Query 010509
Match_columns 508
No_of_seqs 438 out of 3431
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 08:20:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010509.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010509hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 7.8E-53 2.7E-57 434.9 29.2 222 37-276 23-252 (366)
2 3tif_A Uncharacterized ABC tra 100.0 2.4E-52 8.3E-57 408.9 28.3 222 38-275 1-232 (235)
3 1b0u_A Histidine permease; ABC 100.0 3.5E-52 1.2E-56 414.2 29.2 217 38-276 6-241 (262)
4 3rlf_A Maltose/maltodextrin im 100.0 3.2E-52 1.1E-56 432.8 30.1 218 38-277 3-223 (381)
5 3gfo_A Cobalt import ATP-bindi 100.0 3.2E-52 1.1E-56 416.9 29.1 220 37-277 6-233 (275)
6 2olj_A Amino acid ABC transpor 100.0 5E-52 1.7E-56 413.0 29.8 217 38-276 24-247 (263)
7 3fvq_A Fe(3+) IONS import ATP- 100.0 1.9E-52 6.6E-57 431.6 27.1 218 38-277 4-228 (359)
8 1vpl_A ABC transporter, ATP-bi 100.0 1.4E-51 4.8E-56 408.4 29.1 220 37-278 14-236 (256)
9 2pcj_A ABC transporter, lipopr 100.0 1.5E-51 5E-56 400.5 28.2 212 38-272 4-223 (224)
10 1z47_A CYSA, putative ABC-tran 100.0 1.9E-51 6.5E-56 424.2 29.4 221 36-277 12-235 (355)
11 1g6h_A High-affinity branched- 100.0 1.3E-51 4.5E-56 408.9 25.7 218 38-274 7-239 (257)
12 2it1_A 362AA long hypothetical 100.0 3.8E-51 1.3E-55 423.2 29.3 218 38-277 3-223 (362)
13 2yyz_A Sugar ABC transporter, 100.0 2.8E-51 9.6E-56 423.7 27.9 218 38-277 3-223 (359)
14 1g29_1 MALK, maltose transport 100.0 8.8E-51 3E-55 422.3 30.6 218 38-277 3-229 (372)
15 4g1u_C Hemin import ATP-bindin 100.0 3.3E-51 1.1E-55 407.9 26.1 216 37-276 10-236 (266)
16 1ji0_A ABC transporter; ATP bi 100.0 4E-51 1.4E-55 401.5 26.1 216 38-276 6-227 (240)
17 1oxx_K GLCV, glucose, ABC tran 100.0 4.2E-51 1.5E-55 422.1 26.6 218 38-277 3-230 (353)
18 1v43_A Sugar-binding transport 100.0 6.2E-51 2.1E-55 423.0 27.2 218 38-277 11-231 (372)
19 3d31_A Sulfate/molybdate ABC t 100.0 2E-50 6.7E-55 416.0 25.4 213 38-276 1-216 (348)
20 2onk_A Molybdate/tungstate ABC 100.0 2.8E-50 9.5E-55 395.4 24.4 211 39-276 2-215 (240)
21 2d2e_A SUFC protein; ABC-ATPas 100.0 5.5E-50 1.9E-54 395.6 24.7 217 38-273 3-229 (250)
22 2yz2_A Putative ABC transporte 100.0 1.1E-49 3.8E-54 396.9 25.8 222 38-277 2-227 (266)
23 2ihy_A ABC transporter, ATP-bi 100.0 5.4E-50 1.9E-54 401.7 22.5 221 37-276 20-251 (279)
24 2zu0_C Probable ATP-dependent 100.0 9.4E-49 3.2E-53 390.5 28.2 229 38-285 20-261 (267)
25 2nq2_C Hypothetical ABC transp 100.0 4.5E-48 1.5E-52 382.6 28.0 211 38-276 4-216 (253)
26 2ixe_A Antigen peptide transpo 100.0 5.7E-49 1.9E-53 392.9 21.2 218 38-277 16-245 (271)
27 2ff7_A Alpha-hemolysin translo 100.0 1.8E-48 6.1E-53 384.2 24.1 216 37-276 6-231 (247)
28 2qi9_C Vitamin B12 import ATP- 100.0 2.4E-48 8.2E-53 383.7 23.7 207 38-276 4-221 (249)
29 3nh6_A ATP-binding cassette SU 100.0 3.2E-48 1.1E-52 393.2 25.2 215 37-277 52-277 (306)
30 1mv5_A LMRA, multidrug resista 100.0 2.5E-48 8.7E-53 382.1 19.8 215 39-277 2-226 (243)
31 1sgw_A Putative ABC transporte 100.0 4.6E-48 1.6E-52 373.3 16.9 203 36-266 8-210 (214)
32 2pjz_A Hypothetical protein ST 100.0 3.9E-47 1.3E-51 377.8 23.4 211 38-277 1-215 (263)
33 2ghi_A Transport protein; mult 100.0 1.1E-46 3.8E-51 374.1 23.3 215 38-277 17-242 (260)
34 3gd7_A Fusion complex of cysti 100.0 2.8E-46 9.7E-51 390.3 18.4 215 37-277 18-242 (390)
35 2pze_A Cystic fibrosis transme 100.0 1.6E-45 5.5E-50 359.1 22.0 204 38-276 6-217 (229)
36 2cbz_A Multidrug resistance-as 100.0 2.7E-45 9.4E-50 359.3 21.7 211 38-277 3-217 (237)
37 2yl4_A ATP-binding cassette SU 100.0 1.3E-44 4.5E-49 398.4 24.1 218 39-277 342-570 (595)
38 3b60_A Lipid A export ATP-bind 100.0 1.4E-44 4.9E-49 397.1 23.3 216 38-277 341-567 (582)
39 3b5x_A Lipid A export ATP-bind 100.0 1.5E-44 5E-49 397.1 23.2 217 37-277 340-567 (582)
40 4a82_A Cystic fibrosis transme 100.0 1.4E-44 4.9E-49 396.8 22.3 216 37-277 338-564 (578)
41 3qf4_A ABC transporter, ATP-bi 100.0 2E-44 6.8E-49 396.2 22.4 216 37-277 340-566 (587)
42 3qf4_B Uncharacterized ABC tra 100.0 4E-44 1.4E-48 394.7 18.7 214 38-277 354-578 (598)
43 2bbs_A Cystic fibrosis transme 100.0 8E-43 2.7E-47 351.4 19.3 199 38-276 40-246 (290)
44 4f4c_A Multidrug resistance pr 100.0 4.4E-42 1.5E-46 407.3 22.5 218 38-277 1076-1304(1321)
45 4f4c_A Multidrug resistance pr 100.0 3.6E-41 1.2E-45 399.6 21.5 215 38-276 415-640 (1321)
46 3g5u_A MCG1178, multidrug resi 100.0 1.4E-40 4.9E-45 393.6 21.8 216 38-277 387-613 (1284)
47 3g5u_A MCG1178, multidrug resi 100.0 6E-40 2.1E-44 388.2 24.4 218 38-277 1030-1258(1284)
48 3bk7_A ABC transporter ATP-bin 100.0 1.5E-39 5.3E-44 357.6 22.7 206 36-277 355-563 (607)
49 1yqt_A RNAse L inhibitor; ATP- 100.0 1.6E-39 5.6E-44 353.3 20.3 207 36-278 285-494 (538)
50 3ozx_A RNAse L inhibitor; ATP 100.0 1.4E-38 4.8E-43 345.6 22.3 207 36-276 267-476 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 5E-37 1.7E-41 337.3 18.9 193 64-278 360-560 (608)
52 3ux8_A Excinuclease ABC, A sub 100.0 2.3E-37 7.8E-42 345.2 15.7 206 63-276 30-297 (670)
53 3bk7_A ABC transporter ATP-bin 100.0 1.2E-37 4E-42 342.7 11.9 182 65-265 106-305 (607)
54 1yqt_A RNAse L inhibitor; ATP- 100.0 1.9E-37 6.7E-42 337.0 12.4 182 65-265 36-235 (538)
55 2iw3_A Elongation factor 3A; a 100.0 6.8E-36 2.3E-40 340.2 24.4 199 37-277 434-635 (986)
56 2iw3_A Elongation factor 3A; a 100.0 3.7E-36 1.3E-40 342.3 15.6 208 37-271 670-981 (986)
57 3ux8_A Excinuclease ABC, A sub 100.0 1.3E-34 4.5E-39 322.9 18.4 196 64-276 335-639 (670)
58 3j16_B RLI1P; ribosome recycli 100.0 1.7E-34 5.7E-39 317.2 11.1 187 65-268 92-301 (608)
59 3ozx_A RNAse L inhibitor; ATP 100.0 1.8E-34 6.3E-39 313.2 9.0 174 74-267 22-216 (538)
60 2vf7_A UVRA2, excinuclease ABC 100.0 1.9E-32 6.4E-37 309.2 16.9 206 37-276 501-826 (842)
61 2r6f_A Excinuclease ABC subuni 100.0 3.8E-32 1.3E-36 307.4 17.6 195 66-276 639-941 (972)
62 3pih_A Uvrabc system protein A 100.0 5.2E-32 1.8E-36 307.9 18.6 197 64-276 597-901 (916)
63 2ygr_A Uvrabc system protein A 100.0 1.6E-31 5.3E-36 303.4 17.7 196 66-277 657-960 (993)
64 4aby_A DNA repair protein RECN 100.0 6.6E-30 2.3E-34 268.4 19.5 201 65-270 49-381 (415)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 3.2E-33 1.1E-37 298.0 -7.6 185 68-275 129-336 (460)
66 3b85_A Phosphate starvation-in 99.9 2.6E-31 8.8E-36 255.1 -12.1 144 59-248 8-159 (208)
67 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 5.9E-27 2E-31 243.2 17.8 83 184-268 276-364 (365)
68 1e69_A Chromosome segregation 99.9 1.9E-26 6.6E-31 235.1 13.4 88 185-275 217-311 (322)
69 4gp7_A Metallophosphoesterase; 99.9 3.8E-27 1.3E-31 218.7 4.0 145 69-249 1-161 (171)
70 1tq4_A IIGP1, interferon-induc 99.9 5.5E-29 1.9E-33 261.4 -11.4 176 64-264 36-254 (413)
71 1znw_A Guanylate kinase, GMP k 99.9 4.2E-29 1.5E-33 238.5 -17.7 180 63-262 8-202 (207)
72 1ye8_A Protein THEP1, hypothet 99.9 1.3E-25 4.4E-30 210.3 4.3 144 79-268 2-159 (178)
73 3b9q_A Chloroplast SRP recepto 99.9 1.9E-25 6.6E-30 226.0 0.6 173 67-266 90-284 (302)
74 2v9p_A Replication protein E1; 99.9 2.3E-27 7.7E-32 239.8 -16.7 168 39-281 102-270 (305)
75 3sop_A Neuronal-specific septi 99.9 3E-25 1E-29 221.1 -3.7 147 79-248 4-151 (270)
76 2dpy_A FLII, flagellum-specifi 99.9 5.9E-26 2E-30 240.7 -9.8 191 38-276 131-343 (438)
77 2og2_A Putative signal recogni 99.9 1.6E-24 5.4E-29 223.8 0.1 172 68-266 148-341 (359)
78 2pt7_A CAG-ALFA; ATPase, prote 99.9 6.4E-24 2.2E-28 217.4 -0.1 131 66-266 160-292 (330)
79 3pih_A Uvrabc system protein A 99.9 3.2E-22 1.1E-26 227.7 11.3 163 93-277 384-560 (916)
80 1cr0_A DNA primase/helicase; R 99.9 4.2E-23 1.4E-27 207.2 3.0 184 64-266 22-237 (296)
81 2o5v_A DNA replication and rep 99.9 6.4E-22 2.2E-26 204.5 11.8 85 183-275 260-354 (359)
82 1z6g_A Guanylate kinase; struc 99.9 2.1E-26 7.1E-31 222.1 -20.6 164 64-247 10-194 (218)
83 3qkt_A DNA double-strand break 99.9 6.6E-21 2.2E-25 195.6 18.8 80 184-265 245-332 (339)
84 2jeo_A Uridine-cytidine kinase 99.9 2.9E-23 1E-27 203.2 -0.5 181 62-280 10-190 (245)
85 2obl_A ESCN; ATPase, hydrolase 99.8 1.5E-23 5.2E-28 215.9 -4.7 192 37-275 44-253 (347)
86 3aez_A Pantothenate kinase; tr 99.8 1.7E-24 5.7E-29 220.1 -11.8 160 74-265 87-246 (312)
87 1tf7_A KAIC; homohexamer, hexa 99.8 2.5E-24 8.5E-29 233.5 -12.8 167 63-263 24-209 (525)
88 4ad8_A DNA repair protein RECN 99.8 3E-21 1E-25 209.0 11.1 77 185-264 394-473 (517)
89 2r6f_A Excinuclease ABC subuni 99.8 1.4E-20 4.7E-25 213.3 14.5 134 135-276 451-599 (972)
90 1tf7_A KAIC; homohexamer, hexa 99.8 4.4E-21 1.5E-25 208.0 9.9 156 71-265 275-444 (525)
91 2o8b_B DNA mismatch repair pro 99.8 5.2E-22 1.8E-26 229.2 2.1 172 38-273 750-938 (1022)
92 2vf7_A UVRA2, excinuclease ABC 99.8 1.1E-20 3.7E-25 213.5 10.3 169 85-276 270-474 (842)
93 2ehv_A Hypothetical protein PH 99.8 8.7E-22 3E-26 191.2 -0.2 163 72-262 25-206 (251)
94 3thx_A DNA mismatch repair pro 99.8 3.2E-20 1.1E-24 212.0 11.9 152 63-275 648-811 (934)
95 2eyu_A Twitching motility prot 99.8 4E-21 1.4E-25 190.4 2.6 132 65-263 15-147 (261)
96 2ygr_A Uvrabc system protein A 99.8 1.3E-19 4.4E-24 206.1 13.0 133 133-277 466-617 (993)
97 4a74_A DNA repair and recombin 99.8 1.1E-20 3.7E-25 181.2 1.1 150 72-264 20-200 (231)
98 2qnr_A Septin-2, protein NEDD5 99.8 1.1E-21 3.7E-26 198.3 -7.0 155 63-248 10-168 (301)
99 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 7.7E-19 2.6E-23 159.4 11.4 81 184-266 54-142 (148)
100 3asz_A Uridine kinase; cytidin 99.8 4.7E-22 1.6E-26 189.2 -11.2 146 74-248 3-162 (211)
101 3thx_B DNA mismatch repair pro 99.8 2.9E-20 9.9E-25 211.9 0.3 144 63-258 659-805 (918)
102 1ewq_A DNA mismatch repair pro 99.8 6.4E-20 2.2E-24 206.0 2.8 128 63-248 565-699 (765)
103 1rj9_A FTSY, signal recognitio 99.8 2.8E-20 9.7E-25 188.2 -0.7 148 76-248 101-259 (304)
104 1w1w_A Structural maintenance 99.7 6.4E-18 2.2E-22 178.7 14.2 75 186-262 332-410 (430)
105 3szr_A Interferon-induced GTP- 99.7 1E-20 3.4E-25 208.5 -8.3 194 37-279 9-239 (608)
106 2w0m_A SSO2452; RECA, SSPF, un 99.7 1.4E-19 4.9E-24 173.0 -1.2 167 64-264 9-192 (235)
107 1wb9_A DNA mismatch repair pro 99.7 5.6E-19 1.9E-23 199.4 3.0 155 63-270 594-751 (800)
108 2i3b_A HCR-ntpase, human cance 99.7 2.7E-20 9.4E-25 175.7 -6.8 156 77-270 1-169 (189)
109 1pzn_A RAD51, DNA repair and r 99.7 1.3E-19 4.6E-24 186.7 -3.7 163 66-271 119-309 (349)
110 1pui_A ENGB, probable GTP-bind 99.7 1.2E-19 4E-24 171.6 -5.2 175 38-239 3-202 (210)
111 3jvv_A Twitching mobility prot 99.7 2.4E-18 8.2E-23 177.7 3.5 127 73-264 119-246 (356)
112 1nlf_A Regulatory protein REPA 99.7 2.2E-17 7.7E-22 164.3 10.4 151 73-248 26-182 (279)
113 1s96_A Guanylate kinase, GMP k 99.7 1.3E-18 4.6E-23 167.9 -3.0 149 71-281 10-164 (219)
114 2qag_C Septin-7; cell cycle, c 99.7 1.5E-18 5E-23 182.7 -3.2 162 38-248 11-178 (418)
115 2bdt_A BH3686; alpha-beta prot 99.6 1.3E-19 4.4E-24 169.5 -14.2 172 77-275 2-182 (189)
116 2cvh_A DNA repair and recombin 99.6 4.4E-16 1.5E-20 148.0 8.2 154 65-264 7-185 (220)
117 1zp6_A Hypothetical protein AT 99.6 1.2E-18 4E-23 162.7 -10.9 153 73-245 5-159 (191)
118 2bbw_A Adenylate kinase 4, AK4 99.6 5.8E-19 2E-23 172.4 -13.9 147 76-236 26-199 (246)
119 2ewv_A Twitching motility prot 99.6 9.9E-17 3.4E-21 166.6 1.3 130 65-261 126-256 (372)
120 3kta_B Chromosome segregation 99.6 3.2E-15 1.1E-19 139.0 10.1 90 185-277 62-158 (173)
121 2qag_B Septin-6, protein NEDD5 99.6 1.1E-16 3.8E-21 168.1 0.3 166 63-246 27-218 (427)
122 2rcn_A Probable GTPase ENGC; Y 99.6 6.9E-16 2.4E-20 158.9 5.5 121 67-202 206-328 (358)
123 1nij_A Hypothetical protein YJ 99.6 3.7E-19 1.3E-23 181.0 -19.1 161 77-256 4-197 (318)
124 2gza_A Type IV secretion syste 99.6 3.3E-16 1.1E-20 162.1 1.4 137 66-265 164-303 (361)
125 1lw7_A Transcriptional regulat 99.5 5.6E-18 1.9E-22 175.3 -15.1 162 66-262 157-342 (365)
126 1n0w_A DNA repair protein RAD5 99.5 6.4E-15 2.2E-19 142.1 6.6 150 72-264 19-209 (243)
127 1htw_A HI0065; nucleotide-bind 99.5 1.6E-16 5.4E-21 145.7 -4.5 80 62-144 18-97 (158)
128 2yhs_A FTSY, cell division pro 99.5 3.3E-16 1.1E-20 166.7 -2.9 152 67-245 283-447 (503)
129 3e70_C DPA, signal recognition 99.5 1.7E-15 5.9E-20 154.6 1.0 162 74-266 126-306 (328)
130 2qm8_A GTPase/ATPase; G protei 99.5 3.1E-17 1.1E-21 168.2 -12.8 162 63-235 41-260 (337)
131 3auy_A DNA double-strand break 99.5 1.1E-13 3.7E-18 143.5 12.4 75 185-262 278-359 (371)
132 3ec2_A DNA replication protein 99.5 1.9E-15 6.4E-20 140.1 -1.6 114 71-250 32-146 (180)
133 2yv5_A YJEQ protein; hydrolase 99.5 2.7E-15 9.3E-20 151.4 -1.6 121 74-201 162-301 (302)
134 2f1r_A Molybdopterin-guanine d 99.5 3.4E-16 1.2E-20 145.3 -8.3 135 78-237 3-163 (171)
135 2kjq_A DNAA-related protein; s 99.4 2E-14 7E-19 130.2 3.2 97 65-248 29-126 (149)
136 1sxj_E Activator 1 40 kDa subu 99.4 1.1E-13 3.9E-18 141.1 6.9 181 80-302 39-228 (354)
137 1udx_A The GTP-binding protein 99.4 3E-14 1E-18 149.8 2.1 167 67-257 147-318 (416)
138 1odf_A YGR205W, hypothetical 3 99.4 1.6E-14 5.5E-19 145.0 -2.2 128 75-222 29-169 (290)
139 2oap_1 GSPE-2, type II secreti 99.4 6.1E-16 2.1E-20 166.8 -14.1 177 64-256 247-458 (511)
140 3lda_A DNA repair protein RAD5 99.4 2.1E-12 7.1E-17 135.2 12.9 156 67-265 167-364 (400)
141 1p9r_A General secretion pathw 99.4 8.9E-16 3E-20 161.6 -13.3 132 64-211 156-315 (418)
142 1ni3_A YCHF GTPase, YCHF GTP-b 99.3 5.3E-16 1.8E-20 161.8 -17.3 168 73-274 16-210 (392)
143 3c8u_A Fructokinase; YP_612366 99.3 8E-15 2.7E-19 139.4 -8.5 165 74-280 19-184 (208)
144 1in4_A RUVB, holliday junction 99.3 6.8E-15 2.3E-19 150.3 -10.9 165 63-257 30-211 (334)
145 1u0l_A Probable GTPase ENGC; p 99.3 1.7E-13 5.7E-18 138.2 -1.8 106 73-190 165-294 (301)
146 1t9h_A YLOQ, probable GTPase E 99.3 3.5E-13 1.2E-17 136.2 -0.8 118 72-195 168-303 (307)
147 1sq5_A Pantothenate kinase; P- 99.2 1.3E-13 4.3E-18 139.5 -6.4 96 38-149 37-156 (308)
148 2x8a_A Nuclear valosin-contain 99.2 1.7E-15 5.9E-20 150.8 -19.8 128 63-216 32-164 (274)
149 1lvg_A Guanylate kinase, GMP k 99.2 6.9E-16 2.3E-20 146.1 -21.8 150 75-263 2-173 (198)
150 2dr3_A UPF0273 protein PH0284; 99.2 1.4E-12 4.9E-17 125.6 -1.8 60 204-263 127-196 (247)
151 1vma_A Cell division protein F 99.1 2.4E-11 8.3E-16 122.7 5.1 114 69-234 96-212 (306)
152 2r6a_A DNAB helicase, replicat 99.1 1.9E-11 6.4E-16 130.0 3.4 179 64-265 190-400 (454)
153 1ls1_A Signal recognition part 99.1 3.3E-10 1.1E-14 113.8 9.7 127 68-243 91-218 (295)
154 2ius_A DNA translocase FTSK; n 99.0 9.3E-12 3.2E-16 133.6 -2.8 174 69-260 159-361 (512)
155 3euj_A Chromosome partition pr 99.0 6.1E-11 2.1E-15 126.4 3.4 52 64-116 17-68 (483)
156 2zr9_A Protein RECA, recombina 99.0 2.9E-10 1E-14 116.9 7.4 148 72-271 56-237 (349)
157 2px0_A Flagellar biosynthesis 99.0 3.3E-10 1.1E-14 113.9 6.9 157 75-285 103-268 (296)
158 1iy2_A ATP-dependent metallopr 99.0 1.2E-13 3.9E-18 137.2 -18.8 124 63-208 61-190 (278)
159 3k1j_A LON protease, ATP-depen 99.0 6.1E-12 2.1E-16 138.4 -7.6 160 62-232 45-227 (604)
160 1ixz_A ATP-dependent metallopr 99.0 1.7E-13 5.8E-18 133.9 -18.5 129 63-215 37-171 (254)
161 3tr0_A Guanylate kinase, GMP k 99.0 3.1E-11 1.1E-15 113.2 -2.6 69 71-143 1-73 (205)
162 1oix_A RAS-related protein RAB 98.9 8E-11 2.7E-15 109.8 -0.6 138 79-233 31-189 (191)
163 1qhl_A Protein (cell division 98.9 7.8E-11 2.7E-15 114.0 -3.3 58 71-129 22-91 (227)
164 3lnc_A Guanylate kinase, GMP k 98.8 8.3E-11 2.8E-15 113.2 -5.4 40 64-103 14-54 (231)
165 3hr8_A Protein RECA; alpha and 98.8 5.1E-09 1.7E-13 107.7 5.6 49 66-114 48-99 (356)
166 2qtf_A Protein HFLX, GTP-bindi 98.6 2.1E-08 7.2E-13 103.5 6.4 149 76-235 177-353 (364)
167 1svm_A Large T antigen; AAA+ f 98.6 1.4E-11 4.7E-16 127.9 -18.6 158 64-241 156-326 (377)
168 2ce7_A Cell division protein F 98.6 3.6E-08 1.2E-12 105.2 7.0 59 190-248 93-165 (476)
169 2f9l_A RAB11B, member RAS onco 98.6 1.9E-08 6.4E-13 93.9 3.8 37 196-234 130-166 (199)
170 4eun_A Thermoresistant glucoki 98.6 1.7E-09 5.9E-14 101.7 -3.6 70 69-142 21-93 (200)
171 2xau_A PRE-mRNA-splicing facto 98.5 1.1E-07 3.7E-12 107.4 8.9 72 185-257 188-261 (773)
172 3kta_A Chromosome segregation 98.5 5.5E-08 1.9E-12 89.5 4.4 62 68-130 18-89 (182)
173 3uie_A Adenylyl-sulfate kinase 98.5 1.6E-09 5.4E-14 102.0 -6.3 53 64-117 12-66 (200)
174 2j41_A Guanylate kinase; GMP, 98.5 4.4E-08 1.5E-12 91.6 2.7 34 73-106 2-35 (207)
175 4a1f_A DNAB helicase, replicat 98.5 7E-08 2.4E-12 98.5 4.1 129 65-245 34-164 (338)
176 4e22_A Cytidylate kinase; P-lo 98.4 1.4E-08 4.6E-13 99.4 -1.5 63 65-130 18-96 (252)
177 2dhr_A FTSH; AAA+ protein, hex 98.4 7.2E-10 2.5E-14 119.0 -13.0 129 64-216 53-187 (499)
178 1zu4_A FTSY; GTPase, signal re 98.4 5.7E-08 1.9E-12 98.6 0.9 77 67-143 95-185 (320)
179 3a00_A Guanylate kinase, GMP k 98.4 7.8E-08 2.7E-12 89.3 1.4 30 77-106 1-30 (186)
180 3nwj_A ATSK2; P loop, shikimat 98.4 2.3E-08 8E-13 97.9 -2.2 53 38-102 17-73 (250)
181 2e87_A Hypothetical protein PH 98.3 2.8E-07 9.7E-12 94.6 5.3 61 186-248 230-293 (357)
182 1jjv_A Dephospho-COA kinase; P 98.3 1E-07 3.4E-12 89.6 1.0 127 79-262 4-131 (206)
183 1kgd_A CASK, peripheral plasma 98.3 1.6E-07 5.6E-12 86.6 1.6 38 75-112 3-41 (180)
184 1fnn_A CDC6P, cell division co 98.3 1.8E-06 6.2E-11 88.2 9.5 44 204-248 124-170 (389)
185 2z4s_A Chromosomal replication 98.3 3.9E-07 1.3E-11 96.4 4.1 96 204-301 193-296 (440)
186 3t34_A Dynamin-related protein 98.2 5.2E-06 1.8E-10 85.1 12.1 157 64-245 24-212 (360)
187 2dy1_A Elongation factor G; tr 98.2 3.9E-07 1.3E-11 101.2 3.3 129 71-248 3-137 (665)
188 3vaa_A Shikimate kinase, SK; s 98.1 8.5E-07 2.9E-11 83.0 3.4 39 63-101 11-49 (199)
189 2vp4_A Deoxynucleoside kinase; 98.1 7.1E-07 2.4E-11 85.7 2.4 40 72-115 15-54 (230)
190 3tau_A Guanylate kinase, GMP k 98.1 8.3E-07 2.8E-11 83.9 2.8 36 75-110 6-42 (208)
191 1v5w_A DMC1, meiotic recombina 98.1 1E-05 3.6E-10 82.5 11.0 143 67-247 111-274 (343)
192 3bh0_A DNAB-like replicative h 98.1 3.7E-06 1.3E-10 84.8 6.5 132 64-245 55-189 (315)
193 3b9p_A CG5977-PA, isoform A; A 98.1 2.1E-05 7.2E-10 77.8 11.7 72 189-260 97-185 (297)
194 1ega_A Protein (GTP-binding pr 98.0 5.4E-06 1.8E-10 83.1 6.1 150 77-258 8-169 (301)
195 1rz3_A Hypothetical protein rb 98.0 1E-06 3.6E-11 82.7 0.8 42 74-115 19-60 (201)
196 2z43_A DNA repair and recombin 98.0 2.3E-05 7.9E-10 79.2 10.7 142 67-246 96-257 (324)
197 1knq_A Gluconate kinase; ALFA/ 98.0 2.2E-06 7.4E-11 78.1 2.1 37 75-115 6-42 (175)
198 3kl4_A SRP54, signal recogniti 97.9 1.9E-05 6.5E-10 83.1 9.0 125 76-246 96-223 (433)
199 3ney_A 55 kDa erythrocyte memb 97.9 3.1E-06 1.1E-10 79.8 2.6 29 74-102 16-44 (197)
200 2qby_A CDC6 homolog 1, cell di 97.9 2.6E-06 9E-11 86.5 1.9 28 75-102 43-70 (386)
201 2qt1_A Nicotinamide riboside k 97.9 6.4E-06 2.2E-10 77.2 4.3 44 72-134 16-59 (207)
202 3tqc_A Pantothenate kinase; bi 97.9 7.1E-07 2.4E-11 90.5 -3.2 40 63-102 72-117 (321)
203 3cr8_A Sulfate adenylyltranfer 97.8 2.9E-06 9.9E-11 92.1 0.9 43 73-115 365-409 (552)
204 1cke_A CK, MSSA, protein (cyti 97.8 1.1E-06 3.8E-11 83.3 -2.3 54 77-130 5-74 (227)
205 3cf0_A Transitional endoplasmi 97.8 3E-05 1E-09 77.4 7.4 29 73-101 45-73 (301)
206 2pez_A Bifunctional 3'-phospho 97.8 2.1E-06 7.1E-11 78.7 -1.5 40 75-115 3-44 (179)
207 2q6t_A DNAB replication FORK h 97.8 0.0001 3.5E-09 77.7 11.3 170 65-262 188-396 (444)
208 2wjg_A FEOB, ferrous iron tran 97.7 1.2E-05 4.2E-10 73.2 2.9 22 79-100 9-30 (188)
209 1lv7_A FTSH; alpha/beta domain 97.7 0.00011 3.9E-09 71.0 9.8 33 67-101 37-69 (257)
210 1ypw_A Transitional endoplasmi 97.7 2.2E-05 7.6E-10 89.0 5.3 30 73-102 234-263 (806)
211 1kag_A SKI, shikimate kinase I 97.7 1.2E-05 4.3E-10 72.6 2.7 28 76-103 3-30 (173)
212 2p67_A LAO/AO transport system 97.7 1.7E-06 5.8E-11 88.3 -3.6 53 63-115 42-94 (341)
213 1sxj_C Activator 1 40 kDa subu 97.7 5.9E-07 2E-11 91.2 -7.8 44 63-106 30-75 (340)
214 3lxx_A GTPase IMAP family memb 97.6 0.00022 7.4E-09 68.3 10.5 28 79-106 31-58 (239)
215 1f2t_A RAD50 ABC-ATPase; DNA d 97.6 2.7E-05 9.2E-10 69.8 3.7 30 69-99 16-45 (149)
216 3llm_A ATP-dependent RNA helic 97.6 1.4E-05 4.9E-10 76.6 1.7 152 75-256 74-228 (235)
217 1mky_A Probable GTP-binding pr 97.6 5.1E-05 1.7E-09 79.9 5.7 146 79-234 182-353 (439)
218 4eaq_A DTMP kinase, thymidylat 97.6 2.1E-05 7.2E-10 75.6 2.3 45 66-111 12-59 (229)
219 3m6a_A ATP-dependent protease 97.6 8.5E-06 2.9E-10 88.3 -0.6 50 64-114 96-145 (543)
220 2www_A Methylmalonic aciduria 97.6 1.8E-05 6.1E-10 81.0 1.5 41 75-115 72-112 (349)
221 2w58_A DNAI, primosome compone 97.5 8.2E-05 2.8E-09 69.1 5.0 24 78-101 55-78 (202)
222 1l8q_A Chromosomal replication 97.4 0.00015 5.3E-09 72.6 6.7 46 203-248 96-142 (324)
223 1m2o_B GTP-binding protein SAR 97.4 0.00011 3.7E-09 67.6 4.8 36 64-100 11-46 (190)
224 3bos_A Putative DNA replicatio 97.4 9.5E-05 3.3E-09 69.7 4.4 44 204-247 103-148 (242)
225 2gj8_A MNME, tRNA modification 97.4 0.00013 4.6E-09 66.0 5.2 27 75-101 2-28 (172)
226 1m7g_A Adenylylsulfate kinase; 97.4 4.1E-05 1.4E-09 72.1 1.5 42 73-114 21-64 (211)
227 1u94_A RECA protein, recombina 97.4 0.00057 2E-08 70.1 10.1 35 66-100 50-86 (356)
228 3h4m_A Proteasome-activating n 97.4 0.0003 1E-08 68.8 7.6 28 74-101 48-75 (285)
229 2i1q_A DNA repair and recombin 97.3 0.00086 2.9E-08 67.3 10.8 171 66-263 86-290 (322)
230 4fcw_A Chaperone protein CLPB; 97.3 0.00024 8.2E-09 70.3 6.6 31 76-106 46-76 (311)
231 3qks_A DNA double-strand break 97.3 0.00012 4.2E-09 68.8 3.7 29 69-98 16-44 (203)
232 2qag_A Septin-2, protein NEDD5 97.3 5.7E-06 1.9E-10 85.1 -6.1 45 63-113 29-73 (361)
233 3bgw_A DNAB-like replicative h 97.2 0.00071 2.4E-08 71.4 9.3 36 65-100 185-220 (444)
234 1f6b_A SAR1; gtpases, N-termin 97.2 5.1E-05 1.7E-09 70.5 0.5 49 64-113 13-69 (198)
235 2ffh_A Protein (FFH); SRP54, s 97.2 9.1E-05 3.1E-09 77.8 1.4 46 68-115 91-136 (425)
236 3auy_A DNA double-strand break 97.2 0.00033 1.1E-08 72.0 5.5 31 67-98 16-46 (371)
237 3ice_A Transcription terminati 97.2 3.9E-05 1.3E-09 79.3 -1.5 33 69-101 166-198 (422)
238 2yvu_A Probable adenylyl-sulfa 97.2 0.00012 4.2E-09 67.2 2.0 35 74-108 10-44 (186)
239 3d8b_A Fidgetin-like protein 1 97.1 0.0022 7.4E-08 65.5 11.1 27 75-101 115-141 (357)
240 2qor_A Guanylate kinase; phosp 97.1 0.00023 7.8E-09 66.5 3.1 29 74-102 9-37 (204)
241 2v1u_A Cell division control p 97.1 0.00045 1.5E-08 69.9 5.4 27 75-101 42-68 (387)
242 2wji_A Ferrous iron transport 97.1 0.0006 2E-08 60.9 5.6 23 79-101 5-27 (165)
243 1sxj_D Activator 1 41 kDa subu 97.1 2.7E-06 9.1E-11 86.0 -11.3 51 205-257 133-183 (353)
244 1y63_A LMAJ004144AAA protein; 97.0 0.00025 8.7E-09 65.1 3.0 32 69-100 2-33 (184)
245 1j8m_F SRP54, signal recogniti 97.0 7E-05 2.4E-09 74.9 -1.4 47 68-115 89-136 (297)
246 2b8t_A Thymidine kinase; deoxy 96.9 0.0014 4.8E-08 62.7 7.3 53 205-262 89-150 (223)
247 2qz4_A Paraplegin; AAA+, SPG7, 96.9 0.0028 9.6E-08 60.7 9.6 26 76-101 38-63 (262)
248 1njg_A DNA polymerase III subu 96.9 0.00059 2E-08 63.6 4.6 44 204-249 125-168 (250)
249 2if2_A Dephospho-COA kinase; a 96.9 0.00037 1.3E-08 64.7 2.9 21 79-99 3-23 (204)
250 2ohf_A Protein OLA1, GTP-bindi 96.9 0.00032 1.1E-08 72.9 2.6 43 71-113 16-69 (396)
251 1xwi_A SKD1 protein; VPS4B, AA 96.9 0.0096 3.3E-07 59.8 13.3 27 75-101 43-69 (322)
252 1q57_A DNA primase/helicase; d 96.9 0.016 5.4E-07 61.8 15.6 35 66-100 231-265 (503)
253 3cmw_A Protein RECA, recombina 96.8 0.0029 9.8E-08 76.4 10.0 29 73-101 728-756 (1706)
254 3lxw_A GTPase IMAP family memb 96.8 0.003 1E-07 61.0 8.5 57 190-247 87-149 (247)
255 1np6_A Molybdopterin-guanine d 96.8 0.00068 2.3E-08 62.4 3.6 36 78-113 7-45 (174)
256 2zej_A Dardarin, leucine-rich 96.7 0.00069 2.4E-08 61.7 3.3 23 79-101 4-26 (184)
257 3cm0_A Adenylate kinase; ATP-b 96.7 0.00077 2.6E-08 61.4 3.5 27 75-101 2-28 (186)
258 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00014 4.9E-09 74.3 -1.8 38 64-101 9-48 (359)
259 2p5t_B PEZT; postsegregational 96.7 0.00062 2.1E-08 66.0 2.7 46 67-115 23-68 (253)
260 3t61_A Gluconokinase; PSI-biol 96.7 0.00068 2.3E-08 62.9 2.8 25 77-101 18-42 (202)
261 3n70_A Transport activator; si 96.6 0.004 1.4E-07 54.8 7.3 42 205-248 76-117 (145)
262 2r8r_A Sensor protein; KDPD, P 96.6 0.00069 2.4E-08 65.0 2.4 47 199-245 78-125 (228)
263 2vhj_A Ntpase P4, P4; non- hyd 96.6 0.0031 1.1E-07 63.6 7.1 34 67-100 113-146 (331)
264 3kb2_A SPBC2 prophage-derived 96.6 0.0011 3.9E-08 59.2 3.3 23 79-101 3-25 (173)
265 1xp8_A RECA protein, recombina 96.6 0.0037 1.3E-07 64.2 7.5 28 72-99 69-96 (366)
266 1qhx_A CPT, protein (chloramph 96.5 0.0013 4.5E-08 59.4 3.7 26 77-102 3-28 (178)
267 1q3t_A Cytidylate kinase; nucl 96.5 0.0012 4.2E-08 63.0 3.4 29 73-101 12-40 (236)
268 3r20_A Cytidylate kinase; stru 96.5 0.00062 2.1E-08 65.7 1.1 25 77-101 9-33 (233)
269 2qgz_A Helicase loader, putati 96.5 0.0015 5.3E-08 65.3 3.8 25 77-101 152-176 (308)
270 1kht_A Adenylate kinase; phosp 96.4 0.0017 5.8E-08 59.0 3.6 25 77-101 3-27 (192)
271 3co5_A Putative two-component 96.4 0.0051 1.8E-07 54.0 6.2 42 205-247 75-116 (143)
272 2rhm_A Putative kinase; P-loop 96.3 0.0019 6.6E-08 58.9 3.4 27 75-101 3-29 (193)
273 3io5_A Recombination and repai 96.3 0.013 4.6E-07 58.9 9.5 27 72-99 24-51 (333)
274 2ze6_A Isopentenyl transferase 96.3 0.002 6.8E-08 62.5 3.4 24 78-101 2-25 (253)
275 3ihw_A Centg3; RAS, centaurin, 96.3 0.0038 1.3E-07 56.9 5.0 35 79-113 22-65 (184)
276 3lw7_A Adenylate kinase relate 96.2 0.0023 7.9E-08 56.8 3.3 19 79-97 3-21 (179)
277 1gvn_B Zeta; postsegregational 96.2 0.0024 8.1E-08 63.3 3.7 36 75-112 31-66 (287)
278 1gtv_A TMK, thymidylate kinase 96.2 0.00069 2.4E-08 63.1 -0.4 25 79-103 2-26 (214)
279 2v54_A DTMP kinase, thymidylat 96.2 0.0027 9.2E-08 58.5 3.7 26 76-101 3-28 (204)
280 1vht_A Dephospho-COA kinase; s 96.2 0.0027 9.3E-08 59.5 3.6 24 76-99 3-26 (218)
281 3trf_A Shikimate kinase, SK; a 96.2 0.0027 9.3E-08 57.7 3.5 26 76-101 4-29 (185)
282 2plr_A DTMP kinase, probable t 96.2 0.0031 1E-07 58.3 3.8 27 76-102 3-29 (213)
283 1ex7_A Guanylate kinase; subst 96.1 0.0026 9E-08 59.1 3.2 23 79-101 3-25 (186)
284 2jaq_A Deoxyguanosine kinase; 96.1 0.0029 9.8E-08 58.1 3.4 23 79-101 2-24 (205)
285 2qp9_X Vacuolar protein sortin 96.1 0.013 4.3E-07 59.7 8.6 27 75-101 82-108 (355)
286 3cmu_A Protein RECA, recombina 96.1 0.016 5.5E-07 70.9 10.7 153 66-270 370-558 (2050)
287 3iij_A Coilin-interacting nucl 96.1 0.0026 8.9E-08 57.7 3.0 26 76-101 10-35 (180)
288 1fzq_A ADP-ribosylation factor 96.1 0.0031 1.1E-07 57.2 3.5 23 79-101 18-40 (181)
289 3hu3_A Transitional endoplasmi 96.1 0.0067 2.3E-07 64.7 6.5 28 74-101 235-262 (489)
290 1ly1_A Polynucleotide kinase; 96.1 0.0034 1.2E-07 56.4 3.6 22 78-99 3-24 (181)
291 2wwf_A Thymidilate kinase, put 96.0 0.0034 1.2E-07 58.2 3.4 27 75-101 8-34 (212)
292 4dcu_A GTP-binding protein ENG 96.0 0.0099 3.4E-07 62.6 7.4 54 191-248 88-142 (456)
293 1jal_A YCHF protein; nucleotid 96.0 0.0046 1.6E-07 63.5 4.6 36 77-112 2-48 (363)
294 4ag6_A VIRB4 ATPase, type IV s 96.0 0.0021 7.2E-08 66.2 2.1 45 205-249 262-309 (392)
295 1xx6_A Thymidine kinase; NESG, 96.0 0.0058 2E-07 57.0 4.9 53 205-262 81-142 (191)
296 2c95_A Adenylate kinase 1; tra 96.0 0.0034 1.2E-07 57.3 3.2 27 75-101 7-33 (196)
297 1via_A Shikimate kinase; struc 96.0 0.0035 1.2E-07 56.6 3.2 23 79-101 6-28 (175)
298 3k53_A Ferrous iron transport 95.9 0.0032 1.1E-07 61.5 2.9 44 214-258 144-188 (271)
299 1uf9_A TT1252 protein; P-loop, 95.9 0.0039 1.3E-07 57.2 3.4 24 77-100 8-31 (203)
300 1nn5_A Similar to deoxythymidy 95.9 0.004 1.4E-07 57.8 3.3 27 75-101 7-33 (215)
301 1tev_A UMP-CMP kinase; ploop, 95.9 0.0047 1.6E-07 56.1 3.7 26 76-101 2-27 (196)
302 3cmw_A Protein RECA, recombina 95.9 0.072 2.5E-06 64.4 14.8 153 66-270 370-558 (1706)
303 3vfd_A Spastin; ATPase, microt 95.9 0.037 1.3E-06 56.8 10.8 27 75-101 146-172 (389)
304 1nks_A Adenylate kinase; therm 95.8 0.0042 1.5E-07 56.3 3.1 23 79-101 3-25 (194)
305 4b4t_M 26S protease regulatory 95.8 0.029 1E-06 58.8 9.8 28 74-101 212-239 (434)
306 1xjc_A MOBB protein homolog; s 95.8 0.0049 1.7E-07 56.4 3.2 24 78-101 5-28 (169)
307 1aky_A Adenylate kinase; ATP:A 95.7 0.0057 1.9E-07 57.4 3.7 27 75-101 2-28 (220)
308 2ged_A SR-beta, signal recogni 95.7 0.0046 1.6E-07 56.1 3.0 24 78-101 49-72 (193)
309 1ko7_A HPR kinase/phosphatase; 95.7 0.0085 2.9E-07 60.2 5.1 37 63-100 131-167 (314)
310 1z2a_A RAS-related protein RAB 95.7 0.0048 1.6E-07 54.2 2.9 23 79-101 7-29 (168)
311 2bwj_A Adenylate kinase 5; pho 95.7 0.0043 1.5E-07 56.8 2.7 27 75-101 10-36 (199)
312 2nzj_A GTP-binding protein REM 95.7 0.0055 1.9E-07 54.3 3.3 23 79-101 6-28 (175)
313 2erx_A GTP-binding protein DI- 95.7 0.0056 1.9E-07 53.9 3.3 22 79-100 5-26 (172)
314 4b4t_L 26S protease subunit RP 95.7 0.051 1.7E-06 57.0 11.1 70 199-274 268-354 (437)
315 3q72_A GTP-binding protein RAD 95.7 0.0045 1.6E-07 54.4 2.6 22 80-101 5-26 (166)
316 3cbq_A GTP-binding protein REM 95.7 0.0056 1.9E-07 56.3 3.3 22 79-100 25-46 (195)
317 1kao_A RAP2A; GTP-binding prot 95.6 0.0055 1.9E-07 53.5 3.0 23 79-101 5-27 (167)
318 2j9r_A Thymidine kinase; TK1, 95.6 0.026 8.9E-07 53.5 7.7 53 205-262 101-162 (214)
319 4b4t_J 26S protease regulatory 95.6 0.051 1.7E-06 56.4 10.5 48 201-248 237-298 (405)
320 2dyk_A GTP-binding protein; GT 95.6 0.0057 1.9E-07 53.4 3.0 23 79-101 3-25 (161)
321 1u8z_A RAS-related protein RAL 95.6 0.0056 1.9E-07 53.5 2.9 23 79-101 6-28 (168)
322 3q85_A GTP-binding protein REM 95.6 0.0062 2.1E-07 53.7 3.2 22 80-101 5-26 (169)
323 2ce2_X GTPase HRAS; signaling 95.6 0.0052 1.8E-07 53.6 2.6 22 80-101 6-27 (166)
324 2z0h_A DTMP kinase, thymidylat 95.6 0.0066 2.3E-07 55.4 3.4 23 79-101 2-24 (197)
325 3tw8_B RAS-related protein RAB 95.6 0.0059 2E-07 54.3 3.0 23 79-101 11-33 (181)
326 4b4t_K 26S protease regulatory 95.6 0.039 1.3E-06 57.8 9.5 27 75-101 204-230 (428)
327 3iby_A Ferrous iron transport 95.5 0.0073 2.5E-07 58.7 3.8 23 79-101 3-25 (256)
328 1z0j_A RAB-22, RAS-related pro 95.5 0.0062 2.1E-07 53.6 3.0 23 79-101 8-30 (170)
329 3ake_A Cytidylate kinase; CMP 95.5 0.0064 2.2E-07 56.0 3.2 23 79-101 4-26 (208)
330 2vli_A Antibiotic resistance p 95.5 0.0049 1.7E-07 55.7 2.3 26 76-101 4-29 (183)
331 1z08_A RAS-related protein RAB 95.5 0.0063 2.1E-07 53.6 3.0 23 79-101 8-30 (170)
332 1ek0_A Protein (GTP-binding pr 95.5 0.0064 2.2E-07 53.4 2.9 22 80-101 6-27 (170)
333 1zd8_A GTP:AMP phosphotransfer 95.5 0.0068 2.3E-07 57.3 3.3 27 75-101 5-31 (227)
334 1c1y_A RAS-related protein RAP 95.5 0.0065 2.2E-07 53.3 2.9 21 80-100 6-26 (167)
335 3b1v_A Ferrous iron uptake tra 95.5 0.0067 2.3E-07 59.6 3.3 23 79-101 5-27 (272)
336 3iev_A GTP-binding protein ERA 95.5 0.0065 2.2E-07 60.6 3.2 23 79-101 12-34 (308)
337 1wms_A RAB-9, RAB9, RAS-relate 95.5 0.0067 2.3E-07 53.9 3.0 22 80-101 10-31 (177)
338 1g16_A RAS-related protein SEC 95.5 0.006 2.1E-07 53.7 2.6 22 80-101 6-27 (170)
339 2cdn_A Adenylate kinase; phosp 95.5 0.0084 2.9E-07 55.3 3.7 26 76-101 19-44 (201)
340 1ky3_A GTP-binding protein YPT 95.5 0.0068 2.3E-07 53.9 3.0 23 79-101 10-32 (182)
341 1svi_A GTP-binding protein YSX 95.4 0.0063 2.2E-07 55.2 2.7 23 79-101 25-47 (195)
342 2lkc_A Translation initiation 95.4 0.0092 3.1E-07 53.1 3.7 25 77-101 8-32 (178)
343 2orv_A Thymidine kinase; TP4A 95.4 0.052 1.8E-06 52.1 9.1 53 204-262 89-150 (234)
344 3fb4_A Adenylate kinase; psych 95.4 0.0081 2.8E-07 56.0 3.4 23 79-101 2-24 (216)
345 2fn4_A P23, RAS-related protei 95.4 0.0067 2.3E-07 53.9 2.7 23 79-101 11-33 (181)
346 3pqc_A Probable GTP-binding pr 95.4 0.0069 2.4E-07 54.7 2.7 23 79-101 25-47 (195)
347 2pbr_A DTMP kinase, thymidylat 95.4 0.0087 3E-07 54.3 3.4 23 79-101 2-24 (195)
348 1r2q_A RAS-related protein RAB 95.3 0.0077 2.6E-07 52.8 2.9 22 79-100 8-29 (170)
349 4dsu_A GTPase KRAS, isoform 2B 95.3 0.0078 2.7E-07 54.0 3.0 23 79-101 6-28 (189)
350 3clv_A RAB5 protein, putative; 95.3 0.0078 2.7E-07 54.4 3.0 23 79-101 9-31 (208)
351 2cxx_A Probable GTP-binding pr 95.3 0.0073 2.5E-07 54.3 2.8 22 80-101 4-25 (190)
352 2hxs_A RAB-26, RAS-related pro 95.3 0.0089 3E-07 53.2 3.3 23 79-101 8-30 (178)
353 1ukz_A Uridylate kinase; trans 95.3 0.0096 3.3E-07 54.9 3.6 25 77-101 15-39 (203)
354 2ew1_A RAS-related protein RAB 95.3 0.014 4.8E-07 54.1 4.7 23 79-101 28-50 (201)
355 1upt_A ARL1, ADP-ribosylation 95.3 0.0083 2.8E-07 52.9 2.9 22 79-100 9-30 (171)
356 1zak_A Adenylate kinase; ATP:A 95.3 0.0075 2.6E-07 56.7 2.8 26 76-101 4-29 (222)
357 1e6c_A Shikimate kinase; phosp 95.3 0.0082 2.8E-07 53.6 2.9 23 79-101 4-26 (173)
358 1zuh_A Shikimate kinase; alpha 95.3 0.01 3.4E-07 53.1 3.5 24 78-101 8-31 (168)
359 3bc1_A RAS-related protein RAB 95.3 0.0084 2.9E-07 53.9 2.9 23 79-101 13-35 (195)
360 3dl0_A Adenylate kinase; phosp 95.3 0.0096 3.3E-07 55.5 3.4 23 79-101 2-24 (216)
361 1r8s_A ADP-ribosylation factor 95.2 0.0088 3E-07 52.4 2.9 21 80-100 3-23 (164)
362 3a4m_A L-seryl-tRNA(SEC) kinas 95.2 0.011 3.7E-07 57.4 3.8 25 76-100 3-27 (260)
363 2oil_A CATX-8, RAS-related pro 95.2 0.0086 2.9E-07 54.4 2.9 23 79-101 27-49 (193)
364 1qf9_A UMP/CMP kinase, protein 95.2 0.01 3.5E-07 53.7 3.4 25 77-101 6-30 (194)
365 2pt5_A Shikimate kinase, SK; a 95.2 0.011 3.7E-07 52.6 3.5 23 79-101 2-24 (168)
366 1moz_A ARL1, ADP-ribosylation 95.2 0.0058 2E-07 54.7 1.6 23 77-99 18-40 (183)
367 3tlx_A Adenylate kinase 2; str 95.2 0.012 3.9E-07 56.6 3.7 26 76-101 28-53 (243)
368 2iyv_A Shikimate kinase, SK; t 95.2 0.0087 3E-07 54.3 2.7 24 78-101 3-26 (184)
369 1wf3_A GTP-binding protein; GT 95.2 0.01 3.6E-07 59.1 3.5 26 75-101 6-31 (301)
370 2y8e_A RAB-protein 6, GH09086P 95.2 0.0086 3E-07 53.1 2.6 22 79-100 16-37 (179)
371 2g6b_A RAS-related protein RAB 95.2 0.0095 3.3E-07 53.1 2.9 23 79-101 12-34 (180)
372 1z0f_A RAB14, member RAS oncog 95.2 0.0096 3.3E-07 52.8 2.9 23 79-101 17-39 (179)
373 2a9k_A RAS-related protein RAL 95.1 0.0096 3.3E-07 53.2 2.9 23 79-101 20-42 (187)
374 3t1o_A Gliding protein MGLA; G 95.1 0.01 3.5E-07 53.6 3.0 23 79-101 16-38 (198)
375 3con_A GTPase NRAS; structural 95.1 0.01 3.4E-07 53.7 2.9 23 79-101 23-45 (190)
376 2efe_B Small GTP-binding prote 95.1 0.01 3.6E-07 52.9 3.0 23 79-101 14-36 (181)
377 3t5d_A Septin-7; GTP-binding p 95.1 0.0092 3.1E-07 58.3 2.7 22 80-101 11-32 (274)
378 1ksh_A ARF-like protein 2; sma 95.0 0.012 4E-07 53.0 3.1 26 76-101 17-42 (186)
379 1nrj_B SR-beta, signal recogni 95.0 0.011 3.7E-07 54.9 2.9 23 79-101 14-36 (218)
380 2bov_A RAla, RAS-related prote 95.0 0.011 3.7E-07 54.0 2.9 23 79-101 16-38 (206)
381 1vg8_A RAS-related protein RAB 95.0 0.011 3.8E-07 54.0 3.0 23 79-101 10-32 (207)
382 2bme_A RAB4A, RAS-related prot 95.0 0.01 3.5E-07 53.2 2.6 23 79-101 12-34 (186)
383 1jbk_A CLPB protein; beta barr 94.9 0.015 5.1E-07 51.9 3.6 27 75-101 41-67 (195)
384 2gf9_A RAS-related protein RAB 94.9 0.012 4E-07 53.3 2.9 23 79-101 24-46 (189)
385 3tkl_A RAS-related protein RAB 94.9 0.012 4E-07 53.3 2.9 22 80-101 19-40 (196)
386 2qmh_A HPR kinase/phosphorylas 94.9 0.023 7.7E-07 53.4 4.8 38 63-101 21-58 (205)
387 2gf0_A GTP-binding protein DI- 94.9 0.011 3.8E-07 53.7 2.7 22 79-100 10-31 (199)
388 2xtp_A GTPase IMAP family memb 94.9 0.012 4.1E-07 56.6 3.0 23 79-101 24-46 (260)
389 3kkq_A RAS-related protein M-R 94.9 0.012 4.3E-07 52.6 2.9 23 79-101 20-42 (183)
390 1mh1_A RAC1; GTP-binding, GTPa 94.9 0.013 4.3E-07 52.4 2.9 22 79-100 7-28 (186)
391 1m7b_A RND3/RHOE small GTP-bin 94.9 0.011 3.9E-07 53.3 2.6 23 79-101 9-31 (184)
392 1zbd_A Rabphilin-3A; G protein 94.9 0.014 4.8E-07 53.4 3.2 23 79-101 10-32 (203)
393 1uj2_A Uridine-cytidine kinase 94.8 0.014 4.9E-07 56.1 3.4 24 78-101 23-46 (252)
394 2fg5_A RAB-22B, RAS-related pr 94.8 0.012 4.1E-07 53.6 2.7 23 79-101 25-47 (192)
395 3be4_A Adenylate kinase; malar 94.8 0.014 4.8E-07 54.8 3.2 26 76-101 4-29 (217)
396 3a1s_A Iron(II) transport prot 94.8 0.014 4.9E-07 56.6 3.3 23 79-101 7-29 (258)
397 2il1_A RAB12; G-protein, GDP, 94.8 0.013 4.5E-07 53.4 2.9 23 79-101 28-50 (192)
398 2dby_A GTP-binding protein; GD 94.8 0.012 4.2E-07 60.4 2.9 21 80-100 4-24 (368)
399 2xb4_A Adenylate kinase; ATP-b 94.8 0.016 5.3E-07 54.8 3.4 23 79-101 2-24 (223)
400 2grj_A Dephospho-COA kinase; T 94.8 0.016 5.4E-07 53.9 3.4 25 76-100 11-35 (192)
401 1z06_A RAS-related protein RAB 94.8 0.014 4.8E-07 52.8 3.0 23 79-101 22-44 (189)
402 1qvr_A CLPB protein; coiled co 94.8 0.042 1.4E-06 62.5 7.5 24 78-101 589-612 (854)
403 2cjw_A GTP-binding protein GEM 94.8 0.014 4.7E-07 53.5 2.9 22 79-100 8-29 (192)
404 1jwy_B Dynamin A GTPase domain 94.8 0.014 4.6E-07 57.8 3.0 23 79-101 26-48 (315)
405 2wsm_A Hydrogenase expression/ 94.7 0.014 4.7E-07 54.4 2.9 24 78-101 31-54 (221)
406 3i8s_A Ferrous iron transport 94.7 0.014 4.7E-07 57.2 3.0 23 79-101 5-27 (274)
407 3oes_A GTPase rhebl1; small GT 94.7 0.013 4.3E-07 53.8 2.6 23 79-101 26-48 (201)
408 3bwd_D RAC-like GTP-binding pr 94.7 0.015 5E-07 51.9 2.9 23 79-101 10-32 (182)
409 3dm5_A SRP54, signal recogniti 94.7 0.16 5.4E-06 53.4 11.2 27 76-102 99-125 (443)
410 3t5g_A GTP-binding protein RHE 94.7 0.013 4.6E-07 52.3 2.6 22 79-100 8-29 (181)
411 2a5j_A RAS-related protein RAB 94.7 0.015 5E-07 52.8 2.9 23 79-101 23-45 (191)
412 1zj6_A ADP-ribosylation factor 94.7 0.015 5.1E-07 52.5 2.9 22 79-100 18-39 (187)
413 4dhe_A Probable GTP-binding pr 94.7 0.008 2.7E-07 55.9 1.1 23 79-101 31-53 (223)
414 2h57_A ADP-ribosylation factor 94.7 0.012 4E-07 53.4 2.2 23 79-101 23-45 (190)
415 4bas_A ADP-ribosylation factor 94.7 0.015 5.2E-07 52.7 3.0 23 79-101 19-41 (199)
416 2o52_A RAS-related protein RAB 94.7 0.015 5.2E-07 53.4 3.0 23 79-101 27-49 (200)
417 3dz8_A RAS-related protein RAB 94.7 0.014 4.7E-07 53.0 2.6 23 79-101 25-47 (191)
418 1zd9_A ADP-ribosylation factor 94.7 0.015 5.2E-07 52.7 2.9 23 79-101 24-46 (188)
419 3umf_A Adenylate kinase; rossm 94.7 0.019 6.4E-07 54.6 3.6 28 74-101 26-53 (217)
420 1x3s_A RAS-related protein RAB 94.7 0.015 5.2E-07 52.4 2.9 23 79-101 17-39 (195)
421 2qu8_A Putative nucleolar GTP- 94.7 0.016 5.3E-07 54.5 3.1 23 79-101 31-53 (228)
422 2bcg_Y Protein YP2, GTP-bindin 94.6 0.014 4.7E-07 53.6 2.6 23 79-101 10-32 (206)
423 2atv_A RERG, RAS-like estrogen 94.6 0.016 5.4E-07 52.9 3.0 23 79-101 30-52 (196)
424 3cnl_A YLQF, putative uncharac 94.6 0.017 5.8E-07 56.4 3.3 29 78-106 100-128 (262)
425 3reg_A RHO-like small GTPase; 94.6 0.016 5.4E-07 52.7 2.9 23 79-101 25-47 (194)
426 2f7s_A C25KG, RAS-related prot 94.6 0.018 6.1E-07 53.3 3.3 23 79-101 27-49 (217)
427 3cph_A RAS-related protein SEC 94.6 0.016 5.4E-07 53.3 2.9 24 78-101 21-44 (213)
428 2h17_A ADP-ribosylation factor 94.6 0.014 4.8E-07 52.5 2.5 23 79-101 23-45 (181)
429 2p5s_A RAS and EF-hand domain 94.6 0.016 5.6E-07 53.0 2.9 23 79-101 30-52 (199)
430 4edh_A DTMP kinase, thymidylat 94.6 0.021 7.3E-07 53.9 3.8 27 75-101 4-30 (213)
431 3v9p_A DTMP kinase, thymidylat 94.6 0.015 5.3E-07 55.5 2.8 29 73-101 21-49 (227)
432 1ltq_A Polynucleotide kinase; 94.5 0.02 6.7E-07 56.3 3.6 23 78-100 3-25 (301)
433 2f6r_A COA synthase, bifunctio 94.5 0.017 5.9E-07 56.8 3.1 23 77-99 75-97 (281)
434 3a8t_A Adenylate isopentenyltr 94.5 0.024 8.4E-07 57.4 4.3 26 76-101 39-64 (339)
435 1ak2_A Adenylate kinase isoenz 94.5 0.021 7.3E-07 54.1 3.7 26 76-101 15-40 (233)
436 1e4v_A Adenylate kinase; trans 94.5 0.018 6.2E-07 53.7 3.1 23 79-101 2-24 (214)
437 2iwr_A Centaurin gamma 1; ANK 94.5 0.014 4.6E-07 52.1 2.1 23 79-101 9-31 (178)
438 2q3h_A RAS homolog gene family 94.5 0.02 6.8E-07 52.3 3.2 23 79-101 22-44 (201)
439 2aka_B Dynamin-1; fusion prote 94.5 0.016 5.5E-07 56.7 2.7 23 79-101 28-50 (299)
440 2fv8_A H6, RHO-related GTP-bin 94.4 0.017 5.7E-07 53.3 2.7 23 79-101 27-49 (207)
441 3pxi_A Negative regulator of g 94.4 0.11 3.8E-06 58.1 9.8 23 79-101 523-545 (758)
442 1a7j_A Phosphoribulokinase; tr 94.4 0.011 3.6E-07 58.7 1.3 26 76-101 4-29 (290)
443 3llu_A RAS-related GTP-binding 94.4 0.021 7.1E-07 52.2 3.2 23 79-101 22-44 (196)
444 3c5c_A RAS-like protein 12; GD 94.4 0.019 6.6E-07 52.1 3.0 23 79-101 23-45 (187)
445 2p65_A Hypothetical protein PF 94.4 0.019 6.4E-07 51.2 2.8 27 75-101 41-67 (187)
446 2j1l_A RHO-related GTP-binding 94.4 0.02 6.7E-07 53.3 3.0 22 79-100 36-57 (214)
447 2fh5_B SR-beta, signal recogni 94.3 0.02 6.7E-07 52.9 2.9 23 79-101 9-31 (214)
448 2fu5_C RAS-related protein RAB 94.3 0.013 4.5E-07 52.5 1.6 22 79-100 10-31 (183)
449 1gwn_A RHO-related GTP-binding 94.3 0.018 6.2E-07 53.4 2.6 23 79-101 30-52 (205)
450 2zts_A Putative uncharacterize 94.3 0.029 9.8E-07 52.9 4.1 60 203-262 133-206 (251)
451 3zvl_A Bifunctional polynucleo 94.3 0.022 7.4E-07 59.4 3.5 27 75-101 256-282 (416)
452 2b6h_A ADP-ribosylation factor 94.3 0.019 6.4E-07 52.5 2.6 22 79-100 31-52 (192)
453 1sky_E F1-ATPase, F1-ATP synth 94.2 0.012 4E-07 62.3 1.3 35 66-101 141-175 (473)
454 2gco_A H9, RHO-related GTP-bin 94.2 0.02 6.7E-07 52.6 2.6 23 79-101 27-49 (201)
455 3lv8_A DTMP kinase, thymidylat 94.2 0.025 8.4E-07 54.5 3.3 26 76-101 26-51 (236)
456 2h92_A Cytidylate kinase; ross 94.2 0.019 6.4E-07 53.6 2.4 25 77-101 3-27 (219)
457 3def_A T7I23.11 protein; chlor 94.2 0.022 7.6E-07 55.1 3.0 23 79-101 38-60 (262)
458 3sr0_A Adenylate kinase; phosp 94.1 0.027 9.2E-07 52.9 3.4 23 79-101 2-24 (206)
459 2atx_A Small GTP binding prote 94.1 0.023 7.8E-07 51.5 2.7 22 79-100 20-41 (194)
460 1h65_A Chloroplast outer envel 94.1 0.024 8.1E-07 55.1 2.9 23 79-101 41-63 (270)
461 2g3y_A GTP-binding protein GEM 94.0 0.028 9.4E-07 52.8 3.3 23 79-101 39-61 (211)
462 3tmk_A Thymidylate kinase; pho 94.0 0.029 9.8E-07 53.2 3.3 33 75-108 3-35 (216)
463 3d3q_A TRNA delta(2)-isopenten 94.0 0.028 9.5E-07 57.0 3.4 25 78-102 8-32 (340)
464 3cmu_A Protein RECA, recombina 94.0 0.081 2.8E-06 64.9 7.9 36 66-101 719-756 (2050)
465 4djt_A GTP-binding nuclear pro 94.0 0.013 4.3E-07 54.4 0.8 23 79-101 13-35 (218)
466 1p5z_B DCK, deoxycytidine kina 94.0 0.02 6.8E-07 55.4 2.2 27 75-101 22-48 (263)
467 4tmk_A Protein (thymidylate ki 93.9 0.03 1E-06 52.9 3.4 26 76-101 2-27 (213)
468 2ocp_A DGK, deoxyguanosine kin 93.9 0.032 1.1E-06 53.1 3.5 26 76-101 1-26 (241)
469 3exa_A TRNA delta(2)-isopenten 93.9 0.034 1.2E-06 55.8 3.8 25 77-101 3-27 (322)
470 3ld9_A DTMP kinase, thymidylat 93.9 0.036 1.2E-06 52.8 3.8 28 75-102 19-46 (223)
471 2hf9_A Probable hydrogenase ni 93.9 0.027 9.2E-07 52.5 2.9 24 78-101 39-62 (226)
472 3cpj_B GTP-binding protein YPT 93.9 0.028 9.7E-07 52.5 3.0 23 79-101 15-37 (223)
473 2x77_A ADP-ribosylation factor 93.9 0.019 6.3E-07 51.9 1.6 22 79-100 24-45 (189)
474 2hup_A RAS-related protein RAB 93.8 0.027 9.2E-07 51.8 2.7 23 79-101 31-53 (201)
475 2yc2_C IFT27, small RAB-relate 93.8 0.013 4.6E-07 53.4 0.5 22 79-100 22-43 (208)
476 3tqf_A HPR(Ser) kinase; transf 93.7 0.055 1.9E-06 49.7 4.4 36 64-100 4-39 (181)
477 3crm_A TRNA delta(2)-isopenten 93.7 0.035 1.2E-06 55.9 3.4 25 78-102 6-30 (323)
478 4gzl_A RAS-related C3 botulinu 93.6 0.03 1E-06 51.6 2.6 22 79-100 32-53 (204)
479 2j0v_A RAC-like GTP-binding pr 93.5 0.032 1.1E-06 51.4 2.6 22 79-100 11-32 (212)
480 3q3j_B RHO-related GTP-binding 93.5 0.035 1.2E-06 51.7 2.9 22 79-100 29-50 (214)
481 3euj_A Chromosome partition pr 93.5 0.11 3.9E-06 55.0 7.2 71 185-262 377-464 (483)
482 4a9a_A Ribosome-interacting GT 93.4 0.041 1.4E-06 56.6 3.4 37 79-115 74-121 (376)
483 1puj_A YLQF, conserved hypothe 93.4 0.053 1.8E-06 53.4 4.1 26 77-102 120-145 (282)
484 3foz_A TRNA delta(2)-isopenten 93.3 0.051 1.8E-06 54.4 3.8 25 77-101 10-34 (316)
485 2orw_A Thymidine kinase; TMTK, 93.3 0.047 1.6E-06 50.2 3.3 53 205-262 76-137 (184)
486 1ypw_A Transitional endoplasmi 93.1 0.014 4.8E-07 66.1 -0.6 32 70-101 504-535 (806)
487 3uk6_A RUVB-like 2; hexameric 93.0 0.045 1.5E-06 55.1 3.1 28 75-102 68-95 (368)
488 3syl_A Protein CBBX; photosynt 93.0 0.052 1.8E-06 53.2 3.4 27 75-101 65-91 (309)
489 2chg_A Replication factor C sm 92.9 0.053 1.8E-06 49.5 3.2 42 205-248 102-143 (226)
490 3r7w_A Gtpase1, GTP-binding pr 92.9 0.073 2.5E-06 52.9 4.4 24 77-100 3-26 (307)
491 3eph_A TRNA isopentenyltransfe 92.8 0.057 1.9E-06 56.0 3.5 25 77-101 2-26 (409)
492 3gmt_A Adenylate kinase; ssgci 92.8 0.056 1.9E-06 51.8 3.2 24 78-101 9-32 (230)
493 2r62_A Cell division protease 92.7 0.027 9.2E-07 54.2 0.8 27 73-101 42-68 (268)
494 1mky_A Probable GTP-binding pr 92.7 0.1 3.5E-06 54.5 5.4 23 79-101 3-25 (439)
495 3p32_A Probable GTPase RV1496/ 92.6 0.065 2.2E-06 54.4 3.6 26 76-101 78-103 (355)
496 1wxq_A GTP-binding protein; st 92.6 0.053 1.8E-06 56.1 3.0 41 162-211 181-221 (397)
497 2x2e_A Dynamin-1; nitration, h 92.6 0.039 1.3E-06 56.0 1.9 23 79-101 33-55 (353)
498 2hjg_A GTP-binding protein ENG 92.6 0.053 1.8E-06 56.7 2.9 22 79-100 5-26 (436)
499 3th5_A RAS-related C3 botulinu 91.7 0.022 7.6E-07 52.2 0.0 22 79-100 32-53 (204)
500 1d2n_A N-ethylmaleimide-sensit 92.5 0.068 2.3E-06 51.6 3.4 26 75-100 62-87 (272)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=7.8e-53 Score=434.92 Aligned_cols=222 Identities=23% Similarity=0.359 Sum_probs=200.0
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
.+|+++||+++|+.. .+..++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 23 ~mi~v~~ls~~y~~~---------~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~ 93 (366)
T 3tui_C 23 HMIKLSNITKVFHQG---------TRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELT 93 (366)
T ss_dssp CCEEEEEEEEEEECS---------SSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECS
T ss_pred ceEEEEeEEEEeCCC---------CCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 369999999998621 11357999999999999999999999999999999999999999999999999985
Q ss_pred h-------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC
Q 010509 117 N-------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 117 ~-------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 189 (508)
. ..++.+|||||++.+++.+||+||+.++...+ ..++++.+++++++|+.+||.+.++++++ +||
T Consensus 94 ~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~---~~~~~~~~~~v~~lL~~vgL~~~~~~~~~-----~LS 165 (366)
T 3tui_C 94 TLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELD---NTPKDEVKRRVTELLSLVGLGDKHDSYPS-----NLS 165 (366)
T ss_dssp SCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHTCGGGTTCCTT-----TSC
T ss_pred cCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hCC
Confidence 3 23678999999999999999999999987653 34667778899999999999988877664 999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
|||||||+|||||+.+|++|||||||||||+.++.+++++|+++++ .|+|||++|||++ .+.++||||++|++|++++
T Consensus 166 GGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~-~~~~~aDrv~vl~~G~iv~ 244 (366)
T 3tui_C 166 GGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMD-VVKRICDCVAVISNGELIE 244 (366)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHH-HHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999975 4999999999986 5778999999999999999
Q ss_pred EcChhhHH
Q 010509 269 SGEASGAM 276 (508)
Q Consensus 269 ~G~~~~~~ 276 (508)
.|+++++.
