BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010514
(508 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q75LL6|TADA2_ORYSJ Transcriptional adapter ADA2 OS=Oryza sativa subsp. japonica
GN=ADA2 PE=2 SV=2
Length = 567
Score = 592 bits (1527), Expect = e-168, Method: Compositional matrix adjust.
Identities = 298/507 (58%), Positives = 370/507 (72%), Gaps = 18/507 (3%)
Query: 2 VRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEGI 61
+RIKC+ C DFDLCVECFSVGA++ PH SNHPYRVMDNLSFPLICPDWNADEEILLLEGI
Sbjct: 64 IRIKCSKCPDFDLCVECFSVGAEVTPHRSNHPYRVMDNLSFPLICPDWNADEEILLLEGI 123
Query: 62 EMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNSPCFPLPDLSHVMGKNREELLAMAKEH 121
EMYG GNW EV+EHVGTK+K+QCIDHY YMNSPC+PLPD+SHV GKNR+ELLAMAK
Sbjct: 124 EMYGLGNWAEVAEHVGTKTKAQCIDHYTTAYMNSPCYPLPDMSHVNGKNRKELLAMAKVQ 183
Query: 122 QQVKKELPTVAELALKEDAPFSTRMKPETRKEDTTRQSSSGLTTVEVNSIDPSNGNAFSF 181
+ KK LP +L K+++PFS P + ED + +G + PS+ +
Sbjct: 184 GESKKVLP--GDLTPKDESPFSP---PRVKVEDALGEGLAGRS--------PSHIAGGAN 230
Query: 182 KKASNMTQVKESVKVEVLAEPQSDRSIGEKKLRTSGDERPSMKELSGYNFKRQEFEIEYD 241
KKASN+ Q K+ V + + DRSIG KK R S DE PS+ ELSGYN KR EF+ EYD
Sbjct: 231 KKASNVGQFKDGANVAKVEDGHVDRSIGVKKPRYSADEGPSLTELSGYNSKRHEFDPEYD 290
Query: 242 NDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRKDFILERNLLFPDPFERNL 301
NDAE LA+MEF + D++ +RELKLRVLRIY RLDERKRRK+FILERNLLFP+P E++L
Sbjct: 291 NDAEQALAEMEFKETDSETDRELKLRVLRIYLSRLDERKRRKEFILERNLLFPNPLEKDL 350
Query: 302 SPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKRIQELQEAQAAGCRTSSEAHRF 361
+ E++E+Y +YKVFMRF SKE+HE L++SV+EE +I +RIQELQE ++AGCRT +EA
Sbjct: 351 TNEDKEVYHRYKVFMRFLSKEEHEALVRSVLEERKIRRRIQELQECRSAGCRTLAEAKIH 410
Query: 362 LEQKRKKEAEENGQRVKESGQAGPSGKVLQRPNSLKEVEVSPR-GVVRGSTSLQPFGNDS 420
+EQKRKKE E N Q+ KESGQ + KV+ + N ++E +G SL G DS
Sbjct: 411 IEQKRKKEHEVNAQKAKESGQLLSNTKVVHKTNRPMKIESDGNLDQKKGGASLDSTGRDS 470
Query: 421 YSTIASS----LEDWDISGFVGADLLSETEKRLCGEIKILPAHYLKMLEILSVEIYKGNV 476
T + +DWDI GF GA+LLS +EK LC + ++LP HYLKM E+L EI+KG+V
Sbjct: 471 PKTTGHAGTKHWDDWDIVGFPGAELLSTSEKNLCCQNRLLPNHYLKMQEVLMQEIFKGSV 530
Query: 477 SKKSDAHNLFKVEPNKVDRVYDMLVRK 503
+KK DAH LFKV+P KVD VYDM+ +K
Sbjct: 531 AKKEDAHVLFKVDPAKVDNVYDMVTKK 557
>sp|Q9SFD5|TAD2A_ARATH Transcriptional adapter ADA2a OS=Arabidopsis thaliana GN=ADA2A PE=1
SV=1
Length = 548
Score = 573 bits (1477), Expect = e-163, Method: Compositional matrix adjust.
