
T ss_pred CCCcc-cCchh-----hcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC--CC-cEEEEeCC-HHH
Confidence 99887 77776 89999999999999999999999999999999999999999999865 46 99999999 568
Q ss_pred HHhhccEEEEEeCCeEE-EEcChh
Q 010509 251 LYYMFHKVLLLSEGYPL-YSGEAS 273 (508)
Q Consensus 251 ~~~~~D~v~lL~~G~iv-~~G~~~ 273 (508)
+-..|++|+-++.|++. |.|.-+
T Consensus 213 Ld~V~t~I~~ld~g~l~~y~Gny~ 236 (530)
T COG0488 213 LDNVATHILELDRGKLTPYKGNYS 236 (530)
T ss_pred HHHHhhheEEecCCceeEecCCHH
Confidence 89999999999999875 667654
No 363
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=5.8e-34 Score=318.87 Aligned_cols=216 Identities=21% Similarity=0.267 Sum_probs=158.1
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC---CCcccEEEECC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL---GRINGRITYNG 112 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~---~~~~G~I~~~G 112 (508)
+-.|+++|++++|+ ++.+|+|+||+|++||.+||+||||||||||||+|+|+. .|.+|+|.+.+
T Consensus 175 ~~~I~i~nls~~y~-------------~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~ 241 (718)
T PLN03073 175 IKDIHMENFSISVG-------------GRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVE 241 (718)
T ss_pred ceeEEEceEEEEeC-------------CCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEe
Confidence 44699999999975 356999999999999999999999999999999999964 46778887654
Q ss_pred EeC-----Ch-------------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC---------------CCCHHHH
Q 010509 113 KPF-----SN-------------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN---------------SFTEKEK 159 (508)
Q Consensus 113 ~~~-----~~-------------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~---------------~~~~~~~ 159 (508)
+.+ +. ..++.++|++|++.+... ++.++.........+. .......
T Consensus 242 Q~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 320 (718)
T PLN03073 242 QEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTA 320 (718)
T ss_pred ccCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-ccccccccccccccchHHHHHHHHHHHHHHHhcCcchH
Confidence 432 10 012235666665432211 1111110000000000 0000123
Q ss_pred HHHHHHHHHHcCCC-cccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 010509 160 IKCAEAVMTELGLS-ECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGR 238 (508)
Q Consensus 160 ~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~ 238 (508)
.++++++++.+|+. +..++.++ +|||||||||+||++|+.+|++|||||||++||+.+...+.+.|+++ +.
T Consensus 321 ~~r~~~~L~~lgl~~~~~~~~~~-----~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~~ 392 (718)
T PLN03073 321 EARAASILAGLSFTPEMQVKATK-----TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW---PK 392 (718)
T ss_pred HHHHHHHHHHCCCChHHHhCchh-----hCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc---CC
Confidence 45667788888885 44555554 89999999999999999999999999999999999999999999987 68
Q ss_pred EEEEEecCcchHHHhhccEEEEEeCCeEE-EEcChhh
Q 010509 239 TIVMTIHQPSNMLYYMFHKVLLLSEGYPL-YSGEASG 274 (508)
Q Consensus 239 tii~s~H~~~~~~~~~~D~v~lL~~G~iv-~~G~~~~ 274 (508)
|||++|||.. .+...||++++|++|++. |.|+.++
T Consensus 393 tviivsHd~~-~l~~~~d~i~~l~~g~i~~~~g~~~~ 428 (718)
T PLN03073 393 TFIVVSHARE-FLNTVVTDILHLHGQKLVTYKGDYDT 428 (718)
T ss_pred EEEEEECCHH-HHHHhCCEEEEEECCEEEEeCCCHHH
Confidence 9999999975 577889999999999996 7777653
No 364
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=3e-33 Score=335.64 Aligned_cols=191 Identities=28% Similarity=0.423 Sum_probs=154.4
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
++.+|+|+|+++++||+++|+|||||||||||++|+|.++|++|+|.++ +.++|++|++.+++ .|++||+
T Consensus 672 ~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~---------~~i~yv~Q~~~l~~-~Tv~enI 741 (1560)
T PTZ00243 672 PKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE---------RSIAYVPQQAWIMN-ATVRGNI 741 (1560)
T ss_pred CceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC---------CeEEEEeCCCccCC-CcHHHHH
Confidence 4679999999999999999999999999999999999999999999863 46999999998875 6999999
Q ss_pred HHHHHhcCCCCCCHHHHH-----HHHHHHHHHc--CCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 010509 143 VFTALLQLPNSFTEKEKI-----KCAEAVMTEL--GLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPT 215 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPt 215 (508)
.|+.. ...+... ...++.++.+ |+ ++.+| +....||||||||++|||||+.+|++++|||||
T Consensus 742 ~~~~~------~~~~~~~~~~~~~~l~~~l~~l~~g~----~t~i~-~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~ 810 (1560)
T PTZ00243 742 LFFDE------EDAARLADAVRVSQLEADLAQLGGGL----ETEIG-EKGVNLSGGQKARVSLARAVYANRDVYLLDDPL 810 (1560)
T ss_pred HcCCh------hhHHHHHHHHHHhhhHHHHHHhhccc----hHHhc-CCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 98521 1111111 1123334444 33 33444 335689999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHH
Q 010509 216 SGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 216 sgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
++||+.++..+++.+.....+|+|+|++||+++. + ..+|++++|++|++++.|+.++..
T Consensus 811 saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~-~-~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 811 SALDAHVGERVVEECFLGALAGKTRVLATHQVHV-V-PRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHH-H-HhCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999987543222358999999999863 4 579999999999999999988764
No 365
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=1.7e-32 Score=268.00 Aligned_cols=190 Identities=20% Similarity=0.299 Sum_probs=136.7
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHH-HHHhcCCCCcccEEEECC------------EeCCh--hcc-ccEEEE
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLL-TALGGRLGRINGRITYNG------------KPFSN--QMT-RNTGFV 126 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL-~~L~g~~~~~~G~I~~~G------------~~~~~--~~~-~~i~yv 126 (508)
+..+|+||||++++||+++|+||||||||||+ ..+.. +|++.+.+ ....+ ..+ ...++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~-----~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYA-----EGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHH-----HHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 46799999999999999999999999999995 44431 23321110 00000 111 233444
Q ss_pred ecCCC--CCCCCCHHH---HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCHHHHHHHHHHH
Q 010509 127 TQEDV--LSPYLTVTE---TMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSGGERKRVSIGQ 200 (508)
Q Consensus 127 ~Q~~~--l~~~lTv~E---~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~Ia~ 200 (508)
.|++. +.|..+|.. ...+...+. ..+...++ .+.++.+||.+ ..++.+ ++||||||||++||+
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~lar 150 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSA-----PTLSGGEAQRIRLAT 150 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCcc-----CcCCHHHHHHHHHHH
Confidence 44432 344456542 222221111 11122233 46899999976 356554 589999999999999
Q ss_pred HHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEc
Q 010509 201 EILINP--SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSG 270 (508)
Q Consensus 201 aL~~~P--~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G 270 (508)
+|+.+| ++++|||||+|||+.++..+.+.|++++++|.|+|++||+++ .+ ..||++++| ++|+++++|
T Consensus 151 al~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~-~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 151 QIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDED-TI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHH-HH-HhCCEEEEeCCCccccCCEEEecC
Confidence 999998 599999999999999999999999999878999999999986 45 589999999 999999876
No 366
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-33 Score=252.58 Aligned_cols=213 Identities=23% Similarity=0.335 Sum_probs=177.9
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe--
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP-- 114 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~-- 114 (508)
..|.++|+++++...... .-..++++|+||+++.||++++=||||||||||||+|-|.+.|++|+|++.-..
T Consensus 3 ~~l~v~~~~KtFtlH~q~------Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~ 76 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQG------GVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEW 76 (235)
T ss_pred ceeeeecchhheEeeecC------CEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcch
Confidence 358889999887643211 113579999999999999999999999999999999999999999999986432
Q ss_pred CC-----h----h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 010509 115 FS-----N----Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPL 184 (508)
Q Consensus 115 ~~-----~----~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 184 (508)
++ + + .++.+|||.|.-...|.....|.+.-....+ +.+.+..++++.+++..+++.+..-.+.
T Consensus 77 vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~La---- 149 (235)
T COG4778 77 VDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWSLA---- 149 (235)
T ss_pred hhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhcCC----
Confidence 11 1 2 2457999999988888888777776655433 5677888889999999999987654432
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
|...||||||||.|||.++.+-+||+|||||+.||..++..+++++++-+..|..+|=+-||- +.-...+||++-+..
T Consensus 150 PaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDe-evre~vadR~~~~~~ 227 (235)
T COG4778 150 PATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDE-EVREAVADRLLDVSA 227 (235)
T ss_pred CcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccH-HHHHHHhhheeeccc
Confidence 568999999999999999999999999999999999999999999999888899999999994 466789999988764
No 367
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=9.6e-33 Score=247.74 Aligned_cols=133 Identities=44% Similarity=0.714 Sum_probs=120.9
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHHHHH
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
|+|+|+++++||+++|+|+||||||||+++|+|..++.+|+|.++|+++.. ..++.++|++|++.+++.+||+|+
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 789999999999999999999999999999999999999999999999864 457789999999999999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010509 143 VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS 216 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPts 216 (508)
...++++++++.+++.+..++.++. ....||||||||++||++|+.+|++++|||||+
T Consensus 80 ---------------~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ---------------ESDERIEEVLKKLGLEDLLDRKIGQ-RASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ---------------HHHHHHHHHHHHTTHGGGTGSBGTS-CGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ---------------ccccccccccccccccccccccccc-ccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 2234578899999999988888853 347999999999999999999999999999996
No 368
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=4.9e-32 Score=312.66 Aligned_cols=215 Identities=22% Similarity=0.322 Sum_probs=182.4
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
-.++++|++.+|.. +...+|||||++|+|||-+||+|+.|||||||.++|-.+..|.+|+|.+||.++.
T Consensus 1137 G~I~f~~~~~RYrp-----------~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~ 1205 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRP-----------NLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDIS 1205 (1381)
T ss_pred CeEEEEEeEEEeCC-----------CCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecc
Confidence 37999999999862 2357999999999999999999999999999999999999999999999999997
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCC
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLT 185 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~ 185 (508)
+ +.|++++.+||||.+|.. |+|.||.=.. ..++++ +-++||..+|++ ..|+.+. +..
T Consensus 1206 ~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~------e~sD~~----IW~ALe~~~Lk~~v~~~p~~Ld~~v~-egG 1273 (1381)
T KOG0054|consen 1206 KIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFD------EYSDDE----IWEALERCQLKDVVSSLPGGLDSEVS-EGG 1273 (1381)
T ss_pred cccHHHHHhcCeeeCCCCceecC-ccccccCccc------ccCHHH----HHHHHHHhChHHHHhhCCcCCCceec-CCC
Confidence 5 689999999999999986 9999986221 223443 334555555433 3455553 345
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.++|-||||.+++||||+++++||+|||+|++.|+.+-..|.+.+|+-- +++|||.+-|+.+. +.+ +|||+||++|+
T Consensus 1274 ~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F-~dcTVltIAHRl~T-Vmd-~DrVlVld~G~ 1350 (1381)
T KOG0054|consen 1274 ENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEF-KDCTVLTIAHRLNT-VMD-SDRVLVLDAGR 1350 (1381)
T ss_pred ccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHh-cCCeEEEEeeccch-hhh-cCeEEEeeCCe
Confidence 6899999999999999999999999999999999999999999999854 47999999999986 445 69999999999
Q ss_pred EEEEcChhhHHH
Q 010509 266 PLYSGEASGAMN 277 (508)
Q Consensus 266 iv~~G~~~~~~~ 277 (508)
++++|+|.++.+
T Consensus 1351 v~EfdsP~~Ll~ 1362 (1381)
T KOG0054|consen 1351 VVEFDSPAELLS 1362 (1381)
T ss_pred EeecCChHHHHh
Confidence 999999998864
No 369
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=99.98 E-value=1.1e-31 Score=309.92 Aligned_cols=208 Identities=23% Similarity=0.434 Sum_probs=176.2
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|.+++-+.. ...+.|+|||++|++|+++||+||-|||||+||.+|.|..+..+|+|.++|.
T Consensus 517 ~~i~i~~~sfsW~~~----------~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~gs--- 583 (1381)
T KOG0054|consen 517 NAIEIKNGSFSWDSE----------SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNGS--- 583 (1381)
T ss_pred ceEEEeeeeEecCCC----------CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcCe---
Confidence 468889999885421 1344899999999999999999999999999999999999999999999876
Q ss_pred hhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCCccC
Q 010509 117 NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-------KNSLIGGPLTRGVS 189 (508)
Q Consensus 117 ~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~LS 189 (508)
++||+|++.+++. ||+||+.|+... + +++.+++++...|++. -.|.|| +..-+||
T Consensus 584 ------iaYv~Q~pWI~ng-TvreNILFG~~~------d----~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIG-ErGinLS 645 (1381)
T KOG0054|consen 584 ------VAYVPQQPWIQNG-TVRENILFGSPY------D----EERYDKVIKACALKKDLEILPFGDLTEIG-ERGINLS 645 (1381)
T ss_pred ------EEEeccccHhhCC-cHHHhhhcCccc------c----HHHHHHHHHHccCHhHHhhcCCCCcceec-CCccCCc
Confidence 8999999999875 999999997532 2 3455666776666533 356677 4455899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||+++|||+-++++|++||.|.|++|++...++.+..-+..-+++|+|++|||.. ....+|+|++|++|+|+..
T Consensus 646 GGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~--~L~~ad~Iivl~~G~I~~~ 723 (1381)
T KOG0054|consen 646 GGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQ--FLPHADQIIVLKDGKIVES 723 (1381)
T ss_pred HhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchh--hhhhCCEEEEecCCeEecc
Confidence 99999999999999999999999999999999999998777654446899999999974 5577999999999999999
Q ss_pred cChhhHHH
Q 010509 270 GEASGAMN 277 (508)
Q Consensus 270 G~~~~~~~ 277 (508)
|+.+|..+
T Consensus 724 Gty~el~~ 731 (1381)
T KOG0054|consen 724 GTYEELLK 731 (1381)
T ss_pred cCHHHHHh
Confidence 99999873
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=2.5e-31 Score=264.09 Aligned_cols=193 Identities=25% Similarity=0.349 Sum_probs=153.6
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh-----cCC-----CC-----------cccEEEECCEeCChhc---
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG-----GRL-----GR-----------INGRITYNGKPFSNQM--- 119 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~-----g~~-----~~-----------~~G~I~~~G~~~~~~~--- 119 (508)
..-|+|||.+|+.|++++|.|+||||||||++.+. ... .| .+--|.+++.++....
T Consensus 8 ~~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~ 87 (261)
T cd03271 8 ENNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSN 87 (261)
T ss_pred hhcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCc
Confidence 45699999999999999999999999999998552 110 01 1124677776663211
Q ss_pred -----------cc----------------cEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC
Q 010509 120 -----------TR----------------NTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL 172 (508)
Q Consensus 120 -----------~~----------------~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL 172 (508)
|+ .+.|..++...+..+||.|++.|...++ ..+++.++++.+||
T Consensus 88 ~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~~~~L~~vgL 158 (261)
T cd03271 88 PATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARKLQTLCDVGL 158 (261)
T ss_pred HHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHHHHHHHHcCC
Confidence 11 2456666666677899999999876431 12456789999999
Q ss_pred Cc-ccccccCCCCCCccCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 173 SE-CKNSLIGGPLTRGVSGGERKRVSIGQEILIN---PSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 173 ~~-~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~---P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
.+ ..++.+ +.||||||||+.||++|+.+ |++++|||||+|||+.....+.+.|++++++|.|||+++|++.
T Consensus 159 ~~l~l~~~~-----~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 159 GYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred chhhhcCcc-----ccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 87 355544 48999999999999999996 7999999999999999999999999999888999999999986
Q ss_pred hHHHhhccEEEEE------eCCeEEEEcCh
Q 010509 249 NMLYYMFHKVLLL------SEGYPLYSGEA 272 (508)
Q Consensus 249 ~~~~~~~D~v~lL------~~G~iv~~G~~ 272 (508)
.+ +.+|+++.| ++|++++.|++
T Consensus 234 -~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 -VI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred -HH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 34 579999999 89999999974
No 371
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.97 E-value=3.2e-30 Score=272.29 Aligned_cols=214 Identities=23% Similarity=0.407 Sum_probs=181.8
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
++.++++|++.. ..++|+||++++||+++|-|-=|||+|-|+++|.|..++.+|+|.++|+++
T Consensus 261 ~~~l~v~~l~~~-----------------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v 323 (500)
T COG1129 261 EPVLEVRNLSGG-----------------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPV 323 (500)
T ss_pred CcEEEEecCCCC-----------------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEc
Confidence 345777777542 247899999999999999999999999999999998888999999999987
Q ss_pred Ch-----hccccEEEEecCC---CCCCCCCHHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHcCCCc-ccccccCCCC
Q 010509 116 SN-----QMTRNTGFVTQED---VLSPYLTVTETMVFTALLQLPN--SFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPL 184 (508)
Q Consensus 116 ~~-----~~~~~i~yv~Q~~---~l~~~lTv~E~l~~~~~l~~~~--~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~ 184 (508)
.. ..+..++|||.|. .++..++|.+|+.++...+... -.++...++.+++..+.+++.. ..+..++
T Consensus 324 ~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~--- 400 (500)
T COG1129 324 RIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIG--- 400 (500)
T ss_pred cCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhh---
Confidence 42 3566899999874 5889999999998873322211 2455666678899999999963 3445554
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
.||||.||||.||+.|..+|++|||||||.|.|.-++.+|.+++++++++|++||++|.++. ++..+||||++|++|
T Consensus 401 --~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElp-Ell~~~DRIlVm~~G 477 (500)
T COG1129 401 --TLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELP-ELLGLSDRILVMREG 477 (500)
T ss_pred --cCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChH-HHHhhCCEEEEEECC
Confidence 89999999999999999999999999999999999999999999999999999999999986 588999999999999
Q ss_pred eEEEEcCh
Q 010509 265 YPLYSGEA 272 (508)
Q Consensus 265 ~iv~~G~~ 272 (508)
+++..=+.
T Consensus 478 ri~~e~~~ 485 (500)
T COG1129 478 RIVGELDR 485 (500)
T ss_pred EEEEEecc
Confidence 99865443
No 372
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.97 E-value=4.6e-32 Score=246.96 Aligned_cols=196 Identities=29% Similarity=0.487 Sum_probs=171.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHHHH
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYLTVTET 141 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~E~ 141 (508)
-|-.+|+++..||++-++|||||||||||-.++|++ |-+|+|.++|+++.. +..|+-+|..|+..-...|.|..+
T Consensus 14 RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~Y 92 (248)
T COG4138 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHY 92 (248)
T ss_pred cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhh
Confidence 377899999999999999999999999999999997 569999999999853 567788999998776667889998
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhh-----CC--CEEEEeCC
Q 010509 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILI-----NP--SLLFLDEP 214 (508)
Q Consensus 142 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~-----~P--~illLDEP 214 (508)
+... .+.+++...++++.+.++|.+...+.+ .+|||||-|||-+|...+. || ++|+||||
T Consensus 93 L~L~--------qP~~~~a~~i~~i~~~L~l~DKL~Rs~-----~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP 159 (248)
T COG4138 93 LTLH--------QPDKTRTELLNDVAGALALDDKLGRST-----NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEP 159 (248)
T ss_pred hhhc--------CchHHHHHHHHHHHhhhcccchhhhhh-----hhcCcccceeeEEeEEEEEecCCCCccceeEEecCC
Confidence 8653 233566677888999999998887666 4899999999999977654 55 79999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHH
Q 010509 215 TSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 215 tsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
.++||...+..+-..|.++++.|.+||++.||.+- ..+.+|++.+|+.|++...|..+++.
T Consensus 160 ~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNh-TLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 160 MNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNH-TLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred CcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhh-HHHHHHHHHHHhcCeEEeecchhhhc
Confidence 99999999999999999999999999999999984 66889999999999999999998874
No 373
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.97 E-value=3.5e-30 Score=277.73 Aligned_cols=203 Identities=27% Similarity=0.451 Sum_probs=168.6
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
...++++|+++.++. .+.+++++||.+++|+.+||+||||+|||||||+|+|...|.+|+|.+.-.
T Consensus 319 ~~vl~~~~~~~~y~~------------~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-- 384 (530)
T COG0488 319 KLVLEFENVSKGYDG------------GRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-- 384 (530)
T ss_pred CeeEEEeccccccCC------------CceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc--
Confidence 456899999998751 368999999999999999999999999999999999999999999987522
Q ss_pred ChhccccEEEEecCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCccCHHHH
Q 010509 116 SNQMTRNTGFVTQED-VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-KNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGer 193 (508)
-.+||..|+. .+.+..|+.|++.-.. + ... ...+...|..+++... ..+.++ .||||||
T Consensus 385 -----v~igyf~Q~~~~l~~~~t~~d~l~~~~----~-~~~----e~~~r~~L~~f~F~~~~~~~~v~-----~LSGGEk 445 (530)
T COG0488 385 -----VKIGYFDQHRDELDPDKTVLEELSEGF----P-DGD----EQEVRAYLGRFGFTGEDQEKPVG-----VLSGGEK 445 (530)
T ss_pred -----eEEEEEEehhhhcCccCcHHHHHHhhC----c-ccc----HHHHHHHHHHcCCChHHHhCchh-----hcCHhHH
Confidence 2599999986 4457889999886432 1 111 4567889999999743 455554 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE-EEcCh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL-YSGEA 272 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv-~~G~~ 272 (508)
.|+.+|+.++.+|.+|+|||||+.||..+...+.+.|.+. .-|||++|||. ..+...+++++.+.+ ++. +.|..
T Consensus 446 ~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f---~Gtvl~VSHDr-~Fl~~va~~i~~~~~-~~~~~~g~y 520 (530)
T COG0488 446 ARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF---EGTVLLVSHDR-YFLDRVATRIWLVED-KVEEFEGGY 520 (530)
T ss_pred HHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC---CCeEEEEeCCH-HHHHhhcceEEEEcC-ceeEcCCCH
Confidence 9999999999999999999999999999999999999887 35999999996 479999999999998 554 44765
Q ss_pred hhHH
Q 010509 273 SGAM 276 (508)
Q Consensus 273 ~~~~ 276 (508)
++-.
T Consensus 521 ~~y~ 524 (530)
T COG0488 521 EDYL 524 (530)
T ss_pred HHHH
Confidence 5443
No 374
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.97 E-value=8.4e-31 Score=250.85 Aligned_cols=163 Identities=15% Similarity=0.245 Sum_probs=131.5
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc---------ccEEEECCEeCCh-hccccEEEEecCCCCCCCCC
Q 010509 68 KGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI---------NGRITYNGKPFSN-QMTRNTGFVTQEDVLSPYLT 137 (508)
Q Consensus 68 ~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~---------~G~I~~~G~~~~~-~~~~~i~yv~Q~~~l~~~lT 137 (508)
+++++++++| +++|+||||||||||+++|+|+.++. .|++.++|++... ..++.++||+|++..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~---- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGR---- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCc----
Confidence 6889999999 99999999999999999999986443 4578888877533 3356799999998766
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh----hCCCEEEEeC
Q 010509 138 VTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL----INPSLLFLDE 213 (508)
Q Consensus 138 v~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~----~~P~illLDE 213 (508)
|.. . ..++++++++. .+..++.+ +.||||||||++||++|+ .+|++++|||
T Consensus 89 ------~~~------~-----~~~~~~~~l~~---~~~~~~~~-----~~LS~G~kqrl~la~~l~~~~~~~~~illlDE 143 (197)
T cd03278 89 ------YSI------I-----SQGDVSEIIEA---PGKKVQRL-----SLLSGGEKALTALALLFAIFRVRPSPFCVLDE 143 (197)
T ss_pred ------eeE------E-----ehhhHHHHHhC---CCccccch-----hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeC
Confidence 110 0 02356667766 44445544 589999999999999997 4669999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 214 PTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 214 PtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
||+|||+..+..+.+.|+++++ +.|||++||++. .+ +.+|+++.+..
T Consensus 144 P~~~LD~~~~~~l~~~l~~~~~-~~tiIiitH~~~-~~-~~~d~v~~~~~ 190 (197)
T cd03278 144 VDAALDDANVERFARLLKEFSK-ETQFIVITHRKG-TM-EAADRLYGVTM 190 (197)
T ss_pred CcccCCHHHHHHHHHHHHHhcc-CCEEEEEECCHH-HH-hhcceEEEEEe
Confidence 9999999999999999999975 689999999986 34 67999999974
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=9.9e-30 Score=250.48 Aligned_cols=186 Identities=16% Similarity=0.286 Sum_probs=135.8
Q ss_pred cccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC----------------CCCccc--------EEEECCEe--
Q 010509 61 IEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR----------------LGRING--------RITYNGKP-- 114 (508)
Q Consensus 61 ~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~----------------~~~~~G--------~I~~~G~~-- 114 (508)
++++.++++++ |++++|+||||||||||+++|++. +.+.+| +|.+++.+
T Consensus 12 y~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~i~~~~~~~~ 86 (243)
T cd03272 12 YKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVEIIFDNSDNR 86 (243)
T ss_pred cccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEEEEEEcCCCc
Confidence 44577888887 789999999999999999999833 334455 66666532
Q ss_pred --CC-h--hccccEEEEecCCCCCC-CCCHHHHHHHHHHhcCCCCCCHH-HHHHHHHHHHHHcCCCcccccccCCCCCCc
Q 010509 115 --FS-N--QMTRNTGFVTQEDVLSP-YLTVTETMVFTALLQLPNSFTEK-EKIKCAEAVMTELGLSECKNSLIGGPLTRG 187 (508)
Q Consensus 115 --~~-~--~~~~~i~yv~Q~~~l~~-~lTv~E~l~~~~~l~~~~~~~~~-~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 187 (508)
.. . ..++.++|++|+..+++ ..|..|...+.....+....... .... ++.+.+++.+..+..+ +.
