Query 010510
Match_columns 508
No_of_seqs 162 out of 295
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 08:21:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010510.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010510hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fga_B Serine/threonine-protei 100.0 4E-145 1E-149 1135.8 35.2 401 98-500 1-402 (403)
2 2npp_B PP2A, B subunit, serine 100.0 5E-146 2E-150 1157.0 28.7 417 88-506 24-441 (449)
3 2jak_A Serine/threonine-protei 100.0 2E-130 7E-135 1022.2 33.8 356 88-445 36-392 (392)
4 1ibr_B P95, importin beta-1 su 93.7 1.8 6.2E-05 43.0 16.0 155 304-467 83-249 (462)
5 1qgr_A Protein (importin beta 92.2 15 0.00052 39.8 22.3 231 228-464 218-479 (876)
6 2bpt_A Importin beta-1 subunit 89.5 26 0.00089 37.8 23.3 263 197-464 175-482 (861)
7 2bpt_A Importin beta-1 subunit 89.2 12 0.00041 40.5 17.5 92 369-464 576-668 (861)
8 2qk2_A LP04448P; mini spindles 86.7 12 0.00042 34.5 13.8 177 232-415 20-200 (242)
9 2x19_B Importin-13; nuclear tr 86.3 16 0.00053 40.8 16.6 204 230-476 689-906 (963)
10 1qgr_A Protein (importin beta 86.2 34 0.0012 37.0 18.9 92 370-463 585-678 (876)
11 2qk1_A Protein STU2; STU2P, XM 85.2 17 0.00059 34.6 14.3 180 234-415 23-215 (249)
12 4fdd_A Transportin-1; heat rep 84.3 7.9 0.00027 42.7 12.9 224 229-472 15-252 (852)
13 2of3_A ZYG-9; multifunctional 79.2 34 0.0011 33.7 14.0 144 300-478 28-177 (266)
14 2jdq_A Importin alpha-1 subuni 76.9 45 0.0015 32.8 14.4 231 220-464 100-347 (450)
15 4fdd_A Transportin-1; heat rep 74.2 1.1E+02 0.0037 33.6 24.5 242 226-470 482-748 (852)
16 1u6g_C TIP120 protein, CAND1; 72.2 47 0.0016 38.2 14.8 98 366-465 494-599 (1230)
17 2km4_A Regulator of TY1 transp 67.3 14 0.00049 32.7 7.3 84 337-420 26-118 (142)
18 1u6g_C TIP120 protein, CAND1; 59.0 87 0.003 36.0 13.7 178 228-413 7-197 (1230)
19 4fu3_A Regulation of nuclear P 57.9 21 0.00071 30.8 6.4 85 333-417 23-113 (135)
20 2vgl_B AP-2 complex subunit be 56.9 1E+02 0.0036 32.6 13.0 175 227-416 353-528 (591)
21 1wa5_B Importin alpha subunit; 53.9 1.1E+02 0.0038 31.4 12.3 227 222-463 168-411 (530)
22 2qk1_A Protein STU2; STU2P, XM 53.9 75 0.0026 30.0 10.2 87 372-464 127-220 (249)
23 2x1g_F Cadmus; transport prote 49.4 2E+02 0.0068 32.0 14.3 80 389-472 827-914 (971)
24 4b8j_A Importin subunit alpha- 48.7 2.3E+02 0.0079 28.8 15.0 104 218-322 151-255 (528)
25 3tjz_B Coatomer subunit gamma; 45.7 2.6E+02 0.0088 28.4 17.0 159 282-478 59-219 (355)
26 1wa5_C Importin alpha RE-expor 43.0 4E+02 0.014 29.8 20.7 33 226-258 122-154 (960)
27 1wa5_C Importin alpha RE-expor 42.6 2.3E+02 0.008 31.7 13.5 72 228-299 549-629 (960)
28 3u0r_A Apoptosis inhibitor 5; 42.2 1.8E+02 0.0062 31.3 11.7 57 346-402 261-323 (507)
29 2qk2_A LP04448P; mini spindles 41.8 64 0.0022 29.5 7.4 91 368-465 34-128 (242)
30 1ibr_B P95, importin beta-1 su 40.8 2.6E+02 0.009 27.1 16.1 27 391-417 259-285 (462)
31 1eyh_A Epsin; superhelix of he 40.1 2E+02 0.0069 25.6 10.8 108 348-464 7-122 (144)
32 1w63_A Adapter-related protein 39.4 2.7E+02 0.0094 29.6 12.9 174 229-417 387-574 (618)
33 2x19_B Importin-13; nuclear tr 37.8 1.3E+02 0.0044 33.4 10.3 28 390-417 334-366 (963)
34 3onk_A Epsin-3, ENT3; helix, p 34.3 1.1E+02 0.0037 27.6 7.4 109 348-464 13-129 (150)
35 1sz9_A PCF11 protein; RNA poly 30.5 1.3E+02 0.0045 26.6 7.2 90 329-418 23-115 (144)
36 4db6_A Armadillo repeat protei 30.5 2.4E+02 0.0082 24.4 9.1 29 227-255 12-40 (210)
37 3m1i_C Exportin-1; heat repeat 30.1 6.4E+02 0.022 28.4 15.5 33 385-417 338-370 (1049)
38 3gs3_A Symplekin, LD45768P; he 29.1 3.6E+02 0.012 26.1 10.7 125 332-478 36-168 (257)
39 1b3u_A Protein (protein phosph 28.5 4.6E+02 0.016 26.3 13.8 69 391-465 164-233 (588)
40 3m1i_C Exportin-1; heat repeat 28.2 4.5E+02 0.015 29.7 12.9 107 303-414 83-218 (1049)
41 4b8b_A General negative regula 26.7 2.1E+02 0.0073 31.4 9.3 52 228-299 468-522 (603)
42 1vdy_A Hypothetical protein (R 26.1 83 0.0028 28.1 5.1 94 369-466 31-132 (140)
43 3ibv_A Exportin-T; karyopherin 24.1 89 0.003 35.9 6.1 82 229-320 704-786 (980)
44 1oks_A RNA polymerase alpha su 23.5 38 0.0013 25.8 1.9 45 291-337 5-49 (56)
45 4flb_A Regulation of nuclear P 22.7 1.7E+02 0.0058 24.9 6.3 80 335-417 26-112 (132)
46 2vgl_A Adaptor protein complex 20.4 5.6E+02 0.019 27.4 11.3 84 328-416 492-585 (621)
No 1
>3fga_B Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; PP2A, shugoshin, nucleus, phosphoprotein, hydrolase, iron, M metal-binding, methylation, protein phosphatase, cell cycle division; HET: 1ZN; 2.70A {Homo sapiens} PDB: 2iae_B* 2nym_B* 2nyl_B*
Probab=100.00 E-value=4.2e-145 Score=1135.76 Aligned_cols=401 Identities=56% Similarity=1.019 Sum_probs=395.0
Q ss_pred ChhHhHHHHHHHHhcccccccc-cCCCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhHhhcccCCCCCCCC
Q 010510 98 ASFEKQNLLIRKLNLCCVLFDF-TDPTKNLKEKDVKRQTLLELVDFITSANGKFTETVMQEVIKMVSVNLFRSLSPQPRE 176 (508)
Q Consensus 98 ~~~e~~~Lf~~Kl~~C~~ifDF-sdp~~d~~~Ke~Kr~tL~EL~~~v~~~~~~l~e~~~~~i~~Mvs~NiFR~lPp~~~~ 176 (508)
|++||++||++||++||++||| +||.+|+++|++||+||+||+|||+++++++||++|+++++||++||||++||++++
T Consensus 1 ~~~e~~~lf~~Kl~~C~~ifDF~~d~~~d~~~Ke~Kr~~L~el~~~~~~~~~~lte~~~~~~~~Mi~~NiFR~lPp~~~~ 80 (403)
T 3fga_B 1 PPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNMFRTLPPSSNP 80 (403)
T ss_dssp CCSHHHHHHHHHHHHTTCCCCSSSSTTTTHHHHHHHHHHHHHHHHHHHHSCSCCCTTHHHHHHHHHHHHHCCCCCCCSSC
T ss_pred ChhHHHHHHHHHHHHhCCccCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 6789999999999999999999 899999999999999999999999999999999999999999999999999998876
Q ss_pred CccccCCCCCCCCCCCCCCCchhhHHHHHHHHHhcCCcCChHHhhccCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhc
Q 010510 177 NKTLESFDLEEEEPLMDPAWPHLQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYG 256 (508)
Q Consensus 177 ~~~~~~~d~eedep~~epaWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fv~~Ll~lfdSeDpRERd~LKtiLHriYg 256 (508)
++ .+||+|||||++||+|||||+||++|+||++|+++++++||+|||++||++|+++||||||||||+|||+||||||
T Consensus 81 ~~--~~~d~eedep~~e~sWpHLqlVYe~llrfi~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDprER~~LktiLhrIY~ 158 (403)
T 3fga_B 81 TG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDFLKTTLHRIYG 158 (403)
T ss_dssp CS--TTCCGGGCCCCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred cc--ccCCccccccccccCcHHHHHHHHHHHHHHhccccChhhHHhhcCHHHHHHHHHHcCCCChHHHHHHHHHHHHHHH
Confidence 43 3799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCcHHHHHHHHHHHhhcCCCCCCccccchhHHHHH
Q 010510 257 KFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIPLHKPKCLAMYHQPLSYCI 336 (508)
Q Consensus 257 Kf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFa~PLKeEHk~Fl~rvLiPLHk~~~~~~yh~qL~yci 336 (508)
||+++|+|||++|||+||+||||+++||||||||||+||||||||+|||+||++||.||||||||+++++.||+||+|||
T Consensus 159 kf~~~R~~Irk~innif~~fiye~e~~~GIaeLLeilgsIinGfa~PLkeehk~fl~~vLlPLHk~~~~~~y~~qL~ycv 238 (403)
T 3fga_B 159 KFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLSVYHPQLAYCV 238 (403)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHCCSSCCHHHHHHHHHTTTGGGGSTTGGGTHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHhcCcccCCCHHHHHHHHHHHHcccCCCchHHHHHHHHHHHHHHHcCCcchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCcccHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHhhhc
Q 010510 337 TQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWN 416 (508)
Q Consensus 337 ~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~~eF~~i~~pLF~~la~Ci~S~hfqVAErAL~lWn 416 (508)
+||++|||+|+++|++|||||||+|||+||||||+||++||+.++|++|+++++|||++||+|++|+|||||||||++||
T Consensus 239 ~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~Ele~iLe~~~~~~f~~i~~~lf~~la~ci~S~hfqVAErAL~~wn 318 (403)
T 3fga_B 239 VQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQVAERALYYWN 318 (403)
T ss_dssp HHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHGGGG
T ss_pred HHHHHhCchhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHhhccccccccccHHHHhhhcccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010510 417 NDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQKFKESEAKVEEIRTQCDASWK 496 (508)
Q Consensus 417 Ne~i~~li~~n~~~IlPii~paL~~~s~~HWn~~V~~la~~vlk~l~e~D~~lf~~~~~~~~~~~~~~~~~~~~r~~~W~ 496 (508)
|++|+++|++|+++|+|+|+|+|++++++|||++|+++|++|+|+||||||++|++|+++|+++++++++++++|+++|+
T Consensus 319 Ne~i~~li~~n~~~IlPii~p~L~~~~~~HWn~~v~~l~~~vlk~l~e~d~~lF~~~~~~~~~~~~~~~~~~~~r~~~W~ 398 (403)
T 3fga_B 319 NEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKLKMKEREEAWV 398 (403)
T ss_dssp CHHHHHHHHTTHHHHHHHHHHHHHHTTSCCSCHHHHHHHHHHHHHHHTTSCCCCCTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHhHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 010510 497 RLEE 500 (508)
Q Consensus 497 ~l~~ 500 (508)
+||+
T Consensus 399 ~~~~ 402 (403)
T 3fga_B 399 KIEN 402 (403)
T ss_dssp TCSC
T ss_pred HHhc
Confidence 9874
No 2
>2npp_B PP2A, B subunit, serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; heat repeat, signaling protein, hydrolase-hydrolase inhibito; HET: 1ZN; 3.30A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=5.5e-146 Score=1157.01 Aligned_cols=417 Identities=56% Similarity=0.996 Sum_probs=382.3
Q ss_pred cccCCCCCCCChhHhHHHHHHHHhcccccccc-cCCCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhHhhc
Q 010510 88 YEALPGFRDVASFEKQNLLIRKLNLCCVLFDF-TDPTKNLKEKDVKRQTLLELVDFITSANGKFTETVMQEVIKMVSVNL 166 (508)
Q Consensus 88 ~~~LP~~~dv~~~e~~~Lf~~Kl~~C~~ifDF-sdp~~d~~~Ke~Kr~tL~EL~~~v~~~~~~l~e~~~~~i~~Mvs~Ni 166 (508)
+++||+|+|||++|+++||++||++||++||| +||.+|+++||+||+||+||+||++++++++||++|+++++||++||
T Consensus 24 ~~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~Ni 103 (449)
T 2npp_B 24 PVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNM 103 (449)
T ss_dssp --------------CCCCTTTHHHHHHHHHHHCCCCSSSCCCCCSHHHHHHHHHHHHHSSCCSCCCSSCCHHHHHHHHHH
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCchhhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Confidence 45999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCccccCCCCCCCCCCCCCCCchhhHHHHHHHHHhcCCcCChHHhhccCCHHHHHHHhhcCCCCChhHHHH
Q 010510 167 FRSLSPQPRENKTLESFDLEEEEPLMDPAWPHLQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLLDLFDSEDPREREY 246 (508)
Q Consensus 167 FR~lPp~~~~~~~~~~~d~eedep~~epaWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fv~~Ll~lfdSeDpRERd~ 246 (508)
||++||.+++++ ..||+|||||++||+|||||+||++|+|||+|+++++++||+|||++||++|+++||||||||||+
T Consensus 104 FR~lPp~~~~~~--~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~ 181 (449)
T 2npp_B 104 FRTLPPSSNPTG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDF 181 (449)
T ss_dssp CCCCCCCSSCCS--SSSCGGGCCCCCCTTHHHHHHHHHHHHHHHTSTTCCSTTGGGTSCHHHHHHHHHTTTSSTHHHHHH
T ss_pred CCCCCCCCCccc--ccCCCccccccccccchHHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHH
Confidence 999999876643 379999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCcHHHHHHHHHHHhhcCCCCCCcc
Q 010510 247 LKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIPLHKPKCLA 326 (508)
Q Consensus 247 LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFa~PLKeEHk~Fl~rvLiPLHk~~~~~ 326 (508)
||||||||||||+++|+|||++|||+||+||||+++||||+||||||||||||||+|||+||+.||.||||||||+++++
T Consensus 182 LktiLhrIY~Kf~~~R~~Irk~i~nif~~fi~e~e~~nGIaeLLeilgSIinGfa~PLKeehk~fl~~vLlPLhk~~~l~ 261 (449)
T 2npp_B 182 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLS 261 (449)
T ss_dssp HHHHHHHHHHSCTTTHHHHHHHHHHHHHHHHHTCSCCSCHHHHHHHHHHHHSSCCSSCCHHHHHHHHHTTGGGGGSSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHhCcccHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCChhHHHhhHHHHHHHHHHHhCCCcHH