Identities = 297/514 (57%), Positives = 380/514 (73%), Gaps = 35/514 (6%)
Query: 1 MVRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEG 60
+VR KCA+C DFDLCVECFSVG ++ H+++HPYRVMDNLSF L+ DWNADEEILLLE
Sbjct: 63 LVRFKCAVCMDFDLCVECFSVGVELNRHKNSHPYRVMDNLSFSLVTSDWNADEEILLLEA 122
Query: 61 IEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNSPCFPLPDLSHVMGKNREELLAMAKE 120
I YGFGNW EV++HVG+K+ ++CI H+N+ YM SPCFPLPDLSH +GK+++ELLAM+K+
Sbjct: 123 IATYGFGNWKEVADHVGSKTTTECIKHFNSAYMQSPCFPLPDLSHTIGKSKDELLAMSKD 182
Query: 121 HQQVKKELPTVAELALKEDAPFSTRMKPETRKEDTTRQSSSGLTTVEVNSIDPSNGNAFS 180
VK E+P L+ KE+ P S +K E +SG +VN IDP
Sbjct: 183 -SAVKTEIPAFVRLSPKEELPVSAEIKHE----------ASG----KVNEIDPPLSALAG 227
Query: 181 FKKASNMTQVKESVKVEVLAEPQSDRSIGEKKLRTSGDERPSMKELSGYNFKRQEFEIEY 240
KK N+ Q K+ +K+E A+ QSDRS+GEKKLR G++ P + EL GYN KR+EFEIE+
Sbjct: 228 VKKKGNVPQAKDIIKLEA-AKQQSDRSVGEKKLRLPGEKVPLVTELYGYNLKREEFEIEH 286
Query: 241 DNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRKDFILERNLLFPDPFERN 300
DNDAE LLADMEF +DTDAERE KL+VLRIY KRLDERKRRK+F+LERNLL+PD +E +
Sbjct: 287 DNDAEQLLADMEFKDSDTDAEREQKLQVLRIYSKRLDERKRRKEFVLERNLLYPDQYEMS 346
Query: 301 LSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKRIQELQEAQAAGCRTSSEAHR 360
LS EER+IY+ KVF RF SKE+H+EL+K VIEEH+I++RI++LQEA+ AGCRT+S+A+R
Sbjct: 347 LSAEERKIYKSCKVFARFQSKEEHKELIKKVIEEHQILRRIEDLQEARTAGCRTTSDANR 406
Query: 361 FLEQKRKKEAEENG-QRVKESGQAGPSGKVLQRPNSLKEVEVSPRGVVRGSTSLQPFGND 419
F+E+KRKKEAEE+ R+ +GK L+ SPRG+ R +L PFG+D
Sbjct: 407 FIEEKRKKEAEESMLLRLNHGAPGSIAGKTLK----------SPRGLPR---NLHPFGSD 453
Query: 420 SYSTIA-----SSLEDWDISGFVGADLLSETEKRLCGEIKILPAHYLKMLEILSVEIYKG 474
S + S L+ WD+ G +GADLLSETEK++C E +ILP HYLKML+IL+ EI KG
Sbjct: 454 SLPKVTPPRIYSGLDTWDVDGLLGADLLSETEKKMCNETRILPVHYLKMLDILTREIKKG 513
Query: 475 NVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQA 508
+ KKSDA++ FKVEP+KVDRVYDMLV KGI +
Sbjct: 514 QIKKKSDAYSFFKVEPSKVDRVYDMLVHKGIGDS 547
>sp|Q9ATB4|TAD2B_ARATH Transcriptional adapter ADA2b OS=Arabidopsis thaliana GN=ADA2B PE=1
SV=1
Length = 487
Score = 514 bits (1324), Expect = e-145, Method: Compositional matrix adjust.
Identities = 271/508 (53%), Positives = 351/508 (69%), Gaps = 81/508 (15%)
Query: 2 VRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEGI 61
+RIKCA+C DFDLC+EC SVGA+I PH+ +HPYRVM NL+FPLICPDW+AD+E+LLLEG+
Sbjct: 58 IRIKCAVCPDFDLCIECMSVGAEITPHKCDHPYRVMGNLTFPLICPDWSADDEMLLLEGL 117
Query: 62 EMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNSPCFPLPDLSHVMGKNREELLAMAKEH 121
E+YG GNW EV+EHVGTKSK QC++HY IY+NSP FPLPD+SHV GKNR+EL AMAK
Sbjct: 118 EIYGLGNWAEVAEHVGTKSKEQCLEHYRNIYLNSPFFPLPDMSHVAGKNRKELQAMAKGR 177
Query: 122 QQVKKELPTVAELALKEDAPFSTRMKPETRKEDTTRQSSSGLTTVEVNSIDPSNGNAFSF 181
KK AE +KE+ PFS P+ + EDT ++S
Sbjct: 178 IDDKK-----AEQNMKEEYPFSP---PKVKVEDTQKESFV-------------------- 209
Query: 182 KKASNMTQVKESVKVEVLAEPQSDRSIGEKK-LRTSGDERPSMKELSGYNFKRQEFEIEY 240
DRS G KK + TS + S+ ELS YN KR+EF+ EY
Sbjct: 210 -----------------------DRSFGGKKPVSTSVNN--SLVELSNYNQKREEFDPEY 244
Query: 241 DNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRKDFILERNLLFPDPFERN 300
DNDAE LLA+MEF +NDT E ELKLRVLRIY KRLDERKRRK+FI+ERNLL+P+PFE++
Sbjct: 245 DNDAEQLLAEMEFKENDTPEEHELKLRVLRIYSKRLDERKRRKEFIIERNLLYPNPFEKD 304
Query: 301 LSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKRIQELQEAQAAGCRTSSEAHR 360
LS EE+ ++ VFMRFHSKE+H+ELL++V+ E+R+VKR+++L+EAQ AGCR+++EA R
Sbjct: 305 LSQEEKVQCRRLDVFMRFHSKEEHDELLRNVVSEYRMVKRLKDLKEAQVAGCRSTAEAER 364
Query: 361 FLEQKRKKEAEENGQRVKESGQAGP-SGKVLQRPNSLKEVEVSPRGVVRGSTSLQPFGND 419