T Consensus 87 ~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~qg---~i~~l~~l~~~~~~~~-----~~ 158 (243)
T cd03272 87 FPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYYIVPQG---KINSLTNMKQDEQQEM-----QQ 158 (243)
T ss_pred cCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcEEEEcC---chHHhhhccccccccc-----cc
Confidence 11 1 34667999999887777 46777766665544322110000 0011 2333455554444444 58
Q ss_pred cCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 188 VSGGERKRVSIGQEILI----NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~----~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
||||||||++||++|+. +|+++++||||+|||+.++..+++.|+++++ ++|||+++|++ ++.+++|++++|.
T Consensus 159 lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~-~~~ii~~~h~~--~~~~~~d~i~~l~ 234 (243)
T cd03272 159 LSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD-GAQFITTTFRP--ELLEVADKFYGVK 234 (243)
T ss_pred cCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEecCH--HHHhhCCEEEEEE
Confidence 99999999999999974 5899999999999999999999999999876 78999999985 3668999999986
No 376
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=1.9e-30 Score=251.10 Aligned_cols=180 Identities=13% Similarity=0.153 Sum_probs=138.0
Q ss_pred cccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHH
Q 010509 61 IEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTE 140 (508)
Q Consensus 61 ~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E 140 (508)
++++++++++++ ++++|+||||||||||+++|. .++|.+.....++++++++|+..++|.+|+.|
T Consensus 14 ~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 78 (212)
T cd03274 14 YAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRASKMRQKKLSDLIHNSAGHPNLDSCS 78 (212)
T ss_pred CCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHHHhhhhhHHHHhcCCCCCCCCceEE
Confidence 346789999987 899999999999999999997 22344332222356899999999999999999
Q ss_pred HHHHHHHhcCC-----CCCCHHHHHH--HHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhh----CCCEE
Q 010509 141 TMVFTALLQLP-----NSFTEKEKIK--CAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILI----NPSLL 209 (508)
Q Consensus 141 ~l~~~~~l~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~----~P~il 209 (508)
.+.+....... .+...+.... ..+++++.++|.+..++.++ .+|+|||||++||++++. +|+++
T Consensus 79 ~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~-----~lS~G~~~r~~la~al~~~~~~~p~il 153 (212)
T cd03274 79 VEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNIS-----NLSGGEKTLSSLALVFALHHYKPTPLY 153 (212)
T ss_pred EEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchh-----hcCHHHHHHHHHHHHHHhcccCCCCEE
Confidence 87665432100 0111111111 12566778888877777664 899999999999999974 47999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 210 FLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 210 lLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
++||||+|||+.++..+.+.|+++++ +.|+|++||++ .+.+.||++++|+.
T Consensus 154 ilDEPt~gLD~~~~~~l~~~l~~~~~-~~~~iivs~~~--~~~~~~d~v~~~~~ 204 (212)
T cd03274 154 VMDEIDAALDFRNVSIVANYIKERTK-NAQFIVISLRN--NMFELADRLVGIYK 204 (212)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHcC-CCEEEEEECcH--HHHHhCCEEEEEEe
Confidence 99999999999999999999999864 57888888995 46789999999974
No 377
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=9.4e-29 Score=245.20 Aligned_cols=179 Identities=17% Similarity=0.209 Sum_probs=137.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCCCc-ccEEEECCE-eC-Ch-----hccccEEEEecCC---------CCCCCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRI-NGRITYNGK-PF-SN-----QMTRNTGFVTQED---------VLSPYL 136 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~-~G~I~~~G~-~~-~~-----~~~~~i~yv~Q~~---------~l~~~l 136 (508)
+.+| +++|+||||||||||+++|++.+.+. .|++...|. ++ .. ..+..+++++|++ .+.|.+
T Consensus 23 ~~~~-~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~l 101 (251)
T cd03273 23 FDPQ-FNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEI 101 (251)
T ss_pred CCCC-eEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceE
Confidence 3355 99999999999999999999998765 568888776 32 11 1234799999985 346688
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC--------------------cccccccCCCCCCccCHHHHHHH
Q 010509 137 TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS--------------------ECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 137 Tv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--------------------~~~~~~vg~~~~~~LSGGerqRv 196 (508)
||.+++......+.... .++...+++.++++.+|+. +..++ .+++||||||||+
T Consensus 102 tV~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~-----~~~~lS~G~~qr~ 175 (251)
T cd03273 102 TVTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKE-----SLTELSGGQRSLV 175 (251)
T ss_pred EEEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcc-----cccccCHHHHHHH
Confidence 99988865432111000 1223346788899999986 22233 3468999999999
Q ss_pred HHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 197 SIGQEIL----INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 197 ~Ia~aL~----~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+||++|+ .+|+++++||||+|||+.++..+.+.|++++ +|.|+|++||++ ++.+.+|+++-+.
T Consensus 176 ~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~-~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 176 ALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF-KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc-CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 9999998 5789999999999999999999999999985 489999999994 4667899998876
No 378
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.95 E-value=4.4e-27 Score=244.31 Aligned_cols=221 Identities=23% Similarity=0.374 Sum_probs=189.1
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
.+.|+++||+..-. .+.+.+++|||++++||+++|.|=.|-|-+.|+.+|+|+.++.+|+|.++|+++
T Consensus 255 ~~vL~V~~L~v~~~------------~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v 322 (501)
T COG3845 255 EVVLEVEDLSVKDR------------RGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDV 322 (501)
T ss_pred CeEEEEeeeEeecC------------CCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEec
Confidence 46799999987633 124689999999999999999999999999999999999988889999999996
Q ss_pred ----Ch--hccccEEEEecCC---CCCCCCCHHHHHHHHHHhcCC----CCCCHHHHHHHHHHHHHHcCCCcc-cccccC
Q 010509 116 ----SN--QMTRNTGFVTQED---VLSPYLTVTETMVFTALLQLP----NSFTEKEKIKCAEAVMTELGLSEC-KNSLIG 181 (508)
Q Consensus 116 ----~~--~~~~~i~yv~Q~~---~l~~~lTv~E~l~~~~~l~~~----~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg 181 (508)
+. ..+..++|||+|. .+.+.+|+.||+.+...-+.| .-....+.++.++++++++++... .+..
T Consensus 323 ~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~-- 400 (501)
T COG3845 323 LGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAP-- 400 (501)
T ss_pred cccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcc--
Confidence 22 2345799999986 478899999999876542211 124567778889999999999733 2222
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
.+.||||++||+-+||+|..+|++|++.+||.|||..+...|.+.|.+++++|+.|++++-|++ +++.++|||.+|
T Consensus 401 ---a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLD-Eil~lsDrIaVi 476 (501)
T COG3845 401 ---ARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLD-EILELSDRIAVI 476 (501)
T ss_pred ---hhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHH-HHHHhhheeeee
Confidence 4589999999999999999999999999999999999999999999999999999999999986 689999999999
Q ss_pred eCCeEEEEcChhh
Q 010509 262 SEGYPLYSGEASG 274 (508)
Q Consensus 262 ~~G~iv~~G~~~~ 274 (508)
++|+++...++++
T Consensus 477 ~~Gri~~~~~~~~ 489 (501)
T COG3845 477 YEGRIVGIVPPEE 489 (501)
T ss_pred eCCceeccccccc
Confidence 9999998888765
No 379
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.95 E-value=3.6e-27 Score=228.33 Aligned_cols=178 Identities=17% Similarity=0.193 Sum_probs=127.5
Q ss_pred eceEEEEe-CCeEEEEECCCCCcHHHHHHHHhcCC-CCcccEEEECCE--eCC-hhccccEEEEecCCCCCCCCCHHHHH
Q 010509 68 KGITGMVK-PGEMLAMLGPSGCGKTTLLTALGGRL-GRINGRITYNGK--PFS-NQMTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 68 ~~vs~~v~-~Ge~~ailG~nGsGKSTLL~~L~g~~-~~~~G~I~~~G~--~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
++++|... +|++++|+|||||||||||++|++.+ .+..+....+.. .+. ...+..+++++|++.... ++....
T Consensus 18 ~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~~f~~~~~~~--~~~r~~ 95 (213)
T cd03279 18 QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSFTFQLGGKKY--RVERSR 95 (213)
T ss_pred eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEEEEEECCeEE--EEEEec
Confidence 55666543 58999999999999999999999643 444444443311 111 123456999999864311 121111
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhh----------CCCEEEEe
Q 010509 143 VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILI----------NPSLLFLD 212 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~----------~P~illLD 212 (508)
..+.++..+.+ .++..++.+..++.+ ..||||||||++||++|+. +|++++||
T Consensus 96 ----------gl~~~~~~~~~--~l~~g~l~~~l~~~~-----~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllD 158 (213)
T cd03279 96 ----------GLDYDQFTRIV--LLPQGEFDRFLARPV-----STLSGGETFLASLSLALALSEVLQNRGGARLEALFID 158 (213)
T ss_pred ----------CCCHHHHHHhh--hhhhcchHHHhcCCc-----cccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEe
Confidence 22333222211 234444555555444 4899999999999999985 57899999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 213 EPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 213 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
|||+|||+.++..+.+.|++++++|.|+|++||+++ .+...+|++++|++|.
T Consensus 159 Ep~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~-~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 159 EGFGTLDPEALEAVATALELIRTENRMVGVISHVEE-LKERIPQRLEVIKTPG 210 (213)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH-HHHhhCcEEEEEecCC
Confidence 999999999999999999999877999999999986 5778899999999874
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.95 E-value=1.7e-27 Score=229.28 Aligned_cols=166 Identities=19% Similarity=0.276 Sum_probs=126.8
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHh----cCCCCcccEEEECCEeCCh-hccccEEEEecCC-----CCCCCCCH
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALG----GRLGRINGRITYNGKPFSN-QMTRNTGFVTQED-----VLSPYLTV 138 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~----g~~~~~~G~I~~~G~~~~~-~~~~~i~yv~Q~~-----~l~~~lTv 138 (508)
..++++.+| +++|+|||||||||||++|. |...+.+|.+..+.+.+.. ..+..+++++|++ .....+|+
T Consensus 15 ~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~ 93 (204)
T cd03240 15 RSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAI 93 (204)
T ss_pred ceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhH
Confidence 344567788 99999999999999999995 8877777766522222221 3455799999987 34445688
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH------HHHHHHHhhCCCEEEEe
Q 010509 139 TETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR------VSIGQEILINPSLLFLD 212 (508)
Q Consensus 139 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR------v~Ia~aL~~~P~illLD 212 (508)
.|++.+. .+. .+++.+ ++ .++.||+||||| ++||++++.+|+++++|
T Consensus 94 ~~~~~~~---------~~~----~~~~~~---------~~-----~~~~LS~G~~~~~~la~rlala~al~~~p~illlD 146 (204)
T cd03240 94 LENVIFC---------HQG----ESNWPL---------LD-----MRGRCSGGEKVLASLIIRLALAETFGSNCGILALD 146 (204)
T ss_pred hhceeee---------chH----HHHHHH---------hc-----CccccCccHHHHHHHHHHHHHHHHhccCCCEEEEc
Confidence 8887542 111 122232 32 345899999996 78999999999999999
Q ss_pred CCCCCCCHHHHH-HHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEe-CC
Q 010509 213 EPTSGLDSTIAQ-QILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLS-EG 264 (508)
Q Consensus 213 EPtsgLD~~~~~-~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~-~G 264 (508)
|||++||+.++. .+.+.|++++++ |.|||++||++. ....+|+++.|. +|
T Consensus 147 EP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~--~~~~~d~i~~l~~~~ 199 (204)
T cd03240 147 EPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEE--LVDAADHIYRVEKDG 199 (204)
T ss_pred CCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHH--HHhhCCEEEEEeeCC
Confidence 999999999999 999999999876 899999999975 336799999996 44
No 381
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.95 E-value=1.5e-26 Score=273.78 Aligned_cols=138 Identities=25% Similarity=0.342 Sum_probs=113.6
Q ss_pred CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHh---hCCC
Q 010509 132 LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEIL---INPS 207 (508)
Q Consensus 132 l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~---~~P~ 207 (508)
.+...||.|+|.+...-......+.++..+++ ++++.+||.+. .++.+ .+||||||||++||++|+ .+|+
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~-----~tLSGGE~QRV~LAraL~~~~~~P~ 832 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPL-----SSLSGGEIQRLKLAYELLAPSKKPT 832 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCC
Confidence 45678999999887542211111234455566 48899999875 56655 489999999999999998 6999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe------CCeEEEEcChhhHHH
Q 010509 208 LLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS------EGYPLYSGEASGAMN 277 (508)
Q Consensus 208 illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~------~G~iv~~G~~~~~~~ 277 (508)
+++|||||+|||+.+..++++.|++++++|.|||+++|++. .+ +.+|++++|. +|+++..|+++++..
T Consensus 833 LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~-~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 833 LYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMH-VV-KVADYVLELGPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHHh
Confidence 99999999999999999999999999988999999999986 45 7899999996 789999999987653
No 382
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=99.95 E-value=9.7e-28 Score=242.02 Aligned_cols=204 Identities=23% Similarity=0.288 Sum_probs=166.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+.|.+... .-=+..||+++++||++-|+|.||||||||++.|.|+..|++|+|.+||++++.
T Consensus 322 ~lelrnvrfay~~~------------~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~ 389 (546)
T COG4615 322 TLELRNVRFAYQDN------------AFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSA 389 (546)
T ss_pred ceeeeeeeeccCcc------------cceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCC
Confidence 58999999987622 134789999999999999999999999999999999999999999999999964
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
++|+..+-|+-|-.+|+.+--.|+ ..+ .+.++..++.+.|.+...-.-|+-.+-.||.|||
T Consensus 390 e~ledYR~LfSavFsDyhLF~~ll~~e~-----------~as----~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQk 454 (546)
T COG4615 390 EQLEDYRKLFSAVFSDYHLFDQLLGPEG-----------KAS----PQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQK 454 (546)
T ss_pred CCHHHHHHHHHHHhhhHhhhHhhhCCcc-----------CCC----hHHHHHHHHHHHHhhhhcccCCcccccccccchH
Confidence 567777778888777775321111 012 2346777888877765433333333568999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK-LANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~-l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||+++-.|++-+.+|+++||=-+.-||.-++.+.+.+.- +++.|+||+.+|||- .-|.++||++.|.+|+++..-
T Consensus 455 KRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 455 KRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCceeecc
Confidence 999999999999999999999999999999999887765 566799999999994 478899999999999999764
No 383
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=99.94 E-value=3.4e-26 Score=246.23 Aligned_cols=197 Identities=28% Similarity=0.419 Sum_probs=160.9
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
...++++|++...+. ++..|++.++.+++||-+.|.||||||||||+|+|+|+-+--+|+|.+-
T Consensus 390 ~~~i~~~nl~l~~p~------------~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P---- 453 (604)
T COG4178 390 DHGITLENLSLRTPD------------GQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP---- 453 (604)
T ss_pred cceeEEeeeeEECCC------------CCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC----
Confidence 357999999987652 3589999999999999999999999999999999999998778888653
Q ss_pred ChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC-CCCCCccCHHHHH
Q 010509 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG-GPLTRGVSGGERK 194 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg-~~~~~~LSGGerq 194 (508)
....+-|+||.|.+... |.+|.+.+.... ...+ .+.+.++|.++||.+..++.-+ ++.-+.||+||||
T Consensus 454 ---~~~~~lflpQ~PY~p~G-tLre~l~YP~~~---~~~~----d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQ 522 (604)
T COG4178 454 ---ADSALLFLPQRPYLPQG-TLREALCYPNAA---PDFS----DAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQ 522 (604)
T ss_pred ---CCCceEEecCCCCCCCc-cHHHHHhCCCCC---CCCC----hHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHH
Confidence 12347899999998776 999998875321 1123 3457789999999988766433 1345689999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
|+++||.|+++|++++|||.||+||+.+...+.+.|++-. .+.|||-+.|++. +..+.++.+-+.
T Consensus 523 RlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l-p~~tvISV~Hr~t--l~~~h~~~l~l~ 587 (604)
T COG4178 523 RLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL-PDATVISVGHRPT--LWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC-CCCEEEEeccchh--hHHHHhhheeec
Confidence 9999999999999999999999999999999999998743 3799999999975 556667655554
No 384
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.94 E-value=7.6e-26 Score=257.77 Aligned_cols=125 Identities=26% Similarity=0.400 Sum_probs=107.0
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCHHHHHHHHHHHHHhhCC---CEEEE
Q 010509 136 LTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSGGERKRVSIGQEILINP---SLLFL 211 (508)
Q Consensus 136 lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P---~illL 211 (508)
+||.|++.|...+. + ..+..+.++.+||.+ ..++.+ ..||||||||+.||++|+.+| ++++|
T Consensus 792 ltv~E~l~~f~~~~------~---i~~~l~~L~~vgL~~l~l~~~~-----~tLSgGEkQRl~LAraL~~~p~~~~llIL 857 (943)
T PRK00349 792 MTVEEALEFFEAIP------K---IARKLQTLVDVGLGYIKLGQPA-----TTLSGGEAQRVKLAKELSKRSTGKTLYIL 857 (943)
T ss_pred CcHHHHHHHHHhch------h---hhHHHHHHHHCCCCcccccCCc-----ccCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence 78999998875431 1 123467899999986 355555 489999999999999999999 99999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhhHH
Q 010509 212 DEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGAM 276 (508)
Q Consensus 212 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~ 276 (508)
||||+|||+..+..+++.|+++.++|.|||+++|++. .+ ..+|+++.| ++|++++.|+++++.
T Consensus 858 DEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~-~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 858 DEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLD-VI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred ECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 9999999999999999999999888999999999986 34 579999999 799999999998764
No 385
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.94 E-value=1.6e-26 Score=216.29 Aligned_cols=228 Identities=20% Similarity=0.303 Sum_probs=179.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC----CcccEEEECCE
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG----RINGRITYNGK 113 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~----~~~G~I~~~G~ 113 (508)
.+.++||+..+.... +..+++++||+++..||+-+++|.||||||-..|+|+|..+ .+.-...+++.
T Consensus 3 LLDIrnL~IE~~Tsq---------G~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~i 73 (330)
T COG4170 3 LLDIRNLTIEFKTSQ---------GWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDI 73 (330)
T ss_pred cccccceEEEEecCC---------CceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccc
Confidence 367889999887443 34679999999999999999999999999999999999763 23445566666
Q ss_pred eCC---h-h----ccccEEEEecCCC--CCCCCCHHHHHHHHHHhcCCCC--CC-HHHHHHHHHHHHHHcCCCccccccc
Q 010509 114 PFS---N-Q----MTRNTGFVTQEDV--LSPYLTVTETMVFTALLQLPNS--FT-EKEKIKCAEAVMTELGLSECKNSLI 180 (508)
Q Consensus 114 ~~~---~-~----~~~~i~yv~Q~~~--l~~~lTv~E~l~~~~~l~~~~~--~~-~~~~~~~v~~~l~~lgL~~~~~~~v 180 (508)
++- + + ..+.+++++|++. +-|.-+|...+.-....+..++ .. -.-+++++-++|..+|+.+..|-.
T Consensus 74 dLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM- 152 (330)
T COG4170 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIM- 152 (330)
T ss_pred hhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHH-
Confidence 542 2 2 2346889999985 5555455444432211111010 00 012456778899999999877643
Q ss_pred CCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEE
Q 010509 181 GGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVL 259 (508)
Q Consensus 181 g~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~ 259 (508)
..++.+|--||-|+|.||.|++.+|++|+.||||+.+|+.++.++.++|.++.+ +|+||++++||.. .+.+.||++-
T Consensus 153 -~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~-~is~W~d~i~ 230 (330)
T COG4170 153 -RSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQ-MISQWADKIN 230 (330)
T ss_pred -HhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHH-HHHHHhhheE
Confidence 467889999999999999999999999999999999999999999999999976 5999999999987 5889999999
Q ss_pred EEeCCeEEEEcChhhHHH
Q 010509 260 LLSEGYPLYSGEASGAMN 277 (508)
Q Consensus 260 lL~~G~iv~~G~~~~~~~ 277 (508)
||.-|+-++.++.+++++
T Consensus 231 VlYCGQ~~ESa~~e~l~~ 248 (330)
T COG4170 231 VLYCGQTVESAPSEELVT 248 (330)
T ss_pred EEEecccccccchhHHhc
Confidence 999999999999988764
No 386
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.93 E-value=1.2e-24 Score=247.72 Aligned_cols=125 Identities=26% Similarity=0.396 Sum_probs=104.2
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHhh---CCCEEE
Q 010509 135 YLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEILI---NPSLLF 210 (508)
Q Consensus 135 ~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~---~P~ill 210 (508)
.+||.|.+.|...+. . ..+..++++.+||... .++.+ ++||||||||+.||++|+. +|++++
T Consensus 789 ~~tv~e~~~f~~~~~---~------i~~~l~~L~~~gL~~l~l~~~~-----~tLSgGe~QRl~LA~aL~~~~~~p~llI 854 (924)
T TIGR00630 789 DMTVEEAYEFFEAVP---S------ISRKLQTLCDVGLGYIKLGQPA-----TTLSGGEAQRIKLAKELSKRSTGRTLYI 854 (924)
T ss_pred CCcHHHHHHHHHhcc---c------hhHHHHHHHHcCCCchhhcCcc-----ccCCHHHHHHHHHHHHHhhcCCCCCEEE
Confidence 367778877765431 1 1134578899999753 45544 4899999999999999997 599999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhhH
Q 010509 211 LDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGA 275 (508)
Q Consensus 211 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~ 275 (508)
|||||+|||+..+..+++.|+++.++|.|||+++|++. .+ ..+|+++.| ++|++++.|+++++
T Consensus 855 LDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~-~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 855 LDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLD-VI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999999999999999999888999999999986 45 579999999 79999999998764
No 387
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.93 E-value=8.3e-26 Score=235.96 Aligned_cols=204 Identities=20% Similarity=0.317 Sum_probs=160.6
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+..+.+.|+++.|+. +-.++++++|-+++++.+|++||||+|||||||++.|.+.|+.|.|.-.-+
T Consensus 387 ~pvi~~~nv~F~y~~------------~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-- 452 (614)
T KOG0927|consen 387 PPVIMVQNVSFGYSD------------NPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-- 452 (614)
T ss_pred CCeEEEeccccCCCC------------cchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc--
Confidence 445888888887652 226899999999999999999999999999999999999999999864322
Q ss_pred ChhccccEEEEecC--CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCccCHHH
Q 010509 116 SNQMTRNTGFVTQE--DVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK-NSLIGGPLTRGVSGGE 192 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~--~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSGGe 192 (508)
..+++-.|+ +.+.-..++-|++.-.. +++...+.++.++..+||+... +..+ ++||+||
T Consensus 453 -----~~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~p~-----~~LS~Gq 514 (614)
T KOG0927|consen 453 -----NKLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVVPM-----SQLSDGQ 514 (614)
T ss_pred -----ccchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccccch-----hhccccc
Confidence 234444554 23434567777764321 1123446678899999998544 4444 5999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE-EEEcC
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP-LYSGE 271 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i-v~~G~ 271 (508)
|+||..|+.++..|.+|+|||||+|||..+...+-+.|.+. .-++|+++||.. .+.+.++++.+..+|.+ .+.|+
T Consensus 515 r~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~Ggvv~vSHDfr-lI~qVaeEi~~c~~~~~~~~~G~ 590 (614)
T KOG0927|consen 515 RRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---PGGVVLVSHDFR-LISQVAEEIWVCENGTVTKWDGD 590 (614)
T ss_pred chhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---CCceeeeechhh-HHHHHHHHhHhhccCceeecCcc
Confidence 99999999999999999999999999999999999998876 358999999986 68899999999988765 46776
Q ss_pred hhhH
Q 010509 272 ASGA 275 (508)
Q Consensus 272 ~~~~ 275 (508)
...-
T Consensus 591 i~~y 594 (614)
T KOG0927|consen 591 IEIY 594 (614)
T ss_pred HHHH
Confidence 5533
No 388
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.92 E-value=1.1e-24 Score=208.80 Aligned_cols=169 Identities=20% Similarity=0.209 Sum_probs=123.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-----hccccEEEEecCCCCCCCCCHHHH
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-----QMTRNTGFVTQEDVLSPYLTVTET 141 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~~l~~~lTv~E~ 141 (508)
++++++++.+| +.+|+|||||||||||.+|......... ....|..... .....+.+.+|+..+.++
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~~------ 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDAN------ 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccCC------
Confidence 46788888888 8899999999999999999854322111 0111221111 113457888887665541
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHH----hhCCCEEEEeCCCCC
Q 010509 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEI----LINPSLLFLDEPTSG 217 (508)
Q Consensus 142 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL----~~~P~illLDEPtsg 217 (508)
... ...+++++++++. .+..++.+ ++||+|||||++||+++ +.+|++++|||||+|
T Consensus 84 -----------~~~-~~~~~~~~~~l~~---~~~~~~~~-----~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~g 143 (198)
T cd03276 84 -----------PLC-VLSQDMARSFLTS---NKAAVRDV-----KTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVF 143 (198)
T ss_pred -----------cCC-HHHHHHHHHHhcc---ccccCCcc-----cccChhHHHHHHHHHHHHHhcccCCCEEEecCcccc
Confidence 011 1123567777776 55555555 48999999999999999 589999999999999
Q ss_pred CCHHHHHHHHHHHHHHHcC---CCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 218 LDSTIAQQILSILLKLANG---GRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 218 LD~~~~~~i~~~L~~l~~~---g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
||+.++..+.+.|++++++ +.|||+++|++.. +.+ +|+|.+|..++
T Consensus 144 lD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~-i~~-~d~v~~~~~~~ 192 (198)
T cd03276 144 MDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISG-LAS-SDDVKVFRMKD 192 (198)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccc-ccc-ccceeEEEecC
Confidence 9999999999999998643 4689999999874 555 49999998764
No 389
>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]
Probab=99.92 E-value=7e-25 Score=229.07 Aligned_cols=211 Identities=23% Similarity=0.358 Sum_probs=146.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEE--EECCEeC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRI--TYNGKPF 115 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I--~~~G~~~ 115 (508)
.++++|+++++. ++.+++|+++++.+|+-++|+|+|||||||+|++|+|+..|..-++ +.-.++.