Q 010510 327 MYHQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQ 406 (508)
Q Consensus 327 ~yh~qL~yci~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~~eF~~i~~pLF~~la~Ci~S~hfq 406 (508)
.||+||+||++||++|||+|+++|++|||||||+|||+||||||+|||+||+.++|++|+++++|||+|||+|++|+|||
T Consensus 262 ~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeile~~~~~ef~~i~~~lF~~la~ci~S~hfq 341 (449)
T 2npp_B 262 VYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQ 341 (449)
T ss_dssp GTHHHHHHHHHHHHHHCGGGHHHHHHHHHHTCCSSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHTCSCHH
T ss_pred HhHHHHHHHHHHHHhcCcHhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcchhHHHHHhhccccccccccHHHHhhhcccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHH
Q 010510 407 VAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQKFKESEAKVEE 486 (508)
Q Consensus 407 VAErAL~lWnNe~i~~li~~n~~~IlPii~paL~~~s~~HWn~~V~~la~~vlk~l~e~D~~lf~~~~~~~~~~~~~~~~ 486 (508)
||||||++|||++|+++|++|+++|+|+|+|+|++++++|||++||++|++|+++||||||++|++|+++|+++++++++
T Consensus 342 VAErAL~~w~N~~i~~li~~n~~~IlPii~p~L~~~s~~HWn~~V~~la~~vlk~l~e~d~~lf~~c~~~~~~~~~~~~~ 421 (449)
T 2npp_B 342 VAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKTHWNKTIHGLIYNALKLFMEMNQKLFDDCTQQFKAEKLKEKL 421 (449)
T ss_dssp HHHHHHGGGGCHHHHHHHHTTHHHHHHHHHHHHTSCTTCCSSTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHhchhhhHHhhHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q 010510 487 IRTQCDASWKRLEEIAAANS 506 (508)
Q Consensus 487 ~~~~r~~~W~~l~~~A~~~~ 506 (508)
.+++|+++|++|+++|++++
T Consensus 422 ~~~~r~~~W~~i~~~A~~~~ 441 (449)
T 2npp_B 422 KMKEREEAWVKIENLAKANP 441 (449)
T ss_dssp TSCC----------------
T ss_pred HHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999998865
No 3
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A {Homo sapiens} SCOP: a.118.1.20
Probab=100.00 E-value=1.9e-130 Score=1022.20 Aligned_cols=356 Identities=60% Similarity=1.044 Sum_probs=325.2
Q ss_pred cccCCCCCCCChhHhHHHHHHHHhcccccccc-cCCCCCchhhHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHhHhhc
Q 010510 88 YEALPGFRDVASFEKQNLLIRKLNLCCVLFDF-TDPTKNLKEKDVKRQTLLELVDFITSANGKFTETVMQEVIKMVSVNL 166 (508)
Q Consensus 88 ~~~LP~~~dv~~~e~~~Lf~~Kl~~C~~ifDF-sdp~~d~~~Ke~Kr~tL~EL~~~v~~~~~~l~e~~~~~i~~Mvs~Ni 166 (508)
+++||+|+|+|++|+++||++||++||++||| +||.+|+++||+||+||+||++|++++++++||++++++++||++||
T Consensus 36 ~~~lp~l~d~~~~e~~~lf~~Kl~~C~~ifDF~~dp~~d~~~Ke~Kr~~L~el~~~v~~~~~~lte~i~~~i~~Mi~~Ni 115 (392)
T 2jak_A 36 PVVLLHIRDVPPADQEKLFIQKLRQCCVLFDFVSDPLSDLKWKEVKRAALSEMVEYITHNRNVITEPIYPEVVHMFAVNM 115 (392)
T ss_dssp ------CCCCC-CSCSHHHHHHHHHTTCCCCCSSCSSSSHHHHHHHHHHHHHHHHHHTTCCSCCCTTHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHHhCCeeCCCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHh
Confidence 45999999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCccccCCCCCCCCCCCCCCCchhhHHHHHHHHHhcCCcCChHHhhccCCHHHHHHHhhcCCCCChhHHHH
Q 010510 167 FRSLSPQPRENKTLESFDLEEEEPLMDPAWPHLQIVYEFFLRFVASPETDAKLAKRYIDHSFVLKLLDLFDSEDPREREY 246 (508)
Q Consensus 167 FR~lPp~~~~~~~~~~~d~eedep~~epaWpHLqlVYeillrfv~s~~~d~k~ak~~id~~Fv~~Ll~lfdSeDpRERd~ 246 (508)
||++||.+++++ .+||+|||||++||+|||||+||++|+||++|+++++++||+|||++||.+|+++||||||||||+
T Consensus 116 FR~lPp~~~~~~--~~~d~eedep~~e~sWpHLqlVYe~llrfv~s~~f~~~~~k~~id~~Fi~~Ll~lfdSeDpRERd~ 193 (392)
T 2jak_A 116 FRTLPPSSNPTG--AEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQLLELFDSEDPRERDF 193 (392)
T ss_dssp CSCCCC-----------------CCCCTTHHHHHHHHHHHHHHHHCTTCCHHHHTTTSCHHHHHHHHHHTTCSCHHHHHH
T ss_pred CCCCCCCCCccc--ccCCccccccccccCChhHHHHHHHHHHHHHccCCChhhhhhhCCHHHHHHHHHHcCCCChHHHHH
Confidence 999999876543 379999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccccCChHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCcHHHHHHHHHHHhhcCCCCCCcc
Q 010510 247 LKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEHKLFLIRALIPLHKPKCLA 326 (508)
Q Consensus 247 LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFa~PLKeEHk~Fl~rvLiPLHk~~~~~ 326 (508)
|||+||||||||+++|+|||++|||+||+||||+++||||||||||+||||||||+|||+||++||.||||||||+++++
T Consensus 194 LktiLhrIY~Kf~~~R~~Irk~i~nif~~fiye~e~~~GIaeLLeilgsIIngfa~PLKeehk~Fl~~vLlPLhk~~~l~ 273 (392)
T 2jak_A 194 LKTTLHRIYGKFLGLRAYIRKQINNIFYRFIYETEHHNGIAELLEILGSIINGFALPLKEEHKIFLLKVLLPLHKVKSLS 273 (392)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHTSSCCCSCHHHHHHHHHHHHHTCCSSCCHHHHHHHHHTTGGGGTSGGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHhHhhccCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHhCcccHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCChhHHHhhHHHHHHHHHHHhCCCcHH
Q 010510 327 MYHQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQ 406 (508)
Q Consensus 327 ~yh~qL~yci~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~~eF~~i~~pLF~~la~Ci~S~hfq 406 (508)
.||+||+||++||++|||+|+++|++|||||||+|||+||||||+|||+||+.+++++|+++++|||+|||+|++|+|||
T Consensus 274 ~y~~qL~ycv~qf~eKDp~L~~~vi~~LLk~WP~tns~KevlFL~eleeiLe~~~~~~f~~i~~~lF~~la~ci~S~hfq 353 (392)
T 2jak_A 274 VYHPQLAYCVVQFLEKDSTLTEPVVMALLKYWPKTHSPKEVMFLNELEEILDVIEPSEFVKIMEPLFRQLAKCVSSPHFQ 353 (392)
T ss_dssp GTHHHHHHHHHHHHHHCGGGHHHHHHHHHHSSCSSCCTTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTCSSHH
T ss_pred HhHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcchhHHHHHhhccccccccccHHHHhhhcc
Q 010510 407 VAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCN 445 (508)
Q Consensus 407 VAErAL~lWnNe~i~~li~~n~~~IlPii~paL~~~s~~ 445 (508)
||||||++|||++|+++|++|+++|+|+|||+|++|+++
T Consensus 354 VAErAL~~wnNe~i~~li~~n~~~ilPii~~~L~~~s~~ 392 (392)
T 2jak_A 354 VAERALYYWNNEYIMSLISDNAAKILPIMFPSLYRNSKT 392 (392)
T ss_dssp HHHHHHGGGGCHHHHHHHHHTHHHHTTTSCC--------
T ss_pred HHHHHHHHhCcHHHHHHHHhhhccchhhhhHHHHHHhcC
Confidence 999999999999999999999999999999999999864
No 4
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=93.68 E-value=1.8 Score=43.01 Aligned_cols=155 Identities=8% Similarity=0.036 Sum_probs=93.2
Q ss_pred cHHHHHHHHHHHhhcCCCCCCccccchhHHHHHHHHHHhC------cccHHHHHHHhhccCCCC--CChHHHHHHHHHHH
Q 010510 304 LKEEHKLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKD------CKLADTVIKGLLKYWPIT--NSSKEVMFLSELEE 375 (508)
Q Consensus 304 LKeEHk~Fl~rvLiPLHk~~~~~~yh~qL~yci~qFveKD------p~La~~vi~gLLk~WP~t--ns~KEv~FL~Elee 375 (508)
+.++.+..+...|+++.....-.. .+++.|+......| |.+...++..+- -. +...-..-+.-+..
T Consensus 83 l~~~~~~~ik~~ll~~l~~~~~~v--~~~~~~i~~ia~~~~~~~~w~~ll~~L~~~l~----~~~~~~~~r~~al~~l~~ 156 (462)
T 1ibr_B 83 IDANARREVKNYVLQTLGTETYRP--SSASQCVAGIACAEIPVNQWPELIPQLVANVT----NPNSTEHMKESTLEAIGY 156 (462)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCSSS--CSHHHHHHHHHHHHGGGTCCTTHHHHHHHHHH----CTTCCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCchh--hHHHHHHHHHHHHhccccccHHHHHHHHHHhc----cCCCCHHHHHHHHHHHHH
Confidence 667788888888888877665555 77999999887654 233333333331 12 22222334556677
Q ss_pred HHhhCChhHHHhhHHHHHHHHHHHhCCC--cHHHHHHHHhhhcc--hhHHHHHhhccccccccccHHHHhhhcccchHHH
Q 010510 376 VLEATQPPEFQKCMVPLFRQIASCLSSS--HFQVAERALYLWNN--DHIENLIRQNRKVILPIIFPALEKNGCNHWNQVV 451 (508)
Q Consensus 376 iLe~~~~~eF~~i~~pLF~~la~Ci~S~--hfqVAErAL~lWnN--e~i~~li~~n~~~IlPii~paL~~~s~~HWn~~V 451 (508)
+.+...++.+......++..+..|+.++ +..|-..|+....+ +.+...+.. ....+.+++.|.+.. .+=+..|
T Consensus 157 l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~--~~~~~~l~~~l~~~~-~~~~~~v 233 (462)
T 1ibr_B 157 ICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDK--ESERHFIMQVVCEAT-QCPDTRV 233 (462)
T ss_dssp HHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTS--HHHHHHHHHHHHHHT-TCSSHHH
T ss_pred HHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHhc-CCCCHHH
Confidence 7776666667777888999999999998 77777777655433 111111110 001122344444433 2335678
Q ss_pred HHHHHHHHHHHHhhCH
Q 010510 452 QNLTVNVRKIFSEIDP 467 (508)
Q Consensus 452 ~~la~~vlk~l~e~D~ 467 (508)
|..++.++..+.+..+
T Consensus 234 r~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 234 RVAALQNLVKIMSLYY 249 (462)
T ss_dssp HHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888877776554
No 5
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=92.16 E-value=15 Score=39.76 Aligned_cols=231 Identities=10% Similarity=0.084 Sum_probs=114.8
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHhccccC-ChHHHH-HHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccC----
Q 010510 228 FVLKLLDLFDSEDPREREYLKTILHRIYGKFMV-HRPFIR-KAINNIFFRFIFETEKHNGIAELLEVLGSIINGFA---- 301 (508)
Q Consensus 228 Fv~~Ll~lfdSeDpRERd~LKtiLHriYgKf~~-~R~fIR-k~Innif~~fiyEte~~nGIaELLeIlgSIInGFa---- 301 (508)
++.-+.++..++|++-|...-..|.++...+.. .++++. ..+. .+...+- .....-....++++..+.....
T Consensus 218 il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~-~~~~~~~-~~~~~v~~~al~~l~~l~~~~~~~~~ 295 (876)
T 1qgr_A 218 IMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFA-ITIEAMK-SDIDEVALQGIEFWSNVCDEEMDLAI 295 (876)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHH-HHHHHHT-CSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHhc-CCchHHHHHHHHHHHHHHHHHHhHhh
Confidence 344566677888888887777776666654332 355665 3332 2222221 1111113345666666553210
Q ss_pred ----------CC---c---HHHHHHHHHHHhhcCCCCC------CccccchhHHHHHHHHHHhCc-ccHHHHHHHhhccC
Q 010510 302 ----------LP---L---KEEHKLFLIRALIPLHKPK------CLAMYHQPLSYCITQFVEKDC-KLADTVIKGLLKYW 358 (508)
Q Consensus 302 ----------~P---L---KeEHk~Fl~rvLiPLHk~~------~~~~yh~qL~yci~qFveKDp-~La~~vi~gLLk~W 358 (508)
.| . -..|..-+...++.+-... .-......-..|+....+..+ .+...++..+...-
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~~l~~l~~~l 375 (876)
T 1qgr_A 296 EASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVPHVLPFIKEHI 375 (876)
T ss_dssp HHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHT
T ss_pred hhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHhhHHHHHHHHHHHc
Confidence 01 1 0111111222233322110 000111122233333333222 23444554444333
Q ss_pred CCCCChHHHHHHHHHHHHHhhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHhhc--ccccccccc
Q 010510 359 PITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQN--RKVILPIIF 436 (508)
Q Consensus 359 P~tns~KEv~FL~EleeiLe~~~~~eF~~i~~pLF~~la~Ci~S~hfqVAErAL~lWnNe~i~~li~~n--~~~IlPii~ 436 (508)
--.+...-..-+.-+..+.+.+.++.+......++..+-.+++++|..|-++|+..+. .+...+... ....++-++
T Consensus 376 ~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~--~~~~~~~~~~~~~~~l~~~l 453 (876)
T 1qgr_A 376 KNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVG--RICELLPEAAINDVYLAPLL 453 (876)
T ss_dssp TCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHH--HHHHHCGGGTSSTTTHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--HHHHhCchhcccHHHHHHHH
Confidence 2223222223334455555666666677777778888889999999999988876654 233333221 234566677
Q ss_pred HHHHhhhcccchHHHHHHHHHHHHHHHh
Q 010510 437 PALEKNGCNHWNQVVQNLTVNVRKIFSE 464 (508)
Q Consensus 437 paL~~~s~~HWn~~V~~la~~vlk~l~e 464 (508)
|.|.+....+ ..|+..+..++..+.+
T Consensus 454 ~~l~~~l~~~--~~v~~~a~~al~~l~~ 479 (876)
T 1qgr_A 454 QCLIEGLSAE--PRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHTTSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCC--HHHHHHHHHHHHHHHH
Confidence 7777766554 6677777666665554
No 6
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=89.50 E-value=26 Score=37.84 Aligned_cols=263 Identities=12% Similarity=0.124 Sum_probs=131.2
Q ss_pred chhhHHHHHHHHHhcCCcCChHHh-------hc---cCCH--------H-HHHHHhhcCCCCChhHHHHHHHHHHHHhcc
Q 010510 197 PHLQIVYEFFLRFVASPETDAKLA-------KR---YIDH--------S-FVLKLLDLFDSEDPREREYLKTILHRIYGK 257 (508)
Q Consensus 197 pHLqlVYeillrfv~s~~~d~k~a-------k~---~id~--------~-Fv~~Ll~lfdSeDpRERd~LKtiLHriYgK 257 (508)
+|..-+...|...+.+++.++.+. .. +++. . ++.-|...+.++|++.|...-.+|.++...