T Consensus 245 ~g~~~ev~ 252 (366)
T 3tui_C 245 QDTVSEVF 252 (366)
T ss_dssp CCBHHHHH
T ss_pred EcCHHHHH
Confidence 99998864
No 2
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=2.4e-52 Score=408.88 Aligned_cols=222 Identities=27% Similarity=0.418 Sum_probs=192.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+++|+... ..+.+|+|||+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 1 ~l~~~~l~~~y~~~~---------~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ 71 (235)
T 3tif_A 1 MVKLKNVTKTYKMGE---------EIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTND 71 (235)
T ss_dssp CEEEEEEEEEEEETT---------EEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT
T ss_pred CEEEEEEEEEeCCCC---------cceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEccc
Confidence 378999999986211 12569999999999999999999999999999999999999999999999998753
Q ss_pred ----h----ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCcc
Q 010509 118 ----Q----MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK-NSLIGGPLTRGV 188 (508)
Q Consensus 118 ----~----~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~L 188 (508)
. .++.+|||+|++.+++.+||+||+.++...+.....++++..+++.++++.+||.+.. ++.+ .+|
T Consensus 72 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~L 146 (235)
T 3tif_A 72 LDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKP-----NQL 146 (235)
T ss_dssp CCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCG-----GGS
T ss_pred CCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCCh-----hhC
Confidence 1 1346999999999999999999999976543222345667778899999999998753 6555 499
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++++ |+|||++|||++ . ..+|||+++|++|+++
T Consensus 147 SgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~-~-~~~~d~i~~l~~G~i~ 224 (235)
T 3tif_A 147 SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDIN-V-ARFGERIIYLKDGEVE 224 (235)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-H-HTTSSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHH-H-HHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999765 999999999986 3 4789999999999999
Q ss_pred EEcChhhH
Q 010509 268 YSGEASGA 275 (508)
Q Consensus 268 ~~G~~~~~ 275 (508)
..+++++.
T Consensus 225 ~~~~~~~~ 232 (235)
T 3tif_A 225 REEKLRGF 232 (235)
T ss_dssp EEEECC--
T ss_pred EEcChhhh
Confidence 99987764
No 3
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=3.5e-52 Score=414.18 Aligned_cols=217 Identities=25% Similarity=0.412 Sum_probs=194.5
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+++|+ ++++|+||||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 6 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~ 72 (262)
T 1b0u_A 6 KLHVIDLHKRYG-------------GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINL 72 (262)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCE
T ss_pred eEEEeeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccc
Confidence 599999999874 3579999999999999999999999999999999999999999999999998751
Q ss_pred -----------------hccccEEEEecCCCCCCCCCHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHcCCCcc-ccc
Q 010509 118 -----------------QMTRNTGFVTQEDVLSPYLTVTETMVFTA-LLQLPNSFTEKEKIKCAEAVMTELGLSEC-KNS 178 (508)
Q Consensus 118 -----------------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~ 178 (508)
..++.+|||+|++.+++.+||+||+.++. ..+ ..+.++.+++++++++.+||.+. .++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~ 149 (262)
T 1b0u_A 73 VRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL---GLSKHDARERALKYLAKVGIDERAQGK 149 (262)
T ss_dssp EECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCCHHHHHHHHHHHHHHTTCCHHHHTS
T ss_pred cccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhc---CCCHHHHHHHHHHHHHHcCCCchhhcC
Confidence 23567999999999999999999999864 322 23455566789999999999988 887
Q ss_pred ccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEE
Q 010509 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKV 258 (508)
Q Consensus 179 ~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v 258 (508)
.++ +|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ .+..+||++
T Consensus 150 ~~~-----~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v 223 (262)
T 1b0u_A 150 YPV-----HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMG-FARHVSSHV 223 (262)
T ss_dssp CGG-----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHH-HHHHHCSEE
T ss_pred Ccc-----cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEE
Confidence 764 89999999999999999999999999999999999999999999999877999999999986 577899999
Q ss_pred EEEeCCeEEEEcChhhHH
Q 010509 259 LLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 259 ~lL~~G~iv~~G~~~~~~ 276 (508)
++|++|+++..|+++++.
T Consensus 224 ~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 224 IFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp EEEETTEEEEEECHHHHH
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999998764
No 4
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=3.2e-52 Score=432.81 Aligned_cols=218 Identities=28% Similarity=0.437 Sum_probs=199.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||+++|+ ++.+|+||||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~yg-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~ 69 (381)
T 3rlf_A 3 SVQLQNVTKAWG-------------EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND 69 (381)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCC
Confidence 489999999975 4679999999999999999999999999999999999999999999999999854
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.+|||+|++.++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..++++. +||||||||
T Consensus 70 ~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~p~-----~LSGGqrQR 141 (381)
T 3rlf_A 70 TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLA---GAKKEVINQRVNQVAEVLQLAHLLDRKPK-----ALSGGQRQR 141 (381)
T ss_dssp CCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTCCGG-----GSCHHHHHH
T ss_pred CCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCChh-----HCCHHHHHH
Confidence 34567999999999999999999999987654 34677778899999999999998887764 999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|+|||||+.+|++|||||||||||+..+.++++.|+++.++ |+|+|++|||++ ++..++|||++|++|+++..|++++
T Consensus 142 VaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-ea~~~aDri~vl~~G~i~~~g~~~~ 220 (381)
T 3rlf_A 142 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQV-EAMTLADKIVVLDAGRVAQVGKPLE 220 (381)
T ss_dssp HHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHH-HHHHhCCEEEEEECCEEEEEeCHHH
Confidence 99999999999999999999999999999999999999765 999999999986 5789999999999999999999998
Q ss_pred HHH
Q 010509 275 AMN 277 (508)
Q Consensus 275 ~~~ 277 (508)
+.+
T Consensus 221 l~~ 223 (381)
T 3rlf_A 221 LYH 223 (381)
T ss_dssp HHH
T ss_pred HHh
Confidence 754
No 5
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=3.2e-52 Score=416.89 Aligned_cols=220 Identities=29% Similarity=0.471 Sum_probs=195.7
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++||+++|+. .+.+|+|||+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 6 ~~l~i~~ls~~y~~------------~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~ 73 (275)
T 3gfo_A 6 YILKVEELNYNYSD------------GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPID 73 (275)
T ss_dssp EEEEEEEEEEECTT------------SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECC
T ss_pred cEEEEEEEEEEECC------------CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECC
Confidence 36999999998741 245999999999999999999999999999999999999999999999999983
Q ss_pred --h----hccccEEEEecCCC-CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC
Q 010509 117 --N----QMTRNTGFVTQEDV-LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 117 --~----~~~~~i~yv~Q~~~-l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 189 (508)
. ..++.+|||+|++. .+..+||+||+.++.... ..++++.+++++++++.+||.+..++.++ +||
T Consensus 74 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LS 145 (275)
T 3gfo_A 74 YSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTH-----CLS 145 (275)
T ss_dssp CSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSBGG-----GSC
T ss_pred cccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchhhcCCcc-----cCC
Confidence 2 34678999999862 344789999999987543 34567777889999999999998887765 899
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA-NGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
|||||||+||+||+.+|++|||||||+|||+.++..+++.|++++ ++|+|||++|||++ .+..+|||+++|++|++++
T Consensus 146 gGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~drv~~l~~G~i~~ 224 (275)
T 3gfo_A 146 FGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID-IVPLYCDNVFVMKEGRVIL 224 (275)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS-SGGGGCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999997 56999999999997 4778999999999999999
Q ss_pred EcChhhHHH
Q 010509 269 SGEASGAMN 277 (508)
Q Consensus 269 ~G~~~~~~~ 277 (508)
.|+++++..
T Consensus 225 ~g~~~~~~~ 233 (275)
T 3gfo_A 225 QGNPKEVFA 233 (275)
T ss_dssp EECHHHHTH
T ss_pred ECCHHHHhc
Confidence 999998754
No 6
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=5e-52 Score=413.05 Aligned_cols=217 Identities=26% Similarity=0.473 Sum_probs=194.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC-
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS- 116 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~- 116 (508)
+|+++||+++|+ ++++|+||||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.
T Consensus 24 ~l~i~~l~~~y~-------------~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~ 90 (263)
T 2olj_A 24 MIDVHQLKKSFG-------------SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKA 90 (263)
T ss_dssp SEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSS
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCC
Confidence 599999999874 357999999999999999999999999999999999999999999999999874
Q ss_pred -h----hccccEEEEecCCCCCCCCCHHHHHHHHH-HhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH
Q 010509 117 -N----QMTRNTGFVTQEDVLSPYLTVTETMVFTA-LLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 117 -~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG 190 (508)
. ..++.+|||+|++.+++.+||+||+.++. ... ..+.++.+++++++++.+||.+..++.++ +|||
T Consensus 91 ~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~l~~~~L~~~~~~~~~-----~LSg 162 (263)
T 2olj_A 91 KDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVR---KWPREKAEAKAMELLDKVGLKDKAHAYPD-----SLSG 162 (263)
T ss_dssp TTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTS---CCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCH
T ss_pred ccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCChh-----hCCH
Confidence 1 23567999999999999999999999864 322 23455566789999999999988887764 8999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
||||||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ .+.++||++++|++|++++.|
T Consensus 163 GqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g 241 (263)
T 2olj_A 163 GQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMG-FAREVGDRVLFMDGGYIIEEG 241 (263)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999877999999999986 577899999999999999999
Q ss_pred ChhhHH
Q 010509 271 EASGAM 276 (508)
Q Consensus 271 ~~~~~~ 276 (508)
+++++.
T Consensus 242 ~~~~~~ 247 (263)
T 2olj_A 242 KPEDLF 247 (263)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 998764
No 7
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1.9e-52 Score=431.61 Aligned_cols=218 Identities=27% Similarity=0.439 Sum_probs=196.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC--
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF-- 115 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~-- 115 (508)
.|+++||+++|+ ++++|+|||+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++
T Consensus 4 ~l~i~~ls~~y~-------------~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~ 70 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-------------NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFS 70 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEES
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcc
Confidence 589999999975 46799999999999999999999999999999999999999999999999987
Q ss_pred --Ch--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH
Q 010509 116 --SN--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 116 --~~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG 191 (508)
.. ..++.+|||+|++.++|.+||+||+.|+...+ ..++++.+++++++++.+||.+.+++++. +||||
T Consensus 71 ~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGG 142 (359)
T 3fvq_A 71 KNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNG---KGRTAQERQRIEAMLELTGISELAGRYPH-----ELSGG 142 (359)
T ss_dssp SSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTS---SCCSHHHHHHHHHHHHHHTCGGGTTSCGG-----GSCHH
T ss_pred cccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHc---CCChHHHHHHHHHHHHHcCCchHhcCChh-----hCCHH
Confidence 22 34578999999999999999999999976433 23455667889999999999998887765 99999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-cCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA-NGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~-~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
|||||+|||||+.+|++|||||||||||+..+.++++.|+++. +.|+|+|++|||++ ++..+||||++|++|+++..|
T Consensus 143 q~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~-ea~~~aDri~vl~~G~i~~~g 221 (359)
T 3fvq_A 143 QQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDRE-EALQYADRIAVMKQGRILQTA 221 (359)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHHCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999999999888875 46999999999986 577899999999999999999
Q ss_pred ChhhHHH
Q 010509 271 EASGAMN 277 (508)
Q Consensus 271 ~~~~~~~ 277 (508)
+++++..
T Consensus 222 ~~~el~~ 228 (359)
T 3fvq_A 222 SPHELYR 228 (359)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9998753
No 8
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-51 Score=408.35 Aligned_cols=220 Identities=25% Similarity=0.382 Sum_probs=197.2
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++||+++++ ++++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.
T Consensus 14 ~~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 14 GAVVVKDLRKRIG-------------KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVV 80 (256)
T ss_dssp CCEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred CeEEEEEEEEEEC-------------CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECC
Confidence 3699999999874 357999999999999999999999999999999999999999999999999875
Q ss_pred h---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 117 N---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 117 ~---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
. ..++.+|||+|++.+++.+||+||+.+..... ..+.++.+++++++++.+||.+..++.++ +||||||
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~---~~~~~~~~~~~~~~l~~~gL~~~~~~~~~-----~LSgGq~ 152 (256)
T 1vpl_A 81 EEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFY---ASSSSEIEEMVERATEIAGLGEKIKDRVS-----TYSKGMV 152 (256)
T ss_dssp TCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHHCCGGGGGSBGG-----GCCHHHH
T ss_pred ccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHc---CCChHHHHHHHHHHHHHCCCchHhcCChh-----hCCHHHH
Confidence 3 34678999999999999999999999876443 22444556778999999999988887765 8999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
|||+||+||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ .+..+||++++|++|++++.|+++
T Consensus 153 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~ 231 (256)
T 1vpl_A 153 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNML-EVEFLCDRIALIHNGTIVETGTVE 231 (256)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHH-HHTTTCSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HHHHHCCEEEEEECCEEEEecCHH
Confidence 9999999999999999999999999999999999999999877999999999986 577889999999999999999998
Q ss_pred hHHHH
Q 010509 274 GAMNY 278 (508)
Q Consensus 274 ~~~~~ 278 (508)
++.+.
T Consensus 232 ~~~~~ 236 (256)
T 1vpl_A 232 ELKER 236 (256)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87653
No 9
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.5e-51 Score=400.48 Aligned_cols=212 Identities=35% Similarity=0.508 Sum_probs=189.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++|+ ++++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 4 ~l~~~~l~~~y~-------------~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 70 (224)
T 2pcj_A 4 ILRAENIKKVIR-------------GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDY 70 (224)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCS
T ss_pred EEEEEeEEEEEC-------------CEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCC
Confidence 589999999874 3579999999999999999999999999999999999999999999999998743
Q ss_pred -------hcc-ccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC
Q 010509 118 -------QMT-RNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 118 -------~~~-~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 189 (508)
..+ +.++||+|++.+++.+||+||+.++...+ ..++++.+++++++++.+||.+..++.++ +||
T Consensus 71 ~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LS 142 (224)
T 2pcj_A 71 TNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKM---GKPKKEAKERGEYLLSELGLGDKLSRKPY-----ELS 142 (224)
T ss_dssp SCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSC
T ss_pred CCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCchhhhCChh-----hCC
Confidence 122 57999999999999999999999876543 23445556788999999999988887764 999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
|||||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++|||++ .+ ++||++++|++|++++.
T Consensus 143 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~v~~l~~G~i~~~ 220 (224)
T 2pcj_A 143 GGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERE-LA-ELTHRTLEMKDGKVVGE 220 (224)
T ss_dssp HHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HH-TTSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH-HH-HhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999877999999999976 45 78999999999999998
Q ss_pred cCh
Q 010509 270 GEA 272 (508)
Q Consensus 270 G~~ 272 (508)
|+.
T Consensus 221 g~~ 223 (224)
T 2pcj_A 221 ITR 223 (224)
T ss_dssp EEC
T ss_pred eee
Confidence 863
No 10
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=1.9e-51 Score=424.19 Aligned_cols=221 Identities=24% Similarity=0.400 Sum_probs=199.0
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
...|+++||+++++ +++++|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++
T Consensus 12 ~~~l~~~~l~~~y~------------g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 79 (355)
T 1z47_A 12 SMTIEFVGVEKIYP------------GGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRV 79 (355)
T ss_dssp CEEEEEEEEEECCT------------TSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEC
T ss_pred CceEEEEEEEEEEc------------CCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEEC
Confidence 45799999999862 135699999999999999999999999999999999999999999999999998
Q ss_pred Ch--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 116 SN--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 116 ~~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
.. ..++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||.+.++++++ +||||||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~---~~~~~~~~~~v~~~l~~~gL~~~~~r~~~-----~LSGGq~ 151 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREK---RVPKDEMDARVRELLRFMRLESYANRFPH-----ELSGGQQ 151 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GSCHHHH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHHH
Confidence 53 34678999999999999999999999987553 23566677889999999999998887764 9999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA 272 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~ 272 (508)
|||+|||||+.+|++|||||||||||+.++.++++.|+++.++ |+|+|++|||++ ++..++||+++|++|+++..|++
T Consensus 152 QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~ 230 (355)
T 1z47_A 152 QRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQE-EALEVADRVLVLHEGNVEQFGTP 230 (355)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999999765 999999999986 57789999999999999999999
Q ss_pred hhHHH
Q 010509 273 SGAMN 277 (508)
Q Consensus 273 ~~~~~ 277 (508)
+++.+
T Consensus 231 ~~l~~ 235 (355)
T 1z47_A 231 EEVYE 235 (355)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88743
No 11
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.3e-51 Score=408.87 Aligned_cols=218 Identities=25% Similarity=0.396 Sum_probs=192.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+++|+ ++++|+|||+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..
T Consensus 7 ~l~i~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~ 73 (257)
T 1g6h_A 7 ILRTENIVKYFG-------------EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITN 73 (257)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT
T ss_pred EEEEeeeEEEEC-------------CEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCC
Confidence 699999999875 3579999999999999999999999999999999999999999999999998743
Q ss_pred -----hccccEEEEecCCCCCCCCCHHHHHHHHHHh-cCCC---------CCCHHHHHHHHHHHHHHcCCCcccccccCC
Q 010509 118 -----QMTRNTGFVTQEDVLSPYLTVTETMVFTALL-QLPN---------SFTEKEKIKCAEAVMTELGLSECKNSLIGG 182 (508)
Q Consensus 118 -----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~ 182 (508)
..++.++||+|++.+++.+||+||+.++... +... ..++++.+++++++++.+||.+..++.++
T Consensus 74 ~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~- 152 (257)
T 1g6h_A 74 KEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAG- 152 (257)
T ss_dssp CCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-
T ss_pred CCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCch-
Confidence 2356799999999999999999999986532 1110 01233455778999999999988887765
Q ss_pred CCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 183 PLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 183 ~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
+|||||||||+||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++|||++ .+..+||++++|+
T Consensus 153 ----~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~d~v~~l~ 227 (257)
T 1g6h_A 153 ----ELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD-IVLNYIDHLYVMF 227 (257)
T ss_dssp ----GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS-TTGGGCSEEEEEE
T ss_pred ----hCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEE
Confidence 89999999999999999999999999999999999999999999999877999999999987 4678999999999
Q ss_pred CCeEEEEcChhh
Q 010509 263 EGYPLYSGEASG 274 (508)
Q Consensus 263 ~G~iv~~G~~~~ 274 (508)
+|++++.|++++
T Consensus 228 ~G~i~~~g~~~~ 239 (257)
T 1g6h_A 228 NGQIIAEGRGEE 239 (257)
T ss_dssp TTEEEEEEESHH
T ss_pred CCEEEEEeCHHH
Confidence 999999999887
No 12
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.8e-51 Score=423.18 Aligned_cols=218 Identities=31% Similarity=0.453 Sum_probs=197.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++|++++++ ++++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~ 69 (362)
T 2it1_A 3 EIKLENIVKKFG-------------NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTE 69 (362)
T ss_dssp CEEEEEEEEESS-------------SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred EEEEEeEEEEEC-------------CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCc
Confidence 489999999864 4679999999999999999999999999999999999999999999999999853
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..+++++ +||||||||
T Consensus 70 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~QR 141 (362)
T 2it1_A 70 LPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELR---KAPREEIDKKVREVAKMLHIDKLLNRYPW-----QLSGGQQQR 141 (362)
T ss_dssp SCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHTTCTTCTTCCGG-----GSCHHHHHH
T ss_pred CCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhhCChh-----hCCHHHHHH
Confidence 23578999999999999999999999986543 23556667889999999999998887764 999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|+|||||+.+|++|||||||||||+.++.++++.|+++.++ |+|+|++|||++ ++..++||+++|++|+++..|++++
T Consensus 142 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~ 220 (362)
T 2it1_A 142 VAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQA-EALAMADRIAVIREGEILQVGTPDE 220 (362)
T ss_dssp HHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHH-HHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999764 999999999986 5778999999999999999999988
Q ss_pred HHH
Q 010509 275 AMN 277 (508)
Q Consensus 275 ~~~ 277 (508)
+.+
T Consensus 221 ~~~ 223 (362)
T 2it1_A 221 VYY 223 (362)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
No 13
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-51 Score=423.74 Aligned_cols=218 Identities=25% Similarity=0.410 Sum_probs=196.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++++ ++++|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~ 69 (359)
T 2yyz_A 3 SIRVVNLKKYFG-------------KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVND 69 (359)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred EEEEEEEEEEEC-------------CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCC
Confidence 489999999874 3579999999999999999999999999999999999999999999999999853
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..+++++ +||||||||
T Consensus 70 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSgGq~QR 141 (359)
T 2yyz_A 70 IPPKYREVGMVFQNYALYPHMTVFENIAFPLRAR---RISKDEVEKRVVEIARKLLIDNLLDRKPT-----QLSGGQQQR 141 (359)
T ss_dssp SCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSS---CSHHHHTTHHHHHHHHHTTCGGGTTSCGG-----GSCHHHHHH
T ss_pred CChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHH
Confidence 33578999999999999999999999875432 23345556789999999999998887764 999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|+|||||+.+|++|||||||||||+.++.++++.|+++.++ |.|+|++|||++ ++..++||+++|++|+++..|++++
T Consensus 142 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~ 220 (359)
T 2yyz_A 142 VALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQA-EAMTMASRIAVFNQGKLVQYGTPDE 220 (359)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999764 999999999986 5778999999999999999999998
Q ss_pred HHH
Q 010509 275 AMN 277 (508)
Q Consensus 275 ~~~ 277 (508)
+.+
T Consensus 221 l~~ 223 (359)
T 2yyz_A 221 VYD 223 (359)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
No 14
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=8.8e-51 Score=422.33 Aligned_cols=218 Identities=28% Similarity=0.430 Sum_probs=196.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++||+++|+ ++++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~ 69 (372)
T 1g29_1 3 GVRLVDVWKVFG-------------EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVAD 69 (372)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEE
T ss_pred EEEEEeEEEEEC-------------CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECcc
Confidence 489999999874 3579999999999999999999999999999999999999999999999998632
Q ss_pred --------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccC
Q 010509 118 --------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVS 189 (508)
Q Consensus 118 --------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LS 189 (508)
..++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..+++++ +||
T Consensus 70 ~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LS 141 (372)
T 1g29_1 70 PEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLR---KVPRQEIDQRVREVAELLGLTELLNRKPR-----ELS 141 (372)
T ss_dssp GGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHT---TCCHHHHHHHHHHHHHHHTCGGGTTCCGG-----GSC
T ss_pred ccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHCCCchHhcCCcc-----cCC
Confidence 23568999999999999999999999987553 23556677889999999999998887764 999
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
|||||||+|||||+.+|++|||||||||||+.++.++++.|+++.++ |.|+|++|||++ ++..++||+++|++|+++.
T Consensus 142 GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~ 220 (372)
T 1g29_1 142 GGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV-EAMTMGDRIAVMNRGVLQQ 220 (372)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHH-HHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999764 999999999986 5778999999999999999
Q ss_pred EcChhhHHH
Q 010509 269 SGEASGAMN 277 (508)
Q Consensus 269 ~G~~~~~~~ 277 (508)
.|+++++.+
T Consensus 221 ~g~~~~l~~ 229 (372)
T 1g29_1 221 VGSPDEVYD 229 (372)
T ss_dssp EECHHHHHH
T ss_pred eCCHHHHHh
Confidence 999988753
No 15
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=3.3e-51 Score=407.91 Aligned_cols=216 Identities=25% Similarity=0.407 Sum_probs=193.3
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++|+++.++ ++++|+|||+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 10 ~~l~~~~l~~~~~-------------~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 76 (266)
T 4g1u_C 10 ALLEASHLHYHVQ-------------QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLN 76 (266)
T ss_dssp CEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETT
T ss_pred ceEEEEeEEEEeC-------------CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECC
Confidence 3699999999875 467999999999999999999999999999999999999999999999999985
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE 192 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe 192 (508)
. ..++.++|++|++.+++.+||+||+.++.... ...+.+++++++++.+||.+..++.++ +|||||
T Consensus 77 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq 146 (266)
T 4g1u_C 77 SWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPY-----GGSQDRQALQQVMAQTDCLALAQRDYR-----VLSGGE 146 (266)
T ss_dssp TSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTS-----CSTTHHHHHHHHHHHTTCSTTTTSBGG-----GCCHHH
T ss_pred cCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhc-----CcHHHHHHHHHHHHHcCChhHhcCCcc-----cCCHHH
Confidence 3 34567999999999888899999999875432 122345678999999999998887764 899999
Q ss_pred HHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 193 RKRVSIGQEILI------NPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 193 rqRv~Ia~aL~~------~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
||||+|||||+. +|++|||||||+|||+.++.++++.|++++++ |+|||++|||++ .+.++|||+++|++|+
T Consensus 147 ~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~-~~~~~~d~v~vl~~G~ 225 (266)
T 4g1u_C 147 QQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQGK 225 (266)
T ss_dssp HHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHH-HHHHHCSEEEEEETTE
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHH-HHHHhCCEEEEEECCE
Confidence 999999999999 99999999999999999999999999999765 679999999986 5778999999999999
Q ss_pred EEEEcChhhHH
Q 010509 266 PLYSGEASGAM 276 (508)
Q Consensus 266 iv~~G~~~~~~ 276 (508)
+++.|+++++.
T Consensus 226 i~~~g~~~~~~ 236 (266)
T 4g1u_C 226 LVACGTPEEVL 236 (266)
T ss_dssp EEEEECHHHHC
T ss_pred EEEEcCHHHHh
Confidence 99999998764
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=4e-51 Score=401.49 Aligned_cols=216 Identities=26% Similarity=0.425 Sum_probs=190.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++ ++++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 6 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 72 (240)
T 1ji0_A 6 VLEVQSLHVYYG-------------AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITN 72 (240)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTT
T ss_pred eEEEEeEEEEEC-------------CeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCC
Confidence 699999999875 3579999999999999999999999999999999999999999999999998853
Q ss_pred ----h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-CCcccccccCCCCCCccCHH
Q 010509 118 ----Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELG-LSECKNSLIGGPLTRGVSGG 191 (508)
Q Consensus 118 ----~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~vg~~~~~~LSGG 191 (508)
. .++.++||+|++.+++.+||+||+.++.... .+.++.+++++++++.++ |.+..++.++ +||||
T Consensus 73 ~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~----~~~~~~~~~~~~~l~~~~~l~~~~~~~~~-----~LSgG 143 (240)
T 1ji0_A 73 KPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR----KDKEGIKRDLEWIFSLFPRLKERLKQLGG-----TLSGG 143 (240)
T ss_dssp CCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTC----CCSSHHHHHHHHHHHHCHHHHTTTTSBSS-----SSCHH
T ss_pred CCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcC----CCHHHHHHHHHHHHHHcccHhhHhcCChh-----hCCHH
Confidence 1 2456999999999999999999999864211 122344567888999995 9887776654 89999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 192 ERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 192 erqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
|||||+|||||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++|||++ .+.++||++++|++|+++..|+
T Consensus 144 q~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~ 222 (240)
T 1ji0_A 144 EQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNAL-GALKVAHYGYVLETGQIVLEGK 222 (240)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH-HHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999999999999999878999999999986 5778999999999999999999
Q ss_pred hhhHH
Q 010509 272 ASGAM 276 (508)
Q Consensus 272 ~~~~~ 276 (508)
++++.
T Consensus 223 ~~~~~ 227 (240)
T 1ji0_A 223 ASELL 227 (240)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
No 17
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=4.2e-51 Score=422.14 Aligned_cols=218 Identities=25% Similarity=0.415 Sum_probs=196.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccce--eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKA--ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~--iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+|+++||+++++ +++ +|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++
T Consensus 3 ~l~i~~l~~~y~-------------~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i 69 (353)
T 1oxx_K 3 RIIVKNVSKVFK-------------KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLV 69 (353)
T ss_dssp CEEEEEEEEEEG-------------GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEE
T ss_pred EEEEEeEEEEEC-------------CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEEC
Confidence 489999999875 345 99999999999999999999999999999999999999999999999986
Q ss_pred Ch-------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCcc
Q 010509 116 SN-------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGV 188 (508)
Q Consensus 116 ~~-------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L 188 (508)
.. ..++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||.+..+++++ +|
T Consensus 70 ~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~~~~~-----~L 141 (353)
T 1oxx_K 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNM---KMSKEEIRKRVEEVAKILDIHHVLNHFPR-----EL 141 (353)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTS---SCCHHHHHHHHHHHHHHTTCGGGTTSCGG-----GS
T ss_pred cccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHcCCchHhcCChh-----hC
Confidence 32 34678999999999999999999999976432 23566677889999999999998887764 99
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||||||||+|||||+.+|++|||||||||||+.++.++++.|+++.++ |+|+|++|||++ ++..++||+++|++|+++
T Consensus 142 SGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~~~~~adri~vl~~G~i~ 220 (353)
T 1oxx_K 142 SGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA-DIFAIADRVGVLVKGKLV 220 (353)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH-HHHHHCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999764 999999999986 577899999999999999
Q ss_pred EEcChhhHHH
Q 010509 268 YSGEASGAMN 277 (508)
Q Consensus 268 ~~G~~~~~~~ 277 (508)
..|+++++.+
T Consensus 221 ~~g~~~~l~~ 230 (353)
T 1oxx_K 221 QVGKPEDLYD 230 (353)
T ss_dssp EEECHHHHHH
T ss_pred EEcCHHHHHh
Confidence 9999988753
No 18
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=6.2e-51 Score=423.01 Aligned_cols=218 Identities=27% Similarity=0.430 Sum_probs=190.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||+++|+ ++++|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 11 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~ 77 (372)
T 1v43_A 11 EVKLENLTKRFG-------------NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTY 77 (372)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred eEEEEEEEEEEC-------------CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCC
Confidence 499999999874 3579999999999999999999999999999999999999999999999999853
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.+|||+|+..++|.+||+||+.|+...+ ..++++.+++++++++.+||.+.++++++ +||||||||
T Consensus 78 ~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~---~~~~~~~~~~v~~~l~~~~L~~~~~r~~~-----~LSGGq~QR 149 (372)
T 1v43_A 78 LPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIK---KFPKDEIDKRVRWAAELLQIEELLNRYPA-----QLSGGQRQR 149 (372)
T ss_dssp SCGGGGTEEEEEC------CCCHHHHHHTTCC-----CCCHHHHHHHHHHHHHHTTCGGGTTSCTT-----TCCSSCHHH
T ss_pred CChhhCcEEEEecCcccCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCChhHhcCChh-----hCCHHHHHH
Confidence 23578999999999999999999999875332 24566677889999999999998887764 999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|+|||||+.+|++|||||||||||+.++.++++.|+++.++ |.|+|++|||++ ++..++||+++|++|+++..|++++
T Consensus 150 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~-~a~~~adri~vl~~G~i~~~g~~~~ 228 (372)
T 1v43_A 150 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQV-EAMTMGDRIAVMNRGQLLQIGSPTE 228 (372)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999765 999999999986 5778999999999999999999988
Q ss_pred HHH
Q 010509 275 AMN 277 (508)
Q Consensus 275 ~~~ 277 (508)
+.+
T Consensus 229 l~~ 231 (372)
T 1v43_A 229 VYL 231 (372)
T ss_dssp HHH
T ss_pred HHh
Confidence 753
No 19
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2e-50 Score=416.04 Aligned_cols=213 Identities=25% Similarity=0.397 Sum_probs=191.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++|+ ++ +|+|+|+++++||+++|+||||||||||||+|+|+.+|++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~-------------~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~ 66 (348)
T 3d31_A 1 MIEIESLSRKWK-------------NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTD 66 (348)
T ss_dssp CEEEEEEEEECS-------------SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTT
T ss_pred CEEEEEEEEEEC-------------CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCC
Confidence 378999999864 35 9999999999999999999999999999999999999999999999999853
Q ss_pred --hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 118 --QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 118 --~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
..++.+|||+|+..++|.+||+||+.|+...+. .+++ ++++++++.+||.+..+++++ +||||||||
T Consensus 67 ~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~---~~v~~~l~~~~L~~~~~~~~~-----~LSgGq~QR 135 (348)
T 3d31_A 67 LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKK---IKDP---KRVLDTARDLKIEHLLDRNPL-----TLSGGEQQR 135 (348)
T ss_dssp SCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHC---CCCH---HHHHHHHHHTTCTTTTTSCGG-----GSCHHHHHH
T ss_pred CchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHH---HHHHHHHHHcCCchHhcCChh-----hCCHHHHHH
Confidence 345789999999999999999999999865431 1112 678999999999998887764 999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASG 274 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~ 274 (508)
|+|||||+.+|++|||||||||||+.++.++++.|+++.+ .|+|+|++|||++ ++..++||+++|++|+++..|++++
T Consensus 136 valAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~-~~~~~adri~vl~~G~i~~~g~~~~ 214 (348)
T 3d31_A 136 VALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQT-EARIMADRIAVVMDGKLIQVGKPEE 214 (348)
T ss_dssp HHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH-HHHHHCSEEEEESSSCEEEEECHHH
T ss_pred HHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999975 5999999999986 5778999999999999999999987
Q ss_pred HH
Q 010509 275 AM 276 (508)
Q Consensus 275 ~~ 276 (508)
+.
T Consensus 215 ~~ 216 (348)
T 3d31_A 215 IF 216 (348)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 20
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2.8e-50 Score=395.44 Aligned_cols=211 Identities=22% Similarity=0.339 Sum_probs=187.6
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++|+ + +|+|+|+++++ |+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 2 l~~~~l~~~y~-------------~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~ 65 (240)
T 2onk_A 2 FLKVRAEKRLG-------------N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL 65 (240)
T ss_dssp CEEEEEEEEET-------------T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTS
T ss_pred EEEEEEEEEeC-------------C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcC
Confidence 68899999874 2 49999999999 9999999999999999999999999999999999998753
Q ss_pred -hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 -QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 -~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
..++.+|||+|++.+++.+||+||+.++...+ .....+++++++++.+||.+..++.++ +|||||||||
T Consensus 66 ~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGqkqRv 135 (240)
T 2onk_A 66 PPERRGIGFVPQDYALFPHLSVYRNIAYGLRNV-----ERVERDRRVREMAEKLGIAHLLDRKPA-----RLSGGERQRV 135 (240)
T ss_dssp CTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTS-----CHHHHHHHHHHHHHTTTCTTTTTCCGG-----GSCHHHHHHH
T ss_pred chhhCcEEEEcCCCccCCCCcHHHHHHHHHHHc-----CCchHHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHHH
Confidence 34567999999999999999999998864321 112235678999999999988887764 8999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++|||++ .+..+||++++|++|++++.|+++++
T Consensus 136 ~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~i~~l~~G~i~~~g~~~~~ 214 (240)
T 2onk_A 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI-EAAMLADEVAVMLNGRIVEKGKLKEL 214 (240)
T ss_dssp HHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHH-HHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999764 999999999986 57789999999999999999999876
Q ss_pred H
Q 010509 276 M 276 (508)
Q Consensus 276 ~ 276 (508)
.
T Consensus 215 ~ 215 (240)
T 2onk_A 215 F 215 (240)
T ss_dssp H
T ss_pred H
Confidence 4
No 21
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=5.5e-50 Score=395.65 Aligned_cols=217 Identities=24% Similarity=0.341 Sum_probs=183.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC--CCCcccEEEECCEeC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR--LGRINGRITYNGKPF 115 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~--~~~~~G~I~~~G~~~ 115 (508)
+++++|++++++ ++++|+|+|+++++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++
T Consensus 3 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~ 69 (250)
T 2d2e_A 3 QLEIRDLWASID-------------GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENI 69 (250)
T ss_dssp EEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEC
T ss_pred eEEEEeEEEEEC-------------CEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEEC
Confidence 589999999874 35799999999999999999999999999999999998 688999999999987
Q ss_pred Ch----h-ccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-CcccccccCCCCCCc-c
Q 010509 116 SN----Q-MTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL-SECKNSLIGGPLTRG-V 188 (508)
Q Consensus 116 ~~----~-~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~vg~~~~~~-L 188 (508)
.. . .++.++||+|++.+++.+||+||+.+............++..++++++++.+|| .+..++.++ + |
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----~~L 144 (250)
T 2d2e_A 70 LELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN-----EGF 144 (250)
T ss_dssp TTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT-----CC-
T ss_pred CCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc-----cCC
Confidence 53 1 234589999999999999999999886532111112334455778999999999 577887765 6 9
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhh-ccEEEEEeCCeEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYM-FHKVLLLSEGYPL 267 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~-~D~v~lL~~G~iv 267 (508)
||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ .+..+ +|++++|++|+++
T Consensus 145 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~-~~~~~~~d~v~~l~~G~i~ 223 (250)
T 2d2e_A 145 SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQR-ILNYIQPDKVHVMMDGRVV 223 (250)
T ss_dssp ---HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSG-GGGTSCCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhcCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999777999999999987 46666 5999999999999
Q ss_pred EEcChh
Q 010509 268 YSGEAS 273 (508)
Q Consensus 268 ~~G~~~ 273 (508)
+.|+++
T Consensus 224 ~~g~~~ 229 (250)
T 2d2e_A 224 ATGGPE 229 (250)
T ss_dssp EEESHH
T ss_pred EEeCHH
Confidence 999987
No 22
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=1.1e-49 Score=396.94 Aligned_cols=222 Identities=24% Similarity=0.391 Sum_probs=191.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++|+... ...+++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 2 ~l~~~~l~~~y~~~~--------~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~ 73 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGT--------PLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKG 73 (266)
T ss_dssp CEEEEEEEEEESTTS--------TTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCH
T ss_pred EEEEEEEEEEecCCC--------ccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECch
Confidence 589999999874100 001569999999999999999999999999999999999999999999999998864
Q ss_pred -hccccEEEEecCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC--cccccccCCCCCCccCHHHH
Q 010509 118 -QMTRNTGFVTQED-VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS--ECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 -~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~vg~~~~~~LSGGer 193 (508)
..++.+|||+|++ ..++.+||+||+.++..... +.++.+++++++++.+||. +..++.++ +||||||
T Consensus 74 ~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~-----~LSgGq~ 144 (266)
T 2yz2_A 74 YEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY----PDRDPVPLVKKAMEFVGLDFDSFKDRVPF-----FLSGGEK 144 (266)
T ss_dssp HHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTC----TTSCSHHHHHHHHHHTTCCHHHHTTCCGG-----GSCHHHH
T ss_pred HHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcC----CHHHHHHHHHHHHHHcCcCCcccccCChh-----hCCHHHH
Confidence 3567899999995 56677999999998643211 1122345688999999999 88877664 9999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 194 KRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 194 qRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
|||+||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++|||++ .+..+||++++|++|+++..|+++
T Consensus 145 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~-~~~~~~d~v~~l~~G~i~~~g~~~ 223 (266)
T 2yz2_A 145 RRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIE-TVINHVDRVVVLEKGKKVFDGTRM 223 (266)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCT-TTGGGCSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH-HHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999999877999999999987 466789999999999999999988
Q ss_pred hHHH
Q 010509 274 GAMN 277 (508)
Q Consensus 274 ~~~~ 277 (508)
++.+
T Consensus 224 ~~~~ 227 (266)
T 2yz2_A 224 EFLE 227 (266)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8754
No 23
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=5.4e-50 Score=401.72 Aligned_cols=221 Identities=27% Similarity=0.388 Sum_probs=188.5
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
.+|+++||+++|+ ++++|+||||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.
T Consensus 20 ~~l~~~~l~~~y~-------------~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~ 86 (279)
T 2ihy_A 20 MLIQLDQIGRMKQ-------------GKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPG 86 (279)
T ss_dssp EEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC
T ss_pred ceEEEEeEEEEEC-------------CEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcc
Confidence 4699999999875 357999999999999999999999999999999999999999999999999875
Q ss_pred --h----hccccEEEEecCCCC--CCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCc
Q 010509 117 --N----QMTRNTGFVTQEDVL--SPYLTVTETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRG 187 (508)
Q Consensus 117 --~----~~~~~i~yv~Q~~~l--~~~lTv~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~ 187 (508)
. ..++.++||+|++.+ .+.+||+||+.++...... .....++.+++++++++.+||.+..++.++ +
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----~ 161 (279)
T 2ihy_A 87 KVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIG-----Y 161 (279)
T ss_dssp ---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGG-----G
T ss_pred cccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChh-----h
Confidence 2 346789999998754 3457999999875321100 011123445678999999999988887765 8
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEE--EEEecCcchHHHhhccEEEEEeCCe
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTI--VMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~ti--i~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|| |++|||++ .+..+||++++|++|+
T Consensus 162 LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~-~~~~~~d~v~~l~~G~ 240 (279)
T 2ihy_A 162 LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIE-EITANFSKILLLKDGQ 240 (279)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGG-GCCTTCCEEEEEETTE
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHH-HHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999997669999 99999986 4678899999999999
Q ss_pred EEEEcChhhHH
Q 010509 266 PLYSGEASGAM 276 (508)
Q Consensus 266 iv~~G~~~~~~ 276 (508)
+++.|+++++.
T Consensus 241 i~~~g~~~~~~ 251 (279)
T 2ihy_A 241 SIQQGAVEDIL 251 (279)
T ss_dssp EEEEEEHHHHC
T ss_pred EEEECCHHHHh
Confidence 99999987753
No 24
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=9.4e-49 Score=390.46 Aligned_cols=229 Identities=27% Similarity=0.385 Sum_probs=192.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--CCcccEEEECCEeC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRINGRITYNGKPF 115 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--~~~~G~I~~~G~~~ 115 (508)
+|+++||+++++ ++++|+|||+++++||+++|+||||||||||+|+|+|+. +|++|+|.++|+++
T Consensus 20 ~l~~~~l~~~y~-------------~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i 86 (267)
T 2zu0_C 20 MLSIKDLHVSVE-------------DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDL 86 (267)
T ss_dssp CEEEEEEEEEET-------------TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEG
T ss_pred eEEEEeEEEEEC-------------CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEEC
Confidence 699999999874 357999999999999999999999999999999999984 68899999999987
Q ss_pred Ch----hc-cccEEEEecCCCCCCCCCHHHHHHHHHH-hc---CCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCC
Q 010509 116 SN----QM-TRNTGFVTQEDVLSPYLTVTETMVFTAL-LQ---LPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLT 185 (508)
Q Consensus 116 ~~----~~-~~~i~yv~Q~~~l~~~lTv~E~l~~~~~-l~---~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~ 185 (508)
.. .. ++.++||+|++.+++.+||.|++.+... .+ .....+.++.+++++++++.+||. +..++.++
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 162 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVN---- 162 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTT----
T ss_pred CcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc----
Confidence 43 11 3459999999999999999999987542 11 111234455567889999999996 56666653
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhh-ccEEEEEeCC
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYM-FHKVLLLSEG 264 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~-~D~v~lL~~G 264 (508)
.+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|++++++|+|||++|||++ .+..+ ||++++|++|
T Consensus 163 ~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~~d~v~~l~~G 241 (267)
T 2zu0_C 163 VGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR-ILDYIKPDYVHVLYQG 241 (267)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG-GGGTSCCSEEEEEETT
T ss_pred cCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH-HHHhhcCCEEEEEECC
Confidence 259999999999999999999999999999999999999999999999777999999999986 45565 8999999999
Q ss_pred eEEEEcChhhHHHHHHhcCCC
Q 010509 265 YPLYSGEASGAMNYFASIGYC 285 (508)
Q Consensus 265 ~iv~~G~~~~~~~~f~~~g~~ 285 (508)
++++.|+++++.. ....||.
T Consensus 242 ~i~~~g~~~~~~~-~~~~~~~ 261 (267)
T 2zu0_C 242 RIVKSGDFTLVKQ-LEEQGYG 261 (267)
T ss_dssp EEEEEECTTHHHH-HHTTTCT
T ss_pred EEEEEcCHHHHhh-hhhcchh
Confidence 9999999987653 4445543
No 25
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=4.5e-48 Score=382.63 Aligned_cols=211 Identities=28% Similarity=0.425 Sum_probs=184.1
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+|+++|++++++. ++++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.
T Consensus 4 ~l~i~~l~~~y~~------------~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------- 63 (253)
T 2nq2_C 4 ALSVENLGFYYQA------------ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------- 63 (253)
T ss_dssp EEEEEEEEEEETT------------TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE--------
T ss_pred eEEEeeEEEEeCC------------CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE--------
Confidence 5899999998740 35799999999999999999999999999999999999999999998
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv 196 (508)
.++.++||+|++.+++.+||+||+.++...... ......+.+++++++++.+||.+..++.++ +|||||||||
T Consensus 64 -~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~qrv 137 (253)
T 2nq2_C 64 -VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFT-----SLSGGQRQLI 137 (253)
T ss_dssp -ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGG-----GSCHHHHHHH
T ss_pred -EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChh-----hCCHHHHHHH
Confidence 246799999999999999999999986532111 001123445678999999999988887764 8999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
+|||||+.+|++|+|||||+|||+.++..+++.|++++++ |+|||++|||++ .+.++||++++|++|+ ++.|+++++
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~-~~~~~~d~v~~l~~G~-~~~g~~~~~ 215 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPN-QVVAIANKTLLLNKQN-FKFGETRNI 215 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHH-HHHHHCSEEEEEETTE-EEEEEHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH-HHHHhCCEEEEEeCCe-EecCCHHHH
Confidence 9999999999999999999999999999999999999876 999999999986 5678999999999999 999998776
Q ss_pred H
Q 010509 276 M 276 (508)
Q Consensus 276 ~ 276 (508)
.
T Consensus 216 ~ 216 (253)
T 2nq2_C 216 L 216 (253)
T ss_dssp C
T ss_pred h
Confidence 3
No 26
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=5.7e-49 Score=392.85 Aligned_cols=218 Identities=25% Similarity=0.410 Sum_probs=183.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.|+++||+++|+.. +.+.+|+||||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 16 ~l~~~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~ 85 (271)
T 2ixe_A 16 LVKFQDVSFAYPNH----------PNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQ 85 (271)
T ss_dssp CEEEEEEEECCTTC----------TTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG
T ss_pred eEEEEEEEEEeCCC----------CCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence 69999999986410 12579999999999999999999999999999999999999999999999998743
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCC-HH----HHHHHHHHHHHHc--CCCcccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFT-EK----EKIKCAEAVMTEL--GLSECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~-~~----~~~~~v~~~l~~l--gL~~~~~~~vg~~~~~ 186 (508)
..++.++||+|++.+++ .||+||+.++.... . . ++ .....++++++.+ |+.+..++.+ .
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~---~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~-----~ 155 (271)
T 2ixe_A 86 YDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRT---P-TMEEITAVAMESGAHDFISGFPQGYDTEVGETG-----N 155 (271)
T ss_dssp BCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSC---C-CHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGG-----T
T ss_pred CCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccC---C-hHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCc-----C
Confidence 34567999999999887 59999998853211 1 1 11 1122356778888 7777666665 4
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
+|||||||||+|||||+.+|++|||||||+|||+.++..+++.|+++++ +|+|||++|||++ .+. .||++++|++|+
T Consensus 156 ~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~-~~~-~~d~v~~l~~G~ 233 (271)
T 2ixe_A 156 QLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLS-LAE-RAHHILFLKEGS 233 (271)
T ss_dssp TSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHH-HHT-TCSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHH-HHH-hCCEEEEEECCE
Confidence 8999999999999999999999999999999999999999999999965 5999999999986 354 599999999999
Q ss_pred EEEEcChhhHHH
Q 010509 266 PLYSGEASGAMN 277 (508)
Q Consensus 266 iv~~G~~~~~~~ 277 (508)
++..|+++++.+
T Consensus 234 i~~~g~~~~l~~ 245 (271)
T 2ixe_A 234 VCEQGTHLQLME 245 (271)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999987753
No 27
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=1.8e-48 Score=384.24 Aligned_cols=216 Identities=25% Similarity=0.436 Sum_probs=183.3
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
-.++++||+++++. +++.+|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++.
T Consensus 6 ~~~~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~ 74 (247)
T 2ff7_A 6 HDITFRNIRFRYKP-----------DSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLA 74 (247)
T ss_dssp EEEEEEEEEEESST-----------TSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred CceeEEEEEEEeCC-----------CCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhh
Confidence 36899999998730 1357999999999999999999999999999999999999999999999999975
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC------CCCCC
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG------GPLTR 186 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~ 186 (508)
. ..++.++||+|++.+++ .||+||+.++.. ..+ .++++++++.+++.+..++... +..+.
T Consensus 75 ~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~ 144 (247)
T 2ff7_A 75 LADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGEQGA 144 (247)
T ss_dssp TSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTT
T ss_pred hCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhCCCC
Confidence 3 34567999999999887 599999987521 112 2346678888888766554320 13456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ +|+|||++||+++. + ..||++++|++|++
T Consensus 145 ~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~g~tviivtH~~~~-~-~~~d~v~~l~~G~i 221 (247)
T 2ff7_A 145 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC-KGRTVIIIAHRLST-V-KNADRIIVMEKGKI 221 (247)
T ss_dssp CCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH-TTSEEEEECSSGGG-G-TTSSEEEEEETTEE
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc-CCCEEEEEeCCHHH-H-HhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999995 59999999999874 4 45999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
++.|+++++.
T Consensus 222 ~~~g~~~~l~ 231 (247)
T 2ff7_A 222 VEQGKHKELL 231 (247)
T ss_dssp EEEECHHHHH
T ss_pred EEECCHHHHH
Confidence 9999988764
No 28
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=2.4e-48 Score=383.65 Aligned_cols=207 Identities=27% Similarity=0.425 Sum_probs=184.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++ ++|+|+|+++++||+++|+||||||||||||+|+|+++|+ |+|.++|+++..
T Consensus 4 ~l~~~~l~~~-----------------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~ 65 (249)
T 2qi9_C 4 VMQLQDVAES-----------------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEA 65 (249)
T ss_dssp EEEEEEEEET-----------------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGG
T ss_pred EEEEEceEEE-----------------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCc
Confidence 5889999863 4799999999999999999999999999999999999999 999999998742
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER 193 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer 193 (508)
..++.++||+|++.+++.+||+||+.++.. +. .+ +++++++++.+||.+..++.++ +||||||
T Consensus 66 ~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---~~-~~----~~~~~~~l~~~~l~~~~~~~~~-----~LSgGq~ 132 (249)
T 2qi9_C 66 WSATKLALHRAYLSQQQTPPFATPVWHYLTLHQH---DK-TR----TELLNDVAGALALDDKLGRSTN-----QLSGGEW 132 (249)
T ss_dssp SCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTCS---ST-TC----HHHHHHHHHHTTCGGGTTSBGG-----GCCHHHH
T ss_pred CCHHHHhceEEEECCCCccCCCCcHHHHHHHhhc---cC-Cc----HHHHHHHHHHcCChhHhcCChh-----hCCHHHH
Confidence 345679999999999999999999987521 11 12 4568899999999988887664 8999999
Q ss_pred HHHHHHHHHhhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 194 KRVSIGQEILINPS-------LLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 194 qRv~Ia~aL~~~P~-------illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
|||+||+||+.+|+ +|+|||||+|||+.++..+++.|++++++|+|||++|||++ .+..++|++++|++|++
T Consensus 133 qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~-~~~~~~d~v~~l~~G~i 211 (249)
T 2qi9_C 133 QRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLN-HTLRHAHRAWLLKGGKM 211 (249)
T ss_dssp HHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEETTEE
T ss_pred HHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEECCEE
Confidence 99999999999999 99999999999999999999999999877999999999986 56789999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
++.|+++++.
T Consensus 212 ~~~g~~~~~~ 221 (249)
T 2qi9_C 212 LASGRREEVL 221 (249)
T ss_dssp EEEEEHHHHS
T ss_pred EEeCCHHHHh
Confidence 9999987763
No 29
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.2e-48 Score=393.15 Aligned_cols=215 Identities=27% Similarity=0.454 Sum_probs=183.4
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++||+++|+. .+.+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 52 ~~i~~~~vs~~y~~------------~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~ 119 (306)
T 3nh6_A 52 GRIEFENVHFSYAD------------GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDIS 119 (306)
T ss_dssp CCEEEEEEEEESST------------TCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETT
T ss_pred CeEEEEEEEEEcCC------------CCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcc
Confidence 36999999999741 357999999999999999999999999999999999999999999999999985
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCCC
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-------KNSLIGGPLT 185 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~ 185 (508)
. .+++.+|||+|++.+++ .||+||+.++... .+. ++++++++..++.+. .++.++ +..
T Consensus 120 ~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~-----~~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~-~~g 188 (306)
T 3nh6_A 120 QVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVT-----AGN----DEVEAAAQAAGIHDAIMAFPEGYRTQVG-ERG 188 (306)
T ss_dssp SBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTT-----CCH----HHHHHHHHHHTCHHHHHHSTTGGGCEES-TTS
T ss_pred cCCHHHHhcceEEEecCCccCc-ccHHHHHHhhccc-----CCH----HHHHHHHHHhCcHHHHHhccchhhhHhc-CCc
Confidence 4 45778999999999986 5999999876321 122 234555666665443 345555 455
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.+|||||||||+|||||+.+|+|||||||||+||+.++..+++.|+++.+ ++|+|++||+++. +.. ||+|++|++|+
T Consensus 189 ~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~-~~Tvi~itH~l~~-~~~-aD~i~vl~~G~ 265 (306)
T 3nh6_A 189 LKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA-NRTTIVVAHRLST-VVN-ADQILVIKDGC 265 (306)
T ss_dssp BCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT-TSEEEEECCSHHH-HHT-CSEEEEEETTE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC-CCEEEEEEcChHH-HHc-CCEEEEEECCE
Confidence 68999999999999999999999999999999999999999999999865 6899999999874 544 99999999999
Q ss_pred EEEEcChhhHHH
Q 010509 266 PLYSGEASGAMN 277 (508)
Q Consensus 266 iv~~G~~~~~~~ 277 (508)
++..|+++++.+
T Consensus 266 iv~~G~~~el~~ 277 (306)
T 3nh6_A 266 IVERGRHEALLS 277 (306)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999998764
No 30
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=2.5e-48 Score=382.15 Aligned_cols=215 Identities=27% Similarity=0.407 Sum_probs=184.0
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++++ +++++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++..
T Consensus 2 l~~~~l~~~y~------------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~ 69 (243)
T 1mv5_A 2 LSARHVDFAYD------------DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNI 69 (243)
T ss_dssp EEEEEEEECSS------------SSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTT
T ss_pred EEEEEEEEEeC------------CCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhC
Confidence 78999998762 13579999999999999999999999999999999999999999999999998743
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccC------CCCCCcc
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIG------GPLTRGV 188 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg------~~~~~~L 188 (508)
..++.++||+|++.+++ .||+||+.++.. + ..+ .++++++++.+++.+..++... +..+.+|
T Consensus 70 ~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~---~-~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~L 140 (243)
T 1mv5_A 70 SLENWRSQIGFVSQDSAIMA-GTIRENLTYGLE---G-DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKI 140 (243)
T ss_dssp SCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTT---S-CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCC
T ss_pred CHHHHHhhEEEEcCCCcccc-ccHHHHHhhhcc---C-CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcCcC
Confidence 34678999999999887 599999987521 1 112 2346788999999877655421 2345799
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
||||||||+|||||+.+|++|+|||||+|||+.++..+++.|++++ +|+|||++||+++ .+ ..||++++|++|+++.
T Consensus 141 SgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~-~~~tvi~vtH~~~-~~-~~~d~v~~l~~G~i~~ 217 (243)
T 1mv5_A 141 SGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM-KGRTTLVIAHRLS-TI-VDADKIYFIEKGQITG 217 (243)
T ss_dssp CHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH-TTSEEEEECCSHH-HH-HHCSEEEEEETTEECC
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc-CCCEEEEEeCChH-HH-HhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999997 6999999999986 44 4599999999999999
Q ss_pred EcChhhHHH
Q 010509 269 SGEASGAMN 277 (508)
Q Consensus 269 ~G~~~~~~~ 277 (508)
.|+++++..
T Consensus 218 ~g~~~~~~~ 226 (243)
T 1mv5_A 218 SGKHNELVA 226 (243)
T ss_dssp CSCHHHHHH
T ss_pred eCCHHHHHh
Confidence 999887653
No 31
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=4.6e-48 Score=373.29 Aligned_cols=203 Identities=19% Similarity=0.335 Sum_probs=175.7
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
...|+++|++++++ + ++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|+++
T Consensus 8 ~~~l~~~~ls~~y~-------------~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~ 73 (214)
T 1sgw_A 8 GSKLEIRDLSVGYD-------------K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPI 73 (214)
T ss_dssp -CEEEEEEEEEESS-------------S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEG
T ss_pred CceEEEEEEEEEeC-------------C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEh
Confidence 45799999999864 4 799999999999999999999999999999999999999999999999987
Q ss_pred ChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
. ..++.++||+|++.+++.+||+||+.++...+.. . .+ +++++++++.+||.+. ++.+ .+||||||||
T Consensus 74 ~-~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~---~~-~~~~~~~l~~~gl~~~-~~~~-----~~LSgGqkqr 141 (214)
T 1sgw_A 74 T-KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-K---VN-KNEIMDALESVEVLDL-KKKL-----GELSQGTIRR 141 (214)
T ss_dssp G-GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-C---CC-HHHHHHHHHHTTCCCT-TSBG-----GGSCHHHHHH
T ss_pred h-hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-c---hH-HHHHHHHHHHcCCCcC-CCCh-----hhCCHHHHHH
Confidence 5 4567899999999999999999999987654211 1 11 3567889999999877 6655 4999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
|+||+||+.+|++|+|||||+|||+.++..+++.|++++++|+|||++||+++ .+..++|+++++ +|+|
T Consensus 142 v~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~-~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 142 VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-TTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEe-CCcc
Confidence 99999999999999999999999999999999999999866899999999997 467788887654 4443
No 32
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=3.9e-47 Score=377.85 Aligned_cols=211 Identities=22% Similarity=0.265 Sum_probs=183.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++... ..+++|+|+|++++ ||+++|+||||||||||||+|+|++ |++|+|.++|+++..