T Consensus 75 dvk~~sls~s~~-------------g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~e~ 141 (614)
T KOG0927|consen 75 DVKIESLSLSFH-------------GVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSREI 141 (614)
T ss_pred cceeeeeeeccC-------------CceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcccC
Confidence 578888888764 5789999999999999999999999999999999999986543333 2222222
Q ss_pred ChhccccEEEEecCCCCCCCCCHHHHHHHHH------------------HhcCCCCCCHHHHHHHHHHHHHHcCC-Cccc
Q 010509 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTA------------------LLQLPNSFTEKEKIKCAEAVMTELGL-SECK 176 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~------------------~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~ 176 (508)
.+...+.+-++.+. .-..+.-+...+ ..|+ ..++.+....++-++|..+|. .+..
T Consensus 142 ~ps~~~av~~v~~~-----~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~-~~~d~~~~~~k~~~il~glgf~~~m~ 215 (614)
T KOG0927|consen 142 EPSEKQAVQAVVME-----TDHERKRLEYLAEDLAQACDDKEKDELDELYERL-DEMDNDTFEAKAAKILHGLGFLSEMQ 215 (614)
T ss_pred CCchHHHHHHHhhh-----hHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHH-HhhCchhHHHHHHHHHHhcCCCHhHH
Confidence 11111111111100 000000000000 0000 112233344556667777765 4556
Q ss_pred ccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhcc
Q 010509 177 NSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFH 256 (508)
Q Consensus 177 ~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D 256 (508)
++.+ .++|||+|+|+++||+|..+|++|+|||||+|||..+..-+-+.|.+..+ .++++++|.- +.+-..|.
T Consensus 216 ~k~~-----~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~--~~lVi~sh~Q-Dfln~vCT 287 (614)
T KOG0927|consen 216 DKKV-----KDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR--IILVIVSHSQ-DFLNGVCT 287 (614)
T ss_pred HHHh-----hccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC--ceEEEEecch-hhhhhHhh
Confidence 6665 48999999999999999999999999999999999999999998887632 2899999985 57889999
Q ss_pred EEEEEeCCe-EEEEcChhhH
Q 010509 257 KVLLLSEGY-PLYSGEASGA 275 (508)
Q Consensus 257 ~v~lL~~G~-iv~~G~~~~~ 275 (508)
+|+-|++++ +.|.|+-+.-
T Consensus 288 ~Ii~l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 288 NIIHLDNKKLIYYEGNYDQY 307 (614)
T ss_pred hhheecccceeeecCCHHHH
Confidence 999999999 6677876643
No 390
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.92 E-value=2.2e-24 Score=221.32 Aligned_cols=174 Identities=22% Similarity=0.333 Sum_probs=143.5
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHH
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFT 145 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~ 145 (508)
-|+-=.+++..||+++++||||-||||+.++|+|.++|++|+ .. .-.++|=||--.--...||++.+.-.
T Consensus 356 ~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~------~~~vSyKPQyI~~~~~gtV~~~l~~~ 425 (591)
T COG1245 356 KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EE------DLKVSYKPQYISPDYDGTVEDLLRSA 425 (591)
T ss_pred EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cc------cceEeecceeecCCCCCcHHHHHHHh
Confidence 355556777888999999999999999999999999999998 11 22488889965444567999988754
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 010509 146 ALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQ 225 (508)
Q Consensus 146 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~ 225 (508)
..-+...+ -...++++-|+|++..++.+. +|||||.|||+||.+|..++++.+||||++-||+..+..
T Consensus 426 ~~~~~~~s-------~~~~ei~~pl~l~~i~e~~v~-----~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~ 493 (591)
T COG1245 426 IRSAFGSS-------YFKTEIVKPLNLEDLLERPVD-----ELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRII 493 (591)
T ss_pred hhhhcccc-------hhHHhhcCccchHHHHhcccc-----cCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHH
Confidence 43221111 123578888999999988875 899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 226 ILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 226 i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+.+.+++..+ +++|.+++-||.. .+-.+.||+++..
T Consensus 494 vakvIRR~~e~~~kta~vVdHDi~-~~dyvsDr~ivF~ 530 (591)
T COG1245 494 VAKVIRRFIENNEKTALVVDHDIY-MIDYVSDRLIVFE 530 (591)
T ss_pred HHHHHHHHHhhcCceEEEEeccee-hhhhhhceEEEEe
Confidence 9999999986 4899999999986 5777889988764
No 391
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.91 E-value=1.8e-24 Score=214.18 Aligned_cols=179 Identities=14% Similarity=0.202 Sum_probs=120.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe-C-Ch---------hccccEEEEecCCCC-CCCCCHHHHH
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP-F-SN---------QMTRNTGFVTQEDVL-SPYLTVTETM 142 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~-~-~~---------~~~~~i~yv~Q~~~l-~~~lTv~E~l 142 (508)
.++ +++|+|||||||||||++|++.+.+..|++..++.+ . .. ...-.+.|..|++.. .-..++.+..
T Consensus 21 ~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~ 99 (247)
T cd03275 21 FDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRIITGGS 99 (247)
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEEEECCc
Confidence 344 999999999999999999999887666777554321 0 00 111123444443221 0011111110
Q ss_pred HHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccc---------cCC--------CCCCccCHHHHHHHHHHHHHhh
Q 010509 143 VFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSL---------IGG--------PLTRGVSGGERKRVSIGQEILI 204 (508)
Q Consensus 143 ~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~---------vg~--------~~~~~LSGGerqRv~Ia~aL~~ 204 (508)
. ..+.. ...+ .+.++++++.+|+....... +.+ ..+..||||||||++||++++.
T Consensus 100 ~---~~~ingk~~s----~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~al~~ 172 (247)
T cd03275 100 S---SYRINGKVVS----LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALALLFAI 172 (247)
T ss_pred e---EEEECCEEec----HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHHHHHH
Confidence 0 00111 1112 23456888889986332111 111 1236899999999999999987
Q ss_pred C----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 205 N----PSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 205 ~----P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
+ |+++++||||+|||+..+..+.+.|++++++|.+||++||+++ +...+|++++|..
T Consensus 173 ~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~--~~~~~d~i~~~~~ 233 (247)
T cd03275 173 HSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEE--FFSKADALVGVYR 233 (247)
T ss_pred hccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHH--HHhhCCeEEEEEe
Confidence 5 8999999999999999999999999999877999999999964 5578999999973
No 392
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=99.89 E-value=1.2e-22 Score=213.82 Aligned_cols=205 Identities=20% Similarity=0.315 Sum_probs=160.6
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
...+++++++...++. +..+++|+|++|++|+-+.|.||||||||+|||+|+|+-+..+|.+.--.+.-
T Consensus 431 Dn~i~~e~v~l~tPt~-----------g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~ 499 (659)
T KOG0060|consen 431 DNAIEFEEVSLSTPTN-----------GDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG 499 (659)
T ss_pred cceEEeeeeeecCCCC-----------CceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC
Confidence 3579999999886521 35688999999999999999999999999999999999988999997644321
Q ss_pred ChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC------CCCCccC
Q 010509 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGG------PLTRGVS 189 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~------~~~~~LS 189 (508)
-+.+-|+||.|...-. |.||.+.+....-.+. ++.-..+++.+.|+.++|.|..++.=|- ..-..||
T Consensus 500 ----~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~~--~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS 572 (659)
T KOG0060|consen 500 ----PKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDMD--SKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLS 572 (659)
T ss_pred ----CCceEEecCCCCcccc-chhheeeccCcccccc--ccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcC
Confidence 1458899999876554 8899888763211111 1112235677788888888776543221 1234699
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
+||+||++.||-+.++|++-+|||-||++|......+.+.++++ |.|.|-+.|..+ +.++-|.++-|+.
T Consensus 573 ~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~---giT~iSVgHRkS--L~kfHd~~L~~~g 641 (659)
T KOG0060|consen 573 PGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM---GITFISVGHRKS--LWKFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc---CCeEEEeccHHH--HHhhhhEEEEecC
Confidence 99999999999999999999999999999999999999888775 899999999986 5565688877774
No 393
>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]
Probab=99.89 E-value=2.4e-22 Score=187.87 Aligned_cols=211 Identities=22% Similarity=0.269 Sum_probs=162.0
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++++.|.|+. ..+++-|+|++++.|.-..++|.||||||||||+|+|..-.-.|.|.++|++.-
T Consensus 12 ~aievsgl~f~y~~------------~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaF 79 (291)
T KOG2355|consen 12 FAIEVSGLQFKYKV------------SDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAF 79 (291)
T ss_pred ceEEEeccEEeccc------------CCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcc
Confidence 36999999999873 347999999999999999999999999999999999976444599999998752
Q ss_pred h---------------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC
Q 010509 117 N---------------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG 181 (508)
Q Consensus 117 ~---------------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg 181 (508)
. ++.+.++.-- +-.+...+++.+.+ |+.. .... +|-+++++.+++.-..
T Consensus 80 hDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~mi-fgV~-----g~dp----~Rre~LI~iLDIdl~W----- 143 (291)
T KOG2355|consen 80 HDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEHMI-FGVG-----GDDP----ERREKLIDILDIDLRW----- 143 (291)
T ss_pred ccccccccCceeEecccccccccccc-cccccccccHHHHH-hhcc-----CCCh----hHhhhhhhheeccceE-----
Confidence 1 1223333222 22334456665544 4321 1112 2345667777665221
Q ss_pred CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEE
Q 010509 182 GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLL 260 (508)
Q Consensus 182 ~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~l 260 (508)
..+.+|-||||||.|++.|++.=++|+|||-|-.||..++..+++.|++-.+ +|.||+..||--.. +.....+++.
T Consensus 144 --RmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDG-Le~Wpthl~y 220 (291)
T KOG2355|consen 144 --RMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDG-LETWPTHLVY 220 (291)
T ss_pred --EEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccc-hhhcchhEEE
Confidence 1247999999999999999999999999999999999999999999999876 59999999998764 6688899999
Q ss_pred EeCCeEEEEcChhhHHHH
Q 010509 261 LSEGYPLYSGEASGAMNY 278 (508)
Q Consensus 261 L~~G~iv~~G~~~~~~~~ 278 (508)
|++|+++-.-+.+++.++
T Consensus 221 i~~Gkl~~~l~~~~i~e~ 238 (291)
T KOG2355|consen 221 IKSGKLVDNLKYQKIKEF 238 (291)
T ss_pred ecCCeeeeccccchhhhh
Confidence 999999986666555544
No 394
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=3.4e-23 Score=215.46 Aligned_cols=203 Identities=21% Similarity=0.299 Sum_probs=142.8
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
-.|...+.+..|+ .+.+|++-++++..|.-++|+|+||+|||||||+|+. |+|.. -++.
T Consensus 79 ~Di~~~~fdLa~G-------------~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~--f~ve 137 (582)
T KOG0062|consen 79 KDIHIDNFDLAYG-------------GKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSG--FHVE 137 (582)
T ss_pred cceeeeeeeeeec-------------chhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCc--cCch
Confidence 4566666666654 5789999999999999999999999999999999997 33322 2222
Q ss_pred hhccccEEEEecC-CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 117 NQMTRNTGFVTQE-DVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 117 ~~~~~~i~yv~Q~-~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
++.+ -.+++-. +.+... |.++.+...- -.+.... +..+...++|..+|.++..... ..++||||-|-|
T Consensus 138 qE~~--g~~t~~~~~~l~~D-~~~~dfl~~e-~~l~~~~---~l~ei~~~~L~glGFt~emq~~----pt~slSGGWrMr 206 (582)
T KOG0062|consen 138 QEVR--GDDTEALQSVLESD-TERLDFLAEE-KELLAGL---TLEEIYDKILAGLGFTPEMQLQ----PTKSLSGGWRMR 206 (582)
T ss_pred hhee--ccchHHHhhhhhcc-HHHHHHHHhh-hhhhccc---hHHHHHHHHHHhCCCCHHHHhc----cccccCcchhhH
Confidence 2222 1222221 122222 3333332211 0011111 2334455589999998654332 235999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE-EEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP-LYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i-v~~G~~~~ 274 (508)
+++||||..+|++|||||||+.||..+..-+-+.|+.+ +.|+|+++|| +..+-..|..|+-+++-++ .|.|+-++
T Consensus 207 laLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~---~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkGN~~~ 282 (582)
T KOG0062|consen 207 LALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW---KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKGNYSQ 282 (582)
T ss_pred HHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC---CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcCcHHH
Confidence 99999999999999999999999999999999999887 3799999999 5578788888888777665 36776554
Q ss_pred H
Q 010509 275 A 275 (508)
Q Consensus 275 ~ 275 (508)
.
T Consensus 283 F 283 (582)
T KOG0062|consen 283 F 283 (582)
T ss_pred H
Confidence 3
No 395
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.87 E-value=2.8e-22 Score=192.25 Aligned_cols=146 Identities=21% Similarity=0.178 Sum_probs=110.1
Q ss_pred eeceEEEEeCCe-EEEEECCCCCcHHHHHHHHh--------cCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCC
Q 010509 67 LKGITGMVKPGE-MLAMLGPSGCGKTTLLTALG--------GRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLT 137 (508)
Q Consensus 67 L~~vs~~v~~Ge-~~ailG~nGsGKSTLL~~L~--------g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lT 137 (508)
..++|+++++|+ +++|.||||||||||||+|+ |..-|... ...++|..|...
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~-------------~~~~~~~~~~~~------ 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAE-------------GSSLPVFENIFA------ 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccc-------------cccCcCccEEEE------
Confidence 458999999994 89999999999999999998 33222110 012334333211
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 010509 138 VTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSG 217 (508)
Q Consensus 138 v~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsg 217 (508)
.++..+..+..+ ..+|+||||++.|+++ +.+|+++++|||++|
T Consensus 78 -------------------------------~lg~~~~l~~~~-----s~fs~g~~~~~~i~~~-~~~p~llllDEp~~g 120 (200)
T cd03280 78 -------------------------------DIGDEQSIEQSL-----STFSSHMKNIARILQH-ADPDSLVLLDELGSG 120 (200)
T ss_pred -------------------------------ecCchhhhhcCc-----chHHHHHHHHHHHHHh-CCCCcEEEEcCCCCC
Confidence 111111111112 3799999999999977 589999999999999
Q ss_pred CCHHHHHHHH-HHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 218 LDSTIAQQIL-SILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 218 LD~~~~~~i~-~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||+..+..+. ..++++.+.|.++|++||+. .+..++|++..|++|++.+.+
T Consensus 121 lD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~--~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 121 TDPVEGAALAIAILEELLERGALVIATTHYG--ELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECCHH--HHHHHHhcCCCeEEEEEEEec
Confidence 9999999996 46888877799999999984 467899999999999999874
No 396
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.87 E-value=1.4e-21 Score=189.27 Aligned_cols=80 Identities=21% Similarity=0.265 Sum_probs=68.3
Q ss_pred CCccCHHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-C-CEEEEEecCcchHHHhhcc--
Q 010509 185 TRGVSGGERKRVSIGQEI----LINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-G-RTIVMTIHQPSNMLYYMFH-- 256 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL----~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g-~tii~s~H~~~~~~~~~~D-- 256 (508)
+.+||||||||+.++.+| +.+|+++++||||+|||+.++..+++.|++++++ | .|+|++||++.. ..+.+|
T Consensus 124 ~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~-~~~~~~~~ 202 (213)
T cd03277 124 PHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLP-GLNYHEKM 202 (213)
T ss_pred hhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhcc-CCcccCce
Confidence 458999999999877554 5799999999999999999999999999999766 5 589999999764 445565
Q ss_pred EEEEEeCCe
Q 010509 257 KVLLLSEGY 265 (508)
Q Consensus 257 ~v~lL~~G~ 265 (508)
++++|++|+
T Consensus 203 ~v~~l~~g~ 211 (213)
T cd03277 203 TVLCVYNGP 211 (213)
T ss_pred EEEEEecCc
Confidence 788888886
No 397
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.1e-21 Score=199.87 Aligned_cols=191 Identities=24% Similarity=0.375 Sum_probs=149.1
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
|..|-++|++|.|+ +.++++++++|-|.-..-+||+||||.||||||++|.|.+.|..|+..-|
T Consensus 584 PPvLGlH~VtFgy~------------gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn---- 647 (807)
T KOG0066|consen 584 PPVLGLHDVTFGYP------------GQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN---- 647 (807)
T ss_pred CCeeecccccccCC------------CCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc----
Confidence 45688888888765 25789999999999999999999999999999999999999999987644
Q ss_pred ChhccccEEEEecCC--CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 116 SNQMTRNTGFVTQED--VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~--~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
.+-+||+..|+. .|-..-|..|.|.-.. .+ +.+ .++..|-.+||...++|.- ++.||||||
T Consensus 648 ---hrL~iG~FdQh~~E~L~~Eetp~EyLqr~F--Nl----pyq----~ARK~LG~fGL~sHAHTik----ikdLSGGQK 710 (807)
T KOG0066|consen 648 ---HRLRIGWFDQHANEALNGEETPVEYLQRKF--NL----PYQ----EARKQLGTFGLASHAHTIK----IKDLSGGQK 710 (807)
T ss_pred ---ceeeeechhhhhHHhhccccCHHHHHHHhc--CC----ChH----HHHHHhhhhhhhhccceEe----eeecCCcch
Confidence 234689888864 3555557777665322 12 222 3456788999998888753 468999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
-||++|.--+..|+||||||||++||..+...+.+.+++. .-.||+++||-+. +.+.-=.+.|+.+
T Consensus 711 aRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney---~GgVi~VsHDeRL-i~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 711 ARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEY---NGGVIMVSHDERL-IVETDCNLWVVEN 776 (807)
T ss_pred HHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhc---cCcEEEEecccce-eeecCceEEEEcc
Confidence 9999998889999999999999999999999999988876 3579999999653 3232224555543
No 398
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.86 E-value=5.2e-22 Score=203.93 Aligned_cols=172 Identities=28% Similarity=0.432 Sum_probs=130.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEE-----------ECCEeCChhcc------ccEEEEecCCCCCC--
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRIT-----------YNGKPFSNQMT------RNTGFVTQEDVLSP-- 134 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~-----------~~G~~~~~~~~------~~i~yv~Q~~~l~~-- 134 (508)
.++|++++|+||||-||||-+|+|+|.+.|.=|+-. +.|..+..-++ -++..=+|--.+.|
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QYVd~iPk~ 176 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQYVDLIPKV 176 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHHHHHHHHH
Confidence 579999999999999999999999999877655431 11111110000 01222233211112
Q ss_pred -CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeC
Q 010509 135 -YLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDE 213 (508)
Q Consensus 135 -~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDE 213 (508)
.-||.|-|.-. +.+-..+++++.++|++..|+.+. +|||||-||++||.+++++.+++++||
T Consensus 177 ~KG~v~elLk~~------------de~g~~devve~l~L~nvl~r~v~-----~LSGGELQr~aIaa~l~rdADvY~FDE 239 (591)
T COG1245 177 VKGKVGELLKKV------------DERGKFDEVVERLGLENVLDRDVS-----ELSGGELQRVAIAAALLRDADVYFFDE 239 (591)
T ss_pred hcchHHHHHHhh------------hhcCcHHHHHHHhcchhhhhhhhh-----hcCchHHHHHHHHHHHhccCCEEEEcC
Confidence 12566655321 111356889999999999998875 899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 214 PTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 214 PtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
|||-||...+....+.+++|++.+++||++.||+. .+-.++|-|.++..
T Consensus 240 psSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLa-vLD~lsD~vhI~YG 288 (591)
T COG1245 240 PSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLA-VLDYLSDFVHILYG 288 (591)
T ss_pred CcccccHHHHHHHHHHHHHHhccCCeEEEEechHH-HHHHhhheeEEEec
Confidence 99999999999999999999988999999999986 57778899888863
No 399
>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=4.5e-21 Score=199.69 Aligned_cols=205 Identities=22% Similarity=0.293 Sum_probs=160.9
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccc-eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEK-AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP 114 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~-~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~ 114 (508)
+..+++.++++.+.. +. +++.+++..++.-+-.+++|+||+||||++|++.|...|..|.+.+++
T Consensus 360 ~p~l~i~~V~f~y~p------------~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-- 425 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTP------------SEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-- 425 (582)
T ss_pred CCeeEEEeeeccCCC------------cchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc--
Confidence 446888888877651 12 689999999999999999999999999999999999999999887753
Q ss_pred CChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCHHHH
Q 010509 115 FSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 115 ~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGer 193 (508)
|.+++|-.|...-+-.+.|.+-- +....+ | +..++ .+++-+..+||+. .+...+ .+||||||
T Consensus 426 -----r~ri~~f~Qhhvd~l~~~v~~vd-~~~~~~-p-G~~~e----e~r~hl~~~Gl~g~la~~si-----~~LSGGQK 488 (582)
T KOG0062|consen 426 -----RLRIKYFAQHHVDFLDKNVNAVD-FMEKSF-P-GKTEE----EIRRHLGSFGLSGELALQSI-----ASLSGGQK 488 (582)
T ss_pred -----cceecchhHhhhhHHHHHhHHHH-HHHHhC-C-CCCHH----HHHHHHHhcCCCchhhhccc-----cccCCcch
Confidence 45689999975433334444432 323332 2 22333 3566788999974 333323 58999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE-EEcCh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL-YSGEA 272 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv-~~G~~ 272 (508)
-||++|.....+|.+|+|||||+.||-.+-..+.+.|+.. +-.||++|||. +.+...|+.+.+.++|++. ..|..
T Consensus 489 srvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F---~GGVv~VSHd~-~fi~~~c~E~Wvve~g~vt~ieg~~ 564 (582)
T KOG0062|consen 489 SRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNF---NGGVVLVSHDE-EFISSLCKELWVVEDGKVTPIEGGI 564 (582)
T ss_pred hHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhc---CCcEEEEECcH-HHHhhcCceeEEEcCCcEEeeeccH
Confidence 9999999999999999999999999999999999998886 35899999996 4799999999999999987 55655
Q ss_pred hhH
Q 010509 273 SGA 275 (508)
Q Consensus 273 ~~~ 275 (508)
++-
T Consensus 565 ~~y 567 (582)
T KOG0062|consen 565 DKY 567 (582)
T ss_pred HHH
Confidence 443
No 400
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.84 E-value=6e-21 Score=183.03 Aligned_cols=147 Identities=18% Similarity=0.179 Sum_probs=109.0
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
+.+++|+++.. |++++|+||||||||||+|+|+|... +...|.++.. ..+++|.+.+++.+|+.|++.
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a-----~~~~~q~~~l~~~~~~~d~l~ 81 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA-----SSFELPPVKIFTSIRVSDDLR 81 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec-----CccCcccceEEEeccchhccc
Confidence 56788887765 79999999999999999999998542 1234554432 136677788999999999997
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIA 223 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~ 223 (508)
++.. ....+. ++++++++.+++ .+|+++++|||++|+|+..+
T Consensus 82 ~~~s------~~~~e~-~~~~~iL~~~~~-------------------------------~~p~llllDEp~~glD~~~~ 123 (199)
T cd03283 82 DGIS------YFYAEL-RRLKEIVEKAKK-------------------------------GEPVLFLLDEIFKGTNSRER 123 (199)
T ss_pred cccC------hHHHHH-HHHHHHHHhccC-------------------------------CCCeEEEEecccCCCCHHHH
Confidence 6431 112232 567777777652 68999999999999999999
Q ss_pred HHHH-HHHHHHHcCCCEEEEEecCcchHHHhh--ccEEEEE
Q 010509 224 QQIL-SILLKLANGGRTIVMTIHQPSNMLYYM--FHKVLLL 261 (508)
Q Consensus 224 ~~i~-~~L~~l~~~g~tii~s~H~~~~~~~~~--~D~v~lL 261 (508)
..+. ..++++.+.|.|+|++||+++. +... .+++-.+
T Consensus 124 ~~l~~~ll~~l~~~~~tiiivTH~~~~-~~~~~~~~~v~~~ 163 (199)
T cd03283 124 QAASAAVLKFLKNKNTIGIISTHDLEL-ADLLDLDSAVRNY 163 (199)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcCcHHH-HHhhhcCCCeEEE
Confidence 8875 4788888779999999999863 4433 3444443
No 401
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.83 E-value=9.9e-21 Score=192.47 Aligned_cols=187 Identities=22% Similarity=0.354 Sum_probs=143.6
Q ss_pred cccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--------CCcccEEEECCEeCChhccccEEEEecCC
Q 010509 59 KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--------GRINGRITYNGKPFSNQMTRNTGFVTQED 130 (508)
Q Consensus 59 ~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--------~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~ 130 (508)
.......+|+|+|++++||++++|+|+|||||||||++|.|.. .|++|.|.+--.. ..+.+|.+.
T Consensus 391 ~r~ieryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-------~~a~iPge~ 463 (593)
T COG2401 391 QRVIERYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-------VSALIPGEY 463 (593)
T ss_pred heeeeeeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-------hhhccCccc
Confidence 3344678999999999999999999999999999999999953 5888888763221 234555543
Q ss_pred C-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEE
Q 010509 131 V-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLL 209 (508)
Q Consensus 131 ~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~il 209 (508)
. -+..-|+.|++.- .+.+ -..+.++|+..||.+---- ....+.||-|||.|+.||.++..+|.++
T Consensus 464 Ep~f~~~tilehl~s-----~tGD------~~~AveILnraGlsDAvly---Rr~f~ELStGQKeR~KLAkllaerpn~~ 529 (593)
T COG2401 464 EPEFGEVTILEHLRS-----KTGD------LNAAVEILNRAGLSDAVLY---RRKFSELSTGQKERAKLAKLLAERPNVL 529 (593)
T ss_pred ccccCchhHHHHHhh-----ccCc------hhHHHHHHHhhccchhhhh---hccHhhcCcchHHHHHHHHHHhcCCCcE
Confidence 2 2234566666531 1111 1235678999999763211 1334689999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhh-ccEEEEEeCCeEE
Q 010509 210 FLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYM-FHKVLLLSEGYPL 267 (508)
Q Consensus 210 lLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~-~D~v~lL~~G~iv 267 (508)
+.||-.+.||+.++..+.+-+.+++++ |.|.+++||.|+ .+..+ =|+++++.-|++.