T Consensus 175 ~~~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~ 254 (861)
T 2bpt_A 175 SSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSK 254 (861)
T ss_dssp GGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 467777777777776653232211 11 2221 2 344456677889999998877777777655
Q ss_pred ccC-ChHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccC-----------CC-----cHHHHHHHHHHHhhcCC
Q 010510 258 FMV-HRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFA-----------LP-----LKEEHKLFLIRALIPLH 320 (508)
Q Consensus 258 f~~-~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFa-----------~P-----LKeEHk~Fl~rvLiPLH 320 (508)
+.. .++++.+.+-..+...+.. ....-....++++++++.... .| .-..+...+..+|+...
T Consensus 255 ~~~~~~~~l~~~l~~~~~~~~~~-~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l 333 (861)
T 2bpt_A 255 YYTFMKPYMEQALYALTIATMKS-PNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLL 333 (861)
T ss_dssp HGGGCHHHHHHTHHHHHHHHTTC-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHH
Confidence 432 3456653333344333322 111223456777777764310 00 00112222333444333
Q ss_pred CCCCc----ccc--chhHHHHHHHHHHhCc-ccHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCChhHHHhhHHHHH
Q 010510 321 KPKCL----AMY--HQPLSYCITQFVEKDC-KLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLF 393 (508)
Q Consensus 321 k~~~~----~~y--h~qL~yci~qFveKDp-~La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~~eF~~i~~pLF 393 (508)
+...- ..| ...-..|+..+...-+ .+...++..+...---.+...-..-+.-+..+.+.+.++.+...+..+.
T Consensus 334 ~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~~il 413 (861)
T 2bpt_A 334 TRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQAL 413 (861)
T ss_dssp TCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHHHHHH
T ss_pred HhcccccccccCcHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 32100 001 1112233333322211 2333444433322111221211222334555556666677777788888
Q ss_pred HHHHHHhCCCcHHHHHHHHhhhcchhHHHHHhhc--cccccccccHHHHhhhcccchHHHHHHHHHHHHHHHh
Q 010510 394 RQIASCLSSSHFQVAERALYLWNNDHIENLIRQN--RKVILPIIFPALEKNGCNHWNQVVQNLTVNVRKIFSE 464 (508)
Q Consensus 394 ~~la~Ci~S~hfqVAErAL~lWnNe~i~~li~~n--~~~IlPii~paL~~~s~~HWn~~V~~la~~vlk~l~e 464 (508)
..+..++.++|..|-++|+..+ ..+...+... ....++-++|.|.+....+ ..|+..++.++..+.+
T Consensus 414 ~~l~~~l~d~~~~vr~~a~~~l--~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~--~~v~~~a~~al~~l~~ 482 (861)
T 2bpt_A 414 PSILNLMNDQSLQVKETTAWCI--GRIADSVAESIDPQQHLPGVVQACLIGLQDH--PKVATNCSWTIINLVE 482 (861)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHH--HHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHHHH--HHHHHHhhhhcCCHHHHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHH
Confidence 9999999999999998886533 2333333322 2344556667666655554 5677777766654443
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=89.22 E-value=12 Score=40.49 Aligned_cols=92 Identities=14% Similarity=0.106 Sum_probs=51.1
Q ss_pred HHHHHHHHHhhCChhHHHhhHHHHHHHHHHHhCCCcH-HHHHHHHhhhcchhHHHHHhhccccccccccHHHHhhhcccc
Q 010510 369 FLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHF-QVAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCNHW 447 (508)
Q Consensus 369 FL~EleeiLe~~~~~eF~~i~~pLF~~la~Ci~S~hf-qVAErAL~lWnNe~i~~li~~n~~~IlPii~paL~~~s~~HW 447 (508)
.+.=|..++..+.. ++......++..+...+++.+. .|-+.|+..+. .+.......-...+|-++|.|.+... +=
T Consensus 576 ~~~~l~~l~~~~~~-~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~--~l~~~~~~~~~~~l~~i~~~l~~~l~-~~ 651 (861)
T 2bpt_A 576 ILTVLAAVIRKSPS-SVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAIS--ALAASLGKGFEKYLETFSPYLLKALN-QV 651 (861)
T ss_dssp HHHHHHHHHHHCGG-GTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHH--HHHHHHGGGGHHHHHHHHHHHHHHHH-CT
T ss_pred HHHHHHHHHHHhhh-hhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHHhc-cc
Confidence 44555555655544 5666677788888888877766 67777776653 23333332222233445555554432 22
Q ss_pred hHHHHHHHHHHHHHHHh
Q 010510 448 NQVVQNLTVNVRKIFSE 464 (508)
Q Consensus 448 n~~V~~la~~vlk~l~e 464 (508)
+..++..+..++..+.+
T Consensus 652 ~~~vr~~a~~~l~~l~~ 668 (861)
T 2bpt_A 652 DSPVSITAVGFIADISN 668 (861)
T ss_dssp TSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHH
Confidence 33466666666654443
No 8
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=86.65 E-value=12 Score=34.49 Aligned_cols=177 Identities=14% Similarity=0.072 Sum_probs=110.0
Q ss_pred HhhcCCCCChhHHHHHHHHHHHHhc---cccCChHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCcHHHH
Q 010510 232 LLDLFDSEDPREREYLKTILHRIYG---KFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEH 308 (508)
Q Consensus 232 Ll~lfdSeDpRERd~LKtiLHriYg---Kf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFa~PLKeEH 308 (508)
+++.++|.|.+||..--.-|..+-. ++.. ....+. -+.+...+-.....+-....+..+|.+.+++...+...+
T Consensus 20 l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~--~~~~~i-~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 20 FYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN--GEYGAL-VSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC--CCCHHH-HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHhhhccCCHHHHHHHHHHHHHHHccCCCCCC--CCHHHH-HHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 5566789999999876666666543 2221 112222 233333331122222235678888888887765555544
Q ss_pred HHHHHHHhhcCCCCCCccccchhHHHHHHHHHHhCcccHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCChh-HHHh
Q 010510 309 KLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPP-EFQK 387 (508)
Q Consensus 309 k~Fl~rvLiPLHk~~~~~~yh~qL~yci~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~~-eF~~ 387 (508)
..+ ...|+...+.+.- .-.+....++..+++.-+ ...++..++...--.|++=...-+.-|..++....|+ .+..
T Consensus 97 ~~i-lp~ll~~l~d~~~-~vr~~a~~aL~~~~~~~~--~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~ 172 (242)
T 2qk2_A 97 SAC-VPSLLEKFKEKKP-NVVTALREAIDAIYASTS--LEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKK 172 (242)
T ss_dssp HHH-HHHHHHGGGCCCH-HHHHHHHHHHHHHHTTSC--HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHH
T ss_pred HHH-HHHHHHHHcCCCH-HHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHH
Confidence 444 5566666555442 233456777777776533 3566666666665556655556677888888877665 3566
Q ss_pred hHHHHHHHHHHHhCCCcHHHHHHHHhhh
Q 010510 388 CMVPLFRQIASCLSSSHFQVAERALYLW 415 (508)
Q Consensus 388 i~~pLF~~la~Ci~S~hfqVAErAL~lW 415 (508)
.+..+...|..|++.++..|=+.|....
T Consensus 173 ~l~~l~p~l~~~l~D~~~~VR~~A~~~l 200 (242)
T 2qk2_A 173 LLKLLTTSLVKTLNEPDPTVRDSSAEAL 200 (242)
T ss_dssp HHHHHHHHHHHHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 6778888899999999998888876543
No 9
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=86.32 E-value=16 Score=40.78 Aligned_cols=204 Identities=10% Similarity=0.141 Sum_probs=107.4
Q ss_pred HHHhhcCCCCChhHHHHHHHHHHHH---hccccCChHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCcHH
Q 010510 230 LKLLDLFDSEDPREREYLKTILHRI---YGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKE 306 (508)
Q Consensus 230 ~~Ll~lfdSeDpRERd~LKtiLHri---YgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFa~PLKe 306 (508)
.++++.+. .|+..++.+-.+++++ ||.-+ .+|+-..+..++-.| .. .+++.+|.+++.++..|...
T Consensus 689 ~~~l~~~~-~~~~v~e~~~~~l~~~~~~~~~~~--~~~l~~~~~~l~~~~--~~---~~~~~~l~l~~~li~~f~~~--- 757 (963)
T 2x19_B 689 QKVLSKWL-NDAQVVEAVCAIFEKSVKTLLDDF--APMVPQLCEMLGRMY--ST---IPQASALDLTRQLVHIFAHE--- 757 (963)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHHHHHSSSTT--GGGHHHHHHHHHHHH--HH---SCCHHHHHHHHHHHHHHTTC---
T ss_pred HHHHHhcc-CchHHHHHHHHHHHHHHHhhcccc--cccHHHHHHHHHHHH--Hc---CCccHHHHHHHHHHHHhCCC---
Confidence 34555433 5667777777777774 44322 456555554333322 22 24678999999999855432
Q ss_pred HHHHHHHHHhhcCCCCCCccccchhHHHHHHHHHHhCcccHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCChhHH-
Q 010510 307 EHKLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEF- 385 (508)
Q Consensus 307 EHk~Fl~rvLiPLHk~~~~~~yh~qL~yci~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~~eF- 385 (508)
+.+. +.+..+-+.+..|+...+.+|+.-...+ -.-|+.-+..++..+...-+
T Consensus 758 -----------~~~~-~~~~~~l~~~~~~~l~~~~~~~~~~pd~---------------~~~~f~ll~~~~~~~~~~~~~ 810 (963)
T 2x19_B 758 -----------PAHF-PPIEALFLLVTSVTLTLFQQGPRDHPDI---------------VDSFMQLLAQALKRKPDLFLC 810 (963)
T ss_dssp -----------TTTC-HHHHHHHHHHHHHHHHHHHHCTTTCHHH---------------HHHHHHHHHHHHHHCGGGGGC
T ss_pred -----------cchH-HHHHHHHHHHHHHHHHHHhhCcccCchH---------------HHHHHHHHHHHHHhCcHHHcC
Confidence 0000 0111233345566655555443210111 12344455555554432222
Q ss_pred Hhh-HHHHHHHHHHHhCCCcHHHHHHHHhhhcc--------hhHHHHHhhccccccccccHHHH-hhhcccchHHHHHHH
Q 010510 386 QKC-MVPLFRQIASCLSSSHFQVAERALYLWNN--------DHIENLIRQNRKVILPIIFPALE-KNGCNHWNQVVQNLT 455 (508)
Q Consensus 386 ~~i-~~pLF~~la~Ci~S~hfqVAErAL~lWnN--------e~i~~li~~n~~~IlPii~paL~-~~s~~HWn~~V~~la 455 (508)
... ...++..+..++..+|.-|+..|+.+|.+ +.+..++...-..++..++..+. ...+..|+ ..
T Consensus 811 ~~~~~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-----~~ 885 (963)
T 2x19_B 811 ERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCGEVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMD-----CF 885 (963)
T ss_dssp TTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTTSSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHH-----HH
T ss_pred CcccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHH-----HH
Confidence 122 45688888899999999999999998854 44444444444444444444443 12244553 23
Q ss_pred HHHHHHHHhhCHHHHHHHHHH
Q 010510 456 VNVRKIFSEIDPELFDECLQK 476 (508)
Q Consensus 456 ~~vlk~l~e~D~~lf~~~~~~ 476 (508)
..++..+...++..+.+...+
T Consensus 886 ~~il~~l~~~~~~~~~~~l~~ 906 (963)
T 2x19_B 886 ADILFALNKHCFSLLSMWIKE 906 (963)
T ss_dssp HHHHHHHHHHSHHHHHHHHHH
T ss_pred HHHHHHHHHHChHHHHHHHHH
Confidence 334444555667666665543
No 10
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=86.18 E-value=34 Score=36.97 Aligned_cols=92 Identities=15% Similarity=0.042 Sum_probs=47.1
Q ss_pred HHHHHHHHhhCChhHHHhhHHHHHHHHHHHhCCCc--HHHHHHHHhhhcchhHHHHHhhccccccccccHHHHhhhcccc
Q 010510 370 LSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSH--FQVAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCNHW 447 (508)
Q Consensus 370 L~EleeiLe~~~~~eF~~i~~pLF~~la~Ci~S~h--fqVAErAL~lWnNe~i~~li~~n~~~IlPii~paL~~~s~~HW 447 (508)
+.=+..+...+..++|...+..++..+..++.+.+ -.|-+.|+..+.+ +.......-...++-++|.|......+=
T Consensus 585 ~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~--l~~~~~~~~~~~~~~~~~~l~~~l~~~~ 662 (876)
T 1qgr_A 585 CATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVST--LVEVLGGEFLKYMEAFKPFLGIGLKNYA 662 (876)
T ss_dssp HHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHH--HHHHHGGGGGGGHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHH--HHHHHHhhHHHHHHHHHHHHHHHHcCcc
Confidence 34455555556557788888888888888888764 2466667665432 1221222222222334444444433322
Q ss_pred hHHHHHHHHHHHHHHH
Q 010510 448 NQVVQNLTVNVRKIFS 463 (508)
Q Consensus 448 n~~V~~la~~vlk~l~ 463 (508)
+..||..+..++..+.
T Consensus 663 ~~~vr~~a~~~l~~l~ 678 (876)
T 1qgr_A 663 EYQVCLAAVGLVGDLC 678 (876)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 4557776666555443
No 11
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=85.24 E-value=17 Score=34.58 Aligned_cols=180 Identities=7% Similarity=0.067 Sum_probs=116.6
Q ss_pred hcCCCCChhHHHHHHHHHHH-Hh-c--cccCChHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccC-CCcHHHH
Q 010510 234 DLFDSEDPREREYLKTILHR-IY-G--KFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFA-LPLKEEH 308 (508)
Q Consensus 234 ~lfdSeDpRERd~LKtiLHr-iY-g--Kf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFa-~PLKeEH 308 (508)
+.+.|.|.+||..--.-|.. +- | +.+.+..-.. .+-+.+...+-...+..-...-+.++|.+.+|+. ..+...|
T Consensus 23 ~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~-~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y 101 (249)
T 2qk1_A 23 ERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYS-NLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDY 101 (249)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCH-HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHH-HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHH
Confidence 34478999999776666666 55 3 3431110000 1112222222112222224677899999999998 6665234
Q ss_pred HHHHHHHhhcCCCCCCccccchhHHHHHHHHHHhC-c----ccHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCCh-
Q 010510 309 KLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKD-C----KLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQP- 382 (508)
Q Consensus 309 k~Fl~rvLiPLHk~~~~~~yh~qL~yci~qFveKD-p----~La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~- 382 (508)
..-+.-.|+..++-+.-. =-....+|+..+++.= | .-.+.++.-|+..+-..|++=....+.-|..+++....