+L +KRK+E EE R KESGQ G +G++ RP V+ S+S
Sbjct: 365 YLGRKRKRENEEGMNRGKESGQFGQIAGEMGSRP------------PVQASSSY------ 406
Query: 420 SYSTIASSLEDWDISGFVGADLLSETEKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKK 479
+ D D+ GF + LLSE+EKRLC E+K++P YL+M +++S EI+KGNV+KK
Sbjct: 407 --------VNDLDLIGFTESQLLSESEKRLCSEVKLVPPVYLQMQQVMSHEIFKGNVTKK 458
Query: 480 SDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507
SDA++LFK++P KVDRVYDMLV+KGIAQ
Sbjct: 459 SDAYSLFKIDPTKVDRVYDMLVKKGIAQ 486
>sp|Q02336|ADA2_YEAST Transcriptional adapter 2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=ADA2 PE=1 SV=1
Length = 434
Score = 123 bits (308), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 82/128 (64%)
Query: 2 VRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEGI 61
VR+ CA+C ++DLCV CFS G+ H H YR+++ S+P++CPDW ADEE+ L++G
Sbjct: 18 VRVSCAICPEYDLCVPCFSQGSYTGKHRPYHDYRIIETNSYPILCPDWGADEELQLIKGA 77
Query: 62 EMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNSPCFPLPDLSHVMGKNREELLAMAKEH 121
+ G GNW ++++H+G++ K + +HY Y+ S +P+PD++ + ++E L +
Sbjct: 78 QTLGLGNWQDIADHIGSRGKEEVKEHYLKYYLESKYYPIPDITQNIHVPQDEFLEQRRHR 137
Query: 122 QQVKKELP 129
+ +E P
Sbjct: 138 IESFRERP 145
Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 91/286 (31%), Positives = 137/286 (47%), Gaps = 20/286 (6%)
Query: 221 PSMKELSGYNFKRQEFEIEYDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERK 280
PS E+ G+ R EFE E++N+AE + DM F +D + ELK +L IY RL R
Sbjct: 157 PSCHEVQGFMPGRLEFETEFENEAEGPVKDMVFEPDDQPLDIELKFAILDIYNSRLTTRA 216
Query: 281 RRKDFILERNLL---FPDPFERNLSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRI 337
+K + E +L+ ++ S E +E+Y + K F R + +D EE K ++EE
Sbjct: 217 EKKRLLFENHLMDYRKLQAIDKKRSKEAKELYNRIKPFARVMTAQDFEEFSKDILEELHC 276
Query: 338 VKRIQELQEAQAAGCRTSSEAHRFLEQKRKKEAEENGQRVKESGQAGPSGKV-LQRPNSL 396
RIQ+LQE ++ G T L+ +R K+A R+ + G S L NS
Sbjct: 277 RARIQQLQEWRSNGLTTLEAG---LKYERDKQA-----RISSFEKFGASTAASLSEGNSR 328
Query: 397 KEVEVSPRGVVRGSTSLQPFGNDSYSTIASSLEDWDISGFVGADLLSETEKRLCGEIKIL 456
+ R S + G + S DI LLS E++LC ++KIL
Sbjct: 329 YRSNSAHRSNAEYSQNYSENGGRKKNMTIS-----DIQHAPDYALLSNDEQQLCIQLKIL 383
Query: 457 PAHYLKMLEILSVEIYK--GNVSKKSDAHNLFKVEPNKVDRVYDML 500
P YL + E++ E+ K GN+S KS L ++P K +R+YD
Sbjct: 384 PKPYLVLKEVMFRELLKTGGNLS-KSACRELLNIDPIKANRIYDFF 428
>sp|Q9P7J7|ADA2_SCHPO Transcriptional adapter 2 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=ada2 PE=1 SV=1
Length = 437
Score = 115 bits (289), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 43/100 (43%), Positives = 68/100 (68%), Gaps = 1/100 (1%)
Query: 2 VRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEGI 61
+ I+C C DFDLC+ CF+ GA + H +HPYR+++ S+P+ +W ADEE+LL++
Sbjct: 19 IHIRCVECVDFDLCIPCFTSGASLGTHHPSHPYRIIETNSYPIFDENWGADEELLLIDAC 78
Query: 62 EMYGFGNWGEVSEHVG-TKSKSQCIDHYNAIYMNSPCFPL 100
E G GNW +++++VG ++K +C DHY Y+ S C+PL
Sbjct: 79 ETLGLGNWADIADYVGNARTKEECRDHYLKTYIESDCYPL 118
Score = 104 bits (259), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 85/288 (29%), Positives = 136/288 (47%), Gaps = 26/288 (9%)
Query: 221 PSMKELSGYNFKRQEFEIEYDNDAEHLLADMEFNKN---DTDAERELKLRVLRIYGKRLD 277
P E+ GY R EF+ EY N+AE + DM F+ + E +LKL +L IY RL
Sbjct: 158 PQCHEIQGYMPGRLEFDQEYMNEAELPIKDMNFDDDLHESAKHEMQLKLTMLNIYNSRLT 217
Query: 278 ERKRRKDFILERNLLFPDPFERN---LSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEE 334
R RK I NLL + N +S EER + + K F R + D+++ + S E+
Sbjct: 218 RRAVRKQTIFNHNLLDYRRLQANEKRMSKEERNLLNKTKAFARLLTGPDYQKFVNSYHEQ 277
Query: 335 HRIVKRIQELQEAQAAGCRTSSEAHRFLEQKRKKEAEENGQRVKESGQAGPSGKVLQRPN 394
+ K+I +LQE + G T + H++ K Q+ S + K L+