T Consensus 530 ~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpE-v~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 530 LIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPE-VGNALRPDTLILVGYGKVP 588 (593)
T ss_pred EhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHH-HHhccCCceeEEeeccccc
Confidence 999999999999999999999999865 999999999985 56666 5888888766543
No 402
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.83 E-value=6.5e-20 Score=172.85 Aligned_cols=74 Identities=16% Similarity=0.253 Sum_probs=68.4
Q ss_pred cCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 188 VSGGERKRVSIGQEIL----INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~----~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
||||||||++||++++ .+|+++++|||+++||+..+..+.+.|++++++|.|+|+++|+++ ....+|+++.+.+
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~--~~~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE--MFENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH--HHhhCCeEEEEEE
Confidence 8999999999999996 699999999999999999999999999999877899999999975 3468999999975
No 403
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.82 E-value=2.4e-20 Score=181.84 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=116.5
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEE-EEecCCCCCCCCCHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTG-FVTQEDVLSPYLTVTET 141 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~-yv~Q~~~l~~~lTv~E~ 141 (508)
.+.+.+|++++.++|++++|.||||+||||||++++-. .+..++| |||.+....+
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~-----------------~~la~~g~~vpa~~~~~~------- 71 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI-----------------VLMAQIGCFVPCDSADIP------- 71 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH-----------------HHHHHhCCCcCcccEEEe-------
Confidence 35789999999999999999999999999999999821 1112233 5555432111
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHH--hhCCCEEEEeCC---CC
Q 010509 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEI--LINPSLLFLDEP---TS 216 (508)
Q Consensus 142 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL--~~~P~illLDEP---ts 216 (508)
.++++++.+|+.+.. . +++|.|+++++.+++++ +++|++++|||| |+
T Consensus 72 --------------------~~~~il~~~~l~d~~---~-----~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~ 123 (222)
T cd03285 72 --------------------IVDCILARVGASDSQ---L-----KGVSTFMAEMLETAAILKSATENSLIIIDELGRGTS 123 (222)
T ss_pred --------------------ccceeEeeeccccch---h-----cCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCC
Confidence 123455556665432 1 48999999999999999 899999999999 99
Q ss_pred CCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 217 GLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 217 gLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
+||+.+... ..++.+.+ .|.++|++||+ .++.+++|++..+++|++...++
T Consensus 124 ~lD~~~~~~--~il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 124 TYDGFGLAW--AIAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred hHHHHHHHH--HHHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 999988854 33355543 58999999997 35788999999999999987764
No 404
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.82 E-value=1.5e-19 Score=181.99 Aligned_cols=75 Identities=23% Similarity=0.370 Sum_probs=68.2
Q ss_pred ccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 187 GVSGGERKRVSIGQEILI----NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~----~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
.||||||||+++|++++. +|+++++||||++||+.....+.+.|+++.+ +.|+|++||++. +...+|+++.|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~-~~tii~isH~~~--~~~~~d~~~~l~ 246 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR-SHQVLCITHLPQ--VAAMADNHFLVE 246 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC-CCEEEEEechHH--HHHhcCcEEEEE
Confidence 599999999999987654 9999999999999999999999999999865 789999999986 457899999998
Q ss_pred CC
Q 010509 263 EG 264 (508)
Q Consensus 263 ~G 264 (508)
+|
T Consensus 247 ~~ 248 (276)
T cd03241 247 KE 248 (276)
T ss_pred Ee
Confidence 76
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.81 E-value=6.1e-19 Score=209.57 Aligned_cols=197 Identities=20% Similarity=0.272 Sum_probs=144.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh-cCC--------CCcccEEEECCEeCCh--------------hccc-
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG-GRL--------GRINGRITYNGKPFSN--------------QMTR- 121 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~-g~~--------~~~~G~I~~~G~~~~~--------------~~~~- 121 (508)
=|+||+.+|+-|.+++|.|-||||||||++-.. ..+ ...+--|.++..|+.+ .+|+
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 489999999999999999999999999997433 110 1123346666655521 0000
Q ss_pred ------------------------------cEEEEecCCCCC--------------------------------CCCCHH
Q 010509 122 ------------------------------NTGFVTQEDVLS--------------------------------PYLTVT 139 (508)
Q Consensus 122 ------------------------------~i~yv~Q~~~l~--------------------------------~~lTv~ 139 (508)
.-|++.=+-.+. -.|||.
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv~ 1664 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFYALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPIE 1664 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccCCCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCHH
Confidence 012221111111 236777
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhC---CCEEEEeCCCC
Q 010509 140 ETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILIN---PSLLFLDEPTS 216 (508)
Q Consensus 140 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~---P~illLDEPts 216 (508)
|.+.|+.. ..+..+.-+.|+.+||.... .| +....|||||.||+-+|.+|..+ +.+++|||||+
T Consensus 1665 ea~~~F~~---------~~~i~~~L~~L~~vGLgYl~---LG-q~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~ 1731 (1809)
T PRK00635 1665 EVAETFPF---------LKKIQKPLQALIDNGLGYLP---LG-QNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIAT 1731 (1809)
T ss_pred HHHHHhhc---------cHHHHHHHHHHHHcCCCeee---CC-CcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCC
Confidence 77776531 11234456788999997653 33 33458999999999999999875 78999999999
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhhHHH
Q 010509 217 GLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGAMN 277 (508)
Q Consensus 217 gLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~~ 277 (508)
||++.....+++.|++|.+.|.|||++.|++. +.+.||.++=| +.|+|++.|+|+++.+
T Consensus 1732 GLh~~d~~~Ll~~l~~L~~~g~tvivieH~~~--~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~ 1796 (1809)
T PRK00635 1732 SLDNQQKSALLVQLRTLVSLGHSVIYIDHDPA--LLKQADYLIEMGPGSGKTGGKILFSGPPKDISA 1796 (1809)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHH--HHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhh
Confidence 99999999999999999999999999999985 44669999998 4679999999998865
No 406
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.81 E-value=1e-19 Score=168.81 Aligned_cols=140 Identities=22% Similarity=0.316 Sum_probs=101.2
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHH
Q 010509 68 KGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTAL 147 (508)
Q Consensus 68 ~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~ 147 (508)
...+..+.++.++.|+|||||||||+++++.......+|.+... .+. +.-.++++....+
T Consensus 12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~-~~~-----~~g~~~~~~~~~~-------------- 71 (162)
T cd03227 12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRR-SGV-----KAGCIVAAVSAEL-------------- 71 (162)
T ss_pred eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhcc-Ccc-----cCCCcceeeEEEE--------------
Confidence 44455555667999999999999999999877654333333321 000 0001112111100
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHH
Q 010509 148 LQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILI----NPSLLFLDEPTSGLDSTIA 223 (508)
Q Consensus 148 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~----~P~illLDEPtsgLD~~~~ 223 (508)
.-+. -+||+||+||+++|++|.. +|+++++|||++|+|+...
T Consensus 72 ----------------------------i~~~------~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~ 117 (162)
T cd03227 72 ----------------------------IFTR------LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDG 117 (162)
T ss_pred ----------------------------ehhe------eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHH
Confidence 0000 1499999999999999987 7899999999999999999
Q ss_pred HHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 224 QQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 224 ~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
..+.+.+.++.++|.++|++||++. +...+|+++.|..
T Consensus 118 ~~l~~~l~~~~~~~~~vii~TH~~~--~~~~~d~~~~l~~ 155 (162)
T cd03227 118 QALAEAILEHLVKGAQVIVITHLPE--LAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHHHhcCCEEEEEcCCHH--HHHhhhhEEEEEE
Confidence 9999999998655899999999985 4467899999864
No 407
>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]
Probab=99.80 E-value=1.6e-19 Score=188.16 Aligned_cols=171 Identities=24% Similarity=0.411 Sum_probs=128.0
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
...++..+||.++||..+.|.||||||||+|.|+|+|+-+...|.... + ...++-|+||.|..- .-|.+|.+
T Consensus 494 ~~vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~------P-~~~~mFYIPQRPYms-~gtlRDQI 565 (728)
T KOG0064|consen 494 GDVLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI------P-RPNNIFYIPQRPYMS-GGTLRDQI 565 (728)
T ss_pred cceeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec------C-CCcceEeccCCCccC-cCccccee
Confidence 456889999999999999999999999999999999998765554432 1 134599999987654 33666655
Q ss_pred HHHHH---hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCC----CCCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 010509 143 VFTAL---LQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGP----LTRGVSGGERKRVSIGQEILINPSLLFLDEPT 215 (508)
Q Consensus 143 ~~~~~---l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~----~~~~LSGGerqRv~Ia~aL~~~P~illLDEPt 215 (508)
-+.-. .+ .++.++ +..+.+|+.+.|++...+-.|=. .-.-||||||||+.+||.+-++|+.-+|||-|
T Consensus 566 IYPdS~e~~~-~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm~yHrPkyalLDEcT 640 (728)
T KOG0064|consen 566 IYPDSSEQMK-RKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARMFYHRPKYALLDECT 640 (728)
T ss_pred ecCCcHHHHH-hcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHHHhcCcchhhhhhhh
Confidence 43210 00 011222 23556777777776665443311 12359999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcch
Q 010509 216 SGLDSTIAQQILSILLKLANGGRTIVMTIHQPSN 249 (508)
Q Consensus 216 sgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~ 249 (508)
|+..+.....+.+..++ .|.+.+-+||+|+.
T Consensus 641 sAvsidvE~~i~~~ak~---~gi~llsithrpsl 671 (728)
T KOG0064|consen 641 SAVSIDVEGKIFQAAKD---AGISLLSITHRPSL 671 (728)
T ss_pred cccccchHHHHHHHHHh---cCceEEEeecCccH
Confidence 99999888888887765 48999999999984
No 408
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.5e-18 Score=188.96 Aligned_cols=128 Identities=27% Similarity=0.428 Sum_probs=105.9
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCC---CEEEE
Q 010509 135 YLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINP---SLLFL 211 (508)
Q Consensus 135 ~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P---~illL 211 (508)
.|||.|...|+... + +..+.-+.|..+||.-.. .| .....|||||.|||-+|.+|..+. -+++|
T Consensus 783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi~---LG-QpatTLSGGEaQRvKLA~EL~k~~tg~TlYiL 849 (935)
T COG0178 783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYIK---LG-QPATTLSGGEAQRVKLAKELSKRSTGKTLYIL 849 (935)
T ss_pred hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceEe---cC-CccccccchHHHHHHHHHHHhhccCCCeEEEe
Confidence 47888888876532 1 123445677788987542 34 334589999999999999999877 89999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhhHHH
Q 010509 212 DEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGAMN 277 (508)
Q Consensus 212 DEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~~ 277 (508)
||||+||-.....++++.|.+|.++|.|||++.|.+. +.+.+|.|+=| ..|+|+..|+|+++.+
T Consensus 850 DEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLd--VIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 850 DEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLD--VIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccc--eEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999999999999999999999985 56889999988 4689999999999876
No 409
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.78 E-value=1.4e-18 Score=198.61 Aligned_cols=135 Identities=24% Similarity=0.345 Sum_probs=110.3
Q ss_pred CCCCHHHHHHHHHHhcCCCCCC------HHHHHHHHHHHHHHcCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHhhCC
Q 010509 134 PYLTVTETMVFTALLQLPNSFT------EKEKIKCAEAVMTELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEILINP 206 (508)
Q Consensus 134 ~~lTv~E~l~~~~~l~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P 206 (508)
-.+||.|.+.|...+..+.... -++..++++ .|+.+||.+. .|+.+. +|||||||||.||++|..+|
T Consensus 435 ~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~-----~LSgGE~QRv~LA~aL~~~~ 508 (943)
T PRK00349 435 SELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSGL 508 (943)
T ss_pred hcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchh-----hCCHHHHHHHHHHHHHhhCC
Confidence 4689999998855443221000 013334554 6888999866 677664 89999999999999999997
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhhHH
Q 010509 207 --SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGAM 276 (508)
Q Consensus 207 --~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~ 276 (508)
++++|||||+|||+..+..+++.|++++++|.|||+++|++.. + ..+|+|++| ++|++++.|+++++.
T Consensus 509 ~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~-i-~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~ 584 (943)
T PRK00349 509 TGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDT-I-RAADYIVDIGPGAGVHGGEVVASGTPEEIM 584 (943)
T ss_pred CCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHH-H-HhCCEEEEeccccCCCCCEEeeccCHHHHh
Confidence 9999999999999999999999999998889999999999874 5 469999999 999999999998864
No 410
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.77 E-value=2.1e-18 Score=196.81 Aligned_cols=135 Identities=23% Similarity=0.328 Sum_probs=107.5
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCH------HHHHHHHHHHHHHcCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHhhCC
Q 010509 134 PYLTVTETMVFTALLQLPNSFTE------KEKIKCAEAVMTELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEILINP 206 (508)
Q Consensus 134 ~~lTv~E~l~~~~~l~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P 206 (508)
-.|||.|.+.|...+........ ++..++. +.++.+||... .++.+ .+|||||+|||.||++|+.+|
T Consensus 433 ~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~-----~tLSGGE~QRv~LA~aL~~~~ 506 (924)
T TIGR00630 433 SELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAA-----GTLSGGEAQRIRLATQIGSGL 506 (924)
T ss_pred hcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCc-----CcCCHHHHHHHHHHHHHhhCC
Confidence 36899999888766532210000 1112222 24677888754 45555 499999999999999999986
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhhHH
Q 010509 207 --SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGAM 276 (508)
Q Consensus 207 --~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~ 276 (508)
++++|||||+|||+.....+++.|++++++|.|||+++|++. .+ ..||++++| ++|++++.|+++++.
T Consensus 507 ~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~-~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~ 582 (924)
T TIGR00630 507 TGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEE-TI-RAADYVIDIGPGAGIHGGEVVASGTPEEIL 582 (924)
T ss_pred CCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HH-hhCCEEEEecccccCCCCEEeeccCHHHHh
Confidence 899999999999999999999999999888999999999986 45 489999999 899999999998764
No 411
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.76 E-value=6.7e-19 Score=169.08 Aligned_cols=155 Identities=15% Similarity=0.087 Sum_probs=104.8
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC-CCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHH
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL-GRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTAL 147 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~-~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~ 147 (508)
..++++.+|++++|.|||||||||||++|++.. ....|... . ..+..++|..|. +..++..++
T Consensus 21 ~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~------~-~~~~~i~~~dqi---~~~~~~~d~------ 84 (202)
T cd03243 21 PNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFV------P-AESASIPLVDRI---FTRIGAEDS------ 84 (202)
T ss_pred eeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCc------c-ccccccCCcCEE---EEEecCccc------
Confidence 445556689999999999999999999999542 12222211 0 011123332221 111111111
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 010509 148 LQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL 227 (508)
Q Consensus 148 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~ 227 (508)
.+..+ +.++++++| ++.+.+++.+|+++++||||+|+|+.....+.
T Consensus 85 ----------------------------i~~~~-----s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~ 130 (202)
T cd03243 85 ----------------------------ISDGR-----STFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIA 130 (202)
T ss_pred ----------------------------ccCCc-----eeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHH
Confidence 11111 256666655 66667889999999999999999999988876
Q ss_pred H-HHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 228 S-ILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 228 ~-~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
. +++.+.+.+.++|++||+++ +...+|++..++.|++...++.++.
T Consensus 131 ~~ll~~l~~~~~~vi~~tH~~~--~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 131 YAVLEHLLEKGCRTLFATHFHE--LADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHhcCCeEEEECChHH--HHHHhhcCCCeEEEEEEEEecCCee
Confidence 5 56667767899999999963 5567899999999999988876443
No 412
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=1.8e-17 Score=166.30 Aligned_cols=76 Identities=14% Similarity=0.194 Sum_probs=62.1
Q ss_pred CccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhc-
Q 010509 186 RGVSGGERKRVSIGQEIL---------INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMF- 255 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~---------~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~- 255 (508)
.-+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.|+++. .+ ++++|+.. .+..++
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~-ii~~~~~~-~~~~~~~ 256 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QT-FVTTTDLA-DFDALWL 256 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CE-EEEeCCch-hccchhc
Confidence 458999999999999985 6999999999999999999999999998753 34 45555433 355666
Q ss_pred --cEEEEEeCCeE
Q 010509 256 --HKVLLLSEGYP 266 (508)
Q Consensus 256 --D~v~lL~~G~i 266 (508)
++++-+++|++
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 68999999985
No 413
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=7.1e-19 Score=179.60 Aligned_cols=214 Identities=22% Similarity=0.302 Sum_probs=155.5
Q ss_pred CceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--CCcccEEEECC
Q 010509 35 HPVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRINGRITYNG 112 (508)
Q Consensus 35 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--~~~~G~I~~~G 112 (508)
+.+.|.++|.+.+.. ++.++.|.|+.|-.|.-++++||||-||||||+.|+.+- -|..=+|++..
T Consensus 261 na~DIKiEnF~ISA~-------------Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCE 327 (807)
T KOG0066|consen 261 NAMDIKIENFDISAQ-------------GKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCE 327 (807)
T ss_pred hcccceeeeeeeecc-------------cceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeee
Confidence 356788888877654 577899999999999999999999999999999999974 23334455555
Q ss_pred EeCCh--------hc---cccEEEEecCCC-----CCCCCCHHHHHHHH-HHhcCCCCCCHHHHHHHHHHHHHHcCCCcc
Q 010509 113 KPFSN--------QM---TRNTGFVTQEDV-----LSPYLTVTETMVFT-ALLQLPNSFTEKEKIKCAEAVMTELGLSEC 175 (508)
Q Consensus 113 ~~~~~--------~~---~~~i~yv~Q~~~-----l~~~lTv~E~l~~~-~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~ 175 (508)
+.+-. -. .++...+..++. --...|+.|-+.-. ..+|-. .....+.+++++|.-||.+.-
T Consensus 328 QEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELrai---GA~sAEarARRILAGLGFskE 404 (807)
T KOG0066|consen 328 QEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAI---GADSAEARARRILAGLGFSKE 404 (807)
T ss_pred eeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHh---ccccchhHHHHHHhhcCCChh
Confidence 44310 00 111222211111 12345777766432 334421 122344677889999999765
Q ss_pred cccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhc
Q 010509 176 KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMF 255 (508)
Q Consensus 176 ~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~ 255 (508)
...+. ....|||-|-||++||||...|-+|.|||||+.||.....-+-+.|+.+. +|.++++||-. .+-..|
T Consensus 405 MQ~rP----t~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk---KTLLIVSHDQg-FLD~VC 476 (807)
T KOG0066|consen 405 MQERP----TTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK---KTLLIVSHDQG-FLDSVC 476 (807)
T ss_pred HhcCC----ccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh---heeEEEecccc-hHHHHH
Confidence 44333 24799999999999999999999999999999999999888889998885 69999999975 688899
Q ss_pred cEEEEEeCCeEE-EEcCh
Q 010509 256 HKVLLLSEGYPL-YSGEA 272 (508)
Q Consensus 256 D~v~lL~~G~iv-~~G~~ 272 (508)
..|+-|++-+.- |.|+-
T Consensus 477 tdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 477 TDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred HHHhhhhhhhhhhhcchH
Confidence 999999988775 45654
No 414
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.73 E-value=6.5e-18 Score=162.58 Aligned_cols=137 Identities=19% Similarity=0.169 Sum_probs=100.0
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
++.+.+|+++++++|++++|.||||+||||+++++++.. .+.+.-.|| +...+.+++.|++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~----------------~la~~G~~v---pa~~~~l~~~d~I 75 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA----------------IMAQIGCFV---PAEYATLPIFNRL 75 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH----------------HHHHcCCCc---chhhcCccChhhe
Confidence 467999999999999999999999999999999999863 011111233 3334456666665
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 010509 143 VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTI 222 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~ 222 (508)
... ++..+..++.. +.+|+|++|+ ..+.+++++|+++++|||++|+|+..
T Consensus 76 ~~~------------------------~~~~d~~~~~~-----S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~ 125 (204)
T cd03282 76 LSR------------------------LSNDDSMERNL-----STFASEMSET-AYILDYADGDSLVLIDELGRGTSSAD 125 (204)
T ss_pred eEe------------------------cCCccccchhh-----hHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHH
Confidence 321 12222122222 3789999975 55567899999999999999999987
Q ss_pred HHHH-HHHHHHHHcCCCEEEEEecCcc
Q 010509 223 AQQI-LSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 223 ~~~i-~~~L~~l~~~g~tii~s~H~~~ 248 (508)
...+ ...++.+.+.|.++|++||+.+
T Consensus 126 ~~~l~~~il~~l~~~~~~~i~~TH~~~ 152 (204)
T cd03282 126 GFAISLAILECLIKKESTVFFATHFRD 152 (204)
T ss_pred HHHHHHHHHHHHHhcCCEEEEECChHH
Confidence 6665 4567778777999999999975
No 415
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.68 E-value=1.3e-16 Score=159.58 Aligned_cols=139 Identities=23% Similarity=0.285 Sum_probs=98.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN 152 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~ 152 (508)
.-++|+||||||||||+++|+|.+.+.+|+|.++|+++.. +..+.+++++|++. .+.++|.++..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~~-~~r~~v~~~~~--------- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHDV-GIRTDVLDGCP--------- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhcccccccc-cccccccccch---------
Confidence 5789999999999999999999999999999999998741 34456778888653 34445544311
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 010509 153 SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK 232 (508)
Q Consensus 153 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~ 232 (508)
+. .| ........+|+++++|||++ ...+..+++.
T Consensus 182 ---k~--------------------------------~~-----~~~~i~~~~P~villDE~~~------~e~~~~l~~~ 215 (270)
T TIGR02858 182 ---KA--------------------------------EG-----MMMLIRSMSPDVIVVDEIGR------EEDVEALLEA 215 (270)
T ss_pred ---HH--------------------------------HH-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHHHH
Confidence 00 01 12223336999999999974 2334445555
Q ss_pred HHcCCCEEEEEecCcchH-H-----------HhhccEEEEEeCCeEEEEcChhhH
Q 010509 233 LANGGRTIVMTIHQPSNM-L-----------YYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 233 l~~~g~tii~s~H~~~~~-~-----------~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
+. +|.++|+++|+++.. + ..+|||+++|++|+ ..|+++++
T Consensus 216 ~~-~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 216 LH-AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred Hh-CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 43 699999999986532 1 26689999999887 56666544
No 416
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.67 E-value=2.1e-16 Score=153.46 Aligned_cols=158 Identities=18% Similarity=0.102 Sum_probs=108.2
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC-CCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL-GRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET 141 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~-~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 141 (508)
++.+.+|++++.++ ++++|.||||||||||||++++.. -... |..+.. .+..++++.| +++.+++.|+
T Consensus 17 ~~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~------g~~vp~-~~~~i~~~~~---i~~~~~~~~~ 85 (216)
T cd03284 17 EPFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQI------GSFVPA-SKAEIGVVDR---IFTRIGASDD 85 (216)
T ss_pred CceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhcc------CCeecc-ccceecceee---EeccCCchhh
Confidence 35689999999988 999999999999999999998743 1111 222221 1245677755 4566777666
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH--HHHHHHHHHHHHhhCCCEEEEeCC---CC
Q 010509 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG--GERKRVSIGQEILINPSLLFLDEP---TS 216 (508)
Q Consensus 142 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG--GerqRv~Ia~aL~~~P~illLDEP---ts 216 (508)
+..+ .|. .|+++++-+...+.+|+++++||| |+
T Consensus 86 ls~g------------------------------------------~s~f~~e~~~l~~~l~~~~~~~llllDEp~~gt~ 123 (216)
T cd03284 86 LAGG------------------------------------------RSTFMVEMVETANILNNATERSLVLLDEIGRGTS 123 (216)
T ss_pred hccC------------------------------------------cchHHHHHHHHHHHHHhCCCCeEEEEecCCCCCC
Confidence 5432 111 122333333334579999999999 88
Q ss_pred CCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHH
Q 010509 217 GLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMN 277 (508)
Q Consensus 217 gLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~ 277 (508)
++|.... ...+++.+.+. +.++|++||+. ++.+++|++.-+.+|++...+..++...
T Consensus 124 ~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l~~ 181 (216)
T cd03284 124 TYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGVVF 181 (216)
T ss_pred hHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeEEE
Confidence 8887552 23445555555 89999999995 4667889887788898888777666543
No 417
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.67 E-value=4.6e-16 Score=159.15 Aligned_cols=177 Identities=24% Similarity=0.338 Sum_probs=137.9
Q ss_pred cceeeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHhcCCCCccc-EEEECCEeCChhccccEEEEecCCCCCCCC
Q 010509 63 EKAILKGITGMVKPG-----EMLAMLGPSGCGKTTLLTALGGRLGRING-RITYNGKPFSNQMTRNTGFVTQEDVLSPYL 136 (508)
Q Consensus 63 ~~~iL~~vs~~v~~G-----e~~ailG~nGsGKSTLL~~L~g~~~~~~G-~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~l 136 (508)
.+..+.+..+.|+.| |++..+|.||.||||++++++|+++|++| +|- .-.++|=||.-.-=..-
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p----------~lnVSykpqkispK~~~ 417 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIP----------VLNVSYKPQKISPKREG 417 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCccc----------ccceeccccccCccccc
Confidence 355677888888877 57899999999999999999999988764 331 12467777765444456
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010509 137 TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS 216 (508)
Q Consensus 137 Tv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPts 216 (508)
||++.+.--.+ +.-..-+.+.++++-|.+++..|.-+ .+|||||.|||++|..|=..+++.+.|||.+
T Consensus 418 tvR~ll~~kIr-------~ay~~pqF~~dvmkpL~ie~i~dqev-----q~lSggelQRval~KOGGKpAdvYliDEpsA 485 (592)
T KOG0063|consen 418 TVRQLLHTKIR-------DAYMHPQFVNDVMKPLQIENIIDQEV-----QGLSGGELQRVALALCLGKPADVYLIDEPSA 485 (592)
T ss_pred hHHHHHHHHhH-------hhhcCHHHHHhhhhhhhHHHHHhHHh-----hcCCchhhHHHHHHHhcCCCCceEEecCchh
Confidence 88887653211 11122345778888888888887766 4899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHH-cCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 217 GLDSTIAQQILSILLKLA-NGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 217 gLD~~~~~~i~~~L~~l~-~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
-||+..+...-+.+++.. +.++|-.++.||.- ..-.++||+++..