T Consensus 1 ml~~~~l~~~y~~~~---------~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~ 69 (263)
T 2pjz_A 1 MIQLKNVGITLSGKG---------YERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRK 69 (263)
T ss_dssp CEEEEEEEEEEEEET---------TEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGG
T ss_pred CEEEEEEEEEeCCCC---------ccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcc
Confidence 378999999885210 01579999999999 9999999999999999999999999 999999999998743
Q ss_pred -hccccEE-EEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCHHHHH
Q 010509 118 -QMTRNTG-FVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 118 -~~~~~i~-yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerq 194 (508)
..++.++ ||+|++.+ .+||+||+.+..... .. .+++++++++.+||. +..++.++ +|||||||
T Consensus 70 ~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~---~~----~~~~~~~~l~~~gl~~~~~~~~~~-----~LSgGqkq 135 (263)
T 2pjz_A 70 IRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELK---GL----DRDLFLEMLKALKLGEEILRRKLY-----KLSAGQSV 135 (263)
T ss_dssp CSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHT---CC----CHHHHHHHHHHTTCCGGGGGSBGG-----GSCHHHHH
T ss_pred hHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhc---ch----HHHHHHHHHHHcCCChhHhcCChh-----hCCHHHHH
Confidence 1256799 99999887 789999999876442 11 134678999999998 88887764 99999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhcc-EEEEEeCCeEEEEcChh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFH-KVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D-~v~lL~~G~iv~~G~~~ 273 (508)
||+||+||+.+|++|+|||||+|||+.++..+++.|+++++ |||++|||++ .+.++|| ++++|++|++++.|+++
T Consensus 136 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~---tviivtHd~~-~~~~~~d~~i~~l~~G~i~~~g~~~ 211 (263)
T 2pjz_A 136 LVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK---EGILVTHELD-MLNLYKEYKAYFLVGNRLQGPISVS 211 (263)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS---EEEEEESCGG-GGGGCTTSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC---cEEEEEcCHH-HHHHhcCceEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999854 9999999986 4678999 99999999999999998
Q ss_pred hHHH
Q 010509 274 GAMN 277 (508)
Q Consensus 274 ~~~~ 277 (508)
++.+
T Consensus 212 ~l~~ 215 (263)
T 2pjz_A 212 ELLE 215 (263)
T ss_dssp HHHT
T ss_pred HHHh
Confidence 8764
No 33
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=1.1e-46 Score=374.09 Aligned_cols=215 Identities=24% Similarity=0.399 Sum_probs=179.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++.. ..+++|+|+|+++++||+++|+||||||||||+|+|+|++++ +|+|.++|+++..
T Consensus 17 ~l~i~~l~~~y~~~----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~ 85 (260)
T 2ghi_A 17 NIEFSDVNFSYPKQ----------TNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNK 85 (260)
T ss_dssp CEEEEEEEECCTTC----------CSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGG
T ss_pred eEEEEEEEEEeCCC----------CcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhh
Confidence 59999999987410 024699999999999999999999999999999999999986 8999999998743
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-------KNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~ 186 (508)
..++.++||+|++.+++ .||+||+.++.. ...+ +++.++++.+++.+. .++.++ ..+.
T Consensus 86 ~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~-~~~~ 154 (260)
T 2ghi_A 86 YNRNSIRSIIGIVPQDTILFN-ETIKYNILYGKL-----DATD----EEVIKATKSAQLYDFIEALPKKWDTIVG-NKGM 154 (260)
T ss_dssp BCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTCT-----TCCH----HHHHHHHHHTTCHHHHHTSTTGGGCEES-SSSB
T ss_pred cCHHHHhccEEEEcCCCcccc-cCHHHHHhccCC-----CCCH----HHHHHHHHHhCCHHHHHhcccccccccc-CCcC
Confidence 34678999999999886 599999987421 1122 345566777776543 344443 3467
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+|||||||||+|||||+.+|++|+|||||+|||+.++..+++.|+++++ |+|||++||+++. + ..||++++|++|++
T Consensus 155 ~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~-~~tviivtH~~~~-~-~~~d~i~~l~~G~i 231 (260)
T 2ghi_A 155 KLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRK-NRTLIIIAHRLST-I-SSAESIILLNKGKI 231 (260)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTT-TSEEEEECSSGGG-S-TTCSEEEEEETTEE
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcC-CCEEEEEcCCHHH-H-HhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999965 8999999999874 4 45999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|+++++..
T Consensus 232 ~~~g~~~~l~~ 242 (260)
T 2ghi_A 232 VEKGTHKDLLK 242 (260)
T ss_dssp EEEECHHHHHH
T ss_pred EEECCHHHHHh
Confidence 99999988753
No 34
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.8e-46 Score=390.29 Aligned_cols=215 Identities=22% Similarity=0.288 Sum_probs=183.9
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++||+++|+. +++.+|+|||++|++||+++|+||||||||||||+|+|+++ ++|+|.++|+++.
T Consensus 18 ~~i~~~~l~~~y~~-----------~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~ 85 (390)
T 3gd7_A 18 GQMTVKDLTAKYTE-----------GGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWD 85 (390)
T ss_dssp CCEEEEEEEEESSS-----------SSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTT
T ss_pred CeEEEEEEEEEecC-----------CCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECC
Confidence 46999999999741 14679999999999999999999999999999999999988 8999999999885
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCC------CCCC
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGG------PLTR 186 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~------~~~~ 186 (508)
. ..++.+|||+|++.+++ +||+||+.+.. ... +++++++++.++|.+..++++.. ....
T Consensus 86 ~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~ 154 (390)
T 3gd7_A 86 SITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGC 154 (390)
T ss_dssp SSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTT
T ss_pred cCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhcccccccccccccc
Confidence 3 34678999999999998 69999996321 112 34578899999999887766541 1122
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+|||||||||+|||||+.+|++|||||||||||+.++.++++.|+++. .++|+|++|||++ . ...+||+++|++|++
T Consensus 155 ~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~-~~~tvi~vtHd~e-~-~~~aDri~vl~~G~i 231 (390)
T 3gd7_A 155 VLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF-ADCTVILCEARIE-A-MLECDQFLVIEENKV 231 (390)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT-TTSCEEEECSSSG-G-GTTCSEEEEEETTEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh-CCCEEEEEEcCHH-H-HHhCCEEEEEECCEE
Confidence 399999999999999999999999999999999999999999999864 4799999999975 3 356999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|+++++.+
T Consensus 232 ~~~g~~~el~~ 242 (390)
T 3gd7_A 232 RQYDSILELYH 242 (390)
T ss_dssp EEESSHHHHHH
T ss_pred EEECCHHHHHh
Confidence 99999998754
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=1.6e-45 Score=359.10 Aligned_cols=204 Identities=27% Similarity=0.414 Sum_probs=168.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++++. +++++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|
T Consensus 6 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g----- 69 (229)
T 2pze_A 6 EVVMENVTAFWEE-----------GGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----- 69 (229)
T ss_dssp EEEEEEEEECSST-----------TSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-----
T ss_pred eEEEEEEEEEeCC-----------CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-----
Confidence 6999999998641 135799999999999999999999999999999999999999999999998
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCCCCCccCH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK-------NSLIGGPLTRGVSG 190 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~~~LSG 190 (508)
.++|++|++.+++. ||+||+.++.. .... +.+++++.+++.+.. ++.++ ..+.+|||
T Consensus 70 ----~i~~v~q~~~~~~~-tv~enl~~~~~------~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSg 133 (229)
T 2pze_A 70 ----RISFCSQFSWIMPG-TIKENIIFGVS------YDEY----RYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSG 133 (229)
T ss_dssp ----CEEEECSSCCCCSB-CHHHHHHTTSC------CCHH----HHHHHHHHTTCHHHHTTSTTGGGSCBC-TTCTTSCH
T ss_pred ----EEEEEecCCcccCC-CHHHHhhccCC------cChH----HHHHHHHHhCcHHHHHhCccccccccc-CCCCcCCH
Confidence 39999999999885 99999987521 1111 233445555554332 22332 33569999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSI-LLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~-L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
||||||+|||||+.+|++++|||||+|||+.++..+++. ++++. +|+|||++||+++ .+. .||++++|++|+++..
T Consensus 134 Gqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~-~~~tvi~vtH~~~-~~~-~~d~v~~l~~G~i~~~ 210 (229)
T 2pze_A 134 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HLK-KADKILILHEGSSYFY 210 (229)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HHH-HCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh-CCCEEEEEcCChH-HHH-hCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999997 45664 4899999999986 354 5999999999999999
Q ss_pred cChhhHH
Q 010509 270 GEASGAM 276 (508)
Q Consensus 270 G~~~~~~ 276 (508)
|+++++.
T Consensus 211 g~~~~~~ 217 (229)
T 2pze_A 211 GTFSELQ 217 (229)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 9988764
No 36
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=2.7e-45 Score=359.31 Aligned_cols=211 Identities=22% Similarity=0.421 Sum_probs=167.0
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
+++++|++++++. +++++|+|+|+++++||+++|+||||||||||||+|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~-----------~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g----- 66 (237)
T 2cbz_A 3 SITVRNATFTWAR-----------SDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG----- 66 (237)
T ss_dssp CEEEEEEEEESCT-----------TSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-----
T ss_pred eEEEEEEEEEeCC-----------CCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-----
Confidence 4899999998741 135799999999999999999999999999999999999999999999998
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCccCHHHHHHH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-KNSLIGGPLTRGVSGGERKRV 196 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv 196 (508)
.++||+|++.+ +.+||+||+.++... .....++.....++.+.+++.+. .++.++ ..+.+|||||||||
T Consensus 67 ----~i~~v~Q~~~~-~~~tv~enl~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~LSgGqkqRv 136 (237)
T 2cbz_A 67 ----SVAYVPQQAWI-QNDSLRENILFGCQL----EEPYYRSVIQACALLPDLEILPSGDRTEIG-EKGVNLSGGQKQRV 136 (237)
T ss_dssp ----CEEEECSSCCC-CSEEHHHHHHTTSCC----CTTHHHHHHHHTTCHHHHTTSTTGGGSEES-TTSBCCCHHHHHHH
T ss_pred ----EEEEEcCCCcC-CCcCHHHHhhCcccc----CHHHHHHHHHHHhhHHHHHhcccccccccc-CCCCCCCHHHHHHH
Confidence 39999999865 578999999875321 11111111111112233333221 122232 34569999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChh
Q 010509 197 SIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL---KLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEAS 273 (508)
Q Consensus 197 ~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~---~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~ 273 (508)
+|||||+.+|++|+|||||+|||+.++..+++.|+ +++ +|+|||++||+++. + ..||++++|++|+++..|+++
T Consensus 137 ~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~-~~~tviivtH~~~~-~-~~~d~v~~l~~G~i~~~g~~~ 213 (237)
T 2cbz_A 137 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML-KNKTRILVTHSMSY-L-PQVDVIIVMSGGKISEMGSYQ 213 (237)
T ss_dssp HHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT-TTSEEEEECSCSTT-G-GGSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc-CCCEEEEEecChHH-H-HhCCEEEEEeCCEEEEeCCHH
Confidence 99999999999999999999999999999999995 443 48999999999874 4 469999999999999999998
Q ss_pred hHHH
Q 010509 274 GAMN 277 (508)
Q Consensus 274 ~~~~ 277 (508)
++.+
T Consensus 214 ~~~~ 217 (237)
T 2cbz_A 214 ELLA 217 (237)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 7643
No 37
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.3e-44 Score=398.43 Aligned_cols=218 Identities=26% Similarity=0.413 Sum_probs=184.5
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN- 117 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~- 117 (508)
++++|++++|+.. .++++|+|+|+++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.+
T Consensus 342 i~~~~v~~~y~~~----------~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~i~~~ 411 (595)
T 2yl4_A 342 LEFKNVHFAYPAR----------PEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDIRQL 411 (595)
T ss_dssp EEEEEEEEECSSC----------TTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEETTEETTTB
T ss_pred EEEEEEEEEeCCC----------CCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCEEhhhC
Confidence 9999999997521 12579999999999999999999999999999999999999999999999999853
Q ss_pred ---hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCCc
Q 010509 118 ---QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-------KNSLIGGPLTRG 187 (508)
Q Consensus 118 ---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~~ 187 (508)
..++.++||+|++.+++ .||+||+.++.... ...+ +++++++++.+++.+. .|+.+| +.+.+
T Consensus 412 ~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~--~~~~----~~~~~~~~~~~~l~~~~~~l~~g~~~~~~-~~~~~ 483 (595)
T 2yl4_A 412 NPVWLRSKIGTVSQEPILFS-CSIAENIAYGADDP--SSVT----AEEIQRVAEVANAVAFIRNFPQGFNTVVG-EKGVL 483 (595)
T ss_dssp CHHHHHHSEEEECSSCCCCS-SBHHHHHHTTSSST--TTSC----HHHHHHHHHHTTCHHHHHTSSSGGGCBCS-SSSCC
T ss_pred CHHHHHhceEEEccCCcccC-CCHHHHHhhcCCCc--cccC----HHHHHHHHHHcCCHHHHHhCccccccccc-CCCCc
Confidence 35678999999999987 49999998863210 0122 2456778888887543 466665 34578
Q ss_pred cCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 188 VSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 188 LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
||||||||++|||||+.+|++|+||||||+||+.++..+.+.|+++.+ |+|+|++||+++. + +.|||+++|++|+++
T Consensus 484 LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i~ 560 (595)
T 2yl4_A 484 LSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMD-GRTVLVIAHRLST-I-KNANMVAVLDQGKIT 560 (595)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHT-TSEEEEECCCHHH-H-HHSSEEEEEETTEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhc-CCEEEEEecCHHH-H-HcCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999976 8999999999864 4 459999999999999
Q ss_pred EEcChhhHHH
Q 010509 268 YSGEASGAMN 277 (508)
Q Consensus 268 ~~G~~~~~~~ 277 (508)
..|+++++.+
T Consensus 561 ~~g~~~~l~~ 570 (595)
T 2yl4_A 561 EYGKHEELLS 570 (595)
T ss_dssp EEECSCC---
T ss_pred EECCHHHHHh
Confidence 9999988753
No 38
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.4e-44 Score=397.15 Aligned_cols=216 Identities=23% Similarity=0.373 Sum_probs=185.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++|+. +++++|+|+|+++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.+
T Consensus 341 ~i~~~~v~~~y~~-----------~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~ 409 (582)
T 3b60_A 341 DLEFRNVTFTYPG-----------REVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE 409 (582)
T ss_dssp CEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTT
T ss_pred cEEEEEEEEEcCC-----------CCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccc
Confidence 5999999998641 02569999999999999999999999999999999999999999999999999853
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-------KNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~ 186 (508)
..++.++||+|++.+++. ||+||+.++.. + ..++ ++++++++.+++.+. .|+.+| +...
T Consensus 410 ~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~~----~~~~~~l~~~~l~~~~~~~p~g~~~~~~-~~~~ 479 (582)
T 3b60_A 410 YTLASLRNQVALVSQNVHLFND-TVANNIAYART---E-EYSR----EQIEEAARMAYAMDFINKMDNGLDTIIG-ENGV 479 (582)
T ss_dssp BCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT---S-CCCH----HHHHHHHHTTTCHHHHHHSTTGGGSBCC-TTSC
T ss_pred cCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC---C-CCCH----HHHHHHHHHcCCHHHHHhcccccccccc-CCCC
Confidence 456789999999999985 99999987531 1 1222 446778888887654 355565 4467
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++|||||+.+|++++||||||+||+.++.++.+.|+++.+ |+|+|++||+++. + +.|||+++|++|++
T Consensus 480 ~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~i 556 (582)
T 3b60_A 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK-NRTSLVIAHRLST-I-EQADEIVVVEDGII 556 (582)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT-TSEEEEECSCGGG-T-TTCSEEEEEETTEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC-CCEEEEEeccHHH-H-HhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999999975 8999999999974 4 46999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|+++++.+
T Consensus 557 ~~~g~~~~l~~ 567 (582)
T 3b60_A 557 VERGTHSELLA 567 (582)
T ss_dssp EEEECHHHHHH
T ss_pred EEecCHHHHHH
Confidence 99999988754
No 39
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.5e-44 Score=397.06 Aligned_cols=217 Identities=24% Similarity=0.386 Sum_probs=185.8
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++++|+. +++++|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~ 408 (582)
T 3b5x_A 340 GEVDVKDVTFTYQG-----------KEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVR 408 (582)
T ss_pred CeEEEEEEEEEcCC-----------CCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhh
Confidence 36999999999751 0256999999999999999999999999999999999999999999999999874
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-------ccccCCCCC
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK-------NSLIGGPLT 185 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~vg~~~~ 185 (508)
+ ..++.++||+|++.+++. ||+||+.++.. + ..+ +++++++++.+++.+.. |+.+| +..
T Consensus 409 ~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~-~~~ 478 (582)
T 3b5x_A 409 DYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIG-ENG 478 (582)
T ss_pred hCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhc-CCC
Confidence 3 457789999999999875 99999988531 1 122 24567788888886543 44554 345
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.+||||||||++|||||+.+|++|+||||||+||+.++..+.+.|+++.+ |+|+|+++|+++. + +.||++++|++|+
T Consensus 479 ~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~~~~-~-~~~d~i~~l~~G~ 555 (582)
T 3b5x_A 479 TSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQK-NKTVLVIAHRLST-I-EQADEILVVDEGE 555 (582)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcC-CCEEEEEecCHHH-H-HhCCEEEEEECCE
Confidence 78999999999999999999999999999999999999999999999865 8999999999863 4 4699999999999
Q ss_pred EEEEcChhhHHH
Q 010509 266 PLYSGEASGAMN 277 (508)
Q Consensus 266 iv~~G~~~~~~~ 277 (508)
++..|+++++.+
T Consensus 556 i~~~g~~~~l~~ 567 (582)
T 3b5x_A 556 IIERGRHADLLA 567 (582)
T ss_pred EEEECCHHHHHh
Confidence 999999988753
No 40
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=1.4e-44 Score=396.83 Aligned_cols=216 Identities=25% Similarity=0.399 Sum_probs=183.5
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++++++. +++++|+|+|+++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 338 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~ 406 (578)
T 4a82_A 338 GRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIK 406 (578)
T ss_dssp CCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGG
T ss_pred CeEEEEEEEEEcCC-----------CCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhh
Confidence 36999999998752 1357999999999999999999999999999999999999999999999999985
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-------ccccccCCCCC
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-------CKNSLIGGPLT 185 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~vg~~~~ 185 (508)
+ ..++.++||+|++.+++. ||+||+.++. + ..++ +++.+.++..++.+ -.|+.+| +..
T Consensus 407 ~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~----~-~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~-~~g 475 (578)
T 4a82_A 407 DFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR----P-TATD----EEVVEAAKMANAHDFIMNLPQGYDTEVG-ERG 475 (578)
T ss_dssp GSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC----S-SCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCC-GGG
T ss_pred hCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCC----C-CCCH----HHHHHHHHHhCcHHHHHhCcchhhhhhc-cCC
Confidence 4 457789999999999986 9999998752 1 1222 23445556555543 3456665 445
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.+||||||||++|||||+.+|++++|||||||||+.++..+.+.|+++. +|+|+|++||+++. + ..|||+++|++|+
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~ 552 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST-I-THADKIVVIENGH 552 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG-T-TTCSEEEEEETTE
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCE
Confidence 6899999999999999999999999999999999999999999999985 47999999999974 4 4599999999999
Q ss_pred EEEEcChhhHHH
Q 010509 266 PLYSGEASGAMN 277 (508)
Q Consensus 266 iv~~G~~~~~~~ 277 (508)
+++.|+++++.+
T Consensus 553 i~~~g~~~el~~ 564 (578)
T 4a82_A 553 IVETGTHRELIA 564 (578)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999998764
No 41
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2e-44 Score=396.23 Aligned_cols=216 Identities=25% Similarity=0.382 Sum_probs=182.3
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++++|++++|+. +++++|+|+|+++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.
T Consensus 340 ~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~ 408 (587)
T 3qf4_A 340 GSVSFENVEFRYFE-----------NTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVR 408 (587)
T ss_dssp CCEEEEEEEECSSS-----------SSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGG
T ss_pred CcEEEEEEEEEcCC-----------CCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcc
Confidence 36999999998752 1357999999999999999999999999999999999999999999999999985
Q ss_pred h----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-------cccccccCCCCC
Q 010509 117 N----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-------ECKNSLIGGPLT 185 (508)
Q Consensus 117 ~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~vg~~~~ 185 (508)
+ ..+++++||+|++.+++. ||+||+.++.. ..++++ +.+.++..++. +-.|+.++ +.+
T Consensus 409 ~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~-----~~~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~-~~~ 477 (587)
T 3qf4_A 409 TVKLKDLRGHISAVPQETVLFSG-TIKENLKWGRE-----DATDDE----IVEAAKIAQIHDFIISLPEGYDSRVE-RGG 477 (587)
T ss_dssp GBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCS-----SCCHHH----HHHHHHHTTCHHHHHTSSSGGGCEEC-SSS
T ss_pred cCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCC-----CCCHHH----HHHHHHHhCcHHHHHhcccchhhHhc-CCC
Confidence 4 457789999999999975 99999987531 123322 33334444433 34566665 456
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.+||||||||++|||||+.+|++|+||||||+||+.++.++.+.|+++. +|+|+|++||+++. + ..|||+++|++|+
T Consensus 478 ~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-~-~~~d~i~vl~~G~ 554 (587)
T 3qf4_A 478 RNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT-KGCTTFIITQKIPT-A-LLADKILVLHEGK 554 (587)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS-TTCEEEEEESCHHH-H-TTSSEEEEEETTE
T ss_pred CCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC-CCCEEEEEecChHH-H-HhCCEEEEEECCE
Confidence 7899999999999999999999999999999999999999999999984 58999999999874 4 5799999999999
Q ss_pred EEEEcChhhHHH
Q 010509 266 PLYSGEASGAMN 277 (508)
Q Consensus 266 iv~~G~~~~~~~ 277 (508)
+++.|+++++.+
T Consensus 555 i~~~g~~~el~~ 566 (587)
T 3qf4_A 555 VAGFGTHKELLE 566 (587)
T ss_dssp EEEEECHHHHHH
T ss_pred EEEECCHHHHHh
Confidence 999999998764
No 42
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=4e-44 Score=394.69 Aligned_cols=214 Identities=24% Similarity=0.411 Sum_probs=180.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++|+ +++++|+|+|+++++||++||+||||||||||+|+|+|+++|++|+|.++|+++.+
T Consensus 354 ~i~~~~v~~~y~------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~ 421 (598)
T 3qf4_B 354 EIEFKNVWFSYD------------KKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRK 421 (598)
T ss_dssp CEEEEEEECCSS------------SSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGG
T ss_pred eEEEEEEEEECC------------CCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhh
Confidence 699999999864 13569999999999999999999999999999999999999999999999999854
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcc-------cccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSEC-------KNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~vg~~~~~ 186 (508)
..++.++||+|++.+++ .||+||+.++.. ..++ ++++++++..++.+. .++.+| +...
T Consensus 422 ~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~-~~g~ 490 (598)
T 3qf4_B 422 IKRSSLRSSIGIVLQDTILFS-TTVKENLKYGNP-----GATD----EEIKEAAKLTHSDHFIKHLPEGYETVLT-DNGE 490 (598)
T ss_dssp SCHHHHHHHEEEECTTCCCCS-SBHHHHHHSSST-----TCCT----THHHHHTTTTTCHHHHHTSTTGGGCBCH-HHHT
T ss_pred CCHHHHHhceEEEeCCCcccc-ccHHHHHhcCCC-----CCCH----HHHHHHHHHhCCHHHHHhccccccchhc-CCCC
Confidence 45778999999999987 599999987521 1122 223445555555433 344444 2345
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++|||||+.+|++|+||||||+||+.++.++.+.|+++. +|+|+|++||+++. + ..||++++|++|++
T Consensus 491 ~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-~-~~~d~i~~l~~G~i 567 (598)
T 3qf4_B 491 DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM-EGKTSIIIAHRLNT-I-KNADLIIVLRDGEI 567 (598)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH-TTSEEEEESCCTTH-H-HHCSEEEEECSSSE
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEE
Confidence 899999999999999999999999999999999999999999999986 58999999999984 5 44999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+..|+++++.+
T Consensus 568 ~~~g~~~~l~~ 578 (598)
T 3qf4_B 568 VEMGKHDELIQ 578 (598)
T ss_dssp EECSCHHHHHH
T ss_pred EEECCHHHHHh
Confidence 99999998764
No 43
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=8e-43 Score=351.38 Aligned_cols=199 Identities=27% Similarity=0.433 Sum_probs=155.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|+++. .+++|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|
T Consensus 40 ~l~~~~l~~~---------------~~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g----- 99 (290)
T 2bbs_A 40 SLSFSNFSLL---------------GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG----- 99 (290)
T ss_dssp -------------------------CCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-----
T ss_pred eEEEEEEEEc---------------CceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-----
Confidence 5889999874 24689999999999999999999999999999999999999999999998
Q ss_pred hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccc-------cccCCCCCCccCH
Q 010509 118 QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKN-------SLIGGPLTRGVSG 190 (508)
Q Consensus 118 ~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~vg~~~~~~LSG 190 (508)
.++||+|++.+++. ||+||+. +. . ... .++++.++.+++.+..+ +.++ ..+.+|||
T Consensus 100 ----~i~~v~Q~~~l~~~-tv~enl~-~~--~----~~~----~~~~~~~~~~~l~~~l~~~~~~~~~~~~-~~~~~LSg 162 (290)
T 2bbs_A 100 ----RISFCSQNSWIMPG-TIKENII-GV--S----YDE----YRYRSVIKACQLEEDISKFAEKDNIVLG-EGGITLSG 162 (290)
T ss_dssp ----CEEEECSSCCCCSS-BHHHHHH-TT--C----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBC-----CCCCH
T ss_pred ----EEEEEeCCCccCcc-cHHHHhh-Cc--c----cch----HHHHHHHHHhChHHHHHhccccccchhc-CccCcCCH
Confidence 38999999998885 9999997 32 1 111 12344555566644322 2222 23468999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEE
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSIL-LKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L-~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~ 269 (508)
|||||++|||||+.+|++|+|||||+|||+.++..+++.+ +++. +|+|||++||+++ .+ ..||++++|++|+++..
T Consensus 163 Gq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~-~~~tviivtHd~~-~~-~~~d~i~~l~~G~i~~~ 239 (290)
T 2bbs_A 163 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM-ANKTRILVTSKME-HL-KKADKILILHEGSSYFY 239 (290)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT-TTSEEEEECCCHH-HH-HHSSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh-CCCEEEEEecCHH-HH-HcCCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999974 5554 4899999999986 45 45999999999999999
Q ss_pred cChhhHH
Q 010509 270 GEASGAM 276 (508)
Q Consensus 270 G~~~~~~ 276 (508)
|+++++.
T Consensus 240 g~~~~l~ 246 (290)
T 2bbs_A 240 GTFSELQ 246 (290)
T ss_dssp ECHHHHH
T ss_pred CCHHHHh
Confidence 9998874
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4.4e-42 Score=407.35 Aligned_cols=218 Identities=27% Similarity=0.460 Sum_probs=188.6
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++|+.+ .+.++|+|+||+|+|||.+||+||||||||||+++|.|++.|++|+|.+||.++.+
T Consensus 1076 ~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~ 1145 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPER----------PEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKT 1145 (1321)
T ss_dssp CEEEEEEEECCTTS----------CSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTT
T ss_pred eEEEEEEEEeCCCC----------CCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhh
Confidence 69999999998621 24579999999999999999999999999999999999999999999999999864
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL-------SECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~ 186 (508)
.+|++++|||||+.+|+. |++||+.++.. |...+++ .+.++++..++ .+-.||.+| +...
T Consensus 1146 i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld---~~~~sd~----ei~~Al~~a~l~~~I~~Lp~GldT~vg-e~G~ 1216 (1321)
T 4f4c_A 1146 LNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLD---PSSVTMA----QVEEAARLANIHNFIAELPEGFETRVG-DRGT 1216 (1321)
T ss_dssp BCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSC---TTTSCHH----HHHHHHHHTTCHHHHHTSTTTTCSEET-TTSC
T ss_pred CCHHHHHhheEEECCCCEeeCc-cHHHHHhccCC---CCCCCHH----HHHHHHHHhCChHHHHcCcCCCCCEec-CCCc
Confidence 578999999999999986 99999987531 2233443 35556666655 445688887 4456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++|||||+++|+||+||||||+||+.+...|.+.|+++. +|+|+|+++|+++. + ..||||++|++|+|
T Consensus 1217 ~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT-i-~~aD~I~Vld~G~I 1293 (1321)
T 4f4c_A 1217 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT-V-MNADCIAVVSNGTI 1293 (1321)
T ss_dssp SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST-T-TTCSEEEEESSSSE
T ss_pred ccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc-CCCEEEEeccCHHH-H-HhCCEEEEEECCEE
Confidence 899999999999999999999999999999999999999999998865 48999999999984 4 56899999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
+++|+++++++
T Consensus 1294 vE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1294 IEKGTHTQLMS 1304 (1321)
T ss_dssp EEEECHHHHHH
T ss_pred EEECCHHHHHh
Confidence 99999999875
No 45
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.6e-41 Score=399.56 Aligned_cols=215 Identities=27% Similarity=0.433 Sum_probs=186.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++|+|+.. +++++|+|+|+++++||.+||+||||||||||+++|.|.++|++|+|.+||+++.+
T Consensus 415 ~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~ 484 (1321)
T 4f4c_A 415 DITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRD 484 (1321)
T ss_dssp CEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTT
T ss_pred cEEEEEeeeeCCCC----------CCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchh
Confidence 69999999998621 24689999999999999999999999999999999999999999999999999864
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC-------CcccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL-------SECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~vg~~~~~ 186 (508)
.+|+++|||+|++.+++. |++||+.|+.. ..+++ ++.++++..++ .+-.||.+|+ ...
T Consensus 485 ~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~-----~~~~~----~v~~a~~~a~l~~~i~~lp~G~~T~vGe-~G~ 553 (1321)
T 4f4c_A 485 INLEFLRKNVAVVSQEPALFNC-TIEENISLGKE-----GITRE----EMVAACKMANAEKFIKTLPNGYNTLVGD-RGT 553 (1321)
T ss_dssp SCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCT-----TCCHH----HHHHHHHHTTCHHHHHHSTTTTSSEESS-SSC
T ss_pred ccHHHHhhcccccCCcceeeCC-chhHHHhhhcc-----cchHH----HHHHHHHHccchhHHHcCCCCCccEecC-CCC
Confidence 467899999999999975 99999998631 23333 34455555443 4566888984 456
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.||||||||++||||++++|+|++||||||+||+.+...+.+.|+++.+ |+|+|+++|+++. .+.||+|++|++|+|
T Consensus 554 ~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~-~~T~iiiaHrls~--i~~aD~Iivl~~G~i 630 (1321)
T 4f4c_A 554 QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK-GRTTIIIAHRLST--IRNADLIISCKNGQV 630 (1321)
T ss_dssp CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT-TSEEEEECSCTTT--TTTCSEEEEEETTEE
T ss_pred CCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC-CCEEEEEcccHHH--HHhCCEEEEeeCCee
Confidence 8999999999999999999999999999999999999999999999864 8999999999973 467999999999999
Q ss_pred EEEcChhhHH
Q 010509 267 LYSGEASGAM 276 (508)
Q Consensus 267 v~~G~~~~~~ 276 (508)
++.|+.+++.
T Consensus 631 ve~Gth~eL~ 640 (1321)
T 4f4c_A 631 VEVGDHRALM 640 (1321)
T ss_dssp EEEECHHHHH
T ss_pred eccCCHHHHH
Confidence 9999998875
No 46
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.4e-40 Score=393.55 Aligned_cols=216 Identities=28% Similarity=0.457 Sum_probs=182.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++|+.. .++++|+|+|+++++||++||+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 387 ~i~~~~v~~~y~~~----------~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~ 456 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSR----------KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRT 456 (1284)
T ss_dssp CEEEEEEEECCSST----------TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGG
T ss_pred eEEEEEEEEEcCCC----------CCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHh
Confidence 69999999987521 13579999999999999999999999999999999999999999999999999853
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELG-------LSECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~ 186 (508)
..|+.+|||+|++.+++. ||+||+.++.. ..+.++. ++.++..+ +.+..||.+| +...
T Consensus 457 ~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~-----~~~~~~~----~~~~~~~~~~~~i~~l~~g~~t~~~-~~g~ 525 (1284)
T 3g5u_A 457 INVRYLREIIGVVSQEPVLFAT-TIAENIRYGRE-----DVTMDEI----EKAVKEANAYDFIMKLPHQFDTLVG-ERGA 525 (1284)
T ss_dssp SCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCS-----SCCHHHH----HHHHHHTTCHHHHHHSTTGGGCCCS-SSSC
T ss_pred CCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCC-----CCCHHHH----HHHHHHhCcHHHHHhcccccccccc-CCCC
Confidence 457789999999999986 99999998732 1233332 23333332 3345577776 4566
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++|||||+.+|+||+||||||+||+.+...+.+.++++. +|+|+|+++|+++. + ..+|+|++|++|++
T Consensus 526 ~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~-i-~~~d~i~vl~~G~i 602 (1284)
T 3g5u_A 526 QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR-EGRTTIVIAHRLST-V-RNADVIAGFDGGVI 602 (1284)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH-TTSEEEEECSCHHH-H-TTCSEEEECSSSCC
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc-CCCEEEEEecCHHH-H-HcCCEEEEEECCEE
Confidence 899999999999999999999999999999999999999999998875 48999999999874 5 45999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
++.|+.++..+
T Consensus 603 ~~~g~~~~l~~ 613 (1284)
T 3g5u_A 603 VEQGNHDELMR 613 (1284)
T ss_dssp CCEECHHHHHH
T ss_pred EEECCHHHHHh
Confidence 99999998754
No 47
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6e-40 Score=388.21 Aligned_cols=218 Identities=25% Similarity=0.434 Sum_probs=182.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN 117 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~ 117 (508)
.++++|++++|+.. .++++|+|+|+++++||++||+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 1030 ~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~ 1099 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQ 1099 (1284)
T ss_dssp CEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTS
T ss_pred cEEEEEEEEECCCC----------CCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEccc
Confidence 59999999987521 13469999999999999999999999999999999999999999999999999853
Q ss_pred ----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcC-------CCcccccccCCCCCC
Q 010509 118 ----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELG-------LSECKNSLIGGPLTR 186 (508)
Q Consensus 118 ----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~vg~~~~~ 186 (508)
..|+.++||||++.+++ .||+||+.++... ...+.++. .+.++..+ +.+..||.+| +...
T Consensus 1100 ~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~---~~~~~~~i----~~~~~~~~~~~~i~~l~~gldt~vg-e~G~ 1170 (1284)
T 3g5u_A 1100 LNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNS---RVVSYEEI----VRAAKEANIHQFIDSLPDKYNTRVG-DKGT 1170 (1284)
T ss_dssp SCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSS---CCCCHHHH----HHHHHHHTCHHHHSSTTTGGGCBCS-TTSC
T ss_pred CCHHHHHhceEEECCCCcccc-ccHHHHHhccCCC---CCCCHHHH----HHHHHHhCcHHHHHhCccccccccC-CCCC
Confidence 46788999999998886 6999999875321 12233332 23333333 3455677887 4567
Q ss_pred ccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 187 GVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 187 ~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
+||||||||++|||||+.+|+||+|||||||||+.+...+.+.|+++ .+|+|+|+++|+++. + ..||||++|++|++
T Consensus 1171 ~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~tvi~isH~l~~-i-~~~dri~vl~~G~i 1247 (1284)
T 3g5u_A 1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGRTCIVIAHRLST-I-QNADLIVVIQNGKV 1247 (1284)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSSCEEEECSCTTG-G-GSCSEEEEEETBEE
T ss_pred ccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHh-CCCCEEEEEecCHHH-H-HcCCEEEEEECCEE
Confidence 89999999999999999999999999999999999999999999885 458999999999985 5 45999999999999
Q ss_pred EEEcChhhHHH
Q 010509 267 LYSGEASGAMN 277 (508)
Q Consensus 267 v~~G~~~~~~~ 277 (508)
++.|+++++.+
T Consensus 1248 ~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1248 KEHGTHQQLLA 1258 (1284)
T ss_dssp EEEECHHHHHH
T ss_pred EEECCHHHHHh
Confidence 99999998764
No 48
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.5e-39 Score=357.55 Aligned_cols=206 Identities=20% Similarity=0.305 Sum_probs=179.1
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
...++++|+++.++ ...|+++|+++++||+++|+||||||||||||+|+|+++|++|+|.+
T Consensus 355 ~~~l~~~~l~~~~~--------------~~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~----- 415 (607)
T 3bk7_A 355 ETLVEYPRLVKDYG--------------SFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW----- 415 (607)
T ss_dssp CEEEEECCEEEECS--------------SCEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-----
T ss_pred ceEEEEeceEEEec--------------ceEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-----
Confidence 35799999988764 23689999999999999999999999999999999999999999976
Q ss_pred ChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
.+.++|++|+..+.+.+||.|++....... ....++++++++.+||.+..++.++ +||||||||
T Consensus 416 ----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QR 479 (607)
T 3bk7_A 416 ----DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQR 479 (607)
T ss_dssp ----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHH
T ss_pred ----eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCChh-----hCCHHHHHH
Confidence 246999999988878899999886531110 0123567889999999988887765 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeC--CeEEEEcCh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSE--GYPLYSGEA 272 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~--G~iv~~G~~ 272 (508)
|+||++|+.+|++|||||||+|||+.++..+++.|+++++ .|.|||++|||+. .+..+|||+++|++ |+++..|++
T Consensus 480 v~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p 558 (607)
T 3bk7_A 480 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPP 558 (607)
T ss_dssp HHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCC
T ss_pred HHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEcCCcceEEecCCH
Confidence 9999999999999999999999999999999999999974 6999999999986 57789999999986 888899999
Q ss_pred hhHHH
Q 010509 273 SGAMN 277 (508)
Q Consensus 273 ~~~~~ 277 (508)
+++..
T Consensus 559 ~~~~~ 563 (607)
T 3bk7_A 559 MGMRE 563 (607)
T ss_dssp EEHHH
T ss_pred HHHHh
Confidence 98765
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.6e-39 Score=353.35 Aligned_cols=207 Identities=22% Similarity=0.306 Sum_probs=178.6
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
...++++|+++.++ ...|+++|+++++||+++|+||||||||||+|+|+|+++|++|+|.+
T Consensus 285 ~~~l~~~~l~~~~~--------------~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~----- 345 (538)
T 1yqt_A 285 ETLVTYPRLVKDYG--------------SFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW----- 345 (538)
T ss_dssp CEEEEECCEEEEET--------------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-----
T ss_pred CeEEEEeeEEEEEC--------------CEEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-----
Confidence 35799999988764 23689999999999999999999999999999999999999999975
Q ss_pred ChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
...++||+|+....+.+||.|++........ ...++++++++.+|+.+..++.++ .||||||||
T Consensus 346 ----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~qr 409 (538)
T 1yqt_A 346 ----DLTVAYKPQYIKADYEGTVYELLSKIDASKL-------NSNFYKTELLKPLGIIDLYDREVN-----ELSGGELQR 409 (538)
T ss_dssp ----CCCEEEECSSCCCCCSSBHHHHHHHHHHHHH-------TCHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHHH
T ss_pred ----CceEEEEecCCcCCCCCcHHHHHHhhhccCC-------CHHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHH
Confidence 2469999999887788999998865311110 012467889999999888777765 899999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeC--CeEEEEcCh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSE--GYPLYSGEA 272 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~--G~iv~~G~~ 272 (508)
|+||++|+.+|++|+|||||+|||+.++.++++.|+++++ .|.|||++|||++ .+..+|||+++|++ |+++..|++
T Consensus 410 v~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~ 488 (538)
T 1yqt_A 410 VAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPP 488 (538)
T ss_dssp HHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCC
T ss_pred HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceEeecCCH
Confidence 9999999999999999999999999999999999999974 5999999999986 57789999999996 788899999
Q ss_pred hhHHHH
Q 010509 273 SGAMNY 278 (508)
Q Consensus 273 ~~~~~~ 278 (508)
+++..-
T Consensus 489 ~~~~~~ 494 (538)
T 1yqt_A 489 MGMREG 494 (538)
T ss_dssp EEHHHH
T ss_pred HHHHhh
Confidence 887653
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.4e-38 Score=345.61 Aligned_cols=207 Identities=21% Similarity=0.256 Sum_probs=175.1
Q ss_pred ceeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 36 PVTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 36 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
...++++|+++.++ ...|+++|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 267 ~~~l~~~~l~~~~~--------------~~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~--- 329 (538)
T 3ozx_A 267 KTKMKWTKIIKKLG--------------DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK--- 329 (538)
T ss_dssp CEEEEECCEEEEET--------------TEEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC---
T ss_pred cceEEEcceEEEEC--------------CEEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC---
Confidence 34688899988764 2458888999999999999999999999999999999999999998764
Q ss_pred ChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
+.++|++|+......+||.|++.+...... .. ..+.++++++.+||.+..++.++ +||||||||
T Consensus 330 -----~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~~--~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QR 393 (538)
T 3ozx_A 330 -----QILSYKPQRIFPNYDGTVQQYLENASKDAL----ST--SSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQK 393 (538)
T ss_dssp -----CCEEEECSSCCCCCSSBHHHHHHHHCSSTT----CT--TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHHH
T ss_pred -----eeeEeechhcccccCCCHHHHHHHhhhhcc----ch--hHHHHHHHHHHcCCHHHhcCChh-----hCCHHHHHH
Confidence 358999999777778999999987421111 01 12457889999999988887765 999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeC--CeEEEEcCh
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSE--GYPLYSGEA 272 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~--G~iv~~G~~ 272 (508)
|+|||+|+.+|++|||||||+|||+.++.++++.|+++++ .|.|||++|||++ .+..+||||++|++ |.....+++
T Consensus 394 v~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~ 472 (538)
T 3ozx_A 394 LYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSP 472 (538)
T ss_dssp HHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCC
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcceeccCCCh
Confidence 9999999999999999999999999999999999999975 5999999999986 57789999999986 566677776
Q ss_pred hhHH
Q 010509 273 SGAM 276 (508)
Q Consensus 273 ~~~~ 276 (508)
.+..
T Consensus 473 ~~~~ 476 (538)
T 3ozx_A 473 VTLK 476 (538)
T ss_dssp EEHH
T ss_pred HHHH
Confidence 6543
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-37 Score=337.27 Aligned_cols=193 Identities=23% Similarity=0.272 Sum_probs=164.8
Q ss_pred ceeeeceEEEEeCC-----eEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCH
Q 010509 64 KAILKGITGMVKPG-----EMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTV 138 (508)
Q Consensus 64 ~~iL~~vs~~v~~G-----e~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv 138 (508)
+.+++|+|+++++| |+++|+||||||||||+|+|+|+++|++|+. + .+..++|++|+.......||
T Consensus 360 ~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~---~~~~i~~~~q~~~~~~~~tv 430 (608)
T 3j16_B 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------I---PKLNVSMKPQKIAPKFPGTV 430 (608)
T ss_dssp EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------C---CSCCEEEECSSCCCCCCSBH
T ss_pred ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------c---cCCcEEEecccccccCCccH
Confidence 35789999999999 7899999999999999999999999999962 1 13469999999776666799
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 010509 139 TETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGL 218 (508)
Q Consensus 139 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgL 218 (508)
+|++.... + .... ..+.++++++.++|.+.+++.++ +|||||||||+||++|+.+|++|+|||||+||
T Consensus 431 ~e~~~~~~--~--~~~~---~~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gL 498 (608)
T 3j16_B 431 RQLFFKKI--R--GQFL---NPQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSAYL 498 (608)
T ss_dssp HHHHHHHC--S--STTT---SHHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTTTC
T ss_pred HHHHHHHh--h--cccc---cHHHHHHHHHHcCChhhhcCChh-----hCCHHHHHHHHHHHHHHhCCCEEEEECCCCCC
Confidence 99875422 1 1111 12456789999999998887765 89999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeC--CeEEEEcChhhHHHH
Q 010509 219 DSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSE--GYPLYSGEASGAMNY 278 (508)
Q Consensus 219 D~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~--G~iv~~G~~~~~~~~ 278 (508)
|+.++.++++.|+++++ .|.|||++|||++ ++..++||+++|++ |+++..|+|+++..-
T Consensus 499 D~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 499 DSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 99999999999999864 5999999999986 57789999999996 899999999987653
No 52
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2.3e-37 Score=345.18 Aligned_cols=206 Identities=23% Similarity=0.309 Sum_probs=141.6
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHH---------------------HHHhcCCCCc-------ccEEEECCEe
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLL---------------------TALGGRLGRI-------NGRITYNGKP 114 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL---------------------~~L~g~~~~~-------~G~I~~~G~~ 114 (508)
.+++|+||||+|++||+++|+||||||||||+ +++.|+..|+ .|.|.++|.+
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 35689999999999999999999999999998 8888887777 5667777766
Q ss_pred CChhccccEEEEecCCC-------------------CCCCCCHHHHHHHHHHhcCCCCCCHHHHH------HHHHHHHHH
Q 010509 115 FSNQMTRNTGFVTQEDV-------------------LSPYLTVTETMVFTALLQLPNSFTEKEKI------KCAEAVMTE 169 (508)
Q Consensus 115 ~~~~~~~~i~yv~Q~~~-------------------l~~~lTv~E~l~~~~~l~~~~~~~~~~~~------~~v~~~l~~ 169 (508)
.....++.+++|+|... .++.+||.||+.+......... ..+... ....++++.
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK-EAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC---------------------------CHHHHHHHHH
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh-hhHHHHHHHHHHHHHHHHHHH
Confidence 54333445556555433 2457899999987533221110 000000 111235888
Q ss_pred cCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecC
Q 010509 170 LGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEILINPS--LLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQ 246 (508)
Q Consensus 170 lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~--illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~ 246 (508)
+||.+. .++.++ +|||||||||+|||||+.+|+ +|||||||+|||+.++..+++.|++++++|.|||++|||
T Consensus 189 ~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd 263 (670)
T 3ux8_A 189 VGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHD 263 (670)
T ss_dssp TTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred cCCchhhhcCCcc-----cCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 999865 566664 899999999999999999998 999999999999999999999999998889999999999
Q ss_pred cchHHHhhccEEEEE------eCCeEEEEcChhhHH
Q 010509 247 PSNMLYYMFHKVLLL------SEGYPLYSGEASGAM 276 (508)
Q Consensus 247 ~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~ 276 (508)
++ .+ ..||++++| ++|++++.|+++++.
T Consensus 264 ~~-~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 264 ED-TM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp HH-HH-HHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HH-HH-hhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 86 44 459999999 899999999998764
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=1.2e-37 Score=342.66 Aligned_cols=182 Identities=26% Similarity=0.373 Sum_probs=154.0
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEE---------EECCEeCCh------hccccEEEEecC
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRI---------TYNGKPFSN------QMTRNTGFVTQE 129 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I---------~~~G~~~~~------~~~~~i~yv~Q~ 129 (508)
.+|+|+| ++++||+++|+||||||||||||+|+|+++|++|++ .++|.++.. ..+..+++++|+
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~ 184 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY 184 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSC
T ss_pred eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeech
Confidence 4899999 999999999999999999999999999999999996 456765422 113458899987
Q ss_pred CCCCC---CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCC
Q 010509 130 DVLSP---YLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINP 206 (508)
Q Consensus 130 ~~l~~---~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P 206 (508)
....+ ..||.|++... .. .++++++++.+||.+..++.++ +|||||||||+||+||+.+|
T Consensus 185 ~~~~~~~~~~tv~e~l~~~------~~------~~~~~~~L~~lgL~~~~~~~~~-----~LSGGekQRvaIAraL~~~P 247 (607)
T 3bk7_A 185 VDLLPKAVKGKVRELLKKV------DE------VGKFEEVVKELELENVLDRELH-----QLSGGELQRVAIAAALLRKA 247 (607)
T ss_dssp GGGGGGTCCSBHHHHHHHT------CC------SSCHHHHHHHTTCTTGGGSBGG-----GCCHHHHHHHHHHHHHHSCC
T ss_pred hhhchhhccccHHHHhhhh------HH------HHHHHHHHHHcCCCchhCCChh-----hCCHHHHHHHHHHHHHhcCC
Confidence 43322 13899988631 10 1347789999999998888775 89999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 207 SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 207 ~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
++|||||||+|||+.++.++++.|++++++|.|||++|||++ .+..++||+++|+++.
T Consensus 248 ~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~-~~~~~adri~vl~~~~ 305 (607)
T 3bk7_A 248 HFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLA-VLDYLSDVIHVVYGEP 305 (607)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEESCT
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChH-HHHhhCCEEEEECCCc
Confidence 999999999999999999999999999878999999999986 5778999999998653
No 54
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.9e-37 Score=337.04 Aligned_cols=182 Identities=25% Similarity=0.342 Sum_probs=153.7
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEE---------EECCEeCCh------hccccEEEEecC
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRI---------TYNGKPFSN------QMTRNTGFVTQE 129 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I---------~~~G~~~~~------~~~~~i~yv~Q~ 129 (508)
.+|+|+| ++++||+++|+||||||||||||+|+|+++|++|++ .++|.++.. ..+..+++++|+
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~ 114 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQY 114 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSC
T ss_pred ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhh
Confidence 4899999 999999999999999999999999999999999996 456665421 112358899997
Q ss_pred CCCCCC---CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCC
Q 010509 130 DVLSPY---LTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINP 206 (508)
Q Consensus 130 ~~l~~~---lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P 206 (508)
....+. .|+.|++... . ..++++++++.+||.+..++.++ +|||||||||+||+||+.+|
T Consensus 115 ~~~~~~~~~~~v~e~~~~~---~---------~~~~~~~~l~~lgl~~~~~~~~~-----~LSgGekQRv~iAraL~~~P 177 (538)
T 1yqt_A 115 VDLIPKAVKGKVIELLKKA---D---------ETGKLEEVVKALELENVLEREIQ-----HLSGGELQRVAIAAALLRNA 177 (538)
T ss_dssp GGGSGGGCCSBHHHHHHHH---C---------SSSCHHHHHHHTTCTTTTTSBGG-----GCCHHHHHHHHHHHHHHSCC
T ss_pred hhhcchhhhccHHHHHhhh---h---------HHHHHHHHHHHcCCChhhhCChh-----hCCHHHHHHHHHHHHHhcCC
Confidence 544332 3898887531 0 11357789999999988887765 89999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 207 SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 207 ~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
++|||||||++||+.++..+++.|++++++|.|||++|||+. .+..+|||+++|++|.
T Consensus 178 ~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~-~~~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 178 TFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA-VLDYLSDIIHVVYGEP 235 (538)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEET
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HHHHhCCEEEEEcCcc
Confidence 999999999999999999999999999878999999999986 6788999999998653
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=6.8e-36 Score=340.17 Aligned_cols=199 Identities=22% Similarity=0.306 Sum_probs=167.9
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..+...|++++|+ ++.+|+|+||++++||+++|+||||||||||||+|+| |+| +|.+..
T Consensus 434 ~~L~~~~ls~~yg-------------~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~ 492 (986)
T 2iw3_A 434 EDLCNCEFSLAYG-------------AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQ 492 (986)
T ss_dssp CEEEEEEEEEEET-------------TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCT
T ss_pred ceeEEeeEEEEEC-------------CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccc
Confidence 4577778888864 4679999999999999999999999999999999995 443 454432
Q ss_pred hhccccEEEEecCC-CCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCHHHHH
Q 010509 117 NQMTRNTGFVTQED-VLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSGGERK 194 (508)
Q Consensus 117 ~~~~~~i~yv~Q~~-~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSGGerq 194 (508)
.. ..++|++|+. .+++.+||.|++.+ . .. .. +++++++++.+||. +..++.++ +|||||||
T Consensus 493 ~~--~~~~~v~q~~~~~~~~ltv~e~l~~--~--~~-~~-----~~~v~~~L~~lgL~~~~~~~~~~-----~LSGGqkQ 555 (986)
T 2iw3_A 493 EE--CRTVYVEHDIDGTHSDTSVLDFVFE--S--GV-GT-----KEAIKDKLIEFGFTDEMIAMPIS-----ALSGGWKM 555 (986)
T ss_dssp TT--SCEEETTCCCCCCCTTSBHHHHHHT--T--CS-SC-----HHHHHHHHHHTTCCHHHHHSBGG-----GCCHHHHH
T ss_pred cc--eeEEEEcccccccccCCcHHHHHHH--h--hc-CH-----HHHHHHHHHHcCCChhhhcCCcc-----cCCHHHHH
Confidence 22 2478999984 67889999999975 1 11 11 45688999999995 66777775 89999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE-EEcChh
Q 010509 195 RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL-YSGEAS 273 (508)
Q Consensus 195 Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv-~~G~~~ 273 (508)
||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++|||+. .+.++||++++|++|+++ +.|+++
T Consensus 556 RvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---~g~tvIivSHdl~-~l~~~adrii~L~~G~iv~~~G~~~ 631 (986)
T 2iw3_A 556 KLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---CGITSITISHDSV-FLDNVCEYIINYEGLKLRKYKGNFT 631 (986)
T ss_dssp HHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH---SCSEEEEECSCHH-HHHHHCSEEEEEETTEEEEEESCHH
T ss_pred HHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh---CCCEEEEEECCHH-HHHHhCCEEEEEECCeeecCCCCHH
Confidence 99999999999999999999999999999999999998 5899999999986 577899999999999997 789998
Q ss_pred hHHH
Q 010509 274 GAMN 277 (508)
Q Consensus 274 ~~~~ 277 (508)
+...
T Consensus 632 e~~~ 635 (986)
T 2iw3_A 632 EFVK 635 (986)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7654
No 56
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.7e-36 Score=342.33 Aligned_cols=208 Identities=21% Similarity=0.307 Sum_probs=163.7
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..|+++|++++|+. ..+++|+|+|+++++||+++|+||||||||||+|+|+|+++|++|+|.++|.
T Consensus 670 ~mL~v~nLs~~Y~g-----------~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~--- 735 (986)
T 2iw3_A 670 AIVKVTNMEFQYPG-----------TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN--- 735 (986)
T ss_dssp EEEEEEEEEECCTT-----------CSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT---
T ss_pred ceEEEEeeEEEeCC-----------CCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc---
Confidence 46999999988641 1256899999999999999999999999999999999999999999999863
Q ss_pred hhccccEEEEecCCCC----CCCCCHHHHHHHHHHhc------------CC-----------------------------
Q 010509 117 NQMTRNTGFVTQEDVL----SPYLTVTETMVFTALLQ------------LP----------------------------- 151 (508)
Q Consensus 117 ~~~~~~i~yv~Q~~~l----~~~lTv~E~l~~~~~l~------------~~----------------------------- 151 (508)
..++|++|++.. ....|+.|++.+..... +.
T Consensus 736 ----~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~ 811 (986)
T 2iw3_A 736 ----CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKF 811 (986)
T ss_dssp ----CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEE
T ss_pred ----cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhh
Confidence 248899887521 12457777775421100 00
Q ss_pred -----------------------CCC--------C--------------------------HHHHHHHHHHHHHHcCCCc
Q 010509 152 -----------------------NSF--------T--------------------------EKEKIKCAEAVMTELGLSE 174 (508)
Q Consensus 152 -----------------------~~~--------~--------------------------~~~~~~~v~~~l~~lgL~~ 174 (508)
... + +...+++++++++.+||.+
T Consensus 812 ~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~ 891 (986)
T 2iw3_A 812 KNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDP 891 (986)
T ss_dssp TTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCH
T ss_pred cccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCc
Confidence 000 0 0001356788999999975
Q ss_pred -c-cccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHH
Q 010509 175 -C-KNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLY 252 (508)
Q Consensus 175 -~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~ 252 (508)
. .++.++ +|||||||||+||++|+.+|++|||||||+|||+.+...+.+.|+++ |.|||++|||++ .+.
T Consensus 892 ~~~~~~~~~-----~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~ 962 (986)
T 2iw3_A 892 EIVSHSRIR-----GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF---EGGVIIITHSAE-FTK 962 (986)
T ss_dssp HHHHHSCGG-----GCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHT
T ss_pred hhhcCCCcc-----ccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh---CCEEEEEECCHH-HHH
Confidence 3 466554 89999999999999999999999999999999999999999988765 579999999975 577
Q ss_pred hhccEEEEEeCCeEEEEcC
Q 010509 253 YMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 253 ~~~D~v~lL~~G~iv~~G~ 271 (508)
.+||++++|++|+++..|+
T Consensus 963 ~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 963 NLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp TTCCEEECCBTTBCCC---
T ss_pred HhCCEEEEEECCEEEEeCC
Confidence 8999999999999987774
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.3e-34 Score=322.91 Aligned_cols=196 Identities=26% Similarity=0.388 Sum_probs=150.4
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh----------------------cCCCCcccEEEECCEeCChhc--
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG----------------------GRLGRINGRITYNGKPFSNQM-- 119 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~----------------------g~~~~~~G~I~~~G~~~~~~~-- 119 (508)
+.+|+|||++|++||+++|+||||||||||+++|. |+. +.+|.|.++|.++....
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~-~~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE-HLDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG-GCSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc-ccCceeEeccccCCCCCCc
Confidence 45899999999999999999999999999998764 222 23467888887653100
Q ss_pred -------------------------------------------cccEEEEecCCCCCC----------------------
Q 010509 120 -------------------------------------------TRNTGFVTQEDVLSP---------------------- 134 (508)
Q Consensus 120 -------------------------------------------~~~i~yv~Q~~~l~~---------------------- 134 (508)
.+..|+++|+..++|
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 011244444433332
Q ss_pred ----------CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCHHHHHHHHHHHHHh
Q 010509 135 ----------YLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSGGERKRVSIGQEIL 203 (508)
Q Consensus 135 ----------~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~Ia~aL~ 203 (508)
.+||.||+.+.... . ..+++.+.++.+||.+ ..++.+ .+|||||||||+|||||+
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~-------~--~~~~~~~~l~~~~l~~~~~~~~~-----~~LSgG~~qrv~iAraL~ 559 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASI-------P--KIKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELH 559 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTC-------H--HHHHHHHHHHHTTCTTSBTTCCG-----GGCCHHHHHHHHHHHHHH
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHh-------h--hHHHHHHHHHHcCCchhhccCCc-----hhCCHHHHHHHHHHHHHh
Confidence 47899999875321 1 2244567888999964 345444 599999999999999999
Q ss_pred hCC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhh
Q 010509 204 INP---SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASG 274 (508)
Q Consensus 204 ~~P---~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~ 274 (508)
.+| ++|||||||+|||+.++.++++.|++++++|+|||++|||++ .+ ..|||+++| ++|++++.|++++
T Consensus 560 ~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~-~~-~~~d~i~~l~~~~g~~~G~i~~~g~~~~ 637 (670)
T 3ux8_A 560 RRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTPEE 637 (670)
T ss_dssp SCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEECHHH
T ss_pred hCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH-HH-HhCCEEEEecCCcCCCCCEEEEecCHHH
Confidence 987 599999999999999999999999999888999999999986 44 569999999 8999999999988
Q ss_pred HH
Q 010509 275 AM 276 (508)
Q Consensus 275 ~~ 276 (508)
+.
T Consensus 638 ~~ 639 (670)
T 3ux8_A 638 VA 639 (670)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 58
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.7e-34 Score=317.24 Aligned_cols=187 Identities=24% Similarity=0.323 Sum_probs=147.1
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEE-----------EECCEeCCh----hcccc--EEEEe
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRI-----------TYNGKPFSN----QMTRN--TGFVT 127 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I-----------~~~G~~~~~----~~~~~--i~yv~ 127 (508)
..|++++ .+++||+++|+||||||||||||+|+|+++|++|+| .+.|.++.. ...+. ..+.+
T Consensus 92 ~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 170 (608)
T 3j16_B 92 FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKP 170 (608)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEEC
T ss_pred eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHHHHhhhhhhch
Confidence 4677777 689999999999999999999999999999999998 333433211 01111 23344
Q ss_pred cCCCC------CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHH
Q 010509 128 QEDVL------SPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQE 201 (508)
Q Consensus 128 Q~~~l------~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~a 201 (508)
|.... -+..++.+.+.... .. ..++++++++.+||.+..++.++ +|||||||||+||+|
T Consensus 171 ~~~~~~~~~~~~~~~~v~~~l~~~~------~~----~~~~~~~~l~~~gl~~~~~~~~~-----~LSgGe~Qrv~iAra 235 (608)
T 3j16_B 171 QYVDNIPRAIKGPVQKVGELLKLRM------EK----SPEDVKRYIKILQLENVLKRDIE-----KLSGGELQRFAIGMS 235 (608)
T ss_dssp CCTTTHHHHCSSSSSHHHHHHHHHC------CS----CHHHHHHHHHHHTCTGGGGSCTT-----TCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhcchhhHHHHHHhhhh------hh----HHHHHHHHHHHcCCcchhCCChH-----HCCHHHHHHHHHHHH
Confidence 43211 12235565554210 11 12568899999999998888775 899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEE
Q 010509 202 ILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 202 L~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
|+.+|++|+|||||+|||+.++..+.+.|++++++|+|||++||+++ .+..++||+++|++|..++
T Consensus 236 L~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~-~~~~~~drv~vl~~~~~~~ 301 (608)
T 3j16_B 236 CVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS-VLDYLSDFVCIIYGVPSVY 301 (608)
T ss_dssp HHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH-HHHHHCSEEEEEESCTTTE
T ss_pred HHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEEEEEeCCcccc
Confidence 99999999999999999999999999999999888999999999986 5788999999999876554
No 59
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.8e-34 Score=313.25 Aligned_cols=174 Identities=21% Similarity=0.263 Sum_probs=141.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEE-----------EECCEeCChh----c--cccEEEEecCC----CC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRI-----------TYNGKPFSNQ----M--TRNTGFVTQED----VL 132 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I-----------~~~G~~~~~~----~--~~~i~yv~Q~~----~l 132 (508)
+++||++||+||||||||||+|+|+|+++|++|+| .++|+++... . ...+....|.. .+
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKF 101 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGTT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhhh
Confidence 46999999999999999999999999999999998 6777765321 1 12344444443 22
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 010509 133 SPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLD 212 (508)
Q Consensus 133 ~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLD 212 (508)
+ ..|++|++... +.+++++++++.+|+.+..++.++ +|||||||||+||+||+.+|++|+||
T Consensus 102 ~-~~~v~~~l~~~------------~~~~~~~~~l~~l~l~~~~~~~~~-----~LSgGe~Qrv~iA~aL~~~p~illlD 163 (538)
T 3ozx_A 102 L-KGTVNEILTKI------------DERGKKDEVKELLNMTNLWNKDAN-----ILSGGGLQRLLVAASLLREADVYIFD 163 (538)
T ss_dssp C-CSBHHHHHHHH------------CCSSCHHHHHHHTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEE
T ss_pred c-cCcHHHHhhcc------------hhHHHHHHHHHHcCCchhhcCChh-----hCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 3 24788765421 011346789999999998888775 89999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEE
Q 010509 213 EPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPL 267 (508)
Q Consensus 213 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv 267 (508)
|||++||+.++..+.+.|+++++ |+|||+++||++ .+..+||++++|++|..+
T Consensus 164 EPts~LD~~~~~~l~~~l~~l~~-g~tii~vsHdl~-~~~~~~d~i~vl~~~~~~ 216 (538)
T 3ozx_A 164 QPSSYLDVRERMNMAKAIRELLK-NKYVIVVDHDLI-VLDYLTDLIHIIYGESSV 216 (538)
T ss_dssp STTTTCCHHHHHHHHHHHHHHCT-TSEEEEECSCHH-HHHHHCSEEEEEEEETTT
T ss_pred CCcccCCHHHHHHHHHHHHHHhC-CCEEEEEEeChH-HHHhhCCEEEEecCCccc
Confidence 99999999999999999999976 999999999986 678899999999876543
No 60
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.98 E-value=1.9e-32 Score=309.18 Aligned_cols=206 Identities=26% Similarity=0.368 Sum_probs=157.1
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHH-HhcCC-------CC-----
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTA-LGGRL-------GR----- 103 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~-L~g~~-------~~----- 103 (508)
..|+++|+++ ..|+|||++|++||+++|+|+||||||||++. |+|.+ .+
T Consensus 501 ~~L~v~~l~~------------------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~ 562 (842)
T 2vf7_A 501 GWLELNGVTR------------------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPED 562 (842)
T ss_dssp CEEEEEEEEE------------------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC--------
T ss_pred ceEEEEeeee------------------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccc
Confidence 3588888853 15999999999999999999999999999996 76542 12
Q ss_pred -------------ccc-------EEEECCEeCChhc--------------c---------ccEEE---------------
Q 010509 104 -------------ING-------RITYNGKPFSNQM--------------T---------RNTGF--------------- 125 (508)
Q Consensus 104 -------------~~G-------~I~~~G~~~~~~~--------------~---------~~i~y--------------- 125 (508)
.+| .|.++|+++.... + +..||
T Consensus 563 ~~~~~~~~~~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~ 642 (842)
T 2vf7_A 563 DEDPADHTAGSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCE 642 (842)
T ss_dssp ---------CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCT
T ss_pred cccccccccccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccc
Confidence 467 6889988763211 0 11122
Q ss_pred -------EecCCCCCC--------------------------------CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHH
Q 010509 126 -------VTQEDVLSP--------------------------------YLTVTETMVFTALLQLPNSFTEKEKIKCAEAV 166 (508)
Q Consensus 126 -------v~Q~~~l~~--------------------------------~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~ 166 (508)
+..+..+++ .+|+.|++.|.. . .+ ..+++.++
T Consensus 643 ~c~g~G~~~~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~------~-~~--~~~~~~~~ 713 (842)
T 2vf7_A 643 HCQGEGWVMVELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFA------D-ES--AIFRALDT 713 (842)
T ss_dssp TTTTCSEEEETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTT------T-SH--HHHHHHHH
T ss_pred cccCCCccchhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhh------c-ch--HHHHHHHH
Confidence 221222222 235555554421 1 11 23467899
Q ss_pred HHHcCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEE
Q 010509 167 MTELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEILIN---PSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVM 242 (508)
Q Consensus 167 l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~---P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~ 242 (508)
|+.+||... .++.+ ..|||||||||+||++|+.+ |++|||||||+|||+.+..++++.|++++++|.|||+
T Consensus 714 L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIv 788 (842)
T 2vf7_A 714 LREVGLGYLRLGQPA-----TELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIA 788 (842)
T ss_dssp HHHTTCTTSBTTCCG-----GGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHcCCCcccccCCc-----ccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999873 45544 59999999999999999996 7999999999999999999999999999988999999
Q ss_pred EecCcchHHHhhccEEEEE------eCCeEEEEcChhhHH
Q 010509 243 TIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGAM 276 (508)
Q Consensus 243 s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~ 276 (508)
++||++ .+ ..||++++| ++|++++.|+++++.