Sbjct: 278 ITLKKQISDLQEWRQMGLTTLEQGHKYERDK--------TQKFLLSKASASYDKQLRHVK 329
Query: 395 SLKEVEVSPRGVVRGSTSLQPFGNDSYSTIASSLEDWDISGFVGADLLSETEKRLCGEIK 454
S + +P V R + P + + ++S + LLSE E+ LC +++
Sbjct: 330 SFNQTTSAPFQV-RDIQKIVPRKPATPTMFSASAD---------RQLLSEDEQALCSKLQ 379
Query: 455 ILPAHYLKM-LEILSVEIYKGNVSKKSDAHNLFK-VEPNKVDRVYDML 500
I P +L + ++S + +K+DA NLFK ++ NKV++VYD
Sbjct: 380 IFPKPFLALKFALISASLTSKKPFQKTDAVNLFKHLDANKVEQVYDFF 427
>sp|Q6AYE3|TAD2A_RAT Transcriptional adapter 2-alpha OS=Rattus norvegicus GN=Tada2a PE=2
SV=1
Length = 443
Score = 108 bits (270), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 142/284 (50%), Gaps = 11/284 (3%)
Query: 224 KELSGYNFKRQEFEIEYDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRK 283
++++GY R +F E+DN AE L D++F ++D+D LK+ V+ IY RL ER+RRK
Sbjct: 163 RDMAGYMPARADFIEEFDNYAEWDLRDIDFVEDDSDILHALKMAVVDIYHSRLKERQRRK 222
Query: 284 DFILERNLLFPDPF---ERNLSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKR 340
I + L+ F ER E +++Y+ + F R +H++ ++S E + +
Sbjct: 223 KIIRDHGLVNLRKFRLMERRYPKEVQDLYETMRRFARIVGPVEHDKFIESHALEFELRRE 282
Query: 341 IQELQEAQAAGCRTSSEAHRFLEQKRKKEAEENGQRVKESGQAGPSGKVLQRPNSLKEVE 400
I+ LQE + AG A + K+ +E E R+K + + +VLQ +
Sbjct: 283 IKRLQEYRTAGITNFCSARTYDHLKKTREEE----RLKRTMLS----EVLQYIQDSSACQ 334
Query: 401 VSPRGVVRGSTSLQPFGNDSYSTIASSLEDWDISGFVGADLLSETEKRLCGEIKILPAHY 460
R + L P + ++ S +++G G + L+E EK LC ++++P Y
Sbjct: 335 QWLRRQADIDSGLSPSVLMASNSGRRSAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAY 394
Query: 461 LKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKG 504
L+ L E +K + + A L K++ NK ++YD L+R+G
Sbjct: 395 LEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIREG 438
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 4 IKCAMCSD--FDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEGI 61
IKCA C F LC++CF+ G + H+S+H Y +M + FP++ P W A EE+ LLE +
Sbjct: 29 IKCAECGPPPFFLCLQCFTRGFEYKKHQSDHTYEIMTS-DFPVLDPSWTAQEEMALLEAV 87
Query: 62 EMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNSPCF 98
GFGNW +V+ + TK+K +C HY ++N+P F
Sbjct: 88 MDCGFGNWQDVANQMCTKTKEECEKHYMKHFINNPLF 124
>sp|Q8CHV6|TAD2A_MOUSE Transcriptional adapter 2-alpha OS=Mus musculus GN=Tada2a PE=1 SV=1
Length = 443
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 142/284 (50%), Gaps = 11/284 (3%)
Query: 224 KELSGYNFKRQEFEIEYDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRK 283
++++GY R +F E+DN AE L D++F ++D+D LK+ V+ IY RL ER+RRK
Sbjct: 163 RDMAGYMPARADFIEEFDNYAEWDLRDIDFVEDDSDILHALKMAVVDIYHSRLKERQRRK 222
Query: 284 DFILERNLLFPDPF---ERNLSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKR 340
I + L+ F ER E +++Y+ + F R +H++ ++S E + +
Sbjct: 223 KIIRDHGLVNLRKFRLMERRYPKEVQDLYETMRRFARIVGPVEHDKFIESHALEFELRRE 282
Query: 341 IQELQEAQAAGCRTSSEAHRFLEQKRKKEAEENGQRVKESGQAGPSGKVLQRPNSLKEVE 400
I+ LQE + AG A + K+ +E E R+K + + +VLQ +
Sbjct: 283 IKRLQEYRTAGITNFCSARTYDHLKKTREEE----RLKRTMLS----EVLQYIQDSSACQ 334
Query: 401 VSPRGVVRGSTSLQPFGNDSYSTIASSLEDWDISGFVGADLLSETEKRLCGEIKILPAHY 460
R + L P + ++ S +++G G + L+E EK LC ++++P Y
Sbjct: 335 QWLRRQADIDSGLSPSVLMASNSGRRSAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAY 394
Query: 461 LKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKG 504
L+ L E +K + + A L K++ NK ++YD L+R+G
Sbjct: 395 LEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIREG 438
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 4 IKCAMCSD--FDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEGI 61
IKCA C F LC++CF+ G + H+S+H Y +M + FP++ P W A EE+ LLE +