T Consensus 486 ylDSeQRi~AskvikRfilhakktafvVEhdfI-maTYladrvivf~ 531 (592)
T KOG0063|consen 486 YLDSEQRIIASKVIKRFILHAKKTAFVVEHDFI-MATYLADRVIVFE 531 (592)
T ss_pred hcChHHHHHHHHHHHHHHHhccchhhhhhhHHH-HHHhhcceeEEEe
Confidence 999999999999999864 56789999999975 3446889987754
No 418
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.57 E-value=1.3e-15 Score=144.44 Aligned_cols=78 Identities=17% Similarity=0.072 Sum_probs=56.8
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL-SILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~-~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
.+|+|++|...+.. .+.+|+++++|||++|+|+.....+. .+++.+.++ +.++|++||+++ +.+++|+.--+.++
T Consensus 61 ~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~--l~~~~~~~~~v~~~ 137 (185)
T smart00534 61 TFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE--LTKLADEHPGVRNL 137 (185)
T ss_pred HHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH--HHHHhhcCccceEE
Confidence 68888776444332 34599999999999999999888865 556777764 899999999973 66777753333444
Q ss_pred eEE
Q 010509 265 YPL 267 (508)
Q Consensus 265 ~iv 267 (508)
+..
T Consensus 138 ~~~ 140 (185)
T smart00534 138 HMS 140 (185)
T ss_pred EEE
Confidence 443
No 419
>PRK00064 recF recombination protein F; Reviewed
Probab=99.56 E-value=2.1e-13 Score=142.40 Aligned_cols=78 Identities=22% Similarity=0.296 Sum_probs=65.7
Q ss_pred CCccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhc
Q 010509 185 TRGVSGGERKRVSIGQEIL---------INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMF 255 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~---------~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~ 255 (508)
...+|+||+|++.+|+.|+ .+|+|++||||+++||+..+..+++.+.++ +..+++|+|++.. +...+
T Consensus 271 ~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~---~~qv~it~~~~~~-~~~~~ 346 (361)
T PRK00064 271 ADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL---GAQVFITTTDLED-LADLL 346 (361)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc---CCEEEEEcCChhh-hhhhh
Confidence 3578999999999999886 699999999999999999999999998764 4578999998753 44443
Q ss_pred --cEEEEEeCCeE
Q 010509 256 --HKVLLLSEGYP 266 (508)
Q Consensus 256 --D~v~lL~~G~i 266 (508)
+++..+++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 57899999986
No 420
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.52 E-value=6.9e-14 Score=135.62 Aligned_cols=132 Identities=16% Similarity=0.149 Sum_probs=89.2
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC-CCcccEEEECCEeCChhccccEEEEecCCCCCC-CCCHHHHH
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL-GRINGRITYNGKPFSNQMTRNTGFVTQEDVLSP-YLTVTETM 142 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~-~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~-~lTv~E~l 142 (508)
.+=+|+++.=..+..++|.||||+|||||||.++... -+..|...... .-.++|..|....+. ..++.+
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~-------~~~~~~~d~i~~~l~~~~si~~-- 87 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPAD-------SATIGLVDKIFTRMSSRESVSS-- 87 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcC-------CcEEeeeeeeeeeeCCccChhh--
Confidence 3445555542223899999999999999999998421 13455544321 123677777532111 111111
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010509 143 VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS--GGERKRVSIGQEILINPSLLFLDEPTSGLDS 220 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--GGerqRv~Ia~aL~~~P~illLDEPtsgLD~ 220 (508)
++| .-|-||++++++++.+|+++++|||++|+|+
T Consensus 88 --------------------------------------------~~S~f~~el~~l~~~l~~~~~~slvllDE~~~gtd~ 123 (213)
T cd03281 88 --------------------------------------------GQSAFMIDLYQVSKALRLATRRSLVLIDEFGKGTDT 123 (213)
T ss_pred --------------------------------------------ccchHHHHHHHHHHHHHhCCCCcEEEeccccCCCCH
Confidence 222 3467999999999999999999999999999
Q ss_pred HHHHHH-HHHHHHHHcC---CCEEEEEecCcch
Q 010509 221 TIAQQI-LSILLKLANG---GRTIVMTIHQPSN 249 (508)
Q Consensus 221 ~~~~~i-~~~L~~l~~~---g~tii~s~H~~~~ 249 (508)
.....+ ...++++.+. +.++|++||+++.
T Consensus 124 ~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l 156 (213)
T cd03281 124 EDGAGLLIATIEHLLKRGPECPRVIVSTHFHEL 156 (213)
T ss_pred HHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHH
Confidence 865555 5688888754 3589999999763
No 421
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.51 E-value=9.3e-15 Score=141.78 Aligned_cols=88 Identities=25% Similarity=0.409 Sum_probs=65.2
Q ss_pred HHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC
Q 010509 161 KCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL----INPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236 (508)
Q Consensus 161 ~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~----~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~ 236 (508)
+.+.+.++..++... .+|||||.+++||--|+ .+.++++||||.++||...+..+.+.|+++.+
T Consensus 121 ~~~~~~l~~~~i~~~-----------~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~- 188 (220)
T PF02463_consen 121 KDLEELLPEVGISPE-----------FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK- 188 (220)
T ss_dssp HHHHHHHHCTTTTTT-----------GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT-
T ss_pred ccccccccccccccc-----------ccccccccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 345556666555432 69999999999997764 46799999999999999999999999999875
Q ss_pred CCEEEEEecCcchHHHhhccEEEEEe
Q 010509 237 GRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 237 g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+.-+|++||++ ..+..+|+.+.+.
T Consensus 189 ~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 189 QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred ccccccccccc--ccccccccccccc
Confidence 47799999996 4778889887764
No 422
>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]
Probab=99.49 E-value=5.4e-14 Score=144.15 Aligned_cols=188 Identities=25% Similarity=0.320 Sum_probs=131.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh---hccc--cEEE-------------EecCCCCCCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN---QMTR--NTGF-------------VTQEDVLSPY 135 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~---~~~~--~i~y-------------v~Q~~~l~~~ 135 (508)
-+||++.+++|-||-||||-|++++|..+|.-|.-. ++-+... .+|. .-+| =||.-..+|.
T Consensus 97 prpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyvd~ipr 175 (592)
T KOG0063|consen 97 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NPPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYVDQIPR 175 (592)
T ss_pred CCcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CCcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHHHHHHH
Confidence 368999999999999999999999999876654321 1111110 0000 0001 0111111110
Q ss_pred ---CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 010509 136 ---LTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLD 212 (508)
Q Consensus 136 ---lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLD 212 (508)
.+|.+++. +...++..+++++.+.|.+..++-+. .|||||-||.+||.+-+.+.++..+|
T Consensus 176 ~~k~~v~~~l~------------~~~~r~~~~~~~~~~~L~~~~~re~~-----~lsggelqrfaia~~~vq~advyMFD 238 (592)
T KOG0063|consen 176 AVKGTVGSLLD------------RKDERDNKEEVCDQLDLNNLLDREVE-----QLSGGELQRFAIAMVCVQKADVYMFD 238 (592)
T ss_pred HHHHHHHHHHH------------HHhhcccHHHHHHHHHHhhHHHhhhh-----hcccchhhhhhhhhhhhhhcceeEec
Confidence 12222221 22223356778888889888887775 89999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC-----CeEEEEcChhhHHHHHH
Q 010509 213 EPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE-----GYPLYSGEASGAMNYFA 280 (508)
Q Consensus 213 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~-----G~iv~~G~~~~~~~~f~ 280 (508)
||.+-||...+..-...++.+....+=||++.||++ .+..+.|-+..|.. |-+..--+..+..+-|-
T Consensus 239 EpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLs-VLDylSDFiCcLYGvp~aYGVVT~Pfsvr~giniFl 310 (592)
T KOG0063|consen 239 EPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLS-VLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIFL 310 (592)
T ss_pred CCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeech-HHHhhhcceeEEecCCccceEEEeccchhhhhhhhh
Confidence 999999999999999999999988899999999987 56678899988863 33333334455555443
No 423
>PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane
Probab=99.49 E-value=2.3e-15 Score=142.92 Aligned_cols=132 Identities=31% Similarity=0.585 Sum_probs=126.4
Q ss_pred hhhhhhhhhcCCCCcChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 010509 314 LEQKMLEKEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLAIGAM 393 (508)
Q Consensus 314 ~er~v~~rE~~~~~Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~ 393 (508)
.|+..+.||+.++.|++.+|.+|+.+.+++..++.++++.++.|++.|++.+ +|+.+++.+++..+++.++|.+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~ 154 (210)
T PF01061_consen 77 RERGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAAL 154 (210)
T ss_pred hhccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccc
Confidence 6899999999999999999999999999999999999999999999999888 77888889999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHh
Q 010509 394 VMEQKSATILGSIIMQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQY 447 (508)
Q Consensus 394 ~~~~~~a~~~~~~~~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef 447 (508)
+++...+..+++++..++++++|.+.| .+|+|++|+.|+||++|+.|++..++|
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 155 FPSFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999998 899999999999999999999999886
No 424
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.49 E-value=6.3e-14 Score=158.54 Aligned_cols=131 Identities=24% Similarity=0.252 Sum_probs=92.6
Q ss_pred ceEEEEeCC-eEEEEECCCCCcHHHHHHHHhcC-CCCcccEEEECCEeCChhccccEEEEecCCC-CCCCCCHHHHHHHH
Q 010509 69 GITGMVKPG-EMLAMLGPSGCGKTTLLTALGGR-LGRINGRITYNGKPFSNQMTRNTGFVTQEDV-LSPYLTVTETMVFT 145 (508)
Q Consensus 69 ~vs~~v~~G-e~~ailG~nGsGKSTLL~~L~g~-~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~ 145 (508)
.+|+.+.+| ++++|.||||+|||||||+++|. +.+..| .+||.... .++ +.+.+.
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G-----------------~~Vpa~~~~~~~---~~d~i~-- 370 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG-----------------IPIPANEHSEIP---YFEEIF-- 370 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC-----------------CCccCCcccccc---chhhee--
Confidence 378888887 99999999999999999999986 233333 13333221 111 111110
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 010509 146 ALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQ 225 (508)
Q Consensus 146 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~ 225 (508)
. ....++ .+ .+ ..+.+|+|+++++.|++.+ .+|+++++|||++|+|+.....
T Consensus 371 ~------~i~~~~---si---~~---------------~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~a 422 (771)
T TIGR01069 371 A------DIGDEQ---SI---EQ---------------NLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSA 422 (771)
T ss_pred e------ecChHh---HH---hh---------------hhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHH
Confidence 0 000100 01 00 1237999999999998876 8999999999999999999999
Q ss_pred H-HHHHHHHHcCCCEEEEEecCcch
Q 010509 226 I-LSILLKLANGGRTIVMTIHQPSN 249 (508)
Q Consensus 226 i-~~~L~~l~~~g~tii~s~H~~~~ 249 (508)
+ ..+|+.+.+.|.++|++||+...
T Consensus 423 la~aiLe~l~~~g~~viitTH~~eL 447 (771)
T TIGR01069 423 LAISILEYLLKQNAQVLITTHYKEL 447 (771)
T ss_pred HHHHHHHHHHhcCCEEEEECChHHH
Confidence 9 57888888889999999999754
No 425
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.48 E-value=5.1e-14 Score=121.06 Aligned_cols=73 Identities=18% Similarity=0.108 Sum_probs=61.7
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYLTVT 139 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~ 139 (508)
+.+|+++++++++||+++|+||||||||||++++. +|++.++|.++.. ..++.++|++|+ +++ -|++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~-~ti~ 72 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLE-IRLR 72 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cch-hhHH
Confidence 46899999999999999999999999999999986 7999999998743 345567788777 443 4999
Q ss_pred HHHHHH
Q 010509 140 ETMVFT 145 (508)
Q Consensus 140 E~l~~~ 145 (508)
|||.+.
T Consensus 73 ~Ni~~~ 78 (107)
T cd00820 73 LNIFLI 78 (107)
T ss_pred hhceee
Confidence 999873
No 426
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.45 E-value=6.8e-13 Score=129.32 Aligned_cols=133 Identities=17% Similarity=0.154 Sum_probs=90.6
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhc-CCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGG-RLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g-~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
+.+.+|+++.+++|++++|.||||+||||+++++++ .+.+..|...... . -.++|..|- +..+...|++
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~------~~~~~~~~i---~~~~~~~d~~ 87 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S------ATLSIFDSV---LTRMGASDSI 87 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c------eEEeccceE---EEEecCcccc
Confidence 578999999999999999999999999999999999 4466677654331 1 113333221 1111111111
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010509 143 VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS--GGERKRVSIGQEILINPSLLFLDEPTSGLDS 220 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS--GGerqRv~Ia~aL~~~P~illLDEPtsgLD~ 220 (508)
. .++| ..|-+|++-...-+++|+++|+|||.+|.|+
T Consensus 88 ~------------------------------------------~~~StF~~e~~~~~~il~~~~~~sLvllDE~~~gT~~ 125 (222)
T cd03287 88 Q------------------------------------------HGMSTFMVELSETSHILSNCTSRSLVILDELGRGTST 125 (222)
T ss_pred c------------------------------------------cccchHHHHHHHHHHHHHhCCCCeEEEEccCCCCCCh
Confidence 0 0122 2234444444455678999999999999997
Q ss_pred HHHHHH-HHHHHHHHcC-CCEEEEEecCcc
Q 010509 221 TIAQQI-LSILLKLANG-GRTIVMTIHQPS 248 (508)
Q Consensus 221 ~~~~~i-~~~L~~l~~~-g~tii~s~H~~~ 248 (508)
.....+ ..+++.+.+. +.++|++||+++
T Consensus 126 ~d~~~i~~~il~~l~~~~~~~~i~~TH~~~ 155 (222)
T cd03287 126 HDGIAIAYATLHYLLEEKKCLVLFVTHYPS 155 (222)
T ss_pred hhHHHHHHHHHHHHHhccCCeEEEEcccHH
Confidence 777775 5677777765 899999999976
No 427
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.43 E-value=2e-12 Score=137.35 Aligned_cols=171 Identities=18% Similarity=0.235 Sum_probs=115.3
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC---Ch---------hccccEEEEecCCC
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF---SN---------QMTRNTGFVTQEDV 131 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~---~~---------~~~~~i~yv~Q~~~ 131 (508)
..+++++ +.+.+|+.++|+|+||+|||||+++|+|...++.|.|.+.|++- .+ .+++.+.++.+.+.
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 5689999 99999999999999999999999999999999999999966543 21 24567888987544
Q ss_pred CCCCCCHHHHH--HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH-HHHHHHHHHHHHhhCCCE
Q 010509 132 LSPYLTVTETM--VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG-GERKRVSIGQEILINPSL 208 (508)
Q Consensus 132 l~~~lTv~E~l--~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG-GerqRv~Ia~aL~~~P~i 208 (508)
- +.+-. .+.+ .. +.|.+..-|-. .++- .-+++- -|-+ |++.
T Consensus 225 ~-----~~~r~~~~~~a-------------~~-iAEyfr~~g~~----Vll~---~Dsltr~A~A~-----rEis----- 268 (438)
T PRK07721 225 P-----ALMRIKGAYTA-------------TA-IAEYFRDQGLN----VMLM---MDSVTRVAMAQ-----REIG----- 268 (438)
T ss_pred C-----HHHHHHHHHHH-------------HH-HHHHHHHCCCc----EEEE---EeChHHHHHHH-----HHHH-----
Confidence 1 11111 1111 01 11122222211 1100 001110 0111 1111
Q ss_pred EEEeCC--CCCCCHHHHHHHHHHHHHHHc--CCC-----EEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 209 LFLDEP--TSGLDSTIAQQILSILLKLAN--GGR-----TIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 209 llLDEP--tsgLD~~~~~~i~~~L~~l~~--~g~-----tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
+.+.|| |+|+|+.....+.++++++.+ +|. ||++.+||+++ ..+|++..+.+|+++.+++..+
T Consensus 269 l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e---~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 269 LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE---PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc---hhhhhEEEecCEEEEEeccHHH
Confidence 123464 679999999999999999974 575 99999999974 6799999999999999998754
No 428
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.42 E-value=2.4e-13 Score=131.38 Aligned_cols=45 Identities=22% Similarity=0.331 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHHHc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPT-----SGLDSTIAQQILSILLKLAN 235 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPt-----sgLD~~~~~~i~~~L~~l~~ 235 (508)
-|++++.||++++.+|+++++|||| +|||+.++.++.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999974
No 429
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.37 E-value=1.2e-12 Score=144.48 Aligned_cols=77 Identities=22% Similarity=0.328 Sum_probs=69.9
Q ss_pred CccCHHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 186 RGVSGGERKRVSIGQEILIN----PSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~----P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
+.+||||+||++||++++.. |+++++||||+|||+.++..+.+.|+++++ +++||++||+|. ....+|++++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~-~~~vi~iTH~~~--~~~~ad~~~~l 515 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE-RHQVLCVTHLPQ--VAAHADAHFKV 515 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEEChHH--HHHhcCeEEEE
Confidence 57899999999999999985 699999999999999999999999999975 899999999985 33689999999
Q ss_pred eCCe
Q 010509 262 SEGY 265 (508)
Q Consensus 262 ~~G~ 265 (508)
++|.
T Consensus 516 ~k~~ 519 (563)
T TIGR00634 516 EKEG 519 (563)
T ss_pred EEcc
Confidence 8763
No 430
>TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain. This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=99.36 E-value=2.1e-11 Score=117.20 Aligned_cols=148 Identities=14% Similarity=0.090 Sum_probs=121.1
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010509 329 RLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLAIGAMVMEQKSATILGSIIM 408 (508)
Q Consensus 329 ~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~~ 408 (508)
+.+.++++|.+..++..++.++++..+.|++.|++.. .++.+++.+++..++..++|.++++++++...+ ++.+.+
T Consensus 58 ~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~--~~~~~~ 133 (208)
T TIGR03062 58 RSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRF--LALVLL 133 (208)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHH--HHHHHH
Confidence 4456799999999999999999999999999999864 577788888889999999999999999876543 444555
Q ss_pred HHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCCCCccccCCcccceeeCCCcchhHHHHHH
Q 010509 409 QLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDSGGLCLVGEHPTIKKVGLHRKYYSVIALA 486 (508)
Q Consensus 409 ~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~~il~ 486 (508)
.+.++++|.+.| .+|.|++|+.|++|++|+.+++-...+++. ....|.++++++
T Consensus 134 ~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~------------------------~~~~~~~~~~L~ 189 (208)
T TIGR03062 134 VLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN------------------------DGTLWQAVAVLL 189 (208)
T ss_pred HHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc------------------------HHHHHHHHHHHH
Confidence 667777888888 999999999999999999999977766531 013577889999
Q ss_pred HHHHHHHHHHHHHHHhhc
Q 010509 487 IMLVGYRLIAYIALMRIG 504 (508)
Q Consensus 487 ~~~~~~~~~~~~~l~~~~ 504 (508)
++.+++.++++...|+.|
T Consensus 190 ~~~~v~~~la~~~~~~~~ 207 (208)
T TIGR03062 190 LILVVFLALSLLSARRKR 207 (208)
T ss_pred HHHHHHHHHHHHHHhhhc
Confidence 999988888888776533
No 431
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.34 E-value=1.4e-12 Score=148.15 Aligned_cols=81 Identities=22% Similarity=0.243 Sum_probs=64.6
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS-ILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~-~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
..+|+|++|++.|++++ ++|+++++|||++|+|+.....+.. ++..+.+.|.++|++||++. .....+|+..++ ++
T Consensus 389 StfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~e-l~~~~~~~~~v~-~~ 465 (782)
T PRK00409 389 STFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKE-LKALMYNREGVE-NA 465 (782)
T ss_pred hHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHH-HHHHHhcCCCeE-EE
Confidence 37999999999999988 8999999999999999999998864 67777777999999999965 343445554443 45
Q ss_pred eEEEE
Q 010509 265 YPLYS 269 (508)
Q Consensus 265 ~iv~~ 269 (508)
.+.++
T Consensus 466 ~~~~d 470 (782)
T PRK00409 466 SVEFD 470 (782)
T ss_pred EEEEe
Confidence 55543
No 432
>PRK10869 recombination and repair protein; Provisional
Probab=99.33 E-value=3.4e-12 Score=140.08 Aligned_cols=76 Identities=21% Similarity=0.379 Sum_probs=69.3
Q ss_pred CccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 186 RGVSGGERKRVSIGQEILI----NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~----~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
+.+||||+||++||++++. +|+++++|||++|||..++..+.+.|+++++ +.+||++||+|. +..++|+.+++
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~-~~qvi~iTH~~~--~~~~ad~~~~v 505 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE-STQVMCVTHLPQ--VAGCGHQHFFV 505 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHH--HHHhCCEEEEE
Confidence 4589999999999999997 5899999999999999999999999999975 699999999985 44799999999
Q ss_pred eCC
Q 010509 262 SEG 264 (508)
Q Consensus 262 ~~G 264 (508)
+++
T Consensus 506 ~k~ 508 (553)
T PRK10869 506 SKE 508 (553)
T ss_pred ecc
Confidence 874
No 433
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.33 E-value=4.4e-12 Score=125.66 Aligned_cols=176 Identities=16% Similarity=0.184 Sum_probs=104.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCccc--EEEE--CCEe-CCh-hccc---cEEEEecCCCCCCCCCH---H
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING--RITY--NGKP-FSN-QMTR---NTGFVTQEDVLSPYLTV---T 139 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G--~I~~--~G~~-~~~-~~~~---~i~yv~Q~~~l~~~lTv---~ 139 (508)
..+.+||.++|+||+|+|||||++.|++......+ .+.+ -|.+ .+. ++.+ .+-.+.+-+. .+...+ +
T Consensus 11 ~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~-~~~~~~~~~~ 89 (249)
T cd01128 11 APIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDE-PPERHVQVAE 89 (249)
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCC-CHHHHHHHHH
Confidence 46789999999999999999999999998754332 2222 2221 111 1111 1222333222 111000 0
Q ss_pred HHHHHHHHhcC-CCC----CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH--------HHHHHHHHHHhhCC
Q 010509 140 ETMVFTALLQL-PNS----FTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE--------RKRVSIGQEILINP 206 (508)
Q Consensus 140 E~l~~~~~l~~-~~~----~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe--------rqRv~Ia~aL~~~P 206 (508)
.-+..+...+. .+. +++- .+..+.. ++..+ ...+.+|||+ +||+++|+++..++
T Consensus 90 ~~~~~a~~~~~~G~~vll~iDei---~r~a~a~---------~ev~~-~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~g 156 (249)
T cd01128 90 MVLEKAKRLVEHGKDVVILLDSI---TRLARAY---------NTVVP-PSGKILSGGVDANALHKPKRFFGAARNIEEGG 156 (249)
T ss_pred HHHHHHHHHHHCCCCEEEEEECH---HHhhhhh---------hhccc-cCCCCCCCCcChhhhhhhHHHHHHhcCCCCCC
Confidence 11111110000 000 0000 0111111 22222 3335689999 99999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHH-HHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 207 SLLFLDEPTSGLDSTIAQQ-ILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 207 ~illLDEPtsgLD~~~~~~-i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
+|.+| ||+.+|+.+... ++ +.++...+.|.|+.+|++. ....+|.|.+|+.|++.
T Consensus 157 sIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la--~~~~~paI~vl~s~sr~ 212 (249)
T cd01128 157 SLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLA--ERRIFPAIDILKSGTRK 212 (249)
T ss_pred ceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHh--hCCCCCeEEEcCCCCcc
Confidence 99999 999999655544 54 5555546789999999986 45789999999999873
No 434
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.31 E-value=1.8e-12 Score=124.75 Aligned_cols=63 Identities=25% Similarity=0.500 Sum_probs=54.3
Q ss_pred CccCHHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 186 RGVSGGERKRVSIGQEILINP---SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P---~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
..+|.|+||.+.++..+...+ .++++|||-++|+|..+..+++.|+++++.+.-+|+|||.|.
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~ 300 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPF 300 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GG
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccch
Confidence 456999999999999988776 899999999999999999999999988776889999999985
No 435
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.31 E-value=4.5e-12 Score=139.75 Aligned_cols=79 Identities=25% Similarity=0.333 Sum_probs=69.5
Q ss_pred CCCccCHHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHH
Q 010509 184 LTRGVSGGERKRVSIGQEIL----------INPSLLFLDEPT-SGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLY 252 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~----------~~P~illLDEPt-sgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~ 252 (508)
.+..||||||||++||++|+ .+|++++||||| ++||+.+...+.+.|+++ +|.|||++||++. ..
T Consensus 465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~--~~~~iiiish~~~--~~ 540 (562)
T PHA02562 465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL--KDTNVFVISHKDH--DP 540 (562)
T ss_pred ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC--CCCeEEEEECchh--ch
Confidence 34689999999999999887 599999999998 789999999999999998 5899999999975 44
Q ss_pred hhccEEEEEeC-CeE
Q 010509 253 YMFHKVLLLSE-GYP 266 (508)
Q Consensus 253 ~~~D~v~lL~~-G~i 266 (508)
..+|++++|.+ |+.
T Consensus 541 ~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 541 QKFDRHLKMEKVGRF 555 (562)
T ss_pred hhhhcEEEEEEECCe
Confidence 67899999986 543
No 436
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=6.6e-12 Score=147.74 Aligned_cols=80 Identities=24% Similarity=0.347 Sum_probs=73.8
Q ss_pred CCCccCHHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHh
Q 010509 184 LTRGVSGGERKRVSIGQEILI----------NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYY 253 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~~----------~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~ 253 (508)
.++.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++.+.|++|+++||++. ....
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~-~~~~ 1025 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPE-FRER 1025 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHH-HHHh
Confidence 457999999999999999986 79999999999999999999999999999888999999999986 5778
Q ss_pred hccEEEEEeCC
Q 010509 254 MFHKVLLLSEG 264 (508)
Q Consensus 254 ~~D~v~lL~~G 264 (508)
++|+|.|++.|
T Consensus 1026 ~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1026 IPHRILVKKTN 1036 (1042)
T ss_pred hCCEEEEEECC
Confidence 99999999754
No 437
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.30 E-value=2.5e-11 Score=119.16 Aligned_cols=150 Identities=17% Similarity=0.226 Sum_probs=93.4
Q ss_pred EEeCCeEEEEECCCCCcHHHH-HHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC
Q 010509 73 MVKPGEMLAMLGPSGCGKTTL-LTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP 151 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTL-L~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~ 151 (508)
-+++|++++|.|+|||||||| ++.+++..++ | ..+.|+..+ .|..+.+.....+..