T Consensus 789 isHdl~-~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 789 VEHKMQ-VV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp ECCCHH-HH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred EcCCHH-HH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 999986 45 789999999 799999999998764
No 61
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.98 E-value=3.8e-32 Score=307.38 Aligned_cols=195 Identities=26% Similarity=0.383 Sum_probs=153.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh-cC----C---CCcc-------c------EEEECCEeCChhc-----
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG-GR----L---GRIN-------G------RITYNGKPFSNQM----- 119 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~-g~----~---~~~~-------G------~I~~~G~~~~~~~----- 119 (508)
.|+|||++|++||+++|+|+||||||||+++|. |. + .+.. | .|.++|.++....
T Consensus 639 ~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~pa 718 (972)
T 2r6f_A 639 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPA 718 (972)
T ss_dssp SCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHH
T ss_pred ccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcccccCccccch
Confidence 599999999999999999999999999999853 21 1 1122 3 4788887763100
Q ss_pred ------------------cccEEEEecCCCCC----------------------C-------------------------
Q 010509 120 ------------------TRNTGFVTQEDVLS----------------------P------------------------- 134 (508)
Q Consensus 120 ------------------~~~i~yv~Q~~~l~----------------------~------------------------- 134 (508)
.+.+||++|...+. +
T Consensus 719 ty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 798 (972)
T 2r6f_A 719 TYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKG 798 (972)
T ss_dssp HHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhccccccccccccccccccchhhhhhccC
Confidence 13357777743221 1
Q ss_pred -------CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCHHHHHHHHHHHHHhhCC
Q 010509 135 -------YLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSGGERKRVSIGQEILINP 206 (508)
Q Consensus 135 -------~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P 206 (508)
.+||.|++.|... . .. .+++.++++.+||.+ ..++.+ .+|||||||||+||++|+.+|
T Consensus 799 ~sI~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~~gL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p 864 (972)
T 2r6f_A 799 KNIAEVLDMTVEDALDFFAS------I-PK--IKRKLETLYDVGLGYMKLGQPA-----TTLSGGEAQRVKLAAELHRRS 864 (972)
T ss_dssp BCHHHHHTSBHHHHHHHTCS------C-HH--HHHHHHHHHHTTCSSSBTTCCG-----GGCCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHhhhcCHHHHHHHHhc------c-hh--HHHHHHHHHHcCCCcccccCch-----hhCCHHHHHHHHHHHHHhcCC
Confidence 4678888776421 1 11 234578999999987 556555 489999999999999999865
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhhHH
Q 010509 207 ---SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGAM 276 (508)
Q Consensus 207 ---~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~ 276 (508)
++|||||||+|||+.++..+++.|++++++|.|||+++||+. .+ ..||++++| ++|++++.|+++++.
T Consensus 865 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~i-~~aDrIivL~p~gG~~~G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 865 NGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLD-VI-KTADYIIDLGPEGGDRGGQIVAVGTPEEVA 941 (972)
T ss_dssp CSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEECSSSTTSCCSEEEEESHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEEcCCCCCCCCEEEEecCHHHHH
Confidence 999999999999999999999999999988999999999986 34 679999999 789999999998775
No 62
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=5.2e-32 Score=307.88 Aligned_cols=197 Identities=26% Similarity=0.429 Sum_probs=153.6
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHH---------HHHhcCCC------Cccc------EEEECCEeCChh----
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLL---------TALGGRLG------RING------RITYNGKPFSNQ---- 118 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL---------~~L~g~~~------~~~G------~I~~~G~~~~~~---- 118 (508)
...|+|||+++++|++++|+|+||||||||+ +.+.+... +.+| .+.+++.++...
T Consensus 597 ~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~ 676 (916)
T 3pih_A 597 HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSN 676 (916)
T ss_dssp STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCC
T ss_pred cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccc
Confidence 3469999999999999999999999999997 44444322 2223 355555443210
Q ss_pred -----------------------------------------ccccEEEEecCCCCCCC----------------------
Q 010509 119 -----------------------------------------MTRNTGFVTQEDVLSPY---------------------- 135 (508)
Q Consensus 119 -----------------------------------------~~~~i~yv~Q~~~l~~~---------------------- 135 (508)
..+..|++.|+..++|.
T Consensus 677 ~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~ 756 (916)
T 3pih_A 677 PATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITY 756 (916)
T ss_dssp HHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCB
T ss_pred ccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhh
Confidence 01235788888766653
Q ss_pred ----------CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccc-ccccCCCCCCccCHHHHHHHHHHHHHhh
Q 010509 136 ----------LTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECK-NSLIGGPLTRGVSGGERKRVSIGQEILI 204 (508)
Q Consensus 136 ----------lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~vg~~~~~~LSGGerqRv~Ia~aL~~ 204 (508)
+||.|++.|.... ...+++.++|+.+||.... ++ .+.+|||||||||+||++|+.
T Consensus 757 ~g~~i~~vl~~tv~eal~f~~~~---------~~~~~~~~~L~~vGL~~~~lgq-----~~~~LSGGErQRV~LAraL~~ 822 (916)
T 3pih_A 757 KGKNISDILDMTVDEALEFFKNI---------PSIKRTLQVLHDVGLGYVKLGQ-----PATTLSGGEAQRIKLASELRK 822 (916)
T ss_dssp TTBCHHHHHSSBHHHHHHHTTTC---------HHHHHHHHHHHHTTGGGSBTTC-----CSTTCCHHHHHHHHHHHHHTS
T ss_pred ccCCHHHHhhCCHHHHHHHHhcc---------hhHHHHHHHHHHcCCchhhccC-----CccCCCHHHHHHHHHHHHHhh
Confidence 6788888775321 1234677899999997532 33 345899999999999999998
Q ss_pred CC---CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhhH
Q 010509 205 NP---SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGA 275 (508)
Q Consensus 205 ~P---~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~ 275 (508)
+| ++|||||||+|||+.+...+++.|++++++|.|||+++||++ .+ ..||+|++| ++|++++.|+++++
T Consensus 823 ~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~-~i-~~ADrIivLgp~gg~~~G~Iv~~Gtpeel 900 (916)
T 3pih_A 823 RDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLD-VI-KNADHIIDLGPEGGKEGGYIVATGTPEEI 900 (916)
T ss_dssp CCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSGGGCCEEEEEESHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHH-HH-HhCCEEEEecCCCCCCCCEEEEEcCHHHH
Confidence 75 799999999999999999999999999988999999999986 45 559999999 89999999999987
Q ss_pred H
Q 010509 276 M 276 (508)
Q Consensus 276 ~ 276 (508)
.
T Consensus 901 ~ 901 (916)
T 3pih_A 901 A 901 (916)
T ss_dssp H
T ss_pred H
Confidence 5
No 63
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=1.6e-31 Score=303.40 Aligned_cols=196 Identities=22% Similarity=0.377 Sum_probs=151.0
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh-c----CCC---CcccE-------------EEECCEeCChh------
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG-G----RLG---RINGR-------------ITYNGKPFSNQ------ 118 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~-g----~~~---~~~G~-------------I~~~G~~~~~~------ 118 (508)
+|+|||++|++||+++|+|+||||||||+++|. | .+. +..|. |.++|.++...
T Consensus 657 ~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~pa 736 (993)
T 2ygr_A 657 NLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPA 736 (993)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHH
T ss_pred cccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceEEEecCcccccCcccchh
Confidence 599999999999999999999999999999853 2 121 12333 45565554210
Q ss_pred -----------------ccccEEEEecCCCC----------------------CC-------------------------
Q 010509 119 -----------------MTRNTGFVTQEDVL----------------------SP------------------------- 134 (508)
Q Consensus 119 -----------------~~~~i~yv~Q~~~l----------------------~~------------------------- 134 (508)
..+..||++|...+ .+
T Consensus 737 ty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g 816 (993)
T 2ygr_A 737 TYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKG 816 (993)
T ss_dssp HHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTT
T ss_pred hhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehhccccccchhhhhhhccC
Confidence 01335677664322 11
Q ss_pred -------CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCHHHHHHHHHHHHHhhCC
Q 010509 135 -------YLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSGGERKRVSIGQEILINP 206 (508)
Q Consensus 135 -------~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P 206 (508)
.+||.|++.|... . .. .+++.++++.+||.. ..++.+ .+|||||||||+||++|+.+|
T Consensus 817 ~si~dvl~ltv~e~l~~~~~------~-~~--~~~~~~~L~~lgL~~~~l~~~~-----~~LSGGekQRv~LAraL~~~p 882 (993)
T 2ygr_A 817 KTVSEVLDMSIEEAAEFFEP------I-AG--VHRYLRTLVDVGLGYVRLGQPA-----PTLSGGEAQRVKLASELQKRS 882 (993)
T ss_dssp BCHHHHHSSBHHHHHHHSTT------C-HH--HHHHHHHHHHTTGGGSBTTCCG-----GGSCHHHHHHHHHHHHHSSCC
T ss_pred CCHHHHhhccHHHHHHHhhc------c-hH--HHHHHHHHHHcCCCcccccCcc-----ccCCHHHHHHHHHHHHHHhCC
Confidence 3577777776431 1 11 234578999999986 455554 489999999999999999865
Q ss_pred ---CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhhHHH
Q 010509 207 ---SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGAMN 277 (508)
Q Consensus 207 ---~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~~ 277 (508)
++|||||||+|||+.+...+++.|++++++|.|||+++||+. .+ ..||++++| ++|++++.|+++++..
T Consensus 883 ~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~-~i-~~aDrIivL~p~gg~~~G~Iv~~G~~~el~~ 960 (993)
T 2ygr_A 883 TGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLD-VI-KTSDWIIDLGPEGGAGGGTVVAQGTPEDVAA 960 (993)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-TTCSEEEEEESSSTTSCSEEEEEECHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHH-HH-HhCCEEEEECCCcCCCCCEEEEecCHHHHHh
Confidence 999999999999999999999999999888999999999986 35 679999999 7899999999988754
No 64
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.97 E-value=6.6e-30 Score=268.45 Aligned_cols=201 Identities=20% Similarity=0.262 Sum_probs=147.1
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC--------------------------------------Cccc
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG--------------------------------------RING 106 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~--------------------------------------~~~G 106 (508)
.+++++|+++++| +++|+|||||||||||++|+++.+ +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4789999999999 999999999999999999977653 3478
Q ss_pred EEEECCEeCCh----hc-cccEEEEecCCCCCCCCCHHHHHHHHHHhc-----------------------CCCCCC---
Q 010509 107 RITYNGKPFSN----QM-TRNTGFVTQEDVLSPYLTVTETMVFTALLQ-----------------------LPNSFT--- 155 (508)
Q Consensus 107 ~I~~~G~~~~~----~~-~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~-----------------------~~~~~~--- 155 (508)
++.+||++++. .. +..+++++|++.++.. +..+...|.-... +.....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~ 206 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKH 206 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 89999999864 22 3348999999876543 5554443321110 000000
Q ss_pred -------------------------------HHHHHHHHHHHHHHcCCCccc----------------cc---ccCC---
Q 010509 156 -------------------------------EKEKIKCAEAVMTELGLSECK----------------NS---LIGG--- 182 (508)
Q Consensus 156 -------------------------------~~~~~~~v~~~l~~lgL~~~~----------------~~---~vg~--- 182 (508)
.+...+.+++.++.+++.+.. ++ .+..
T Consensus 207 ~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 286 (415)
T 4aby_A 207 PTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPG 286 (415)
T ss_dssp ---CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSS
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCC
Confidence 001123455566667665311 00 1110
Q ss_pred ---CCCCc-cCHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhcc
Q 010509 183 ---PLTRG-VSGGERKRVSIGQEILINP--SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFH 256 (508)
Q Consensus 183 ---~~~~~-LSGGerqRv~Ia~aL~~~P--~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D 256 (508)
...+. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ +|.|||++||++. +...||
T Consensus 287 ~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~-~~~~vi~itH~~~--~~~~~d 363 (415)
T 4aby_A 287 EELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA-DTRQVLVVTHLAQ--IAARAH 363 (415)
T ss_dssp CCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSCHH--HHTTCS
T ss_pred CcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEeCcHH--HHhhcC
Confidence 11122 6999999999999999999 9999999999999999999999999998 5899999999984 447899
Q ss_pred EEEEE----eCCeEEEEc
Q 010509 257 KVLLL----SEGYPLYSG 270 (508)
Q Consensus 257 ~v~lL----~~G~iv~~G 270 (508)
++++| ++|+++...
T Consensus 364 ~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 364 HHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEEEEEEETTEEEEEE
T ss_pred eEEEEEEeccCCceEEEE
Confidence 99999 999987654
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.97 E-value=3.2e-33 Score=298.02 Aligned_cols=185 Identities=14% Similarity=0.103 Sum_probs=150.6
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCccc-E-EEECCEeCChhccccEEEEecCCC---CCCCCCHHHHH
Q 010509 68 KGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING-R-ITYNGKPFSNQMTRNTGFVTQEDV---LSPYLTVTETM 142 (508)
Q Consensus 68 ~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G-~-I~~~G~~~~~~~~~~i~yv~Q~~~---l~~~lTv~E~l 142 (508)
.++|+++++|++++|+||||||||||+|+|+|+..|++| + |.++|. .++.++|+||+.. +.+.+|++||+
T Consensus 129 ~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~-----~~~~i~~vpq~~~l~~~~~~~tv~eni 203 (460)
T 2npi_A 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD-----PQQPIFTVPGCISATPISDILDAQLPT 203 (460)
T ss_dssp HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC-----TTSCSSSCSSCCEEEECCSCCCTTCTT
T ss_pred hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC-----ccCCeeeeccchhhcccccccchhhhh
Confidence 478999999999999999999999999999999999999 9 999983 3567999999984 45568999988
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHH--HhhCCCE----EEEeC-CC
Q 010509 143 VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQE--ILINPSL----LFLDE-PT 215 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~a--L~~~P~i----llLDE-Pt 215 (508)
|+....... . ..++++++++.+|+.+..+ . ++|||||||||+||++ |+.+|++ ||||| ||
T Consensus 204 -~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~--~-----~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPt 270 (460)
T 2npi_A 204 -WGQSLTSGA--T---LLHNKQPMVKNFGLERINE--N-----KDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSI 270 (460)
T ss_dssp -CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG--C-----HHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCG
T ss_pred -cccccccCc--c---hHHHHHHHHHHhCCCcccc--h-----hhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcc
Confidence 653321110 0 1234556788889987665 2 4899999999999999 9999999 99999 99
Q ss_pred CCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc--h---HHHhhccE-----EEEEe-CCeEEEEcChhhH
Q 010509 216 SGLDSTIAQQILSILLKLANGGRTIVMTIHQPS--N---MLYYMFHK-----VLLLS-EGYPLYSGEASGA 275 (508)
Q Consensus 216 sgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~--~---~~~~~~D~-----v~lL~-~G~iv~~G~~~~~ 275 (508)
++||+. ...+.+++++ .|+|+|+++|+.+ . .+.+++|+ +++|+ +|+++ .|++++.
T Consensus 271 s~LD~~-~~~l~~l~~~---~~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 271 SQLDEN-LAELHHIIEK---LNVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp GGSCSS-CHHHHHHHHH---TTCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred cccChh-HHHHHHHHHH---hCCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 999999 5555555544 3789999999976 1 45688999 99999 99999 9988755
No 66
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.95 E-value=2.6e-31 Score=255.12 Aligned_cols=144 Identities=19% Similarity=0.278 Sum_probs=106.4
Q ss_pred cccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC---hhccccEEEEecCCCCCCC
Q 010509 59 KKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS---NQMTRNTGFVTQEDVLSPY 135 (508)
Q Consensus 59 ~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~---~~~~~~i~yv~Q~~~l~~~ 135 (508)
|+++++.+|+|+ ++||+++|+||||||||||+|+|+|+ +|++|+|.. .++. ...++.+||++|++
T Consensus 8 k~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~~~~~~~~~ig~v~q~~----- 75 (208)
T 3b85_A 8 KTLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTRPAVEAGEKLGFLPGTL----- 75 (208)
T ss_dssp CSHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEECSCCTTCCCCSSCC-------
T ss_pred CCHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecCCchhhhcceEEecCCH-----
Confidence 345567899996 89999999999999999999999999 999999943 2221 13466799999975
Q ss_pred CCHHHHH-HHHH----HhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEE
Q 010509 136 LTVTETM-VFTA----LLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLF 210 (508)
Q Consensus 136 lTv~E~l-~~~~----~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~ill 210 (508)
+||+ .+.. ... .... .++++++++. |+ ||||||+|||+|+.+|++||
T Consensus 76 ---~enl~~~~~~~~~~~~--~~~~----~~~~~~~l~~-gl------------------Gq~qrv~lAraL~~~p~lll 127 (208)
T 3b85_A 76 ---NEKIDPYLRPLHDALR--DMVE----PEVIPKLMEA-GI------------------VEVAPLAYMRGRTLNDAFVI 127 (208)
T ss_dssp -------CTTTHHHHHHHT--TTSC----TTHHHHHHHT-TS------------------EEEEEGGGGTTCCBCSEEEE
T ss_pred ---HHHHHHHHHHHHHHHH--Hhcc----HHHHHHHHHh-CC------------------chHHHHHHHHHHhcCCCEEE
Confidence 4444 2211 111 0001 1235555553 22 99999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 211 LDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 211 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
|||||+| ++..+++.|+++ ++|+||| +|||++
T Consensus 128 LDEPts~----~~~~l~~~l~~l-~~g~tii-vtHd~~ 159 (208)
T 3b85_A 128 LDEAQNT----TPAQMKMFLTRL-GFGSKMV-VTGDIT 159 (208)
T ss_dssp ECSGGGC----CHHHHHHHHTTB-CTTCEEE-EEEC--
T ss_pred EeCCccc----cHHHHHHHHHHh-cCCCEEE-EECCHH
Confidence 9999999 899999999998 6799999 999975
No 67
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.94 E-value=5.9e-27 Score=243.15 Aligned_cols=83 Identities=30% Similarity=0.423 Sum_probs=76.4
Q ss_pred CCCccCHHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccE
Q 010509 184 LTRGVSGGERKRVSIGQEIL------INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia~aL~------~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~ 257 (508)
.+.+|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|++++++|.|||++|||++ . ...+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~-~-~~~~d~ 353 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDRE-F-SEAFDR 353 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHH-H-HTTCSC
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchH-H-HHhCCE
Confidence 35689999999999999999 699999999999999999999999999999888999999999986 3 577999
Q ss_pred EEEEeCCeEEE
Q 010509 258 VLLLSEGYPLY 268 (508)
Q Consensus 258 v~lL~~G~iv~ 268 (508)
+++|++|+++.
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999874
No 68
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.93 E-value=1.9e-26 Score=235.13 Aligned_cols=88 Identities=18% Similarity=0.204 Sum_probs=73.3
Q ss_pred CCccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEE--
Q 010509 185 TRGVSGGERKRVSIGQEIL----INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKV-- 258 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~----~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v-- 258 (508)
+..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|++++ +|.|||++||++. +...+|++
T Consensus 217 ~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~-~~~~vi~~tH~~~--~~~~~d~~~~ 293 (322)
T 1e69_A 217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS-KHTQFIVITHNKI--VMEAADLLHG 293 (322)
T ss_dssp GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT-TTSEEEEECCCTT--GGGGCSEEEE
T ss_pred hhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc-CCCeEEEEECCHH--HHhhCceEEE
Confidence 4589999999999999997 5789999999999999999999999999985 5899999999964 56789987
Q ss_pred EEEeCCeE-EEEcChhhH
Q 010509 259 LLLSEGYP-LYSGEASGA 275 (508)
Q Consensus 259 ~lL~~G~i-v~~G~~~~~ 275 (508)
++|.+|+. +...+.+++
T Consensus 294 v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 294 VTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp EEESSSCEEEEECCC---
T ss_pred EEEeCCEEEEEEEEcchh
Confidence 77887754 455555553
No 69
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.93 E-value=3.8e-27 Score=218.66 Aligned_cols=145 Identities=14% Similarity=0.156 Sum_probs=101.9
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHh
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALL 148 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l 148 (508)
||||++++||+++|+||||||||||+|++.+- ...+++. .. .++++|++.- ..+.+..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~------~~~~~~d----~~---~g~~~~~~~~---~~~~~~~------ 58 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKP------TEVISSD----FC---RGLMSDDEND---QTVTGAA------ 58 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCG------GGEEEHH----HH---HHHHCSSTTC---GGGHHHH------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccC------CeEEccH----HH---HHHhcCcccc---hhhHHHH------
Confidence 68999999999999999999999999996531 1112111 11 2566776421 1111100
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-------
Q 010509 149 QLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDST------- 221 (508)
Q Consensus 149 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~------- 221 (508)
.+......+ .....|.....+.. ...|||||||++||++++.+|++++|||||++||+.
T Consensus 59 -------~~~~~~~~~-~~~~~g~~~~~~~~------~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~ 124 (171)
T 4gp7_A 59 -------FDVLHYIVS-KRLQLGKLTVVDAT------NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDR 124 (171)
T ss_dssp -------HHHHHHHHH-HHHHTTCCEEEESC------CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSC
T ss_pred -------HHHHHHHHH-HHHhCCCeEEEECC------CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCC
Confidence 001111111 22234555444432 246999999999999999999999999999999999
Q ss_pred ---------HHHHHHHHHHHHHcCCCEEEEEecCcch
Q 010509 222 ---------IAQQILSILLKLANGGRTIVMTIHQPSN 249 (508)
Q Consensus 222 ---------~~~~i~~~L~~l~~~g~tii~s~H~~~~ 249 (508)
.+.++.+.|++++++|.|+|++||+++.
T Consensus 125 ~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~ 161 (171)
T 4gp7_A 125 QVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEE 161 (171)
T ss_dssp CCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHH
T ss_pred CCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHH
Confidence 5688999999988779999999999863
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.93 E-value=5.5e-29 Score=261.43 Aligned_cols=176 Identities=13% Similarity=0.133 Sum_probs=141.6
Q ss_pred ceeeeceEEEEeCCe--------------------EEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccE
Q 010509 64 KAILKGITGMVKPGE--------------------MLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNT 123 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge--------------------~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i 123 (508)
+.+|+|||+++++|+ ++||+||||||||||+|+|+|+.+|++|+|.++|.+.+ + .
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t---~--~ 110 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT---M--E 110 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-------C--C
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc---e--e
Confidence 568999999999999 99999999999999999999999999999999998753 2 2
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHH--HHHHHHHHHH
Q 010509 124 GFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGG--ERKRVSIGQE 201 (508)
Q Consensus 124 ~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGG--erqRv~Ia~a 201 (508)
+|++|++ .++.+|+.|++.+.. + +.+++++++.+++.+.. ..+ .+||| ||||+.||++
T Consensus 111 ~~v~q~~-~~~~ltv~D~~g~~~----~--------~~~~~~~L~~~~L~~~~-~~~------~lS~G~~~kqrv~la~a 170 (413)
T 1tq4_A 111 RHPYKHP-NIPNVVFWDLPGIGS----T--------NFPPDTYLEKMKFYEYD-FFI------IISATRFKKNDIDIAKA 170 (413)
T ss_dssp CEEEECS-SCTTEEEEECCCGGG----S--------SCCHHHHHHHTTGGGCS-EEE------EEESSCCCHHHHHHHHH
T ss_pred EEecccc-ccCCeeehHhhcccc----h--------HHHHHHHHHHcCCCccC-CeE------EeCCCCccHHHHHHHHH
Confidence 7899985 577889998875431 1 12467889999987653 222 39999 9999999999
Q ss_pred Hhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHH-----cC----CCEEEEEecCcch-HHHhhccEEE-E
Q 010509 202 ILI----------NPSLLFLDEPTSGLDSTIAQQILSILLKLA-----NG----GRTIVMTIHQPSN-MLYYMFHKVL-L 260 (508)
Q Consensus 202 L~~----------~P~illLDEPtsgLD~~~~~~i~~~L~~l~-----~~----g~tii~s~H~~~~-~~~~~~D~v~-l 260 (508)
|+. +|++++|||||+|||+.++.++++.++++. +. ..+|++++|+.+. .+.+++|++. .
T Consensus 171 L~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~ 250 (413)
T 1tq4_A 171 ISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISD 250 (413)
T ss_dssp HHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHH
T ss_pred HHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHh
Confidence 999 999999999999999999999999999984 32 3678999998763 2566677653 3
Q ss_pred EeCC
Q 010509 261 LSEG 264 (508)
Q Consensus 261 L~~G 264 (508)
|.+|
T Consensus 251 Lpeg 254 (413)
T 1tq4_A 251 LPIY 254 (413)
T ss_dssp SCGG
T ss_pred Cccc
Confidence 4444
No 71
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.91 E-value=4.2e-29 Score=238.49 Aligned_cols=180 Identities=16% Similarity=0.151 Sum_probs=124.3
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
.+.+++| .++++||+++|+||||||||||+|+|+|+++...+.+.+.+.+.....++.++|++|++.+++.+|+.|++
T Consensus 8 ~~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l 85 (207)
T 1znw_A 8 TKPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGEL 85 (207)
T ss_dssp -------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred CCcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCc
Confidence 4568888 79999999999999999999999999998853333322222222222356799999998888888887776
Q ss_pred HHHHHh----cCCCCCCHHHHHHHHHHH------HHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEe
Q 010509 143 VFTALL----QLPNSFTEKEKIKCAEAV------MTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLD 212 (508)
Q Consensus 143 ~~~~~l----~~~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLD 212 (508)
...... .. ...++++.++++++. ++.+|+.+.+++.+ +.|| +|+.+|++++||
T Consensus 86 ~~~~~~~~n~~~-~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~-----~~lS-----------~l~~~p~~~~LD 148 (207)
T 1znw_A 86 LEWAEIHGGLHR-SGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP-----EAVT-----------VFLAPPSWQDLQ 148 (207)
T ss_dssp EEEEEEGGGTEE-EEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT-----TSEE-----------EEEECSCHHHHH
T ss_pred eeehhhcCchhh-cCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC-----CcEE-----------EEEECCCHHHHH
Confidence 321100 10 022344555666665 66666666666554 3677 899999999999
Q ss_pred CCCCCC----CHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 213 EPTSGL----DSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 213 EPtsgL----D~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
|||+|+ |+..+.++.+.++++++ .|.|+|++|||++ ++.++|||+++|.
T Consensus 149 ep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~-~~~~~~d~i~~l~ 202 (207)
T 1znw_A 149 ARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLE-SACAELVSLLVGT 202 (207)
T ss_dssp HHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHH-HHHHHHHHHHC--
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHH-HHHHHHHHHHHhc
Confidence 999998 78899999999999975 5899999999986 5788999999985
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.91 E-value=1.3e-25 Score=210.27 Aligned_cols=144 Identities=19% Similarity=0.173 Sum_probs=102.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF 154 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~ 154 (508)
.++|+||||||||||+|+|+|+++ |.++|.+... ..++.+||++|+. ++.+++ + +... .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~----~ 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT------EGKKKI-F-SSKF----F 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET------TCCEEE-E-EETT----C
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC------cHHHHH-H-Hhhc----C
Confidence 589999999999999999999874 4455543311 3456799999975 222332 1 1110 0
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHHH
Q 010509 155 TEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQE-----ILINPSLLFLDE--PTSGLDSTIAQQIL 227 (508)
Q Consensus 155 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~a-----L~~~P~illLDE--PtsgLD~~~~~~i~ 227 (508)
. -.+..++. +..||||||||++||++ |+.+|++++||| ||++||+.....+.
T Consensus 65 ~----------------~~~~~~~~-----~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~ 123 (178)
T 1ye8_A 65 T----------------SKKLVGSY-----GVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVR 123 (178)
T ss_dssp C----------------CSSEETTE-----EECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHH
T ss_pred C----------------cccccccc-----ccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHH
Confidence 0 00223333 34899999999999996 999999999999 99999999999998
Q ss_pred HHHHHHHcCCCEEEEEec---CcchHHHhhccEEEEEeCCeEEE
Q 010509 228 SILLKLANGGRTIVMTIH---QPSNMLYYMFHKVLLLSEGYPLY 268 (508)
Q Consensus 228 ~~L~~l~~~g~tii~s~H---~~~~~~~~~~D~v~lL~~G~iv~ 268 (508)
+.+++ .+.|+|+++| +. ..+..++|| .+|+++.
T Consensus 124 ~~l~~---~~~~~i~~~H~~h~~-~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 124 QIMHD---PNVNVVATIPIRDVH-PLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHTC---TTSEEEEECCSSCCS-HHHHHHHTC----TTCEEEE
T ss_pred HHHhc---CCCeEEEEEccCCCc-hHHHHHHhc----CCcEEEE
Confidence 88865 4777888886 54 467788887 5567664
No 73
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.90 E-value=1.9e-25 Score=225.96 Aligned_cols=173 Identities=16% Similarity=0.143 Sum_probs=137.6
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--------hc--cccEEEEecCCC-CCCC
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--------QM--TRNTGFVTQEDV-LSPY 135 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--------~~--~~~i~yv~Q~~~-l~~~ 135 (508)
++++|+++++|++++|+||||||||||++.|+|+++|.+|+|.++|.+..+ .+ ++.++|++|++. ++|.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 457899999999999999999999999999999998899999999988742 12 346999999988 8899
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCC--EEEEeC
Q 010509 136 LTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPS--LLFLDE 213 (508)
Q Consensus 136 lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~--illLDE 213 (508)
+|++|++.++... ... ..+++.+|+.+..+++++ +|| |||++||++|+.+|+ +|+||
T Consensus 170 ~~v~e~l~~~~~~----~~d--------~~lldt~gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD- 228 (302)
T 3b9q_A 170 TVLSKAVKRGKEE----GYD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD- 228 (302)
T ss_dssp HHHHHHHHHHHHT----TCS--------EEEECCCCCSSCCHHHHH-----HHH---HHHHHHHTTSTTCCSEEEEEEE-
T ss_pred HHHHHHHHHHHHc----CCc--------chHHhcCCCCcchhHHHH-----HHH---HHHHHHHHhhccCCCeeEEEEe-
Confidence 9999999876421 110 135677888877776664 899 999999999999999 99999
Q ss_pred CCCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcc--------hHHHhhccEEEEEeCCeE
Q 010509 214 PTSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPS--------NMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 214 PtsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~--------~~~~~~~D~v~lL~~G~i 266 (508)
||+|||+..+ ++++.+ .|.|+|++||... +......+.|..+..|+.
T Consensus 229 ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 229 GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 9999998865 345543 5899999999322 234456678888888864
No 74
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.89 E-value=2.3e-27 Score=239.83 Aligned_cols=168 Identities=17% Similarity=0.207 Sum_probs=129.3
Q ss_pred EEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh
Q 010509 39 LKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ 118 (508)
Q Consensus 39 l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~ 118 (508)
|+++||++.+. +.+|+|+|+++++||+++|+||||||||||+++|+|++ +|+|.
T Consensus 102 i~~~~vs~~y~--------------~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~--------- 155 (305)
T 2v9p_A 102 FNYQNIELITF--------------INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL--------- 155 (305)
T ss_dssp HHHTTCCHHHH--------------HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE---------
T ss_pred EEEEEEEEEcC--------------hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE---------
Confidence 66677766542 45899999999999999999999999999999999987 78883
Q ss_pred ccccEEEEecCCCCCCCCCHHH-HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHH
Q 010509 119 MTRNTGFVTQEDVLSPYLTVTE-TMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVS 197 (508)
Q Consensus 119 ~~~~i~yv~Q~~~l~~~lTv~E-~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~ 197 (508)
+|++|++.+++. |++| |+.+.. ..++ .+.+.++.+ |.+..| | ..||||||||
T Consensus 156 -----~~v~q~~~lf~~-ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld---g----~~LSgGqkQR-- 208 (305)
T 2v9p_A 156 -----SFANHKSHFWLA-SLADTRAALVD------DATH-----ACWRYFDTY-LRNALD---G----YPVSIDRKHK-- 208 (305)
T ss_dssp -----CGGGTTSGGGGG-GGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG---T----CCEECCCSSC--
T ss_pred -----EEecCccccccc-cHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC---c----cCcCHHHHHH--
Confidence 467788777764 7776 665531 1121 344555554 444444 3 4899999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHH
Q 010509 198 IGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMN 277 (508)
Q Consensus 198 Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~ 277 (508)
||||+.+|+||| ||+||+.+...+.. .+|+++ ....+|++ +|++|++++.|+.++...
T Consensus 209 -ARAll~~p~iLl----Ts~LD~~~~~~i~~--------------ltH~~~--~~~~aD~i-vl~~G~iv~~g~~~el~~ 266 (305)
T 2v9p_A 209 -AAVQIKAPPLLV----TSNIDVQAEDRYLY--------------LHSRVQ--TFRFEQPC-TDESGEQPFNITDADWKS 266 (305)
T ss_dssp -CCCEECCCCEEE----EESSCSTTCGGGGG--------------GTTTEE--EEECCCCC-CCC---CCCCCCHHHHHH
T ss_pred -HHHHhCCCCEEE----ECCCCHHHHHHHHH--------------HhCCHH--HHHhCCEE-EEeCCEEEEeCCHHHHHH
Confidence 999999999999 99999999888862 189886 34789999 999999999999999877
Q ss_pred HHHh
Q 010509 278 YFAS 281 (508)
Q Consensus 278 ~f~~ 281 (508)
+|.+
T Consensus 267 ~y~~ 270 (305)
T 2v9p_A 267 FFVR 270 (305)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 75
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.89 E-value=3e-25 Score=221.12 Aligned_cols=147 Identities=19% Similarity=0.179 Sum_probs=99.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHH
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEK 157 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~ 157 (508)
.++|+||||||||||+|+|+|+..|++|+|.++|+++.. ..++.++|++|++.+++.+||.||+.|+..... ...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~--~~~-- 79 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN--ENC-- 79 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC--TTC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc--HHH--
Confidence 479999999999999999999999999999999998754 345679999999999999999999988753321 111
Q ss_pred HHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCC
Q 010509 158 EKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGG 237 (508)
Q Consensus 158 ~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g 237 (508)
.+.+.+.++ .+..+... .+||||||||+++||+++. ++++|||+.|||+.. .+.++++++.
T Consensus 80 --~~~i~~~~~----~~~~~~~~-----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L~~~- 140 (270)
T 3sop_A 80 --WEPIEKYIN----EQYEKFLK-----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHLSKV- 140 (270)
T ss_dssp --SHHHHHHHH----HHHHHHHH-----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHHHTT-
T ss_pred --HHHHHHHHH----HHHHhhhH-----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHHHhc-
Confidence 122333333 33444444 3899999999999999876 999999999999987 5666677666
Q ss_pred CEEEEEecCcc
Q 010509 238 RTIVMTIHQPS 248 (508)
Q Consensus 238 ~tii~s~H~~~ 248 (508)
.+||+++|..+
T Consensus 141 ~~vI~Vi~K~D 151 (270)
T 3sop_A 141 VNIIPVIAKAD 151 (270)
T ss_dssp SEEEEEETTGG
T ss_pred CcEEEEEeccc
Confidence 89999998753
No 76
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.88 E-value=5.9e-26 Score=240.67 Aligned_cols=191 Identities=13% Similarity=0.099 Sum_probs=150.8
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCE---e
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK---P 114 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~---~ 114 (508)
.++++|+++.+. .+.++|+++ +.+.+||+++|+||||||||||+++|+|+.++++|.|.++|+ +
T Consensus 131 ~l~~~~v~~~~~------------tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~e 197 (438)
T 2dpy_A 131 PLQRTPIEHVLD------------TGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGRE 197 (438)
T ss_dssp TTTSCCCCSBCC------------CSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHH
T ss_pred ceEEeccceecC------------CCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHH
Confidence 456666665542 135699999 999999999999999999999999999999999999999998 4
Q ss_pred CCh---------hccccEEEEecC-CCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 010509 115 FSN---------QMTRNTGFVTQE-DVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPL 184 (508)
Q Consensus 115 ~~~---------~~~~~i~yv~Q~-~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 184 (508)
+.. ..++.++|++|+ +.+++.+|+.+|+.+.+..... ..+ ......|.
T Consensus 198 v~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~-------~~~---------~v~~~ld~------ 255 (438)
T 2dpy_A 198 VKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD-------RGQ---------HVLLIMDS------ 255 (438)
T ss_dssp HHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT-------TTC---------EEEEEEEC------
T ss_pred HHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh-------CCC---------CHHHHHHh------
Confidence 422 245779999995 5567788999998876542100 000 01111121
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc---C-CC-----EEEEEecCcchHHHhhc
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN---G-GR-----TIVMTIHQPSNMLYYMF 255 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~---~-g~-----tii~s~H~~~~~~~~~~ 255 (508)
...+|+|| ||++|| +.+|++ |+|||+.+...+.+.++++.+ + |. ||++++||++ ...+
T Consensus 256 l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~---~~ia 322 (438)
T 2dpy_A 256 LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ---DPIA 322 (438)
T ss_dssp HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC---CHHH
T ss_pred HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc---chhh
Confidence 24799999 999999 889988 999999999999999999876 3 74 9999999997 3678
Q ss_pred cEEEEEeCCeEEEEcChhhHH
Q 010509 256 HKVLLLSEGYPLYSGEASGAM 276 (508)
Q Consensus 256 D~v~lL~~G~iv~~G~~~~~~ 276 (508)
|++++|.+|+++..|++.+..
T Consensus 323 d~v~~l~dG~Ivl~~~~~~~~ 343 (438)
T 2dpy_A 323 DSARAILDGHIVLSRRLAEAG 343 (438)
T ss_dssp HHHHHHSSEEEEECHHHHHTT
T ss_pred ceEEEEeCcEEEEeCCHHHcc
Confidence 999999999999999876653
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.88 E-value=1.6e-24 Score=223.81 Aligned_cols=172 Identities=16% Similarity=0.150 Sum_probs=138.1
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--------hc--cccEEEEecCCC-CCCCC
Q 010509 68 KGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--------QM--TRNTGFVTQEDV-LSPYL 136 (508)
Q Consensus 68 ~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--------~~--~~~i~yv~Q~~~-l~~~l 136 (508)
+++|+++++|++++|+||||||||||++.|+|++++.+|+|.++|.++.+ .+ ++.++|++|++. ++|.+
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 46889999999999999999999999999999998889999999988742 11 347999999988 88999
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCC--EEEEeCC
Q 010509 137 TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPS--LLFLDEP 214 (508)
Q Consensus 137 Tv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~--illLDEP 214 (508)
|++|++.++... ... ..+++.+|+.+..+.++. +|| |||++||++|+.+|+ +|+|| |
T Consensus 228 tv~e~l~~~~~~----~~d--------~~lldt~Gl~~~~~~~~~-----eLS---kqr~~iaral~~~P~e~lLvLD-p 286 (359)
T 2og2_A 228 VLSKAVKRGKEE----GYD--------VVLCDTSGRLHTNYSLME-----ELI---ACKKAVGKIVSGAPNEILLVLD-G 286 (359)
T ss_dssp HHHHHHHHHHHT----TCS--------EEEEECCCCSSCCHHHHH-----HHH---HHHHHHHHHSTTCCSEEEEEEE-G
T ss_pred hHHHHHHHHHhC----CCH--------HHHHHhcCCChhhhhHHH-----HHH---HHHHHHHHHHhcCCCceEEEEc-C
Confidence 999999876421 110 135667888877776664 899 999999999999999 99999 9
Q ss_pred CCCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcc--------hHHHhhccEEEEEeCCeE
Q 010509 215 TSGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPS--------NMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 215 tsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~--------~~~~~~~D~v~lL~~G~i 266 (508)
|+|||+.++. +++.+ .|.|+|++||.-. +......+.|..+..|+.
T Consensus 287 ttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 287 NTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp GGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 9999988653 44543 5899999999311 234456678888888864
No 78
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.87 E-value=6.4e-24 Score=217.39 Aligned_cols=131 Identities=18% Similarity=0.217 Sum_probs=108.7
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--hccccEEEEecCCCCCCCCCHHHHHH
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--QMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
+++++|+.+++|++++|+||||||||||+++|+|+++|++|.|.++|.+... ..++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~---------------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFF---------------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEEC----------------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEe----------------
Confidence 7899999999999999999999999999999999999999999999864211 1222333332
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIA 223 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~ 223 (508)
+ |||+||++||++|..+|++|++||||+
T Consensus 224 -------------------------------------------g--gg~~~r~~la~aL~~~p~ilildE~~~------- 251 (330)
T 2pt7_A 224 -------------------------------------------G--GNITSADCLKSCLRMRPDRIILGELRS------- 251 (330)
T ss_dssp -------------------------------------------B--TTBCHHHHHHHHTTSCCSEEEECCCCS-------
T ss_pred -------------------------------------------C--CChhHHHHHHHHhhhCCCEEEEcCCCh-------
Confidence 1 899999999999999999999999998
Q ss_pred HHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeE
Q 010509 224 QQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 224 ~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~i 266 (508)
.++.+.|+.+...+.|+|+++|+++ ..+.+||+++|.+|+.
T Consensus 252 ~e~~~~l~~~~~g~~tvi~t~H~~~--~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 252 SEAYDFYNVLCSGHKGTLTTLHAGS--SEEAFIRLANMSSSNS 292 (330)
T ss_dssp THHHHHHHHHHTTCCCEEEEEECSS--HHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHhcCCCEEEEEEcccH--HHHHhhhheehhcCCc
Confidence 2456778777654568999999987 5578999999998853
No 79
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.86 E-value=3.2e-22 Score=227.68 Aligned_cols=163 Identities=21% Similarity=0.330 Sum_probs=127.4
Q ss_pred HHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCC-C--H--HHHHHHHHHHH
Q 010509 93 LLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF-T--E--KEKIKCAEAVM 167 (508)
Q Consensus 93 LL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~-~--~--~~~~~~v~~~l 167 (508)
...|..+++++..|+|.++|+++.. +..+|+.|++.|.....+.... . . .+..++..+.|
T Consensus 384 C~~C~g~rl~~~~~~V~i~G~~i~~---------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L 448 (916)
T 3pih_A 384 CSVCGGRRLNREALSVKINGLNIHE---------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEKRLEFL 448 (916)
T ss_dssp CTTTCSCCBCTTGGGEEETTEEHHH---------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHHHHHHH
T ss_pred chhcccccCChHhcCcEECCccHHH---------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHHHHHHH
Confidence 3455556778999999999998743 2346788888775443322110 0 0 01112345678
Q ss_pred HHcCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEe
Q 010509 168 TELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEILINPS--LLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTI 244 (508)
Q Consensus 168 ~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~--illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~ 244 (508)
+.+||.+. .++.++ +|||||||||.||++|+.+|+ +|+|||||+|||+.....+++.|++++++|.|||+++
T Consensus 449 ~~vgL~~l~l~r~~~-----~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 449 VDVGLEYLTLSRSAT-----TLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HTTTCTTCBTTSBGG-----GCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHcCCccccccCCcc-----cCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 88999764 466654 899999999999999999887 9999999999999999999999999988899999999
Q ss_pred cCcchHHHhhccEEEEE------eCCeEEEEcChhhHHH
Q 010509 245 HQPSNMLYYMFHKVLLL------SEGYPLYSGEASGAMN 277 (508)
Q Consensus 245 H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~~ 277 (508)
||+. .+ ..+|++++| ++|++++.|+++++.+
T Consensus 524 Hd~~-~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~ 560 (916)
T 3pih_A 524 HDEE-VI-RNADHIIDIGPGGGTNGGRVVFQGTVDELLK 560 (916)
T ss_dssp CCHH-HH-HTCSEEEEEESSSGGGCSEEEEEECHHHHHH
T ss_pred CCHH-HH-HhCCEEEEEcCCcccCCCEEEEeechhhhhc
Confidence 9985 45 459999999 8999999999988753
No 80
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.86 E-value=4.2e-23 Score=207.22 Aligned_cols=184 Identities=12% Similarity=0.116 Sum_probs=124.3
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCccc-EEEECCEeCCh-hccccEEEEecCCCCCCCCCHHHH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING-RITYNGKPFSN-QMTRNTGFVTQEDVLSPYLTVTET 141 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G-~I~~~G~~~~~-~~~~~i~yv~Q~~~l~~~lTv~E~ 141 (508)
..+|+++++.+++|++++|+||||||||||++.|+|...+.+| .|.+.+.+.+. ..++++..+.|+.. +++.++
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~----~~~~~~ 97 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEESVEETAEDLIGLHNRVR----LRQSDS 97 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSCHHHHHHHHHHHHTTCC----GGGCHH
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC----hhhccc
Confidence 4579999999999999999999999999999999999877767 67655443332 23333333333321 123334
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH-HHHHHHHHHHhhCCCEEEEeCCCC---C
Q 010509 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE-RKRVSIGQEILINPSLLFLDEPTS---G 217 (508)
Q Consensus 142 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe-rqRv~Ia~aL~~~P~illLDEPts---g 217 (508)
+.... + ++++..+.++++++..++. ..+ . +..+|.+| +||+. |+++..+|+++++||||+ +
T Consensus 98 l~~~~-~------~~~~~~~~~~~~l~~~~l~-i~~-~-----~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~ 162 (296)
T 1cr0_A 98 LKREI-I------ENGKFDQWFDELFGNDTFH-LYD-S-----FAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSA 162 (296)
T ss_dssp HHHHH-H------HHTHHHHHHHHHHSSSCEE-EEC-C-----CCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----
T ss_pred cccCC-C------CHHHHHHHHHHHhccCCEE-EEC-C-----CCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCC
Confidence 43221 1 1223334455555433331 111 1 23688998 67777 999999999999999999 5
Q ss_pred ---CCH-HHHHHHHHHHHHHHcC-CCEEEEEecCcc-h--------------------HHHhhccEEEEEeCCeE
Q 010509 218 ---LDS-TIAQQILSILLKLANG-GRTIVMTIHQPS-N--------------------MLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 218 ---LD~-~~~~~i~~~L~~l~~~-g~tii~s~H~~~-~--------------------~~~~~~D~v~lL~~G~i 266 (508)
+|. ....++++.|++++++ |.|||+++|+.. . .+.+.||+|++|++|+.
T Consensus 163 ~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 163 SGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 565 6778899999999865 999999999962 2 57789999999998864
No 81
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.86 E-value=6.4e-22 Score=204.49 Aligned_cols=85 Identities=19% Similarity=0.123 Sum_probs=76.8
Q ss_pred CCCC-ccCHHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHH
Q 010509 183 PLTR-GVSGGERKRVSIGQEIL---------INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLY 252 (508)
Q Consensus 183 ~~~~-~LSGGerqRv~Ia~aL~---------~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~ 252 (508)
..++ .+|||||||++||++|+ .+|+||||||||++||+..+..+++.|+++. .|+|++||. +.
T Consensus 260 ~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~---qt~i~~th~-~~--- 332 (359)
T 2o5v_A 260 FPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP---QAIVTGTEL-AP--- 332 (359)
T ss_dssp EEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS---EEEEEESSC-CT---
T ss_pred cchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC---cEEEEEEec-cc---
Confidence 3455 79999999999999999 8999999999999999999999999999874 699999994 42
Q ss_pred hhccEEEEEeCCeEEEEcChhhH
Q 010509 253 YMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 253 ~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
.+|++++|++|+++..|+++++
T Consensus 333 -~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 333 -GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp -TCSEEEEEETTEEEECCCTTTS
T ss_pred -cCCEEEEEECCEEEecCCHHHH
Confidence 7899999999999999998765
No 82
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.86 E-value=2.1e-26 Score=222.13 Aligned_cols=164 Identities=12% Similarity=0.050 Sum_probs=107.3
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-----hccccEEEEecCCCCCCCCCH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-----QMTRNTGFVTQEDVLSPYLTV 138 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-----~~~~~i~yv~Q~~~l~~~lTv 138 (508)
..-|+||||++++|++++|+||||||||||+++|+|+. | |+|.+ |.+... ..++.++|++|++.+++.++.
T Consensus 10 ~~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 10 HSSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp ------------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred cccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 45799999999999999999999999999999999988 5 99999 776522 234678999998766554321
Q ss_pred -HHHHHH---HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHH-----HHHHhhCCCEE
Q 010509 139 -TETMVF---TALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSI-----GQEILINPSLL 209 (508)
Q Consensus 139 -~E~l~~---~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I-----a~aL~~~P~il 209 (508)
.+++.+ ..... +.+. +.++++++...+. ..+ ..+|||||||++| +++++.+|+++
T Consensus 86 ~~~~l~~~~~~~~~~---g~~~----~~i~~~l~~~~~~-il~--------~~lsggq~qR~~i~~~~~~~~ll~~~~~~ 149 (218)
T 1z6g_A 86 NEDFLEYDNYANNFY---GTLK----SEYDKAKEQNKIC-LFE--------MNINGVKQLKKSTHIKNALYIFIKPPSTD 149 (218)
T ss_dssp TTCEEEEEEETTEEE---EEEH----HHHHHHHHTTCEE-EEE--------ECHHHHHHHTTCSSCCSCEEEEEECSCHH
T ss_pred ccchhhhhhcccccC---CCcH----HHHHHHHhCCCcE-EEE--------ecHHHHHHHHHHhcCCCcEEEEEeCcCHH
Confidence 111111 01100 1122 2356666653321 111 3799999999999 89999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHc-------CCCEEEEEecCc
Q 010509 210 FLDEPTSGLDSTIAQQILSILLKLAN-------GGRTIVMTIHQP 247 (508)
Q Consensus 210 lLDEPtsgLD~~~~~~i~~~L~~l~~-------~g~tii~s~H~~ 247 (508)
+|||||+++|..+...+.+.|+++.+ .+.+.|+++|++
T Consensus 150 ~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~ 194 (218)
T 1z6g_A 150 VLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDL 194 (218)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCH
Confidence 99999999999999999998887643 234445555554
No 83
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.86 E-value=6.6e-21 Score=195.58 Aligned_cols=80 Identities=28% Similarity=0.365 Sum_probs=70.8
Q ss_pred CCCccCHHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccE
Q 010509 184 LTRGVSGGERK------RVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 184 ~~~~LSGGerq------Rv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~ 257 (508)
.+..||||||| |+++|++|+.+|++|+|||||+|||+..+..+++.|+++.++|.|||++|||+. +...||+
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~--~~~~~d~ 322 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE--LKDAADH 322 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG--GGGGCSE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH--HHHhCCE
Confidence 34689999999 667778888899999999999999999999999999999877899999999953 5788999
Q ss_pred EEEEe--CCe
Q 010509 258 VLLLS--EGY 265 (508)
Q Consensus 258 v~lL~--~G~ 265 (508)
++.|. +|.
T Consensus 323 ~~~l~~~~g~ 332 (339)
T 3qkt_A 323 VIRISLENGS 332 (339)
T ss_dssp EEEEEEETTE
T ss_pred EEEEEecCCc
Confidence 99986 453
No 84
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.85 E-value=2.9e-23 Score=203.16 Aligned_cols=181 Identities=9% Similarity=0.051 Sum_probs=113.5
Q ss_pred ccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHH
Q 010509 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET 141 (508)
Q Consensus 62 ~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 141 (508)
+++++|+|+||++++|+++||.||||||||||+++|+|++ |.+.++ ..++.++|++|++ +++.+|+.|+
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~------~~~~~i~~v~~d~-~~~~l~~~~~ 78 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE------QRQRKVVILSQDR-FYKVLTAEQK 78 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC------GGGCSEEEEEGGG-GBCCCCHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc------ccCCceEEEeCCc-CccccCHhHh
Confidence 3577999999999999999999999999999999999976 444443 2467799999995 7778999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 010509 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDST 221 (508)
Q Consensus 142 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~ 221 (508)
+.+....... ..+.....+.+.+.++.+ .+..+..+ ..+|+||+||+.+ ++++.+|+++++|||....|..
T Consensus 79 ~~~~~~~~~~-~~~~~~~~~~~~~~L~~l--~~~~~~~~-----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~ 149 (245)
T 2jeo_A 79 AKALKGQYNF-DHPDAFDNDLMHRTLKNI--VEGKTVEV-----PTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE 149 (245)
T ss_dssp HHHHTTCCCT-TSGGGBCHHHHHHHHHHH--HTTCCEEE-----CCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred hhhhccCCCC-CCcccccHHHHHHHHHHH--HCCCCeec-----ccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence 8765432110 001111123344455543 34444444 4899999999988 5788899999999998888863
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHHHHH
Q 010509 222 IAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFA 280 (508)
Q Consensus 222 ~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 280 (508)
+.++ .+.+|++++|+.......+++++ ++|+ +.+++.+.+.
T Consensus 150 --------l~~~--~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~~~ 190 (245)
T 2jeo_A 150 --------IRDM--FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQYT 190 (245)
T ss_dssp --------HHTT--CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHHHH
T ss_pred --------HHHh--cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHHHH
Confidence 2222 37899999997433333444444 5664 5666665443
No 85
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.85 E-value=1.5e-23 Score=215.92 Aligned_cols=192 Identities=14% Similarity=0.149 Sum_probs=139.2
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..++.+++++.+.. +..+|+++ +.+.+||+++|+||||||||||+++|+|...++.|.|.+.|++..
T Consensus 44 ~~i~~~~l~~~~~t------------g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ 110 (347)
T 2obl_A 44 DPLLRQVIDQPFIL------------GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGR 110 (347)
T ss_dssp CSTTCCCCCSEECC------------SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHH
T ss_pred CCeeecccceecCC------------CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHH
Confidence 34667777766541 35699999 999999999999999999999999999999999999999997521
Q ss_pred h-----------hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCC
Q 010509 117 N-----------QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLT 185 (508)
Q Consensus 117 ~-----------~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~ 185 (508)
+ .+++.+.++.|.+. ...+.+..... .....+.....+ .+... .. ..+
T Consensus 111 ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl~-~l--d~~ 169 (347)
T 2obl_A 111 EVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFT------------ATTIAEYFRDQG-KNVLL-MM--DSV 169 (347)
T ss_dssp HHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEEE-EE--ETH
T ss_pred HHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHHH-HH--hhH
Confidence 1 13445788887542 22232221100 000111111111 11110 00 123
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc--CCC-----EEEEEecCcchHHHhhccEE
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLAN--GGR-----TIVMTIHQPSNMLYYMFHKV 258 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~--~g~-----tii~s~H~~~~~~~~~~D~v 258 (508)
..+|+|| ||+++| +.+|++ |+|||+....++.++++++.+ .|. ||++++||++ ..++|++
T Consensus 170 ~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~---~~i~d~v 236 (347)
T 2obl_A 170 TRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN---DPIGDEV 236 (347)
T ss_dssp HHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---CHHHHHH
T ss_pred HHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---Chhhhhe
Confidence 4899999 899999 688887 999999999999999999975 487 9999999997 3569999
Q ss_pred EEEeCCeEEEEcChhhH
Q 010509 259 LLLSEGYPLYSGEASGA 275 (508)
Q Consensus 259 ~lL~~G~iv~~G~~~~~ 275 (508)
.+|.+|+++.+|+.++.
T Consensus 237 ~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 237 RSILDGHIVLTRELAEE 253 (347)
T ss_dssp HHHCSEEEEBCHHHHTT
T ss_pred EEeeCcEEEEeCCHHHc
Confidence 99999999999987764
No 86
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.85 E-value=1.7e-24 Score=220.05 Aligned_cols=160 Identities=13% Similarity=0.108 Sum_probs=116.5
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNS 153 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~ 153 (508)
+++|+++||+||||||||||+++|+|+++|..|. +.++||+|++.+++. |++|++.+.... +
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-------------~~v~~v~qd~~~~~~-t~~e~~~~~~~~----g 148 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-------------PRVDLVTTDGFLYPN-AELQRRNLMHRK----G 148 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-------------CCEEEEEGGGGBCCH-HHHHHTTCTTCT----T
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC-------------CeEEEEecCccCCcc-cHHHHHHHHHhc----C
Confidence 7999999999999999999999999998876553 458999999999988 999998542211 1
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Q 010509 154 FTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKL 233 (508)
Q Consensus 154 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l 233 (508)
.+.....+++.+.++.++ .+..++.+ ..|||||+||+++|++++.+|+|||+|||++.+|+.. ..+
T Consensus 149 ~~~~~d~~~~~~~L~~l~-~~~~~~~~-----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l 214 (312)
T 3aez_A 149 FPESYNRRALMRFVTSVK-SGSDYACA-----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMV 214 (312)
T ss_dssp SGGGBCHHHHHHHHHHHH-TTCSCEEE-----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCG
T ss_pred CChHHHHHHHHHHHHHhC-CCcccCCc-----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHH
Confidence 222223456778888888 55444554 3899999999999999999999999999999998621 112
Q ss_pred HcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 234 ANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 234 ~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.+.=-..|+++|+.+.......+|.+.+.+|+
T Consensus 215 ~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 215 SDLFDFSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp GGGCSEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred HHhcCcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 22112345556665544445556655555543
No 87
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.84 E-value=2.5e-24 Score=233.53 Aligned_cols=167 Identities=17% Similarity=0.167 Sum_probs=123.6
Q ss_pred cceeeeceEE-EEeCCeEEEEECCCCCcHHHHHHH--HhcCCCCcccEEEECCEeCCh---hccccEEEEecCCCCCCCC
Q 010509 63 EKAILKGITG-MVKPGEMLAMLGPSGCGKTTLLTA--LGGRLGRINGRITYNGKPFSN---QMTRNTGFVTQEDVLSPYL 136 (508)
Q Consensus 63 ~~~iL~~vs~-~v~~Ge~~ailG~nGsGKSTLL~~--L~g~~~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l~~~l 136 (508)
+.++|+++|+ .+++||+++|+||||||||||+++ ++|+.+|.+|.|+++|++... ..++.+||++|+....++
T Consensus 24 g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g~~~q~~~~~~~- 102 (525)
T 1tf7_A 24 MIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFGWDLAKLVDEGK- 102 (525)
T ss_dssp CCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGTCCHHHHHHTTS-
T ss_pred CchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCChHHhhccCc-
Confidence 4678999999 999999999999999999999999 789988889999999988532 234578999997542211
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010509 137 TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS 216 (508)
Q Consensus 137 Tv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPts 216 (508)
+.+ ..... . +...++++.++|.+..++.+ +.||||| |+++++||||+
T Consensus 103 -----l~~---~~~~~--~-----~~~~~~l~~~~l~~~~~~~~-----~~LS~g~-------------~~~lilDe~t~ 149 (525)
T 1tf7_A 103 -----LFI---LDASP--D-----PEGQEVVGGFDLSALIERIN-----YAIQKYR-------------ARRVSIDSVTS 149 (525)
T ss_dssp -----EEE---EECCC--C-----SSCCSCCSSHHHHHHHHHHH-----HHHHHHT-------------CSEEEEECSTT
T ss_pred -----EEE---EecCc--c-----cchhhhhcccCHHHHHHHHH-----HHHHHcC-------------CCEEEECCHHH
Confidence 100 01000 0 00112233344444444333 2566664 78999999998
Q ss_pred -----CCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchH--------HHhhccEEEEEeC
Q 010509 217 -----GLDSTIAQQILSILLKLANGGRTIVMTIHQPSNM--------LYYMFHKVLLLSE 263 (508)
Q Consensus 217 -----gLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~--------~~~~~D~v~lL~~ 263 (508)
+||+..+.++.++++++++.|+|||+++|+++.. ...+||+|++|++
T Consensus 150 ~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 150 VFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp TSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred HHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 5699999999999999988899999999999753 4566999999998
No 88
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.84 E-value=3e-21 Score=209.00 Aligned_cols=77 Identities=22% Similarity=0.346 Sum_probs=70.6
Q ss_pred CCcc-CHHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 185 TRGV-SGGERKRVSIGQEILINP--SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 185 ~~~L-SGGerqRv~Ia~aL~~~P--~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
+..| ||||||||+||++|+.+| ++|+|||||+|||+.++..+.+.|+++++ |+|||++||++. .+ ..||++++|
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~-~~~vi~itH~~~-~~-~~~d~~~~~ 470 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD-TRQVLVVTHLAQ-IA-ARAHHHYKV 470 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH-HSEEEEECCCHH-HH-HHSSEEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC-CCEEEEEecCHH-HH-HhCCEEEEE
Confidence 4567 999999999999999999 99999999999999999999999999987 899999999986 34 569999999
Q ss_pred eCC
Q 010509 262 SEG 264 (508)
Q Consensus 262 ~~G 264 (508)
++|
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 554
No 89
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.83 E-value=1.4e-20 Score=213.28 Aligned_cols=134 Identities=22% Similarity=0.364 Sum_probs=111.4
Q ss_pred CCCHHHHHHHHHHhcCCCC---CCH---HHHHHHHHHHHHHcCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHhhCC-
Q 010509 135 YLTVTETMVFTALLQLPNS---FTE---KEKIKCAEAVMTELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEILINP- 206 (508)
Q Consensus 135 ~lTv~E~l~~~~~l~~~~~---~~~---~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P- 206 (508)
.+||.|.+.|...+.++.. ..+ ++..+++ +.|+.+||... .|+.++ +|||||||||.||++|..+|
T Consensus 451 ~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~-----tLSGGEkQRV~LA~aL~~~~~ 524 (972)
T 2r6f_A 451 AMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLT 524 (972)
T ss_dssp TSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGG-----GCCHHHHHHHHHHHHHTTCCC
T ss_pred hCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccc-----cCCHHHHHHHHHHHHHhhCCC
Confidence 5899999999776644320 000 2344555 45899999865 576665 99999999999999999985
Q ss_pred -CEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhhHH
Q 010509 207 -SLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGAM 276 (508)
Q Consensus 207 -~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~ 276 (508)
++|+|||||+|||+.....+++.|++|++.|.|||+++|++. .+ ..||+|++| ++|++++.|+++++.
T Consensus 525 ~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~i-~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~ 599 (972)
T 2r6f_A 525 GVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDED-TM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 599 (972)
T ss_dssp SCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-HH-HSCSEEEEECSSSGGGCCSEEEEECTTTTT
T ss_pred CCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH-HH-HhCCEEEEeCCCccCCCCEEEEecCHHHHH
Confidence 999999999999999999999999999988999999999985 44 579999999 799999999998764
No 90
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.83 E-value=4.4e-21 Score=208.04 Aligned_cols=156 Identities=14% Similarity=0.106 Sum_probs=120.8
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcC
Q 010509 71 TGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQL 150 (508)
Q Consensus 71 s~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~ 150 (508)
++.+++|++++|+||||||||||+++++|...+. |+ +.+.|++|++. .++.++.. +.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-------------~vi~~~~ee~~----~~l~~~~~-----~~ 331 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-------------RAILFAYEESR----AQLLRNAY-----SW 331 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-------------CEEEEESSSCH----HHHHHHHH-----TT
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-------------CEEEEEEeCCH----HHHHHHHH-----Hc
Confidence 5689999999999999999999999999987553 43 12456667641 12222221 11
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH-----HHHH
Q 010509 151 PNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDST-----IAQQ 225 (508)
Q Consensus 151 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~-----~~~~ 225 (508)
..+. ++ +...|+.+..+.. +..|||||+||+.+|+++..+|+++++| ||+|||.. .+..