T Consensus 102 ~~~llp~ll~~l~dkk~~-V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~ 180 (249)
T 2qk1_A 102 VSLVFTPLLDRTKEKKPS-VIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDG 180 (249)
T ss_dssp HHHHHHHHHHGGGCCCHH-HHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCc
Confidence 444466777777776532 3356788999898753 2 11345777777777666666666788888999988764
Q ss_pred -hHHHhhH-HHHHHHHHHHhCCCcHHHHHHHHhhh
Q 010510 383 -PEFQKCM-VPLFRQIASCLSSSHFQVAERALYLW 415 (508)
Q Consensus 383 -~eF~~i~-~pLF~~la~Ci~S~hfqVAErAL~lW 415 (508)
..|.+.+ ..+...+.+|++-+.-.|=+.|....
T Consensus 181 ~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l 215 (249)
T 2qk1_A 181 YSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESF 215 (249)
T ss_dssp SHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 7888888 89999999999999999988887654
No 12
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=84.27 E-value=7.9 Score=42.72 Aligned_cols=224 Identities=12% Similarity=0.081 Sum_probs=123.7
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHhhhc--ccCCcChHH-HHHHHHHHHhccCCCcH
Q 010510 229 VLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFE--TEKHNGIAE-LLEVLGSIINGFALPLK 305 (508)
Q Consensus 229 v~~Ll~lfdSeDpRERd~LKtiLHriYgKf~~~R~fIRk~Innif~~fiyE--te~~nGIaE-LLeIlgSIInGFa~PLK 305 (508)
+.++|...-|+|+..|..-...|..++. ...|. ..+. +|.. +.....+-. ..-.|...|+..-.++.
T Consensus 15 l~~~l~~~~s~d~~~r~~Ae~~L~~~~~----~p~~~-----~~l~-~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~ 84 (852)
T 4fdd_A 15 ILQLLKESQSPDTTIQRTVQQKLEQLNQ----YPDFN-----NYLI-FVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFP 84 (852)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHTT----SHHHH-----HHHH-HHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCC
T ss_pred HHHHHHHHhCcCHHHHHHHHHHHHHHHh----CCCHH-----HHHH-HHHhccCCCChHHHHHHHHHHHHHHHHccCCCC
Confidence 5566666678999999998888877653 11111 1111 1221 111111100 01133344433334577
Q ss_pred HHHHHHHHHHhhcCCCCCCccccchhHHHHHHHHHHhC-----cccHHHHHHHhhccCCCCCC-hHHHHHHHHHHHHHhh
Q 010510 306 EEHKLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKD-----CKLADTVIKGLLKYWPITNS-SKEVMFLSELEEVLEA 379 (508)
Q Consensus 306 eEHk~Fl~rvLiPLHk~~~~~~yh~qL~yci~qFveKD-----p~La~~vi~gLLk~WP~tns-~KEv~FL~EleeiLe~ 379 (508)
++.+.+++..|+++-..+. ..-..+++.|+......| |.|...++..+- -.+. .+| .-+.-|..+++.
T Consensus 85 ~~~~~~ik~~ll~~l~~~~-~~vr~~~a~~i~~ia~~~~~~~wp~ll~~L~~~l~----~~~~~~r~-~al~~L~~i~~~ 158 (852)
T 4fdd_A 85 NGVTDFIKSECLNNIGDSS-PLIRATVGILITTIASKGELQNWPDLLPKLCSLLD----SEDYNTCE-GAFGALQKICED 158 (852)
T ss_dssp HHHHHHHHHHHHTTTTCSS-HHHHHHHHHHHHHHHHHTTTTTCTTHHHHHHHHHS----CSSHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHHhcCccccHHHHHHHHHHHc----CCCHHHHH-HHHHHHHHHHHH
Confidence 8999999999999876443 345678899999888776 333333333322 2222 222 223344445554
Q ss_pred CChhHHH-----hhHHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHhhccccccccccHHHHhhhcccchHHHHHH
Q 010510 380 TQPPEFQ-----KCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNL 454 (508)
Q Consensus 380 ~~~~eF~-----~i~~pLF~~la~Ci~S~hfqVAErAL~lWnNe~i~~li~~n~~~IlPii~paL~~~s~~HWn~~V~~l 454 (508)
..+ .+. .....++..+.+|+.+++..|-..|+....+ ++....+.-...++-+++.|.+..... +..||..
T Consensus 159 ~~~-~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~--~~~~~~~~~~~~~~~~l~~l~~~~~d~-~~~vr~~ 234 (852)
T 4fdd_A 159 SAE-ILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQ--FIISRTQALMLHIDSFIENLFALAGDE-EPEVRKN 234 (852)
T ss_dssp HTT-HHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHT--TTTTTCHHHHTSHHHHHHHHHHHHTCC-CHHHHHH
T ss_pred hHH-HhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHH--HHhcccHHHHHHHHHHHHHHHHHcCCC-CHHHHHH
Confidence 432 222 1244566667778899999988777765532 111100111122334556666544332 5689999
Q ss_pred HHHHHHHHHhhCHHHHHH
Q 010510 455 TVNVRKIFSEIDPELFDE 472 (508)
Q Consensus 455 a~~vlk~l~e~D~~lf~~ 472 (508)
++.++..+.+..|+.+..
T Consensus 235 a~~~L~~l~~~~~~~~~~ 252 (852)
T 4fdd_A 235 VCRALVMLLEVRMDRLLP 252 (852)
T ss_dssp HHHHHHHHHHHCHHHHGG
T ss_pred HHHHHHHHHHhCHHHHHH
Confidence 999999998888766543
No 13
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=79.19 E-value=34 Score=33.71 Aligned_cols=144 Identities=18% Similarity=0.207 Sum_probs=88.1
Q ss_pred cCCCcHHHHHHHHHHHhhcCCCCCCccccchhHHHHHHHHHHhCcccHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhh
Q 010510 300 FALPLKEEHKLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEA 379 (508)
Q Consensus 300 Fa~PLKeEHk~Fl~rvLiPLHk~~~~~~yh~qL~yci~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~ 379 (508)
|..| .+|+...|...+.|.-.+ +...+...+|.+--...+..|. +.++.
T Consensus 28 f~~p-~~e~v~~L~~~~~~~~~~-----------~~~~~lfs~d~k~~~~ale~L~-------------------~~l~~ 76 (266)
T 2of3_A 28 FQAP-TDEHISQLQTLLGNQAKV-----------SLMSQLFHKDFKQHLAALDSLV-------------------RLADT 76 (266)
T ss_dssp CSSC-CHHHHHHHHHHHHTTBCH-----------HHHHHHTCSCHHHHHHHHHHHH-------------------HHHHH
T ss_pred CCCC-CHHHHHHHHHHHHHhccH-----------HHHHHhcCCCHHHHHHHHHHHH-------------------HHhhh
Confidence 3344 455555556555544222 3445566666544444443333 33433
Q ss_pred CChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHhhcc-cc---ccccccHHHHhhhcccchHHHHHHH
Q 010510 380 TQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNR-KV---ILPIIFPALEKNGCNHWNQVVQNLT 455 (508)
Q Consensus 380 ~~~~eF~~i~~pLF~~la~Ci~S~hfqVAErAL~lWnNe~i~~li~~n~-~~---IlPii~paL~~~s~~HWn~~V~~la 455 (508)
.+++...+..-+|+-++-=+.+.|++|+.++|.+.. +++..+.+.. +. -...++|.|..-. +|=++.||+.+
T Consensus 77 -~~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~--~l~~~l~~~~y~~~~~ea~~~lP~LveKl-Gd~k~~vR~~~ 152 (266)
T 2of3_A 77 -SPRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCK--VIVELIRDTETPMSQEEVSAFVPYLLLKT-GEAKDNMRTSV 152 (266)
T ss_dssp -CHHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHH--HHHHHHHHTTCCCCHHHHHHHHHHHHHGG-GCSSHHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHHh-CCChHHHHHHH
Confidence 345555556667887775556789999999998874 4444444421 11 1356677766543 67789999999
Q ss_pred HHHHHHHHhh-CHH-HHHHHHHHHH
Q 010510 456 VNVRKIFSEI-DPE-LFDECLQKFK 478 (508)
Q Consensus 456 ~~vlk~l~e~-D~~-lf~~~~~~~~ 478 (508)
..+++.++++ .|. +|+.+...++
T Consensus 153 r~il~~l~~v~~~~~v~~~l~~g~k 177 (266)
T 2of3_A 153 RDIVNVLSDVVGPLKMTPMLLDALK 177 (266)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHc
Confidence 9999999984 455 7777766554
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=76.89 E-value=45 Score=32.78 Aligned_cols=231 Identities=13% Similarity=0.101 Sum_probs=107.7
Q ss_pred hhccCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccccCChHHHH-HHHHHHHHHhhhcccCCcChHHHHHHHHHHHh
Q 010510 220 AKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIR-KAINNIFFRFIFETEKHNGIAELLEVLGSIIN 298 (508)
Q Consensus 220 ak~~id~~Fv~~Ll~lfdSeDpRERd~LKtiLHriYgKf~~~R~fIR-k~Innif~~fiyEte~~nGIaELLeIlgSIIn 298 (508)
.+..++...+-.|+.++.++|+.-|+..-..|..+-+.....|..+. ..+-..+.+++..+....-....+..|+.+..
T Consensus 100 ~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~ 179 (450)
T 2jdq_A 100 TRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179 (450)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhC
Confidence 34445556788899999999999999988888888765433343332 22234455555322222223445667777775
Q ss_pred ccCCCcHHHHHHHHHHHhhcCCCCCCccccchhHHHHHHHHHHhC---------cccHHHHHHHhhccCCCCCChHHHHH
Q 010510 299 GFALPLKEEHKLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKD---------CKLADTVIKGLLKYWPITNSSKEVMF 369 (508)
Q Consensus 299 GFa~PLKeEHk~Fl~rvLiPLHk~~~~~~yh~qL~yci~qFveKD---------p~La~~vi~gLLk~WP~tns~KEv~F 369 (508)
+-....+.....-....|+.+.+...-.. ......++......+ ..+...++..| + ..+..-...-
T Consensus 180 ~~~~~~~~~~~~~~l~~L~~~l~~~~~~v-~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll-~---~~~~~v~~~a 254 (450)
T 2jdq_A 180 GKSPPPEFAKVSPCLNVLSWLLFVSDTDV-LADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL-M---HNDYKVVSPA 254 (450)
T ss_dssp CSSSCCCGGGTGGGHHHHHHHTTCCCHHH-HHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHT-T---CSCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHccCCHHH-HHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHH-C---CCchhHHHHH
Confidence 53111111111111233333333221110 111222222222211 12333333322 2 1111111111
Q ss_pred HHHHHHHHhhCChhHHHhhH-HHHHHHHHHHhCCCcHHHHHHHHhhhcc------hhHHHHHhhccccccccccHHHHhh
Q 010510 370 LSELEEVLEATQPPEFQKCM-VPLFRQIASCLSSSHFQVAERALYLWNN------DHIENLIRQNRKVILPIIFPALEKN 442 (508)
Q Consensus 370 L~EleeiLe~~~~~eF~~i~-~pLF~~la~Ci~S~hfqVAErAL~lWnN------e~i~~li~~n~~~IlPii~paL~~~ 442 (508)
+.-|..+... .+..-+.+. ..+...|..++.+++..|-+.|+....| +....++. ..++|.++..|..
T Consensus 255 ~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~---~~~l~~L~~~l~~- 329 (450)
T 2jdq_A 255 LRAVGNIVTG-DDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID---ANIFPALISILQT- 329 (450)
T ss_dssp HHHHHHHTTS-CHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH---TTHHHHHHHHHHH-
T ss_pred HHHHHHHhhC-ChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH---CCCHHHHHHHHhc-
Confidence 1122222111 111111111 1366778888888888888888766533 22222222 2456666555542
Q ss_pred hcccchHHHHHHHHHHHHHHHh
Q 010510 443 GCNHWNQVVQNLTVNVRKIFSE 464 (508)
Q Consensus 443 s~~HWn~~V~~la~~vlk~l~e 464 (508)
=+..||..+..++.-+..
T Consensus 330 ----~~~~v~~~a~~~L~~l~~ 347 (450)
T 2jdq_A 330 ----AEFRTRKEAAWAITNATS 347 (450)
T ss_dssp ----SCHHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHHHHHHHc
Confidence 245677776666665544
No 15
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=74.20 E-value=1.1e+02 Score=33.61 Aligned_cols=242 Identities=10% Similarity=0.131 Sum_probs=127.9
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHh---ccccCChHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCC
Q 010510 226 HSFVLKLLDLFDSEDPREREYLKTILHRIY---GKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFAL 302 (508)
Q Consensus 226 ~~Fv~~Ll~lfdSeDpRERd~LKtiLHriY---gKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFa~ 302 (508)
...+..|+.+++..+.+....+-..+..|. |.-+....++...+.-++..+-.-.+....+..+++.+++|......
T Consensus 482 ~~ll~~L~~~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~ 561 (852)
T 4fdd_A 482 AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQS 561 (852)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhH
Confidence 345666777777666666544444444443 23333345666655444433222122233345678888888765433
Q ss_pred CcHHHHHHHHH---HHhhc-C-------CCCCCcc----ccch---hHHHHHHHHHHhCcc--c-HHHHHHHhhccCCCC
Q 010510 303 PLKEEHKLFLI---RALIP-L-------HKPKCLA----MYHQ---PLSYCITQFVEKDCK--L-ADTVIKGLLKYWPIT 361 (508)
Q Consensus 303 PLKeEHk~Fl~---rvLiP-L-------Hk~~~~~----~yh~---qL~yci~qFveKDp~--L-a~~vi~gLLk~WP~t 361 (508)
.+.+.-...+. +.|-. | ..+..+. .+.. .+.-.+.+-+..+-. + ...++..++..|.-.
T Consensus 562 ~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~ 641 (852)
T 4fdd_A 562 GFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK 641 (852)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCC
Confidence 22221111111 11110 0 0010110 0111 111222233332211 0 024566666767544
Q ss_pred CChHHHHHHHHHHHHHhhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHhhccccccccccHHHHh
Q 010510 362 NSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVILPIIFPALEK 441 (508)
Q Consensus 362 ns~KEv~FL~EleeiLe~~~~~eF~~i~~pLF~~la~Ci~S~hfqVAErAL~lWnNe~i~~li~~n~~~IlPii~paL~~ 441 (508)
++.=......-+.++...+. ++|...+..+...+.++++...+.|-..|. |-=-.+...+..+-...++-+++.|.+
T Consensus 642 ~~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~--~alg~i~~~~~~~~~p~~~~il~~L~~ 718 (852)
T 4fdd_A 642 MPEVRQSSFALLGDLTKACF-QHVKPCIADFMPILGTNLNPEFISVCNNAT--WAIGEISIQMGIEMQPYIPMVLHQLVE 718 (852)
T ss_dssp SHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHTCCTTSHHHHHHHH--HHHHHHHHHHGGGGGGGTHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHHHcCccchHHHHHHH--HHHHHHHHHhhHhHHHHHHHHHHHHHH
Confidence 44333355667777777665 688888888889999999888888865554 444455555544444444556666665
Q ss_pred hhc-ccchHHHHHHHHHHHHHHHhhCHHHH
Q 010510 442 NGC-NHWNQVVQNLTVNVRKIFSEIDPELF 470 (508)
Q Consensus 442 ~s~-~HWn~~V~~la~~vlk~l~e~D~~lf 470 (508)
..+ .+-+.+|+.-+..++--|....|+..