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~--g--------------~~~~yi~~e------~~~~~~~~~~~~~g~- 76 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQN--G--------------YSVSYVSTQ------LTTTEFIKQMMSLGY- 76 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhC--C--------------CcEEEEeCC------CCHHHHHHHHHHhCC-
Confidence 489999999999999999999 7888886532 1 123555532 245555544333211
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCC----CHHHH
Q 010509 152 NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL----INPSLLFLDEPTSGL----DSTIA 223 (508)
Q Consensus 152 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~----~~P~illLDEPtsgL----D~~~~ 223 (508)
.- ++.... +.-...+. . ..+|+++.++-.+.+.+- .+|+++++||||+++ |+...
T Consensus 77 ---~~-------~~~~~~-~~l~~~~~-----~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~ 139 (230)
T PRK08533 77 ---DI-------NKKLIS-GKLLYIPV-----Y-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAV 139 (230)
T ss_pred ---ch-------HHHhhc-CcEEEEEe-----c-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHH
Confidence 11 011110 11001110 1 146777665555544333 369999999999999 88888
Q ss_pred HHHHHHHHHHHcCCCEEEEEecCcch------HHHhhccEEEEEe
Q 010509 224 QQILSILLKLANGGRTIVMTIHQPSN------MLYYMFHKVLLLS 262 (508)
Q Consensus 224 ~~i~~~L~~l~~~g~tii~s~H~~~~------~~~~~~D~v~lL~ 262 (508)
.++.+.++++++.|.|+++++|+... .+..++|-++.|+
T Consensus 140 ~~l~~~l~~l~~~g~tvi~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 140 NDLMAFFKRISSLNKVIILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHHHHHHHHhCCCEEEEEecccccccccceeEEEeeeEEEEEE
Confidence 89999999998878888776654320 1245667777776
No 438
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.28 E-value=2.7e-11 Score=113.95 Aligned_cols=145 Identities=20% Similarity=0.147 Sum_probs=96.2
Q ss_pred EEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHH
Q 010509 80 LAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEK 159 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~ 159 (508)
+.|.||+|+|||||.--++-.... +| +.+.|+.=+ .|..+.+.....+. .+.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-------~g--------~~v~~~s~e------~~~~~~~~~~~~~g----~~~~-- 54 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-------RG--------EPGLYVTLE------ESPEELIENAESLG----WDLE-- 54 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-------CC--------CcEEEEECC------CCHHHHHHHHHHcC----CChH--
Confidence 678999999999987755432100 11 123444321 24444443332221 1111
Q ss_pred HHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHH
Q 010509 160 IKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK------RVSIGQEILINPSLLFLDEPTSGLD---STIAQQILSIL 230 (508)
Q Consensus 160 ~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq------Rv~Ia~aL~~~P~illLDEPtsgLD---~~~~~~i~~~L 230 (508)
-+...|+....+.. +..+|+||+| +.........+|+++++|||++.+| ......+.+.+
T Consensus 55 ------~l~~~g~l~~~d~~-----~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~ 123 (187)
T cd01124 55 ------RLEDEGLLAIVDAD-----PDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLL 123 (187)
T ss_pred ------HHHhcCCeEEEecC-----ccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHH
Confidence 12234444444433 3478999998 4555555667999999999999999 88888899999
Q ss_pred HHHHcCCCEEEEEecCcch--------HHHhhccEEEEEe
Q 010509 231 LKLANGGRTIVMTIHQPSN--------MLYYMFHKVLLLS 262 (508)
Q Consensus 231 ~~l~~~g~tii~s~H~~~~--------~~~~~~D~v~lL~ 262 (508)
+.+++.|.|+|+++|+... .+..++|.++.|+
T Consensus 124 ~~l~~~g~tvi~v~~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 124 FALKRFGVTTLLTSEQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred HHHHHCCCEEEEEeccccCCCcccCcCceeEeeeEEEEEE
Confidence 9998889999999998653 2568899999887
No 439
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.26 E-value=1.5e-11 Score=119.58 Aligned_cols=134 Identities=19% Similarity=0.148 Sum_probs=88.9
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-CcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-RINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET 141 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 141 (508)
++.+-+|+++..++|++++|.||||+||||+++++++..- ... |..+..+ ...++++ +.++..+...|+
T Consensus 16 ~~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~------G~~vpa~-~~~i~~~---~~i~~~~~~~d~ 85 (218)
T cd03286 16 SSFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQM------GMDVPAK-SMRLSLV---DRIFTRIGARDD 85 (218)
T ss_pred CCeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHc------CCccCcc-ccEeccc---cEEEEecCcccc
Confidence 3578899999999999999999999999999999998531 111 1111110 0011111 222222222222
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH--HHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 010509 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG--GERKRVSIGQEILINPSLLFLDEPTSGLD 219 (508)
Q Consensus 142 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG--GerqRv~Ia~aL~~~P~illLDEPtsgLD 219 (508)
+.. ++|. .|-+|++-....+++|+++++|||.+|+|
T Consensus 86 ~~~------------------------------------------~~StF~~e~~~~~~il~~~~~~sLvLlDE~~~Gt~ 123 (218)
T cd03286 86 IMK------------------------------------------GESTFMVELSETANILRHATPDSLVILDELGRGTS 123 (218)
T ss_pred ccc------------------------------------------CcchHHHHHHHHHHHHHhCCCCeEEEEecccCCCC
Confidence 211 1121 23444444444567899999999999999
Q ss_pred HHHHHHHHHH-HHHHHcC-CCEEEEEecCcc
Q 010509 220 STIAQQILSI-LLKLANG-GRTIVMTIHQPS 248 (508)
Q Consensus 220 ~~~~~~i~~~-L~~l~~~-g~tii~s~H~~~ 248 (508)
+.....+... ++.+.+. +.++|++||+++
T Consensus 124 ~~dg~~la~ail~~L~~~~~~~~i~~TH~~e 154 (218)
T cd03286 124 THDGYAIAHAVLEYLVKKVKCLTLFSTHYHS 154 (218)
T ss_pred chHHHHHHHHHHHHHHHhcCCcEEEEeccHH
Confidence 9999998888 7778765 899999999975
No 440
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.24 E-value=1e-10 Score=128.54 Aligned_cols=136 Identities=19% Similarity=0.329 Sum_probs=102.6
Q ss_pred CCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH------HHHcCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHhhCC
Q 010509 134 PYLTVTETMVFTALLQLPNSFTEKEKIKCAEAV------MTELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEILINP 206 (508)
Q Consensus 134 ~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~------l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P 206 (508)
..|++.|.+.|...+.+... .....++...++ |-.+||.-. .++. ...|||||.||+-+|..+=++=
T Consensus 427 ~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~-----a~TLSGGEaQRIRLAtqiGS~L 500 (935)
T COG0178 427 SEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLTLSRS-----AGTLSGGEAQRIRLATQIGSGL 500 (935)
T ss_pred hhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCccccccc-----CCCcChhHHHHHHHHHHhcccc
Confidence 35778888888776653221 111112222333 334566543 2333 3489999999999999997763
Q ss_pred --CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhhHHH
Q 010509 207 --SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGAMN 277 (508)
Q Consensus 207 --~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~~ 277 (508)
=+++||||+-||-+..-.++++.|++|++.|-|+|++.||++ ....+|+|+=| +.|+|++.|+++++++
T Consensus 501 tGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDed--ti~~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~ 577 (935)
T COG0178 501 TGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDED--TIRAADHIIDIGPGAGEHGGEIVAEGTPEELLA 577 (935)
T ss_pred eeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHH--HHhhcCEEEeeCCCCCcCCCEEEEccCHHHHHh
Confidence 467999999999999999999999999999999999999964 55789999987 6789999999998864
No 441
>PRK13695 putative NTPase; Provisional
Probab=99.24 E-value=4.5e-12 Score=118.74 Aligned_cols=78 Identities=10% Similarity=0.141 Sum_probs=63.9
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCC--CCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEP--TSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEP--tsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
.+||+|+.+..+++..+.+|+++++||| +.++| ..+++.+.++.+.|+++|+++|+. ......|++..+.+|
T Consensus 78 ~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~~~~~~i~v~h~~--~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 78 NLEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLDSEKPVIATLHRR--SVHPFVQEIKSRPGG 151 (174)
T ss_pred ehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHhCCCeEEEEECch--hhHHHHHHHhccCCc
Confidence 6999999999999999999999999995 43444 445677777666789999999984 355778999999999
Q ss_pred eEEEEc
Q 010509 265 YPLYSG 270 (508)
Q Consensus 265 ~iv~~G 270 (508)
+++.--
T Consensus 152 ~i~~~~ 157 (174)
T PRK13695 152 RVYELT 157 (174)
T ss_pred EEEEEc
Confidence 987653
No 442
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.22 E-value=3.8e-11 Score=122.89 Aligned_cols=142 Identities=15% Similarity=0.159 Sum_probs=96.7
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe-CChhccccEEEEecCCC-CCCCCCHHHHHHHHHH
Q 010509 70 ITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP-FSNQMTRNTGFVTQEDV-LSPYLTVTETMVFTAL 147 (508)
Q Consensus 70 vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~-~~~~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~ 147 (508)
+++.+++|+.++|.||+|||||||+++|++.+++..|.+.+.... +....+..+.++.+... -..
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~------------- 203 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLA------------- 203 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcC-------------
Confidence 557788999999999999999999999999998888877775321 00001112222211100 000
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 010509 148 LQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL 227 (508)
Q Consensus 148 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~ 227 (508)
.++ ..-.+..+|-.+|+++++|||.+ .+.+
T Consensus 204 ---------------------------------------~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~e~~ 233 (308)
T TIGR02788 204 ---------------------------------------KVT----PKDLLQSCLRMRPDRIILGELRG-------DEAF 233 (308)
T ss_pred ---------------------------------------ccC----HHHHHHHHhcCCCCeEEEeccCC-------HHHH
Confidence 111 11134456778999999999996 3456
Q ss_pred HHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHH
Q 010509 228 SILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 228 ~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~ 276 (508)
+.++.+...+.+++.|+|..+ .....||+..|..|++...|.+.+..
T Consensus 234 ~~l~a~~~g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 234 DFIRAVNTGHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHhcCCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHHH
Confidence 677776643446799999987 44568999999999988888877665
No 443
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=99.17 E-value=9.8e-11 Score=106.40 Aligned_cols=64 Identities=20% Similarity=0.283 Sum_probs=49.3
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchH
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTS----------GLDSTIAQQILSILLKLANGGRTIVMTIHQPSNM 250 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPts----------gLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~ 250 (508)
..+.++.++...+.+...+|+++++|||++ +.|......+.+++....+.+.|+|+++|.....
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 67 DPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 345666677888888999999999999994 5555656666666666656699999999987643
No 444
>PRK03918 chromosome segregation protein; Provisional
Probab=99.16 E-value=7.7e-11 Score=136.63 Aligned_cols=77 Identities=27% Similarity=0.327 Sum_probs=68.4
Q ss_pred CCCccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccE
Q 010509 184 LTRGVSGGERK------RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 184 ~~~~LSGGerq------Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~ 257 (508)
.+..|||||++ |+++|++++.+|+++++||||+|||+..+..+.+.|..+++.+.+||++||++. +...||+
T Consensus 785 ~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~--~~~~~d~ 862 (880)
T PRK03918 785 PLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEE--LKDAADY 862 (880)
T ss_pred ChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHH--HHHhCCe
Confidence 45689999999 455566788999999999999999999999999999998777889999999974 5688999
Q ss_pred EEEEe
Q 010509 258 VLLLS 262 (508)
Q Consensus 258 v~lL~ 262 (508)
+++|.
T Consensus 863 ~~~l~ 867 (880)
T PRK03918 863 VIRVS 867 (880)
T ss_pred EEEEE
Confidence 99998
No 445
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.14 E-value=9.5e-10 Score=126.13 Aligned_cols=69 Identities=22% Similarity=0.191 Sum_probs=60.6
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHcCCCEEEEEecCcchHH--------HhhccEEEEEeCCeEEEEcC
Q 010509 203 LINPSLLFLDEPTSGL-DSTIAQQILSILLKLANGGRTIVMTIHQPSNML--------YYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 203 ~~~P~illLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~--------~~~~D~v~lL~~G~iv~~G~ 271 (508)
..+|+++++|||+.+| |+..+..+.+.++++++.|.+++++||+++... .+.||+.++|.+|++...|.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 5799999999999999 799999999999999888999999999997532 26799999999998876654
No 446
>COG3910 Predicted ATPase [General function prediction only]
Probab=99.12 E-value=3.5e-10 Score=105.37 Aligned_cols=78 Identities=24% Similarity=0.358 Sum_probs=58.5
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
...-|-||-=---+.+. .++--+.+||||-++|.+.-+.+++..|+++++.|.-+|+.||.|-... ----+|+-++.+
T Consensus 127 Lh~~SHGEsf~~i~~~r-f~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlA-iP~A~I~~~~~~ 204 (233)
T COG3910 127 LHHMSHGESFLAIFHNR-FNGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLA-IPGAEIYEISES 204 (233)
T ss_pred hhhhccchHHHHHHHHH-hccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhhee-CCCcEEEEEecC
Confidence 34679998654333333 4567899999999999999999999999999999999999999984221 112345555544
No 447
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=99.12 E-value=1.9e-10 Score=135.23 Aligned_cols=79 Identities=30% Similarity=0.300 Sum_probs=69.8
Q ss_pred CCCccCHHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhc
Q 010509 184 LTRGVSGGERKRVSIGQEILI--------NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMF 255 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~~--------~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~ 255 (508)
.+++|||||+++++||++|+. +|++||+||||+|||+.+...+++.|.++.+.|+||+++||... ...++-
T Consensus 946 ~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~-l~~~i~ 1024 (1047)
T PRK10246 946 DTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEA-MKERIP 1024 (1047)
T ss_pred CcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHH-HHHhcc
Confidence 457999999999999999996 89999999999999999999999999999888999999999754 455666
Q ss_pred cEEEEEeC
Q 010509 256 HKVLLLSE 263 (508)
Q Consensus 256 D~v~lL~~ 263 (508)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 67777654
No 448
>TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein. This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.12 E-value=3e-09 Score=104.23 Aligned_cols=146 Identities=16% Similarity=0.216 Sum_probs=119.1
Q ss_pred cChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010509 328 YRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLAIGAMVMEQKSATILGSII 407 (508)
Q Consensus 328 Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~ 407 (508)
.+...|+++|.+.+++..++..+++..+.|++.+++. ..++.+++..++..++..++|.++++..++.+.+..+.+++
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~~~~~~i~~~~ 164 (236)
T TIGR01247 87 ASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSMEGFQIIMSML 164 (236)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3578899999999999999999999999998877554 34566666667777888999999999999999999999999
Q ss_pred HHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCCCCccccCCcccceeeCCCcchhHHHHH
Q 010509 408 MQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDSGGLCLVGEHPTIKKVGLHRKYYSVIAL 485 (508)
Q Consensus 408 ~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~~il 485 (508)
..+++.+||.+.| .+|+|++|+.|++|++|+.|++-....++. + ..+.+.+++++
T Consensus 165 ~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~~----~-------------------~~~~~~~~~~l 221 (236)
T TIGR01247 165 MLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGVS----P-------------------TFPLEQDLLVL 221 (236)
T ss_pred HHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCCC----c-------------------ccchHHHHHHH
Confidence 9999999999999 899999999999999999999665433321 0 01345578888
Q ss_pred HHHHHHHHHHHHH
Q 010509 486 AIMLVGYRLIAYI 498 (508)
Q Consensus 486 ~~~~~~~~~~~~~ 498 (508)
+++.+++.+++..
T Consensus 222 ~~~~~~~~~l~~~ 234 (236)
T TIGR01247 222 TLLAVIFVGIAAV 234 (236)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888777654
No 449
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.11 E-value=3e-10 Score=120.19 Aligned_cols=155 Identities=18% Similarity=0.141 Sum_probs=110.5
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
..+++++ +.+.+|+.++|+|+||+|||||+++|++..+++.|.|.+.|++. .+|.|.+.
T Consensus 144 iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg--------------------~ev~e~~~ 202 (432)
T PRK06793 144 IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG--------------------REVKDFIR 202 (432)
T ss_pred CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc--------------------ccHHHHHH
Confidence 4688885 99999999999999999999999999999888888776665431 35666543
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh-------hCCCEEEEeCCCC
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL-------INPSLLFLDEPTS 216 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~-------~~P~illLDEPts 216 (508)
... ..-|+.+. ..+ ....+-|.|+|+|+..+.+.+ .++-++++|+||+
T Consensus 203 ~~l---------------------~~~gl~~t--vvv--~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VLlilDslTr 257 (432)
T PRK06793 203 KEL---------------------GEEGMRKS--VVV--VATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTR 257 (432)
T ss_pred HHh---------------------hhccccee--EEE--EECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEEEEecchHH
Confidence 211 11122111 011 123478999999999998877 7899999999999
Q ss_pred CCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 217 GLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 217 gLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
..|+. .++-..+.+.-..|.+..+.+|. + ++++|.-...+|.+...+.
T Consensus 258 ~a~A~--reisl~~~e~p~~G~~~~~~s~l-~----~L~ERag~~~~GSiT~~~t 305 (432)
T PRK06793 258 FADAR--RSVDIAVKELPIGGKTLLMESYM-K----KLLERSGKTQKGSITGIYT 305 (432)
T ss_pred HHHHH--HHHHHHhcCCCCCCeeeeeeccc-h----hHHHHhccCCCcceEEEEE
Confidence 99996 55555666665458888888884 3 2334444457888765554
No 450
>TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family. This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance.
Probab=99.08 E-value=4.4e-09 Score=102.99 Aligned_cols=148 Identities=11% Similarity=0.159 Sum_probs=107.6
Q ss_pred ChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHH
Q 010509 329 RLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLAIGAMVM---EQKSATILGS 405 (508)
Q Consensus 329 ~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~---~~~~a~~~~~ 405 (508)
+...|+++|.+..++..++..+++ .+++++.|++..... +..++.+.+....+.+++.+++++++ +.+.+..+++
T Consensus 77 ~~~~~l~g~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~~ 154 (232)
T TIGR00025 77 PRLGILAGRSLAVVARVFLQTLIL-LVIGFVLGFRFAGGA-LTALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVAN 154 (232)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 678899999988888876665444 455677898865443 33334444555666677777777764 5555588888
Q ss_pred HHHHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCCCCccccCCcccceeeCCCcchhHHH
Q 010509 406 IIMQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDSGGLCLVGEHPTIKKVGLHRKYYSVI 483 (508)
Q Consensus 406 ~~~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~~ 483 (508)
++..+++++||.+.| .+|.|++|+.+++|++|+.+++-..-.++. +....|.+++
T Consensus 155 ~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~~-----------------------~~~~~~~~~~ 211 (232)
T TIGR00025 155 LVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVSV-----------------------DTFGAVRDLV 211 (232)
T ss_pred HHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCCC-----------------------ChhhHHHHHH
Confidence 999999999999999 999999999999999999998755433221 0123466788
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010509 484 ALAIMLVGYRLIAYIALM 501 (508)
Q Consensus 484 il~~~~~~~~~~~~~~l~ 501 (508)
+++++.+++..++....|
T Consensus 212 ~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 212 VVLAFWVALAALAAIRLR 229 (232)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 888888887777766554
No 451
>PRK01156 chromosome segregation protein; Provisional
Probab=99.06 E-value=9.8e-10 Score=127.77 Aligned_cols=77 Identities=25% Similarity=0.313 Sum_probs=66.7
Q ss_pred CCCccCHHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cC-C-CEEEEEecCcchHHHhh
Q 010509 184 LTRGVSGGERKRVSI------GQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA-NG-G-RTIVMTIHQPSNMLYYM 254 (508)
Q Consensus 184 ~~~~LSGGerqRv~I------a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~-~~-g-~tii~s~H~~~~~~~~~ 254 (508)
.+..||||||+|++| |++++.+|++++|||||+|||+.....+.+.++... +. | .++|++||++. ....
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~--~~~~ 875 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRE--LLSV 875 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchH--HHHh
Confidence 356899999999975 589999999999999999999999999999998643 33 3 48999999985 3478
Q ss_pred ccEEEEEe
Q 010509 255 FHKVLLLS 262 (508)
Q Consensus 255 ~D~v~lL~ 262 (508)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999998
No 452
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.03 E-value=5.1e-10 Score=134.55 Aligned_cols=69 Identities=19% Similarity=0.373 Sum_probs=61.5
Q ss_pred CccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-----CCCEEEEEecCcchHHHhh
Q 010509 186 RGVSGGERK------RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-----GGRTIVMTIHQPSNMLYYM 254 (508)
Q Consensus 186 ~~LSGGerq------Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tii~s~H~~~~~~~~~ 254 (508)
..||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. .|.+||++||++. .+..+
T Consensus 1198 ~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~-~~~~~ 1276 (1311)
T TIGR00606 1198 GRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDED-FVELL 1276 (1311)
T ss_pred CCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHH-HHHHH
Confidence 479999999 99999999999999999999999999999999999988742 3789999999986 45555
Q ss_pred c
Q 010509 255 F 255 (508)
Q Consensus 255 ~ 255 (508)
+
T Consensus 1277 ~ 1277 (1311)
T TIGR00606 1277 G 1277 (1311)
T ss_pred h
Confidence 3
No 453
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=99.00 E-value=3.2e-09 Score=104.16 Aligned_cols=161 Identities=16% Similarity=0.102 Sum_probs=98.1
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHhc-CCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 66 ILKGI-TGMVKPGEMLAMLGPSGCGKTTLLTALGG-RLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 66 iL~~v-s~~v~~Ge~~ailG~nGsGKSTLL~~L~g-~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
-|+.+ .+=+++|+++.|.|++|+|||||...++- ... + .+.+.|+..+. +..+.+.
T Consensus 13 ~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~--------~--------g~~~~y~~~e~------~~~~~~~ 70 (234)
T PRK06067 13 ELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALK--------Q--------GKKVYVITTEN------TSKSYLK 70 (234)
T ss_pred HHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHh--------C--------CCEEEEEEcCC------CHHHHHH
Confidence 35553 56799999999999999999999988852 111 1 12345555432 2333322
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhh--CCCEEEEeCCCCC---C
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILI--NPSLLFLDEPTSG---L 218 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~--~P~illLDEPtsg---L 218 (508)
-...+. ++-. +.+. -|.....+..+. .....|.++++.+.....++. +|+++++||||+. .
T Consensus 71 ~~~~~g----~~~~-------~~~~-~g~l~i~~~~~~--~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~ 136 (234)
T PRK06067 71 QMESVK----IDIS-------DFFL-WGYLRIFPLNTE--GFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYA 136 (234)
T ss_pred HHHHCC----CChh-------HHHh-CCCceEEecccc--ccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcC
Confidence 221111 1100 0000 011111111111 012356788999999999997 9999999999964 4
Q ss_pred CHHHHHHHHHHHHHHHcCCCEEEEEecCcch------HHHhhccEEEEEe
Q 010509 219 DSTIAQQILSILLKLANGGRTIVMTIHQPSN------MLYYMFHKVLLLS 262 (508)
Q Consensus 219 D~~~~~~i~~~L~~l~~~g~tii~s~H~~~~------~~~~~~D~v~lL~ 262 (508)
|.....++++.++.++++|.|+++++|+... .+..++|-++.|+
T Consensus 137 ~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~DgvI~L~ 186 (234)
T PRK06067 137 EEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSICDVYLKLR 186 (234)
T ss_pred CHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhheEEEEEEE
Confidence 5555556666677777779999999998653 1456777777776
No 454
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=99.00 E-value=1.7e-09 Score=103.76 Aligned_cols=57 Identities=16% Similarity=0.282 Sum_probs=42.5
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+++++|..+|+++++|||. |..+...+ .+.+..|..++.|+|.++. ....||++.|.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~~G~~v~~t~Ha~~~--~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA----LTAAETGHLVMSTLHTNSA--AKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHHcCCEEEEEecCCcH--HHHHhHHHhhc
Confidence 4778899999999999996 55543333 3445679999999999863 35678887664
No 455
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=98.97 E-value=7.6e-10 Score=131.42 Aligned_cols=76 Identities=14% Similarity=0.232 Sum_probs=67.0
Q ss_pred CCCccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEE
Q 010509 184 LTRGVSGGERKRVSIGQEIL----INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVL 259 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~----~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~ 259 (508)
.+..||||||+|++||++++ .+|++++|||||++||+.+...+.+.|+++++ +.++|++||++.. ...||+++
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~-~~~~i~~sh~~~~--~~~~d~~~ 1162 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK-NTQFIVITHNKGT--MEVADQLY 1162 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc-CCEEEEEEcChhH--HHHhhhHe
Confidence 45689999999999999985 56799999999999999999999999999875 4789999999863 46799998
Q ss_pred EEe
Q 010509 260 LLS 262 (508)
Q Consensus 260 lL~ 262 (508)
.+.