Sbjct: 29 IKCAECGPPPFFLCLQCFTRGFEYKKHQSDHTYEIMTS-DFPVLDPSWTAQEEMALLEAV 87
Query: 62 EMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNSPCF 98
GFGNW +V+ + TK+K +C HY ++N+P F
Sbjct: 88 MDCGFGNWQDVANQMCTKTKEECEKHYMKHFINNPLF 124
>sp|O75478|TAD2A_HUMAN Transcriptional adapter 2-alpha OS=Homo sapiens GN=TADA2A PE=1 SV=3
Length = 443
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 143/284 (50%), Gaps = 11/284 (3%)
Query: 224 KELSGYNFKRQEFEIEYDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRK 283
++++GY R +F E+DN AE L D++F ++D+D LK+ V+ IY RL ER+RRK
Sbjct: 163 RDMAGYMPARADFIEEFDNYAEWDLRDIDFVEDDSDILHALKMAVVDIYHSRLKERQRRK 222
Query: 284 DFILERNLLFPDPF---ERNLSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKR 340
I + L+ F ER E +++Y+ + F R +H++ ++S E + +
Sbjct: 223 KIIRDHGLINLRKFQLMERRYPKEVQDLYETMRRFARIVGPVEHDKFIESHALEFELRRE 282
Query: 341 IQELQEAQAAGCRTSSEAHRFLEQKRKKEAEENGQRVKESGQAGPSGKVLQRPNSLKEVE 400
I+ LQE + AG A + K+ +E E R+K + + +Q ++ ++
Sbjct: 283 IKRLQEYRTAGITNFCSARTYDHLKKTREEE----RLKRT-MLSEVLQYIQDSSACQQWL 337
Query: 401 VSPRGVVRGSTSLQPFGNDSYSTIASSLEDWDISGFVGADLLSETEKRLCGEIKILPAHY 460
+ G + P ++S A L +++G G + L+E EK LC ++++P Y
Sbjct: 338 RRQADIDSGLSPSIPMASNSGRRSAPPL---NLTGLPGTEKLNEKEKELCQMVRLVPGAY 394
Query: 461 LKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKG 504
L+ L E K + + A L K++ NK ++YD L+R+G
Sbjct: 395 LEYKSALLNECNKQGGLRLAQARALIKIDVNKTRKIYDFLIREG 438
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 4 IKCAMCSD--FDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEGI 61
IKCA C F LC++CF+ G + H+S+H Y +M + FP++ P W A EE+ LLE +
Sbjct: 29 IKCAECGPPPFFLCLQCFTRGFEYKKHQSDHTYEIMTS-DFPVLDPSWTAQEEMALLEAV 87
Query: 62 EMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNSPCF 98
GFGNW +V+ + TK+K +C HY ++N+P F
Sbjct: 88 MDCGFGNWQDVANQMCTKTKEECEKHYMKHFINNPLF 124
>sp|Q3SZP8|TAD2A_BOVIN Transcriptional adapter 2-alpha OS=Bos taurus GN=TADA2A PE=2 SV=1
Length = 443
Score = 108 bits (269), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 81/284 (28%), Positives = 141/284 (49%), Gaps = 11/284 (3%)
Query: 224 KELSGYNFKRQEFEIEYDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRK 283
++++GY R +F E+DN AE L D++F ++D+D LK+ V+ IY RL ER+RRK
Sbjct: 163 RDMAGYMPARADFIEEFDNYAEWDLRDIDFVEDDSDILHALKMAVVDIYHSRLKERQRRK 222
Query: 284 DFILERNLLFPDPF---ERNLSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKR 340
I + L+ F ER E +++Y+ + F R +H++ ++S E + +
Sbjct: 223 KIIRDHGLINLRKFQLMERRYPKEVQDLYETMRRFARIVGPVEHDKFIESHALEFELRRE 282
Query: 341 IQELQEAQAAGCRTSSEAHRFLEQKRKKEAEENGQRVKESGQAGPSGKVLQRPNSLKEVE 400
I+ LQE + AG A + K+ +E E R+K + + +VLQ +
Sbjct: 283 IKRLQEYRTAGITNFCSARTYDHLKKTREEE----RLKRTMLS----EVLQYIQDSSACQ 334
Query: 401 VSPRGVVRGSTSLQPFGNDSYSTIASSLEDWDISGFVGADLLSETEKRLCGEIKILPAHY 460
R + L P + ++ S +++G G + L+E EK LC ++++P Y
Sbjct: 335 QWLRRQADIDSGLSPSVPMTSNSGRRSAPPLNLTGLPGTEKLNEKEKELCQMVRLVPGAY 394
Query: 461 LKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKG 504
L+ L E K + + A L K++ NK ++YD L+R+G
Sbjct: 395 LEYKSALLNECNKQGGLRLAQARALIKIDVNKTRKIYDFLIREG 438
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 4 IKCAMCSD--FDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEGI 61
IKCA C F LC++CF+ G + H+S+H Y +M + FP++ P W A EE+ LLE +
Sbjct: 29 IKCAECGPPPFFLCLQCFTRGFEYKKHQSDHTYEIMTS-DFPVLDPSWTAQEEMALLEAV 87
Query: 62 EMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNSPCF 98
GFGNW +V+ + TK+K +C HY ++N+P F
Sbjct: 88 MDCGFGNWQDVANQMCTKTKEECEKHYMKHFINNPLF 124
>sp|Q503N9|TAD2B_DANRE Transcriptional adapter 2-beta OS=Danio rerio GN=tada2b PE=2 SV=1
Length = 486