T Consensus 719 ~l~~~~~~~~~~~~a~~~igrl~~~~~~~~ 748 (852)
T 4fdd_A 719 IINRPNTPKTLLENTAITIGRLGYVCPQEV 748 (852)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HhCCCCCCchHHHHHHHHHHHHHHhCHHHh
Confidence 443 35678899888888888888888765
No 16
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=72.21 E-value=47 Score=38.24 Aligned_cols=98 Identities=16% Similarity=0.242 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHhh-------ccccccccccHH
Q 010510 366 EVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQ-------NRKVILPIIFPA 438 (508)
Q Consensus 366 Ev~FL~EleeiLe~~~~~eF~~i~~pLF~~la~Ci~S~hfqVAErAL~lWnNe~i~~li~~-------n~~~IlPii~pa 438 (508)
..--+..+..+++...++.|.....++...+..|+...+..|+..|+..+. .++..+.. .-...++.++|.
T Consensus 494 ~~~a~~~l~~~~~~~~~~~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~--~l~~~~~~~~~~~~~~~~~~~~~ll~~ 571 (1230)
T 1u6g_C 494 KIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQ--QLVKVIRPLDQPSSFDATPYIKDLFTC 571 (1230)
T ss_dssp HHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHH--HHHHHHCCSSSCCCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHHHcccchHHHHHHHHHHH--HHHHHhcCcccccccchHHHHHHHHHH
Confidence 344577788888888888887777778888888999999999877766553 34433332 111122344555
Q ss_pred HHhhh-cccchHHHHHHHHHHHHHHHhh
Q 010510 439 LEKNG-CNHWNQVVQNLTVNVRKIFSEI 465 (508)
Q Consensus 439 L~~~s-~~HWn~~V~~la~~vlk~l~e~ 465 (508)
+.... ....+..||..+..++..+.+.
T Consensus 572 ll~~l~~~d~~~~vr~~a~~~lg~L~~~ 599 (1230)
T 1u6g_C 572 TIKRLKAADIDQEVKERAISCMGQIICN 599 (1230)
T ss_dssp HHHHHSCSSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 44332 2567889999998888887764
No 17
>2km4_A Regulator of TY1 transposition protein 103; CTD-interacting domain, RNA polymerase II binding protein, phosphoprotein; NMR {Saccharomyces cerevisiae} PDB: 2l0i_A*
Probab=67.30 E-value=14 Score=32.66 Aligned_cols=84 Identities=13% Similarity=0.195 Sum_probs=62.4
Q ss_pred HHHHHhCcccHHHHHHHhhccCCCC--CChHHHHHHHHHHHHHhhCC-------hhHHHhhHHHHHHHHHHHhCCCcHHH
Q 010510 337 TQFVEKDCKLADTVIKGLLKYWPIT--NSSKEVMFLSELEEVLEATQ-------PPEFQKCMVPLFRQIASCLSSSHFQV 407 (508)
Q Consensus 337 ~qFveKDp~La~~vi~gLLk~WP~t--ns~KEv~FL~EleeiLe~~~-------~~eF~~i~~pLF~~la~Ci~S~hfqV 407 (508)
.+|+-....-+..++..+.++==.. ++.|-+-+|.-+.+|+..+- -..|.++++++|..+....++.+-+.
T Consensus 26 s~W~l~h~~~a~~iv~~~~~~l~~~~~~~~kKL~~lYL~NDVlqnsk~k~~~~f~~~F~~~L~~~~~~~~~~~~~~~~~k 105 (142)
T 2km4_A 26 SKWLLLQYRDAPKVAEMWKEYMLRPSVNTRRKLLGLYLMNHVVQQAKGQKIIQFQDSFGKVAAEVLGRINQEFPRDLKKK 105 (142)
T ss_dssp HHHHHTCGGGHHHHHHHHHHHHTSSSSCHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHTHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhcCCCccceehhhhhHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3454445555555555555554443 66889999999999997543 24688899999999998878888899
Q ss_pred HHHHHhhhcchhH
Q 010510 408 AERALYLWNNDHI 420 (508)
Q Consensus 408 AErAL~lWnNe~i 420 (508)
.+|-+.+|..-.+
T Consensus 106 v~rvl~iWeer~v 118 (142)
T 2km4_A 106 LSRVVNILKERNI 118 (142)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHhhccCC
Confidence 9999999976443
No 18
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=59.01 E-value=87 Score=35.96 Aligned_cols=178 Identities=11% Similarity=0.111 Sum_probs=84.6
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHhc-cccCChHHHHHHHHHHHHHhhhcccCCcCh-HHHHHHHHHHHhccCCCcH
Q 010510 228 FVLKLLDLFDSEDPREREYLKTILHRIYG-KFMVHRPFIRKAINNIFFRFIFETEKHNGI-AELLEVLGSIINGFALPLK 305 (508)
Q Consensus 228 Fv~~Ll~lfdSeDpRERd~LKtiLHriYg-Kf~~~R~fIRk~Innif~~fiyEte~~nGI-aELLeIlgSIInGFa~PLK 305 (508)
-+.+||+-+.|+|+..|-.--.-|...+. .+....+-..+.+-..+.+.+-. ....+ ......++.+..+..
T Consensus 7 ~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~~~~---- 80 (1230)
T 1u6g_C 7 HISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLED--KNGEVQNLAVKCLGPLVSKVK---- 80 (1230)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHTTSC----
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhCC----
Confidence 35678888889999888755444443332 22222222222222333344421 11111 123456677776542
Q ss_pred HHHHHHHHHHhhcCCCCCCccccchhHHHHHHHHHHhCcc----------cHHHHHHHhhccCC-CCCChHHHHHHHHHH
Q 010510 306 EEHKLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKDCK----------LADTVIKGLLKYWP-ITNSSKEVMFLSELE 374 (508)
Q Consensus 306 eEHk~Fl~rvLiPLHk~~~~~~yh~qL~yci~qFveKDp~----------La~~vi~gLLk~WP-~tns~KEv~FL~Ele 374 (508)
+++...+...|+..-....-.. ...-+.|+.++++.-+. ....++..|++.== ..+.....-=+.-+.
T Consensus 81 ~~~~~~i~~~Ll~~l~d~~~~v-R~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~ 159 (1230)
T 1u6g_C 81 EYQVETIVDTLCTNMLSDKEQL-RDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMA 159 (1230)
T ss_dssp HHHHHHHHHHHHHHTTCSSSHH-HHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCcHHH-HHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 2555555555665433333222 22345666666644332 12233332222110 111122222233344
Q ss_pred HHHhhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHh
Q 010510 375 EVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALY 413 (508)
Q Consensus 375 eiLe~~~~~eF~~i~~pLF~~la~Ci~S~hfqVAErAL~ 413 (508)
++++... ..+......+...+..++.+++..|-++|+.
T Consensus 160 ~~~~~~~-~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~ 197 (1230)
T 1u6g_C 160 DMLSRQG-GLLVNFHPSILTCLLPQLTSPRLAVRKRTII 197 (1230)
T ss_dssp HHHHHTC-SSCTTTHHHHHHHHGGGGGCSSHHHHHHHHH
T ss_pred HHHHHhH-hHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 4444322 2233344667777888889999888888865
No 19
>4fu3_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, domain swapping, transc; HET: MSE; 1.90A {Homo sapiens} PDB: 4fld_A*
Probab=57.90 E-value=21 Score=30.80 Aligned_cols=85 Identities=18% Similarity=0.311 Sum_probs=65.1
Q ss_pred HHHHHHHHHhCcccHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCC------hhHHHhhHHHHHHHHHHHhCCCcHH
Q 010510 333 SYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQ------PPEFQKCMVPLFRQIASCLSSSHFQ 406 (508)
Q Consensus 333 ~yci~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~------~~eF~~i~~pLF~~la~Ci~S~hfq 406 (508)
..=+++|+-...+-+..++..+.++=-.+.+.+-+-+|.-+.+|+-.+. -..|+++++++|..+.+..+..+-+
T Consensus 23 I~~~s~w~l~~~~~a~~iv~~i~~~l~~~~~~~KL~~LYLindIl~ns~~~~~~y~~~f~~~l~~~~~~~~~~~~~~~k~ 102 (135)
T 4fu3_A 23 VQTLSLWLIHHRKHAGPIVSVWHRELRKAKSNRKLTFLYLANDVIQNSKRKGPEFTREFESVLVDAFSHVAREADEGCKK 102 (135)
T ss_dssp HHHHHHHHHHTGGGHHHHHHHHHHHHHHSCTTTHHHHHHHHHHHHHHHTTTCSHHHHHHHTTHHHHHHHHHHHHHTTSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 3444556555666677777777666666777788999999999986542 2458889999999999888888888
Q ss_pred HHHHHHhhhcc
Q 010510 407 VAERALYLWNN 417 (508)
Q Consensus 407 VAErAL~lWnN 417 (508)
...|-+.+|..
T Consensus 103 kl~kll~iW~~ 113 (135)
T 4fu3_A 103 PLERLLNIWQE 113 (135)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhcC
Confidence 88999999985
No 20
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=56.86 E-value=1e+02 Score=32.55 Aligned_cols=175 Identities=13% Similarity=0.157 Sum_probs=104.2
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCcHH
Q 010510 227 SFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKE 306 (508)
Q Consensus 227 ~Fv~~Ll~lfdSeDpRERd~LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFa~PLKe 306 (508)
..+..|++.+.+.|..-|..+-.-++++-.||...-.+ .+ +.+.+++-.. .-.-..|.+..++.|+.++. -+++
T Consensus 353 ~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~~~---~v-~~Ll~ll~~~-~~~v~~e~i~~l~~ii~~~p-~~~~ 426 (591)
T 2vgl_B 353 QVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAER---CV-STLLDLIQTK-VNYVVQEAIVVIRDIFRKYP-NKYE 426 (591)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHHHH---HH-HHHHHHHHTC-CHHHHHHHHHHHHHHHHHSC-SSCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHHHH---HH-HHHHHHHccc-chHHHHHHHHHHHHHHHHCc-chHH
Confidence 35667888888889988888888888888776432222 22 4445554221 11224667778888887753 2222
Q ss_pred HHHHHHHHHhhcCCCCCCccccchhHHHHHHHHHHhCcccHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCChhHHH
Q 010510 307 EHKLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQ 386 (508)
Q Consensus 307 EHk~Fl~rvLiPLHk~~~~~~yh~qL~yci~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~~eF~ 386 (508)
.-...|...|-.+.. +.-.....+|+-+|.+.-+. ...+++.+++-....++.=+...|.-+-.+....+. +.+
T Consensus 427 ~~v~~L~~~l~~~~~----~~~~~~~~wilGey~~~~~~-~~~~l~~l~~~~~~~~~~vr~~~l~a~~Kl~~~~p~-~~~ 500 (591)
T 2vgl_B 427 SIIATLCENLDSLDE----PDARAAMIWIVGEYAERIDN-ADELLESFLEGFHDESTQVQLTLLTAIVKLFLKKPS-ETQ 500 (591)
T ss_dssp TTHHHHHHTTTTCCS----HHHHHHHHHHHHTTCTTCTT-HHHHHHHHSTTCSSSCHHHHHHHHHHHHHHHTTCCS-TTH
T ss_pred HHHHHHHHHHHhccC----HHHHHHHHHHHHcccccccC-HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCch-HHH
Confidence 222233333321111 11245567788888655443 678899999888766555445566666666655432 222
Q ss_pred hhHHHHHHHHHHHh-CCCcHHHHHHHHhhhc
Q 010510 387 KCMVPLFRQIASCL-SSSHFQVAERALYLWN 416 (508)
Q Consensus 387 ~i~~pLF~~la~Ci-~S~hfqVAErAL~lWn 416 (508)
... -..+..|. +|.+..|=+||..+|.
T Consensus 501 ~~i---~~ll~~~~~d~~d~evrdRA~~y~~ 528 (591)
T 2vgl_B 501 ELV---QQVLSLATQDSDNPDLRDRGYIYWR 528 (591)
T ss_dssp HHH---HHHHHHHHTTCCCHHHHHHHHHHHT
T ss_pred HHH---HHHHHHhhhcCCChHHHHHHHHHHH
Confidence 222 23444554 5789999999998875
No 21
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=53.93 E-value=1.1e+02 Score=31.37 Aligned_cols=227 Identities=13% Similarity=0.090 Sum_probs=109.0
Q ss_pred ccCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccccCChHHHHH-HHHHHHHHhhhcccCCcChHHHHHHHHHHHhcc
Q 010510 222 RYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRK-AINNIFFRFIFETEKHNGIAELLEVLGSIINGF 300 (508)
Q Consensus 222 ~~id~~Fv~~Ll~lfdSeDpRERd~LKtiLHriYgKf~~~R~fIRk-~Innif~~fiyEte~~nGIaELLeIlgSIInGF 300 (508)
..++...+-.|+.++.++|+.=|+..-..|..|-+.-...|..+.. .+-..+.+.+.. ....-....+..|+.+..+-
T Consensus 168 ~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~L~~~~ 246 (530)
T 1wa5_B 168 VVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSNLCRGK 246 (530)
T ss_dssp HHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHHHHCCS
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHHHhCCC
Confidence 3334455667888888899999999888888887643333433321 222344444433 11112344567777777664
Q ss_pred CCCcHHHHHHHHHHHhhcCCCCCCccccchhHHHHHHHHHHhCc---------ccHHHHHHHhhccCCCCCChHHHHHHH
Q 010510 301 ALPLKEEHKLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEKDC---------KLADTVIKGLLKYWPITNSSKEVMFLS 371 (508)
Q Consensus 301 a~PLKeEHk~Fl~rvLiPLHk~~~~~~yh~qL~yci~qFveKDp---------~La~~vi~gLLk~WP~tns~KEv~FL~ 371 (508)
..........-....|+.|.+...-. -......|+......++ .+...++. ++++ .+..-...-+.
T Consensus 247 ~~~~~~~~~~~~l~~L~~lL~~~d~~-v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~-lL~~---~~~~v~~~a~~ 321 (530)
T 1wa5_B 247 KPQPDWSVVSQALPTLAKLIYSMDTE-TLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVE-LLSH---ESTLVQTPALR 321 (530)
T ss_dssp SSCCCHHHHGGGHHHHHHHTTCCCHH-HHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHH-GGGC---SCHHHHHHHHH
T ss_pred CCCCcHHHHHhHHHHHHHHHcCCCHH-HHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHH-HHCC---CChhhHHHHHH
Confidence 22223333333445566665543311 11122334443333332 23333333 2322 11110001111
Q ss_pred HHHHHHhhCChhHHHhhH-HHHHHHHHHHhCCCcHHHHHHHHhhhcc------hhHHHHHhhccccccccccHHHHhhhc
Q 010510 372 ELEEVLEATQPPEFQKCM-VPLFRQIASCLSSSHFQVAERALYLWNN------DHIENLIRQNRKVILPIIFPALEKNGC 444 (508)
Q Consensus 372 EleeiLe~~~~~eF~~i~-~pLF~~la~Ci~S~hfqVAErAL~lWnN------e~i~~li~~n~~~IlPii~paL~~~s~ 444 (508)
=|..+.. -.+...+.+. ..+...|..++.+++..|-+.|+....| +.+..++. ..++|.++..|.