T Consensus 332 --g~~~-------~~-~~~~g~~~~~~~~-----p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~ 395 (525)
T 1tf7_A 332 --GMDF-------EE-MERQNLLKIVCAY-----PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQF 395 (525)
T ss_dssp --SCCH-------HH-HHHTTSEEECCCC-----GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHH
T ss_pred --CCCH-------HH-HHhCCCEEEEEec-----cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHH
Confidence 1221 12 2345666655544 4589999999999999999999999999 99999999 9999
Q ss_pred HHHHHHHHHcCCCEEEEEecCcc---------hHHHhhccEEEEEeCCe
Q 010509 226 ILSILLKLANGGRTIVMTIHQPS---------NMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 226 i~~~L~~l~~~g~tii~s~H~~~---------~~~~~~~D~v~lL~~G~ 265 (508)
+.++++.+++.|.|||+++|+.. ..+..++|++++|++|+
T Consensus 396 i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 396 VIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999999888999999999981 34678899999999886
No 91
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.83 E-value=5.2e-22 Score=229.20 Aligned_cols=172 Identities=19% Similarity=0.137 Sum_probs=120.8
Q ss_pred eEEEEe-----EEEEEeccccccCcccccccceeeeceEEEEeC-------CeEEEEECCCCCcHHHHHHHHhcCCCCcc
Q 010509 38 TLKFED-----IVYKIKMKKGFYGSNKKIEEKAILKGITGMVKP-------GEMLAMLGPSGCGKTTLLTALGGRLGRIN 105 (508)
Q Consensus 38 ~l~~~~-----l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~-------Ge~~ailG~nGsGKSTLL~~L~g~~~~~~ 105 (508)
.|+++| |++.+. +++.+++|+++.+++ |++++|+||||||||||||++ |++.+
T Consensus 750 ~l~i~~~rHP~l~~~~~------------~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~-- 814 (1022)
T 2o8b_B 750 FLELKGSRHPCITKTFF------------GDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV-- 814 (1022)
T ss_dssp CEEEEEECCCC------------------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--
T ss_pred eEEEEeccccEEEEEec------------CCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--
Confidence 488888 776652 135799999999987 999999999999999999999 88642
Q ss_pred cEEEECCEeCChhccccEE-EEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC
Q 010509 106 GRITYNGKPFSNQMTRNTG-FVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPL 184 (508)
Q Consensus 106 G~I~~~G~~~~~~~~~~i~-yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~ 184 (508)
..++| ||||+.. .+||.|++.. + +|+.+.....
T Consensus 815 --------------~aqiG~~Vpq~~~---~l~v~d~I~~----r--------------------ig~~d~~~~~----- 848 (1022)
T 2o8b_B 815 --------------MAQMGCYVPAEVC---RLTPIDRVFT----R--------------------LGASDRIMSG----- 848 (1022)
T ss_dssp --------------HHTTTCCEESSEE---EECCCSBEEE----E--------------------CC-------------
T ss_pred --------------HhheeEEeccCcC---CCCHHHHHHH----H--------------------cCCHHHHhhc-----
Confidence 12345 9999753 4555554411 1 1222111111
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEEEEEe
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIA-QQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~-~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
...+|+++++ +++|++++++|+++|||||++|+|+... ..++++|+.++++ |.++|++||+++ .+...+|++.++
T Consensus 849 ~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~e-l~~~~~d~~~v~- 925 (1022)
T 2o8b_B 849 ESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHS-LVEDYSQNVAVR- 925 (1022)
T ss_dssp -CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHH-HHHHTSSCSSEE-
T ss_pred hhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHH-HHHHhCCcceee-
Confidence 1357777664 9999999999999999999999999985 5578999999876 999999999986 566789998887
Q ss_pred CCeEE--EEcChh
Q 010509 263 EGYPL--YSGEAS 273 (508)
Q Consensus 263 ~G~iv--~~G~~~ 273 (508)
+|++. +.|+++
T Consensus 926 ~g~~~~~~~~~~~ 938 (1022)
T 2o8b_B 926 LGHMACMVENECE 938 (1022)
T ss_dssp EEEEEEC------
T ss_pred cCeEEEEEecCcc
Confidence 58887 556544
No 92
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.82 E-value=1.1e-20 Score=213.47 Aligned_cols=169 Identities=21% Similarity=0.270 Sum_probs=129.0
Q ss_pred CCCCcHHHHHHHHhc---------CCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhc------
Q 010509 85 PSGCGKTTLLTALGG---------RLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQ------ 149 (508)
Q Consensus 85 ~nGsGKSTLL~~L~g---------~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~------ 149 (508)
.+..||+||.+.+.. ++.+..|+|.++|+++.+.. .+++.|.+.|.....
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~---------------~~~v~e~~~~~~~~~~~~~~~ 334 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELS---------------RLPLARVSELLRPYAEEREPG 334 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHH---------------HSBHHHHHHHHHHHHTTCSSC
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHh---------------hcCHHHHHHHHHhhhhhhhhc
Confidence 355689999998876 34578899999999875411 123333333322210
Q ss_pred ------CCCCC------CHHHHHHHHHHHHHHcCCCcc-cccccCCCCCCccCHHHHHHHHHHHHHhhCC--CEEEEeCC
Q 010509 150 ------LPNSF------TEKEKIKCAEAVMTELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQEILINP--SLLFLDEP 214 (508)
Q Consensus 150 ------~~~~~------~~~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P--~illLDEP 214 (508)
+.... -.++..++++ .++.+||.+. .++.+. +|||||||||.||++|..+| .+|+||||
T Consensus 335 ~~~~~~~~~~~~~i~~~i~~ei~~rl~-~L~~vGL~~l~l~r~~~-----tLSGGe~QRV~LA~aL~~~p~~~llILDEP 408 (842)
T 2vf7_A 335 HAERVKNRPEQAIALQRMAADLVKRLD-VLLHLGLGYLGLDRSTP-----TLSPGELQRLRLATQLYSNLFGVVYVLDEP 408 (842)
T ss_dssp STTSSSSCSSHHHHHHHHHHHHHHHHH-HHHHTTCTTSBTTCBGG-----GSCHHHHHHHHHHHHTTTCCCSCEEEEECT
T ss_pred ccchhhcchhhHHHHHHHHHHHHHHHH-HHHhCCCCcCCccCCcC-----cCCHHHHHHHHHHHHHhhCCCCeEEEeeCc
Confidence 00000 0234455666 6889999865 566654 99999999999999999999 59999999
Q ss_pred CCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChhhHH
Q 010509 215 TSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEASGAM 276 (508)
Q Consensus 215 tsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~~~~ 276 (508)
|+|||+.....++++|++|++.|.|||+++|++. . ...+|+|++| ++|++++.|++++..
T Consensus 409 T~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~-~-l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 409 SAGLHPADTEALLSALENLKRGGNSLFVVEHDLD-V-IRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp TTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHH-H-HTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred cccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHH-H-HHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 9999999999999999999988999999999985 3 4679999999 799999999998754
No 93
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.82 E-value=8.7e-22 Score=191.15 Aligned_cols=163 Identities=16% Similarity=0.095 Sum_probs=106.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHh--cCCCCcccEEEECCEeCCh---hccccEEEEecCCCCCCCCCHHHHHHHHH
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALG--GRLGRINGRITYNGKPFSN---QMTRNTGFVTQEDVLSPYLTVTETMVFTA 146 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~--g~~~~~~G~I~~~G~~~~~---~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~ 146 (508)
+-+++||+++|+||||||||||+++|+ |...+.+|.+.+++..... ...+.++|++|+....+.+++.++.....
T Consensus 25 Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 104 (251)
T 2ehv_A 25 GGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERARDLRREMASFGWDFEKYEKEGKIAIVDGVSSVV 104 (251)
T ss_dssp TSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHHTTTCCHHHHHHTTSEEEEC------
T ss_pred CCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHHcCCChHHHhhcCCEEEEEcccccc
Confidence 479999999999999999999999999 6545567778887765432 22345677777654444445444322110
Q ss_pred HhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCC-----HH
Q 010509 147 LLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLD-----ST 221 (508)
Q Consensus 147 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD-----~~ 221 (508)
.. ........+ ...+-++..+...+..-..+|+++++||||++|| +.
T Consensus 105 ~~----------~~~~~~~~~------------------~~~~~~~~~~~~~~~l~~~~p~~lilDep~~~ld~~~d~~~ 156 (251)
T 2ehv_A 105 GL----------PSEEKFVLE------------------DRFNVDNFLRYIYRVVKAINAKRLVIDSIPSIALRLEEERK 156 (251)
T ss_dssp -----------------------------------------CCHHHHHHHHHHHHHHTTCSEEEEECHHHHHHHSSSGGG
T ss_pred cc----------ccccceecc------------------CcccHHHHHHHHHHHHHhhCCCEEEEccHHHHHhhcCCHHH
Confidence 00 000000000 1223444444444444468999999999999998 67
Q ss_pred HHHHHHHHHHHHHcCCCEEEEEecCcchHH--------Hhhc-cEEEEEe
Q 010509 222 IAQQILSILLKLANGGRTIVMTIHQPSNML--------YYMF-HKVLLLS 262 (508)
Q Consensus 222 ~~~~i~~~L~~l~~~g~tii~s~H~~~~~~--------~~~~-D~v~lL~ 262 (508)
.+..+.++++.+++.|+|||+++|++.... ..+| |++++|+
T Consensus 157 ~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 157 IREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 777799999999888999999999987531 5778 9999995
No 94
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.81 E-value=3.2e-20 Score=212.01 Aligned_cols=152 Identities=16% Similarity=0.138 Sum_probs=112.8
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh--------cCCCCcccEEEECCEeCChhccccEEEEecCCCCCC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG--------GRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSP 134 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~--------g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~ 134 (508)
.+.+++|+++.+++|++++|+||||||||||||+++ |..-|.++.. ++.+ +
T Consensus 648 ~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~--------------~~~~---d---- 706 (934)
T 3thx_A 648 IAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE--------------VSIV---D---- 706 (934)
T ss_dssp CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------------EECC---S----
T ss_pred ceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------------chHH---H----
Confidence 467999999999999999999999999999999994 3322221110 1100 0
Q ss_pred CCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHH--hhCCCEEEEe
Q 010509 135 YLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEI--LINPSLLFLD 212 (508)
Q Consensus 135 ~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL--~~~P~illLD 212 (508)
+++..+|+.+. . .+++|+|++++..+|+++ +++|+++|||
T Consensus 707 ------------------------------~i~~~ig~~d~---l-----~~~lStf~~e~~~~a~il~~a~~~sLlLLD 748 (934)
T 3thx_A 707 ------------------------------CILARVGAGDS---Q-----LKGVSTFMAEMLETASILRSATKDSLIIID 748 (934)
T ss_dssp ------------------------------EEEEECC-----------------CHHHHHHHHHHHHHHHCCTTCEEEEE
T ss_pred ------------------------------HHHHhcCchhh---H-----HHhHhhhHHHHHHHHHHHHhccCCcEEEEe
Confidence 01111222211 1 136888888888888888 9999999999
Q ss_pred CCCCCCCHHHHHHH-HHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 213 EPTSGLDSTIAQQI-LSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 213 EPtsgLD~~~~~~i-~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
|||+|||+.....+ ..+++.+++ .|.|+|++||+.+ +..++|++..+.+|++...++.+++
T Consensus 749 Ep~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~e--l~~lad~~~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 749 ELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHE--LTALANQIPTVNNLHVTALTTEETL 811 (934)
T ss_dssp SCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGG--GGGGGGTCTTEEEEEEEEEEETTEE
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHH--HHHHhcccceeEeeEEEEEecCCcE
Confidence 99999999999888 677788876 4999999999964 5688999999999999988877654
No 95
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.81 E-value=4e-21 Score=190.40 Aligned_cols=132 Identities=17% Similarity=0.295 Sum_probs=100.2
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc-ccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI-NGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~-~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++....+...++++|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~-------------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR-------------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEE--------------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHH--------------
Confidence 4899999 9999999999999999999999999999887 9999999877532111112222221
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIA 223 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~ 223 (508)
.+|+.. ..+ |++||++|..+|+++++|||| |+.+.
T Consensus 79 -------------------------~~gl~~-----------~~l------~~~la~aL~~~p~illlDEp~---D~~~~ 113 (261)
T 2eyu_A 79 -------------------------EVGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLETV 113 (261)
T ss_dssp -------------------------EBTTTB-----------SCH------HHHHHHHHHHCCSEEEESCCC---SHHHH
T ss_pred -------------------------HhCCCH-----------HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHH
Confidence 122221 123 899999999999999999999 98886
Q ss_pred HHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 224 QQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 224 ~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
..++ +. ++.|.+|++++|+.+ ....+||++.|..
T Consensus 114 ~~~l---~~-~~~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 114 ETAL---RA-AETGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp HHHH---HH-HHTTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred HHHH---HH-HccCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 6544 33 356999999999976 4577898877753
No 96
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.80 E-value=1.3e-19 Score=206.10 Aligned_cols=133 Identities=22% Similarity=0.305 Sum_probs=111.0
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCH----------HHHHHHHHHHHHHcCCCcc-cccccCCCCCCccCHHHHHHHHHHHH
Q 010509 133 SPYLTVTETMVFTALLQLPNSFTE----------KEKIKCAEAVMTELGLSEC-KNSLIGGPLTRGVSGGERKRVSIGQE 201 (508)
Q Consensus 133 ~~~lTv~E~l~~~~~l~~~~~~~~----------~~~~~~v~~~l~~lgL~~~-~~~~vg~~~~~~LSGGerqRv~Ia~a 201 (508)
+..+||.|.+.|...+.+ +. ++..+++ +.|+.+||... .++.++ +|||||||||.||++
T Consensus 466 ~~~ltV~e~l~f~enl~l----~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~-----tLSGGEkQRV~LA~a 535 (993)
T 2ygr_A 466 VCELSIADCADFLNALTL----GPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAA-----TLSGGEAQRIRLATQ 535 (993)
T ss_dssp SSHHHHHHHHHTTTTTTS----CHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGG-----GCCHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhcCC----CHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcc-----cCCHHHHHHHHHHHH
Confidence 445899999998654433 33 2334455 35788999865 566664 999999999999999
Q ss_pred HhhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE------eCCeEEEEcChh
Q 010509 202 ILIN--PSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL------SEGYPLYSGEAS 273 (508)
Q Consensus 202 L~~~--P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL------~~G~iv~~G~~~ 273 (508)
|..+ |++|+|||||+|||+.....+++.|++|++.|.|||+++||+. .+ ..+|+|++| ++|++++.|+++
T Consensus 536 L~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~-~i-~~ADrIi~Lgp~aG~~gG~iv~~G~~~ 613 (993)
T 2ygr_A 536 IGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDED-TI-EHADWIVDIGPGAGEHGGRIVHSGPYD 613 (993)
T ss_dssp HTTCCCSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHH-HH-HTCSEEEEECSSSGGGCCSCCEEECHH
T ss_pred HhhCCCCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHH-HH-HhCCEEEEecCccccCCCEEEEeeCHH
Confidence 9999 5899999999999999999999999999988999999999985 44 579999999 799999999998
Q ss_pred hHHH
Q 010509 274 GAMN 277 (508)
Q Consensus 274 ~~~~ 277 (508)
++..
T Consensus 614 e~~~ 617 (993)
T 2ygr_A 614 ELLR 617 (993)
T ss_dssp HHHH
T ss_pred Hhhh
Confidence 7754
No 97
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.79 E-value=1.1e-20 Score=181.15 Aligned_cols=150 Identities=21% Similarity=0.200 Sum_probs=95.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-------cccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHH
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-------INGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVF 144 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-------~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 144 (508)
+-+++||+++|+||||||||||+++|+|...+ ..|.+.+++.+... .+.+++++|+..+.+. |+.||+.+
T Consensus 20 ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~~--~~~i~~~~~~~~~~~~-~~~~~~~~ 96 (231)
T 4a74_A 20 GGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFR--PERIREIAQNRGLDPD-EVLKHIYV 96 (231)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCC--HHHHHHHHHHTTSCHH-HHHHTEEE
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCCC--HHHHHHHHHHcCCCHH-HHhhcEEE
Confidence 57999999999999999999999999995433 23366666543210 1123333443333222 33333211
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH-HHHHHHHHHHhh-------CCCEEEEeCCCC
Q 010509 145 TALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE-RKRVSIGQEILI-------NPSLLFLDEPTS 216 (508)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe-rqRv~Ia~aL~~-------~P~illLDEPts 216 (508)
. +..++++ ++++..+.+++. +|+++++||||+
T Consensus 97 ~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 136 (231)
T 4a74_A 97 A----------------------------------------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTS 136 (231)
T ss_dssp E----------------------------------------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSH
T ss_pred E----------------------------------------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHH
Confidence 1 1223333 333555555555 899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHHHc-CCCEEEEEecCcch---HHHhhccEEEEEeCC
Q 010509 217 GLDST-------I-----AQQILSILLKLAN-GGRTIVMTIHQPSN---MLYYMFHKVLLLSEG 264 (508)
Q Consensus 217 gLD~~-------~-----~~~i~~~L~~l~~-~g~tii~s~H~~~~---~~~~~~D~v~lL~~G 264 (508)
++|+. . ..++++.|+++++ .|.|||+++|+... .+.+.+|+++.|++|
T Consensus 137 ~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 137 HFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 99984 2 2378888888865 49999999995432 367889999999875
No 98
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.78 E-value=1.1e-21 Score=198.33 Aligned_cols=155 Identities=17% Similarity=0.153 Sum_probs=88.2
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC-CCCcccEEEECCEeCChh-ccccEEEEecCCCCCCCCCHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR-LGRINGRITYNGKPFSNQ-MTRNTGFVTQEDVLSPYLTVTE 140 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~-~~~~~G~I~~~G~~~~~~-~~~~i~yv~Q~~~l~~~lTv~E 140 (508)
++.++++++++| +|+||||+|||||++.|+|. ..+.+| |.++|.++... ..+.+++++|++.....+|+.|
T Consensus 10 ~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~D 82 (301)
T 2qnr_A 10 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGVKLRLTVVD 82 (301)
T ss_dssp --------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---CCEEEEEEE
T ss_pred CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCcccCcchhh
Confidence 578999999998 99999999999999999997 788899 88888876432 2356899999988888899999
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCC
Q 010509 141 TMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS-GLD 219 (508)
Q Consensus 141 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPts-gLD 219 (508)
+..++.... ..+..+..++.+. +..+..+ +++|||||||+.+|++++ ++++||||+ |||
T Consensus 83 t~g~~~~~~-----~~e~~~~l~~~l~------~~~~~~~-----~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld 142 (301)
T 2qnr_A 83 TPGYGDAIN-----CRDCFKTIISYID------EQFERYL-----HDESGLNRRHIIDNRVHC----CFYFISPFGHGLK 142 (301)
T ss_dssp EC----------------CTTHHHHHH------HHHHHHH-----HHHTSSCCTTCCCCCCCE----EEEEECSSSSSCC
T ss_pred hhhhhhhcC-----cHHHHHHHHHHHH------HHHHHHH-----HHhCHHhhhhhhhhhhhh----eeeeecCcccCCC
Confidence 887753221 0011111122221 2233444 489999999999988875 999999998 599
Q ss_pred HHHHHHHHHHHHHHHcC-CCEEEEEecCcc
Q 010509 220 STIAQQILSILLKLANG-GRTIVMTIHQPS 248 (508)
Q Consensus 220 ~~~~~~i~~~L~~l~~~-g~tii~s~H~~~ 248 (508)
+... +.++++.++ +.++|++.||+.
T Consensus 143 ~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 143 PLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 9873 566666554 789999999975
No 99
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.78 E-value=7.7e-19 Score=159.39 Aligned_cols=81 Identities=25% Similarity=0.333 Sum_probs=72.6
Q ss_pred CCCccCHHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccE
Q 010509 184 LTRGVSGGERKRVSIG------QEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 184 ~~~~LSGGerqRv~Ia------~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~ 257 (508)
.+.+||||||||++|| ++|+.+|++++|||||+|||+.++..+.+.|+++.++|+|||++||++ . +...+|+
T Consensus 54 ~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~-~-~~~~~d~ 131 (148)
T 1f2t_B 54 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDE-E-LKDAADH 131 (148)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCG-G-GGGGCSE
T ss_pred ChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChH-H-HHHhCCE
Confidence 4569999999999886 899999999999999999999999999999999987799999999997 3 5689999
Q ss_pred EEEE--eCCeE
Q 010509 258 VLLL--SEGYP 266 (508)
Q Consensus 258 v~lL--~~G~i 266 (508)
+++| .+|..
T Consensus 132 ii~l~~~~g~s 142 (148)
T 1f2t_B 132 VIRISLENGSS 142 (148)
T ss_dssp EEEEEEETTEE
T ss_pred EEEEEcCCCeE
Confidence 9999 45643
No 100
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.77 E-value=4.7e-22 Score=189.22 Aligned_cols=146 Identities=15% Similarity=0.163 Sum_probs=115.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCC--CCCCHHHHHHHHHHhcCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLS--PYLTVTETMVFTALLQLP 151 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~--~~lTv~E~l~~~~~l~~~ 151 (508)
.++|++++|+||||||||||+++|+|++++ .++|++|++.++ +.+|+.++..+.. ..+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~--~~~ 62 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE------------------RVALLPMDHYYKDLGHLPLEERLRVNY--DHP 62 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT--TSG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC------------------CeEEEecCccccCcccccHHHhcCCCC--CCh
Confidence 578999999999999999999999998753 489999998776 5689988865432 111
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHH----HHHHHHHHHhhCCCEEEEeCCCCC-------CCH
Q 010509 152 NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGER----KRVSIGQEILINPSLLFLDEPTSG-------LDS 220 (508)
Q Consensus 152 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGer----qRv~Ia~aL~~~P~illLDEPtsg-------LD~ 220 (508)
. ....+++.+.++.+++.+..+... ..+|+||| ||+++|++++.+|+++++||||++ ||+
T Consensus 63 ~----~~~~~~~~~~l~~~~~~~~~~~~~-----~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~ 133 (211)
T 3asz_A 63 D----AFDLALYLEHAQALLRGLPVEMPV-----YDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDA 133 (211)
T ss_dssp G----GBCHHHHHHHHHHHHTTCCEEECC-----EETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEEC
T ss_pred h----hhhHHHHHHHHHHHHcCCCcCCCc-----ccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeC
Confidence 1 112345677788888877665543 47999964 788999999999999999999999 999
Q ss_pred HHHHHHHHHHHHH-HcCCCEEEEEecCcc
Q 010509 221 TIAQQILSILLKL-ANGGRTIVMTIHQPS 248 (508)
Q Consensus 221 ~~~~~i~~~L~~l-~~~g~tii~s~H~~~ 248 (508)
....++.+.+++. .++|+|++.++|+..
T Consensus 134 ~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 134 DADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp CHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999886 456999999999753
No 101
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.77 E-value=2.9e-20 Score=211.87 Aligned_cols=144 Identities=12% Similarity=0.075 Sum_probs=100.2
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC-CCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL-GRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET 141 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~-~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 141 (508)
++.|++|+|+++++|++++|+||||||||||||++++.. ....|. .+... -+.+..-+.++..+.
T Consensus 659 ~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~------~vpa~----~~~i~~~d~i~~~ig---- 724 (918)
T 3thx_B 659 DQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGS------YVPAE----EATIGIVDGIFTRMG---- 724 (918)
T ss_dssp SSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTC------CBSSS----EEEEECCSEEEEEC-----
T ss_pred CceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCc------cccch----hhhhhHHHHHHHhCC----
Confidence 467999999999999999999999999999999998643 111111 01000 011111111222121
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 010509 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDST 221 (508)
Q Consensus 142 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~ 221 (508)
+.+..... ...+|+||+|++.|+++ +++|+++||||||+|||+.
T Consensus 725 ------------------------------~~d~l~~~-----~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~ 768 (918)
T 3thx_B 725 ------------------------------AADNIYKG-----RSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTH 768 (918)
T ss_dssp --------------------------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHH
T ss_pred ------------------------------hHHHHHHh-----HHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHH
Confidence 11111111 13789999999999998 8999999999999999999
Q ss_pred HHHHHH-HHHHHHHc-CCCEEEEEecCcchHHHhhccEE
Q 010509 222 IAQQIL-SILLKLAN-GGRTIVMTIHQPSNMLYYMFHKV 258 (508)
Q Consensus 222 ~~~~i~-~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v 258 (508)
....+. .+++.+++ .|.|+|++||+++ +..++|+.
T Consensus 769 ~~~~i~~~il~~L~~~~g~tvl~vTH~~e--l~~l~~~~ 805 (918)
T 3thx_B 769 DGIAIAYATLEYFIRDVKSLTLFVTHYPP--VCELEKNY 805 (918)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEEeCcHH--HHHHHhhc
Confidence 999997 77888865 5999999999975 34556643
No 102
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.77 E-value=6.4e-20 Score=205.99 Aligned_cols=128 Identities=16% Similarity=0.164 Sum_probs=100.6
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC-CCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL-GRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET 141 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~-~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 141 (508)
++.+++|+|++ |++++|+||||||||||||+|+|+. .+..|.+. .. .+..+++++| +++.+++.|+
T Consensus 565 ~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v------pa-~~~~i~~v~~---i~~~~~~~d~ 631 (765)
T 1ewq_A 565 TEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV------PA-EEAHLPLFDG---IYTRIGASDD 631 (765)
T ss_dssp SCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB------SS-SEEEECCCSE---EEEECCC---
T ss_pred CceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee------eh-hccceeeHHH---hhccCCHHHH
Confidence 46799999999 9999999999999999999999976 35667642 11 2345777766 4555555554
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHH--hhCCCEEEEeCC---CC
Q 010509 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEI--LINPSLLFLDEP---TS 216 (508)
Q Consensus 142 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL--~~~P~illLDEP---ts 216 (508)
+. .++|+|+++++.+++++ +++|+++||||| |+
T Consensus 632 l~------------------------------------------~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs 669 (765)
T 1ewq_A 632 LA------------------------------------------GGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTS 669 (765)
T ss_dssp ---------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSC
T ss_pred HH------------------------------------------hcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCC
Confidence 31 15799999999999999 999999999999 99
Q ss_pred CCCHHHH-HHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 217 GLDSTIA-QQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 217 gLD~~~~-~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
+||..+. ..+++.|++ .|.|+|++||+.+
T Consensus 670 ~lD~~~~~~~i~~~L~~---~g~~vl~~TH~~~ 699 (765)
T 1ewq_A 670 SLDGVAIATAVAEALHE---RRAYTLFATHYFE 699 (765)
T ss_dssp HHHHHHHHHHHHHHHHH---HTCEEEEECCCHH
T ss_pred CcCHHHHHHHHHHHHHh---CCCEEEEEeCCHH
Confidence 9999875 578888876 4899999999964
No 103
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.76 E-value=2.8e-20 Score=188.18 Aligned_cols=148 Identities=15% Similarity=0.168 Sum_probs=110.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--------hc--cccEEEEecCCCCCCCCCHHHHHHHH
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--------QM--TRNTGFVTQEDVLSPYLTVTETMVFT 145 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--------~~--~~~i~yv~Q~~~l~~~lTv~E~l~~~ 145 (508)
+|++++|+||||||||||+++|+|+++|++|+|.++|.++.. .+ ++.++|++|++.+.|.+|++|++.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 799999999999999999999999999999999999998632 11 34699999999989989999998765
Q ss_pred HHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 010509 146 ALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQ 225 (508)
Q Consensus 146 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~ 225 (508)
.... .. ..+++..|+.+..+. -++..++||++|||+++.+|+.++| .||+.+..+
T Consensus 181 ~~~~----~d--------~~llDt~G~~~~~~~--------~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~ 235 (304)
T 1rj9_A 181 KARG----YD--------LLFVDTAGRLHTKHN--------LMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQN 235 (304)
T ss_dssp HHHT----CS--------EEEECCCCCCTTCHH--------HHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTH
T ss_pred HhCC----CC--------EEEecCCCCCCchHH--------HHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHH
Confidence 3211 00 012333444433222 2455569999999999999994444 455555556
Q ss_pred HHHHHHHHHcC-CCEEEEEecCcc
Q 010509 226 ILSILLKLANG-GRTIVMTIHQPS 248 (508)
Q Consensus 226 i~~~L~~l~~~-g~tii~s~H~~~ 248 (508)
+++.++++.+. |.|+|++||+..
T Consensus 236 ~~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 236 GLEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHHHcCCcEEEEECCcc
Confidence 77777777654 899999999853
No 104
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.75 E-value=6.4e-18 Score=178.65 Aligned_cols=75 Identities=17% Similarity=0.218 Sum_probs=68.5
Q ss_pred CccCHHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 186 RGVSGGERKRVSIGQEIL----INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~----~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
..||||||||++||++|+ .+|++++|||||++||+..+..+.+.|+++.++|.++|++||++ .....||+++.+
T Consensus 332 ~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 332 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred ccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCH--HHHHhCCEEEEE
Confidence 459999999999999999 57999999999999999999999999999876689999999995 356789999999
Q ss_pred e
Q 010509 262 S 262 (508)
Q Consensus 262 ~ 262 (508)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
No 105
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.74 E-value=1e-20 Score=208.50 Aligned_cols=194 Identities=14% Similarity=0.150 Sum_probs=119.7
Q ss_pred eeEEEEeEEEEEeccccccCcccccccceeeece----------EEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC-cc
Q 010509 37 VTLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGI----------TGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR-IN 105 (508)
Q Consensus 37 ~~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~v----------s~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-~~ 105 (508)
..++++||+..+.... +++|+.+ +++++. ++|+|||||||||||++|+|+..| ++
T Consensus 9 ~~i~~~~l~~~~~~~~-----------r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~s 74 (608)
T 3szr_A 9 GSVAENNLCSQYEEKV-----------RPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGS 74 (608)
T ss_dssp -----------CHHHH-----------HHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-----
T ss_pred chhhhhhhhHHHHHHH-----------HHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCC
Confidence 3577889988875221 1222222 344544 999999999999999999999877 79
Q ss_pred cEEEECCEeCC-------hhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCccccc
Q 010509 106 GRITYNGKPFS-------NQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNS 178 (508)
Q Consensus 106 G~I~~~G~~~~-------~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 178 (508)
|.|+++|.++. ..+++.++|++|+..+++.+||+|++.++........ -++.
T Consensus 75 G~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~----------------~~~s----- 133 (608)
T 3szr_A 75 GIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGEG----------------MGIS----- 133 (608)
T ss_dssp --CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCSS----------------SCCC-----
T ss_pred CeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCCc----------------cccc-----
Confidence 99999998852 2456789999999999999999999987543210000 0111
Q ss_pred ccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHHHc--CCCEEEEEecCcchH
Q 010509 179 LIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEP------TSGLDSTIAQQILSILLKLAN--GGRTIVMTIHQPSNM 250 (508)
Q Consensus 179 ~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEP------tsgLD~~~~~~i~~~L~~l~~--~g~tii~s~H~~~~~ 250 (508)
++++.++.+...+|+++++||| |+|||+..+.++.++++++.+ .+.++++++|+.+..
T Consensus 134 --------------~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a 199 (608)
T 3szr_A 134 --------------HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIA 199 (608)
T ss_dssp --------------SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTT
T ss_pred --------------hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhc
Confidence 1111122222358999999999 999999999999999999753 378899999997521
Q ss_pred ------HHhh-----ccEEEEEeCCeEEEEcChhhHHHHH
Q 010509 251 ------LYYM-----FHKVLLLSEGYPLYSGEASGAMNYF 279 (508)
Q Consensus 251 ------~~~~-----~D~v~lL~~G~iv~~G~~~~~~~~f 279 (508)
+.+. ...|.+++++..+..|+.+++.+..
T Consensus 200 ~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~~l 239 (608)
T 3szr_A 200 TTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVDVV 239 (608)
T ss_dssp TCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCCCC
T ss_pred cHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHHHH
Confidence 1111 2458899999888888766555443
No 106
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.73 E-value=1.4e-19 Score=173.03 Aligned_cols=167 Identities=16% Similarity=0.104 Sum_probs=112.3
Q ss_pred ceeeeceEE-EEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh-hcc---ccEEEEecCCCCCCCCCH
Q 010509 64 KAILKGITG-MVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN-QMT---RNTGFVTQEDVLSPYLTV 138 (508)
Q Consensus 64 ~~iL~~vs~-~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~-~~~---~~i~yv~Q~~~l~~~lTv 138 (508)
.+.|+++.+ .+++|++++|+||||||||||++.|++...+.+|.|.+.+.+... ... +..++.+|+.... .+++
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 87 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDSIIRQAKQFNWDFEEYIEK-KLII 87 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHHHHHHHHHTTCCCGGGBTT-TEEE
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHHHHHHHHHhcchHHHHhhC-CEEE
Confidence 456888885 899999999999999999999999998776666777765543321 110 0112222110000 0000
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCC--EEEEeCCCC
Q 010509 139 TETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPS--LLFLDEPTS 216 (508)
Q Consensus 139 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~--illLDEPts 216 (508)
++...+.++ ...+ ....|.+|.++...+.....+|+ ++++||||+
T Consensus 88 ------------------------~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~ 134 (235)
T 2w0m_A 88 ------------------------IDALMKEKE-----DQWS----LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSA 134 (235)
T ss_dssp ------------------------EECCC---------CTTB----CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGG
T ss_pred ------------------------EeccccccC-----ceee----ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchH
Confidence 000000000 0001 12459999998888888888999 999999998
Q ss_pred CC--CHHHHHHHHHHHHHHHc-CCCEEEEEecCcc-------hHHHhhccEEEEEeCC
Q 010509 217 GL--DSTIAQQILSILLKLAN-GGRTIVMTIHQPS-------NMLYYMFHKVLLLSEG 264 (508)
Q Consensus 217 gL--D~~~~~~i~~~L~~l~~-~g~tii~s~H~~~-------~~~~~~~D~v~lL~~G 264 (508)
++ |+....++++.|+++++ .|.|||+++|+.. ..+.+.+|++++|++.
T Consensus 135 ~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 135 LFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 87 99999999999999975 5999999999983 2477889999999854
No 107
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.73 E-value=5.6e-19 Score=199.39 Aligned_cols=155 Identities=15% Similarity=0.030 Sum_probs=107.6
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-CcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHH
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-RINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET 141 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 141 (508)
++.+++|+|++ ++|++++|+||||||||||||+|+|... ...| ..+... +..++++.| +++.+++.|+
T Consensus 594 ~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G------~~vpa~-~~~i~~~~~---i~~~~~~~d~ 662 (800)
T 1wb9_A 594 EPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIG------SYVPAQ-KVEIGPIDR---IFTRVGAADD 662 (800)
T ss_dssp SCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTT------CCBSSS-EEEECCCCE---EEEEEC----
T ss_pred Cceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcC------cccchh-cccceeHHH---HHhhCCHHHH
Confidence 46799999999 9999999999999999999999999641 1222 112111 233555554 4555555555
Q ss_pred HHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 010509 142 MVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDST 221 (508)
Q Consensus 142 l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~ 221 (508)
+... + +.+|+++++ ++.+...+++|+++|||||++|+|+.
T Consensus 663 l~~~--------------------------~-------------stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~ 702 (800)
T 1wb9_A 663 LASG--------------------------R-------------STFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTY 702 (800)
T ss_dssp ----------------------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSS
T ss_pred HHhh--------------------------h-------------hhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChh
Confidence 4211 0 135666654 44455678999999999999999998
Q ss_pred HHHHH-HHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 222 IAQQI-LSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 222 ~~~~i-~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
....+ .++++.+++ .|.++|++||+++ +..++|++..+.+|++.+..
T Consensus 703 d~~~i~~~ll~~l~~~~g~~vl~~TH~~e--l~~l~d~~~~v~n~~~~~~~ 751 (800)
T 1wb9_A 703 DGLSLAWACAENLANKIKALTLFATHYFE--LTQLPEKMEGVANVHLDALE 751 (800)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECSCGG--GGGHHHHSTTEEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHhccCCeEEEEeCCHH--HHHHhhhhhceEEEEEEEEE
Confidence 88776 788888887 4999999999975 34678877666677665543
No 108
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.73 E-value=2.7e-20 Score=175.71 Aligned_cols=156 Identities=16% Similarity=0.158 Sum_probs=105.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF 154 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~ 154 (508)
|++++|+||||||||||+++|+|+++ ++| |.++|.+... ..++.+||++|+. .... +++ +.+..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~~---~~l---~~~~~---- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGTR---GPL---SRVGL---- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET--TSCE---EEE---EECCC----
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec--ccce---ehh---hcccc----
Confidence 78999999999999999999999988 899 9999987643 3567899999975 1211 111 11110
Q ss_pred CHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCHHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHHHH
Q 010509 155 TEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSGGERKRV-SIGQ---EILINPSLLFLDE--PTSGLDSTIAQQIL 227 (508)
Q Consensus 155 ~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv-~Ia~---aL~~~P~illLDE--PtsgLD~~~~~~i~ 227 (508)
+..+ ..+..+| .+...+|+|||+++ ++++ |+..+|+++++|| |+..+|......+.
T Consensus 67 ----------------~~~~~~~~~~v~-~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~ 129 (189)
T 2i3b_A 67 ----------------EPPPGKRECRVG-QYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVR 129 (189)
T ss_dssp ----------------CCCSSSCCEESS-SSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHH
T ss_pred ----------------cCCccccccccc-eEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHH
Confidence 0110 0111333 23347999999988 4444 5789999999999 89999987554444
Q ss_pred HHHHHHHcCCCEEEE----EecCcchHHHhhccEEEEEeCCeEEEEc
Q 010509 228 SILLKLANGGRTIVM----TIHQPSNMLYYMFHKVLLLSEGYPLYSG 270 (508)
Q Consensus 228 ~~L~~l~~~g~tii~----s~H~~~~~~~~~~D~v~lL~~G~iv~~G 270 (508)
+.+ ++..++|+ ++|+.+ ..+.|+|..+.+|+++.-.
T Consensus 130 ~~l----~~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 130 QTL----STPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHH----HCSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred HHH----hCCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 444 34445553 238864 2456777778888887643
No 109
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.72 E-value=1.3e-19 Score=186.72 Aligned_cols=163 Identities=20% Similarity=0.168 Sum_probs=103.9
Q ss_pred eeece-EEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--CCcc----cE-EEECCEeCChhccccEEEEecCCCCCCCCC
Q 010509 66 ILKGI-TGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--GRIN----GR-ITYNGKPFSNQMTRNTGFVTQEDVLSPYLT 137 (508)
Q Consensus 66 iL~~v-s~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--~~~~----G~-I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lT 137 (508)
.|+++ ++.+++|++++|+||||||||||++.|++.. +|++ |. |++++++.. .++++++++|...+++. +
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~i~~i~q~~~~~~~-~ 195 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-E 195 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHHHHHHHHTTTCCHH-H
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHHHHHHHHHcCCCHH-H
Confidence 45665 6899999999999999999999999999976 5666 67 888876541 12345666666544432 4
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh-------hCCCEEE
Q 010509 138 VTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL-------INPSLLF 210 (508)
Q Consensus 138 v~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~-------~~P~ill 210 (508)
+.||+.+.. .. -|.+++|++.++++++ .+|++++
T Consensus 196 v~~ni~~~~------~~---------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llI 236 (349)
T 1pzn_A 196 VLKHIYVAR------AF---------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLI 236 (349)
T ss_dssp HGGGEEEEE------CC---------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEE
T ss_pred HhhCEEEEe------cC---------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEE
Confidence 444432211 00 1345555555555555 6899999
Q ss_pred EeCCCCCCCHHH------------HHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcC
Q 010509 211 LDEPTSGLDSTI------------AQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 211 LDEPtsgLD~~~------------~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
+||||+++|+.. ..++++.|+++++ .|+|||+++|... .....++.......|+++.++.
T Consensus 237 lDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~-~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 237 VDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQA-RPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp EETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred EeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccccc-ccccccCCccccCCcceEeecC
Confidence 999999999852 4567777777765 5899999999865 3434455556666776654443
No 110
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.71 E-value=1.2e-19 Score=171.56 Aligned_cols=175 Identities=13% Similarity=0.073 Sum_probs=98.9
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC-----CCcccEEEECC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL-----GRINGRITYNG 112 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~-----~~~~G~I~~~G 112 (508)
.|+++|+++.++ ..++++ +.+++|+.++|+|+||||||||+|.|+|.. .|+.|++.+.+
T Consensus 3 ~l~~~~~~~~~~--------------~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~ 66 (210)
T 1pui_A 3 NLNYQQTHFVMS--------------APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN 66 (210)
T ss_dssp --------CEEE--------------ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEE
T ss_pred chhhhhhhheee--------------cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE
Confidence 378899998874 246777 889999999999999999999999999987 67778765432
Q ss_pred EeCChhccccEEEEecCCCCC----CCCC---HHHHHHHHHHh-c----------CCCCCCHHHHHHHHHHHHHHcCCCc
Q 010509 113 KPFSNQMTRNTGFVTQEDVLS----PYLT---VTETMVFTALL-Q----------LPNSFTEKEKIKCAEAVMTELGLSE 174 (508)
Q Consensus 113 ~~~~~~~~~~i~yv~Q~~~l~----~~lT---v~E~l~~~~~l-~----------~~~~~~~~~~~~~v~~~l~~lgL~~ 174 (508)
.-. .....-.+ +.+.+. +.-. .+..+...... + .....+. ..+.+.++++..++..
T Consensus 67 ~~~---~~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~~~ 140 (210)
T 1pui_A 67 LFE---VADGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNIAV 140 (210)
T ss_dssp EEE---EETTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTCCE
T ss_pred EEE---ecCCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCCCe
Confidence 110 00011111 111110 0000 11112111110 0 0011122 2234555667777764
Q ss_pred cc-ccccCCCCCCccCHHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCE
Q 010509 175 CK-NSLIGGPLTRGVSGGERKR-VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRT 239 (508)
Q Consensus 175 ~~-~~~vg~~~~~~LSGGerqR-v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~t 239 (508)
.. .+++ ..+|+||||| +..+++++.+|+++++|||||++|.....++++.|.++.++|.|
T Consensus 141 ~~v~nK~-----D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~~~ 202 (210)
T 1pui_A 141 LVLLTKA-----DKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSEMQP 202 (210)
T ss_dssp EEEEECG-----GGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC----
T ss_pred EEEEecc-----cCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhhccc
Confidence 32 3333 3689999999 89999999999999999999999999999999999998776644
No 111
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.70 E-value=2.4e-18 Score=177.66 Aligned_cols=127 Identities=21% Similarity=0.298 Sum_probs=91.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc-ccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI-NGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP 151 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~-~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~ 151 (508)
...+|++++|+|||||||||||++|+|.+++. +|.|...+.++....+...++++|.......+|.
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~------------- 185 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGF------------- 185 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCH-------------
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCH-------------
Confidence 67899999999999999999999999998776 5676554444322223334455554322111111
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 010509 152 NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILL 231 (508)
Q Consensus 152 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~ 231 (508)
.+ +||++|..+|++|++|||| |..+ ++.+.
T Consensus 186 ---------------------------------------~~----~La~aL~~~PdvillDEp~---d~e~----~~~~~ 215 (356)
T 3jvv_A 186 ---------------------------------------SE----ALRSALREDPDIILVGEMR---DLET----IRLAL 215 (356)
T ss_dssp ---------------------------------------HH----HHHHHTTSCCSEEEESCCC---SHHH----HHHHH
T ss_pred ---------------------------------------HH----HHHHHhhhCcCEEecCCCC---CHHH----HHHHH
Confidence 11 8999999999999999999 6555 44445
Q ss_pred HHHcCCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 232 KLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 232 ~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
++++.|+||++|+|+.+. . ..+||++.|..|
T Consensus 216 ~~~~~G~~vl~t~H~~~~-~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 216 TAAETGHLVFGTLHTTSA-A-KTIDRVVDVFPA 246 (356)
T ss_dssp HHHHTTCEEEEEESCSSH-H-HHHHHHHHTSCH
T ss_pred HHHhcCCEEEEEEccChH-H-HHHHHHhhhcCc
Confidence 556779999999999874 4 778999888654
No 112
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.70 E-value=2.2e-17 Score=164.26 Aligned_cols=151 Identities=18% Similarity=0.172 Sum_probs=106.7
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCC
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPN 152 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~ 152 (508)
-+++|++++|+||||||||||++.+++... .|++. .|.+... ...+.|+..++.. ..+.+.+. .+. .
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~--~~~v~~~~~e~~~---~~~~~r~~---~~g--~ 92 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP--TGPVIYLPAEDPP---TAIHHRLH---ALG--A 92 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC--CCCEEEEESSSCH---HHHHHHHH---HHH--T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC--CccEEEEECCCCH---HHHHHHHH---HHH--h
Confidence 488999999999999999999999998542 46553 3544321 3457888776532 01112221 111 1
Q ss_pred CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHHH---HHHH
Q 010509 153 SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS--GLDSTIA---QQIL 227 (508)
Q Consensus 153 ~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPts--gLD~~~~---~~i~ 227 (508)
.... ...+++++.+++.+..+..+ ..+|+||+|++ ++++.+|+++++||||+ ++|.... .+++
T Consensus 93 ~~~~----~~~~~~~~~l~l~~~~~~~~-----~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~ 160 (279)
T 1nlf_A 93 HLSA----EERQAVADGLLIQPLIGSLP-----NIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVI 160 (279)
T ss_dssp TSCH----HHHHHHHHHEEECCCTTSCC-----CTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHH
T ss_pred hcCh----hhhhhccCceEEeecCCCCc-----ccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHH
Confidence 1222 23566788888877665544 48999998875 68889999999999999 9998544 8888
Q ss_pred HHHHHHHc-CCCEEEEEecCcc
Q 010509 228 SILLKLAN-GGRTIVMTIHQPS 248 (508)
Q Consensus 228 ~~L~~l~~-~g~tii~s~H~~~ 248 (508)
+.|+++++ .|+|||+++|+..
T Consensus 161 ~~L~~l~~~~g~tvi~i~H~~~ 182 (279)
T 1nlf_A 161 GRMEAIAADTGCSIVFLHHASK 182 (279)
T ss_dssp HHHHHHHHHHCCEEEEEEEC--
T ss_pred HHHHHHHHHcCCEEEEEecCCC
Confidence 99999874 5999999999975
No 113
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.67 E-value=1.3e-18 Score=167.86 Aligned_cols=149 Identities=19% Similarity=0.172 Sum_probs=103.4
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC--cccEEEECCEeCChhccccEEEEecCCCCCCCCCH----HHHHHH
Q 010509 71 TGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR--INGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTV----TETMVF 144 (508)
Q Consensus 71 s~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~--~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv----~E~l~~ 144 (508)
.-..++|++++|+||||||||||+++|+|+.+| .+|.|.+++++.....++.++|++|++..++.+++ .|++.+
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~ 89 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEV 89 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHH
Confidence 345789999999999999999999999999875 78999999887654445678999997654443333 121111
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 010509 145 TALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQ 224 (508)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~ 224 (508)
. |+ ..+.| +++ +.+++..++++||| ||+.++.
T Consensus 90 ~-----------------------------------~~--~yg~~---~~~---v~~~l~~G~illLD-----LD~~~~~ 121 (219)
T 1s96_A 90 F-----------------------------------GN--YYGTS---REA---IEQVLATGVDVFLD-----IDWQGAQ 121 (219)
T ss_dssp T-----------------------------------TE--EEEEE---HHH---HHHHHTTTCEEEEE-----CCHHHHH
T ss_pred H-----------------------------------hc--cCCCC---HHH---HHHHHhcCCeEEEE-----ECHHHHH
Confidence 0 00 00111 222 34555668999999 9999999
Q ss_pred HHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHHHHHh
Q 010509 225 QILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFAS 281 (508)
Q Consensus 225 ~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~~f~~ 281 (508)
++.+.+. ++.||++++|+++. +.+ |+ +.+| .++++++...+..
T Consensus 122 ~i~~~l~----~~~tI~i~th~~~~-l~~---Rl--~~rG----~~~~e~i~~rl~~ 164 (219)
T 1s96_A 122 QIRQKMP----HARSIFILPPSKIE-LDR---RL--RGRG----QDSEEVIAKRMAQ 164 (219)
T ss_dssp HHHHHCT----TCEEEEEECSSHHH-HHH---HH--HTTS----CSCHHHHHHHHHH
T ss_pred HHHHHcc----CCEEEEEECCCHHH-HHH---HH--HHcC----CCCHHHHHHHHHH
Confidence 9999876 58999999999864 332 43 6778 6788887766653
No 114
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.67 E-value=1.5e-18 Score=182.71 Aligned_cols=162 Identities=15% Similarity=0.165 Sum_probs=98.3
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCccc--EEEECCEeC
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING--RITYNGKPF 115 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G--~I~~~G~~~ 115 (508)
.++++||++++. .+.+++|+||+| +|+||||||||||+|+|+|...+..| .+.+++.+
T Consensus 11 ~l~~~~l~~~y~-------------~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~- 70 (418)
T 2qag_C 11 YVGFANLPNQVY-------------RKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKK- 70 (418)
T ss_dssp ----CCCCCCTT-------------TTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC------
T ss_pred cEEEEecceeEC-------------CEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCcc-
Confidence 477888876643 467999999998 99999999999999999998764444 22222111
Q ss_pred ChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 116 SNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 116 ~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
....+.+++++|++.+++.+|+.||+.+..... ..+..+.+.+.++ ..++.+++||
T Consensus 71 -t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~------~~~~~~~i~~~i~-----------------~~~~~~l~qr 126 (418)
T 2qag_C 71 -TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVD------NSNCWQPVIDYID-----------------SKFEDYLNAE 126 (418)
T ss_dssp -CCEEEEEECC------CEEEEEEECC-----------------CHHHHHHHH-----------------HHHHHHTTTS
T ss_pred -ceeeeeEEEEEecCCcccceeeeechhhhhhcc------chhhHHHHHHHHH-----------------HHHHHHHHHH
Confidence 112356899999998888899999987754321 1111111222221 1467788899
Q ss_pred HHHHHHHhhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 196 VSIGQEILINPS---LLFLDEPT-SGLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 196 v~Ia~aL~~~P~---illLDEPt-sgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
++||++++.+|+ +|++|||| .|||+... +.++++.. +.+||+++|..+
T Consensus 127 ~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~-~v~iIlVinK~D 178 (418)
T 2qag_C 127 SRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE-KVNIIPLIAKAD 178 (418)
T ss_dssp CC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT-TSEEEEEEESTT
T ss_pred HHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc-cCcEEEEEEccc
Confidence 999999999999 99999999 69998873 44555543 788888888643
No 115
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.64 E-value=1.3e-19 Score=169.52 Aligned_cols=172 Identities=12% Similarity=0.100 Sum_probs=114.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCH
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTE 156 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~ 156 (508)
|++++|+||||||||||+++|++ +.+|.+.++|.++... ...++++|.....+..|+++++.+.+........
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-- 74 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM--VVGGYRPPWESDELLALTWKNITDLTVNFLLAQN-- 74 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT--CCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh--hccccccCccchhHHHHHHHHHHHHHHHHHhcCC--
Confidence 78999999999999999999997 5678999998765321 2356777765444556788887665422100000
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCcc--CHHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHHHHHHH
Q 010509 157 KEKIKCAEAVMTELGLSECKNSLIGGPLTRGV--SGGERKRVSIGQ------EILINPSLLFLDEPTSGLDSTIAQQILS 228 (508)
Q Consensus 157 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~L--SGGerqRv~Ia~------aL~~~P~illLDEPtsgLD~~~~~~i~~ 228 (508)
..+++.+. ....... .+.+ |+|++|++.++. +++.+|+...+|| +||+..... .+
T Consensus 75 -------~~ild~~~-~~~~~~~-----~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~ 137 (189)
T 2bdt_A 75 -------DVVLDYIA-FPDEAEA-----LAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VE 137 (189)
T ss_dssp -------EEEEESCC-CHHHHHH-----HHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HH
T ss_pred -------cEEEeecc-CHHHHHH-----HHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HH
Confidence 00111100 0000000 1234 889988888888 9999999888884 899988888 88
Q ss_pred HHHHHHcCCCEEEEEecC-cchHHHhhccEEEEEeCCeEEEEcChhhH
Q 010509 229 ILLKLANGGRTIVMTIHQ-PSNMLYYMFHKVLLLSEGYPLYSGEASGA 275 (508)
Q Consensus 229 ~L~~l~~~g~tii~s~H~-~~~~~~~~~D~v~lL~~G~iv~~G~~~~~ 275 (508)
.++.+.+.+.++|.++|+ ++ .+.+.+|+|+ ++|+++..|+++-.
T Consensus 138 ~~~~~~~~~~~ii~tsh~~~~-~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 138 EFESKGIDERYFYNTSHLQPT-NLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp HHHHTTCCTTSEEECSSSCGG-GHHHHHHHHH--HCGGGSCC------
T ss_pred HHhhcCCCccEEEeCCCCChh-hHHHHHHHHh--hCCcEEEeecCCch
Confidence 888887668899999998 76 4778899998 99999999987644
No 116
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.62 E-value=4.4e-16 Score=147.96 Aligned_cols=154 Identities=19% Similarity=0.221 Sum_probs=101.4
Q ss_pred eeeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 65 AILKGIT-GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 65 ~iL~~vs-~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
+.|+++. +-+++|++++|.||||||||||++.|++ ...+ .+.|+..+..+ +.. .+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~---~~~~---------------~v~~i~~~~~~----~~~-~~~ 63 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL---LSGK---------------KVAYVDTEGGF----SPE-RLV 63 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH---HHCS---------------EEEEEESSCCC----CHH-HHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH---HcCC---------------cEEEEECCCCC----CHH-HHH
Confidence 4567766 4799999999999999999999999998 1112 23344433311 211 111
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH--HHHHHHHHHHhhC-CCEEEEeCCCCCCCH
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE--RKRVSIGQEILIN-PSLLFLDEPTSGLDS 220 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe--rqRv~Ia~aL~~~-P~illLDEPtsgLD~ 220 (508)
-... .. .... +++++.+. + ...|+++ ++++..+++++.+ |+++++||||+.+|+
T Consensus 64 ~~~~-~~--~~~~-------~~~~~~~~--------~-----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~ 120 (220)
T 2cvh_A 64 QMAE-TR--GLNP-------EEALSRFI--------L-----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRA 120 (220)
T ss_dssp HHHH-TT--TCCH-------HHHHHHEE--------E-----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTG
T ss_pred HHHH-hc--CCCh-------HHHhhcEE--------E-----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhh
Confidence 1000 00 1111 11222221 1 1345554 5688888899986 999999999999997
Q ss_pred HH--------HHHHHHHHHHHHcC-CCEEEEEecCcch------------HHHhhccEEEEEeCC
Q 010509 221 TI--------AQQILSILLKLANG-GRTIVMTIHQPSN------------MLYYMFHKVLLLSEG 264 (508)
Q Consensus 221 ~~--------~~~i~~~L~~l~~~-g~tii~s~H~~~~------------~~~~~~D~v~lL~~G 264 (508)
.. ..++++.|++++++ |.|||+++|.... .+.+.+|++++|++.
T Consensus 121 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 121 EENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 43 35566778888764 8999999998652 467899999999854
No 117
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.61 E-value=1.2e-18 Score=162.74 Aligned_cols=153 Identities=12% Similarity=0.064 Sum_probs=98.0
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcC
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQL 150 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~ 150 (508)
.+++|++++|+||||||||||+++|+|+ +..|.|.++|.++.. ..++.++|++|+.. +.+|+.|++.+.+....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~~~~ 80 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAGRYA 80 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHHHHh
Confidence 3679999999999999999999999998 678999999876532 11234677777544 45788888876542210
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH
Q 010509 151 PNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSIL 230 (508)
Q Consensus 151 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L 230 (508)
.... ...++.+++.+++....+. +..+..+|+|++||+.++|++..+|+++ +|+.....+.+.+
T Consensus 81 ~~~~-----~~~~~~~~~~~~l~~~~~~---~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~ 144 (191)
T 1zp6_A 81 KEGY-----FVILDGVVRPDWLPAFTAL---ARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQF 144 (191)
T ss_dssp HTSC-----EEEECSCCCTTTTHHHHTT---CSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHT
T ss_pred ccCC-----eEEEeccCcHHHHHHHHhc---CCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHH
Confidence 0000 0000111111122211100 1112479999999999999999999876 6888888887777
Q ss_pred HHHHcCCCEEEEEec
Q 010509 231 LKLANGGRTIVMTIH 245 (508)
Q Consensus 231 ~~l~~~g~tii~s~H 245 (508)
+.+.+.+..+|-++|
T Consensus 145 ~~l~~~~~~~i~t~~ 159 (191)
T 1zp6_A 145 ADLGAFEHHVLPVSG 159 (191)
T ss_dssp TCCGGGGGGEEECTT
T ss_pred hccCcccccEEECCC
Confidence 666443334444443
No 118
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.61 E-value=5.8e-19 Score=172.44 Aligned_cols=147 Identities=20% Similarity=0.209 Sum_probs=103.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHh---cCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcC--
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALG---GRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQL-- 150 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~---g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~-- 150 (508)
++++++|+||||||||||+++|+ |+..++.|+|.++|.+......+.+.+++|+..+++..|+.|++........
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~ 105 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQ 105 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 47999999999999999999999 9998999999888765432333445667788888888899999976432100
Q ss_pred ---CCCCCHHHHHHHHHHHHH--HcC------------CCcccccccCCCCCCccCHHHHHHHHHHHHH-hhCCCEEEEe
Q 010509 151 ---PNSFTEKEKIKCAEAVMT--ELG------------LSECKNSLIGGPLTRGVSGGERKRVSIGQEI-LINPSLLFLD 212 (508)
Q Consensus 151 ---~~~~~~~~~~~~v~~~l~--~lg------------L~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL-~~~P~illLD 212 (508)
-.+.+... +.++.+.+ ..+ +....++.+ ..||| |+ +++ +.+|++++||
T Consensus 106 ~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~-----~~lSg----rv---~al~~~~P~~lllD 171 (246)
T 2bbw_A 106 HWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWI-----HPPSG----RV---YNLDFNPPHVHGID 171 (246)
T ss_dssp CEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEE-----ETTTT----EE---EETTTSCCSSTTBC
T ss_pred eEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCC-----cCCCC----Cc---cccccCCCcccccc
Confidence 00111111 11222221 122 122223333 47898 66 677 9999999999
Q ss_pred ----CCCCCCCHHHHHHHHHHHHHHHcC
Q 010509 213 ----EPTSGLDSTIAQQILSILLKLANG 236 (508)
Q Consensus 213 ----EPtsgLD~~~~~~i~~~L~~l~~~ 236 (508)
|||+|||..+...+.+.++++.++
T Consensus 172 ~~~~EP~~~ld~~~~~~i~~~l~~~~~~ 199 (246)
T 2bbw_A 172 DVTGEPLVQQEDDKPEAVAARLRQYKDV 199 (246)
T ss_dssp TTTCCBCBCCGGGSHHHHHHHHHHHHHH
T ss_pred cccccccccCCCCcHHHHHHHHHHHHHh
Confidence 999999999999999999988764
No 119
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.60 E-value=9.9e-17 Score=166.63 Aligned_cols=130 Identities=16% Similarity=0.306 Sum_probs=98.3
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCc-ccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRI-NGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~-~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
.+|++++ +++|++++|+||||||||||+++|+|.+++. +|+|.+.|.++....++.++||+|..
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~~------------- 190 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQRE------------- 190 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEEE-------------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEeee-------------
Confidence 3567766 7899999999999999999999999998877 89998877665433456678888841
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIA 223 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~ 223 (508)
+|+.. ..+ +.+|+++|..+|+++++|||+ |+.+.
T Consensus 191 --------------------------~g~~~-----------~~~------~~~l~~~L~~~pd~illdE~~---d~e~~ 224 (372)
T 2ewv_A 191 --------------------------VGEDT-----------KSF------ADALRAALREDPDVIFVGEMR---DLETV 224 (372)
T ss_dssp --------------------------BTTTB-----------SCS------HHHHHHHTTSCCSEEEESCCC---SHHHH
T ss_pred --------------------------cCCCH-----------HHH------HHHHHHHhhhCcCEEEECCCC---CHHHH
Confidence 12211 134 469999999999999999999 77654
Q ss_pred HHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEE
Q 010509 224 QQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLL 261 (508)
Q Consensus 224 ~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL 261 (508)
.. .++. +..|.+++.|+|+.+ +...+||++.|
T Consensus 225 ~~---~l~~-~~~g~~vi~t~H~~~--~~~~~~rl~~l 256 (372)
T 2ewv_A 225 ET---ALRA-AETGHLVFGTLHTNT--AIDTIHRIVDI 256 (372)
T ss_dssp HH---HHHH-HTTTCEEEECCCCCS--HHHHHHHHHHT
T ss_pred HH---HHHH-HhcCCEEEEEECcch--HHHHHHHHHHh
Confidence 43 3443 456899999999965 55667776544
No 120
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.59 E-value=3.2e-15 Score=139.01 Aligned_cols=90 Identities=17% Similarity=0.268 Sum_probs=73.1
Q ss_pred CCccCHHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEE
Q 010509 185 TRGVSGGERKRVSIGQEILI----NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLL 260 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~----~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~l 260 (508)
+..||||||||++||++|+. +|++++|||||+|||+.+...+.+.|+++.+ +.++|++||+.. ....+|+++.
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~-~~~~ivith~~~--~~~~ad~i~~ 138 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK-ESQFIVITLRDV--MMANADKIIG 138 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT-TSEEEEECSCHH--HHTTCSEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc-CCEEEEEEecHH--HHHhCCEEEE
Confidence 46899999999999999975 4699999999999999999999999999865 468999999963 5688999986
Q ss_pred Ee--CCeE-EEEcChhhHHH
Q 010509 261 LS--EGYP-LYSGEASGAMN 277 (508)
Q Consensus 261 L~--~G~i-v~~G~~~~~~~ 277 (508)
+. +|.. +...+.++..+
T Consensus 139 v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 139 VSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEETTEEEEEECCHHHHHH
T ss_pred EEecCCEEEEEEEEcHHHHH
Confidence 64 6643 34445444443
No 121
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.59 E-value=1.1e-16 Score=168.11 Aligned_cols=166 Identities=15% Similarity=0.163 Sum_probs=112.1
Q ss_pred cceeeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC----hhccccEEEEecCCCCCCCC
Q 010509 63 EKAILKGITGMVKPGEM--LAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS----NQMTRNTGFVTQEDVLSPYL 136 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~--~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~----~~~~~~i~yv~Q~~~l~~~l 136 (508)
..+ |+++|+++++|++ ++|+||||||||||+|+|+|.. ++|.++. ...++.++|++|++.+++.+
T Consensus 27 ~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~l 97 (427)
T 2qag_B 27 SLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSNTYDLQESNVRLKL 97 (427)
T ss_dssp --C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEEEEEEEC--CEEEE
T ss_pred Cee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeEEEEeecCcccccc
Confidence 455 9999999999999 9999999999999999999984 2232221 12345799999999988899
Q ss_pred CHHHHHHHHHHhcCCCCCCHH--------HHHHHHHHHHHHc-CCCc----ccccc----cC--CCCCCccCHHHHHHHH
Q 010509 137 TVTETMVFTALLQLPNSFTEK--------EKIKCAEAVMTEL-GLSE----CKNSL----IG--GPLTRGVSGGERKRVS 197 (508)
Q Consensus 137 Tv~E~l~~~~~l~~~~~~~~~--------~~~~~v~~~l~~l-gL~~----~~~~~----vg--~~~~~~LSGGerqRv~ 197 (508)
||.||+.++.. .+.. ...+..++.|+.. ++.. ..|+. +. .+..++++-.+ +.