Score = 94.4 bits (233), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/107 (41%), Positives = 65/107 (60%), Gaps = 9/107 (8%)
Query: 2 VRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPD----WNADEEILL 57
+RI+CA C D +LC ECFS GA+I H H Y+ +D F L P+ W + EE L
Sbjct: 19 LRIRCAECQDIELCPECFSAGAEIGNHRRWHGYQQVDGGRFSLWGPEAEGGWTSREEQSL 78
Query: 58 LEGIEMYGFGNWGEVSEHVG-TKSKSQCIDHYNAIYMNS----PCFP 99
L+ IE YGFGNW +++ HVG +++ + +DHY ++Y++ C P
Sbjct: 79 LDAIEQYGFGNWEDMAAHVGASRTPQEVMDHYVSMYIHGNLGKACIP 125
Score = 56.2 bits (134), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 119/287 (41%), Gaps = 56/287 (19%)
Query: 228 GYNFKRQEFEIEYDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRKDFIL 287
GY R ++EIEYD +AE L++ + N +D D E E+K + +Y ++L ER+RRK+
Sbjct: 165 GYMPLRDDYEIEYDQEAEKLISGLSVNYDDEDIEIEMKRAHVDMYVRKLRERQRRKNIAR 224
Query: 288 ERNL-------------------------------------LFP-DPF--------ERNL 301
+ NL + P P +R +
Sbjct: 225 DYNLVPAFLGRDKKDKERERAGGTVGVGGPGGAVGSGSGATVVPAGPLGSSTAATPKRKI 284
Query: 302 SPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKRIQELQEAQAAGCRTSSEAHRF 361
+ EE+ + + +F + + EE ++ +E + +++ELQ + G E+ +
Sbjct: 285 TKEEKGQRTKLRALCQFMPQREFEEFFDNMHKERMLRAKVRELQRYRRNGITRLDESAEY 344
Query: 362 LEQKRKKEAEENGQRVKESGQAGPSGKVLQRPNSLKEVEVSPRGVVRGSTSLQPFGNDS- 420
+ K+E + + + S + G G G ++++ G DS
Sbjct: 345 EAARHKREKRKENKSIAGSKRGSSGGGGGTAGLGGGVGAGGGLGGGGGVSTIKEEGKDSE 404
Query: 421 YSTIASSLEDWDISGFVGADLLSETEKRLCGEIKILPAHYLKMLEIL 467
+S I ++SGF +LLS+ EK LC + + P YL + I+
Sbjct: 405 FSAIE------NLSGF---ELLSDREKVLCNSMNLSPMRYLTVKTII 442
>sp|Q8I8V0|TAD2B_DROME Transcriptional adapter 2B OS=Drosophila melanogaster GN=Ada2b PE=1
SV=1
Length = 555
Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 4/97 (4%)
Query: 2 VRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLIC----PDWNADEEILL 57
+R+ CA C +FDLC++CF+ GA+I H++NH Y+ MD + L W A EEI L
Sbjct: 23 IRVHCAECENFDLCLQCFAAGAEIGAHQNNHSYQFMDTGTSILSVFRGKGAWTAREEIRL 82
Query: 58 LEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMN 94
L+ IE YGFGNW ++S+H+ TKS + Y ++N
Sbjct: 83 LDAIEQYGFGNWEDISKHIETKSAEDAKEEYVNKFVN 119
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/203 (28%), Positives = 93/203 (45%), Gaps = 16/203 (7%)
Query: 228 GYNFKRQEFEIEYDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRR----K 283
GY R FE EYD AE L++++ + DT+ + LKL + IY +RL ER RR +
Sbjct: 171 GYMPNRDSFEREYDPTAEQLISNISLSSEDTEVDVMLKLAHVDIYTRRLRERARRKRMVR 230
Query: 284 DFILERNLLFPDPF--ERNLSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKRI 341
D+ L N + ++ L+ E+RE +++V+ +F++ ++E LL S+ E + R
Sbjct: 231 DYQLVSNFFRNRNYAQQQGLTKEQREFRDRFRVYAQFYTCNEYERLLGSLEREKELRIRQ 290
Query: 342 QELQEAQAAGCRTSSEAHRFLEQKRKKEAEENG--------QRVKESGQAGPSGKVLQRP 393
EL + G +E F + G +G P L P
Sbjct: 291 SELYRYRYNGLTKIAECTHFEQHAATATHRSTGPYGHGKTDHTHTSNGSHRPPSSSLHSP 350
Query: 394 N-SLKEVEVSPRGVVRGSTSLQP 415
+L++VE+S G S S+ P
Sbjct: 351 QPNLRKVEMSSGGEA-SSNSIAP 372
>sp|Q6NRB5|TAD2B_XENLA Transcriptional adapter 2-beta OS=Xenopus laevis GN=tada2b PE=2
SV=1
Length = 420
Score = 92.8 bits (229), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 40/107 (37%), Positives = 66/107 (61%), Gaps = 9/107 (8%)
Query: 2 VRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPD----WNADEEILL 57
+R++C C D +LC +CFS GA+I H H Y+++D F L P+ W + EE LL
Sbjct: 19 LRLRCTECQDIELCTDCFSAGAEIGNHRRWHGYQLVDGGRFTLWGPEAEGGWTSREEQLL 78
Query: 58 LEGIEMYGFGNWGEVSEHVG-TKSKSQCIDHYNAIYMNS----PCFP 99
L+ IE +GFGNW +++ HVG +++ ++ ++HY +Y++ C P
Sbjct: 79 LDAIEQFGFGNWEDMAAHVGASRTPTEVMEHYVTMYIHGNLGKACIP 125