T Consensus 322 ~L~~l~~-~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~---~~~l~~L~~lL~---- 393 (530)
T 1wa5_B 322 AVGNIVT-GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVID---ANLIPPLVKLLE---- 393 (530)
T ss_dssp HHHHHTT-SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH---TTCHHHHHHHHH----
T ss_pred HHHHHHc-CCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH---CCCHHHHHHHHh----
Confidence 1221111 1122222221 2466677888899999998888766544 22222221 235555555543
Q ss_pred ccchHHHHHHHHHHHHHHH
Q 010510 445 NHWNQVVQNLTVNVRKIFS 463 (508)
Q Consensus 445 ~HWn~~V~~la~~vlk~l~ 463 (508)
+-+..|+..+..++.-+.
T Consensus 394 -~~~~~v~~~a~~aL~~l~ 411 (530)
T 1wa5_B 394 -VAEYKTKKEACWAISNAS 411 (530)
T ss_dssp -HSCHHHHHHHHHHHHHHH
T ss_pred -cCCHHHHHHHHHHHHHHH
Confidence 225566666666665443
No 22
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=53.88 E-value=75 Score=30.03 Aligned_cols=87 Identities=10% Similarity=0.135 Sum_probs=57.2
Q ss_pred HHHHHHhhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHhhccc------ccc-ccccHHHHhhhc
Q 010510 372 ELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRK------VIL-PIIFPALEKNGC 444 (508)
Q Consensus 372 EleeiLe~~~~~eF~~i~~pLF~~la~Ci~S~hfqVAErAL~lWnNe~i~~li~~n~~------~Il-Pii~paL~~~s~ 444 (508)
-+..+++.++|.........++..|..++.+.+.||=+.|+.+. ..++..... ..+ |-++|.|.+..
T Consensus 127 al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l-----~~~~~~~~~~~~~l~~~l~~~iip~l~~~l- 200 (249)
T 2qk1_A 127 ALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLF-----NASMKEEKDGYSTLQRYLKDEVVPIVIQIV- 200 (249)
T ss_dssp HHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHH-----HHHHHHCCSCSHHHHHHHTTTHHHHHHHHH-
T ss_pred HHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHH-----HHHHHHcCCcchhHHHHHHHHHHHHHHHHh-
Confidence 35566666655221111446777788889999999999888764 333333321 135 77778777665
Q ss_pred ccchHHHHHHHHHHHHHHHh
Q 010510 445 NHWNQVVQNLTVNVRKIFSE 464 (508)
Q Consensus 445 ~HWn~~V~~la~~vlk~l~e 464 (508)
++=+..||..|..++..++.
T Consensus 201 ~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 201 NDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 44488899999998887664
No 23
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=49.44 E-value=2e+02 Score=32.01 Aligned_cols=80 Identities=4% Similarity=-0.038 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHhhhcc--------hhHHHHHhhccccccccccHHHHhhhcccchHHHHHHHHHHHH
Q 010510 389 MVPLFRQIASCLSSSHFQVAERALYLWNN--------DHIENLIRQNRKVILPIIFPALEKNGCNHWNQVVQNLTVNVRK 460 (508)
Q Consensus 389 ~~pLF~~la~Ci~S~hfqVAErAL~lWnN--------e~i~~li~~n~~~IlPii~paL~~~s~~HWn~~V~~la~~vlk 460 (508)
...+|.....|+..+|.-++..|+.+|.+ +.+.+++......++..++.++. .+=..++...+..+++
T Consensus 827 l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~~~~~~~~~~~~~g~~l~~~l~~~~~----~~~~~s~~~~~a~~l~ 902 (971)
T 2x1g_F 827 YDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSRNHAHVTEVVLATGEQTLYTAMMCVG----YLTPRSQVDKFADILL 902 (971)
T ss_dssp HHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHH----TTSCGGGGGGGHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhHHHHHHHHHHHhc----ccCChhHHHHHHHHHH
Confidence 56788888889999998889999999965 22333333333333344444332 1222333333445566
Q ss_pred HHHhhCHHHHHH
Q 010510 461 IFSEIDPELFDE 472 (508)
Q Consensus 461 ~l~e~D~~lf~~ 472 (508)
.+....|..+..
T Consensus 903 ~l~~~~~~~~~~ 914 (971)
T 2x1g_F 903 AMNRKYAAEMAV 914 (971)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHCcHHHHH
Confidence 555556654444
No 24
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=48.72 E-value=2.3e+02 Score=28.76 Aligned_cols=104 Identities=20% Similarity=0.118 Sum_probs=58.3
Q ss_pred HHhhccCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHhccccCChHHHHH-HHHHHHHHhhhcccCCcChHHHHHHHHHH
Q 010510 218 KLAKRYIDHSFVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRK-AINNIFFRFIFETEKHNGIAELLEVLGSI 296 (508)
Q Consensus 218 k~ak~~id~~Fv~~Ll~lfdSeDpRERd~LKtiLHriYgKf~~~R~fIRk-~Innif~~fiyEte~~nGIaELLeIlgSI 296 (508)
...+..++...|-.|+.++.++++.-|+..-..|.+|-+.-...|..+.. -+-..+.+.+..+....-.......|+.+
T Consensus 151 ~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L 230 (528)
T 4b8j_A 151 ENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNF 230 (528)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 33444455567888999999999999999998988887543333444332 11123444442322222345566777777
Q ss_pred HhccCCCcHHHHHHHHHHHhhcCCCC
Q 010510 297 INGFALPLKEEHKLFLIRALIPLHKP 322 (508)
Q Consensus 297 InGFa~PLKeEHk~Fl~rvLiPLHk~ 322 (508)
..+...+-. ....-....|+.|-..
T Consensus 231 ~~~~~~~~~-~~~~~~l~~L~~lL~~ 255 (528)
T 4b8j_A 231 CRGKPQPSF-EQTRPALPALARLIHS 255 (528)
T ss_dssp HCSSSCCCH-HHHTTHHHHHHHHTTC
T ss_pred HcCCCCCcH-HHHHHHHHHHHHHHCC
Confidence 766532222 2222234445555443
No 25
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=45.66 E-value=2.6e+02 Score=28.39 Aligned_cols=159 Identities=15% Similarity=0.136 Sum_probs=104.1
Q ss_pred CCcChHHHHHHHHHHHhccCCCcHHHHHHHH--HHHhhcCCCCCCccccchhHHHHHHHHHHhCcccHHHHHHHhhccCC
Q 010510 282 KHNGIAELLEVLGSIINGFALPLKEEHKLFL--IRALIPLHKPKCLAMYHQPLSYCITQFVEKDCKLADTVIKGLLKYWP 359 (508)
Q Consensus 282 ~~nGIaELLeIlgSIInGFa~PLKeEHk~Fl--~rvLiPLHk~~~~~~yh~qL~yci~qFveKDp~La~~vi~gLLk~WP 359 (508)
.+-|-.|..+++..+++-|+.+-.+.-|.-+ ...+.+. .+.+..++..+.||-.=..+.++|+-
T Consensus 59 ~~f~~~e~t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~----------~~e~iLv~Nsl~kDl~~~N~~iR~lA---- 124 (355)
T 3tjz_B 59 EHLGTTEATEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCI----------AEDVIIVTSSLTKDMTGKEDSYRGPA---- 124 (355)
T ss_dssp CCCCHHHHHHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTT----------SSCGGGGHHHHHHHHHSSCHHHHHHH----
T ss_pred CCCchhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC----------HHHHHHHHHHHHhhcCCCcHhHHHHH----
Confidence 4668889999999999999998887655433 3344443 12344677788888777778888875
Q ss_pred CCCChHHHHHHHHHHHHHhhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHhhccccccccccHHH
Q 010510 360 ITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNRKVILPIIFPAL 439 (508)
Q Consensus 360 ~tns~KEv~FL~EleeiLe~~~~~eF~~i~~pLF~~la~Ci~S~hfqVAErAL~lWnNe~i~~li~~n~~~IlPii~paL 439 (508)
|.=|-.| .+++ +..++..-+-+|+.+.|.-|.-.|+.- ...++..+++.+- -.+..+
T Consensus 125 ----------LRtL~~I---~~~~----m~~~l~~~lk~~L~d~~pyVRk~A~l~-----~~kL~~~~pe~v~-~~~~~l 181 (355)
T 3tjz_B 125 ----------VRALCQI---TDST----MLQAIERYMKQAIVDKVPSVSSSALVS-----SLHLLKCSFDVVK-RWVNEA 181 (355)
T ss_dssp ----------HHHHHHH---CCTT----THHHHHHHHHHHHTCSSHHHHHHHHHH-----HHHHTTTCHHHHH-TTHHHH
T ss_pred ----------HHHHhcC---CCHH----HHHHHHHHHHHHcCCCCHHHHHHHHHH-----HHHHhccCHHHHH-HHHHHH
Confidence 2222222 2232 456788889999999999999999876 3345544444332 244444
Q ss_pred HhhhcccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 010510 440 EKNGCNHWNQVVQNLTVNVRKIFSEIDPELFDECLQKFK 478 (508)
Q Consensus 440 ~~~s~~HWn~~V~~la~~vlk~l~e~D~~lf~~~~~~~~ 478 (508)
.... .-=|..|+.-|..++--+.+.|+..+......+.
T Consensus 182 ~~ll-~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~ 219 (355)
T 3tjz_B 182 QEAA-SSDNIMVQYHALGLLYHVRKNDRLAVSKMISKFT 219 (355)
T ss_dssp HHHT-TCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHh-cCCCccHHHHHHHHHHHHHhhchHHHHHHHHHHh
Confidence 4332 3346677776777777777778777666655543
No 26
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=42.97 E-value=4e+02 Score=29.79 Aligned_cols=33 Identities=15% Similarity=0.322 Sum_probs=26.0
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHhccc
Q 010510 226 HSFVLKLLDLFDSEDPREREYLKTILHRIYGKF 258 (508)
Q Consensus 226 ~~Fv~~Ll~lfdSeDpRERd~LKtiLHriYgKf 258 (508)
+.++-.|+.++.|.|+..+...-.+||.|..++
T Consensus 122 p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~ 154 (960)
T 1wa5_C 122 PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRW 154 (960)
T ss_dssp TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGG
T ss_pred hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Confidence 357778888888888888887777888887754
No 27
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=42.61 E-value=2.3e+02 Score=31.68 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=36.8
Q ss_pred HHHHHhhcCCCC-----ChhHHHHHHHHHHHHhcccc-CChHHHHHHHHHHHHHhh---hcccCCcChHHHHHHHHHHHh
Q 010510 228 FVLKLLDLFDSE-----DPREREYLKTILHRIYGKFM-VHRPFIRKAINNIFFRFI---FETEKHNGIAELLEVLGSIIN 298 (508)
Q Consensus 228 Fv~~Ll~lfdSe-----DpRERd~LKtiLHriYgKf~-~~R~fIRk~Innif~~fi---yEte~~nGIaELLeIlgSIIn 298 (508)
.+.+|+.+++.. +..|.+++-..|.++...+- ...||+-..+..+...+- -+.+...=...++|.+|+|+.
T Consensus 549 ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~ 628 (960)
T 1wa5_C 549 LLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFPQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILN 628 (960)
T ss_dssp HHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 455677777764 12256677777766644321 133555444432222211 111111112458999999998
Q ss_pred c
Q 010510 299 G 299 (508)
Q Consensus 299 G 299 (508)
.
T Consensus 629 ~ 629 (960)
T 1wa5_C 629 Y 629 (960)
T ss_dssp T
T ss_pred c
Confidence 7
No 28
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=42.17 E-value=1.8e+02 Score=31.30 Aligned_cols=57 Identities=11% Similarity=0.124 Sum_probs=41.1
Q ss_pred cHHHHHHHhhccCCCCCCh-----HHHHHHHHHHHHHhhCC-hhHHHhhHHHHHHHHHHHhCC
Q 010510 346 LADTVIKGLLKYWPITNSS-----KEVMFLSELEEVLEATQ-PPEFQKCMVPLFRQIASCLSS 402 (508)
Q Consensus 346 La~~vi~gLLk~WP~tns~-----KEv~FL~EleeiLe~~~-~~eF~~i~~pLF~~la~Ci~S 402 (508)
+...+.+.++-.|=..... .++-+|.-+.|+...+. .++-..+..++|..|-.++=-
T Consensus 261 Fv~y~~~kIlP~l~~L~e~~~~~~~kL~LLK~lAE~s~~~~~~e~a~~~l~~iy~~L~~ymP~ 323 (507)
T 3u0r_A 261 FVTYFCEQVLPNLGTLTTPVEGLDIQLEVLKLLAEMSSFCGDMEKLETNLRKLFDKLLEYMPL 323 (507)
T ss_dssp HHHHHHHHTGGGTTCCCCC--CCCHHHHHHHHHHHHHTTCCCCTTHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHhhccchhhccccccchHHHHHHHHHHHHHccCCCccchHHHHHHHHHHHHHHHCCC
Confidence 4555566677677766665 77888888888888886 666667778888888766643
No 29
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=41.75 E-value=64 Score=29.54 Aligned_cols=91 Identities=12% Similarity=0.043 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhhCC---hhHHHhhHHHHHHHHHHHhC-CCcHHHHHHHHhhhcchhHHHHHhhccccccccccHHHHhhh
Q 010510 368 MFLSELEEVLEATQ---PPEFQKCMVPLFRQIASCLS-SSHFQVAERALYLWNNDHIENLIRQNRKVILPIIFPALEKNG 443 (508)
Q Consensus 368 ~FL~EleeiLe~~~---~~eF~~i~~pLF~~la~Ci~-S~hfqVAErAL~lWnNe~i~~li~~n~~~IlPii~paL~~~s 443 (508)
.=+..|..+++..+ ..++ ..++..|.+++. .+|.+|.+.|+.... .+...+...-....+.++|+|.+..
T Consensus 34 ~a~~~L~~l~~~~~~~~~~~~----~~i~~~L~~~l~kd~~~~V~~~a~~~l~--~la~~l~~~~~~~~~~ilp~ll~~l 107 (242)
T 2qk2_A 34 ESLEVLEKLLTDHPKLENGEY----GALVSALKKVITKDSNVVLVAMAGKCLA--LLAKGLAKRFSNYASACVPSLLEKF 107 (242)
T ss_dssp HHHHHHHHHHHHCSSBCCCCC----HHHHHHHHHHHHHCSCHHHHHHHHHHHH--HHHHHHGGGGHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHccCCCCCCCCH----HHHHHHHHHHhccCCCHHHHHHHHHHHH--HHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 34566777776532 2223 345666677774 789999888876543 2223332222233445666666654
Q ss_pred cccchHHHHHHHHHHHHHHHhh
Q 010510 444 CNHWNQVVQNLTVNVRKIFSEI 465 (508)
Q Consensus 444 ~~HWn~~V~~la~~vlk~l~e~ 465 (508)
... ++.||..+..++.-+.+.