T Consensus 98 tv~D~~~~g~~------~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ie 168 (427)
T 2qag_B 98 TIVSTVGFGDQ------INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLD---LV 168 (427)
T ss_dssp EEEEEECCCC-------CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHH---HH
T ss_pred chhhhhhhhhc------cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHH---HH
Confidence 99999866432 1111 1233455566654 5432 12222 10 01113566666 78
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-HHcCCCEEEEEecC
Q 010509 198 IGQEILINPSLLFLDEPTSGLDSTIAQQILSILLK-LANGGRTIVMTIHQ 246 (508)
Q Consensus 198 Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~-l~~~g~tii~s~H~ 246 (508)
|+++|..+++++++|||+..|.+.....+.+.+++ +...|..|+.++.+
T Consensus 169 ilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 169 TMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 99999999999999999999999999999999987 77789999888754
No 122
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.58 E-value=6.9e-16 Score=158.91 Aligned_cols=121 Identities=17% Similarity=0.149 Sum_probs=90.1
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCC-CcccEEEEC-CEeCChhccccEEEEecCCCCCCCCCHHHHHHH
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLG-RINGRITYN-GKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVF 144 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~-~~~G~I~~~-G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 144 (508)
+++++.. .+|++++|+||||||||||+|+|+|... +.+|+|.++ |+......++.+++++|+..++++.|++|+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~--- 281 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF--- 281 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTC---
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh---
Confidence 5566653 4899999999999999999999999998 999999987 766544445679999999999998899884
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHH
Q 010509 145 TALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEI 202 (508)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL 202 (508)
. + ...++++..+++.++++.+|+.+..|.... ++| ||+||++||+++
T Consensus 282 ~--l---~~l~~~e~~~~~~e~l~~~gl~~f~~~~~~-----~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 282 G--L---WHLEPEQITQGFVEFHDYLGHCKYRDCKHD-----ADP-GCAIREAVENGA 328 (358)
T ss_dssp C--C---CCCCHHHHHHTSGGGGGGTTCSSSTTCCSS-----SCT-TCHHHHHHHHTS
T ss_pred h--h---cCCCHHHHHHHHHHHHHHcCCchhcCCCcc-----cCC-HHHHHHHHHhcC
Confidence 1 1 134566667778899999999888776654 899 999999999764
No 123
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.58 E-value=3.7e-19 Score=181.01 Aligned_cols=161 Identities=12% Similarity=0.107 Sum_probs=108.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC--------CCcccEEEECCEeCCh-------------------hccccEEEE---
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL--------GRINGRITYNGKPFSN-------------------QMTRNTGFV--- 126 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~--------~~~~G~I~~~G~~~~~-------------------~~~~~i~yv--- 126 (508)
=++++|+|+||||||||||.|.|.. .++.|+|.++|.++.. .+++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3689999999999999999999986 6799999999988642 123346666
Q ss_pred ecCCCCCCCCCHHHHHHHHHHhcCCCCC---CHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh
Q 010509 127 TQEDVLSPYLTVTETMVFTALLQLPNSF---TEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL 203 (508)
Q Consensus 127 ~Q~~~l~~~lTv~E~l~~~~~l~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~ 203 (508)
+|+..+++..++.|+..++......... +......+++.++..+++.+..++.. ++|+||+||+..++.++
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~------~ls~g~~Q~~~ad~ill 157 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN------QFTIAQSQVGYADRILL 157 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH------HCHHHHHHHHTCSEEEE
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh------hchHHHHHHHhCCEEEE
Confidence 5776666677777776542100000000 00001111222344455555554443 68999999999888888
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhcc
Q 010509 204 INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFH 256 (508)
Q Consensus 204 ~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D 256 (508)
++|+++ ||| .++.+.|+++. .+.||++++|++.+ ...++|
T Consensus 158 ~k~dl~--de~---------~~l~~~l~~l~-~~~~ii~~sh~~~~-~~~l~~ 197 (318)
T 1nij_A 158 TKTDVA--GEA---------EKLHERLARIN-ARAPVYTVTHGDID-LGLLFN 197 (318)
T ss_dssp ECTTTC--SCT---------HHHHHHHHHHC-SSSCEEECCSSCCC-GGGGSC
T ss_pred ECcccC--CHH---------HHHHHHHHHhC-CCCeEEEecccCCC-HHHHhC
Confidence 999887 998 77888888874 58999999998653 334443
No 124
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.57 E-value=3.3e-16 Score=162.08 Aligned_cols=137 Identities=17% Similarity=0.166 Sum_probs=103.4
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC-Ch-hccccEEEEe-cCCCCCCCCCHHHHH
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF-SN-QMTRNTGFVT-QEDVLSPYLTVTETM 142 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~-~~-~~~~~i~yv~-Q~~~l~~~lTv~E~l 142 (508)
+++++|+.+++|++++|+||||||||||+|+|+|+++|++|.|.++|.+- .. ..++.++|++ |++.+
T Consensus 164 ~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~---------- 233 (361)
T 2gza_A 164 YMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE---------- 233 (361)
T ss_dssp HHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCCTTCSSEEEEECC---------------
T ss_pred HHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCccccCCEEEEeecCcccc----------
Confidence 34999999999999999999999999999999999999999999998532 11 2456788988 54321
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 010509 143 VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTI 222 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~ 222 (508)
+++++..+|..|+.++..+|+.+++|||..
T Consensus 234 --------------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~------ 263 (361)
T 2gza_A 234 --------------------------------------------EENAPVTAATLLRSCLRMKPTRILLAELRG------ 263 (361)
T ss_dssp -------------------------------------------------CCHHHHHHHHTTSCCSEEEESCCCS------
T ss_pred --------------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCchH------
Confidence 012333466677777888899999999986
Q ss_pred HHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeCCe
Q 010509 223 AQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 223 ~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~ 265 (508)
.++.+.|+.+.....|++.++|..+ ....+||+..|..|.
T Consensus 264 -~~~~~~l~~l~~g~~~~l~t~H~~~--~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 264 -GEAYDFINVAASGHGGSITSCHAGS--CELTFERLALMVLQN 303 (361)
T ss_dssp -THHHHHHHHHHTTCCSCEEEEECSS--HHHHHHHHHHHHTTS
T ss_pred -HHHHHHHHHHhcCCCeEEEEECCCC--HHHHHHHHHHHHhcc
Confidence 3456677777654568899999965 557789999988764
No 125
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.54 E-value=5.6e-18 Score=175.32 Aligned_cols=162 Identities=15% Similarity=0.091 Sum_probs=103.4
Q ss_pred eeeceEEEEeC--CeEEEEECCCCCcHHHHHHHHhcCCCCcc----cEEEEC----CEeCC---hhccccEEEEecCCCC
Q 010509 66 ILKGITGMVKP--GEMLAMLGPSGCGKTTLLTALGGRLGRIN----GRITYN----GKPFS---NQMTRNTGFVTQEDVL 132 (508)
Q Consensus 66 iL~~vs~~v~~--Ge~~ailG~nGsGKSTLL~~L~g~~~~~~----G~I~~~----G~~~~---~~~~~~i~yv~Q~~~l 132 (508)
+.+.|++.|++ |+.++|+||||||||||+++|+|++++++ |+|.++ |.+.. ... +.+++++|+..+
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~~~~~~~~-~~I~~~~q~~~~ 235 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDY-PQMALGHQRYID 235 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTTSSCTTTH-HHHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcccCChhHH-HHHHHHHHHHHH
Confidence 45789999999 99999999999999999999999999988 777664 22210 001 112333222110
Q ss_pred CCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh-hCCCEEEE
Q 010509 133 SPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL-INPSLLFL 211 (508)
Q Consensus 133 ~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~-~~P~illL 211 (508)
++ .|+.||+.+ +..+..++.+ ..+|+|++||..+++++. .+|++++|
T Consensus 236 ~~-~t~~~nl~~--------------------------~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~lllL 283 (365)
T 1lw7_A 236 YA-VRHSHKIAF--------------------------IDTDFITTQA-----FCIQYEGKAHPFLDSMIKEYPFDVTIL 283 (365)
T ss_dssp HH-HHHCSSEEE--------------------------ESSCHHHHHH-----HHHHHHSCCCHHHHHHHHHSCCSEEEE
T ss_pred HH-HhccCCEEE--------------------------EeCCchHHHH-----HHHHHcCCCCHHHHHHHhhcCCCEEEE
Confidence 00 111111100 0011111111 246777888888887775 59999999
Q ss_pred eC---CC------CCCCHHHHHHHHHHHHHHHc-CCCEEEEEecCcchHHHhhccEEEEEe
Q 010509 212 DE---PT------SGLDSTIAQQILSILLKLAN-GGRTIVMTIHQPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 212 DE---Pt------sgLD~~~~~~i~~~L~~l~~-~g~tii~s~H~~~~~~~~~~D~v~lL~ 262 (508)
|| |+ .++|...+..+.+.|+++.+ .|.+|++++|. + ...+++|++.+++
T Consensus 284 dE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 284 LKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIE 342 (365)
T ss_dssp EECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHH
T ss_pred CCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHH
Confidence 99 65 58999999999999999754 48899999975 3 3556677666554
No 126
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.53 E-value=6.4e-15 Score=142.05 Aligned_cols=150 Identities=17% Similarity=0.271 Sum_probs=86.9
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhc--CCCC-----cccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHH
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGG--RLGR-----INGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVF 144 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g--~~~~-----~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 144 (508)
+-+++|++++|+||||||||||++.|++ ..++ ..|.+++++.+. + ...+....
T Consensus 19 ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~----------------~----~~~~~~~~ 78 (243)
T 1n0w_A 19 GGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT----------------F----RPERLLAV 78 (243)
T ss_dssp TSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC----------------C----CHHHHHHH
T ss_pred CCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC----------------c----CHHHHHHH
Confidence 5699999999999999999999999999 4444 455666655431 0 11110001
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH-HHHHHHHh--hCCCEEEEeCCCCCCCHH
Q 010509 145 TALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR-VSIGQEIL--INPSLLFLDEPTSGLDST 221 (508)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR-v~Ia~aL~--~~P~illLDEPtsgLD~~ 221 (508)
...+ ....+ ++++.+.+ ....+..+... +.-+.+++ .+|+++++|||++.+|+.
T Consensus 79 ~~~~----g~~~~-------~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~ 135 (243)
T 1n0w_A 79 AERY----GLSGS-------DVLDNVAY------------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTD 135 (243)
T ss_dssp HHHT----TCCHH-------HHHHTEEE------------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--
T ss_pred HHHc----CCCHH-------HHhhCeEE------------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHH
Confidence 0011 01111 11121100 01344444332 23233443 489999999999999985
Q ss_pred -------H-----HHHHHHHHHHHHcC-CCEEEEEecCcchH------------------HHhhccEEEEEeCC
Q 010509 222 -------I-----AQQILSILLKLANG-GRTIVMTIHQPSNM------------------LYYMFHKVLLLSEG 264 (508)
Q Consensus 222 -------~-----~~~i~~~L~~l~~~-g~tii~s~H~~~~~------------------~~~~~D~v~lL~~G 264 (508)
. ..++++.|++++++ |.|||+++|..... +.+.+|++++|++|
T Consensus 136 ~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 136 YSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred hcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 3 34566677777654 99999999965431 22379999999865
No 127
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.53 E-value=1.6e-16 Score=145.65 Aligned_cols=80 Identities=19% Similarity=0.129 Sum_probs=68.4
Q ss_pred ccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHH
Q 010509 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTET 141 (508)
Q Consensus 62 ~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~ 141 (508)
+++.+++++|+++++|++++|+||||||||||+|+|+|.+ |++|+|.++|.++....... .+++|+..++ .+||.|+
T Consensus 18 g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~-~~~~q~~~l~-~ltv~e~ 94 (158)
T 1htw_A 18 GKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIA-GKMIYHFDLY-RLADPEE 94 (158)
T ss_dssp HHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEET-TEEEEEEECT-TCSCTTH
T ss_pred HHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCC-Ccceeccccc-cCCcHHH
Confidence 3567899999999999999999999999999999999998 89999999998774322111 2899998888 8999999
Q ss_pred HHH
Q 010509 142 MVF 144 (508)
Q Consensus 142 l~~ 144 (508)
+.+
T Consensus 95 l~~ 97 (158)
T 1htw_A 95 LEF 97 (158)
T ss_dssp HHH
T ss_pred HHH
Confidence 865
No 128
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.52 E-value=3.3e-16 Score=166.71 Aligned_cols=152 Identities=13% Similarity=0.116 Sum_probs=106.9
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--------h--ccccEEEEecCCCCCCCC
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--------Q--MTRNTGFVTQEDVLSPYL 136 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--------~--~~~~i~yv~Q~~~l~~~l 136 (508)
-+++|+++++|++++|+|+||||||||+++|+|++.+.+|+|.++|.+... . .++.++|++|+..+++.+
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 368999999999999999999999999999999998889999998877532 1 245799999998888889
Q ss_pred CHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh-hCC-CEEEEeCC
Q 010509 137 TVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL-INP-SLLFLDEP 214 (508)
Q Consensus 137 Tv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~-~~P-~illLDEP 214 (508)
|+++++.++..-. .+ . -+++..|+.+... .+-.--+|++.+++++. ..| .++|...|
T Consensus 363 tV~e~l~~a~~~~----~D------v--VLIDTaGrl~~~~---------~lm~EL~kiv~iar~l~~~~P~evLLvLDa 421 (503)
T 2yhs_A 363 VIFDAIQAAKARN----ID------V--LIADTAGRLQNKS---------HLMEELKKIVRVMKKLDVEAPHEVMLTIDA 421 (503)
T ss_dssp HHHHHHHHHHHTT----CS------E--EEECCCCSCCCHH---------HHHHHHHHHHHHHHTTCTTCSSEEEEEEEG
T ss_pred HHHHHHHHHHhcC----CC------E--EEEeCCCccchhh---------hHHHHHHHHHHHHHHhccCCCCeeEEEecC
Confidence 9999998864311 00 0 0122233322211 11122357888888764 457 45656568
Q ss_pred CCCCCHHHHHHHHHHHHHHHc-CCCEEEEEec
Q 010509 215 TSGLDSTIAQQILSILLKLAN-GGRTIVMTIH 245 (508)
Q Consensus 215 tsgLD~~~~~~i~~~L~~l~~-~g~tii~s~H 245 (508)
|+|.|.. +.++.+.+ -|.|.++.||
T Consensus 422 ttGq~al------~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 422 STGQNAV------SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp GGTHHHH------HHHHHHHHHTCCSEEEEEC
T ss_pred cccHHHH------HHHHHHHhhcCCCEEEEEc
Confidence 8886654 33444443 4889999999
No 129
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.51 E-value=1.7e-15 Score=154.60 Aligned_cols=162 Identities=12% Similarity=0.145 Sum_probs=109.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--------hcc--ccEEEEecCCCCCCCCCHHHHHH
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--------QMT--RNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--------~~~--~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
.++|++++|+||||||||||++.|+|++.+.+|+|.+.|.++.. .++ ..+.+++|+..+.|.+||+|++.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 36899999999999999999999999999999999999998742 112 24669999999999999999998
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIA 223 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~ 223 (508)
++..... . . .+++..|+.+..+..+ .+|| .+++++..++++++||.+|.
T Consensus 206 ~~~~~~~--d--------~--vliDtaG~~~~~~~l~-----~eL~-------~i~ral~~de~llvLDa~t~------- 254 (328)
T 3e70_C 206 HAKARGI--D--------V--VLIDTAGRSETNRNLM-----DEMK-------KIARVTKPNLVIFVGDALAG------- 254 (328)
T ss_dssp HHHHHTC--S--------E--EEEEECCSCCTTTCHH-----HHHH-------HHHHHHCCSEEEEEEEGGGT-------
T ss_pred HHHhccc--h--------h--hHHhhccchhHHHHHH-----HHHH-------HHHHHhcCCCCEEEEecHHH-------
Confidence 7532110 0 0 0122233333222221 2333 38888888888888885543
Q ss_pred HHHHHHHHHHHc-CCCEEEEEecCcch--------HHHhhccEEEEEeCCeE
Q 010509 224 QQILSILLKLAN-GGRTIVMTIHQPSN--------MLYYMFHKVLLLSEGYP 266 (508)
Q Consensus 224 ~~i~~~L~~l~~-~g~tii~s~H~~~~--------~~~~~~D~v~lL~~G~i 266 (508)
.++++.++.+.+ .+.|+|++||.... ......-.|..+..|+-
T Consensus 255 ~~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 255 NAIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp THHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 356666677664 58999999996421 12233345666666643
No 130
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.50 E-value=3.1e-17 Score=168.21 Aligned_cols=162 Identities=15% Similarity=0.150 Sum_probs=110.7
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--------hccccEEEEecCCCCCC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--------QMTRNTGFVTQEDVLSP 134 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--------~~~~~i~yv~Q~~~l~~ 134 (508)
.+.+|+++|+++++|++++|+||||||||||+|+|+|.+.|++|+|.+.|.++.. ..++.++|++|++.+++
T Consensus 41 ~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 41 VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFI 120 (337)
T ss_dssp HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEE
T ss_pred hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCccccc
Confidence 3568999999999999999999999999999999999998899999999988732 23567899999988775
Q ss_pred CCC------------HHHHHHHHH-----------------------------HhcCCCCCCHHHHH---HHHHHHHHHc
Q 010509 135 YLT------------VTETMVFTA-----------------------------LLQLPNSFTEKEKI---KCAEAVMTEL 170 (508)
Q Consensus 135 ~lT------------v~E~l~~~~-----------------------------~l~~~~~~~~~~~~---~~v~~~l~~l 170 (508)
..+ +.|.+.... .+..+. ...+.+ +.+.+....+
T Consensus 121 ~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~--~~~~~~~i~~~i~~~~~iv 198 (337)
T 2qm8_A 121 RPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPG--AGDELQGIKKGIFELADMI 198 (337)
T ss_dssp ECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSC--C------CCTTHHHHCSEE
T ss_pred ccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCC--CcccHHHHHHHHhccccEE
Confidence 321 233321100 000000 001100 0111111112
Q ss_pred CCCcccccccCCCCCCccCHHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc
Q 010509 171 GLSECKNSLIGGPLTRGVSGGERKRVSIGQEILI------NPSLLFLDEPTSGLDSTIAQQILSILLKLAN 235 (508)
Q Consensus 171 gL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~------~P~illLDEPtsgLD~~~~~~i~~~L~~l~~ 235 (508)
.+ +..|.. ..+.+|+|++|++..+++++. +|++++ ||++|.....++++.|.++.+
T Consensus 199 vl-NK~Dl~----~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 199 AV-NKADDG----DGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EE-ECCSTT----CCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHHH
T ss_pred EE-Echhcc----CchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHHH
Confidence 22 112211 124689999999999999987 688887 999999999999999988753
No 131
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.48 E-value=1.1e-13 Score=143.47 Aligned_cols=75 Identities=24% Similarity=0.356 Sum_probs=67.0
Q ss_pred CCccCHHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccE
Q 010509 185 TRGVSGGERKRV------SIGQEILIN-PSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 185 ~~~LSGGerqRv------~Ia~aL~~~-P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~ 257 (508)
+..+|||||||+ ++|++|+.+ |++++|||||+|||+..+..+.+.|+++.+ +.+||++||++. +...+|+
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~vi~~th~~~--~~~~~d~ 354 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS-IPQMIIITHHRE--LEDVADV 354 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS-CSEEEEEESCGG--GGGGCSE
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc-CCeEEEEEChHH--HHhhCCE
Confidence 468999999988 567888999 999999999999999999999999999753 468999999974 5688999
Q ss_pred EEEEe
Q 010509 258 VLLLS 262 (508)
Q Consensus 258 v~lL~ 262 (508)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
No 132
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.48 E-value=1.9e-15 Score=140.10 Aligned_cols=114 Identities=20% Similarity=0.167 Sum_probs=78.8
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcC
Q 010509 71 TGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQL 150 (508)
Q Consensus 71 s~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~ 150 (508)
++.+++|+.++|.||||+|||||+++|++...+.+|.. +.| +++.+.+...
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~--------------~~~----------~~~~~~~~~~----- 82 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR--------------GYF----------FDTKDLIFRL----- 82 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC--------------CCE----------EEHHHHHHHH-----
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe--------------EEE----------EEHHHHHHHH-----
Confidence 35567899999999999999999999999875444421 111 2233322111
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHH
Q 010509 151 PNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS-GLDSTIAQQILSI 229 (508)
Q Consensus 151 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPts-gLD~~~~~~i~~~ 229 (508)
......- ... -....+.+|++|++|||++ ++|+..+..+.++
T Consensus 83 -------------~~~~~~~----------------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 83 -------------KHLMDEG----------------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp -------------HHHHHHT----------------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred -------------HHHhcCc----------------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 0001100 000 1123345999999999985 9999999999999
Q ss_pred HHHHHcCCCEEEEEecCcchH
Q 010509 230 LLKLANGGRTIVMTIHQPSNM 250 (508)
Q Consensus 230 L~~l~~~g~tii~s~H~~~~~ 250 (508)
+.+..++|+++|++||.+...
T Consensus 126 l~~~~~~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSLQR 146 (180)
T ss_dssp HHHHHHTTCEEEEECCCCSCC
T ss_pred HHHHHHcCCCEEEEcCCChhH
Confidence 999887899999999998653
No 133
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.46 E-value=2.7e-15 Score=151.45 Aligned_cols=121 Identities=16% Similarity=0.191 Sum_probs=84.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEE---CCEeCCh---hcc-ccEEEEecCCCCC-----CCCCHHHH
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITY---NGKPFSN---QMT-RNTGFVTQEDVLS-----PYLTVTET 141 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~---~G~~~~~---~~~-~~i~yv~Q~~~l~-----~~lTv~E~ 141 (508)
+.+|++++|+||||||||||+|+|+ +..+.+|+|.+ +|++.+. ..+ +.+||++|++.+. +.+|+ |+
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~ 239 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-RE 239 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HH
Confidence 3469999999999999999999999 98999999999 9988753 122 3689999998653 78899 88
Q ss_pred H--HHHH----HhcCCCCCCHHHHHHHHHHHHHHcCCCc-ccccccCCCCCCccCHHHHHHHHHHHH
Q 010509 142 M--VFTA----LLQLPNSFTEKEKIKCAEAVMTELGLSE-CKNSLIGGPLTRGVSGGERKRVSIGQE 201 (508)
Q Consensus 142 l--~~~~----~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~vg~~~~~~LSGGerqRv~Ia~a 201 (508)
+ .|.. .++........+...+++++++.++|.+ ..+++. +.|||.++|++.|||+
T Consensus 240 l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 240 VRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----KIIKVYLEEIKELCRE 301 (302)
T ss_dssp GGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----HHTTCCCTTHHHHSSC
T ss_pred HHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----HHHHHHHHHHHHHhcc
Confidence 7 4431 0111111112233457889999999986 666665 4899999999999874
No 134
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.45 E-value=3.4e-16 Score=145.29 Aligned_cols=135 Identities=19% Similarity=0.229 Sum_probs=88.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCc---ccEEEECCEeCC-------hhcc-ccEE----EEecCCCCCCCCCHHHHH
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRLGRI---NGRITYNGKPFS-------NQMT-RNTG----FVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~~~~---~G~I~~~G~~~~-------~~~~-~~i~----yv~Q~~~l~~~lTv~E~l 142 (508)
++++|+|+||||||||++.|+|++.+. .|.|.++|.++. ..++ +.+| +++|+..++ +.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i~~-- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----IRR-- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----EEE--
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----Eec--
Confidence 579999999999999999999998776 899999998742 1333 3466 888876654 100
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHH-cCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEE-------EEeCC
Q 010509 143 VFTALLQLPNSFTEKEKIKCAEAVMTE-LGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLL-------FLDEP 214 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~il-------lLDEP 214 (508)
. .. +....++++++. +. -.|+.++. +||||||||++|||+++.+|++. .-|.|
T Consensus 77 --------~---~~-~~~a~l~~~i~~~l~---g~dt~i~E----glSgGq~qri~lARall~~p~i~~~~~~a~~~~~~ 137 (171)
T 2f1r_A 77 --------V---SE-EEGNDLDWIYERYLS---DYDLVITE----GFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDER 137 (171)
T ss_dssp --------C---CH-HHHTCHHHHHHHHTT---TCSEEEEE----SCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSC
T ss_pred --------C---Ch-hhhhCHHHHHHhhCC---CCCEEEEC----CcCCCCCcEEEEEecccCCCccCccceEEEEecCC
Confidence 0 11 111234556665 43 35788873 69999999999999999999873 22454
Q ss_pred CCC---CCHHHHHHHHHHHHHHHcCC
Q 010509 215 TSG---LDSTIAQQILSILLKLANGG 237 (508)
Q Consensus 215 tsg---LD~~~~~~i~~~L~~l~~~g 237 (508)
..+ +|......+.+.+.+...+|
T Consensus 138 ~~~~~~f~~~~~~~~a~~i~~~~~~~ 163 (171)
T 2f1r_A 138 VDGHKWFRRDEVERIAEFILSLLREG 163 (171)
T ss_dssp CSSSCEECTTCHHHHHHHHHHHHTC-
T ss_pred cccCcccCcccHHHHHHHHHHHHhcc
Confidence 322 33445567777776665554
No 135
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.45 E-value=2e-14 Score=130.15 Aligned_cols=97 Identities=19% Similarity=0.356 Sum_probs=72.2
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHH
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVF 144 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 144 (508)
.+|+++ +|+.++|+||||+|||||+++|++...+ +| ..+.|+...+....
T Consensus 29 ~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g--------------~~~~~~~~~~~~~~---------- 78 (149)
T 2kjq_A 29 YVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG--------------KNAAYIDAASMPLT---------- 78 (149)
T ss_dssp HHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT--------------CCEEEEETTTSCCC----------
T ss_pred HHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC--------------CcEEEEcHHHhhHH----------
Confidence 456676 8999999999999999999999997754 35 01233333221100
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 010509 145 TALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQ 224 (508)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~ 224 (508)
+++.+|++|++|||++ +|...+.
T Consensus 79 --------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~ 101 (149)
T 2kjq_A 79 --------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQA 101 (149)
T ss_dssp --------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHHH
T ss_pred --------------------------------------------------------HHHhCCCEEEEeCccc-cChHHHH
Confidence 1245799999999998 6655588
Q ss_pred HHHHHHHHHHcCCCE-EEEEecCcc
Q 010509 225 QILSILLKLANGGRT-IVMTIHQPS 248 (508)
Q Consensus 225 ~i~~~L~~l~~~g~t-ii~s~H~~~ 248 (508)
.+.+++.++.++|++ +|+++|.+.
T Consensus 102 ~l~~li~~~~~~g~~~iiits~~~p 126 (149)
T 2kjq_A 102 LLFSIFNRFRNSGKGFLLLGSEYTP 126 (149)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESSCT
T ss_pred HHHHHHHHHHHcCCcEEEEECCCCH
Confidence 899999998877888 899999654
No 136
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.42 E-value=1.1e-13 Score=141.13 Aligned_cols=181 Identities=14% Similarity=0.130 Sum_probs=96.2
Q ss_pred EEEECCCCCcHHHHHHHHhc-CCCCcccEEEECCEeCCh--hccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCH
Q 010509 80 LAMLGPSGCGKTTLLTALGG-RLGRINGRITYNGKPFSN--QMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTE 156 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g-~~~~~~G~I~~~G~~~~~--~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~ 156 (508)
+.|.||||+|||||+++|++ +..+..|++.++|.+... ..+..+++++|.+.+.-..+ + . .....
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-------~---~~~~~ 106 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D-------M---GNNDR 106 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC----------------CCH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHh--h-------c---CCcch
Confidence 89999999999999999999 678899999999987642 22456888888764321110 0 0 00011
Q ss_pred HHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC
Q 010509 157 KEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANG 236 (508)
Q Consensus 157 ~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~ 236 (508)
. .+++.++.+.-....+... .+|| +..+|+++++|||++ ||+.++..+++.|.+.. .
T Consensus 107 ~----~~~~~i~~~~~~~~~~~~~------~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~-~ 163 (354)
T 1sxj_E 107 I----VIQELLKEVAQMEQVDFQD------SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYS-K 163 (354)
T ss_dssp H----HHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHST-T
T ss_pred H----HHHHHHHHHHHhccccccc------cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhc-C
Confidence 1 2233333332111111111 3566 788999999999999 99999999999998864 3
Q ss_pred CCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcCh--hhHHHHHH----hcCCCCCCCCChHHHHHHhhcC
Q 010509 237 GRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEA--SGAMNYFA----SIGYCPSVPTNPSDFLLDLASG 302 (508)
Q Consensus 237 g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~--~~~~~~f~----~~g~~~p~~~npad~~~~~~~~ 302 (508)
+.++|+++|++......+-+|. ..+...++ +++.++.. ..|...+. ..-.+.+.+...+
T Consensus 164 ~~~~Il~t~~~~~l~~~l~sR~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~l~~i~~~~~G 228 (354)
T 1sxj_E 164 NIRLIMVCDSMSPIIAPIKSQC------LLIRCPAPSDSEISTILSDVVTNERIQLET-KDILKRIAQASNG 228 (354)
T ss_dssp TEEEEEEESCSCSSCHHHHTTS------EEEECCCCCHHHHHHHHHHHHHHHTCEECC-SHHHHHHHHHHTT
T ss_pred CCEEEEEeCCHHHHHHHHHhhc------eEEecCCcCHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHcCC
Confidence 6899999999875333333433 34444443 34444443 33443220 1234555555543
No 137
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.42 E-value=3e-14 Score=149.80 Aligned_cols=167 Identities=15% Similarity=0.136 Sum_probs=99.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHH--
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVF-- 144 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~-- 144 (508)
-+++++++++|+.++|+|+|||||||||++|+|..+ .+.+.+.+. ....+++|.+++. ..+++.++.-+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT-l~p~~G~V~~~~~--~~~~l~DtpGli~ 217 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT-LSPNLGVVEVSEE--ERFTLADIPGIIE 217 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS-SCCEEEEEECSSS--CEEEEEECCCCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce-ecceeeEEEecCc--ceEEEEecccccc
Confidence 479999999999999999999999999999999843 233333221 2233555555430 01111111000
Q ss_pred HHHhcCCCCCCHHHH--HHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 010509 145 TALLQLPNSFTEKEK--IKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTI 222 (508)
Q Consensus 145 ~~~l~~~~~~~~~~~--~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~ 222 (508)
.+.. ......... .++++.++..+++. +.. ...+|+||+||+.+|++|+.+|.++++ +++|...
T Consensus 218 ~a~~--~~~L~~~fl~~~era~~lL~vvDls---~~~-----~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~ 283 (416)
T 1udx_A 218 GASE--GKGLGLEFLRHIARTRVLLYVLDAA---DEP-----LKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLE 283 (416)
T ss_dssp CGGG--SCCSCHHHHHHHTSSSEEEEEEETT---SCH-----HHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSC
T ss_pred chhh--hhhhhHHHHHHHHHHHhhhEEeCCc---cCC-----HHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhh
Confidence 0000 001111110 11122333334443 222 347999999999999999999999999 9999987
Q ss_pred HHHHHHHHHHH-HcCCCEEEEEecCcchHHHhhccE
Q 010509 223 AQQILSILLKL-ANGGRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 223 ~~~i~~~L~~l-~~~g~tii~s~H~~~~~~~~~~D~ 257 (508)
+ ..++.+++. .+.|.+++.+|..-..-+.++++.
T Consensus 284 ~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~ 318 (416)
T 1udx_A 284 E-EAVKALADALAREGLAVLPVSALTGAGLPALKEA 318 (416)
T ss_dssp H-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHH
T ss_pred H-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHH
Confidence 7 455555544 445777666554333345555553
No 138
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.39 E-value=1.6e-14 Score=145.02 Aligned_cols=128 Identities=16% Similarity=0.206 Sum_probs=88.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHH----hc-
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTAL----LQ- 149 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~----l~- 149 (508)
+++.+++|.|+||||||||.+.|++.+.+. | . .++.+.+|+||+.+++. +.++++.+... +.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~-----~~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~ 95 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G-----GEKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQG 95 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G-----GGSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C-----CCceEEEeccccccCCh-HHHHHHhccccccchhhh
Confidence 478899999999999999999999987542 2 0 13456677999988865 88899877521 11
Q ss_pred --CCCCCCHHHHHHHHHHHHHHcCCC--cc--cccccCCCCCCccCHHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHH
Q 010509 150 --LPNSFTEKEKIKCAEAVMTELGLS--EC--KNSLIGGPLTRGVSGGERKRVSIG--QEILINPSLLFLDEPTSGLDST 221 (508)
Q Consensus 150 --~~~~~~~~~~~~~v~~~l~~lgL~--~~--~~~~vg~~~~~~LSGGerqRv~Ia--~aL~~~P~illLDEPtsgLD~~ 221 (508)
.|.... .+...+.++.+.-. .. ....+. .+.+.+||||+||+.+| +++ +|+|+|+|||++++|+.
T Consensus 96 ~g~p~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p-~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~ 168 (290)
T 1odf_A 96 RGLPGTHD----MKLLQEVLNTIFNNNEHPDQDTVVLP-KYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPI 168 (290)
T ss_dssp SCSTTSBC----HHHHHHHHHHHTC------CCEEEEC-CEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCC
T ss_pred ccCcchhH----HHHHHHHHHHhhccCccccCcceeec-cCccccCCccccccccccceEc--CCCEEEEeCccccCCcc
Confidence 132222 23455566665332 00 111111 23468999999999997 454 99999999999999985
Q ss_pred H
Q 010509 222 I 222 (508)
Q Consensus 222 ~ 222 (508)
.
T Consensus 169 ~ 169 (290)
T 1odf_A 169 L 169 (290)
T ss_dssp C
T ss_pred c
Confidence 3
No 139
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.38 E-value=6.1e-16 Score=166.80 Aligned_cols=177 Identities=12% Similarity=0.057 Sum_probs=110.7
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe-CChhccccEEEEecCCCCCCCCCHHHHH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP-FSNQMTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~-~~~~~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
..+++++++.+++|+.++|+|||||||||||++|+|+++|++|.|++.|.+ +.....+.++++.|........|..+.+
T Consensus 247 ~~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l 326 (511)
T 2oap_1 247 SGVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLL 326 (511)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHH
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHH
Confidence 457899999999999999999999999999999999999999999999865 2211233466666543322223444443
Q ss_pred HHHHHhcCC-----CCCCHHHHHH------------------HHHHHHHHcCC-----Cc----ccccccCCCCCCccCH
Q 010509 143 VFTALLQLP-----NSFTEKEKIK------------------CAEAVMTELGL-----SE----CKNSLIGGPLTRGVSG 190 (508)
Q Consensus 143 ~~~~~l~~~-----~~~~~~~~~~------------------~v~~~l~~lgL-----~~----~~~~~vg~~~~~~LSG 190 (508)
..+.+.+ | ......+... .++++++.+.. .. ..+..+ .....+||
T Consensus 327 ~~~LR~~-PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi--~~~~~~s~ 403 (511)
T 2oap_1 327 RAALRQR-PDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIAL--VQTMWVRG 403 (511)
T ss_dssp HTTGGGC-CSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEE--EEEEEESS
T ss_pred HHhhccC-CCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEE--EEEEEEeC
Confidence 3222111 1 0011011100 12233333322 11 111000 11235799
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEE--EecCcchHHHhhcc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVM--TIHQPSNMLYYMFH 256 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~--s~H~~~~~~~~~~D 256 (508)
|||||..++. + | |+|||+.....+++.+.++.++|+|+++ ++|+++. +...++
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~e-i~~~~g 458 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEK-MADFLG 458 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHH-HHHHHT
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHH-HHHHcC
Confidence 9999877651 2 7 9999998888888888877767899985 8999864 555543
No 140
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.37 E-value=2.1e-12 Score=135.17 Aligned_cols=156 Identities=15% Similarity=0.229 Sum_probs=91.2
Q ss_pred eece-EEEEeCCeEEEEECCCCCcHHHHHHHH--hcCCCCccc-----EEEECCEeCChhccccEEEEecCCCCCCCCCH
Q 010509 67 LKGI-TGMVKPGEMLAMLGPSGCGKTTLLTAL--GGRLGRING-----RITYNGKPFSNQMTRNTGFVTQEDVLSPYLTV 138 (508)
Q Consensus 67 L~~v-s~~v~~Ge~~ailG~nGsGKSTLL~~L--~g~~~~~~G-----~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv 138 (508)
|+.+ .+-+++|++++|+||||||||||++.| .+..++..| .++++++... ..
T Consensus 167 LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~--------------------~~ 226 (400)
T 3lda_A 167 LDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTF--------------------RP 226 (400)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCC--------------------CH
T ss_pred HHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCcc--------------------CH
Confidence 4443 367999999999999999999999954 566665444 5566554310 00
Q ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCH-HHHHHHHHHHHHh--hCCCEEEEeCCC
Q 010509 139 TETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSG-GERKRVSIGQEIL--INPSLLFLDEPT 215 (508)
Q Consensus 139 ~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSG-GerqRv~Ia~aL~--~~P~illLDEPt 215 (508)
.........+. ...+ .+++.+ .+. +..++ .+.+.+.-+.+++ .+|+++++|||+
T Consensus 227 ~rl~~~a~~~g----l~~~-------~vleni--------~~~----~~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t 283 (400)
T 3lda_A 227 VRLVSIAQRFG----LDPD-------DALNNV--------AYA----RAYNADHQLRLLDAAAQMMSESRFSLIVVDSVM 283 (400)
T ss_dssp HHHHHHHHHTT----CCHH-------HHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETGG
T ss_pred HHHHHHHHHcC----CChH-------hHhhcE--------EEe----ccCChHHHHHHHHHHHHHHHhcCCceEEecchh
Confidence 00000000110 1110 111111 111 11222 1233333333333 469999999999
Q ss_pred CCCCHHHH------------HHHHHHHHHHHcC-CCEEEEEecCcc------------------hHHHhhccEEEEEeCC
Q 010509 216 SGLDSTIA------------QQILSILLKLANG-GRTIVMTIHQPS------------------NMLYYMFHKVLLLSEG 264 (508)
Q Consensus 216 sgLD~~~~------------~~i~~~L~~l~~~-g~tii~s~H~~~------------------~~~~~~~D~v~lL~~G 264 (508)
+.+|+... .++++.|++++++ |.|||+++|... ..+.+.+|.++.|+++
T Consensus 284 ~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 284 ALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp GGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 99997543 6788889998765 999999999821 2356788999999876
Q ss_pred e
Q 010509 265 Y 265 (508)
Q Consensus 265 ~ 265 (508)
+
T Consensus 364 ~ 364 (400)
T 3lda_A 364 K 364 (400)
T ss_dssp S
T ss_pred C
Confidence 3
No 141
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.37 E-value=8.9e-16 Score=161.57 Aligned_cols=132 Identities=15% Similarity=0.166 Sum_probs=94.6
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--------hccccEEEEe--------
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--------QMTRNTGFVT-------- 127 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--------~~~~~i~yv~-------- 127 (508)
+.+|+++ + .++|++++|+|||||||||||++|+|.+.+.+|+|.+.|.++.. ..++.+++.+
T Consensus 156 ~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~L 233 (418)
T 1p9r_A 156 HDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAIL 233 (418)
T ss_dssp HHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHG
T ss_pred HHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHh
Confidence 3467777 4 38999999999999999999999999998889999999887632 1233455654
Q ss_pred -cCCCC--CCC----CCHHHHHHHHHHhc-----CCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 128 -QEDVL--SPY----LTVTETMVFTALLQ-----LPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 128 -Q~~~l--~~~----lTv~E~l~~~~~l~-----~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
|++.. ++. .|+.+++.++.... +... +. .+.++ .|..+|+.+.. .. ..|||||+||
T Consensus 234 rq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~-~~---~~~i~-rL~~lgl~~~~--~~-----~~LSgg~~QR 301 (418)
T 1p9r_A 234 RQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTN-TA---VGAVT-RLRDMGIEPFL--IS-----SSLLGVLAQR 301 (418)
T ss_dssp GGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCS-SS---HHHHH-HHHHHTCCHHH--HH-----HHEEEEEEEE
T ss_pred ccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchh-hH---HHHHH-HHHHcCCcHHH--HH-----HHHHHHHHHH
Confidence 88764 344 58888887754211 1111 11 12223 46778887653 22 4899999999
Q ss_pred HHHHHHHhhCCCEEEE
Q 010509 196 VSIGQEILINPSLLFL 211 (508)
Q Consensus 196 v~Ia~aL~~~P~illL 211 (508)
||++|+.+|++..-
T Consensus 302 --LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 --LVRTLCPDCKEPYE 315 (418)
T ss_dssp --EEEEECTTTCEEEE
T ss_pred --hhhhhcCCCCccCC
Confidence 99999999998763
No 142
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.33 E-value=5.3e-16 Score=161.76 Aligned_cols=168 Identities=16% Similarity=0.186 Sum_probs=121.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhc------------CCCCcccEEEECCEeCCh-----hcccc---EEEEecCCCC
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGG------------RLGRINGRITYNGKPFSN-----QMTRN---TGFVTQEDVL 132 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g------------~~~~~~G~I~~~G~~~~~-----~~~~~---i~yv~Q~~~l 132 (508)
.+++|+.++|+|+||||||||+|+|+| ...|.+|.|.++|.++.. ..++. ..++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999 346889999999854321 11222 3477888888
Q ss_pred CCCCCHHHHH--HHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCC--CE
Q 010509 133 SPYLTVTETM--VFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINP--SL 208 (508)
Q Consensus 133 ~~~lTv~E~l--~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P--~i 208 (508)
++..+..|.+ .|.+.++. ++.++..++..+ +. ....+||+. +| ++
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~-----~i~~v~~~~------------dP~~di 144 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DA-----EIIHVEGDV------------DPIRDL 144 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TT-----CSSCCSSSS------------CHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cc-----eeeeecccc------------Ccchhh
Confidence 8887776655 44333321 111122222211 11 222466653 89 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHH-HcCCCEEEEEecCcchHHHhhccEEE-EEeCC-eEEEEcChhh
Q 010509 209 LFLDEPTSGLDSTIAQQILSILLKL-ANGGRTIVMTIHQPSNMLYYMFHKVL-LLSEG-YPLYSGEASG 274 (508)
Q Consensus 209 llLDEPtsgLD~~~~~~i~~~L~~l-~~~g~tii~s~H~~~~~~~~~~D~v~-lL~~G-~iv~~G~~~~ 274 (508)
+++|||+.++|+......++.++++ ++.|.|++ +|+.. .+.++||++. +|.+| ++++.|+.++
T Consensus 145 ~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~-~~~~l~~~i~~~L~~G~~~~~~~~~~~ 210 (392)
T 1ni3_A 145 SIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKK-EEQAIIEKVYQYLTETKQPIRKGDWSN 210 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHH-HHHHHHHHHHHHHHTTCSCGGGSCCCH
T ss_pred hhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHH-HHHHHHHHHHHHhccCCceeecCCCCH
Confidence 9999999999999999999999998 77788865 99976 5788999999 99999 9988887654
No 143
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.32 E-value=8e-15 Score=139.45 Aligned_cols=165 Identities=16% Similarity=0.137 Sum_probs=90.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNS 153 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~ 153 (508)
.++|++++|+||||||||||+++|+|++++. | ..+++|++++..++. +..+++........+..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g--------------~~~g~v~~d~~~~~~-~~~~~~~~~~~~~~~~~ 82 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G--------------LPAEVVPMDGFHLDN-RLLEPRGLLPRKGAPET 82 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T--------------CCEEEEESGGGBCCH-HHHGGGTCGGGTTSGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C--------------CceEEEecCCCcCCH-HHHHHhcccccCCCCch
Confidence 5799999999999999999999999988643 2 124555555443321 11111110000011111
Q ss_pred CCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHH-HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 010509 154 FTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIG-QEILINPSLLFLDEPTSGLDSTIAQQILSILLK 232 (508)
Q Consensus 154 ~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia-~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~ 232 (508)
..... ..+.++.+...+..+....+ ....+|+||+||++++ ++++.++.++++|||.. .+
T Consensus 83 ~~~~~----~~~~l~~l~~~~~i~~p~~d-~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~--------------~~ 143 (208)
T 3c8u_A 83 FDFEG----FQRLCHALKHQERVIYPLFD-RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW--------------RD 143 (208)
T ss_dssp BCHHH----HHHHHHHHHHCSCEEEEEEE-TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG--------------GG
T ss_pred hhHHH----HHHHHHHHhcCCceecccCC-ccccCCCCCceEEcCCCcEEEECCceeccCCchh--------------HH
Confidence 12211 22233332111111222221 1235799999999998 77888888888888731 11
Q ss_pred HHcCCCEEEEEecCcchHHHhhccEEEEEeCCeEEEEcChhhHHHHHH
Q 010509 233 LANGGRTIVMTIHQPSNMLYYMFHKVLLLSEGYPLYSGEASGAMNYFA 280 (508)
Q Consensus 233 l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~G~iv~~G~~~~~~~~f~ 280 (508)
+.+.--.++++.++....+.+...|. +..|+ +.+++.+.+.
T Consensus 144 l~~~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~~ 184 (208)
T 3c8u_A 144 LTAIWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARAQ 184 (208)
T ss_dssp GGGTCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHHH
T ss_pred HHHhcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHHH
Confidence 12222367777777665566666662 34454 5566665554
No 144
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.30 E-value=6.8e-15 Score=150.31 Aligned_cols=165 Identities=16% Similarity=0.154 Sum_probs=110.0
Q ss_pred cceeeeceEEEEeCC-------eEEEEECCCCCcHHHHHHHHhcCC----CCcccEEEECCEeCCh---h-ccccEEEEe
Q 010509 63 EKAILKGITGMVKPG-------EMLAMLGPSGCGKTTLLTALGGRL----GRINGRITYNGKPFSN---Q-MTRNTGFVT 127 (508)
Q Consensus 63 ~~~iL~~vs~~v~~G-------e~~ailG~nGsGKSTLL~~L~g~~----~~~~G~I~~~G~~~~~---~-~~~~i~yv~ 127 (508)
.+.+++++++.+++| +.++|.||||+|||||+++|+|.+ .+++|.+..++.++.. . .++.+.|+.
T Consensus 30 ~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iD 109 (334)
T 1in4_A 30 QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFID 109 (334)
T ss_dssp CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEE
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEc
Confidence 456889999999887 899999999999999999999987 5677877776665432 1 245799999
Q ss_pred cCCCCCCCCCHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCC
Q 010509 128 QEDVLSPYLTVTETMVFTALLQLPN-SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINP 206 (508)
Q Consensus 128 Q~~~l~~~lTv~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P 206 (508)
|.+.+.+ ++.|++.......... -.......+.++..++.++|.. +++.++ .||+|+|||+.++
T Consensus 110 E~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~-----~Ls~~l~sR~~l~------- 174 (334)
T 1in4_A 110 EIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSG-----LLSSPLRSRFGII------- 174 (334)
T ss_dssp TGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGG-----GSCHHHHTTCSEE-------
T ss_pred chhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcc-----cCCHHHHHhcCce-------
Confidence 9887766 7888885443221100 0011122234555666666655 555554 8999999998655
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccE
Q 010509 207 SLLFLDEPTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 207 ~illLDEPtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~ 257 (508)
.+||+.+..++.++|++.++. +. .|+++ .+..++++
T Consensus 175 ---------~~Ld~~~~~~l~~iL~~~~~~~~~-----~~~~~-~~~~ia~~ 211 (334)
T 1in4_A 175 ---------LELDFYTVKELKEIIKRAASLMDV-----EIEDA-AAEMIAKR 211 (334)
T ss_dssp ---------EECCCCCHHHHHHHHHHHHHHTTC-----CBCHH-HHHHHHHT
T ss_pred ---------eeCCCCCHHHHHHHHHHHHHHcCC-----CcCHH-HHHHHHHh
Confidence 788999999999999998753 42 46653 45555553
No 145
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.28 E-value=1.7e-13 Score=138.19 Aligned_cols=106 Identities=15% Similarity=0.160 Sum_probs=72.0
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEE---CCEeCChh---c-cccEEEEecCCC--------------
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITY---NGKPFSNQ---M-TRNTGFVTQEDV-------------- 131 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~---~G~~~~~~---~-~~~i~yv~Q~~~-------------- 131 (508)
++.+|++++|+||||||||||||+|+|+..|++|+|.+ +|++++.. . .+.+|||+|++.
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~ 244 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEEL 244 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHH
Confidence 44579999999999999999999999999999999999 89887531 1 236899999974
Q ss_pred --CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCC-cccccccCCCCCCccCH
Q 010509 132 --LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLS-ECKNSLIGGPLTRGVSG 190 (508)
Q Consensus 132 --l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~vg~~~~~~LSG 190 (508)
++|.+|+ ||+.|.. +.. ..+...+++++++.+||. +..+.+. +.||+
T Consensus 245 ~~l~~~~~~-~n~~~~~-~~~-----~~e~~~~v~~~l~~~~L~~~~~~~~~-----~~lse 294 (301)
T 1u0l_A 245 KHYFKEFGD-KQCFFSD-CNH-----VDEPECGVKEAVENGEIAESRYENYV-----KMFYE 294 (301)
T ss_dssp GGGSTTSSS-CCCSSTT-CCS-----SSCSSCHHHHHHHHTSSCHHHHHHHH-----HHHHH
T ss_pred HHHHHhccc-ccCcCCC-CcC-----CCCCCcHHHHHHHcCCCCHHHHHHHH-----HHHHH
Confidence 5888999 9887752 211 122345688999999995 6666554 36664
No 146
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.26 E-value=3.5e-13 Score=136.16 Aligned_cols=118 Identities=19% Similarity=0.219 Sum_probs=68.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEE---CCEeCCh--hc-cccEEEEecCCCCCC----CCCHHHH
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITY---NGKPFSN--QM-TRNTGFVTQEDVLSP----YLTVTET 141 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~---~G~~~~~--~~-~~~i~yv~Q~~~l~~----~lTv~E~ 141 (508)
+++.+|++++|+||||+|||||+|+|+|...+.+|+|.+ +|+..+. .. +...+|++|.+.+.+ .+|+ |+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 445689999999999999999999999999999999999 8877643 22 222799999987765 6899 88
Q ss_pred HH--HHH------HhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHH
Q 010509 142 MV--FTA------LLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKR 195 (508)
Q Consensus 142 l~--~~~------~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqR 195 (508)
+. |.. .++........+...+++++++.++|.+.+.... ..++.|++||
T Consensus 247 l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y-----~~lls~~~~~ 303 (307)
T 1t9h_A 247 LGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHY-----VEFMTEIKDR 303 (307)
T ss_dssp HGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHH-----HHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHH-----HHHHHHHhhc
Confidence 83 321 1121111111223356889999999987543333 2677787763
No 147
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.23 E-value=1.3e-13 Score=139.50 Aligned_cols=96 Identities=16% Similarity=0.256 Sum_probs=78.4
Q ss_pred eEEEEeEEEEEeccccccCcccccccceeeeceEEEE-------------------eCCeEEEEECCCCCcHHHHHHHHh
Q 010509 38 TLKFEDIVYKIKMKKGFYGSNKKIEEKAILKGITGMV-------------------KPGEMLAMLGPSGCGKTTLLTALG 98 (508)
Q Consensus 38 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v-------------------~~Ge~~ailG~nGsGKSTLL~~L~ 98 (508)
.|+++||++.| .++++++++.+ ++|+++||+||||||||||+++|+
T Consensus 37 ~i~~~~v~~~y---------------~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~ 101 (308)
T 1sq5_A 37 DLSLEEVAEIY---------------LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQ 101 (308)
T ss_dssp TCCHHHHHHTH---------------HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHH
T ss_pred ccchHhHHHHH---------------HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHH
Confidence 36677776654 24788888877 899999999999999999999999
Q ss_pred cCCC--CcccEEEE---CCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhc
Q 010509 99 GRLG--RINGRITY---NGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQ 149 (508)
Q Consensus 99 g~~~--~~~G~I~~---~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~ 149 (508)
|+++ |++|+|.+ +|.......++.++++ |+..+++.+|+.+++.+...++
T Consensus 102 ~~l~~~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 102 ALLSRWPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HHHTTSTTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HHHhhCCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 9887 89999999 8877654444567888 8777888899999998876553
No 148
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.23 E-value=1.7e-15 Score=150.79 Aligned_cols=128 Identities=20% Similarity=0.276 Sum_probs=91.2
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----hccccEEEEecCC-CCCCCCC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTRNTGFVTQED-VLSPYLT 137 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~-~l~~~lT 137 (508)
...+++++++.+++| ++|.||||||||||+++|+|..++ |.|.++|.++.. +..+.+++++|+. ...|.++
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~ 107 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVI 107 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeE
Confidence 456899999999999 999999999999999999998766 789999987642 2344577788764 4556666
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010509 138 VTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS 216 (508)
Q Consensus 138 v~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPts 216 (508)
+.|++......+ ... ..+ .+.+..++.+ ..|||||+||+.|++++.++|++| |||+.
T Consensus 108 ~~Deid~~~~~r-----~~~----~~~------~~~~~~~~~l-----~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~ 164 (274)
T 2x8a_A 108 FFDEVDALCPRR-----SDR----ETG------ASVRVVNQLL-----TEMDGLEARQQVFIMAATNRPDII--DPAIL 164 (274)
T ss_dssp EEETCTTTCC------------------------CTTHHHHHH-----HHHHTCCSTTCEEEEEEESCGGGS--CHHHH
T ss_pred eeehhhhhhccc-----CCC----cch------HHHHHHHHHH-----HhhhcccccCCEEEEeecCChhhC--CHhhc
Confidence 666665422110 000 000 1223334443 379999999999999999999985 99864
No 149
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.22 E-value=6.9e-16 Score=146.12 Aligned_cols=150 Identities=19% Similarity=0.261 Sum_probs=81.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCC-------------CcccEEEECCEeCC---h-hccccEEEEecCCCCCCCCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLG-------------RINGRITYNGKPFS---N-QMTRNTGFVTQEDVLSPYLT 137 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~-------------~~~G~I~~~G~~~~---~-~~~~~i~yv~Q~~~l~~~lT 137 (508)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.+.. . .+++.+ .|+..++ ..+
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~-~~~ 75 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIE-HAE 75 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEE-EEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEe-eee
Confidence 5899999999999999999999999764 45565 3554331 1 122221 2322221 122
Q ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHH----HHHHHH-HHhhCCCEEEEe
Q 010509 138 VTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERK----RVSIGQ-EILINPSLLFLD 212 (508)
Q Consensus 138 v~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerq----Rv~Ia~-aL~~~P~illLD 212 (508)
+.+|+ + +.+.++ ++++++. +-....+. ++ .|-++ ++ .++ +++.+|++++||
T Consensus 76 ~~~n~-~--------g~~~~~----i~~~~~~-~~~~~~~~--------~~-~g~~~~~~~~~-~~~~~~l~~p~~~ild 131 (198)
T 1lvg_A 76 FSGNL-Y--------GTSKEA----VRAVQAM-NRICVLDV--------DL-QGVRSIKKTDL-CPIYIFVQPPSLDVLE 131 (198)
T ss_dssp ETTEE-E--------EEEHHH----HHHHHHT-TCEEEEEC--------CH-HHHHHHTTSSC-CCEEEEEECSCHHHHH
T ss_pred ecCcc-C--------CCCHHH----HHHHHHc-CCcEEEEC--------CH-HHHHHHHhcCC-CcEEEEEeCCCHHHHH
Confidence 22222 1 112222 3333332 10000110 00 01111 11 344 677788888889
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEEEeC
Q 010509 213 EPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLLLSE 263 (508)
Q Consensus 213 EPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~lL~~ 263 (508)
|+|+++|..+...+.+.|.+..++ +...|.+ ..+|+++++++
T Consensus 132 e~~~~~d~~~e~~i~~~l~~~~~~----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 132 QRLRLRNTETEESLAKRLAAARTD----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHH----TTGGGST-----TTCSEEEECSS
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHH----HHHhhcc-----CCceEEEECCC
Confidence 999999999999999998887543 1234521 45899887764
No 150
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=99.17 E-value=1.4e-12 Score=125.64 Aligned_cols=60 Identities=17% Similarity=0.177 Sum_probs=45.5
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHHH-cCCCEEEEEecCcchH-------HHhhccEEEEEeC
Q 010509 204 INPSLLFLDEPTSGL--DSTIAQQILSILLKLA-NGGRTIVMTIHQPSNM-------LYYMFHKVLLLSE 263 (508)
Q Consensus 204 ~~P~illLDEPtsgL--D~~~~~~i~~~L~~l~-~~g~tii~s~H~~~~~-------~~~~~D~v~lL~~ 263 (508)
.+|+++++|||++.+ |+....+.+..|.+++ +.|.|||+++|..... +.+.+|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 6655566666666665 5699999999987531 4577899999974
No 151
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.13 E-value=2.4e-11 Score=122.70 Aligned_cols=114 Identities=14% Similarity=0.170 Sum_probs=81.9
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHh
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALL 148 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l 148 (508)
.+++..++|++++|+|||||||||+++.|++.+.+..|+|.+.+.+..+. ...|
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~------------------~a~e-------- 149 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA------------------AAIE-------- 149 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH------------------HHHH--------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH------------------HHHH--------
Confidence 34556789999999999999999999999999877778888877654210 0011
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHH---HHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 010509 149 QLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRV---SIGQEILINPSLLFLDEPTSGLDSTIAQQ 225 (508)
Q Consensus 149 ~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv---~Ia~aL~~~P~illLDEPtsgLD~~~~~~ 225 (508)
..+.+.+.+|+... ...|||+.+++ ++++++..+|+++++|||.. ......
T Consensus 150 -------------qL~~~~~~~gl~~~----------~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~ 203 (306)
T 1vma_A 150 -------------QLKIWGERVGATVI----------SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKN 203 (306)
T ss_dssp -------------HHHHHHHHHTCEEE----------CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHH
T ss_pred -------------HHHHHHHHcCCcEE----------ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHH
Confidence 12234445565421 25689999999 89999999999999999974 334455
Q ss_pred HHHHHHHHH
Q 010509 226 ILSILLKLA 234 (508)
Q Consensus 226 i~~~L~~l~ 234 (508)
+++.|+++.
T Consensus 204 l~~eL~~l~ 212 (306)
T 1vma_A 204 LMEELRKVH 212 (306)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555543
No 152
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=99.11 E-value=1.9e-11 Score=130.00 Aligned_cols=179 Identities=12% Similarity=0.083 Sum_probs=113.0
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCccc-EEEECCEeCCh-hcc-ccEEEEecCCCCCCCCCHHH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING-RITYNGKPFSN-QMT-RNTGFVTQEDVLSPYLTVTE 140 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G-~I~~~G~~~~~-~~~-~~i~yv~Q~~~l~~~lTv~E 140 (508)
-..|+++++-+++|+++.|.|+||+|||||+..+++...+..| .|.+.+.+.+. ... +..+...+ ... +
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~~~l~~r~~~~~~~-------~~~-~ 261 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGN-------INA-Q 261 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCHHHHHHHHHHHHHT-------CCH-H
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCHHHHHHHHHHHHcC-------CCH-H
Confidence 4578888888999999999999999999999999986543333 34443322221 110 00000000 000 0
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCC
Q 010509 141 TMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL--INPSLLFLDEPTSGL 218 (508)
Q Consensus 141 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~--~~P~illLDEPtsgL 218 (508)
. ++. ...+.++ .+++.+.++.++..+..-.. ..++|.+|.+ +.++.++ .+|+++++|+++...
T Consensus 262 ~------l~~-g~l~~~~-~~~~~~a~~~l~~~~l~i~d-----~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 262 N------LRT-GKLTPED-WGKLTMAMGSLSNAGIYIDD-----TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp H------HHT-SCCCHHH-HHHHHHHHHHHHSSCEEEEC-----CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSC
T ss_pred H------Hhc-CCCCHHH-HHHHHHHHHHHhcCCEEEEC-----CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhc
Confidence 0 111 1233333 34556666666544332111 1378999987 5667776 689999999999877
Q ss_pred C--------HHHHHHHHHHHHHHHcC-CCEEEEEec---------C--cc-------hHHHhhccEEEEEeCCe
Q 010509 219 D--------STIAQQILSILLKLANG-GRTIVMTIH---------Q--PS-------NMLYYMFHKVLLLSEGY 265 (508)
Q Consensus 219 D--------~~~~~~i~~~L~~l~~~-g~tii~s~H---------~--~~-------~~~~~~~D~v~lL~~G~ 265 (508)
+ .....++.+.|+.++++ |.+||+++| + |. ..+.+.+|.|++|+.++
T Consensus 327 ~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 327 GSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDD 400 (454)
T ss_dssp CSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccc
Confidence 4 23446788888888865 999999999 2 42 14678899999998665
No 153
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.06 E-value=3.3e-10 Score=113.79 Aligned_cols=127 Identities=14% Similarity=0.119 Sum_probs=89.2
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHH
Q 010509 68 KGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTAL 147 (508)
Q Consensus 68 ~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~ 147 (508)
++++++ +|++++++|+||+||||+++.|++.+.+..|+|.+.+.+...... + +.+
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~-----------------~-~ql----- 145 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAA-----------------R-EQL----- 145 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHH-----------------H-HHH-----
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhH-----------------H-HHH-----
Confidence 678887 999999999999999999999999987778899888776532100 0 000
Q ss_pred hcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCC-CCCCCHHHHHHH
Q 010509 148 LQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEP-TSGLDSTIAQQI 226 (508)
Q Consensus 148 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEP-tsgLD~~~~~~i 226 (508)
..+.+..|+..... + .+-+..+.+|.+|+.+...+++++++||| ++++|.....++
T Consensus 146 ----------------~~~~~~~~l~~~~~---~----~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l 202 (295)
T 1ls1_A 146 ----------------RLLGEKVGVPVLEV---M----DGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGEL 202 (295)
T ss_dssp ----------------HHHHHHHTCCEEEC---C----TTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHH
T ss_pred ----------------HHhcccCCeEEEEc---C----CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHH
Confidence 01123345543211 0 01234456788999888899999999999 999999888888
Q ss_pred HHHHHHHHcCCCEEEEE
Q 010509 227 LSILLKLANGGRTIVMT 243 (508)
Q Consensus 227 ~~~L~~l~~~g~tii~s 243 (508)
.+..+.+.. ..+++++
T Consensus 203 ~~~~~~~~~-~~~~lv~ 218 (295)
T 1ls1_A 203 ARLKEVLGP-DEVLLVL 218 (295)
T ss_dssp HHHHHHHCC-SEEEEEE
T ss_pred HHHhhhcCC-CEEEEEE
Confidence 888776642 3344433
No 154
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=99.04 E-value=9.3e-12 Score=133.64 Aligned_cols=174 Identities=14% Similarity=0.131 Sum_probs=108.7
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhc--CCCCcccEEEECCEeCCh-hccccEEEEecCCCCCCCC--CHHHHHH
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGG--RLGRINGRITYNGKPFSN-QMTRNTGFVTQEDVLSPYL--TVTETMV 143 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g--~~~~~~G~I~~~G~~~~~-~~~~~i~yv~Q~~~l~~~l--Tv~E~l~ 143 (508)
.+++++.++..++|.|++||||||+|+.|.. +.....|++.+.+.|.+. ++. ....+|++ +|.++..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~--------~~~~lPhl~~~Vvtd~~ 230 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELS--------VYEGIPHLLTEVVTDMK 230 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGG--------GGTTCTTBSSSCBCSHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhh--------hhccCCcccceeecCHH
Confidence 4778889999999999999999999999876 345566788777776542 111 00111111 1211221
Q ss_pred HHH-HhcCCCCCCHHHHHHHHHHHHHHcCCCccccc--ccCCCCCCccCHHHHHHH----------HHHHHHhhCCC-EE
Q 010509 144 FTA-LLQLPNSFTEKEKIKCAEAVMTELGLSECKNS--LIGGPLTRGVSGGERKRV----------SIGQEILINPS-LL 209 (508)
Q Consensus 144 ~~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~--~vg~~~~~~LSGGerqRv----------~Ia~aL~~~P~-il 209 (508)
.+. .++ ...++.++|. ++++..|+.+..+- .+. ..+||||+||. .+++++...|. ++
T Consensus 231 ~a~~~L~----~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~----~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl 301 (512)
T 2ius_A 231 DAANALR----WCVNEMERRY-KLMSALGVRNLAGYNEKIA----EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV 301 (512)
T ss_dssp HHHHHHH----HHHHHHHHHH-HHHHHTTCSSHHHHHHHHH----HHHHTTCCCBCTTC---------CCBCCCCCEEEE
T ss_pred HHHHHHH----HHHHHHHHHH-HHHHHcCCccHHHHHHHHH----HHhhcCCcccccccccccchhccccccccCCcEEE
Confidence 111 111 1123444554 67888898765431 121 25789988753 34556677887 89
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHcC----CCEEEEEecCcch------HHHhhccEEEE
Q 010509 210 FLDEPTSGLDSTIAQQILSILLKLANG----GRTIVMTIHQPSN------MLYYMFHKVLL 260 (508)
Q Consensus 210 lLDEPtsgLD~~~~~~i~~~L~~l~~~----g~tii~s~H~~~~------~~~~~~D~v~l 260 (508)
++||++.-+|.. ...+.+.+.++++. |.++|++||+|+. ...++.+||.+
T Consensus 302 vIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 302 LVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp EEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred EEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 999999988843 34566666666432 7899999999972 22355567665
No 155
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.04 E-value=6.1e-11 Score=126.44 Aligned_cols=52 Identities=13% Similarity=0.022 Sum_probs=49.0
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCC
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFS 116 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~ 116 (508)
..+|+|+|+++++ |+++|+|||||||||||++|+|+++|++|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSC
T ss_pred cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcc
Confidence 4579999999999 999999999999999999999999999999999998764
No 156
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=99.01 E-value=2.9e-10 Score=116.86 Aligned_cols=148 Identities=22% Similarity=0.346 Sum_probs=89.1
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCC
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLP 151 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~ 151 (508)
+-+++|+++.|.||||+|||||+..++.......| .+.|+.-+....+ + .+
T Consensus 56 GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~---------------~vlyi~~E~~~~~-----~---~a------ 106 (349)
T 2zr9_A 56 GGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGG---------------IAAFIDAEHALDP-----E---YA------ 106 (349)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTC---------------CEEEEESSCCCCH-----H---HH------
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC---------------eEEEEECCCCcCH-----H---HH------
Confidence 47899999999999999999998888764321112 2445554422111 0 01
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhC--CCEEEEeCCCCCC----------C
Q 010509 152 NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILIN--PSLLFLDEPTSGL----------D 219 (508)
Q Consensus 152 ~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~--P~illLDEPtsgL----------D 219 (508)
+.+|+.. .+-.+- ...+. .+-+.++++++.+ |+++++|||++.+ |
T Consensus 107 ----------------~~lG~~~-~~l~i~----~~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd 163 (349)
T 2zr9_A 107 ----------------KKLGVDT-DSLLVS----QPDTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGD 163 (349)
T ss_dssp ----------------HHTTCCG-GGCEEE----CCSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC---
T ss_pred ----------------HHcCCCH-HHeEEe----cCCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhcccccc
Confidence 1122211 010111 01232 3345678888765 9999999999998 3
Q ss_pred H---HHHHHHHHHHHHH----HcCCCEEEEEecCcch---------------HHHhhccEEEEEeCCeEEEEcC
Q 010509 220 S---TIAQQILSILLKL----ANGGRTIVMTIHQPSN---------------MLYYMFHKVLLLSEGYPLYSGE 271 (508)
Q Consensus 220 ~---~~~~~i~~~L~~l----~~~g~tii~s~H~~~~---------------~~~~~~D~v~lL~~G~iv~~G~ 271 (508)
+ ..+..+.+.+++| .+.|.|||+++|.... .+...+|.++.+..++++..|+
T Consensus 164 ~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 164 SHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp -CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred chhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 3 2223445555555 3459999999996431 2567899999998877665554
No 157
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.00 E-value=3.3e-10 Score=113.86 Aligned_cols=157 Identities=15% Similarity=0.138 Sum_probs=96.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF 154 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~ 154 (508)
++|++++++||||+||||+++.|++.+.+.+| +.+.++.+|.. ..+..|.+...+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--------------~~V~lv~~D~~---r~~a~eqL~~~~-------- 157 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--------------KKIAFITTDTY---RIAAVEQLKTYA-------- 157 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--------------CCEEEEECCCS---STTHHHHHHHHH--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--------------CEEEEEecCcc---cchHHHHHHHHH--------
Confidence 47999999999999999999999998866556 24666666642 235556554322
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 010509 155 TEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA 234 (508)
Q Consensus 155 ~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~ 234 (508)
+..|+.... ..+. +.-+.+++ .+.+|+++|+| |+|+|+.....+.++.+-+.