T Consensus 1163 ~~~ 1165 (1179)
T TIGR02168 1163 GVT 1165 (1179)
T ss_pred eee
Confidence 765
No 456
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.97 E-value=1.9e-09 Score=115.67 Aligned_cols=151 Identities=19% Similarity=0.246 Sum_probs=96.5
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHH
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVF 144 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 144 (508)
.++++.+..+++|++++++||||+||||++..|++.+....|. +.++++.+|. ...++.|+|.+
T Consensus 244 ~~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~-------------~kV~LI~~Dt---~RigA~EQLr~ 307 (484)
T PRK06995 244 PVLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA-------------SKVALLTTDS---YRIGGHEQLRI 307 (484)
T ss_pred hhccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC-------------CeEEEEeCCc---cchhHHHHHHH
Confidence 3567777788899999999999999999999999976444442 2478888875 35789999998
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH-HHHHHHHHhhCC-----CEEEEeCCCCCC
Q 010509 145 TALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK-RVSIGQEILINP-----SLLFLDEPTSGL 218 (508)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq-Rv~Ia~aL~~~P-----~illLDEPtsgL 218 (508)
.+..... +........+...+..++.+....++. +...+++. .+.-..+++.++ .+|+||.++.+
T Consensus 308 ~AeilGV---pv~~~~~~~Dl~~aL~~L~d~d~VLID-----TaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~- 378 (484)
T PRK06995 308 YGKILGV---PVHAVKDAADLRLALSELRNKHIVLID-----TIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG- 378 (484)
T ss_pred HHHHhCC---CeeccCCchhHHHHHHhccCCCeEEeC-----CCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH-
Confidence 7765421 111112223344556677776666664 32222322 234444555554 68999999887
Q ss_pred CHHHHHHHHHHHHHHHcCCCEEEEEec
Q 010509 219 DSTIAQQILSILLKLANGGRTIVMTIH 245 (508)
Q Consensus 219 D~~~~~~i~~~L~~l~~~g~tii~s~H 245 (508)
..+.+.++.....+.+=++.|+
T Consensus 379 -----~~l~~i~~~f~~~~~~g~IlTK 400 (484)
T PRK06995 379 -----DTLNEVVQAYRGPGLAGCILTK 400 (484)
T ss_pred -----HHHHHHHHHhccCCCCEEEEeC
Confidence 3345555555555555444444
No 457
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=98.95 E-value=5.4e-10 Score=118.33 Aligned_cols=51 Identities=20% Similarity=0.264 Sum_probs=46.8
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCccc-EEEECCEeCC
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING-RITYNGKPFS 116 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G-~I~~~G~~~~ 116 (508)
+.+|++||+++++||+++|+|||||||||||+ +|+..|++| +|.++|+++.
T Consensus 19 ~~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~ 70 (504)
T TIGR03238 19 ERILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSF 70 (504)
T ss_pred HHHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECC
Confidence 46899999999999999999999999999999 777777777 7999999874
No 458
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.94 E-value=5.7e-09 Score=102.82 Aligned_cols=136 Identities=22% Similarity=0.396 Sum_probs=86.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECC-EeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG-KPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFT 155 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G-~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~ 155 (508)
|++..|.||+|+|||||.-.++=-. .+|.=.+.+ .... ....+-|+.=|+ +
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v--a~G~~~~g~~~~~~--~~~~Vlyi~~Ed------------------------~ 52 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM--ALGKNLFGGGLKVT--EPGRVVYLSAED------------------------P 52 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH--hcCccccCCccccC--CCceEEEEECCC------------------------C
Confidence 6788999999999999988876322 122111111 1111 122355554321 2
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHH----------------HHhhCCCEEEEeCCCC---
Q 010509 156 EKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQ----------------EILINPSLLFLDEPTS--- 216 (508)
Q Consensus 156 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~----------------aL~~~P~illLDEPts--- 216 (508)
.++..+|+..+...+++.+..++.. ..+|+.|++.+++ ....+|+++++| |++
T Consensus 53 ~~~i~~Rl~~i~~~~~~~~~~~rl~-------~~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl~~~~ 124 (239)
T cd01125 53 REEIHRRLEAILQHLEPDDAGDRLF-------IDSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PLVSFH 124 (239)
T ss_pred HHHHHHHHHHHHhhcCCcCcccceE-------EeccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-ChHHhC
Confidence 2334456666666666655444332 2245555555443 335799999999 765
Q ss_pred ---CCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcc
Q 010509 217 ---GLDSTIAQQILSILLKLANG-GRTIVMTIHQPS 248 (508)
Q Consensus 217 ---gLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~ 248 (508)
.+|+.....+++.|++++++ |.||++++|...
T Consensus 125 ~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~K 160 (239)
T cd01125 125 GVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVRK 160 (239)
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccCc
Confidence 47999999999999999864 999999999863
No 459
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.88 E-value=6.8e-08 Score=84.27 Aligned_cols=117 Identities=32% Similarity=0.434 Sum_probs=77.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCCCcc-cEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLGRIN-GRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF 154 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~-G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~ 154 (508)
++..+.|.||+|+||||+++.|+....... +-+.++........ .....
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~------------- 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEV-----------------LDQLL------------- 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccC-----------------HHHHH-------------
Confidence 467899999999999999999999875443 44444443321100 00000
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH------
Q 010509 155 TEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILS------ 228 (508)
Q Consensus 155 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~------ 228 (508)
.... ........+++..+..++++--.+|+++++||+..-.+.........
T Consensus 51 ------------------~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~ 107 (148)
T smart00382 51 ------------------LIIV-----GGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRL 107 (148)
T ss_pred ------------------hhhh-----hccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHH
Confidence 0000 00112567777888888877777799999999999999988887765
Q ss_pred HHHHHHcCCCEEEEEec
Q 010509 229 ILLKLANGGRTIVMTIH 245 (508)
Q Consensus 229 ~L~~l~~~g~tii~s~H 245 (508)
........+..+|+++|
T Consensus 108 ~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 108 LLLLKSEKNLTVILTTN 124 (148)
T ss_pred HHHHHhcCCCEEEEEeC
Confidence 22333345788999998
No 460
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.86 E-value=3.8e-09 Score=125.64 Aligned_cols=77 Identities=13% Similarity=0.186 Sum_probs=68.1
Q ss_pred CCCccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEE
Q 010509 184 LTRGVSGGERKRVSIGQEILI----NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVL 259 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~~----~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~ 259 (508)
.+..||||||++++||.+++. +|++++||||+++||+.....+.+.|+++++ +.++|++||++. ....||+++
T Consensus 1071 ~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~-~~~~i~~t~~~~--~~~~~d~~~ 1147 (1164)
T TIGR02169 1071 RLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG-EAQFIVVSLRSP--MIEYADRAI 1147 (1164)
T ss_pred cchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC-CCeEEEEECcHH--HHHhcceeE
Confidence 356899999999999999985 6799999999999999999999999999865 478999999974 558999998
Q ss_pred EEeC
Q 010509 260 LLSE 263 (508)
Q Consensus 260 lL~~ 263 (508)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8763
No 461
>PRK02224 chromosome segregation protein; Provisional
Probab=98.86 E-value=5.1e-09 Score=121.59 Aligned_cols=78 Identities=28% Similarity=0.371 Sum_probs=67.2
Q ss_pred CCccCHHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCC-EEEEEecCcchHH
Q 010509 185 TRGVSGGERK------RVSIGQEILIN-----P-SLLFLDEPTSGLDSTIAQQILSILLKLANGGR-TIVMTIHQPSNML 251 (508)
Q Consensus 185 ~~~LSGGerq------Rv~Ia~aL~~~-----P-~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~-tii~s~H~~~~~~ 251 (508)
+..||||||+ |+++|++++.+ | +++++||||++||+.....+.+.|+++.+.|. +||++||++.. +
T Consensus 779 ~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~-~ 857 (880)
T PRK02224 779 PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDEL-V 857 (880)
T ss_pred hhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHH-H
Confidence 5689999999 89999998864 3 67999999999999999999999999986664 89999999853 3
Q ss_pred HhhccEEEEEeCC
Q 010509 252 YYMFHKVLLLSEG 264 (508)
Q Consensus 252 ~~~~D~v~lL~~G 264 (508)
..+|+++.|...
T Consensus 858 -~~ad~~~~~~~~ 869 (880)
T PRK02224 858 -GAADDLVRVEKD 869 (880)
T ss_pred -HhcCeeEEeecC
Confidence 679999999743
No 462
>TIGR01291 nodJ ABC-2 type transporter, NodJ family. Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins.
Probab=98.85 E-value=1.5e-07 Score=93.63 Aligned_cols=159 Identities=11% Similarity=0.054 Sum_probs=116.6
Q ss_pred hhhhhcCCCCc--------ChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 010509 318 MLEKEIPSGMY--------RLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLA 389 (508)
Q Consensus 318 v~~rE~~~~~Y--------~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~ 389 (508)
.+.|||.+|.+ ++..+.++|++.+.-..++..++...+.+++ |..+. ...+..+...++..++..++|++
T Consensus 81 ~~~~~r~~g~~~~l~~~Pv~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~~-g~~~~-~~~l~~~~~~ll~~l~~~~lg~~ 158 (253)
T TIGR01291 81 TFARMRVTRTWEAMLYTPITVGDIVLGEVAWAATKASLAGTIIGVVTATL-GYIEW-WSLIYILPVIALTGLAFASLSML 158 (253)
T ss_pred HHHHHHHcccHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhchh-hhHHHHHHHHHHHHHHHHHHHHH
Confidence 45566655553 5677899999988776666666555544433 44433 33444445556677777899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCCCCccccCCc
Q 010509 390 IGAMVMEQKSATILGSIIMQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDSGGLCLVGEH 467 (508)
Q Consensus 390 i~~~~~~~~~a~~~~~~~~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~~~~c~~~~~ 467 (508)
+|++.++.+.+..+.+++..|++..||.+.| .+|.|++|+.+++|+.|+.|++-..-+++. .
T Consensus 159 ~a~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~~--~-------------- 222 (253)
T TIGR01291 159 VAALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGGP--G-------------- 222 (253)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCCC--c--------------
Confidence 9999999999999999999999999999998 999999999999999999999655533321 0
Q ss_pred ccceeeCCCcchhHHHHHHHHHHHHHHHHHHHHHh
Q 010509 468 PTIKKVGLHRKYYSVIALAIMLVGYRLIAYIALMR 502 (508)
Q Consensus 468 ~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~l~~ 502 (508)
.+.|.++++++++.+++..++....|+
T Consensus 223 --------~~~~~~~~~l~~~~vv~~~la~~~fr~ 249 (253)
T TIGR01291 223 --------TQVGLHLGALCLYAVVPFFISAALLRR 249 (253)
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 023456778888888777776665554
No 463
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.82 E-value=1.9e-10 Score=124.73 Aligned_cols=166 Identities=20% Similarity=0.230 Sum_probs=103.8
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHH--hcCCCCcccEEEECCEeCChhc---cccEEEEecCCCCCCCCCHH
Q 010509 66 ILKGI-TGMVKPGEMLAMLGPSGCGKTTLLTAL--GGRLGRINGRITYNGKPFSNQM---TRNTGFVTQEDVLSPYLTVT 139 (508)
Q Consensus 66 iL~~v-s~~v~~Ge~~ailG~nGsGKSTLL~~L--~g~~~~~~G~I~~~G~~~~~~~---~~~i~yv~Q~~~l~~~lTv~ 139 (508)
-|+.+ .+=+.+|..+.|.|++|||||||..-. .|....-+.-+++.......++ .+..|+-.|+...-..+.+
T Consensus 9 gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~~~l~~~~~~~G~~~~~~~~~g~l~~- 87 (484)
T TIGR02655 9 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESPQDIIKNARSFGWDLQKLVDEGKLFI- 87 (484)
T ss_pred hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCHHHHHHHHHHcCCCHHHHhhcCceEE-
Confidence 35664 567899999999999999999998866 3433323445666554332222 1234443332110000000
Q ss_pred HHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHH--HHHhhCCCEEEEeCCCCC
Q 010509 140 ETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIG--QEILINPSLLFLDEPTSG 217 (508)
Q Consensus 140 E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia--~aL~~~P~illLDEPtsg 217 (508)
.. .... ...+.+++.+++.+..++.. +.+|+|++|||.|+ .+|..+|+..
T Consensus 88 --------~~----~~~~---~~~~~~~~~~~l~~~l~~i~-----~~ls~g~~qRVvIDSl~aL~~~~~~~-------- 139 (484)
T TIGR02655 88 --------LD----ASPD---PEGQDVVGGFDLSALIERIN-----YAIRKYKAKRVSIDSVTAVFQQYDAV-------- 139 (484)
T ss_pred --------Ee----cCch---hccccccccCCHHHHHHHHH-----HHHHHhCCcEEEEeehhHhhhhcCch--------
Confidence 00 0000 00112344556666555554 38999999999999 6666665543
Q ss_pred CCHHHHHHHHHHHHHHHcCCCEEEEEecCcchH--------HHhhccEEEEEe
Q 010509 218 LDSTIAQQILSILLKLANGGRTIVMTIHQPSNM--------LYYMFHKVLLLS 262 (508)
Q Consensus 218 LD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~--------~~~~~D~v~lL~ 262 (508)
...+.++.++++.+++.|.|+|+++|++... ...++|.|+.|+
T Consensus 140 --~~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 140 --SVVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred --HHHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 4677889999999988899999999987531 256889999886
No 464
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.76 E-value=9.1e-08 Score=110.45 Aligned_cols=71 Identities=15% Similarity=0.175 Sum_probs=55.4
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHh-hccEEEEEeCCeEEE
Q 010509 198 IGQEILINPSLLFLDEPTSGL-DSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYY-MFHKVLLLSEGYPLY 268 (508)
Q Consensus 198 Ia~aL~~~P~illLDEPtsgL-D~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~-~~D~v~lL~~G~iv~ 268 (508)
|++++..+|+++++|||+.+| |+..+..+.+.++++++.|.+++++||+++..... .++.++-..+.++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~s~i~~~ilen~~t~I~L 752 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAANSGILDVIVESTATKIFL 752 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhCchHHHHHHcCCcceec
Confidence 577788999999999999999 79999999999999988899999999999753321 234333334445443
No 465
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.74 E-value=5.7e-08 Score=100.97 Aligned_cols=123 Identities=20% Similarity=0.364 Sum_probs=76.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCC-CcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLG-RINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN 152 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~ 152 (508)
.+++.++.|.||+||||||+|++|.+.+. +.+|.|...+.++........+.+.|..
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~e---------------------- 176 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQRE---------------------- 176 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccc----------------------
Confidence 35788999999999999999999998654 3456665543332110000001111100
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 010509 153 SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK 232 (508)
Q Consensus 153 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~ 232 (508)
.|.. ..+ -.-+++++|-.+|+++++||+. |+.++...++
T Consensus 177 -----------------vg~~-------------~~~----~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l~---- 215 (343)
T TIGR01420 177 -----------------VGLD-------------TLS----FANALRAALREDPDVILIGEMR---DLETVELALT---- 215 (343)
T ss_pred -----------------cCCC-------------CcC----HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHHH----
Confidence 0000 001 1123566888999999999997 8888765444
Q ss_pred HHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 233 LANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 233 l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
.+..|.+++.|+|-.+. ....+|++-|
T Consensus 216 aa~tGh~v~~T~Ha~~~--~~~~~Rl~~~ 242 (343)
T TIGR01420 216 AAETGHLVFGTLHTNSA--AQTIERIIDV 242 (343)
T ss_pred HHHcCCcEEEEEcCCCH--HHHHHHHHHh
Confidence 35679999999998653 3456776544
No 466
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.73 E-value=4.4e-08 Score=104.52 Aligned_cols=175 Identities=19% Similarity=0.214 Sum_probs=110.7
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh------------hccccEEEEecCC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN------------QMTRNTGFVTQED 130 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~------------~~~~~i~yv~Q~~ 130 (508)
+..+++++ +.+.+||.++|+|+||+|||||+++|++...++.|.+...|++-.+ .+++.+.++.+-+
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d 228 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD 228 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC
Confidence 35789999 9999999999999999999999999999998888887776654321 1223344444433
Q ss_pred CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH-HHHHHHHHHHHHhhCCCEE
Q 010509 131 VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG-GERKRVSIGQEILINPSLL 209 (508)
Q Consensus 131 ~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG-GerqRv~Ia~aL~~~P~il 209 (508)
. ++.+-..-+ ......+| .+...|-. . ++- .-+++- -|-+| ++. +
T Consensus 229 ~-----~p~~r~~~~-----------~~a~t~AE-~frd~G~~-V---ll~---~DslTr~A~A~R-----Eis-----l 274 (440)
T TIGR01026 229 Q-----SPLLRLKGA-----------YVATAIAE-YFRDQGKD-V---LLL---MDSVTRFAMAQR-----EIG-----L 274 (440)
T ss_pred C-----CHHHHHHHH-----------HHHHHHHH-HHHHCCCC-E---EEE---EeChHHHHHHHH-----HHH-----H
Confidence 2 111111100 00001112 22222321 1 100 001111 11111 111 3
Q ss_pred EEeCC--CCCCCHHHHHHHHHHHHHHHcCCC-------EEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 210 FLDEP--TSGLDSTIAQQILSILLKLANGGR-------TIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 210 lLDEP--tsgLD~~~~~~i~~~L~~l~~~g~-------tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
.+.|| +.|+|+.....+.+++.+....+. ||++.+||..+ ..+|++.-+.+|+++.+.+..+.
T Consensus 275 ~~ge~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~d---pi~d~~~~i~dG~ivLsr~la~~ 346 (440)
T TIGR01026 275 AAGEPPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMNE---PIADSVRGILDGHIVLSRALAQR 346 (440)
T ss_pred hcCCCCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCCc---chhhhhccccceEEEEecchhhC
Confidence 35675 459999999999999999876667 88889999754 46899999999999999886643
No 467
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.70 E-value=4.3e-08 Score=93.00 Aligned_cols=83 Identities=20% Similarity=0.099 Sum_probs=62.3
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-hccccEEEEecCC--CCCCCCCHHHHH
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-QMTRNTGFVTQED--VLSPYLTVTETM 142 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-~~~~~i~yv~Q~~--~l~~~lTv~E~l 142 (508)
..+=+.+.+++|+.++|+||||||||||+++|+|++++..|.|.+.+..-.. ..+..++++.|.+ ...+..|..+.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 93 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLL 93 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHH
Confidence 3444556789999999999999999999999999999999999997753211 2234566666543 346678888888
Q ss_pred HHHHHh
Q 010509 143 VFTALL 148 (508)
Q Consensus 143 ~~~~~l 148 (508)
....+.
T Consensus 94 ~~~lR~ 99 (186)
T cd01130 94 RSALRM 99 (186)
T ss_pred HHHhcc
Confidence 776543
No 468
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.69 E-value=2e-08 Score=106.55 Aligned_cols=173 Identities=17% Similarity=0.156 Sum_probs=108.0
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcc---cEEEECCEeCCh----------hccccEEEEecC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN---GRITYNGKPFSN----------QMTRNTGFVTQE 129 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~---G~I~~~G~~~~~----------~~~~~i~yv~Q~ 129 (508)
+..+++++ +.+.+||.++|+|+||+|||||+++|+|..+++. |.|-.+|+++.. ..+..+++++|+
T Consensus 142 Gi~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d 220 (434)
T PRK07196 142 GVNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPAD 220 (434)
T ss_pred ceeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCC
Confidence 35799999 9999999999999999999999999999887665 344444444321 124479999999
Q ss_pred CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEE
Q 010509 130 DVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLL 209 (508)
Q Consensus 130 ~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~il 209 (508)
+..+..+++.|++.+.+......+ +.|--+++ .+...++.. |+ ++ +
T Consensus 221 ~s~~~rl~a~e~a~~iAEyfr~~g-------~~Vll~~D--sltr~a~A~------RE--------is-----------l 266 (434)
T PRK07196 221 ESPLMRIKATELCHAIATYYRDKG-------HDVLLLVD--SLTRYAMAQ------RE--------IA-----------L 266 (434)
T ss_pred CChhhhHHHHHHHHHHHHHhhhcc-------CCEEEeec--chhHHHhhh------hH--------HH-----------H
Confidence 999999999999987765421100 00000000 011111000 01 11 1
Q ss_pred EEeCC--CCCCCHHHHHHHHHHHHHHHc---CC-CEEEEEecCcchHHH-hhccEEEEEeCCeEEEEc
Q 010509 210 FLDEP--TSGLDSTIAQQILSILLKLAN---GG-RTIVMTIHQPSNMLY-YMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 210 lLDEP--tsgLD~~~~~~i~~~L~~l~~---~g-~tii~s~H~~~~~~~-~~~D~v~lL~~G~iv~~G 270 (508)
.+.|| +.|-.+..-..+-+++.+.-+ .| .|.+.+..-+..++. -.+|.+.-+-||+++.+-
T Consensus 267 ~~ge~P~~~Gyp~svf~~l~~l~ERag~~~~~GSIT~~~tVl~~~dD~~dpi~d~~~~ilDG~ivLsr 334 (434)
T PRK07196 267 SLGEPPATKGYPPSAFSIIPRLAESAGNSSGNGTMTAIYTVLAEGDDQQDPIVDCARAVLDGHIVLSR 334 (434)
T ss_pred hcCCCCcccCcCHHHHHHhHHHHHHhhcCCCCEEeeeeeEEEccCCCCCCchhHhhhhhcceEEEEcH
Confidence 22354 236777776777777777532 22 566766654433322 356777778899998753
No 469
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.68 E-value=7.9e-09 Score=100.91 Aligned_cols=48 Identities=23% Similarity=0.236 Sum_probs=34.2
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHhc-CCCCcccEEEECCE
Q 010509 66 ILKGI-TGMVKPGEMLAMLGPSGCGKTTLLTALGG-RLGRINGRITYNGK 113 (508)
Q Consensus 66 iL~~v-s~~v~~Ge~~ailG~nGsGKSTLL~~L~g-~~~~~~G~I~~~G~ 113 (508)
-|+++ .+-+++|++++|.||+|+|||||...++. ...+.++.+.+...
T Consensus 8 ~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 8 GLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred hHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 35553 56799999999999999999999886652 22233445666554
No 470
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.67 E-value=3.5e-08 Score=103.30 Aligned_cols=60 Identities=20% Similarity=0.287 Sum_probs=55.5
Q ss_pred CccCHHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 186 RGVSGGERKRVSIGQEILI---------NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~---------~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
..+|.||+|++.||..|+. +|+|++||||+++||+..+..+++.|++. |.++++|+|++.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~---~~qv~it~~~~~ 342 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL---GVQVFVTAISLD 342 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc---CCEEEEEecChh
Confidence 3589999999999999999 99999999999999999999999999764 679999999875
No 471
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.62 E-value=1.1e-07 Score=101.18 Aligned_cols=83 Identities=18% Similarity=0.263 Sum_probs=66.5
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECC---
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG--- 112 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G--- 112 (508)
+..++.++++..+.. +..+++.++ .+.+||.++|+||||+|||||+++|+++..++.|.|.+.|
T Consensus 137 p~~~~r~~v~~~l~T------------Gi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGerg 203 (450)
T PRK06002 137 PPAMTRARVETGLRT------------GVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERG 203 (450)
T ss_pred CCCeEeecceEEcCC------------CcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCC
Confidence 445777888877642 356888886 8999999999999999999999999999999999998865
Q ss_pred EeCCh--------hccccEEEEecCCC
Q 010509 113 KPFSN--------QMTRNTGFVTQEDV 131 (508)
Q Consensus 113 ~~~~~--------~~~~~i~yv~Q~~~ 131 (508)
+++.. ..++.+++|+|.+.
T Consensus 204 rev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 204 REVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred ccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 44421 12457999999765
No 472
>PRK14079 recF recombination protein F; Provisional
Probab=98.61 E-value=8.2e-08 Score=100.01 Aligned_cols=76 Identities=21% Similarity=0.230 Sum_probs=63.5
Q ss_pred ccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccE
Q 010509 187 GVSGGERKRVSIGQEIL---------INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~---------~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~ 257 (508)
-+|+||+|++.+|..|+ .+|++++||||+++||...+..+.+.|.+. ..++|.+|+.+ ..+|+
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~---~q~~it~t~~~-----~~~~~ 334 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASL---PQAIVAGTEAP-----PGAAL 334 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcC---CcEEEEcCCCC-----CCCce
Confidence 47999999999999998 899999999999999999999999888654 24666666544 45899
Q ss_pred EEEEeCCeEEEEc
Q 010509 258 VLLLSEGYPLYSG 270 (508)
Q Consensus 258 v~lL~~G~iv~~G 270 (508)
++.+.+|++.-..
T Consensus 335 ~~~~~~~~~~~~~ 347 (349)
T PRK14079 335 TLRIEAGVFTPEA 347 (349)
T ss_pred EEEEeccEecCCC
Confidence 9999999875443
No 473
>TIGR01248 drrC daunorubicin resistance protein C. The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters.
Probab=98.55 E-value=1.6e-06 Score=79.76 Aligned_cols=126 Identities=9% Similarity=0.006 Sum_probs=89.7
Q ss_pred hhhhhhhhcCCCCcChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010509 315 EQKMLEKEIPSGMYRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTA--SNFFETLFVLLFSVLVSQGLGLAIGA 392 (508)
Q Consensus 315 er~v~~rE~~~~~Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~--~~f~~f~~~~~l~~~~~~s~~~~i~~ 392 (508)
|+..+.|-+..-. +.+.++++|++...-..++..++..++.+.+ |.+... ...+.+++...+.......++..++.
T Consensus 17 ~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~~-g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~~a~ 94 (152)
T TIGR01248 17 EIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALAL-GFRFRNGVAAALLFLLIPSIFGIAFAALVMAMAL 94 (152)
T ss_pred HhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554444 6788999999999988888887777777544 877653 22333444444445555566677765
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHH
Q 010509 393 MVMEQKSATILGSIIMQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLL 443 (508)
Q Consensus 393 ~~~~~~~a~~~~~~~~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~ 443 (508)
..++.+..+ ...++..|++..+|.+.| ++|.|++|+.+++|+.|+.|++=
T Consensus 95 ~~~~~~~~~-~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 95 RKEGRFAME-ALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HcCCHHHHH-HHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 556655433 457777888888888888 99999999999999999999874
No 474
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.55 E-value=7.4e-08 Score=91.99 Aligned_cols=112 Identities=16% Similarity=0.211 Sum_probs=66.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHH-hcCCCCCCHH
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTAL-LQLPNSFTEK 157 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~-l~~~~~~~~~ 157 (508)
+++|.||||||||||.++|++.+ ..|. +.++++|+.. ..++..+....... ...|...