T Consensus 108 ~d~-~~~vr~~a~~aL~~~~~~ 128 (242)
T 2qk2_A 108 KEK-KPNVVTALREAIDAIYAS 128 (242)
T ss_dssp GCC-CHHHHHHHHHHHHHHHTT
T ss_pred cCC-CHHHHHHHHHHHHHHHHc
Confidence 433 678888888888877764
No 30
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=40.79 E-value=2.6e+02 Score=27.12 Aligned_cols=27 Identities=26% Similarity=0.429 Sum_probs=21.6
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHhhhcc
Q 010510 391 PLFRQIASCLSSSHFQVAERALYLWNN 417 (508)
Q Consensus 391 pLF~~la~Ci~S~hfqVAErAL~lWnN 417 (508)
.++..+..|+.+..-.|...|+.+|.+
T Consensus 259 ~l~~~~~~~~~~~~~~v~~~a~~~l~~ 285 (462)
T 1ibr_B 259 ALFAITIEAMKSDIDEVALQGIEFWSN 285 (462)
T ss_dssp THHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 566667777888888899999999864
No 31
>1eyh_A Epsin; superhelix of helices, cell cycle; 1.56A {Rattus norvegicus} SCOP: a.118.9.1 PDB: 1h0a_A* 1edu_A
Probab=40.05 E-value=2e+02 Score=25.57 Aligned_cols=108 Identities=11% Similarity=0.232 Sum_probs=68.5
Q ss_pred HHHHHHhhccCCCCCChHHHHHHHHHHHHHhhC-ChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHhhhc------chhH
Q 010510 348 DTVIKGLLKYWPITNSSKEVMFLSELEEVLEAT-QPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWN------NDHI 420 (508)
Q Consensus 348 ~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~-~~~eF~~i~~pLF~~la~Ci~S~hfqVAErAL~lWn------Ne~i 420 (508)
+.-|+.--+.=|...+.| .|++|...+ +.++|..||.-|.+||.. ...+-.+.-.||.+.. ++.+
T Consensus 7 E~~VreAT~~d~wGP~~~------~m~eIa~~T~~~~~~~~Im~~l~kRL~d--~~k~Wr~vyKaL~lleyLl~nGse~v 78 (144)
T 1eyh_A 7 EIKVREATSNDPWGPSSS------LMSEIADLTYNVVAFSEIMSMIWKRLND--HGKNWRHVYKAMTLMEYLIKTGSERV 78 (144)
T ss_dssp HHHHHHHTCSSSSCCCHH------HHHHHHHHTTSHHHHHHHHHHHHHHHSC--CGGGHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHhCCCCCCCCHH------HHHHHHHHhCCHhhHHHHHHHHHHHHcc--CCcchHHHhHHHHHHHHHHHhCCHHH
Confidence 344455555545566665 456777776 788999999999998852 1245677777777654 3555
Q ss_pred HHHHhhccccccccc-cHHHHhhhcccchHHHHHHHHHHHHHHHh
Q 010510 421 ENLIRQNRKVILPII-FPALEKNGCNHWNQVVQNLTVNVRKIFSE 464 (508)
Q Consensus 421 ~~li~~n~~~IlPii-~paL~~~s~~HWn~~V~~la~~vlk~l~e 464 (508)
+.-+.++...|..+= |.-+... -..|...||..|..++.+|.|
T Consensus 79 v~~~~~~~~~i~~L~~F~y~d~~-g~D~G~~VR~kak~l~~Ll~D 122 (144)
T 1eyh_A 79 SQQCKENMYAVQTLKDFQYVDRD-GKDQGVNVREKAKQLVALLRD 122 (144)
T ss_dssp HHHHHHTHHHHHGGGGCCCBCTT-SCBCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhHHHhhhccceeeCCC-ccchHHHHHHHHHHHHHHHCC
Confidence 555555544333220 1111112 346899999999999998876
No 32
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=39.39 E-value=2.7e+02 Score=29.60 Aligned_cols=174 Identities=12% Similarity=0.108 Sum_probs=85.5
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCcHHHH
Q 010510 229 VLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEEH 308 (508)
Q Consensus 229 v~~Ll~lfdSeDpRERd~LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFa~PLKeEH 308 (508)
+..|++.+.+.|+.=|..+-.-++++-.||...-.|.- +.+.+++-.... .-..|++..+..|+... .-+++.-
T Consensus 387 v~eL~~~l~~~d~e~r~~~v~~I~~la~k~~~~~~~~v----~~ll~lL~~~~~-~v~~~~~~~l~~ii~~~-p~l~~~~ 460 (618)
T 1w63_A 387 MKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHI----DTIMRVLTTAGS-YVRDDAVPNLIQLITNS-VEMHAYT 460 (618)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHHHHSSCCCHHHHH----HHHHHHHHHTGG-GSCSSHHHHHHHHHHHS-CSTHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhCccHHHHH----HHHHHHHHhccc-hhHHHHHHHHHHHHhcC-hhHHHHH
Confidence 34455555556666666666666666666644332222 122233322211 12234555555555432 2333322
Q ss_pred HHHHHHHhhcCCCCCCccccchhHHHHHHHHHHh--------------CcccHHHHHHHhhccCCCCCChHHHHHHHHHH
Q 010510 309 KLFLIRALIPLHKPKCLAMYHQPLSYCITQFVEK--------------DCKLADTVIKGLLKYWPITNSSKEVMFLSELE 374 (508)
Q Consensus 309 k~Fl~rvLiPLHk~~~~~~yh~qL~yci~qFveK--------------Dp~La~~vi~gLLk~WP~tns~KEv~FL~Ele 374 (508)
..-|...|---.... .. ..-.++|+-+|.+. +|+.+..+++.+++.+ ..++.=...-|.=+.
T Consensus 461 v~~L~~~l~~~~~~~--~~-~~~~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~vr~~~lta~~ 536 (618)
T 1w63_A 461 VQRLYKAILGDYSQQ--PL-VQVAAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISN-MSTSVTRGYALTAIM 536 (618)
T ss_dssp HHHHHHHHHHCCSCS--HH-HHHHHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHHHST-TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccH--HH-HHHHHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHH
Confidence 222333332101111 11 23467788888642 3445566666666655 222222233344444
Q ss_pred HHHhhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHhhhcc
Q 010510 375 EVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWNN 417 (508)
Q Consensus 375 eiLe~~~~~eF~~i~~pLF~~la~Ci~S~hfqVAErAL~lWnN 417 (508)
.+.-..+ +. ...+-+.|..|.+|.+..|=+||..+|+-
T Consensus 537 Kl~~~~~-~~----~~~l~~~L~~~~~~~d~evrdRA~~y~~l 574 (618)
T 1w63_A 537 KLSTRFT-CT----VNRIKKVVSIYGSSIDVELQQRAVEYNAL 574 (618)
T ss_dssp HHHTTCS-SC----HHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHhCc-ch----HHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 4433332 21 23344557788999999999999999864
No 33
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=37.82 E-value=1.3e+02 Score=33.40 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhCC-----CcHHHHHHHHhhhcc
Q 010510 390 VPLFRQIASCLSS-----SHFQVAERALYLWNN 417 (508)
Q Consensus 390 ~pLF~~la~Ci~S-----~hfqVAErAL~lWnN 417 (508)
..+...+..|... ..-.|+..|+.+|.+
T Consensus 334 ~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~ 366 (963)
T 2x19_B 334 LALVNMIMFCTGIPGHYPVNETTSSLTLTFWYT 366 (963)
T ss_dssp HHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHH
Confidence 4566777777763 345678889999975
No 34
>3onk_A Epsin-3, ENT3; helix, protein transport; 2.09A {Saccharomyces cerevisiae} PDB: 3onl_A
Probab=34.34 E-value=1.1e+02 Score=27.65 Aligned_cols=109 Identities=15% Similarity=0.196 Sum_probs=67.1
Q ss_pred HHHHHHhhccCCCCCChHHHHHHHHHHHHHhhC-ChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHhhhc------chhH
Q 010510 348 DTVIKGLLKYWPITNSSKEVMFLSELEEVLEAT-QPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWN------NDHI 420 (508)
Q Consensus 348 ~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~-~~~eF~~i~~pLF~~la~Ci~S~hfqVAErAL~lWn------Ne~i 420 (508)
+.-|+.--.-=|...+.+ .+.+|...+ +..+|..||.-|.+||...- ..+-...-.||.+.. .+++
T Consensus 13 E~kVreAT~nd~wGp~~~------~m~eIa~~T~~~~~~~eIm~~l~kRL~d~~-~k~WR~vyKaL~lLeyLl~nGse~v 85 (150)
T 3onk_A 13 EGKVREATNNEPWGASST------LMDQISQGTYNFREREEILSMIFRRFTEKA-GSEWRQIYKALQLLDYLIKHGSERF 85 (150)
T ss_dssp HHHHHHHTSSCSSCCCHH------HHHHHHHHTTSHHHHHHHHHHHHHHHHSCC-STTHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHhCCCCCCcCHH------HHHHHHHHhCCHHHHHHHHHHHHHHHcccc-cchHHHHHHHHHHHHHHHHhCCHHH
Confidence 333444444434455554 456777776 78999999999999988421 135677777776653 3556
Q ss_pred HHHHhhccccccccc-cHHHHhhhcccchHHHHHHHHHHHHHHHh
Q 010510 421 ENLIRQNRKVILPII-FPALEKNGCNHWNQVVQNLTVNVRKIFSE 464 (508)
Q Consensus 421 ~~li~~n~~~IlPii-~paL~~~s~~HWn~~V~~la~~vlk~l~e 464 (508)
+.-+.+|...|=.+- |.-.... -..|-..||..|..++.+|.|
T Consensus 86 v~~~r~~~~~i~~L~~F~~~d~~-G~D~G~~VR~kak~l~~LL~D 129 (150)
T 3onk_A 86 IDDTRNSINLIRILETFHYIDSQ-GRDQGINVRTRVKALIELLSD 129 (150)
T ss_dssp HHHHHTTHHHHHGGGGCCCBCTT-SCBCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhhcccccCCC-CCchHHHHHHHHHHHHHHHcC
Confidence 565555543332210 0011111 246899999999999998875
No 35
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=30.54 E-value=1.3e+02 Score=26.57 Aligned_cols=90 Identities=11% Similarity=0.201 Sum_probs=70.7
Q ss_pred chhHHHHHHHHHHhCcccHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCC---hhHHHhhHHHHHHHHHHHhCCCcH
Q 010510 329 HQPLSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQ---PPEFQKCMVPLFRQIASCLSSSHF 405 (508)
Q Consensus 329 h~qL~yci~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~---~~eF~~i~~pLF~~la~Ci~S~hf 405 (508)
.++...-++.+...+..-+..++..+.+|=-++++.+=+.+|.-+..|+-.+. ...|.+.+.++|...-.++....-
T Consensus 23 Sk~~I~~LT~~a~~~~~~a~~Iv~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~~~~~~~d~~~r 102 (144)
T 1sz9_A 23 SRPIITTLTKLAEENISCAQYFVDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYKRTYLLVDNTTR 102 (144)
T ss_dssp CHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHHHHHHTSCHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 34555666777777788888888888887778899999999999999998764 356888889999998888765555
Q ss_pred HHHHHHHhhhcch
Q 010510 406 QVAERALYLWNND 418 (508)
Q Consensus 406 qVAErAL~lWnNe 418 (508)
+--.|-+..|...
T Consensus 103 ~k~~rL~~~W~~~ 115 (144)
T 1sz9_A 103 TKLINMFKLWLNP 115 (144)
T ss_dssp HHHHHHHHHHTSG
T ss_pred HHHHHHHHHHhCc
Confidence 6677788888755
No 36
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=30.46 E-value=2.4e+02 Score=24.41 Aligned_cols=29 Identities=21% Similarity=0.206 Sum_probs=20.1
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHh
Q 010510 227 SFVLKLLDLFDSEDPREREYLKTILHRIY 255 (508)
Q Consensus 227 ~Fv~~Ll~lfdSeDpRERd~LKtiLHriY 255 (508)
.+...|+.++.|+|+.-|...-..|..+-
T Consensus 12 ~~~~~l~~LL~s~~~~v~~~a~~~L~~l~ 40 (210)
T 4db6_A 12 SELPQMVQQLNSPDQQELQSALRKLSQIA 40 (210)
T ss_dssp -CHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 34456777778888888877777766665
No 37
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=30.10 E-value=6.4e+02 Score=28.44 Aligned_cols=33 Identities=9% Similarity=0.233 Sum_probs=27.0
Q ss_pred HHhhHHHHHHHHHHHhCCCcHHHHHHHHhhhcc
Q 010510 385 FQKCMVPLFRQIASCLSSSHFQVAERALYLWNN 417 (508)
Q Consensus 385 F~~i~~pLF~~la~Ci~S~hfqVAErAL~lWnN 417 (508)
+...+..++..+-+|...++-.|+..|+.+|..
T Consensus 338 ~~~~l~~~l~~ll~~~~~~d~~v~~~~lefw~~ 370 (1049)
T 3m1i_C 338 LRELLLNAHQYLIQLSKIEERELFKTTLDYWHN 370 (1049)
T ss_dssp GHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 444556778888889888899999999999964
No 38
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=29.10 E-value=3.6e+02 Score=26.08 Aligned_cols=125 Identities=15% Similarity=0.168 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhCcccHHHHHHHhhccCCCCCChHHH--HHHHHHHHHHhhCChhHHHhhHHHHHHHHHHHhCCCcHHHHH
Q 010510 332 LSYCITQFVEKDCKLADTVIKGLLKYWPITNSSKEV--MFLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAE 409 (508)
Q Consensus 332 L~yci~qFveKDp~La~~vi~gLLk~WP~tns~KEv--~FL~EleeiLe~~~~~eF~~i~~pLF~~la~Ci~S~hfqVAE 409 (508)
|.+.-..-+.+||.|...++++++-+ .+++.-|| .-.+.|+|+... .++-..+ +..-|..-++.....|..
T Consensus 36 L~qa~el~~~~dp~ll~~~l~~il~~--~~~~~~~vrk~~~~Fi~e~~~~-k~~l~~~----~l~~L~~Ll~d~d~~V~K 108 (257)
T 3gs3_A 36 LAKVQETVLGSCAELAEEFLESVLSL--AHDSNMEVRKQVVAFVEQVCKV-KVELLPH----VINVVSMLLRDNSAQVIK 108 (257)
T ss_dssp HHHHHHHHTTTTGGGHHHHHHHHHGG--GGCSCHHHHHHHHHHHHHHHHH-CGGGHHH----HHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHccCHhHHHHHHHHHHHh--ccCChHHHHHHHHHHHHHHHHH-HHHHHHH----HHHHHHHHHcCCCHHHHH
Confidence 43444445678999999999999987 33333332 223444444421 2222222 223333333455555665
Q ss_pred HHHhhhcchhHHHHHhhccccccccccHHHHhhhc------ccchHHHHHHHHHHHHHHHhhCHHHHHHHHHHHH
Q 010510 410 RALYLWNNDHIENLIRQNRKVILPIIFPALEKNGC------NHWNQVVQNLTVNVRKIFSEIDPELFDECLQKFK 478 (508)
Q Consensus 410 rAL~lWnNe~i~~li~~n~~~IlPii~paL~~~s~------~HWn~~V~~la~~vlk~l~e~D~~lf~~~~~~~~ 478 (508)
+|+.. ...|||.+|--+..+.. ..|+. +..+-..++.++. -++.--.-|.-+|-
T Consensus 109 ~~I~~-------------~~~iY~~~l~~i~~~~~~~~~~~~~W~~-m~~lK~~Il~~~~-s~n~gvkl~~iKF~ 168 (257)
T 3gs3_A 109 RVIQA-------------CGSIYKNGLQYLCSLMEPGDSAEQAWNI-LSLIKAQILDMID-NENDGIRTNAIKFL 168 (257)
T ss_dssp HHHHH-------------HHHHHHHHHHHHTTSSSCCHHHHHHHHH-HHHHHHHHHHGGG-SSCHHHHHHHHHHH
T ss_pred HHHHH-------------HHHHHHHHHHHHhcCCCCcchHHHHHHH-HHHHHHHHHHHHc-cCCcchHHHHHHHH
Confidence 55543 45567777777666543 56764 3445555555533 23333333333443
No 39
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=28.53 E-value=4.6e+02 Score=26.29 Aligned_cols=69 Identities=13% Similarity=0.071 Sum_probs=43.3
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHhhhcchhHHHHHhhcc-ccccccccHHHHhhhcccchHHHHHHHHHHHHHHHhh
Q 010510 391 PLFRQIASCLSSSHFQVAERALYLWNNDHIENLIRQNR-KVILPIIFPALEKNGCNHWNQVVQNLTVNVRKIFSEI 465 (508)
Q Consensus 391 pLF~~la~Ci~S~hfqVAErAL~lWnNe~i~~li~~n~-~~IlPii~paL~~~s~~HWn~~V~~la~~vlk~l~e~ 465 (508)
.+...+..++..++..|-..|+..+ -.+..... ....+.++|.|...... =+..||..|..++..+.+.