Score = 76.3 bits (186), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 111/250 (44%), Gaps = 48/250 (19%)
Query: 228 GYNFKRQEFEIEYDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRKDFIL 287
GY R ++EIE+D +AE L++ + N +D D E ELK + +Y ++L ER+RRK
Sbjct: 165 GYMPLRDDYEIEFDQEAETLISGLSVNYDDDDVEVELKEAYVDMYVRKLKERQRRKSLAR 224
Query: 288 ERNLLFP----------DPFERNLSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRI 337
+ NL+ P +R +S EE+E+ + + +F S ++ E+ +++ +E +
Sbjct: 225 DYNLVPAFLGKDKKEKEKPAKRKISKEEKELRLKLRPLYQFMSNKEIEDCFENMHKERML 284
Query: 338 VKRIQELQEAQAAGCRTSSEAHRFLEQKRKKEAEENGQRVKESGQAGPSGKVLQRPNSLK 397
+I+ELQ + G + E+ + + K+E + + + S + GK
Sbjct: 285 RAKIRELQRYRRNGITKTEESAEYEAARHKREKRKENKNIANSKRGREDGK--------- 335
Query: 398 EVEVSPRGVVRGSTSLQPFGNDSYSTIASSLEDWDISGFVGADLLSETEKRLCGEIKILP 457
E E + I G +LLS+ EK LC + + P
Sbjct: 336 ESEFAA-----------------------------IENLAGFELLSDREKVLCSSLNLSP 366
Query: 458 AHYLKMLEIL 467
YL + I+
Sbjct: 367 TRYLTVKTII 376
>sp|Q5ZJF3|TAD2A_CHICK Transcriptional adapter 2-alpha OS=Gallus gallus GN=TADA2A PE=2
SV=1
Length = 446
Score = 92.4 bits (228), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 62/97 (63%), Gaps = 3/97 (3%)
Query: 4 IKCAMCSD--FDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEGI 61
+KCA C F LC++CF+ G + H+S+H Y +M + FP++ P+W A EE+ LLE +
Sbjct: 29 VKCAECGPPPFLLCLQCFTRGFEYKKHQSDHTYEIMTS-DFPVLDPNWTAQEEMALLEAV 87
Query: 62 EMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNSPCF 98
GFGNW +V+ + TKSK +C HY ++N+P F
Sbjct: 88 MDCGFGNWQDVANQMCTKSKEECEKHYMKHFINNPLF 124
Score = 92.0 bits (227), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 76/287 (26%), Positives = 137/287 (47%), Gaps = 14/287 (4%)
Query: 224 KELSGYNFKRQEFEIE-YDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKR- 281
++++GY R +DN AE L D++F ++D+D LK+ V+ IY R K
Sbjct: 163 RDMAGYMPARARLSSRSFDNYAEWDLRDIDFVEDDSDILHALKIAVVDIYHSRFKREKTA 222
Query: 282 -RKDFILERNLLFPDPF---ERNLSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRI 337
RK I + L+ F ER E +++Y+ + F R +H++ ++S E +
Sbjct: 223 GRKKIIRDHGLINLRKFQILERRYPKEVQDLYETMRRFARILGPVEHDKFIESHALEFEL 282
Query: 338 VKRIQELQEAQAAGCRTSSEAHRFLEQKRKKEAEENGQRVKESGQAGPSGKVLQRPNSLK 397
+ I+ LQE +AAG A + K+ ++ E R+K + + +Q ++ +
Sbjct: 283 RREIKRLQEYRAAGITNFCSARTYDHLKKTRDEE----RLKRT-MLSEVLQYIQDSSACQ 337
Query: 398 EVEVSPRGVVRGSTSLQPFGNDSYSTIASSLEDWDISGFVGADLLSETEKRLCGEIKILP 457
+ + G T P ++S A L +++G G + L+E EK LC ++++P
Sbjct: 338 QWLSRQADIDSGPTPAAPIPSNSGRRSAPPL---NLTGLPGTEKLNEKEKELCQMVRLVP 394
Query: 458 AHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKG 504
YL+ L E K + + A L K++ NK ++YD L+R+G
Sbjct: 395 GAYLEYKAALVNECNKQGGLRLAQARALIKIDVNKTRKIYDFLIREG 441
>sp|Q5RBN9|TAD2B_PONAB Transcriptional adapter 2-beta OS=Pongo abelii GN=TADA2B PE=2 SV=1
Length = 420
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 9/107 (8%)
Query: 2 VRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPD----WNADEEILL 57
+R +C C D +LC ECFS GA+I H H Y+++D F L P+ W + EE LL
Sbjct: 19 LRFRCTECQDIELCPECFSAGAEIGHHRRYHGYQLVDGGRFTLWGPEAEGGWTSREEQLL 78
Query: 58 LEGIEMYGFGNWGEVSEHVG-TKSKSQCIDHYNAIYMNS----PCFP 99
L+ IE +GFGNW +++ HVG +++ + ++HY ++Y++ C P
Sbjct: 79 LDAIEQFGFGNWEDMAAHVGASRTPQEVMEHYVSMYIHGNLGKACIP 125
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 115/250 (46%), Gaps = 48/250 (19%)
Query: 228 GYNFKRQEFEIEYDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRKDFIL 287
GY R ++EIEYD DAE L++ + N +D D E ELK + +Y ++L ER+RRK+
Sbjct: 165 GYMPLRDDYEIEYDQDAETLISGLSVNYDDDDVEIELKRAHVDMYVRKLKERQRRKNIAR 224