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~---------------~~v~~~D~~~-~~~~~~~~~~~~~~~~~~~~~~--- 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPK---------------VVIISQDSYY-KDLSHEELEERKNNNYDHPDAF--- 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCC---------------eEEEEecccc-cccccccHHHhccCCCCCCCcc---
Confidence 57999999999999999999986 2222 3344444332 22333332221111 1111111
Q ss_pred HHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 010509 158 EKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDS 220 (508)
Q Consensus 158 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~ 220 (508)
..+...+.++.+...+..+... ...|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 60 -~~~~~~~~l~~l~~~~~~~~p~-----~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 -DFDLLISHLQDLKNGKSVEIPV-----YDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred -cHHHHHHHHHHHHCCCCEeccc-----cccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 1233445666665544333333 3678888776555 5678999999999999986
No 475
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.54 E-value=2.5e-07 Score=107.81 Aligned_cols=78 Identities=29% Similarity=0.373 Sum_probs=69.5
Q ss_pred CCCccCHHHHHHHHHHHHHh------hC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhc
Q 010509 184 LTRGVSGGERKRVSIGQEIL------IN--PSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMF 255 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~------~~--P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~ 255 (508)
.+..|||||+-.++||.+|+ .+ -+++||||||..||+.+...++++|..+...+.+|+++||+. ++...+
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVE--ELKERA 889 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChH--HHHHhC
Confidence 56799999999998888775 35 599999999999999999999999999998899999999996 466789
Q ss_pred cEEEEEeC
Q 010509 256 HKVLLLSE 263 (508)
Q Consensus 256 D~v~lL~~ 263 (508)
|.++.++.
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99998874
No 476
>PRK15066 inner membrane transport permease; Provisional
Probab=98.53 E-value=5.1e-06 Score=82.71 Aligned_cols=153 Identities=12% Similarity=0.142 Sum_probs=109.8
Q ss_pred cChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010509 328 YRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLAIGAMVMEQKSATILGSII 407 (508)
Q Consensus 328 Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~ 407 (508)
-+...+.+++++...-..++..++...+.+...|.+.. ....+....++...+....|+++|.+.++.+.+..+.+++
T Consensus 101 ~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl~~a~~~~~~~~~~~i~~~~ 178 (257)
T PRK15066 101 VPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGLINAVFAKSFDDISIIPTFV 178 (257)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 46777899999987766666655555555444466543 2233333333333434445888998889988888899999
Q ss_pred HHHHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCCCCccccCCcccceeeCCCcchhHHHHH
Q 010509 408 MQLFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDSGGLCLVGEHPTIKKVGLHRKYYSVIAL 485 (508)
Q Consensus 408 ~~~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~~il 485 (508)
+.|++..||.+.| ++|.|++|+.+++|+.|..|++=..-+++. ....|.+++++
T Consensus 179 ~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~g~~------------------------~~~~~~~l~~l 234 (257)
T PRK15066 179 LTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFLGIS------------------------DVPLWLAFAVL 234 (257)
T ss_pred HHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHcCCC------------------------CccHHHHHHHH
Confidence 9999999999988 999999999999999999998764433210 01246788889
Q ss_pred HHHHHHHHHHHHHHHHhhccc
Q 010509 486 AIMLVGYRLIAYIALMRIGAT 506 (508)
Q Consensus 486 ~~~~~~~~~~~~~~l~~~~~~ 506 (508)
+++.+++..++....|+.++-
T Consensus 235 ~~~~~v~~~la~~~~~r~~~~ 255 (257)
T PRK15066 235 LVFIVVLYLLAWYLLERGRGL 255 (257)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 999998888888887765543
No 477
>TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein. Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis.
Probab=98.53 E-value=5.2e-06 Score=82.37 Aligned_cols=147 Identities=14% Similarity=0.206 Sum_probs=107.3
Q ss_pred cChHHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 010509 328 YRLSAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLAIGAMVMEQKSATILGSII 407 (508)
Q Consensus 328 Y~~~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~~~~~~~~~a~~~~~~~ 407 (508)
.+...+.+++++...-..++..+++..+.+. .|.+.....++......++..++..++|+++|+++++.+.+..+.+++
T Consensus 99 ~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~lgl~la~l~~~~~~~~~i~~~~ 177 (253)
T TIGR03861 99 LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGALGLALSNLIRQLENFAGVMNFV 177 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3677789999999987777766555544443 366655444554455556667778899999999999999888888899
Q ss_pred HHHHHHhhccccC--Cc---hhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCCCCccccCCcccceeeCCCcchhHH
Q 010509 408 MQLFVLAGGYYVQ--NV---PSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDSGGLCLVGEHPTIKKVGLHRKYYSV 482 (508)
Q Consensus 408 ~~~~~l~~Gf~i~--~i---p~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~ 482 (508)
+.+++..+|.+.| .+ |.|++|+.+++|+.|..|++=..-+ +. ..|..+
T Consensus 178 ~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~~~-g~--------------------------~~~~~~ 230 (253)
T TIGR03861 178 IFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFALY-GQ--------------------------LNLPAL 230 (253)
T ss_pred HHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHHHh-CC--------------------------cchhHH
Confidence 9999999999876 44 8999999999999999998754322 21 013455
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 010509 483 IALAIMLVGYRLIAYIALMR 502 (508)
Q Consensus 483 ~il~~~~~~~~~~~~~~l~~ 502 (508)
++++++.+++..++....|+
T Consensus 231 ~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 231 GWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 66667777777766665554
No 478
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.52 E-value=5.4e-07 Score=107.57 Aligned_cols=163 Identities=18% Similarity=0.230 Sum_probs=92.0
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC-CCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHH
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL-GRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTAL 147 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~-~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~ 147 (508)
=+++..+++++++|.|++|+|||||++++++.. ...+|.+.+++..+.... . .+-.++... .+...
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~-~--~~~~~~~~~-------~~~~~--- 265 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSM-E--IYSSANPDD-------YNMKL--- 265 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccch-h--hcccccccc-------cchhH---
Confidence 356778899999999999999999999998866 456899988753221100 0 000010000 00000
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 010509 148 LQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL 227 (508)
Q Consensus 148 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~ 227 (508)
...++.+.++++..++. +. .+ ++.|+| |..++-+|+||+- |.. ..+
T Consensus 266 ---------~l~~~~l~~il~~~~~~------~~-----~~-~~~~~~------L~~krvLLVLDdv----~~~---~~l 311 (1153)
T PLN03210 266 ---------HLQRAFLSEILDKKDIK------IY-----HL-GAMEER------LKHRKVLIFIDDL----DDQ---DVL 311 (1153)
T ss_pred ---------HHHHHHHHHHhCCCCcc------cC-----CH-HHHHHH------HhCCeEEEEEeCC----CCH---HHH
Confidence 01122334444443331 11 22 566666 3355667888983 433 334
Q ss_pred HHHHHHH---cCCCEEEEEecCcchHHHhh-ccEEEEEeCCeEEEEcChhhHHHHHHhcCCC
Q 010509 228 SILLKLA---NGGRTIVMTIHQPSNMLYYM-FHKVLLLSEGYPLYSGEASGAMNYFASIGYC 285 (508)
Q Consensus 228 ~~L~~l~---~~g~tii~s~H~~~~~~~~~-~D~v~lL~~G~iv~~G~~~~~~~~f~~~g~~ 285 (508)
+.|+... ..|.+||+|||+... +... +|+++-+. .-+.+++.+.|....|.
T Consensus 312 ~~L~~~~~~~~~GsrIIiTTrd~~v-l~~~~~~~~~~v~------~l~~~ea~~LF~~~Af~ 366 (1153)
T PLN03210 312 DALAGQTQWFGSGSRIIVITKDKHF-LRAHGIDHIYEVC------LPSNELALEMFCRSAFK 366 (1153)
T ss_pred HHHHhhCccCCCCcEEEEEeCcHHH-HHhcCCCeEEEec------CCCHHHHHHHHHHHhcC
Confidence 4444432 358999999999753 3332 56665543 12446788888775543
No 479
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.52 E-value=2.4e-06 Score=98.35 Aligned_cols=48 Identities=21% Similarity=0.259 Sum_probs=43.8
Q ss_pred HhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHcCCCEEEEEecCcch
Q 010509 202 ILINPSLLFLDEPTSGLD-STIAQQILSILLKLANGGRTIVMTIHQPSN 249 (508)
Q Consensus 202 L~~~P~illLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tii~s~H~~~~ 249 (508)
+..+|.++++|||...|| +..+..+.+.++++++.|..++++||+++.
T Consensus 639 ~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 687 (800)
T PRK13898 639 LDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVED 687 (800)
T ss_pred hcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 456899999999999999 888999999999998889999999999864
No 480
>COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms]
Probab=98.50 E-value=5.2e-06 Score=81.97 Aligned_cols=151 Identities=17% Similarity=0.275 Sum_probs=115.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHH
Q 010509 331 SAYFMSRIISDLPIKLVIPTVFVTITYWMAGLKPTASNFFETLFVLLFSVLVSQGLGLAIG-AMVMEQKSATILGSIIMQ 409 (508)
Q Consensus 331 ~~y~~a~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~~~~i~-~~~~~~~~a~~~~~~~~~ 409 (508)
..+++++.+...-...+...+...++.+..| ......++.+.....+..+...++|.+++ ....+.+.+..++.++..
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~ 209 (286)
T COG0842 131 LFILLGKIVPYLVVASLIAGLVLLVIAFLLG-VPFLGSLLLLLLLLLLLLLATVALGLLLSTFAKSQLQCASAVGNLLIL 209 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 4566777777766666666666666666667 33334555666666777777788888666 366778888899989999
Q ss_pred HHHHhhccccC--CchhhHHHhhhhCHHHHHHHHHHHHHhCCCCcccCCCCCCccccCCcccceeeCCCcchhHHHHHHH
Q 010509 410 LFVLAGGYYVQ--NVPSFIAWIEYLSIGHHTYKLLLGSQYNYNETYPCGDSGGLCLVGEHPTIKKVGLHRKYYSVIALAI 487 (508)
Q Consensus 410 ~~~l~~Gf~i~--~ip~~~~W~~yiS~~~y~~eal~~nef~~~~~~~c~~~~~~c~~~~~~~~~~~~~~~~~~~~~il~~ 487 (508)
++..++|.+.| .+|.|++|+.++.|..|+.+++-.....+. .. ...|.+++++++
T Consensus 210 ~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~-~~----------------------~~~~~~~~~l~~ 266 (286)
T COG0842 210 PLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGW-RN----------------------DGIWISLLILLL 266 (286)
T ss_pred HHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCC-ch----------------------hhHHHHHHHHHH
Confidence 99999999999 999999999999999999999887666542 10 025778899999
Q ss_pred HHHHHHHHHHHHHHhhcc
Q 010509 488 MLVGYRLIAYIALMRIGA 505 (508)
Q Consensus 488 ~~~~~~~~~~~~l~~~~~ 505 (508)
+.+++.+++...+|+.++
T Consensus 267 ~~~v~~~~~~~~~~~~~~ 284 (286)
T COG0842 267 FAVVFLLLGLLLLRRRRK 284 (286)
T ss_pred HHHHHHHHHHHHHHHhhh
Confidence 999999999999887554
No 481
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.46 E-value=4e-07 Score=105.04 Aligned_cols=138 Identities=20% Similarity=0.229 Sum_probs=86.4
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
..+=+|+++. +.+.++.|.|||++||||+||.++-..- +.+.=+|||-+..- +.+.+.
T Consensus 595 ~~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~i----------------lAq~G~~VPa~~a~---i~~~d~-- 652 (854)
T PRK05399 595 PFVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVL----------------LAQIGSFVPAESAR---IGIVDR-- 652 (854)
T ss_pred ceEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHH----------------HHhcCCceeccceE---ecccCe--
Confidence 4577788888 7788999999999999999999875310 01111233322111 111111
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh--hCCCEEEEeCC---CCCC
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL--INPSLLFLDEP---TSGL 218 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~--~~P~illLDEP---tsgL 218 (508)
++..+|-. |.. .++.|.-+.....++..|- ++++++++||| |+.+
T Consensus 653 ----------------------I~triga~---d~i-----~~g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~ 702 (854)
T PRK05399 653 ----------------------IFTRIGAS---DDL-----ASGRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTY 702 (854)
T ss_pred ----------------------eeeccCcc---ccc-----ccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcc
Confidence 11111111 111 1367777777777776664 48999999999 8889
Q ss_pred CHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccE
Q 010509 219 DSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 219 D~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~ 257 (508)
|..+ ....+++.+.+. |.+++++||.. ++.+++++
T Consensus 703 dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 703 DGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred hhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 9444 455566666655 68999999994 45666664
No 482
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.45 E-value=1.1e-07 Score=89.55 Aligned_cols=65 Identities=17% Similarity=0.339 Sum_probs=47.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh--cc-ccEEEEecCCCCCCCCCHHHHHHH
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ--MT-RNTGFVTQEDVLSPYLTVTETMVF 144 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~--~~-~~i~yv~Q~~~l~~~lTv~E~l~~ 144 (508)
+||+++|+|+||||||||+++|++++++ +.++|.++... .+ ...++.+|+....+..++.++..+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~ 69 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASY 69 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHH
Confidence 6999999999999999999999998866 57888776431 22 235666666555555555555554
No 483
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.40 E-value=4e-07 Score=109.66 Aligned_cols=60 Identities=28% Similarity=0.411 Sum_probs=53.4
Q ss_pred CCccCHHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCc
Q 010509 185 TRGVSGGERKRVS----IGQE--------ILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247 (508)
Q Consensus 185 ~~~LSGGerqRv~----Ia~a--------L~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~ 247 (508)
..+||||||||++ +|++ +..+|++++|||||+|||+.+...++++++++ |.++|+++|..
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l---~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL---DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh---CCCEEEEccch
Confidence 4689999999996 5644 55899999999999999999999999999988 78999999874
No 484
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.33 E-value=1.9e-05 Score=91.13 Aligned_cols=47 Identities=26% Similarity=0.292 Sum_probs=42.7
Q ss_pred hhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHHHcCCCEEEEEecCcch
Q 010509 203 LINPSLLFLDEPTSGLD-STIAQQILSILLKLANGGRTIVMTIHQPSN 249 (508)
Q Consensus 203 ~~~P~illLDEPtsgLD-~~~~~~i~~~L~~l~~~g~tii~s~H~~~~ 249 (508)
-.+|+++++|||+.+|| +..+..+.+.++.+++.|.+++++||++..
T Consensus 633 ~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d 680 (811)
T PRK13873 633 DGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLAD 680 (811)
T ss_pred cCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHH
Confidence 45899999999999999 788999999999998889999999999863
No 485
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.31 E-value=7.5e-07 Score=87.29 Aligned_cols=74 Identities=19% Similarity=0.303 Sum_probs=53.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCcccE----EEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhc
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRINGR----ITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQ 149 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~----I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~ 149 (508)
.+..+++|.||||||||||.+.|++++++.+|. |.+++........+..+++++.+ .++.+++.+.+.+...++
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~~~~~~g~~~~~~-~~~~~d~~~~~~~l~~l~ 108 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNAVLDAHGLRPRKG-APETFDVAGLAALLRRLR 108 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHHHHHhcccccccC-CCCCCCHHHHHHHHHHHH
Confidence 457899999999999999999999999988898 55555433333334467776643 345677777776655544
No 486
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.31 E-value=4.9e-06 Score=83.23 Aligned_cols=38 Identities=29% Similarity=0.460 Sum_probs=33.7
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+.|+++.+-+++|+++.|.|++|+|||||+..++...
T Consensus 17 ~~~Ld~~~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~ 54 (271)
T cd01122 17 FPVLNKLTKGLRKGELIILTAGTGVGKTTFLREYALDL 54 (271)
T ss_pred cceeeeeeEEEcCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45788988899999999999999999999999887643
No 487
>PRK06315 type III secretion system ATPase; Provisional
Probab=98.29 E-value=1.8e-06 Score=91.98 Aligned_cols=108 Identities=16% Similarity=0.200 Sum_probs=71.0
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-CcccEEEECC---EeCCh----hc---cccEEEE-----e
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-RINGRITYNG---KPFSN----QM---TRNTGFV-----T 127 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-~~~G~I~~~G---~~~~~----~~---~~~i~yv-----~ 127 (508)
..+++++ +.+.+||.++|+|+||+|||||+++|+|..+ ...|.|.+.| +++.+ .+ ....+++ +
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~~g~~~svvvvats~ 230 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGEEGMKRSVIVVSTSD 230 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHhcCCceEEEEEeCCC
Confidence 5689998 9999999999999999999999999999874 3446777755 44421 11 1234555 7
Q ss_pred cCCC--CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC
Q 010509 128 QEDV--LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS 173 (508)
Q Consensus 128 Q~~~--l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~ 173 (508)
|++. +.|.+ +...+....+.+........+...++.+++++++|.
T Consensus 231 q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 231 QSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 8753 34433 444443333222111113345667888899999884
No 488
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.27 E-value=2.2e-06 Score=95.72 Aligned_cols=110 Identities=24% Similarity=0.369 Sum_probs=72.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCCCcc--------cEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHH
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLGRIN--------GRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTAL 147 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~--------G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~ 147 (508)
..+.++|.||||+|||||.+++.+..++.. +-|.++|..+....+. + ++-.+.
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~----------------i-~~~llg-- 234 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE----------------V-TNPLLG-- 234 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH----------------H-hHHhcC--
Confidence 345799999999999999999998764433 3355655433100000 0 011111
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 010509 148 LQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQIL 227 (508)
Q Consensus 148 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~ 227 (508)
.. .+...+.+++.++..|+.+.++..+. .+||| +||+|| +..||+..+..++
T Consensus 235 -----~~-~~~~~~~a~~~l~~~gl~~~~~g~v~-----~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll 286 (615)
T TIGR02903 235 -----SV-HDPIYQGARRDLAETGVPEPKTGLVT-----DAHGG----------------VLFIDE-IGELDPLLQNKLL 286 (615)
T ss_pred -----Cc-cHHHHHHHHHHHHHcCCCchhcCchh-----hcCCC----------------eEEEec-cccCCHHHHHHHH
Confidence 01 11112334556788898877665553 78888 999999 7999999999999
Q ss_pred HHHHH
Q 010509 228 SILLK 232 (508)
Q Consensus 228 ~~L~~ 232 (508)
+.|++
T Consensus 287 ~~Le~ 291 (615)
T TIGR02903 287 KVLED 291 (615)
T ss_pred HHHhh
Confidence 99875
No 489
>PRK01889 GTPase RsgA; Reviewed
Probab=98.26 E-value=1.5e-06 Score=90.82 Aligned_cols=106 Identities=19% Similarity=0.265 Sum_probs=70.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC-hhccccEEEEecCCCCCCCCCHHHHHHHH
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS-NQMTRNTGFVTQEDVLSPYLTVTETMVFT 145 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~-~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~ 145 (508)
++.+.-.+++|+.++++|+||+|||||+|+|+|...+..|+|.+++.... ...++.+.+++|+..++++ ....++.+.
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~Dt-pG~~~~~l~ 263 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDT-PGMRELQLW 263 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcchhhhccEEEecCCCeecCC-Cchhhhccc
Confidence 44555567899999999999999999999999999999999999875432 2345678999998877764 344444332
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 010509 146 ALLQLPNSFTEKEKIKCAEAVMTELGLSECKNS 178 (508)
Q Consensus 146 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 178 (508)
. +.. .-...-....++.+.+...+|.+.
T Consensus 264 ~----~~~-~l~~~f~~~~~~~~~c~f~~c~h~ 291 (356)
T PRK01889 264 D----AED-GVEETFSDIEELAAQCRFRDCAHE 291 (356)
T ss_pred C----chh-hHHHhHHHHHHHHccCCCCCCCCC
Confidence 1 000 001111234455666666666553
No 490
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.24 E-value=3.4e-06 Score=74.24 Aligned_cols=55 Identities=20% Similarity=0.276 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-----CCCEEEEEecCcc
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-----GGRTIVMTIHQPS 248 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-----~g~tii~s~H~~~ 248 (508)
++..........++.++++||.-.. +......+.+.+..... .+.++|+++++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 3444455566778999999998765 56667788888888753 4788999988654
No 491
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.23 E-value=2.7e-06 Score=91.59 Aligned_cols=62 Identities=21% Similarity=0.274 Sum_probs=43.9
Q ss_pred hCCCEEEEeCCCCC----CC-----HHHHHHHHHHHHHHHc-CCCEEEEEecCcch-------HHHhhccEEEEEeCCe
Q 010509 204 INPSLLFLDEPTSG----LD-----STIAQQILSILLKLAN-GGRTIVMTIHQPSN-------MLYYMFHKVLLLSEGY 265 (508)
Q Consensus 204 ~~P~illLDEPtsg----LD-----~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~-------~~~~~~D~v~lL~~G~ 265 (508)
.+|+++++|.-++= ++ .....+++..|.++++ .|.|++++.|...+ .+.+++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 47999999987652 11 2234556667777765 59999999996542 2567899999998654
No 492
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.23 E-value=1.5e-05 Score=75.16 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=44.3
Q ss_pred HHHHHHHHcCCC-cccccccCCCCCCccCHHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC
Q 010509 162 CAEAVMTELGLS-ECKNSLIGGPLTRGVSGGERKRVS--IGQEILI-NPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236 (508)
Q Consensus 162 ~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerqRv~--Ia~aL~~-~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~ 236 (508)
.+.+.++..++. -...+++ ..+|+||+|++. +++.+-. +++++ |+|++|.....++.+.|.++.++
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~-----Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKA-----DKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred HHHHHHHHcCCcEEEEEECc-----ccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhcC
Confidence 344556666653 1222233 268999999987 5544433 34443 99999999999999999988754
No 493
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.22 E-value=1.3e-06 Score=82.67 Aligned_cols=50 Identities=28% Similarity=0.488 Sum_probs=37.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh----ccccEEEEecC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ----MTRNTGFVTQE 129 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~----~~~~i~yv~Q~ 129 (508)
|++++|+||||||||||+++|++...+ .+.+++..+... .++.+++++|+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQE 55 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHH
Confidence 789999999999999999999998764 577777765431 12345555554
No 494
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=98.20 E-value=1.7e-06 Score=67.06 Aligned_cols=35 Identities=40% Similarity=0.647 Sum_probs=29.0
Q ss_pred eeceEEEEeC-CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 67 LKGITGMVKP-GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 67 L~~vs~~v~~-Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++.++++.+ |++++|.|||||||||||++|.=.+
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456777775 5799999999999999999998655
No 495
>PRK08149 ATP synthase SpaL; Validated
Probab=98.19 E-value=3e-06 Score=89.91 Aligned_cols=68 Identities=19% Similarity=0.287 Sum_probs=56.4
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcc---cEEEECCEeCCh--------hccccEEEEecCCC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN---GRITYNGKPFSN--------QMTRNTGFVTQEDV 131 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~---G~I~~~G~~~~~--------~~~~~i~yv~Q~~~ 131 (508)
+.++++++ +.+.+||.++|+|+||+|||||+++|++...++. |.|-.+|+++.. ...+++++|+....
T Consensus 138 Gi~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd 216 (428)
T PRK08149 138 GVRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSD 216 (428)
T ss_pred CcEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCC
Confidence 45799999 9999999999999999999999999999887765 899999988743 12356788876543
No 496
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.19 E-value=2.8e-06 Score=76.96 Aligned_cols=43 Identities=14% Similarity=0.160 Sum_probs=32.6
Q ss_pred ccCHHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 010509 187 GVSGGERKRVSIGQEI-----LINPSLLFLDEPTSGLDSTIAQQILSILLKL 233 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL-----~~~P~illLDEPtsgLD~~~~~~i~~~L~~l 233 (508)
.++++++++.....+. ...|+++ |+|++|.....++++.|.++
T Consensus 122 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 122 KLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred cCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 5788888877666553 2345555 99999999999999988764
No 497
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.17 E-value=1.6e-06 Score=87.94 Aligned_cols=72 Identities=14% Similarity=0.194 Sum_probs=52.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCCC--CcccEEEECCEeC---ChhccccEEEEecCCCCCCCCCHHHHHHHHHHhc
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRLG--RINGRITYNGKPF---SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQ 149 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~~--~~~G~I~~~G~~~---~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~ 149 (508)
=.++||.||||||||||+++|.+++. +.+|+|.+-+.+- +...++..++. |+..+++.+++.+.+.+...++
T Consensus 62 p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~~~l~~~g~~-~~~g~P~s~D~~~l~~~L~~Lk 138 (290)
T TIGR00554 62 PYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLM-KKKGFPESYDMHRLVKFLSDLK 138 (290)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccHHHHHHcCCc-cccCCChhccHHHHHHHHHHHH
Confidence 36999999999999999999999875 6688877755442 22333345544 6666778888888887766554
No 498
>PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A.
Probab=98.16 E-value=4.5e-06 Score=69.85 Aligned_cols=47 Identities=32% Similarity=0.488 Sum_probs=36.9
Q ss_pred CccCHHHH-HHHHHHHHHh------h------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 010509 186 RGVSGGER-KRVSIGQEIL------I------NPSLLFLDEPTSGLDSTIAQQILSILLK 232 (508)
Q Consensus 186 ~~LSGGer-qRv~Ia~aL~------~------~P~illLDEPtsgLD~~~~~~i~~~L~~ 232 (508)
.++||||| ..+.++.+++ . .|++++||||+++||+.....+++.|++
T Consensus 31 ~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 31 GTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 48999999 5555544432 2 3799999999999999999999999875
No 499
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.10 E-value=2.6e-06 Score=87.66 Aligned_cols=71 Identities=14% Similarity=0.163 Sum_probs=54.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----------hccccEEEEecCCCCCCCCCHHHHHHH
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----------QMTRNTGFVTQEDVLSPYLTVTETMVF 144 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----------~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 144 (508)
++|++++++||||+||||++..|++.+.+..|+|.+.+.|..+ ..++.+.+++|.....|..++.+++..
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~ 191 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQA 191 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHH
Confidence 5799999999999999999999999887778899988877521 124468888887655565566666654
Q ss_pred H
Q 010509 145 T 145 (508)
Q Consensus 145 ~ 145 (508)
.
T Consensus 192 ~ 192 (318)
T PRK10416 192 A 192 (318)
T ss_pred H
Confidence 3
No 500
>PF00488 MutS_V: MutS domain V C-terminus.; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B ....
Probab=98.10 E-value=5.2e-05 Score=74.75 Aligned_cols=46 Identities=24% Similarity=0.299 Sum_probs=34.5
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHHHc-CCCEEEEEecCcc
Q 010509 203 LINPSLLFLDEPTSGLDSTIAQQILS-ILLKLAN-GGRTIVMTIHQPS 248 (508)
Q Consensus 203 ~~~P~illLDEPtsgLD~~~~~~i~~-~L~~l~~-~g~tii~s~H~~~ 248 (508)
+++..++|+||+-.|=++.....+.. .++.+.+ .+..++++||..+
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~ 167 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHE 167 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GG
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccch
Confidence 45678999999999999999887654 4555776 4889999999975
Done!