T Consensus 158 -------------~~~gl~~~~----------~~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 158 -------------ELLQAPLEV----------CYTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp -------------TTTTCCCCB----------CSSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred -------------HhcCCCeEe----------cCCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 112332110 1122 23345555 45999999999 99999876655544443332
Q ss_pred ---cCCCEEEE-EecCcchHHHhhccEEEEEeCCeEEEEcC-----hhhHHHHHHhcCCC
Q 010509 235 ---NGGRTIVM-TIHQPSNMLYYMFHKVLLLSEGYPLYSGE-----ASGAMNYFASIGYC 285 (508)
Q Consensus 235 ---~~g~tii~-s~H~~~~~~~~~~D~v~lL~~G~iv~~G~-----~~~~~~~f~~~g~~ 285 (508)
..+.++++ ++|+.. .+.+.+|++..+..+.++...- ...+.+.....|.+
T Consensus 210 ~~~~~~~~lVl~at~~~~-~~~~~~~~~~~l~~~giVltk~D~~~~~g~~~~~~~~~~~p 268 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYE-DMKHIVKRFSSVPVNQYIFTKIDETTSLGSVFNILAESKIG 268 (296)
T ss_dssp CCTTEEEEEEEETTBCHH-HHHHHTTTTSSSCCCEEEEECTTTCSCCHHHHHHHHTCSCC
T ss_pred hcCCCeEEEEEECCCCHH-HHHHHHHHHhcCCCCEEEEeCCCcccchhHHHHHHHHHCcC
Confidence 12334555 488864 5667777766666677765421 12445555555544
No 158
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=98.99 E-value=1.2e-13 Score=137.18 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=85.2
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----hccccEEEEecCCC-CCCCCC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTRNTGFVTQEDV-LSPYLT 137 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~-l~~~lT 137 (508)
...+++++++.+++| ++|+||||+|||||+++|++... .|.|.++|.++.. ...+.+++++|+.. ..|.++
T Consensus 61 ~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 136 (278)
T 1iy2_A 61 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 136 (278)
T ss_dssp CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEE
Confidence 356789999999999 89999999999999999999875 7899999876522 22344667777643 566777
Q ss_pred HHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCE
Q 010509 138 VTETMVFTALLQLPN-SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSL 208 (508)
Q Consensus 138 v~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~i 208 (508)
+.|++......+... ....++..+.+.+++ ..|||||+||+.+++++..+|++
T Consensus 137 ~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------------~~lsgg~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 137 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------------VEMDGFEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp EEETHHHHHCC--------CHHHHHHHHHHH------------------HHHTTCCTTCCEEEEEEESCTTS
T ss_pred ehhhhHhhhcccccccCCcchHHHHHHHHHH------------------HHHhCCCCCCCEEEEEecCCchh
Confidence 878775432211100 001112223333332 26899999999999999999976
No 159
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.97 E-value=6.1e-12 Score=138.43 Aligned_cols=160 Identities=16% Similarity=0.155 Sum_probs=101.9
Q ss_pred ccceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcc-cEEEECCEeCChhccccEEEEecCCC---------
Q 010509 62 EEKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRIN-GRITYNGKPFSNQMTRNTGFVTQEDV--------- 131 (508)
Q Consensus 62 ~~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~-G~I~~~G~~~~~~~~~~i~yv~Q~~~--------- 131 (508)
+...+++++++.+++|+.++|+||||+|||||+++|++..++.. |.+.+++.+... ....++++++...
T Consensus 45 G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~-~~p~i~~~p~g~~~~~~e~~~~ 123 (604)
T 3k1j_A 45 GQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE-NMPRIKTVPACQGRRIVEKYRE 123 (604)
T ss_dssp SCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT-TSCEEEEEETTHHHHHHHHHHH
T ss_pred CchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc-cCCcEEEEecchHHHHHHHHHH
Confidence 34678999999999999999999999999999999999987766 888888876543 3446888887421
Q ss_pred -------------CCCCCCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHH
Q 010509 132 -------------LSPYLTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSI 198 (508)
Q Consensus 132 -------------l~~~lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~I 198 (508)
.+..+++.+|+........+...-. + .....-+.+|..+..... ..++|+|++|++..
T Consensus 124 ~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~---~~~~~~~L~G~~~~~~~~-----~g~~~~g~~~~i~~ 194 (604)
T 3k1j_A 124 KAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-A---TGAHAGALLGDVRHDPFQ-----SGGLGTPAHERVEP 194 (604)
T ss_dssp HHHHHTCC-----------CCCEEEECCTTCSSCCEEE-C---TTCCHHHHHCEECCCCC---------CCCCGGGGEEC
T ss_pred hhccchhhhhhcccccccccccceeeccccCCCCCEEE-c---CCCCHHhcCceEEechhh-----cCCccccccccccC
Confidence 1111111111110000000000000 0 000011122222111111 13799999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 010509 199 GQEILINPSLLFLDEPTSGLDSTIAQQILSILLK 232 (508)
Q Consensus 199 a~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~ 232 (508)
+.....++.+||+||... |++..+..+.+.|.+
T Consensus 195 g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 195 GMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp CHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 999999999999999988 899999888888875
No 160
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.96 E-value=1.7e-13 Score=133.87 Aligned_cols=129 Identities=16% Similarity=0.225 Sum_probs=87.1
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----hccccEEEEecCC-CCCCCCC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTRNTGFVTQED-VLSPYLT 137 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~-~l~~~lT 137 (508)
...+++++++.+++| ++|.||||+|||||+++|++... .|.+.++|.++.. ...+.+++++|+. ...|.++
T Consensus 37 ~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~ 112 (254)
T 1ixz_A 37 NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIV 112 (254)
T ss_dssp CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEE
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEE
Confidence 346789999999999 89999999999999999999875 7889998876522 2234466777764 3556677
Q ss_pred HHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCC
Q 010509 138 VTETMVFTALLQLPN-SFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPT 215 (508)
Q Consensus 138 v~E~l~~~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPt 215 (508)
+.|++......+... ....++..+.+.+++. .|||||+||+.+++++..+|++ +|++.
T Consensus 113 ~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~------------------~l~g~~~~~~~i~~a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 113 FIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPAL 171 (254)
T ss_dssp EEETHHHHHC---------CHHHHHHHHHHHH------------------HHHTCCTTCCEEEEEEESCGGG--SCGGG
T ss_pred EehhhhhhhcccCccccccchHHHHHHHHHHH------------------HHhCCCCCCCEEEEEccCCchh--CCHHH
Confidence 777774332211100 0011222233333322 6899999999999999999987 56553
No 161
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.95 E-value=3.1e-11 Score=113.22 Aligned_cols=69 Identities=16% Similarity=0.246 Sum_probs=50.9
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHHHHHH
Q 010509 71 TGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 71 s~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
|+++++|++++|+||||||||||+++|+|+.+ .+.+++..... ..++.++|++|++..++.+++.+++.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 56788999999999999999999999999864 57777765532 23456899999877776666655543
No 162
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.93 E-value=8e-11 Score=109.77 Aligned_cols=138 Identities=19% Similarity=0.193 Sum_probs=76.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC-----------cccEEEECCEeCCh------hccccEEEEecCCCC-CCCCCHHH
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLGR-----------INGRITYNGKPFSN------QMTRNTGFVTQEDVL-SPYLTVTE 140 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~~-----------~~G~I~~~G~~~~~------~~~~~i~yv~Q~~~l-~~~lTv~E 140 (508)
.++|+|+||||||||++.++|...+ .+|+|.++|+++.- ...+..++++|.... ...++|.+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 5899999999999999999997643 57999999976421 111112222221000 00011111
Q ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHH---HcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 010509 141 TMVFTALLQLPNSFTEKEKIKCAEAVMT---ELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSG 217 (508)
Q Consensus 141 ~l~~~~~l~~~~~~~~~~~~~~v~~~l~---~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsg 217 (508)
.. ... ..+.+..+++ ...-.+..-..+++. .+|..-..+++.+|++++.+|+++++| ||+
T Consensus 111 ~~------------~~~-s~~~~~~~~~~~~~~~~~~~~i~~v~nK--~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sa 173 (191)
T 1oix_A 111 IA------------KHL-TYENVERWLKELRDHADSNIVIMLVGNK--SDLRHLRAVPTDEARAFAEKNGLSFIE--TSA 173 (191)
T ss_dssp TT------------CHH-HHHTHHHHHHHHHHHSCTTCEEEEEEEC--GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCT
T ss_pred Cc------------CHH-HHHHHHHHHHHHHHhcCCCCcEEEEEEC--cccccccccCHHHHHHHHHHcCCEEEE--EeC
Confidence 00 000 0001111111 111011000111111 123332344578899999999999999 999
Q ss_pred CCHHHHHHHHHHHHHH
Q 010509 218 LDSTIAQQILSILLKL 233 (508)
Q Consensus 218 LD~~~~~~i~~~L~~l 233 (508)
+|..+..++++.|.+.
T Consensus 174 ld~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 174 LDSTNVEAAFQTILTE 189 (191)
T ss_dssp TTCTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 9999999999988763
No 163
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.87 E-value=7.8e-11 Score=113.98 Aligned_cols=58 Identities=14% Similarity=0.143 Sum_probs=42.5
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh------------hccccEEEEecC
Q 010509 71 TGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN------------QMTRNTGFVTQE 129 (508)
Q Consensus 71 s~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~------------~~~~~i~yv~Q~ 129 (508)
++++++ ++++|+|||||||||||++|+|.+.|++|+|.++|.++.. ..++.++|++|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 456667 8999999999999999999999999999999999987621 135679999984
No 164
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.81 E-value=8.3e-11 Score=113.22 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=23.4
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh-cCCCC
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG-GRLGR 103 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~-g~~~~ 103 (508)
.+..+++|+++++|++++|+||||||||||+++|+ |+.++
T Consensus 14 ~~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 14 AQTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp --------CCEECCCEEEEECSCC----CHHHHHHC----C
T ss_pred hcccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 46789999999999999999999999999999999 98754
No 165
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.76 E-value=5.1e-09 Score=107.72 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=36.9
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEE-EECCEe
Q 010509 66 ILKGIT--GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRI-TYNGKP 114 (508)
Q Consensus 66 iL~~vs--~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I-~~~G~~ 114 (508)
-|+.+- +=+++|+++.|.||||||||||+..+++...+..|.+ ++++..
T Consensus 48 ~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 48 AIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp HHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 355543 3689999999999999999999999998765445554 454443
No 166
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.65 E-value=2.1e-08 Score=103.53 Aligned_cols=149 Identities=17% Similarity=0.204 Sum_probs=88.6
Q ss_pred CCeE-EEEECCCCCcHHHHHHHHhcCCC-----------CcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHH---
Q 010509 76 PGEM-LAMLGPSGCGKTTLLTALGGRLG-----------RINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTE--- 140 (508)
Q Consensus 76 ~Ge~-~ailG~nGsGKSTLL~~L~g~~~-----------~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E--- 140 (508)
+|-. ++|+|+||||||||+|.|+|... +.+|.|.++|.++. +....|++.|.+. ..+..
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~--l~DT~G~i~~lp~----~lve~f~~ 250 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM--LVDTVGFIRGIPP----QIVDAFFV 250 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE--EEECCCBCSSCCG----GGHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE--EEeCCCchhcCCH----HHHHHHHH
Confidence 4444 99999999999999999999763 56799999986541 2223455444221 11211
Q ss_pred HHHHHHH----hcC--CCCCC--HHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHH----HHH-hhCCC
Q 010509 141 TMVFTAL----LQL--PNSFT--EKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIG----QEI-LINPS 207 (508)
Q Consensus 141 ~l~~~~~----l~~--~~~~~--~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia----~aL-~~~P~ 207 (508)
++..... +.. ..... ..+..+.+.++++.+++.+..--.++|. ...+|+|+++|+.++ +++ ..+|+
T Consensus 251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK-~Dl~~~~~~~~~~~~~~l~~~l~~~~~~ 329 (364)
T 2qtf_A 251 TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNK-IDKINGDLYKKLDLVEKLSKELYSPIFD 329 (364)
T ss_dssp HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEEC-GGGCCSCHHHHHHHHHHHHHHHCSCEEE
T ss_pred HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEEC-CCCCCchHHHHHHHHHHHHHHhcCCCCc
Confidence 1111100 000 01111 1233445677888888765431112211 225788888988887 444 33445
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHHHc
Q 010509 208 LLFLDEPTSGLDSTIAQQILSILLKLAN 235 (508)
Q Consensus 208 illLDEPtsgLD~~~~~~i~~~L~~l~~ 235 (508)
+ +|+|++|.....++.+.|.++..
T Consensus 330 ~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 330 V----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp E----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred E----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4 89999999999999999988653
No 167
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.62 E-value=1.4e-11 Score=127.95 Aligned_cols=158 Identities=15% Similarity=0.137 Sum_probs=89.9
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCC-CCCCCCHHHHH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDV-LSPYLTVTETM 142 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~-l~~~lTv~E~l 142 (508)
..+++++|+.+++|++++|.||||||||||+++|+|. .+|++...+.+ ....+..+++++|... +++.++....+
T Consensus 156 ~~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~-~~~~~~~lg~~~q~~~~l~dd~~~~~~~ 231 (377)
T 1svm_A 156 YDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLP-LDRLNFELGVAIDQFLVVFEDVKGTGGE 231 (377)
T ss_dssp HHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSC-TTTHHHHHGGGTTCSCEEETTCCCSTTT
T ss_pred HHHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEecc-chhHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 4689999999999999999999999999999999985 46777652111 1111223556666543 23333322111
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHH---cCCCc-cc---ccc--cC--CCCCCccCHHHHHHHHHHHHHhhCCCEEE-
Q 010509 143 VFTALLQLPNSFTEKEKIKCAEAVMTE---LGLSE-CK---NSL--IG--GPLTRGVSGGERKRVSIGQEILINPSLLF- 210 (508)
Q Consensus 143 ~~~~~l~~~~~~~~~~~~~~v~~~l~~---lgL~~-~~---~~~--vg--~~~~~~LSGGerqRv~Ia~aL~~~P~ill- 210 (508)
.-++... ........+.+.++. ..+.. .. +.. .| +.....+++|+++|+..+.+++.+|++++
T Consensus 232 ----~r~l~~~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliy 306 (377)
T 1svm_A 232 ----SRDLPSG-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHC 306 (377)
T ss_dssp ----TTTCCCC-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHH
T ss_pred ----Hhhcccc-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEE
Confidence 0001000 110011222333331 00110 00 000 00 11234689999999998888888999887
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHcCCCEEE
Q 010509 211 LDEPTSGLDSTIAQQILSILLKLANGGRTIV 241 (508)
Q Consensus 211 LDEPtsgLD~~~~~~i~~~L~~l~~~g~tii 241 (508)
||+|+. ..++++.++|+++.
T Consensus 307 Ld~~~~-----------~l~~RL~~Rg~t~~ 326 (377)
T 1svm_A 307 LERSEF-----------LLEKRIIQSGIALL 326 (377)
T ss_dssp HHTCTH-----------HHHTTCTTCHHHHH
T ss_pred EeCCHH-----------HHHHHHHHcCccHH
Confidence 999987 34556666665443
No 168
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.61 E-value=3.6e-08 Score=105.19 Aligned_cols=59 Identities=22% Similarity=0.392 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHHH----cCCCEEEEEecCcc
Q 010509 190 GGERKRVSIGQEILINPSLLFLDEP----------TSGLDSTIAQQILSILLKLA----NGGRTIVMTIHQPS 248 (508)
Q Consensus 190 GGerqRv~Ia~aL~~~P~illLDEP----------tsgLD~~~~~~i~~~L~~l~----~~g~tii~s~H~~~ 248 (508)
|++++|..++++....|.|||+||+ +.|.|......+.++|..+- +.+..||.+||+|.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~ 165 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPD 165 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChh
Confidence 6778888899999999999999999 44677776666777776663 34789999999985
No 169
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.59 E-value=1.9e-08 Score=93.86 Aligned_cols=37 Identities=24% Similarity=0.301 Sum_probs=32.7
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHH
Q 010509 196 VSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLA 234 (508)
Q Consensus 196 v~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~ 234 (508)
...|++++.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887753
No 170
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.59 E-value=1.7e-09 Score=101.70 Aligned_cols=70 Identities=20% Similarity=0.265 Sum_probs=45.7
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh---ccccEEEEecCCCCCCCCCHHHHH
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ---MTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~---~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
+-....++|++++|+||||||||||+++|++++ |.+.++|.++... .+...++++|+....+.+++.+++
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 334566799999999999999999999999976 8899998776421 122457777764443333444433
No 171
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.54 E-value=1.1e-07 Score=107.41 Aligned_cols=72 Identities=19% Similarity=0.227 Sum_probs=58.0
Q ss_pred CCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEEE-ecCcchHHHhhccE
Q 010509 185 TRGVSGGERKRVSIGQEILINPSLLFLDEPTS-GLDSTIAQQILSILLKLANGGRTIVMT-IHQPSNMLYYMFHK 257 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~aL~~~P~illLDEPts-gLD~~~~~~i~~~L~~l~~~g~tii~s-~H~~~~~~~~~~D~ 257 (508)
+.-+|+|+.+|..++..++.+++++++|||.. +||......+++.+.+...+.++|++| ||++. .+.+++++
T Consensus 188 I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~-~l~~~~~~ 261 (773)
T 2xau_A 188 LKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAE-KFQRYFND 261 (773)
T ss_dssp EEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCH-HHHHHTTS
T ss_pred EEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHH-HHHHHhcC
Confidence 34679999999999999999999999999996 999888777777776655456788885 99875 45666764
No 172
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.51 E-value=5.5e-08 Score=89.46 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=44.2
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECC---------EeCCh-hccccEEEEecCC
Q 010509 68 KGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG---------KPFSN-QMTRNTGFVTQED 130 (508)
Q Consensus 68 ~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G---------~~~~~-~~~~~i~yv~Q~~ 130 (508)
+++++.+.+| +++|+||||||||||+++|.+.+.+..|...-.+ ..... .....+..++|++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 6889999999 9999999999999999999998766555332221 11000 1234688888875
No 173
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.51 E-value=1.6e-09 Score=101.96 Aligned_cols=53 Identities=25% Similarity=0.315 Sum_probs=44.7
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEE--EECCEeCCh
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRI--TYNGKPFSN 117 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I--~~~G~~~~~ 117 (508)
....+++++..++|++++|+||||||||||+++|++++. ..|.+ .++|.++..
T Consensus 12 ~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 12 VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVRH 66 (200)
T ss_dssp CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHTT
T ss_pred cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhhh
Confidence 445677777789999999999999999999999999886 67887 888876543
No 174
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.47 E-value=4.4e-08 Score=91.57 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=29.2
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCCCCccc
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING 106 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G 106 (508)
++++|++++|+||||||||||+++|+++..|..|
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 5789999999999999999999999999866555
No 175
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.46 E-value=7e-08 Score=98.54 Aligned_cols=129 Identities=17% Similarity=0.170 Sum_probs=84.9
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHH
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVF 144 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 144 (508)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++...... | ..+.|+.=+ ++..+
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~-------g--------~~Vl~fSlE------ms~~q---- 88 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALND-------D--------RGVAVFSLE------MSAEQ---- 88 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-------T--------CEEEEEESS------SCHHH----
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-------C--------CeEEEEeCC------CCHHH----
Confidence 4567777779999999999999999999998888643211 1 124443321 23322
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 010509 145 TALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQ 224 (508)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~ 224 (508)
...|+......+++.+..+ | .||.+|.+|+..|...+.++++.+.|+|... ..
T Consensus 89 --------------l~~Rlls~~~~v~~~~l~~---g-----~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~ 141 (338)
T 4a1f_A 89 --------------LALRALSDLTSINMHDLES---G-----RLDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IE 141 (338)
T ss_dssp --------------HHHHHHHHHHCCCHHHHHH---T-----CCCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HH
T ss_pred --------------HHHHHHHHhhCCCHHHHhc---C-----CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HH
Confidence 2222222222222222222 2 6999999999999999999999999998654 33
Q ss_pred HHHHHHHHHHc-C-CCEEEEEec
Q 010509 225 QILSILLKLAN-G-GRTIVMTIH 245 (508)
Q Consensus 225 ~i~~~L~~l~~-~-g~tii~s~H 245 (508)
++...++++.+ . |..+|++-|
T Consensus 142 ~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCCEEEEec
Confidence 67777777764 3 677777643
No 176
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.45 E-value=1.4e-08 Score=99.40 Aligned_cols=63 Identities=22% Similarity=0.178 Sum_probs=49.2
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHh---cCCCCcccEEE--------ECCEeCCh-----hccccEEEEec
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALG---GRLGRINGRIT--------YNGKPFSN-----QMTRNTGFVTQ 128 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~---g~~~~~~G~I~--------~~G~~~~~-----~~~~~i~yv~Q 128 (508)
.++++.+ ++|++++|+|||||||||++++|+ |...+++|.+. .+|.++.. ..++.+++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 3455544 789999999999999999999999 88888999999 88887732 35667889987
Q ss_pred CC
Q 010509 129 ED 130 (508)
Q Consensus 129 ~~ 130 (508)
++
T Consensus 95 ~~ 96 (252)
T 4e22_A 95 SQ 96 (252)
T ss_dssp EE
T ss_pred cC
Confidence 54
No 177
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.40 E-value=7.2e-10 Score=118.96 Aligned_cols=129 Identities=16% Similarity=0.213 Sum_probs=85.6
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChh----ccccEEEEecCCC-CCCCCCH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQ----MTRNTGFVTQEDV-LSPYLTV 138 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~----~~~~i~yv~Q~~~-l~~~lTv 138 (508)
..+++++++.+++| ++|.||||+|||||+++|++... .|.+.++|.++... ..+.+..++|... ..|.+.+
T Consensus 53 ~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~ 128 (499)
T 2dhr_A 53 PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVF 128 (499)
T ss_dssp GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEE
T ss_pred hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEE
Confidence 45788999999999 89999999999999999999764 67899998765321 1233555666542 3445555
Q ss_pred HHHHHHHHHhcCC-CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 010509 139 TETMVFTALLQLP-NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS 216 (508)
Q Consensus 139 ~E~l~~~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPts 216 (508)
.|++......+.. .....++..+.+.+++. .+||||+|+..|+++..++|++ |||+..
T Consensus 129 IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 129 IDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 5555322111100 00112333344444443 4788999998899999999987 899875
No 178
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.37 E-value=5.7e-08 Score=98.59 Aligned_cols=77 Identities=14% Similarity=0.158 Sum_probs=59.2
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCCh--------hc-----cccEEEE-ecCCCC
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSN--------QM-----TRNTGFV-TQEDVL 132 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~--------~~-----~~~i~yv-~Q~~~l 132 (508)
++++++.+++|++++|+|+||+||||++..|++.+.+..|+|.+.+.+... .+ +..+.++ +|....
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 478999999999999999999999999999999887788999998887632 12 4568888 666544
Q ss_pred CCCCCHHHHHH
Q 010509 133 SPYLTVTETMV 143 (508)
Q Consensus 133 ~~~lTv~E~l~ 143 (508)
.|..++.+++.
T Consensus 175 ~p~~~~~~~l~ 185 (320)
T 1zu4_A 175 DPASVVFDAIK 185 (320)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 44434444443
No 179
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.36 E-value=7.8e-08 Score=89.28 Aligned_cols=30 Identities=37% Similarity=0.503 Sum_probs=26.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCCCCccc
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRLGRING 106 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G 106 (508)
|++++|+||||||||||+++|+|++++..|
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~ 30 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFG 30 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccce
Confidence 678999999999999999999998864333
No 180
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.36 E-value=2.3e-08 Score=97.94 Aligned_cols=53 Identities=34% Similarity=0.468 Sum_probs=36.6
Q ss_pred eEEEEeE-EEEEeccccccCcccccccceeeeceEEEEeC---CeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 38 TLKFEDI-VYKIKMKKGFYGSNKKIEEKAILKGITGMVKP---GEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 38 ~l~~~~l-~~~~~~~~~~~~~~~~~~~~~iL~~vs~~v~~---Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
.++++|+ +++++ +.+++|+|+|+++++ |+.++|+|++||||||+.++|++.++
T Consensus 17 ~l~~~~~~~~~~~------------~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 17 LLETGSLLHSPFD------------EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ---------------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred ceEEcceeeEEec------------CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 6999999 88862 135799999999999 99999999999999999999998653
No 181
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.34 E-value=2.8e-07 Score=94.58 Aligned_cols=61 Identities=10% Similarity=0.067 Sum_probs=48.9
Q ss_pred CccCHHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEe--cCcc
Q 010509 186 RGVSGGERKRVSIGQEILINPSLLFLD-EPTSGLDSTIAQQILSILLKLANGGRTIVMTI--HQPS 248 (508)
Q Consensus 186 ~~LSGGerqRv~Ia~aL~~~P~illLD-EPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~--H~~~ 248 (508)
..+|+||+|++. +.+...++-++++| +|++|+|......+++.+++... +..+|++. ||..
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-DLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT-TSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC-CCCEEEEEECcccC
Confidence 368999998876 55555677889999 99999999998888888877654 67888888 8864
No 182
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.31 E-value=1e-07 Score=89.56 Aligned_cols=127 Identities=13% Similarity=0.196 Sum_probs=72.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCCHHH
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFTEKE 158 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~~~~ 158 (508)
+++|+|+|||||||+.++|+++ |...+++-++..... + +. .
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~~~~~~-------~----------------------~~--~--- 44 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVVAREVV-------A----------------------KD--S--- 44 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHHHHHTT-------C----------------------SS--C---
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHHHHHHc-------c----------------------CC--h---
Confidence 6899999999999999999983 433443221110000 0 00 0
Q ss_pred HHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCC
Q 010509 159 KIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGGR 238 (508)
Q Consensus 159 ~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~ 238 (508)
....++.+.+|... -.+.|+.+|..++.....+|+.+.++ .+.++|.....+.+.+++. .+.
T Consensus 45 --~~~~~i~~~~g~~~------------~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~--~~~ 106 (206)
T 1jjv_A 45 --PLLSKIVEHFGAQI------------LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ--TAP 106 (206)
T ss_dssp --HHHHHHHHHHCTTC------------C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC--CSS
T ss_pred --HHHHHHHHHhCHHH------------hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc--CCC
Confidence 12334555555432 13678888888888888877644332 3345666555555544432 356
Q ss_pred EEEEEecCcchH-HHhhccEEEEEe
Q 010509 239 TIVMTIHQPSNM-LYYMFHKVLLLS 262 (508)
Q Consensus 239 tii~s~H~~~~~-~~~~~D~v~lL~ 262 (508)
++|+.+|...+. ....||.+++++
T Consensus 107 ~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 107 YTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp EEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred EEEEEechhhhcCcHhhCCEEEEEE
Confidence 888888976542 246788887774
No 183
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.28 E-value=1.6e-07 Score=86.65 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=31.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCC-cccEEEECC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGR-INGRITYNG 112 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-~~G~I~~~G 112 (508)
.+|++++|+||||||||||++.|++..++ ..|.|....
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~tt 41 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTT 41 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEEC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccC
Confidence 37899999999999999999999998753 566665543
No 184
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=98.28 E-value=1.8e-06 Score=88.16 Aligned_cols=44 Identities=14% Similarity=0.064 Sum_probs=36.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHc---CCCEEEEEecCcc
Q 010509 204 INPSLLFLDEPTSGLDSTIAQQILSILLKLAN---GGRTIVMTIHQPS 248 (508)
Q Consensus 204 ~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~---~g~tii~s~H~~~ 248 (508)
.+|.++++||+... |......+.+.+.++.. .+.++|+++|++.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~ 170 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDA 170 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCch
Confidence 45889999999876 88888888888877665 5789999999974
No 185
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.26 E-value=3.9e-07 Score=96.37 Aligned_cols=96 Identities=9% Similarity=0.127 Sum_probs=62.1
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccEEEE-EeCCeEEEEcChhh--HHH--
Q 010509 204 INPSLLFLDEPTSGLDS-TIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHKVLL-LSEGYPLYSGEASG--AMN-- 277 (508)
Q Consensus 204 ~~P~illLDEPtsgLD~-~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~v~l-L~~G~iv~~G~~~~--~~~-- 277 (508)
.+|++|++||+..-.+. .++..+...+..+.+.|+.||+++|.+...+..+.+++.- +..|.++..++++. ..+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL 272 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIA 272 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHH
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHH
Confidence 48999999999887664 6788899999998888999999999865432222233222 35677777766642 222
Q ss_pred --HHHhcCCCCCCCCChHHHHHHhhc
Q 010509 278 --YFASIGYCPSVPTNPSDFLLDLAS 301 (508)
Q Consensus 278 --~f~~~g~~~p~~~npad~~~~~~~ 301 (508)
..+..|...+ ....+++.+...
T Consensus 273 ~~~~~~~~~~i~--~e~l~~la~~~~ 296 (440)
T 2z4s_A 273 RKMLEIEHGELP--EEVLNFVAENVD 296 (440)
T ss_dssp HHHHHHHTCCCC--TTHHHHHHHHCC
T ss_pred HHHHHHcCCCCC--HHHHHHHHHhcC
Confidence 2333455433 344666665544
No 186
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.24 E-value=5.2e-06 Score=85.08 Aligned_cols=157 Identities=16% Similarity=0.146 Sum_probs=83.3
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC--CCCcccEEEECCEeCCh----hccccEEEEecCCC-CCCC-
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR--LGRINGRITYNGKPFSN----QMTRNTGFVTQEDV-LSPY- 135 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~--~~~~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~-l~~~- 135 (508)
..+|++++++++ .++|+|++|||||||++.|+|. ++..+|.++-....+.. .-.+..+...+.+. .+..
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDF 100 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCH
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCH
Confidence 458899999988 8999999999999999999994 45566665433322210 01122333333221 1110
Q ss_pred CCHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCC----C----------------cccccccCCCC---CCccCHHH
Q 010509 136 LTVTETMVFTALLQLPNSFTEKEKIKCAEAVMTELGL----S----------------ECKNSLIGGPL---TRGVSGGE 192 (508)
Q Consensus 136 lTv~E~l~~~~~l~~~~~~~~~~~~~~v~~~l~~lgL----~----------------~~~~~~vg~~~---~~~LSGGe 192 (508)
-.+.+.+. ++.....|- . ...|+ .|-.. ..+-++.+
T Consensus 101 ~~v~~~i~--------------------~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDt-PG~~~~~~~~q~~~~~ 159 (360)
T 3t34_A 101 AAVRKEIQ--------------------DETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDL-PGLTKVAVDGQSDSIV 159 (360)
T ss_dssp HHHHHHHH--------------------HHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEEC-CCBCSSCCTTCCSSHH
T ss_pred HHHHHHHH--------------------HHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEEC-CCCCcCCcCCCchhHH
Confidence 00111111 111111110 0 01122 11100 11356788
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCC-CEEEEEec
Q 010509 193 RKRVSIGQEILINPSLLFLDEPTSGLDSTIAQQILSILLKLANGG-RTIVMTIH 245 (508)
Q Consensus 193 rqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g-~tii~s~H 245 (508)
+++..+++..+.+|+++++.-..+..|... ...++.++.+...| .+|++.+.
T Consensus 160 ~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 160 KDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp HHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred HHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 999999999999999887774334445443 45567777776555 56666665
No 187
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.22 E-value=3.9e-07 Score=101.24 Aligned_cols=129 Identities=18% Similarity=0.101 Sum_probs=76.6
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCC--cccEEEECCEeCCh----hccccEEEEecCCCCCCCCCHHHHHHH
Q 010509 71 TGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGR--INGRITYNGKPFSN----QMTRNTGFVTQEDVLSPYLTVTETMVF 144 (508)
Q Consensus 71 s~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~--~~G~I~~~G~~~~~----~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 144 (508)
|+.+++|+.++|+|++|+|||||++.|++...+ ..|+| .+|..+.. +.++.+++..|...+... ++..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~---- 76 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV---- 76 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE----
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE----
Confidence 356788999999999999999999999986543 56877 56655432 223445555554332211 1000
Q ss_pred HHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 010509 145 TALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIAQ 224 (508)
Q Consensus 145 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~~ 224 (508)
...||. |. ..++ .......-..++.++++| |+.|+|+.+.
T Consensus 77 -----------------------------nliDTp-G~---~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt~- 116 (665)
T 2dy1_A 77 -----------------------------FLLDAP-GY---GDFV-----GEIRGALEAADAALVAVS-AEAGVQVGTE- 116 (665)
T ss_dssp -----------------------------EEEECC-CS---GGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHHH-
T ss_pred -----------------------------EEEeCC-Cc---cchH-----HHHHHHHhhcCcEEEEEc-CCcccchhHH-
Confidence 111211 10 0111 112222335678899999 9999998776
Q ss_pred HHHHHHHHHHcCCCEEEEEecCcc
Q 010509 225 QILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 225 ~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
+.++.+.+.+..+|++.|..+
T Consensus 117 ---~~~~~~~~~~ip~ilv~NKiD 137 (665)
T 2dy1_A 117 ---RAWTVAERLGLPRMVVVTKLD 137 (665)
T ss_dssp ---HHHHHHHHTTCCEEEEEECGG
T ss_pred ---HHHHHHHHccCCEEEEecCCc
Confidence 333333445888899999865
No 188
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.15 E-value=8.5e-07 Score=83.01 Aligned_cols=39 Identities=23% Similarity=0.149 Sum_probs=25.0
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
...+++|||+++++|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 456899999999999999999999999999999999865
No 189
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.13 E-value=7.1e-07 Score=85.70 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=35.5
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
...++|++++|.|+||||||||+++|+|+ .|+|.+.+++.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 34579999999999999999999999998 68899988764
No 190
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.12 E-value=8.3e-07 Score=83.89 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=30.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCC-cccEEEE
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGR-INGRITY 110 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~-~~G~I~~ 110 (508)
++|++++|+||||||||||++.|++.+++ ..+.+..
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~ 42 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISM 42 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEec
Confidence 58999999999999999999999999865 4444433
No 191
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=98.11 E-value=1e-05 Score=82.50 Aligned_cols=143 Identities=16% Similarity=0.152 Sum_probs=80.3
Q ss_pred eeceE-EEEeCCeEEEEECCCCCcHHHHHHHHhcC--CCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 67 LKGIT-GMVKPGEMLAMLGPSGCGKTTLLTALGGR--LGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 67 L~~vs-~~v~~Ge~~ailG~nGsGKSTLL~~L~g~--~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
|+.+- +-+++|+++.|.||+|+|||||+..++.. .++..| |. ...+.|+.-+..+ ...+-..
T Consensus 111 LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~g-----g~------~~~vlyi~~E~~~----~~~~l~~ 175 (343)
T 1v5w_A 111 FDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGG-----YP------GGKIIFIDTENTF----RPDRLRD 175 (343)
T ss_dssp HHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTT-----BC------CCEEEEEESSSCC----CHHHHHH
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccC-----CC------CCeEEEEECCCCC----CHHHHHH
Confidence 44433 57899999999999999999999999874 222111 10 1235566554321 2222222
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH-HHHHHHHHHHh----hCCCEEEEeCCCCCC
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE-RKRVSIGQEIL----INPSLLFLDEPTSGL 218 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe-rqRv~Ia~aL~----~~P~illLDEPtsgL 218 (508)
....+ ..+. +++++.+-+. +..++.+ .+.+..++.++ .+++++++|+.++-.
T Consensus 176 ~~~~~----g~~~-------~~~l~~l~~~------------~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~ 232 (343)
T 1v5w_A 176 IADRF----NVDH-------DAVLDNVLYA------------RAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALF 232 (343)
T ss_dssp HHHHT----TCCH-------HHHHHTEEEE------------ECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGH
T ss_pred HHHHc----CCCH-------HHHHhceeEe------------ecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHH
Confidence 22211 1111 1223322111 1223332 34555566666 568999999999865
Q ss_pred CHH------------HHHHHHHHHHHHHcC-CCEEEEEecCc
Q 010509 219 DST------------IAQQILSILLKLANG-GRTIVMTIHQP 247 (508)
Q Consensus 219 D~~------------~~~~i~~~L~~l~~~-g~tii~s~H~~ 247 (508)
+.. ...+++..|++++++ |.+||++.|-.
T Consensus 233 ~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 233 RVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 432 134566666777654 88999988854
No 192
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.07 E-value=3.7e-06 Score=84.85 Aligned_cols=132 Identities=15% Similarity=0.126 Sum_probs=84.5
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
-.-|+++.+-+++|+++.|.|++|+|||||+..++..... .| ..+.|+.=+ ++..+..
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g--------------~~vl~~slE------~s~~~l~- 112 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND--------------DVVNLHSLE------MGKKENI- 112 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT--------------CEEEEEESS------SCHHHHH-
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC--------------CeEEEEECC------CCHHHHH-
Confidence 3457777777999999999999999999998888753211 11 124455432 3333322
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTSGLDSTIA 223 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPtsgLD~~~~ 223 (508)
+++......+++.+..+ | . ..||++|++|+..|...+.++++.+.|+|... .
T Consensus 113 -----------------~R~~~~~~~i~~~~l~~---~--~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~ 164 (315)
T 3bh0_A 113 -----------------KRLIVTAGSINAQKIKA---A--R-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-----V 164 (315)
T ss_dssp -----------------HHHHHHHTTCCHHHHHS---C--H-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----H
T ss_pred -----------------HHHHHHHcCCCHHHHhc---C--C-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----H
Confidence 12221111122222211 1 0 13899999999999999999999999998643 4
Q ss_pred HHHHHHHHHHHcC-CCE--EEEEec
Q 010509 224 QQILSILLKLANG-GRT--IVMTIH 245 (508)
Q Consensus 224 ~~i~~~L~~l~~~-g~t--ii~s~H 245 (508)
.++.+.++++.++ |.. +|++-|
T Consensus 165 ~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 165 NYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 4567777777654 666 777755
No 193
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.06 E-value=2.1e-05 Score=77.75 Aligned_cols=72 Identities=19% Similarity=0.292 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHHHc----CCCEEEEEecCcc---hHH
Q 010509 189 SGGERKRVSIGQEILINPSLLFLDEPTSGLDS----------TIAQQILSILLKLAN----GGRTIVMTIHQPS---NML 251 (508)
Q Consensus 189 SGGerqRv~Ia~aL~~~P~illLDEPtsgLD~----------~~~~~i~~~L~~l~~----~g~tii~s~H~~~---~~~ 251 (508)
+++++.|..++.+...+|.+|++||+.+-++. .....++..+..... .+..||.+|++|. ..+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 45677777788888889999999999776553 223344444544322 2456788888753 334
Q ss_pred HhhccEEEE
Q 010509 252 YYMFHKVLL 260 (508)
Q Consensus 252 ~~~~D~v~l 260 (508)
.+-|++.+.
T Consensus 177 ~~R~~~~i~ 185 (297)
T 3b9p_A 177 LRRFTKRVY 185 (297)
T ss_dssp HHHCCEEEE
T ss_pred HhhCCeEEE
Confidence 445565433
No 194
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=98.00 E-value=5.4e-06 Score=83.09 Aligned_cols=150 Identities=16% Similarity=0.195 Sum_probs=80.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEE-CCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRLGRINGRITY-NGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFT 155 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~-~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~ 155 (508)
+..++|+|+||+|||||+|.|.|... .+ .+.+- ....+..+++.+++..+ ++.+ .| +..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g~~~------~i~s~~~~-tTr~~~~gi~~~~~~~i---~~iD---------Tp-G~~ 67 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLGQKI------SITSRKAQ-TTRHRIVGIHTEGAYQA---IYVD---------TP-GLH 67 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHTCSE------EECCCCSS-CCSSCEEEEEEETTEEE---EEES---------SS-SCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc------cccCCCCC-cceeeEEEEEEECCeeE---EEEE---------Cc-CCC
Confidence 34899999999999999999999741 11 11111 11234567777654211 0000 01 111
Q ss_pred HHHHHHHHHHHHHH---cCCCcccccc--cCCCCCCccCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHH
Q 010509 156 EKEKIKCAEAVMTE---LGLSECKNSL--IGGPLTRGVSGGERKRVSIGQEIL--INPSLLFLDEPTSGLDSTI-AQQIL 227 (508)
Q Consensus 156 ~~~~~~~v~~~l~~---lgL~~~~~~~--vg~~~~~~LSGGerqRv~Ia~aL~--~~P~illLDEPtsgLD~~~-~~~i~ 227 (508)
.+. .....+.+.. -.+.. .|-. +-+. ..+|+|++ .+++.+. ..|.++++ +.+|... ...+.
T Consensus 68 ~~~-~~~l~~~~~~~~~~~l~~-~D~vl~Vvd~--~~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~ 136 (301)
T 1ega_A 68 MEE-KRAINRLMNKAASSSIGD-VELVIFVVEG--TRWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLL 136 (301)
T ss_dssp HHH-HHHHHHHHTCCTTSCCCC-EEEEEEEEET--TCCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHH
T ss_pred ccc-hhhHHHHHHHHHHHHHhc-CCEEEEEEeC--CCCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHH
Confidence 000 0011111110 01111 1111 1111 13888886 4566666 67889998 7899876 67788
Q ss_pred HHHHHHHcC-CC--EEEEEecCcchHHHhhccEE
Q 010509 228 SILLKLANG-GR--TIVMTIHQPSNMLYYMFHKV 258 (508)
Q Consensus 228 ~~L~~l~~~-g~--tii~s~H~~~~~~~~~~D~v 258 (508)
+.++++++. |. .+.++.|+-. .+..++|.+
T Consensus 137 ~~l~~l~~~~~~~~~i~iSA~~g~-~v~~l~~~i 169 (301)
T 1ega_A 137 PHLQFLASQMNFLDIVPISAETGL-NVDTIAAIV 169 (301)
T ss_dssp HHHHHHHTTSCCSEEEECCTTTTT-THHHHHHHH
T ss_pred HHHHHHHHhcCcCceEEEECCCCC-CHHHHHHHH
Confidence 888888764 43 6666777654 355666654
No 195
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.00 E-value=1e-06 Score=82.69 Aligned_cols=42 Identities=24% Similarity=0.106 Sum_probs=36.4
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
.++|++++|+|+||||||||++.|++.+.+..|.|.+.+.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 578999999999999999999999998877788888766543
No 196
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.99 E-value=2.3e-05 Score=79.18 Aligned_cols=142 Identities=21% Similarity=0.277 Sum_probs=80.2
Q ss_pred eeceE-EEEeCCeEEEEECCCCCcHHHHHHHHhcCC-CCc-ccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 67 LKGIT-GMVKPGEMLAMLGPSGCGKTTLLTALGGRL-GRI-NGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 67 L~~vs-~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~-~~~-~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
|+.+- +-+++|+++.|.||+|+|||||+..++... .+. .| |. ...+.|+.-+..+ ...+-..
T Consensus 96 LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~g-----g~------~~~vlyi~~e~~~----~~~~l~~ 160 (324)
T 2z43_A 96 LDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKG-----GL------SGKAVYIDTEGTF----RWERIEN 160 (324)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT-----CC------SCEEEEEESSSCC----CHHHHHH
T ss_pred HHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccC-----CC------CCeEEEEECCCCC----CHHHHHH
Confidence 44432 578999999999999999999999888642 221 11 10 1235566544322 1222111
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH-HHHHHHHHHHh---hCCCEEEEeCCCCCCC
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE-RKRVSIGQEIL---INPSLLFLDEPTSGLD 219 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe-rqRv~Ia~aL~---~~P~illLDEPtsgLD 219 (508)
....+ +.+.+ ++++.+ .+. +..++.+ .+.+..++.++ .+|+++++|+.++-.+
T Consensus 161 ~~~~~----g~~~~-------~~~~~l--------~~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 161 MAKAL----GLDID-------NVMNNI--------YYI----RAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp HHHHT----TCCHH-------HHHHTE--------EEE----ECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred HHHHh----CCCHH-------HHhccE--------EEE----eCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 21111 11111 122211 111 1223332 35677777777 5799999999987543
Q ss_pred H--------HH----HHHHHHHHHHHHcC-CCEEEEEecC
Q 010509 220 S--------TI----AQQILSILLKLANG-GRTIVMTIHQ 246 (508)
Q Consensus 220 ~--------~~----~~~i~~~L~~l~~~-g~tii~s~H~ 246 (508)
. .. ..+++..|++++++ |.+||++.|-
T Consensus 218 ~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 218 AEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred hhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 2 11 24556666666654 8999998774
No 197
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.96 E-value=2.2e-06 Score=78.10 Aligned_cols=37 Identities=19% Similarity=0.395 Sum_probs=32.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
.+|++++|+|+|||||||+++.|++++ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 469999999999999999999999874 7788887655
No 198
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.93 E-value=1.9e-05 Score=83.11 Aligned_cols=125 Identities=10% Similarity=0.123 Sum_probs=72.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSFT 155 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~~ 155 (508)
++.+++++||+||||||++..|++.+.+..++|.+-+.+..+ ....|.+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r------------------~~a~eqL~~----------- 146 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR------------------PAAYDQLLQ----------- 146 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC------------------HHHHHHHHH-----------
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc------------------hhHHHHHHH-----------
Confidence 689999999999999999999999876656666664443210 011222221
Q ss_pred HHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCC-CC--CCHHHHHHHHHHHHH
Q 010509 156 EKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFLDEPT-SG--LDSTIAQQILSILLK 232 (508)
Q Consensus 156 ~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPt-sg--LD~~~~~~i~~~L~~ 232 (508)
.-+..|+.-... . .+...-+-.+-+++.+...+++++++|+|- .+ .|+....++.++++.
T Consensus 147 ----------~~~~~gv~~~~~---~----~~~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~ 209 (433)
T 3kl4_A 147 ----------LGNQIGVQVYGE---P----NNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDV 209 (433)
T ss_dssp ----------HHHTTTCCEECC---T----TCSCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHH
T ss_pred ----------HHHhcCCceeec---c----ccCCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHh
Confidence 122233321110 0 011111122234555555689999999997 35 788777777776666
Q ss_pred HHcCCCEEEEEecC
Q 010509 233 LANGGRTIVMTIHQ 246 (508)
Q Consensus 233 l~~~g~tii~s~H~ 246 (508)
+......+++..|.
T Consensus 210 ~~pd~vlLVlDa~~ 223 (433)
T 3kl4_A 210 LKPDDVILVIDASI 223 (433)
T ss_dssp HCCSEEEEEEEGGG
T ss_pred hCCcceEEEEeCcc
Confidence 54444555555554
No 199
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.93 E-value=3.1e-06 Score=79.83 Aligned_cols=29 Identities=24% Similarity=0.415 Sum_probs=26.1
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
..+|++++|+||||||||||++.|++..+
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34899999999999999999999998754
No 200
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.91 E-value=2.6e-06 Score=86.51 Aligned_cols=28 Identities=21% Similarity=0.358 Sum_probs=25.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
+++..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999999998653
No 201
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.90 E-value=6.4e-06 Score=77.20 Aligned_cols=44 Identities=27% Similarity=0.391 Sum_probs=35.7
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCC
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSP 134 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~ 134 (508)
-.+++|++++|+|+||||||||.+.|++.++ .+.+++|++.+++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-------------------~~~~i~~D~~~~~ 59 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-------------------NCSVISQDDFFKP 59 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-------------------TEEEEEGGGGBCC
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-------------------CcEEEeCCccccC
Confidence 4567899999999999999999999999763 2567777766554
No 202
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.87 E-value=7.1e-07 Score=90.49 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=34.3
Q ss_pred cceeeeceEEEEeCCe------EEEEECCCCCcHHHHHHHHhcCCC
Q 010509 63 EKAILKGITGMVKPGE------MLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge------~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
.+..|++++..+..++ ++||.||||||||||+++|++++.
T Consensus 72 ~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 72 ARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4566777777777776 999999999999999999999875
No 203
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.84 E-value=2.9e-06 Score=92.07 Aligned_cols=43 Identities=35% Similarity=0.493 Sum_probs=37.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCCCCccc-EEE-ECCEeC
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING-RIT-YNGKPF 115 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G-~I~-~~G~~~ 115 (508)
.+++|++++|+|+||||||||+++|+|++.+.+| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999988876 785 888654
No 204
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.83 E-value=1.1e-06 Score=83.31 Aligned_cols=54 Identities=22% Similarity=0.267 Sum_probs=43.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC---CCcccEEEE--------CCEeCCh-----hccccEEEEecCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL---GRINGRITY--------NGKPFSN-----QMTRNTGFVTQED 130 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~---~~~~G~I~~--------~G~~~~~-----~~~~~i~yv~Q~~ 130 (508)
+.+++|+|||||||||+.+.|++.+ .+++|++.. +|.++.. ..++.+++++|++
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 5689999999999999999999876 567888877 6776542 3456788888864
No 205
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.79 E-value=3e-05 Score=77.40 Aligned_cols=29 Identities=34% Similarity=0.663 Sum_probs=26.3
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++++..+.|.||+|+|||||.++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 45788999999999999999999999865
No 206
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.77 E-value=2.1e-06 Score=78.72 Aligned_cols=40 Identities=35% Similarity=0.386 Sum_probs=32.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCccc--EEEECCEeC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRING--RITYNGKPF 115 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G--~I~~~G~~~ 115 (508)
++|++++|.|++||||||+.+.|++.+.+ .| .|.++|..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999997643 45 566665544
No 207
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.77 E-value=0.0001 Score=77.75 Aligned_cols=170 Identities=15% Similarity=0.172 Sum_probs=96.4
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHH
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVF 144 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~ 144 (508)
.-|+.+.+-+++|+++.|.|++|+|||||+.-++.......| ..+.|+.=+ ++..+...-
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g--------------~~vl~~slE------~~~~~l~~R 247 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG--------------VGVGIYSLE------MPAAQLTLR 247 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--------------CCEEEEESS------SCHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--------------CeEEEEECC------CCHHHHHHH
Confidence 456777777999999999999999999999888864321111 113333222 222221110
Q ss_pred --HHHhcCC------CCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh--hCCCEEEEeCC
Q 010509 145 --TALLQLP------NSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL--INPSLLFLDEP 214 (508)
Q Consensus 145 --~~~l~~~------~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~--~~P~illLDEP 214 (508)
+.....+ ...+.++ .+++.+.++.+.-.+. .+-+ ..++|..+- .+.++.+. .+|+++++|..
T Consensus 248 ~~~~~~~i~~~~l~~g~l~~~~-~~~~~~a~~~l~~~~l---~i~d--~~~~s~~~l--~~~~~~l~~~~~~~lIvID~l 319 (444)
T 2q6t_A 248 MMCSEARIDMNRVRLGQLTDRD-FSRLVDVASRLSEAPI---YIDD--TPDLTLMEV--RARARRLVSQNQVGLIIIDYL 319 (444)
T ss_dssp HHHHHTTCCTTTCCGGGCCHHH-HHHHHHHHHHHHTSCE---EEEC--CTTCBHHHH--HHHHHHHHHHSCCCEEEEECG
T ss_pred HHHHHcCCCHHHHhCCCCCHHH-HHHHHHHHHHHhcCCE---EEEC--CCCCCHHHH--HHHHHHHHHHcCCCEEEEcCh
Confidence 0111110 0123333 2334444444322211 1111 125676664 34555565 47999999998
Q ss_pred CCCCCH----------HHHHHHHHHHHHHHcC-CCEEEEEecC-----------cc-------hHHHhhccEEEEEe
Q 010509 215 TSGLDS----------TIAQQILSILLKLANG-GRTIVMTIHQ-----------PS-------NMLYYMFHKVLLLS 262 (508)
Q Consensus 215 tsgLD~----------~~~~~i~~~L~~l~~~-g~tii~s~H~-----------~~-------~~~~~~~D~v~lL~ 262 (508)
+.-.+. ....++.+.|+.++++ +.+||+++|- |. ..+.+.+|.|+.|.
T Consensus 320 ~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 320 QLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp GGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred hhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 754322 1234677888888765 8999999882 11 03567899999986
No 208
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.72 E-value=1.2e-05 Score=73.20 Aligned_cols=22 Identities=36% Similarity=0.708 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
.++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5799999999999999999985
No 209
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.71 E-value=0.00011 Score=70.95 Aligned_cols=33 Identities=36% Similarity=0.713 Sum_probs=23.9
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++++++..++| +.|.||+|+|||||+++|++..
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~ 69 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEA 69 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHc
Confidence 44555555555 8899999999999999999865
No 210
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.70 E-value=2.2e-05 Score=89.00 Aligned_cols=30 Identities=37% Similarity=0.604 Sum_probs=28.0
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
.+++|+.++|.||||+|||||+++|++..+
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 678999999999999999999999999864
No 211
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.70 E-value=1.2e-05 Score=72.64 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=25.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLGR 103 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~~ 103 (508)
.|++++|+||||||||||+++|++++++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4778999999999999999999998653
No 212
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.70 E-value=1.7e-06 Score=88.33 Aligned_cols=53 Identities=25% Similarity=0.254 Sum_probs=44.9
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
.+.+++++++.+++|.+++|+|++|+|||||++.|++.+.+..|+|.+-+.+.
T Consensus 42 ~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 42 STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 35688899999999999999999999999999999998766677776655544
No 213
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.65 E-value=5.9e-07 Score=91.23 Aligned_cols=44 Identities=27% Similarity=0.508 Sum_probs=37.3
Q ss_pred cceeeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHhcCCCCccc
Q 010509 63 EKAILKGITGMVKPGEM--LAMLGPSGCGKTTLLTALGGRLGRING 106 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~--~ailG~nGsGKSTLL~~L~g~~~~~~G 106 (508)
...+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 45678888889999998 999999999999999999997644444
No 214
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.64 E-value=0.00022 Score=68.25 Aligned_cols=28 Identities=25% Similarity=0.413 Sum_probs=23.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCCccc
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLGRING 106 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~~~~G 106 (508)
-++|+|++|+|||||++.|.|.....++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 4799999999999999999997654444
No 215
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.63 E-value=2.7e-05 Score=69.80 Aligned_cols=30 Identities=30% Similarity=0.440 Sum_probs=24.9
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g 99 (508)
+.++++.+| +.+|+|||||||||++++|.-
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 445566665 999999999999999999974
No 216
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.61 E-value=1.4e-05 Score=76.64 Aligned_cols=152 Identities=16% Similarity=0.139 Sum_probs=74.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHHHHHHhcCCCCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMVFTALLQLPNSF 154 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~~~~~l~~~~~~ 154 (508)
.+|+.+++.||+||||||++..+........| ..+.++.+.+.+......++.+++.........
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~------------~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~--- 138 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFILDDFIQND------------RAAECNIVVTQPRRISAVSVAERVAFERGEEPG--- 138 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT------------CGGGCEEEEEESSHHHHHHHHHHHHHTTTCCTT---
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC------------CCCceEEEEeccchHHHHHHHHHHHHHhccccC---
Confidence 57999999999999999998876532111111 012344555554433233344443321100000
Q ss_pred CHHHHHHHHHHHHHHcCCCcccccccC--CCCCCccCHHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHH
Q 010509 155 TEKEKIKCAEAVMTELGLSECKNSLIG--GPLTRGVSGGERKRVSIGQEILINPSLLFLDEPTS-GLDSTIAQQILSILL 231 (508)
Q Consensus 155 ~~~~~~~~v~~~l~~lgL~~~~~~~vg--~~~~~~LSGGerqRv~Ia~aL~~~P~illLDEPts-gLD~~~~~~i~~~L~ 231 (508)
...|.....+.... +..+-=.+.|.-.+.. ...+.+-+++++||.-. ++|.......++.+.
T Consensus 139 -------------~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~ 203 (235)
T 3llm_A 139 -------------KSCGYSVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVV 203 (235)
T ss_dssp -------------SSEEEEETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHH
T ss_pred -------------ceEEEeechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHH
Confidence 00000000000000 0000012456655543 33578899999999965 788776655555554
Q ss_pred HHHcCCCEEEEEecCcchHHHhhcc
Q 010509 232 KLANGGRTIVMTIHQPSNMLYYMFH 256 (508)
Q Consensus 232 ~l~~~g~tii~s~H~~~~~~~~~~D 256 (508)
+...+-+++++|.--+.+...++++
T Consensus 204 ~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 204 QAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp HHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred hhCCCCeEEEEecCCCHHHHHHHcC
Confidence 4433334666653333334445554
No 217
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.59 E-value=5.1e-05 Score=79.89 Aligned_cols=146 Identities=12% Similarity=0.149 Sum_probs=73.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCC------------CcccEEEECCEeCC----hhccccEEEEecCCCCCCCCCHHHHH
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLG------------RINGRITYNGKPFS----NQMTRNTGFVTQEDVLSPYLTVTETM 142 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~------------~~~G~I~~~G~~~~----~~~~~~i~yv~Q~~~l~~~lTv~E~l 142 (508)
.++|+|+||+|||||+|.|+|... +.+|.+.++|+++. ...++..++.+|....+..++..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 799999999999999999999742 56799999998642 22344445555655555555556666
Q ss_pred HHHHHh----cCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCC----CCccCHHHHHHHHHHHHHh--hCCCEEEEe
Q 010509 143 VFTALL----QLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPL----TRGVSGGERKRVSIGQEIL--INPSLLFLD 212 (508)
Q Consensus 143 ~~~~~l----~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~----~~~LSGGerqRv~Ia~aL~--~~P~illLD 212 (508)
..+-.. ......+.. ..++.+.++..|..- -.++|.. .+..+--+- .-.+++.+. ...+++
T Consensus 262 ~~ad~vllv~d~~~~~~~~--~~~i~~~l~~~~~~~---ilv~NK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~--- 332 (439)
T 1mky_A 262 EKADVVVIVLDATQGITRQ--DQRMAGLMERRGRAS---VVVFNKWDLVVHREKRYDEF-TKLFREKLYFIDYSPLI--- 332 (439)
T ss_dssp HHCSEEEEEEETTTCCCHH--HHHHHHHHHHTTCEE---EEEEECGGGSTTGGGCHHHH-HHHHHHHCGGGTTSCEE---
T ss_pred hhCCEEEEEEeCCCCCCHH--HHHHHHHHHHcCCCE---EEEEECccCCCchhhHHHHH-HHHHHHHhccCCCCcEE---
Confidence 543110 011122332 234455555554321 1111100 001111111 113444443 234444
Q ss_pred CCCCCCCHHHHHHHHHHHHHHH
Q 010509 213 EPTSGLDSTIAQQILSILLKLA 234 (508)
Q Consensus 213 EPtsgLD~~~~~~i~~~L~~l~ 234 (508)
++|+++-....++++.+.+..
T Consensus 333 -~~SA~~g~gv~~l~~~i~~~~ 353 (439)
T 1mky_A 333 -FTSADKGWNIDRMIDAMNLAY 353 (439)
T ss_dssp -ECBTTTTBSHHHHHHHHHHHH
T ss_pred -EEECCCCCCHHHHHHHHHHHH
Confidence 488888888888888777654
No 218
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.57 E-value=2.1e-05 Score=75.59 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=32.1
Q ss_pred eeeceEEEEe---CCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEEC
Q 010509 66 ILKGITGMVK---PGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYN 111 (508)
Q Consensus 66 iL~~vs~~v~---~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~ 111 (508)
-|+++|+.+. +|.+++|.|++||||||+++.|+..+.. .+++...
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~ 59 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMT 59 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceee
Confidence 3677777776 9999999999999999999999998876 6666543
No 219
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.57 E-value=8.5e-06 Score=88.35 Aligned_cols=50 Identities=32% Similarity=0.529 Sum_probs=42.5
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEe
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKP 114 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~ 114 (508)
..+++++++.+ +|+.++|+||||+|||||+++|++...+..|+|.++|..
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~ 145 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVR 145 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccc
Confidence 44677888887 899999999999999999999999988888888877743
No 220
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.55 E-value=1.8e-05 Score=81.04 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=35.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+++.+++|+|++|||||||+|.|+|...+.+|+|.+.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 46889999999999999999999998777778887776654
No 221
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.48 E-value=8.2e-05 Score=69.11 Aligned_cols=24 Identities=42% Similarity=0.566 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.-+.|.||+|+|||||+++|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999999754
No 222
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.44 E-value=0.00015 Score=72.58 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=35.1
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 203 LINPSLLFLDEPTS-GLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 203 ~~~P~illLDEPts-gLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
..+|++|++||+-. .-|...+..+...+..+.+.|..+|++++.+.
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~ 142 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHP 142 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCG
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCCh
Confidence 35699999999865 33447788899999888777777777776543
No 223
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.41 E-value=0.00011 Score=67.65 Aligned_cols=36 Identities=36% Similarity=0.462 Sum_probs=21.0
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
..+++++++..++. .++++|++|+|||||++.+.+.
T Consensus 11 ~~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 11 RDVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 35789999998888 5689999999999999999984
No 224
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.40 E-value=9.5e-05 Score=69.71 Aligned_cols=44 Identities=11% Similarity=0.195 Sum_probs=30.7
Q ss_pred hCCCEEEEeCCCCC-CCHHHHHHHHHHHHHHHcCCCE-EEEEecCc
Q 010509 204 INPSLLFLDEPTSG-LDSTIAQQILSILLKLANGGRT-IVMTIHQP 247 (508)
Q Consensus 204 ~~P~illLDEPtsg-LD~~~~~~i~~~L~~l~~~g~t-ii~s~H~~ 247 (508)
.+|+++++||.-.- -+...+..+.+.+.+..+.+.. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCC
Confidence 56899999996542 2233377788888887766655 77777754
No 225
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.40 E-value=0.00013 Score=66.00 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|..++|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468889999999999999999999864
No 226
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.38 E-value=4.1e-05 Score=72.08 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=35.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCCCCccc--EEEECCEe
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRLGRING--RITYNGKP 114 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G--~I~~~G~~ 114 (508)
.+++|.+++|.|++||||||+.+.|++.+.+..| .+.++|..
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 3568999999999999999999999998876778 77777544
No 227
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.38 E-value=0.00057 Score=70.05 Aligned_cols=35 Identities=29% Similarity=0.381 Sum_probs=28.5
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 66 ILKGIT--GMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 66 iL~~vs--~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-|+.+- +=+++|+++.|.|++|+|||||...++..
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 355543 35889999999999999999999888754
No 228
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.36 E-value=0.0003 Score=68.84 Aligned_cols=28 Identities=32% Similarity=0.592 Sum_probs=24.3
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.++.-+.|.||+|+|||||.++++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3566679999999999999999999864
No 229
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.34 E-value=0.00086 Score=67.26 Aligned_cols=171 Identities=13% Similarity=0.110 Sum_probs=86.7
Q ss_pred eeeceE-EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEE-ECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 66 ILKGIT-GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRIT-YNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 66 iL~~vs-~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~-~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
-|+.+- +-+++|+++.|.||+|+|||||...++.......|... ..|.+....-...+.|+.-+..+. ..+-..
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~----~~~l~~ 161 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFR----PERIMQ 161 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCC----HHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCC----HHHHHH
Confidence 344433 56899999999999999999999888753110111100 001110000013466776554321 222221
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHH-HHHHHHHHHHhh---CCCEEEEeCCCCCCC
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGE-RKRVSIGQEILI---NPSLLFLDEPTSGLD 219 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGe-rqRv~Ia~aL~~---~P~illLDEPtsgLD 219 (508)
....+. .+.+ ++++.+- +- +..+..+ .+-+..++.++. +++++++|.-+.-..
T Consensus 162 ~~~~~g----~~~~-------~~~~~l~--------~~----~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 162 MAEHAG----IDGQ-------TVLDNTF--------VA----RAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp HHHHHT----CCHH-------HHHHTEE--------EE----ECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred HHHHcC----CCHH-------HHhcCEE--------EE----eCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 221221 1111 1222111 10 1122222 233444555653 589999999875321
Q ss_pred --------HHH----HHHHHHHHHHHHc-CCCEEEEEecCcc---------------hHHHhhccEEEEEeC
Q 010509 220 --------STI----AQQILSILLKLAN-GGRTIVMTIHQPS---------------NMLYYMFHKVLLLSE 263 (508)
Q Consensus 220 --------~~~----~~~i~~~L~~l~~-~g~tii~s~H~~~---------------~~~~~~~D~v~lL~~ 263 (508)
... ..+++..|+++++ .|.+||++.|-.. ..+.+.+|.++.|..