T Consensus 164 ~l~~~l~~l~~d~~~~VR~~a~~~l-----~~l~~~~~~~~~~~~l~~~l~~~~~d-~~~~vr~~a~~~l~~l~~~ 233 (588)
T 1b3u_A 164 ELRQYFRNLCSDDTPMVRRAAASKL-----GEFAKVLELDNVKSEIIPMFSNLASD-EQDSVRLLAVEACVNIAQL 233 (588)
T ss_dssp HHHHHHHHHHTCSCHHHHHHHHHHH-----HHHHHTSCHHHHHHTHHHHHHHHHTC-SCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH-----HHHHHHhcHHhHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHh
Confidence 3444455556777788877777654 23444332 24456778888766543 3678888888777766654
No 40
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=28.25 E-value=4.5e+02 Score=29.72 Aligned_cols=107 Identities=13% Similarity=0.127 Sum_probs=53.9
Q ss_pred CcHHHHHHHHHHHhhcCCCCCC--------ccccchhHHHHHHHHHHh-----CcccHHHHHHHhhccCCCCCC-hHH--
Q 010510 303 PLKEEHKLFLIRALIPLHKPKC--------LAMYHQPLSYCITQFVEK-----DCKLADTVIKGLLKYWPITNS-SKE-- 366 (508)
Q Consensus 303 PLKeEHk~Fl~rvLiPLHk~~~--------~~~yh~qL~yci~qFveK-----Dp~La~~vi~gLLk~WP~tns-~KE-- 366 (508)
.|.+|.+..++..|+.+..... -.....+|+.|+...+.. -|.+...++..+ - ++. .+|
T Consensus 83 ~l~~~~~~~ir~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~Wp~ll~~L~~~~----~-~~~~~~~~~ 157 (1049)
T 3m1i_C 83 LLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWPEFIPELIGSS----S-SSVNVCENN 157 (1049)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHH----T-TCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCcccchHHHHHHHHHH----c-cChHHHHHH
Confidence 4567777777777776644321 123456677777765444 344444443332 1 222 244
Q ss_pred HHHHHHHHHHHhhCCh------------hHHHhhHHHHHHHHHHHhCC-CcHHHHHHHHhh
Q 010510 367 VMFLSELEEVLEATQP------------PEFQKCMVPLFRQIASCLSS-SHFQVAERALYL 414 (508)
Q Consensus 367 v~FL~EleeiLe~~~~------------~eF~~i~~pLF~~la~Ci~S-~hfqVAErAL~l 414 (508)
..+|.-|-|.+..... +.|..-...+|..+..|+.+ .+..|...||..
T Consensus 158 l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~ 218 (1049)
T 3m1i_C 158 MIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLES 218 (1049)
T ss_dssp HHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2233333322221111 33455566677777888764 345566665543
No 41
>4b8b_A General negative regulator of transcription subun; 2.80A {Saccharomyces cerevisiae S288C}
Probab=26.67 E-value=2.1e+02 Score=31.39 Aligned_cols=52 Identities=27% Similarity=0.349 Sum_probs=36.5
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHhhhcccCCcChHHH---HHHHHHHHhc
Q 010510 228 FVLKLLDLFDSEDPREREYLKTILHRIYGKFMVHRPFIRKAINNIFFRFIFETEKHNGIAEL---LEVLGSIING 299 (508)
Q Consensus 228 Fv~~Ll~lfdSeDpRERd~LKtiLHriYgKf~~~R~fIRk~Innif~~fiyEte~~nGIaEL---LeIlgSIInG 299 (508)
+|..|-.+=+|.|+||+|.-..++|.++.. |+|+.+ ++ ..|| =.++|++|.-
T Consensus 468 iV~~L~~~K~S~~~rdqdvFaCMIh~LFdE----------------yrff~~--YP--~~eL~iTA~LFG~LI~~ 522 (603)
T 4b8b_A 468 VIELLRRLRDSDLPRDQEVFTCITHAVIAE----------------STFFQD--YP--LDALATTSVLFGSMILF 522 (603)
T ss_dssp HHHHHHHHHTCCSHHHHHHHHHHHHHHHHH----------------GGGGGG--SC--HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcCCChhHHHHHHHHHHHHHHH----------------HHHHhh--CC--HHHHHHHHHHHHHHHHH
Confidence 445555566799999999999999998875 555543 22 3344 4678999853
No 42
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=26.06 E-value=83 Score=28.13 Aligned_cols=94 Identities=12% Similarity=0.174 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhCChhHHHhhHHHHHHHHHHHhCCCcHHHHHHHHhhhc------chhHHHHHhhccccccccc-cHHHHh
Q 010510 369 FLSELEEVLEATQPPEFQKCMVPLFRQIASCLSSSHFQVAERALYLWN------NDHIENLIRQNRKVILPII-FPALEK 441 (508)
Q Consensus 369 FL~EleeiLe~~~~~eF~~i~~pLF~~la~Ci~S~hfqVAErAL~lWn------Ne~i~~li~~n~~~IlPii-~paL~~ 441 (508)
.++||..+.-.-..+.|+.+|.-|++||.. .|+| |--.||.+.. ++.|+.-+..|...|=-.. |-....
T Consensus 31 lm~EIA~~T~~s~~~~~~eim~~L~kRL~~--k~~~--vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~d 106 (140)
T 1vdy_A 31 KLEEICDLLRSSHVSIVKEFSEFILKRLDN--KSPI--VKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPD 106 (140)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHTS--SSHH--HHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCC
T ss_pred HHHHHHHHHHhcchhHHHHHHHHHHHHhcC--CCcc--eeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCC
Confidence 355666655444445568899889988876 3444 6677776654 5788888888865432211 111111
Q ss_pred hh-cccchHHHHHHHHHHHHHHHhhC
Q 010510 442 NG-CNHWNQVVQNLTVNVRKIFSEID 466 (508)
Q Consensus 442 ~s-~~HWn~~V~~la~~vlk~l~e~D 466 (508)
-. -.-.++.||..|..++.++.+-+
T Consensus 107 p~~G~d~g~~VR~~AkEl~~ll~d~~ 132 (140)
T 1vdy_A 107 PLKGDALNKAVRETAHETISAIFSEE 132 (140)
T ss_dssp TTTSSCHHHHHHHHHHHHHHHHTCCS
T ss_pred cccccchhHHHHHHHHHHHHHHhCcC
Confidence 01 13567899999999999887644
No 43
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=24.12 E-value=89 Score=35.89 Aligned_cols=82 Identities=16% Similarity=0.171 Sum_probs=54.8
Q ss_pred HHHHhhcCCCCChhHHHHHHHHHHHHhccccC-ChHHHHHHHHHHHHHhhhcccCCcChHHHHHHHHHHHhccCCCcHHH
Q 010510 229 VLKLLDLFDSEDPREREYLKTILHRIYGKFMV-HRPFIRKAINNIFFRFIFETEKHNGIAELLEVLGSIINGFALPLKEE 307 (508)
Q Consensus 229 v~~Ll~lfdSeDpRERd~LKtiLHriYgKf~~-~R~fIRk~Innif~~fiyEte~~nGIaELLeIlgSIInGFa~PLKeE 307 (508)
+++.++.|. .+.+=||.....+||+.+.+.. .-|++-+.|..+. ..-...+.++.|.++|.+|..|.- +
T Consensus 704 il~~l~~~~-~~~~irea~~~~~~r~i~~lg~~~~p~lp~~i~~ll-----~~~~~~e~~~fL~l~~qli~~f~~----~ 773 (980)
T 3ibv_A 704 IFLILDRMG-FNEDIRGAVRFTSGRIINVVGPDMLPKVPQLISILL-----NSIDMNELVDVLSFISQLIHIYKD----N 773 (980)
T ss_dssp HHHHHHHSC-CSHHHHHHHHHHHHHHTTTTHHHHTTTHHHHHHHHH-----HHCCTTTHHHHHHHHHHHHHHTTT----T
T ss_pred HHHHHHhcC-CcHHHHHHHHHHHHHHHHHccHhHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHHHH----H
Confidence 345555555 5566777789999999985533 3455555554444 222467899999999999999954 3
Q ss_pred HHHHHHHHhhcCC
Q 010510 308 HKLFLIRALIPLH 320 (508)
Q Consensus 308 Hk~Fl~rvLiPLH 320 (508)
+..+|...|-||.
T Consensus 774 ~~~~l~~ll~~l~ 786 (980)
T 3ibv_A 774 MMEITNRMLPTLL 786 (980)
T ss_dssp SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5566666665543
No 44
>1oks_A RNA polymerase alpha subunit; transferase, RNA-directed RNA polymerase, nucleocapsid, phosphorylation.; HET: NHE; 1.8A {Measles virus} SCOP: a.8.5.1 PDB: 1t6o_A 2k9d_A
Probab=23.48 E-value=38 Score=25.78 Aligned_cols=45 Identities=33% Similarity=0.414 Sum_probs=35.3
Q ss_pred HHHHHHHhccCCCcHHHHHHHHHHHhhcCCCCCCccccchhHHHHHH
Q 010510 291 EVLGSIINGFALPLKEEHKLFLIRALIPLHKPKCLAMYHQPLSYCIT 337 (508)
Q Consensus 291 eIlgSIInGFa~PLKeEHk~Fl~rvLiPLHk~~~~~~yh~qL~yci~ 337 (508)
+++.|||+.- -|.++||.++...|=-.-..+.++.|||-|.-.|.
T Consensus 5 sViRSvikSS--~l~~~hK~~ml~LL~dikg~~dL~eF~qMl~~I~~ 49 (56)
T 1oks_A 5 SVIRSIIKSS--RLEEDRKRYLMTLLDDIKGANDLAKFHQMLVKIIM 49 (56)
T ss_dssp HHHHHHHHHS--CSCHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc--ccchHHHHHHHHHHHHccccchHHHHHHHHHHHHH
Confidence 4677888765 47899999999988888888889999986654443
No 45
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=22.73 E-value=1.7e+02 Score=24.88 Aligned_cols=80 Identities=11% Similarity=0.220 Sum_probs=54.4
Q ss_pred HHHHHHHhCcccHHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCC---hhHH----HhhHHHHHHHHHHHhCCCcHHH
Q 010510 335 CITQFVEKDCKLADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQ---PPEF----QKCMVPLFRQIASCLSSSHFQV 407 (508)
Q Consensus 335 ci~qFveKDp~La~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~---~~eF----~~i~~pLF~~la~Ci~S~hfqV 407 (508)
=+++++-...+-+..++..+.++=-.+.+.+-+-+|.-+.+|+-... ..+| +++++.+|..++ +..+-+-
T Consensus 26 ~~s~w~l~h~~~a~~Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns~~~~~~~f~~~f~~~l~~~~~~~~---~~~~~~k 102 (132)
T 4flb_A 26 GLSSWCIENKKHHSTIVYHWMKWLRRSAYPHRLNLFYLANDVIQNCKRKNAIIFRESFADVLPEAAALVK---DPSVSKS 102 (132)
T ss_dssp HHHHHHHHTGGGHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTTTCTHHHHHHHTTHHHHHHTTC---STTTHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHHHhC---CHHHHHH
Confidence 34455555566677777777777667888888999999999998652 2344 445555554332 4456677
Q ss_pred HHHHHhhhcc
Q 010510 408 AERALYLWNN 417 (508)
Q Consensus 408 AErAL~lWnN 417 (508)
..|-+.+|..
T Consensus 103 l~~ll~iW~~ 112 (132)
T 4flb_A 103 VERIFKIWED 112 (132)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 7889999975
No 46
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=20.42 E-value=5.6e+02 Score=27.35 Aligned_cols=84 Identities=14% Similarity=0.205 Sum_probs=51.7
Q ss_pred cchhHH----HHHHHHHH---hCccc-HHHHHHHhhccCCCCCChHHHHHHHHHHHHHhhCChhHHHhhHHHHHHHHHHH
Q 010510 328 YHQPLS----YCITQFVE---KDCKL-ADTVIKGLLKYWPITNSSKEVMFLSELEEVLEATQPPEFQKCMVPLFRQIASC 399 (508)
Q Consensus 328 yh~qL~----yci~qFve---KDp~L-a~~vi~gLLk~WP~tns~KEv~FL~EleeiLe~~~~~eF~~i~~pLF~~la~C 399 (508)
.+..+. +|+-+|.+ ..+.. ...+++.+.+..+..++.=+...|.=+-.+.-.. |+ .+ ..+-..+..|
T Consensus 492 ~~~~li~~~~wilGEy~~~~~~~~~~~p~~~l~~l~~~~~~~~~~v~~~~Lta~~Kl~~~~-p~-~~---~~i~~~l~~~ 566 (621)
T 2vgl_A 492 CHENLVKVGGYILGEFGNLIAGDPRSSPLIQFNLLHSKFHLCSVPTRALLLSTYIKFVNLF-PE-VK---ATIQDVLRSD 566 (621)
T ss_dssp CCHHHHHHHHHHHHHHTHHHHSSTTSCHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHC-GG-GH---HHHHHHHSSH
T ss_pred chHHHHHHHHHHhcchHHHhcccCCCCHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHC-hH-HH---HHHHHHHHHH
Confidence 345566 88888854 22322 3467778877777666555555565555554433 22 12 2233444556
Q ss_pred hC--CCcHHHHHHHHhhhc
Q 010510 400 LS--SSHFQVAERALYLWN 416 (508)
Q Consensus 400 i~--S~hfqVAErAL~lWn 416 (508)
.. |.+..|=+||..+|.
T Consensus 567 ~~~~~~d~evrdRA~~y~~ 585 (621)
T 2vgl_A 567 SQLKNADVELQQRAVEYLR 585 (621)
T ss_dssp HHHSCSSHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHHH
Confidence 66 999999999999874
Done!