BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010514
(508 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ELK|A Chain A, Solution Structure Of The Sant Domain Of Fission Yeast
Spcc24b10.08c Protein
Length = 58
Score = 53.1 bits (126), Expect = 4e-07, Method: Composition-based stats.
Identities = 20/47 (42%), Positives = 33/47 (70%), Gaps = 1/47 (2%)
Query: 48 DWNADEEILLLEGIEMYGFGNWGEVSEHVG-TKSKSQCIDHYNAIYM 93
+W ADEE+LL++ E G GNW +++++VG ++K +C DHY Y+
Sbjct: 11 NWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYI 57
>pdb|2CUJ|A Chain A, Solution Structure Of Swirm Domain Of Mouse
Transcriptional Adaptor 2-Like
Length = 108
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 44/78 (56%)
Query: 427 SLEDWDISGFVGADLLSETEKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLF 486
S +++G G + L+E EK LC ++++P YL+ L E +K + + A L
Sbjct: 26 SAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALI 85
Query: 487 KVEPNKVDRVYDMLVRKG 504
K++ NK ++YD L+R+G
Sbjct: 86 KIDVNKTRKIYDFLIREG 103
>pdb|2AQE|A Chain A, Structural And Functional Analysis Of Ada2 Alpha Swirm
Domain
pdb|2AQF|A Chain A, Structural And Functional Analysis Of Ada2 Alpha Swirm
Domain
Length = 90
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/73 (32%), Positives = 43/73 (58%)
Query: 432 DISGFVGADLLSETEKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPN 491
+++G G + L+E EK LC ++++P YL+ L E +K + + A L K++ N
Sbjct: 13 NLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVN 72
Query: 492 KVDRVYDMLVRKG 504
K ++YD L+R+G
Sbjct: 73 KTRKIYDFLIREG 85
>pdb|1X41|A Chain A, Solution Structure Of The Myb-Like Dna Binding Domain Of
Human Transcriptional Adaptor 2-Like, Isoform B
Length = 60
Score = 48.5 bits (114), Expect = 8e-06, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 47 PDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHY 88
P W A EE+ LLE + GFGNW +V+ + TK+K +C HY
Sbjct: 9 PSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHY 50
>pdb|2ELJ|A Chain A, Solution Structure Of The Swirm Domain Of Baker's Yeast
Transcriptional Adapter 2
Length = 88
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 26/62 (41%), Positives = 39/62 (62%), Gaps = 3/62 (4%)
Query: 441 LLSETEKRLCGEIKILPAHYLKMLEILSVEIYK--GNVSKKSDAHNLFKVEPNKVDRVYD 498
LLS E++LC ++KILP YL + E++ E+ K GN+S KS L ++P K +R+YD
Sbjct: 22 LLSNDEQQLCIQLKILPKPYLVLKEVMFRELLKTGGNLS-KSACRELLNIDPIKANRIYD 80
Query: 499 ML 500
Sbjct: 81 FF 82
>pdb|2YUS|A Chain A, Solution Structure Of The Sant Domain Of Human SwiSNF-
Related Matrix-Associated Actin-Dependent Regulator Of
Chromatin Subfamily C Member 1
Length = 79
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 18/21 (85%)
Query: 68 NWGEVSEHVGTKSKSQCIDHY 88
+W +VSEHVG++++ +CI H+
Sbjct: 39 DWNKVSEHVGSRTQDECILHF 59
>pdb|1TOT|A Chain A, Zz Domain Of Cbp- A Novel Fold For A Protein Interaction
Module
Length = 52
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 8/24 (33%), Positives = 15/24 (62%)
Query: 3 RIKCAMCSDFDLCVECFSVGAQIY 26
R C +C D+DLC+ C++ + +
Sbjct: 19 RWHCTVCEDYDLCINCYNTKSHTH 42
>pdb|1F61|A Chain A, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F61|B Chain B, Crystal Structure Of Isocitrate Lyase From Mycobacterium
Tuberculosis
pdb|1F8M|A Chain A, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|B Chain B, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|C Chain C, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
pdb|1F8M|D Chain D, Crystal Structure Of 3-Bromopyruvate Modified Isocitrate
Lyase (Icl) From Mycobacterium Tuberculosis
Length = 429
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 73/166 (43%), Gaps = 25/166 (15%)
Query: 304 EEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKR--------IQELQEAQAAGCRTS 355
+E + ++K R +S ED L SV+EEH + +R + +L+ A G T
Sbjct: 16 QEWDTNPRWKDVTRTYSAEDVVALQGSVVEEHTLARRGAEVLWEQLHDLEWVNALGALTG 75
Query: 356 SEAHRFLEQKRK--KEAEENGQRVKESGQAGPSGKVLQRPN-SLKEVEVSPRGVVRGSTS 412
+ A ++Q R K +G +V +G A SG P+ SL P+ V R + +
Sbjct: 76 NMA---VQQVRAGLKAIYLSGWQV--AGDANLSGHTY--PDQSLYPANSVPQVVRRINNA 128
Query: 413 LQPFGNDSYSTIASSLEDWDI-------SGFVGADLLSETEKRLCG 451
LQ + +S+E+W +GF GA + E +K L
Sbjct: 129 LQRADQIAKIEGDTSVENWLAPIVADGEAGFGGALNVYELQKALIA 174
>pdb|1F8I|A Chain A, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|B Chain B, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|C Chain C, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
pdb|1F8I|D Chain D, Crystal Structure Of Isocitrate
Lyase:nitropropionate:glyoxylate Complex From
Mycobacterium Tuberculosis
Length = 429
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 25/165 (15%)
Query: 304 EEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKR--------IQELQEAQAAGCRTS 355
+E + ++K R +S ED L SV+EEH + +R + +L+ A G T
Sbjct: 16 QEWDTNPRWKDVTRTYSAEDVVALQGSVVEEHTLARRGAEVLWEQLHDLEWVNALGALTG 75
Query: 356 SEAHRFLEQKRK--KEAEENGQRVKESGQAGPSGKVLQRPN-SLKEVEVSPRGVVRGSTS 412
+ A ++Q R K +G +V +G A SG P+ SL P+ V R + +
Sbjct: 76 NMA---VQQVRAGLKAIYLSGWQV--AGDANLSGHTY--PDQSLYPANSVPQVVRRINNA 128
Query: 413 LQPFGNDSYSTIASSLEDWDI-------SGFVGADLLSETEKRLC 450
LQ + +S+E+W +GF GA + E +K L
Sbjct: 129 LQRADQIAKIEGDTSVENWLAPIVADGEAGFGGALNVYELQKALI 173
>pdb|4B4C|A Chain A, Crystal Structure Of The Dna-Binding Domain Of Human Chd1
Length = 211
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 48 DWNADEEILLLEGIEMYGFGNW 69
DW +++ LL GI YG+G+W
Sbjct: 136 DWGKEDDSNLLIGIYEYGYGSW 157
>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3
Length = 128
Score = 28.5 bits (62), Expect = 9.4, Method: Composition-based stats.
Identities = 9/41 (21%), Positives = 24/41 (58%)
Query: 49 WNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYN 89
W +E+ ++E ++ YG W ++++H+ + QC + ++
Sbjct: 30 WTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWH 70
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,795,759
Number of Sequences: 62578
Number of extensions: 619203
Number of successful extensions: 1202
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1179
Number of HSP's gapped (non-prelim): 35
length of query: 508
length of database: 14,973,337
effective HSP length: 103
effective length of query: 405
effective length of database: 8,527,803
effective search space: 3453760215
effective search space used: 3453760215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)