T Consensus 219 ~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~~~~g~~~~~~~~d~~i~l~~ 290 (322)
T 2i1q_A 219 NEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAEQAIGGHIVGHAATFRFFVRK 290 (322)
T ss_dssp HHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CCEESSHHHHHHHCSEEEEEEE
T ss_pred HHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCcCCCCcHHHHhcCcEEEEEEe
Confidence 111 2455666666664 5888888866321 125567888888874
No 230
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.34 E-value=0.00024 Score=70.26 Aligned_cols=31 Identities=35% Similarity=0.518 Sum_probs=25.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCCCccc
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLGRING 106 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G 106 (508)
|...+.|.||+|+|||||.++|++.....+|
T Consensus 46 ~~~~~ll~G~~GtGKt~la~~la~~~~~~~~ 76 (311)
T 4fcw_A 46 PIGSFLFLGPTGVGKTELAKTLAATLFDTEE 76 (311)
T ss_dssp CSEEEEEESCSSSSHHHHHHHHHHHHHSCGG
T ss_pred CceEEEEECCCCcCHHHHHHHHHHHHcCCCc
Confidence 3468999999999999999999997654444
No 231
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.29 E-value=0.00012 Score=68.84 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=24.3
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHh
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALG 98 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~ 98 (508)
+.++.+.+| +.+|.|||||||||++++|.
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 445566665 99999999999999999885
No 232
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.29 E-value=5.7e-06 Score=85.15 Aligned_cols=45 Identities=27% Similarity=0.235 Sum_probs=29.7
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCE
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGK 113 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~ 113 (508)
.+.+++++++.| +|+|+||+|||||++.|.|......|.+..++.
T Consensus 29 ~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~ 73 (361)
T 2qag_A 29 RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAAE 73 (361)
T ss_dssp THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-----------
T ss_pred CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCc
Confidence 456788888887 999999999999999999876544555544443
No 233
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=97.25 E-value=0.00071 Score=71.41 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=30.1
Q ss_pred eeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 65 AILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 65 ~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
.-|+.+.+=+++|+++.|.|++|+|||||.--++..
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~ 220 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKN 220 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHH
Confidence 356666666899999999999999999998777753
No 234
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.25 E-value=5.1e-05 Score=70.48 Aligned_cols=49 Identities=31% Similarity=0.381 Sum_probs=37.6
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC--------CCcccEEEECCE
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL--------GRINGRITYNGK 113 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~--------~~~~G~I~~~G~ 113 (508)
..+++++|+..++++ ++++|++|+|||||++.+.+.. .+..+.+.++|.
T Consensus 13 ~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~ 69 (198)
T 1f6b_A 13 SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGM 69 (198)
T ss_dssp CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTE
T ss_pred HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCE
Confidence 457899999888885 6899999999999999999742 234455666553
No 235
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.16 E-value=9.1e-05 Score=77.76 Aligned_cols=46 Identities=17% Similarity=0.049 Sum_probs=41.0
Q ss_pred eceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 68 KGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 68 ~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+++++. +|++++++|+|||||||++..|++.+.+..|+|.+.+.+.
T Consensus 91 ~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 577777 8999999999999999999999998877788998887765
No 236
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.16 E-value=0.00033 Score=72.00 Aligned_cols=31 Identities=23% Similarity=0.414 Sum_probs=27.3
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHh
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALG 98 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~ 98 (508)
+++.++++.+| +.+|.|||||||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 36777888786 99999999999999999986
No 237
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.16 E-value=3.9e-05 Score=79.26 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=31.5
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
|+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 899999999999999999999999999999864
No 238
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.15 E-value=0.00012 Score=67.15 Aligned_cols=35 Identities=31% Similarity=0.460 Sum_probs=29.6
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEE
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRI 108 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I 108 (508)
..+|.++.|.|++||||||+.+.|++.+....|.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 34789999999999999999999999875555555
No 239
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.12 E-value=0.0022 Score=65.47 Aligned_cols=27 Identities=26% Similarity=0.529 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++..-+.|.||+|+|||||.++|+...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456678999999999999999999764
No 240
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.08 E-value=0.00023 Score=66.53 Aligned_cols=29 Identities=31% Similarity=0.419 Sum_probs=26.0
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45899999999999999999999998663
No 241
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.07 E-value=0.00045 Score=69.94 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=23.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..+..+.|.||+|+|||||++.++...
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999765
No 242
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.06 E-value=0.0006 Score=60.95 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 243
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.06 E-value=2.7e-06 Score=85.96 Aligned_cols=51 Identities=6% Similarity=0.132 Sum_probs=35.4
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcchHHHhhccE
Q 010509 205 NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSNMLYYMFHK 257 (508)
Q Consensus 205 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~~~~~~~D~ 257 (508)
+++++++|| ...|++..+..+.+.+.+... ...+|++++++......+.+|
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~-~~~~il~~~~~~~l~~~l~sR 183 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSG-VTRFCLICNYVTRIIDPLASQ 183 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTT-TEEEEEEESCGGGSCHHHHHH
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCC-CceEEEEeCchhhCcchhhcc
Confidence 567999999 788999888888888877543 345666777765433333333
No 244
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.04 E-value=0.00025 Score=65.14 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=26.5
Q ss_pred ceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 69 GITGMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 69 ~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57788888999999999999999999999976
No 245
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.99 E-value=7e-05 Score=74.94 Aligned_cols=47 Identities=17% Similarity=0.142 Sum_probs=39.7
Q ss_pred ec-eEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 68 KG-ITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 68 ~~-vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
++ ++++.+ |++++++|+||+||||++..|++.+.+..|+|.+.+.+.
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45 777766 999999999999999999999998876677888876664
No 246
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.95 E-value=0.0014 Score=62.75 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=42.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEec---------CcchHHHhhccEEEEEe
Q 010509 205 NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH---------QPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 205 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H---------~~~~~~~~~~D~v~lL~ 262 (508)
+|+++++||--. |+. ++++.++.+++.|.+||++-| .++..+..++|+|.-|+
T Consensus 89 ~~dvViIDEaQ~-l~~----~~ve~l~~L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDD----RICEVANILAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCT----HHHHHHHHHHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcH----HHHHHHHHHHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 489999999964 553 355666777777999999999 66677888999998864
No 247
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.94 E-value=0.0028 Score=60.73 Aligned_cols=26 Identities=38% Similarity=0.617 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+..-+.|.||+|+|||||.++++...
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34457899999999999999999754
No 248
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.94 E-value=0.00059 Score=63.56 Aligned_cols=44 Identities=14% Similarity=0.154 Sum_probs=31.1
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcch
Q 010509 204 INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPSN 249 (508)
Q Consensus 204 ~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~~ 249 (508)
.+|.++++||.-. +|......+.+.+.+. ..+..+|++++++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~-~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEP-PEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSC-CTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcC-CCceEEEEEeCChHh
Confidence 3578999999765 7877777776666442 236778888887653
No 249
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.92 E-value=0.00037 Score=64.73 Aligned_cols=21 Identities=29% Similarity=0.620 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhc
Q 010509 79 MLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g 99 (508)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999999
No 250
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=96.91 E-value=0.00032 Score=72.90 Aligned_cols=43 Identities=16% Similarity=0.323 Sum_probs=34.9
Q ss_pred EEEEeCCeEEEEECCCCCcHHHHHHHHhcC-----------CCCcccEEEECCE
Q 010509 71 TGMVKPGEMLAMLGPSGCGKTTLLTALGGR-----------LGRINGRITYNGK 113 (508)
Q Consensus 71 s~~v~~Ge~~ailG~nGsGKSTLL~~L~g~-----------~~~~~G~I~~~G~ 113 (508)
-+.+..|..++|+|+||+|||||+|+|+|. ..|..|.+.+.|.
T Consensus 16 ~g~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 16 IGRFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CCCSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred HhhccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 345678889999999999999999999997 4577788887764
No 251
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.88 E-value=0.0096 Score=59.76 Aligned_cols=27 Identities=30% Similarity=0.529 Sum_probs=23.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+..-+.|.||+|+|||||.++++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 456678899999999999999999864
No 252
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.87 E-value=0.016 Score=61.79 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=28.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-|+.+.+-+++|+++.|.|++|+|||||+--++-.
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence 45555556999999999999999999998777653
No 253
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.81 E-value=0.0029 Score=76.40 Aligned_cols=29 Identities=28% Similarity=0.415 Sum_probs=26.6
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
=+++|+++.|.||+|+|||||+..++...
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~a 756 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHH
Confidence 59999999999999999999999998754
No 254
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.81 E-value=0.003 Score=60.99 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHHh---hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcC---CCEEEEEecCc
Q 010509 190 GGERKRVSIGQEIL---INPSLLFLDEPTSGLDSTIAQQILSILLKLANG---GRTIVMTIHQP 247 (508)
Q Consensus 190 GGerqRv~Ia~aL~---~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~---g~tii~s~H~~ 247 (508)
.|++.+-.+.+++. .+|+++++--+.+.++. ....+++.++++... +.++|+++|-.
T Consensus 87 ~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~-~~~~~~~~l~~~~~~~~~~~~iilv~nK~ 149 (247)
T 3lxw_A 87 KTDPGCEERGHCYLLSAPGPHALLLVTQLGRFTA-QDQQAVRQVRDMFGEDVLKWMVIVFTRKE 149 (247)
T ss_dssp HHSTTSHHHHHHHHHHTTCCSEEEEEEETTBCCH-HHHHHHHHHHHHHCGGGGGGEEEEEECGG
T ss_pred cHHHHHHHHHHHHHhcCCCCCEEEEEEeCCCCCH-HHHHHHHHHHHHhChhhhccEEEEEEchH
Confidence 33444445555553 67887766555555554 445666777665422 67899999864
No 255
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.79 E-value=0.00068 Score=62.37 Aligned_cols=36 Identities=39% Similarity=0.325 Sum_probs=28.2
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCC---CcccEEEECCE
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRLG---RINGRITYNGK 113 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~~---~~~G~I~~~G~ 113 (508)
.+++|.|+||||||||++.|.+.+. ..-|.|..+++
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 5789999999999999999998652 23466766554
No 256
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.75 E-value=0.00069 Score=61.67 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999964
No 257
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.73 E-value=0.00077 Score=61.39 Aligned_cols=27 Identities=37% Similarity=0.640 Sum_probs=23.4
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998643
No 258
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.71 E-value=0.00014 Score=74.32 Aligned_cols=38 Identities=18% Similarity=0.369 Sum_probs=34.0
Q ss_pred ceeeeceEEEEeCCeE--EEEECCCCCcHHHHHHHHhcCC
Q 010509 64 KAILKGITGMVKPGEM--LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~--~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..+++++++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 9 ~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 9 DDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3478888888999998 9999999999999999999865
No 259
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.69 E-value=0.00062 Score=65.99 Aligned_cols=46 Identities=24% Similarity=0.335 Sum_probs=34.9
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeC
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPF 115 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~ 115 (508)
+++.+ ..+++.++.|+|+|||||||+.+.|+..++ .|.+.++|..+
T Consensus 23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 23 TRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp HTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred HccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 33333 456788999999999999999999998764 24567776543
No 260
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.68 E-value=0.00068 Score=62.93 Aligned_cols=25 Identities=24% Similarity=0.403 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..+++|.|++||||||+.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999865
No 261
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.64 E-value=0.004 Score=54.81 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=29.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 205 NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 205 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
+..+|++||.- .|++..+..+.+.|... ..+..+|++|+.+.
T Consensus 76 ~~g~l~ldei~-~l~~~~q~~Ll~~l~~~-~~~~~~I~~t~~~~ 117 (145)
T 3n70_A 76 QGGTLVLSHPE-HLTREQQYHLVQLQSQE-HRPFRLIGIGDTSL 117 (145)
T ss_dssp TTSCEEEECGG-GSCHHHHHHHHHHHHSS-SCSSCEEEEESSCH
T ss_pred CCcEEEEcChH-HCCHHHHHHHHHHHhhc-CCCEEEEEECCcCH
Confidence 44689999984 68888888888888332 22456777776643
No 262
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.62 E-value=0.00069 Score=64.97 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=29.4
Q ss_pred HHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEEEec
Q 010509 199 GQEILINPSLLFLDEPTS-GLDSTIAQQILSILLKLANGGRTIVMTIH 245 (508)
Q Consensus 199 a~aL~~~P~illLDEPts-gLD~~~~~~i~~~L~~l~~~g~tii~s~H 245 (508)
..++..+|+++++||+-. ..+........+.+..+...|..++.++|
T Consensus 78 ~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sgidVitT~N 125 (228)
T 2r8r_A 78 DALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAGIDVYTTVN 125 (228)
T ss_dssp HHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCCCCEEEEcc
Confidence 334557899999999763 23322222333334445557889999998
No 263
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.60 E-value=0.0031 Score=63.62 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=28.0
Q ss_pred eeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 67 LKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 67 L~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
|+.+-+-+.+|.++.|.||+|+|||||...++..
T Consensus 113 LD~lLGGi~~gsviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 113 VAEFGGHRYASGMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEETTEEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred HHHHhCCCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence 3333367889999999999999999999999853
No 264
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.57 E-value=0.0011 Score=59.15 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++|.|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999764
No 265
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.55 E-value=0.0037 Score=64.19 Aligned_cols=28 Identities=36% Similarity=0.559 Sum_probs=25.0
Q ss_pred EEEeCCeEEEEECCCCCcHHHHHHHHhc
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL~~L~g 99 (508)
+-+++|+++.|.||+|+|||||...++.
T Consensus 69 GGl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 69 GGIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SSEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 3689999999999999999999877764
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.55 E-value=0.0013 Score=59.35 Aligned_cols=26 Identities=27% Similarity=0.417 Sum_probs=23.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
|.++.|.|++||||||+.+.|+..++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998764
No 267
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.51 E-value=0.0012 Score=62.97 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=24.8
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.-.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34678899999999999999999999854
No 268
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.49 E-value=0.00062 Score=65.67 Aligned_cols=25 Identities=32% Similarity=0.562 Sum_probs=22.1
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.-+++|.||+||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999654
No 269
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.45 E-value=0.0015 Score=65.32 Aligned_cols=25 Identities=36% Similarity=0.507 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.-+.|.||+|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999754
No 270
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.41 E-value=0.0017 Score=59.04 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.6
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
|.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
No 271
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.36 E-value=0.0051 Score=53.99 Aligned_cols=42 Identities=12% Similarity=0.157 Sum_probs=30.6
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCc
Q 010509 205 NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247 (508)
Q Consensus 205 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~ 247 (508)
+..++++||.- .|+...+..+.+.+.+-.+.+..+|++|+.+
T Consensus 75 ~~~~l~lDei~-~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 75 EGGVLYVGDIA-QYSRNIQTGITFIIGKAERCRVRVIASCSYA 116 (143)
T ss_dssp TTSEEEEEECT-TCCHHHHHHHHHHHHHHTTTTCEEEEEEEEC
T ss_pred CCCeEEEeChH-HCCHHHHHHHHHHHHhCCCCCEEEEEecCCC
Confidence 35689999964 6788888888888877544456677777654
No 272
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.32 E-value=0.0019 Score=58.86 Aligned_cols=27 Identities=33% Similarity=0.452 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++.++.|.|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999998754
No 273
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.29 E-value=0.013 Score=58.88 Aligned_cols=27 Identities=30% Similarity=0.472 Sum_probs=21.8
Q ss_pred EEEeCCeEEEEECCCCCcHHHHH-HHHhc
Q 010509 72 GMVKPGEMLAMLGPSGCGKTTLL-TALGG 99 (508)
Q Consensus 72 ~~v~~Ge~~ailG~nGsGKSTLL-~~L~g 99 (508)
+=+++| ++.|-||+|+|||||+ .+++.
T Consensus 24 GGl~~G-iteI~G~pGsGKTtL~Lq~~~~ 51 (333)
T 3io5_A 24 GGMQSG-LLILAGPSKSFKSNFGLTMVSS 51 (333)
T ss_dssp CCBCSE-EEEEEESSSSSHHHHHHHHHHH
T ss_pred CCCcCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 457899 9999999999999994 44443
No 274
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.28 E-value=0.002 Score=62.55 Aligned_cols=24 Identities=21% Similarity=0.386 Sum_probs=21.6
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+++|+||||||||||.+.|++..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999999864
No 275
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.26 E-value=0.0038 Score=56.88 Aligned_cols=35 Identities=20% Similarity=0.341 Sum_probs=25.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC-----CCccc----EEEECCE
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL-----GRING----RITYNGK 113 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~-----~~~~G----~I~~~G~ 113 (508)
-++|+|++|+|||||++.+.+.. .++.| .+.++|+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~ 65 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQ 65 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCE
Confidence 47899999999999998776642 35555 4555554
No 276
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.23 E-value=0.0023 Score=56.83 Aligned_cols=19 Identities=26% Similarity=0.537 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 010509 79 MLAMLGPSGCGKTTLLTAL 97 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L 97 (508)
+++|.|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 277
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.23 E-value=0.0024 Score=63.30 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=28.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNG 112 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G 112 (508)
..|.++.|.|||||||||+.+.|+...+ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3577999999999999999999987543 25566664
No 278
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.20 E-value=0.00069 Score=63.09 Aligned_cols=25 Identities=36% Similarity=0.644 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCCCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRLGR 103 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~~~ 103 (508)
+++|.|++||||||+++.|+..+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987643
No 279
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.20 E-value=0.0027 Score=58.51 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+|.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
No 280
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.17 E-value=0.0027 Score=59.53 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=21.9
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhc
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g 99 (508)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999997
No 281
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.17 E-value=0.0027 Score=57.67 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++..+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 46689999999999999999998754
No 282
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.16 E-value=0.0031 Score=58.30 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=24.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
+|.+++|.|++||||||+.+.|+..++
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 477899999999999999999998654
No 283
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.12 E-value=0.0026 Score=59.06 Aligned_cols=23 Identities=43% Similarity=0.647 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+.|+||||||||||++.|....
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 36899999999999999987543
No 284
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.12 E-value=0.0029 Score=58.13 Aligned_cols=23 Identities=30% Similarity=0.652 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999865
No 285
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.12 E-value=0.013 Score=59.70 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=22.9
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++..-+.|.||+|+|||||.++++...
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~ 108 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEA 108 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHh
Confidence 455568899999999999999999764
No 286
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.11 E-value=0.016 Score=70.90 Aligned_cols=153 Identities=18% Similarity=0.230 Sum_probs=86.7
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 66 ILKGIT--GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 66 iL~~vs--~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
-|+.+- +=+++|+++.|.||+|+|||||...++....... ..+.|+.-+...-+ ++
T Consensus 370 ~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G---------------~~vlyis~E~s~~~---~~---- 427 (2050)
T 3cmu_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREG---------------KTCAFIDAEHALDP---IY---- 427 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTT---------------CCEEEECTTSCCCH---HH----
T ss_pred HHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcC---------------CeEEEEEcCCCHHH---HH----
Confidence 455554 3599999999999999999999887775432111 12444443322111 00
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCC-H
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL--INPSLLFLDEPTSGLD-S 220 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~--~~P~illLDEPtsgLD-~ 220 (508)
+.. +|+.. .+-.+-+ .-+. .+-+.+++.++ .+|+++++|.-++=.. +
T Consensus 428 -a~~----------------------lGvd~-~~L~I~~----~~~~--e~il~~~~~lv~~~~~~lIVIDSL~al~~~~ 477 (2050)
T 3cmu_A 428 -ARK----------------------LGVDI-DNLLCSQ----PDTG--EQALEICDALARSGAVDVIVVDSVAALTPKA 477 (2050)
T ss_dssp -HHH----------------------TTCCT-TTCEEEC----CSSH--HHHHHHHHHHHHHTCCSEEEESCGGGCCCHH
T ss_pred -HHH----------------------cCCCH-HHeEEeC----CCCH--HHHHHHHHHHHHhcCCcEEEECCHHHhhccc
Confidence 111 12110 0001111 1233 23445666665 4799999999876542 1
Q ss_pred ------------HHHHHHHHHHHHH---H-cCCCEEEEEecCcch---------------HHHhhccEEEEEeCCeEEEE
Q 010509 221 ------------TIAQQILSILLKL---A-NGGRTIVMTIHQPSN---------------MLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 221 ------------~~~~~i~~~L~~l---~-~~g~tii~s~H~~~~---------------~~~~~~D~v~lL~~G~iv~~ 269 (508)
..+..+.+.|++| + +.|.+||++.|--.. .+.+.+|-++.|+.......
T Consensus 478 e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g~p~~psGg~ale~~ADv~l~L~R~~~~~~ 557 (2050)
T 3cmu_A 478 EIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE 557 (2050)
T ss_dssp HHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSSCCEECSSHHHHHHHEEEEEEEEEEEEEEE
T ss_pred ccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccCCCcCCCCcchhhhhCCEEEEEEecccccC
Confidence 1233455666666 4 458999998874221 36678899998876654444
Q ss_pred c
Q 010509 270 G 270 (508)
Q Consensus 270 G 270 (508)
|
T Consensus 558 g 558 (2050)
T 3cmu_A 558 G 558 (2050)
T ss_dssp T
T ss_pred C
Confidence 3
No 287
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.11 E-value=0.0026 Score=57.69 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++..+.|.|++||||||+.+.|+..+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998543
No 288
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.09 E-value=0.0031 Score=57.16 Aligned_cols=23 Identities=39% Similarity=0.528 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999863
No 289
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.08 E-value=0.0067 Score=64.73 Aligned_cols=28 Identities=36% Similarity=0.610 Sum_probs=23.7
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++..-+.|.||+|+|||+|.++|+...
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~ 262 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANET 262 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence 3455668999999999999999998754
No 290
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.07 E-value=0.0034 Score=56.39 Aligned_cols=22 Identities=23% Similarity=0.422 Sum_probs=20.4
Q ss_pred eEEEEECCCCCcHHHHHHHHhc
Q 010509 78 EMLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g 99 (508)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999986
No 291
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.02 E-value=0.0034 Score=58.20 Aligned_cols=27 Identities=30% Similarity=0.356 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999999998754
No 292
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.01 E-value=0.0099 Score=62.60 Aligned_cols=54 Identities=7% Similarity=0.133 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 191 GERKRVSIGQEILINPSLLFLDEPTS-GLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 191 GerqRv~Ia~aL~~~P~illLDEPts-gLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
.+++....+...+.+++++++....+ ++.... ..+.+.|+ +.++.+|++.+..+
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~---~~~~pvilV~NK~D 142 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILY---RTKKPVVLAVNKLD 142 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHT---TCCSCEEEEEECC-
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHH---HcCCCEEEEEECcc
Confidence 36666677777788888776655544 555443 44555544 35778887777643
No 293
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.01 E-value=0.0046 Score=63.46 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=29.4
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcC-----------CCCcccEEEECC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGR-----------LGRINGRITYNG 112 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~-----------~~~~~G~I~~~G 112 (508)
|-.++|+|.+|+|||||+|.|+|. ..|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 346899999999999999999983 246678887766
No 294
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.00 E-value=0.0021 Score=66.23 Aligned_cols=45 Identities=9% Similarity=0.117 Sum_probs=38.8
Q ss_pred CCCEEEEeCCCCCCC---HHHHHHHHHHHHHHHcCCCEEEEEecCcch
Q 010509 205 NPSLLFLDEPTSGLD---STIAQQILSILLKLANGGRTIVMTIHQPSN 249 (508)
Q Consensus 205 ~P~illLDEPtsgLD---~~~~~~i~~~L~~l~~~g~tii~s~H~~~~ 249 (508)
.|.++++||-=.=++ +..+..+.+.+++.++.|..++++||.|+.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d 309 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVID 309 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHH
Confidence 588999999977774 677788888899988889999999999975
No 295
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.00 E-value=0.0058 Score=56.96 Aligned_cols=53 Identities=23% Similarity=0.307 Sum_probs=41.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEec---------CcchHHHhhccEEEEEe
Q 010509 205 NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH---------QPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 205 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H---------~~~~~~~~~~D~v~lL~ 262 (508)
+.+++++||--- +|+. .++.++++++.|..||++-+ .++..+..++|.|.-|+
T Consensus 81 ~~dvViIDEaqf-l~~~----~v~~l~~l~~~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 81 DTEVIAIDEVQF-FDDE----IVEIVNKIAESGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TCSEEEECSGGG-SCTH----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred cCCEEEEECCCC-CCHH----HHHHHHHHHhCCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 479999999543 6533 36677887777999999999 55677889999997765
No 296
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.97 E-value=0.0034 Score=57.32 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 367799999999999999999998654
No 297
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.97 E-value=0.0035 Score=56.63 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48899999999999999999765
No 298
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.94 E-value=0.0032 Score=61.47 Aligned_cols=44 Identities=11% Similarity=0.117 Sum_probs=30.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcchHHHhhccEE
Q 010509 214 PTSGLDSTIAQQILSILLKLANG-GRTIVMTIHQPSNMLYYMFHKV 258 (508)
Q Consensus 214 PtsgLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~~~~~~~D~v 258 (508)
|||+++.....++.+.+.++.++ +.+..+..|... .+.+.++++
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~-~~e~~~~~l 188 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDE-DIEREIKHI 188 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCH-HHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCH-HHHHHHHHH
Confidence 89999999999999998887653 444455566543 455555543
No 299
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=95.93 E-value=0.0039 Score=57.24 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.8
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
..+++|.|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 357999999999999999999975
No 300
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.90 E-value=0.004 Score=57.77 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=24.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|.+++|.|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999999654
No 301
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.90 E-value=0.0047 Score=56.15 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=22.1
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998643
No 302
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.89 E-value=0.072 Score=64.44 Aligned_cols=153 Identities=20% Similarity=0.255 Sum_probs=86.8
Q ss_pred eeeceE--EEEeCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEEEECCEeCChhccccEEEEecCCCCCCCCCHHHHHH
Q 010509 66 ILKGIT--GMVKPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRITYNGKPFSNQMTRNTGFVTQEDVLSPYLTVTETMV 143 (508)
Q Consensus 66 iL~~vs--~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I~~~G~~~~~~~~~~i~yv~Q~~~l~~~lTv~E~l~ 143 (508)
-|+.+- +=+++|+++.|.||+|+|||||.-.++...... | ..+.|+.-+...-+ + .
T Consensus 370 ~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~~~~~-------G--------~~vlyis~E~s~~~---~----~ 427 (1706)
T 3cmw_A 370 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE-------G--------KTCAFIDAEHALDP---I----Y 427 (1706)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHT-------T--------CCEEEECTTSCCCH---H----H
T ss_pred HHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-------C--------CCeEEEEccCchHH---H----H
Confidence 456654 358999999999999999999987776532111 1 23555554432211 0 0
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCH-
Q 010509 144 FTALLQLPNSFTEKEKIKCAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEIL--INPSLLFLDEPTSGLDS- 220 (508)
Q Consensus 144 ~~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~--~~P~illLDEPtsgLD~- 220 (508)
+ +.+|+.. .+-.+-+ .-++.| -+.+++.++ .+|+++++|..++=...
T Consensus 428 -a----------------------~~lGvd~-~~L~i~~----~~~~e~--~l~~l~~lv~~~~~~lVVIDSL~al~~~~ 477 (1706)
T 3cmw_A 428 -A----------------------RKLGVDI-DNLLCSQ----PDTGEQ--ALEICDALARSGAVDVIVVDSVAALTPKA 477 (1706)
T ss_dssp -H----------------------HHTTCCG-GGCEEEC----CSSHHH--HHHHHHHHHHHTCCSEEEESCSTTCCCHH
T ss_pred -H----------------------HHcCCCH-HHeEEcC----CCCHHH--HHHHHHHHHHhcCCCEEEECCHHHhhccc
Confidence 1 1122211 0001110 113333 234555554 47999999999876541
Q ss_pred ------------HHHHHHHHHHHHH---H-cCCCEEEEEecCcc---------------hHHHhhccEEEEEeCCeEEEE
Q 010509 221 ------------TIAQQILSILLKL---A-NGGRTIVMTIHQPS---------------NMLYYMFHKVLLLSEGYPLYS 269 (508)
Q Consensus 221 ------------~~~~~i~~~L~~l---~-~~g~tii~s~H~~~---------------~~~~~~~D~v~lL~~G~iv~~ 269 (508)
.....+.+.+++| + +.|.+||++.|-.. ..+.+.+|-++.+...+.+..
T Consensus 478 e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~~~~ 557 (1706)
T 3cmw_A 478 EIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKE 557 (1706)
T ss_dssp HHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEEEE
T ss_pred cccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEecccccc
Confidence 1223345555555 3 35999999988421 246678998888876554444
Q ss_pred c
Q 010509 270 G 270 (508)
Q Consensus 270 G 270 (508)
|
T Consensus 558 g 558 (1706)
T 3cmw_A 558 G 558 (1706)
T ss_dssp T
T ss_pred C
Confidence 4
No 303
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=95.86 E-value=0.037 Score=56.79 Aligned_cols=27 Identities=37% Similarity=0.614 Sum_probs=23.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++.-+.|.||+|+|||+|.++|+...
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~ 172 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAES 172 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhh
Confidence 356789999999999999999998764
No 304
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.83 E-value=0.0042 Score=56.33 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++.|.|++||||||+.+.|+..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999765
No 305
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.80 E-value=0.029 Score=58.77 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=23.2
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++-.=+.+-||+|+|||+|.+++|+..
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHh
Confidence 3444557889999999999999999864
No 306
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.76 E-value=0.0049 Score=56.38 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=21.5
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+++|+|++|||||||++.|+..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 378999999999999999999865
No 307
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.73 E-value=0.0057 Score=57.44 Aligned_cols=27 Identities=30% Similarity=0.530 Sum_probs=23.3
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|..+.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999998754
No 308
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.73 E-value=0.0046 Score=56.10 Aligned_cols=24 Identities=38% Similarity=0.540 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-.++|+|++|+|||||++.|.+..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999999864
No 309
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.72 E-value=0.0085 Score=60.16 Aligned_cols=37 Identities=30% Similarity=0.302 Sum_probs=33.1
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
....+|+....+ .|.-++|.|+||+|||||...|.++
T Consensus 131 ~~~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 131 RTTSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred cceeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhc
Confidence 457899988888 8999999999999999999999875
No 310
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.71 E-value=0.0048 Score=54.19 Aligned_cols=23 Identities=13% Similarity=0.407 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999999853
No 311
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.71 E-value=0.0043 Score=56.82 Aligned_cols=27 Identities=22% Similarity=0.395 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++.+++|.|++||||||+.+.|+..+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 467799999999999999999998754
No 312
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.71 E-value=0.0055 Score=54.31 Aligned_cols=23 Identities=35% Similarity=0.681 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37899999999999999999864
No 313
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.70 E-value=0.0056 Score=53.90 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++++|++|+|||||++.+.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999984
No 314
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.69 E-value=0.051 Score=57.00 Aligned_cols=70 Identities=20% Similarity=0.395 Sum_probs=43.6
Q ss_pred HHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHHHc----CCCEEEEEecCcchHHHhhccEEEEEeCC
Q 010509 199 GQEILINPSLLFLDEPTS----------GLDSTIAQQILSILLKLAN----GGRTIVMTIHQPSNMLYYMFHKVLLLSEG 264 (508)
Q Consensus 199 a~aL~~~P~illLDEPts----------gLD~~~~~~i~~~L~~l~~----~g~tii~s~H~~~~~~~~~~D~v~lL~~G 264 (508)
..|-...|.|+|+||--+ +-|......+.++|..+-. .+..||.+|+.|.. .|.- ++..|
T Consensus 268 ~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~-----LDpA-llRpG 341 (437)
T 4b4t_L 268 AYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT-----LDPA-LLRPG 341 (437)
T ss_dssp HHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS-----SCTT-TTSTT
T ss_pred HHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh-----hCHH-HhCCC
Confidence 334456799999999843 2344455566677777632 35789999998863 2332 23455
Q ss_pred e---EEEEcChhh
Q 010509 265 Y---PLYSGEASG 274 (508)
Q Consensus 265 ~---iv~~G~~~~ 274 (508)
| .++.+.|+.
T Consensus 342 RfD~~I~i~lPd~ 354 (437)
T 4b4t_L 342 RLDRKVEIPLPNE 354 (437)
T ss_dssp SEEEEECCCCCCH
T ss_pred ccceeeecCCcCH
Confidence 4 366676653
No 315
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.68 E-value=0.0045 Score=54.42 Aligned_cols=22 Identities=36% Similarity=0.688 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|+|++|+|||||++.+.|..
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEECCCCCCHHHHHHHHcCcc
Confidence 6899999999999999999864
No 316
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.67 E-value=0.0056 Score=56.32 Aligned_cols=22 Identities=41% Similarity=0.732 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.|.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 4799999999999999999864
No 317
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.63 E-value=0.0055 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++++|++|+|||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998753
No 318
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.62 E-value=0.026 Score=53.51 Aligned_cols=53 Identities=21% Similarity=0.261 Sum_probs=43.0
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEec---------CcchHHHhhccEEEEEe
Q 010509 205 NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIH---------QPSNMLYYMFHKVLLLS 262 (508)
Q Consensus 205 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H---------~~~~~~~~~~D~v~lL~ 262 (508)
+.+++++||--- +|.. .++.|++++..|..||++-+ .++..+..++|.|.-|+
T Consensus 101 ~~dvViIDEaQF-~~~~----~V~~l~~l~~~~~~Vi~~Gl~~DF~~~~F~~~~~Ll~~AD~Vtel~ 162 (214)
T 2j9r_A 101 EMDVIAIDEVQF-FDGD----IVEVVQVLANRGYRVIVAGLDQDFRGLPFGQVPQLMAIAEHVTKLQ 162 (214)
T ss_dssp SCCEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHhhCCCEEEEEecccccccCccccHHHHHHhcccEEeee
Confidence 579999999865 6533 33777787777999999999 77888889999998875
No 319
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.61 E-value=0.051 Score=56.38 Aligned_cols=48 Identities=27% Similarity=0.373 Sum_probs=32.0
Q ss_pred HHhhCCCEEEEeCCCCC----------CCHHHHHHHHHHHHHHH----cCCCEEEEEecCcc
Q 010509 201 EILINPSLLFLDEPTSG----------LDSTIAQQILSILLKLA----NGGRTIVMTIHQPS 248 (508)
Q Consensus 201 aL~~~P~illLDEPtsg----------LD~~~~~~i~~~L~~l~----~~g~tii~s~H~~~ 248 (508)
|--..|.|+|+||--+- =|......+.++|..+- ..+..||.+|+.|.
T Consensus 237 Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd 298 (405)
T 4b4t_J 237 AREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLD 298 (405)
T ss_dssp HHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSS
T ss_pred HHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChh
Confidence 33456999999996542 23445555666666663 23668899999886
No 320
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.61 E-value=0.0057 Score=53.39 Aligned_cols=23 Identities=22% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++++|++|+|||||++.+.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999864
No 321
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.60 E-value=0.0056 Score=53.54 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++++|++|+|||||++.+.+..
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999999753
No 322
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.60 E-value=0.0062 Score=53.68 Aligned_cols=22 Identities=41% Similarity=0.729 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|+|++|+|||||++.+.+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 6899999999999999998754
No 323
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.59 E-value=0.0052 Score=53.56 Aligned_cols=22 Identities=32% Similarity=0.487 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++++|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998754
No 324
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.58 E-value=0.0066 Score=55.43 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999765
No 325
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.57 E-value=0.0059 Score=54.33 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999999854
No 326
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.56 E-value=0.039 Score=57.77 Aligned_cols=27 Identities=33% Similarity=0.602 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++-.=+.+.||+|+|||+|.+++|+..
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~ 230 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANST 230 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344448899999999999999999864
No 327
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.55 E-value=0.0073 Score=58.67 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||+|.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999974
No 328
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.54 E-value=0.0062 Score=53.58 Aligned_cols=23 Identities=22% Similarity=0.458 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++++|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37999999999999999999864
No 329
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.53 E-value=0.0064 Score=56.04 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 78999999999999999999865
No 330
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.53 E-value=0.0049 Score=55.71 Aligned_cols=26 Identities=35% Similarity=0.494 Sum_probs=18.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++.++.|.|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 46789999999999999999998654
No 331
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.53 E-value=0.0063 Score=53.63 Aligned_cols=23 Identities=26% Similarity=0.362 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999999753
No 332
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.50 E-value=0.0064 Score=53.39 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++++|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
No 333
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.50 E-value=0.0068 Score=57.26 Aligned_cols=27 Identities=19% Similarity=0.286 Sum_probs=22.5
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++.+++|.|++||||||+.+.|+..+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 356789999999999999999999654
No 334
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.49 E-value=0.0065 Score=53.28 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++++|++|+|||||++.+.+.
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999875
No 335
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.49 E-value=0.0067 Score=59.59 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.|+|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 336
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.48 E-value=0.0065 Score=60.63 Aligned_cols=23 Identities=39% Similarity=0.595 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||+|.|.|..
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 78999999999999999999964
No 337
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.47 E-value=0.0067 Score=53.93 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|+|++|+|||||++.+.+..
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7999999999999999998753
No 338
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.47 E-value=0.006 Score=53.65 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|+|++|+|||||++.+.+..
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999999754
No 339
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.46 E-value=0.0084 Score=55.34 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=22.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+.+++|.|++||||||+.+.|+..+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45579999999999999999998754
No 340
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.45 E-value=0.0068 Score=53.93 Aligned_cols=23 Identities=35% Similarity=0.511 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998754
No 341
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.44 E-value=0.0063 Score=55.20 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.|.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999863
No 342
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.43 E-value=0.0092 Score=53.06 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=21.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.-.++|+|++|+|||||++.+.+..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4468999999999999999998853
No 343
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.41 E-value=0.052 Score=52.07 Aligned_cols=53 Identities=21% Similarity=0.245 Sum_probs=43.7
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecC---------cchHHHhhccEEEEEe
Q 010509 204 INPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQ---------PSNMLYYMFHKVLLLS 262 (508)
Q Consensus 204 ~~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~---------~~~~~~~~~D~v~lL~ 262 (508)
.+.+++++||----.| +.+.++.+++.|+.||++-++ +...+..++|.|.-|+
T Consensus 89 ~~~dvViIDEaQF~~~------v~el~~~l~~~gi~VI~~GL~~DF~~~~F~~~~~Ll~~AD~Vtelk 150 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD------IVEFCEAMANAGKTVIVAALDGTFQRKPFGAILNLVPLAESVVKLT 150 (234)
T ss_dssp TTCSEEEESSGGGCTT------HHHHHHHHHHTTCEEEEECCSBCTTSSBCTTGGGGGGGCSEEEECC
T ss_pred ccCCEEEEEchhhhhh------HHHHHHHHHhCCCEEEEEecccccccCCcccHHHHHHhcccEEeee
Confidence 6789999999876644 666666666689999999999 8888889999998874
No 344
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.40 E-value=0.0081 Score=55.99 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997644
No 345
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.39 E-value=0.0067 Score=53.94 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999999863
No 346
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.37 E-value=0.0069 Score=54.65 Aligned_cols=23 Identities=43% Similarity=0.572 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.+.+..
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58999999999999999999864
No 347
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.35 E-value=0.0087 Score=54.33 Aligned_cols=23 Identities=39% Similarity=0.452 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998754
No 348
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.35 E-value=0.0077 Score=52.83 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999974
No 349
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.33 E-value=0.0078 Score=53.99 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999999854
No 350
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.33 E-value=0.0078 Score=54.38 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 38999999999999999999864
No 351
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.32 E-value=0.0073 Score=54.32 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|+|++|+|||||++.+.+..
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999864
No 352
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.32 E-value=0.0089 Score=53.16 Aligned_cols=23 Identities=30% Similarity=0.495 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 37999999999999999999753
No 353
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.32 E-value=0.0096 Score=54.91 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..+++|.|++||||||+.+.|+..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4578999999999999999998654
No 354
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.31 E-value=0.014 Score=54.07 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37999999999999999998753
No 355
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.29 E-value=0.0083 Score=52.89 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++++|++|+|||||++.+.+.
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 356
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.28 E-value=0.0075 Score=56.67 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999998754
No 357
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.28 E-value=0.0082 Score=53.64 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998754
No 358
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.27 E-value=0.01 Score=53.08 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=21.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++++|.|+.||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 689999999999999999998754
No 359
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.26 E-value=0.0084 Score=53.89 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999743
No 360
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.25 E-value=0.0096 Score=55.54 Aligned_cols=23 Identities=26% Similarity=0.367 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998654
No 361
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.24 E-value=0.0088 Score=52.42 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++++|++|+|||||++.+.+.
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999999863
No 362
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.24 E-value=0.011 Score=57.36 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
++.++.|.|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999975
No 363
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.24 E-value=0.0086 Score=54.36 Aligned_cols=23 Identities=35% Similarity=0.582 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999999854
No 364
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.21 E-value=0.01 Score=53.71 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=21.9
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 3579999999999999999998643
No 365
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.20 E-value=0.011 Score=52.61 Aligned_cols=23 Identities=26% Similarity=0.330 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998754
No 366
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.20 E-value=0.0058 Score=54.73 Aligned_cols=23 Identities=39% Similarity=0.469 Sum_probs=20.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHhc
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g 99 (508)
.--++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34689999999999999999985
No 367
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.17 E-value=0.012 Score=56.63 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++-.++|.||+||||||+.+.|+..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56689999999999999999998643
No 368
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.16 E-value=0.0087 Score=54.29 Aligned_cols=24 Identities=29% Similarity=0.434 Sum_probs=21.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998754
No 369
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.15 E-value=0.01 Score=59.06 Aligned_cols=26 Identities=38% Similarity=0.589 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.| .++|+|++|+|||||+|.|.|..
T Consensus 6 ~~g-~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 6 YSG-FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEE-EEEEECSTTSSHHHHHHHHHTSC
T ss_pred cCC-EEEEECCCCCCHHHHHHHHhCCc
Confidence 345 58999999999999999999864
No 370
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=95.15 E-value=0.0086 Score=53.09 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
No 371
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.15 E-value=0.0095 Score=53.06 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
No 372
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=95.15 E-value=0.0096 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999999854
No 373
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=95.15 E-value=0.0096 Score=53.21 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 47999999999999999999753
No 374
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.12 E-value=0.01 Score=53.56 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.|..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 36899999999999999999875
No 375
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.09 E-value=0.01 Score=53.66 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++++|++|+|||||++.|.+..
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999854
No 376
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.08 E-value=0.01 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999754
No 377
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.06 E-value=0.0092 Score=58.27 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|+|++|+|||||+|.|.|..
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998854
No 378
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.01 E-value=0.012 Score=53.05 Aligned_cols=26 Identities=38% Similarity=0.479 Sum_probs=22.2
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.=-++++|++|+|||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999999754
No 379
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.00 E-value=0.011 Score=54.90 Aligned_cols=23 Identities=39% Similarity=0.570 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.|.+..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999864
No 380
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=95.00 E-value=0.011 Score=53.99 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37999999999999999998753
No 381
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.99 E-value=0.011 Score=54.04 Aligned_cols=23 Identities=35% Similarity=0.572 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999999854
No 382
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.98 E-value=0.01 Score=53.22 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 383
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.95 E-value=0.015 Score=51.90 Aligned_cols=27 Identities=26% Similarity=0.566 Sum_probs=23.1
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..+..+.|.||+|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998764
No 384
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.94 E-value=0.012 Score=53.33 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999999854
No 385
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.93 E-value=0.012 Score=53.30 Aligned_cols=22 Identities=36% Similarity=0.622 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHhcCC
Q 010509 80 LAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++|+|++|+|||||++.+.+..
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8999999999999999999854
No 386
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.92 E-value=0.023 Score=53.42 Aligned_cols=38 Identities=26% Similarity=0.296 Sum_probs=31.1
Q ss_pred cceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 63 EKAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 63 ~~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
....++..-..+ .|..++|+||+|+|||||...|+.+.
T Consensus 21 ~~~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 21 ERRSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCCCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred cceeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 345677766655 68899999999999999999999764
No 387
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.92 E-value=0.011 Score=53.66 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4899999999999999999874
No 388
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.89 E-value=0.012 Score=56.62 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.|.|..
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
No 389
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.88 E-value=0.012 Score=52.60 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 36899999999999999999753
No 390
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.87 E-value=0.013 Score=52.44 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++++|++|+|||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999864
No 391
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=94.87 E-value=0.011 Score=53.25 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999999853
No 392
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.86 E-value=0.014 Score=53.38 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999999854
No 393
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.85 E-value=0.014 Score=56.10 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=21.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-+++|.|++||||||+.+.|+..+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998854
No 394
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.83 E-value=0.012 Score=53.58 Aligned_cols=23 Identities=22% Similarity=0.486 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999998754
No 395
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.81 E-value=0.014 Score=54.76 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=22.5
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+|-.+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35578999999999999999998754
No 396
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.81 E-value=0.014 Score=56.63 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.|+|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999854
No 397
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.81 E-value=0.013 Score=53.36 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37999999999999999998753
No 398
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=94.79 E-value=0.012 Score=60.36 Aligned_cols=21 Identities=33% Similarity=0.567 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhcC
Q 010509 80 LAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 80 ~ailG~nGsGKSTLL~~L~g~ 100 (508)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999999984
No 399
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.79 E-value=0.016 Score=54.79 Aligned_cols=23 Identities=26% Similarity=0.489 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998654
No 400
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.79 E-value=0.016 Score=53.92 Aligned_cols=25 Identities=24% Similarity=0.404 Sum_probs=22.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
...+++|.|++||||||+.+.|+..
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3457899999999999999999865
No 401
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.78 E-value=0.014 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37999999999999999998743
No 402
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=94.76 E-value=0.042 Score=62.47 Aligned_cols=24 Identities=42% Similarity=0.709 Sum_probs=22.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..+.|.||+|+|||+|.+.|+...
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999865
No 403
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.76 E-value=0.014 Score=53.51 Aligned_cols=22 Identities=32% Similarity=0.638 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3899999999999999999973
No 404
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.75 E-value=0.014 Score=57.79 Aligned_cols=23 Identities=26% Similarity=0.551 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|||||||++.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999974
No 405
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.75 E-value=0.014 Score=54.36 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-.++|+|++|+|||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
No 406
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.75 E-value=0.014 Score=57.21 Aligned_cols=23 Identities=35% Similarity=0.625 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|||||||+|.|.|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
No 407
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.75 E-value=0.013 Score=53.82 Aligned_cols=23 Identities=26% Similarity=0.270 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 57999999999999999999864
No 408
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.72 E-value=0.015 Score=51.90 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
No 409
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.72 E-value=0.16 Score=53.35 Aligned_cols=27 Identities=33% Similarity=0.472 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
++.+++++|++|+||||+...|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999997653
No 410
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.70 E-value=0.013 Score=52.29 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999953
No 411
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.70 E-value=0.015 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.521 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999999754
No 412
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.70 E-value=0.015 Score=52.52 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999964
No 413
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.69 E-value=0.008 Score=55.92 Aligned_cols=23 Identities=30% Similarity=0.439 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.|.|..
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCS
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
No 414
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.68 E-value=0.012 Score=53.40 Aligned_cols=23 Identities=30% Similarity=0.382 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 415
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.68 E-value=0.015 Score=52.67 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999853
No 416
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.67 E-value=0.015 Score=53.41 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
No 417
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.66 E-value=0.014 Score=53.03 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 418
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.66 E-value=0.015 Score=52.66 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998743
No 419
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.66 E-value=0.019 Score=54.58 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=23.9
Q ss_pred EeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 74 VKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 74 v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++..++.|+||+||||+|..+.|+-.+
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3456788999999999999999999754
No 420
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.66 E-value=0.015 Score=52.40 Aligned_cols=23 Identities=30% Similarity=0.561 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999999854
No 421
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.66 E-value=0.016 Score=54.55 Aligned_cols=23 Identities=13% Similarity=0.359 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.+.+..
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998853
No 422
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.65 E-value=0.014 Score=53.63 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 423
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.63 E-value=0.016 Score=52.86 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999999853
No 424
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.63 E-value=0.017 Score=56.37 Aligned_cols=29 Identities=24% Similarity=0.469 Sum_probs=22.7
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCccc
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRLGRING 106 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~~~~~G 106 (508)
-.++++|.+|+|||||+|.|.|......|
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~ 128 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVG 128 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccC
Confidence 47899999999999999999997643334
No 425
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.62 E-value=0.016 Score=52.70 Aligned_cols=23 Identities=30% Similarity=0.437 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47899999999999999999854
No 426
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.61 E-value=0.018 Score=53.33 Aligned_cols=23 Identities=43% Similarity=0.507 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37999999999999999999854
No 427
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.61 E-value=0.016 Score=53.29 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.1
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
=-++|+|++|+|||||++.+.+..
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999999753
No 428
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.59 E-value=0.014 Score=52.47 Aligned_cols=23 Identities=26% Similarity=0.371 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999853
No 429
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.57 E-value=0.016 Score=52.96 Aligned_cols=23 Identities=22% Similarity=0.387 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57999999999999999998754
No 430
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.57 E-value=0.021 Score=53.90 Aligned_cols=27 Identities=37% Similarity=0.578 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-+|.++++.|++||||||+.+.|+..+
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998765
No 431
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.56 E-value=0.015 Score=55.55 Aligned_cols=29 Identities=34% Similarity=0.509 Sum_probs=21.9
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+..+|.++.+.|++||||||+.+.|+..+
T Consensus 21 ~m~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 21 SMARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp --CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999999998765
No 432
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.54 E-value=0.02 Score=56.27 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~ 100 (508)
.++.|.|++||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 47899999999999999999963
No 433
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.54 E-value=0.017 Score=56.78 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHhc
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGG 99 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g 99 (508)
..+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
No 434
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.52 E-value=0.024 Score=57.39 Aligned_cols=26 Identities=27% Similarity=0.597 Sum_probs=23.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++.++.|+||+|||||||-..|+..+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 45689999999999999999999876
No 435
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.51 E-value=0.021 Score=54.10 Aligned_cols=26 Identities=35% Similarity=0.560 Sum_probs=22.7
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+..+.|+|++||||||+.+.|+..+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45679999999999999999999754
No 436
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.51 E-value=0.018 Score=53.73 Aligned_cols=23 Identities=22% Similarity=0.276 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36899999999999999998754
No 437
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.50 E-value=0.014 Score=52.11 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++++|++|+|||||++.+.+..
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
No 438
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.48 E-value=0.02 Score=52.26 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999999753
No 439
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.47 E-value=0.016 Score=56.68 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.|.|..
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 440
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.44 E-value=0.017 Score=53.34 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999999854
No 441
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.44 E-value=0.11 Score=58.13 Aligned_cols=23 Identities=43% Similarity=0.742 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+.+.||+|+|||+|.++|+...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999865
No 442
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=94.43 E-value=0.011 Score=58.73 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=19.6
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++-+++|-||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998744
No 443
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.40 E-value=0.021 Score=52.20 Aligned_cols=23 Identities=13% Similarity=0.343 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~ 44 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKM 44 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 47899999999999999999865
No 444
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.39 E-value=0.019 Score=52.05 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 47999999999999999998753
No 445
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.38 E-value=0.019 Score=51.22 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=22.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..+..+.|.||+|+|||||++.++...
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345677899999999999999998764
No 446
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.37 E-value=0.02 Score=53.29 Aligned_cols=22 Identities=36% Similarity=0.794 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4799999999999999999974
No 447
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.34 E-value=0.02 Score=52.93 Aligned_cols=23 Identities=26% Similarity=0.294 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.+.+..
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999754
No 448
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.33 E-value=0.013 Score=52.45 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=9.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4799999999999999999864
No 449
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.31 E-value=0.018 Score=53.40 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999853
No 450
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.31 E-value=0.029 Score=52.93 Aligned_cols=60 Identities=22% Similarity=0.279 Sum_probs=40.4
Q ss_pred hhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHHHcC-CCEEEEEecCcch---------HHHhhccEEEEEe
Q 010509 203 LINPSLLFLDEPTS----GLDSTIAQQILSILLKLANG-GRTIVMTIHQPSN---------MLYYMFHKVLLLS 262 (508)
Q Consensus 203 ~~~P~illLDEPts----gLD~~~~~~i~~~L~~l~~~-g~tii~s~H~~~~---------~~~~~~D~v~lL~ 262 (508)
-.+|+++++|--+. .-|.....+++..|++++++ |.+++++.|.... .+...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 35788999986432 12445556777888887764 9999999886422 1345789888875
No 451
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.31 E-value=0.022 Score=59.35 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=23.8
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.+.+++.|+|++||||||+.+.|+..+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 467899999999999999999998654
No 452
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.29 E-value=0.019 Score=52.47 Aligned_cols=22 Identities=36% Similarity=0.434 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHCSS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999764
No 453
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.25 E-value=0.012 Score=62.29 Aligned_cols=35 Identities=23% Similarity=0.416 Sum_probs=28.8
Q ss_pred eeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 66 ILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 66 iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++.+ ..+-+|+..+|+|+||+|||||++.|++..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhh
Confidence 44444 456689999999999999999999998754
No 454
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.22 E-value=0.02 Score=52.58 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37999999999999999999853
No 455
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.19 E-value=0.025 Score=54.45 Aligned_cols=26 Identities=23% Similarity=0.432 Sum_probs=24.0
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+|.++++.|++||||||+.+.|+..+
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999999998865
No 456
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.18 E-value=0.019 Score=53.59 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=22.2
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.+++|.|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 3578999999999999999999865
No 457
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.17 E-value=0.022 Score=55.11 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.|.|..
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 46999999999999999999864
No 458
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.13 E-value=0.027 Score=52.95 Aligned_cols=23 Identities=39% Similarity=0.631 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
++.|+||+||||+|.-+.|+..+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999754
No 459
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.06 E-value=0.023 Score=51.52 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++++|++|+|||||++.+.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999975
No 460
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.05 E-value=0.024 Score=55.11 Aligned_cols=23 Identities=22% Similarity=0.528 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++++|++|+|||||++.|.|..
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
No 461
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.05 E-value=0.028 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.583 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999999743
No 462
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.00 E-value=0.029 Score=53.23 Aligned_cols=33 Identities=27% Similarity=0.361 Sum_probs=27.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCCCcccEE
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLGRINGRI 108 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~~~~G~I 108 (508)
++|.++.+.|++||||||+.+.|+..+.. .+.+
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~ 35 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 35 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceE
Confidence 36899999999999999999999987654 3443
No 463
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.99 E-value=0.028 Score=57.05 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
.+++|.||+|||||||.+.|+..++
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999998653
No 464
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=93.99 E-value=0.081 Score=64.87 Aligned_cols=36 Identities=28% Similarity=0.360 Sum_probs=30.7
Q ss_pred eeeceEE--EEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 66 ILKGITG--MVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 66 iL~~vs~--~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-|+.+.+ =+++|+++.|-|++|+|||||+..++...
T Consensus 719 eLD~llggGGl~~G~lilIaG~PG~GKTtLalqlA~~~ 756 (2050)
T 3cmu_A 719 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 756 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHhccCCcCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3566664 69999999999999999999999988754
No 465
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.97 E-value=0.013 Score=54.43 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998653
No 466
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.97 E-value=0.02 Score=55.40 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=24.0
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++.+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 577899999999999999999999865
No 467
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.95 E-value=0.03 Score=52.89 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=23.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+|.++.+-|++||||||+.+.|+..+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 48899999999999999999998865
No 468
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=93.93 E-value=0.032 Score=53.11 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=23.3
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.|.+++|-|+.||||||+.+.|+..+
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l 26 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence 36789999999999999999999865
No 469
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=93.91 E-value=0.034 Score=55.80 Aligned_cols=25 Identities=36% Similarity=0.644 Sum_probs=22.5
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+.+++|+||+|||||||...|+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999999765
No 470
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.88 E-value=0.036 Score=52.84 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=24.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
.+|.++.+.|++||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999987653
No 471
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.87 E-value=0.027 Score=52.53 Aligned_cols=24 Identities=33% Similarity=0.508 Sum_probs=20.8
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-.++|+|++|+|||||++.+++..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998753
No 472
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.86 E-value=0.028 Score=52.47 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 47999999999999999999854
No 473
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.85 E-value=0.019 Score=51.90 Aligned_cols=22 Identities=36% Similarity=0.428 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++++|++|+|||||++.+.+.
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
No 474
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.81 E-value=0.027 Score=51.81 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-++|+|++|+|||||++.+.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 47999999999999999998753
No 475
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.77 E-value=0.013 Score=53.38 Aligned_cols=22 Identities=23% Similarity=0.543 Sum_probs=4.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999875
No 476
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=93.70 E-value=0.055 Score=49.68 Aligned_cols=36 Identities=22% Similarity=0.117 Sum_probs=28.5
Q ss_pred ceeeeceEEEEeCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 64 KAILKGITGMVKPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 64 ~~iL~~vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
+..+|..-.. -.|.-++|.|+||+|||||...|..+
T Consensus 4 ~~~lHas~v~-v~G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 4 KQTWHANFLV-IDKMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp CEEEESEEEE-ETTEEEEEEESSSSSHHHHHHHHHHT
T ss_pred cEEEEEEEEE-ECCEEEEEEcCCCCCHHHHHHHHHHc
Confidence 4556665555 46889999999999999999888764
No 477
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=93.67 E-value=0.035 Score=55.91 Aligned_cols=25 Identities=36% Similarity=0.599 Sum_probs=22.3
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
.++.|+||+|||||||-+.|+..++
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998653
No 478
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.60 E-value=0.03 Score=51.59 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++++|++|+|||||++.+.+.
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5789999999999999999864
No 479
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.52 E-value=0.032 Score=51.41 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999999874
No 480
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.52 E-value=0.035 Score=51.72 Aligned_cols=22 Identities=36% Similarity=0.691 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999999875
No 481
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.51 E-value=0.11 Score=55.02 Aligned_cols=71 Identities=17% Similarity=0.226 Sum_probs=53.2
Q ss_pred CCccCHHHHHHHHHHHH--Hhh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCc
Q 010509 185 TRGVSGGERKRVSIGQE--ILI---------------NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQP 247 (508)
Q Consensus 185 ~~~LSGGerqRv~Ia~a--L~~---------------~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~ 247 (508)
..+.||||+|-.-+|.+ ++. .-.++++||. +-+|...+...+++++++ |.-+|+++-+
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l---glQliiatP~- 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL---DMQLLIAAPE- 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT---TCEEEEEESS-
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc---CCEEEEECcc-
Confidence 45899999996544433 322 1157999999 999999999999999987 7777777755
Q ss_pred chHHHhhccEEEEEe
Q 010509 248 SNMLYYMFHKVLLLS 262 (508)
Q Consensus 248 ~~~~~~~~D~v~lL~ 262 (508)
.+....|.++.+.
T Consensus 452 --~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 --NISPERGTTYKLV 464 (483)
T ss_dssp --SCCCSSSEEEECC
T ss_pred --hhhhccCceEEEE
Confidence 3556678877764
No 482
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=93.40 E-value=0.041 Score=56.64 Aligned_cols=37 Identities=32% Similarity=0.538 Sum_probs=29.8
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC-----------CCcccEEEECCEeC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL-----------GRINGRITYNGKPF 115 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~-----------~~~~G~I~~~G~~~ 115 (508)
-+||+|.+-+|||||+|.|+|.. .|..|.+.++|.++
T Consensus 74 ~V~ivG~PNvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~~~i 121 (376)
T 4a9a_A 74 SVGFVGFPSVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKGAKI 121 (376)
T ss_dssp EEEEECCCCHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETTEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCCcEE
Confidence 48999999999999999999954 24457788877653
No 483
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.36 E-value=0.053 Score=53.40 Aligned_cols=26 Identities=23% Similarity=0.295 Sum_probs=22.7
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
+-.++++|.+|+|||||+|.|.|...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 34689999999999999999999753
No 484
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.27 E-value=0.051 Score=54.42 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=22.3
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..++.|+||+|||||||...|+...
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 3578999999999999999999765
No 485
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.27 E-value=0.047 Score=50.15 Aligned_cols=53 Identities=13% Similarity=0.244 Sum_probs=38.8
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc---------hHHHhhccEEEEEe
Q 010509 205 NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPS---------NMLYYMFHKVLLLS 262 (508)
Q Consensus 205 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~---------~~~~~~~D~v~lL~ 262 (508)
+++++++||-=. +|+ .+++.|++++++|..|+++-++.+ ..+...+|.+.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~----~~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNP----SLFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCT----THHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCH----HHHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 443 366777777777999999988443 45566789887765
No 486
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=93.13 E-value=0.014 Score=66.06 Aligned_cols=32 Identities=31% Similarity=0.578 Sum_probs=28.7
Q ss_pred eEEEEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 70 ITGMVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 70 vs~~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++.+.+|+.++|.||||+|||||.++|++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~ 535 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 535 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHh
Confidence 45667899999999999999999999999875
No 487
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=93.04 E-value=0.045 Score=55.13 Aligned_cols=28 Identities=29% Similarity=0.548 Sum_probs=24.7
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRLG 102 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~~ 102 (508)
.+|..+.|.||+|+|||||.+.++....
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4567899999999999999999998764
No 488
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=92.97 E-value=0.052 Score=53.21 Aligned_cols=27 Identities=33% Similarity=0.548 Sum_probs=23.2
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
+++.-+.|.||+|+|||||.+.++..+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 355678999999999999999998765
No 489
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=92.94 E-value=0.053 Score=49.46 Aligned_cols=42 Identities=14% Similarity=0.231 Sum_probs=29.3
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHcCCCEEEEEecCcc
Q 010509 205 NPSLLFLDEPTSGLDSTIAQQILSILLKLANGGRTIVMTIHQPS 248 (508)
Q Consensus 205 ~P~illLDEPtsgLD~~~~~~i~~~L~~l~~~g~tii~s~H~~~ 248 (508)
++.++++||. ..++......+.+.+.+.. .+..+|++++.+.
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~-~~~~~i~~~~~~~ 143 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYS-KSCRFILSCNYVS 143 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTT-TTEEEEEEESCGG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcC-CCCeEEEEeCChh
Confidence 5789999995 4567777777777766532 3566777777654
No 490
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=92.92 E-value=0.073 Score=52.86 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=21.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
+--++|+|++|+|||||++.+.+.
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 345799999999999999998876
No 491
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=92.82 E-value=0.057 Score=56.02 Aligned_cols=25 Identities=24% Similarity=0.551 Sum_probs=22.0
Q ss_pred CeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 77 GEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 77 Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
-.+++|+||+|||||||.+.|+..+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHC
Confidence 3478999999999999999999765
No 492
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=92.81 E-value=0.056 Score=51.79 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.0
Q ss_pred eEEEEECCCCCcHHHHHHHHhcCC
Q 010509 78 EMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 78 e~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
--+||+|++||||||+.+.|+..+
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHh
Confidence 357999999999999999998754
No 493
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=92.72 E-value=0.027 Score=54.24 Aligned_cols=27 Identities=37% Similarity=0.709 Sum_probs=22.1
Q ss_pred EEeCCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 73 MVKPGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 73 ~v~~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
....| +.|.||+|+|||||.++|++..
T Consensus 42 ~~~~~--vll~G~~GtGKT~la~~la~~~ 68 (268)
T 2r62_A 42 KIPKG--VLLVGPPGTGKTLLAKAVAGEA 68 (268)
T ss_dssp CCCSC--CCCBCSSCSSHHHHHHHHHHHH
T ss_pred CCCce--EEEECCCCCcHHHHHHHHHHHh
Confidence 33445 7789999999999999999853
No 494
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.72 E-value=0.1 Score=54.51 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|.+++|||||+|.|.|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999853
No 495
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.64 E-value=0.065 Score=54.41 Aligned_cols=26 Identities=35% Similarity=0.552 Sum_probs=22.8
Q ss_pred CCeEEEEECCCCCcHHHHHHHHhcCC
Q 010509 76 PGEMLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 76 ~Ge~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
..-.++|+|++|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 44589999999999999999998764
No 496
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=92.64 E-value=0.053 Score=56.14 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCCcccccccCCCCCCccCHHHHHHHHHHHHHhhCCCEEEE
Q 010509 162 CAEAVMTELGLSECKNSLIGGPLTRGVSGGERKRVSIGQEILINPSLLFL 211 (508)
Q Consensus 162 ~v~~~l~~lgL~~~~~~~vg~~~~~~LSGGerqRv~Ia~aL~~~P~illL 211 (508)
.++++++.++.... ...+|.+|.+++.-..-+...|-++++
T Consensus 181 ~~~~~l~~l~~~~~---------~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPED---------PTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCSC---------GGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCCc---------cccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 45667777766543 126899998888777666778988887
No 497
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=92.63 E-value=0.039 Score=55.97 Aligned_cols=23 Identities=30% Similarity=0.550 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhcCC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGRL 101 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~~ 101 (508)
.++|+|++|+|||||++.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999964
No 498
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=92.57 E-value=0.053 Score=56.66 Aligned_cols=22 Identities=27% Similarity=0.688 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
.++|+|++|+|||||+|.|+|.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 499
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=91.74 E-value=0.022 Score=52.20 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhcC
Q 010509 79 MLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 79 ~~ailG~nGsGKSTLL~~L~g~ 100 (508)
-++|+|++|+|||||++.+.+.
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4899999999999999988753
No 500
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=92.48 E-value=0.068 Score=51.62 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.6
Q ss_pred eCCeEEEEECCCCCcHHHHHHHHhcC
Q 010509 75 KPGEMLAMLGPSGCGKTTLLTALGGR 100 (508)
Q Consensus 75 ~~Ge~~ailG~nGsGKSTLL~~L~g~ 100 (508)
.+..-+.|.||+|+|||||.++++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 45557889999999999999999975
Done!