Query: 288 ERNLLFP----------DPFERNLSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRI 337
+ NL+ +R ++ EE+E+ + + +F S ++ ++L +++ +E +
Sbjct: 225 DYNLVPAFLGKDKKEKEKALKRKITKEEKELRLKLRPLYQFMSCKEFDDLFENMHKEKML 284
Query: 338 VKRIQELQEAQAAGCRTSSEAHRFLEQKRKKEAEENGQRVKESGQAGPSGKVLQRPNSLK 397
+I+ELQ + G E+ + + K+E + + + S + GK
Sbjct: 285 RAKIRELQRYRRNGITKMEESAEYEAARHKREKRKENKNLAGSKRGKEDGK--------- 335
Query: 398 EVEVSPRGVVRGSTSLQPFGNDSYSTIASSLEDWDISGFVGADLLSETEKRLCGEIKILP 457
+ ++ I ++ GF +LLS+ EK LC + + P
Sbjct: 336 --------------------DSEFAAIE------NLPGF---ELLSDREKVLCSSLNLSP 366
Query: 458 AHYLKMLEIL 467
A Y+ + I+
Sbjct: 367 ARYVTVKTII 376
>sp|Q86TJ2|TAD2B_HUMAN Transcriptional adapter 2-beta OS=Homo sapiens GN=TADA2B PE=1 SV=2
Length = 420
Score = 91.7 bits (226), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 65/107 (60%), Gaps = 9/107 (8%)
Query: 2 VRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPD----WNADEEILL 57
+R +C C D +LC ECFS GA+I H H Y+++D F L P+ W + EE LL
Sbjct: 19 LRFRCTECQDIELCPECFSAGAEIGHHRRYHGYQLVDGGRFTLWGPEAEGGWTSREEQLL 78
Query: 58 LEGIEMYGFGNWGEVSEHVG-TKSKSQCIDHYNAIYMNS----PCFP 99
L+ IE +GFGNW +++ HVG +++ + ++HY ++Y++ C P
Sbjct: 79 LDAIEQFGFGNWEDMAAHVGASRTPQEVMEHYVSMYIHGNLGKACIP 125
Score = 73.2 bits (178), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 61/250 (24%), Positives = 115/250 (46%), Gaps = 48/250 (19%)
Query: 228 GYNFKRQEFEIEYDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRKDFIL 287
GY R ++EIEYD DAE L++ + N +D D E ELK + +Y ++L ER+RRK+
Sbjct: 165 GYMPLRDDYEIEYDQDAETLISGLSVNYDDDDVEIELKRAHVDMYVRKLKERQRRKNIAR 224
Query: 288 ERNLLFP----------DPFERNLSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRI 337
+ NL+ +R ++ EE+E+ + + +F S ++ ++L +++ +E +
Sbjct: 225 DYNLVPAFLGKDKKEKEKALKRKITKEEKELRLKLRPLYQFMSCKEFDDLFENMHKEKML 284
Query: 338 VKRIQELQEAQAAGCRTSSEAHRFLEQKRKKEAEENGQRVKESGQAGPSGKVLQRPNSLK 397
+I+ELQ + G E+ + + K+E + + + S + GK
Sbjct: 285 RAKIRELQRYRRNGITKMEESAEYEAARHKREKRKENKNLAGSKRGKEDGK--------- 335
Query: 398 EVEVSPRGVVRGSTSLQPFGNDSYSTIASSLEDWDISGFVGADLLSETEKRLCGEIKILP 457
+ ++ I ++ GF +LLS+ EK LC + + P
Sbjct: 336 --------------------DSEFAAIE------NLPGF---ELLSDREKVLCSSLNLSP 366
Query: 458 AHYLKMLEIL 467
A Y+ + I+
Sbjct: 367 ARYVTVKTII 376
>sp|Q7KSD8|TAD2A_DROME Transcriptional adapter 2A OS=Drosophila melanogaster GN=Rpb4 PE=1
SV=1
Length = 562
Score = 68.6 bits (166), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 4 IKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVM-DNLSFPLICPDWNADEEILLLEGIE 62
IKC+ C D LC++CFS G + + H +NH Y ++ DN+ P W A +E +LL+ +
Sbjct: 108 IKCSECLDTLLCLQCFSRGKEAFSHRNNHAYIIVRDNIQVFADEPHWTARDERILLKTLR 167
Query: 63 MYGFGNWGEVSEHVGTKSK-SQCIDHYNAIYMNSPCFPLPDLSHV 106
+G+GNW VS+ + + + ++ HY+ Y L +L H
Sbjct: 168 THGYGNWEAVSQALDQRHEPAEVRRHYHDCYFGGIFERLLNLKHA 212
Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 73/311 (23%), Positives = 136/311 (43%), Gaps = 37/311 (11%)
Query: 227 SGYNFKRQEFEIEYDNDAEHLLADM-EFNKNDTDAE-----------RELKLRVLRIYGK 274
+GY R +F+ YD AE LL+ M + D D E EL+L ++R Y
Sbjct: 247 AGYRCARGDFDTPYDTSAESLLSIMVDHRGRDDDNEASESEFEREVTEELQLGLVRAYNN 306
Query: 275 RLDERKRRKDFILERNLLFPDPFERNLSPEEREIY--------QQYKVFMRFHSKEDHEE 326
RL ER+RR + + L+ P+ R +S + ++ ++ FM+ +
Sbjct: 307 RLRERQRRYKIMRQHGLIMPN---RTVSWISKYVHAFGSDASCMRFLGFMQICPDPIKFD 363
Query: 327 LLKSVIEEHR-IVKRIQELQEAQAAGCRTSSEAHRFLE-QKRKKEAEENGQRVKESGQAG 384
+L + +R + ++ +L + + G RT S A + K +++A+ + R+K++ A
Sbjct: 364 MLLESLRYYRELHSQLHKLYDLREHGVRTLSGAKLYARLSKERQQAQRDYSRLKQT-DAF 422
Query: 385 PSGKVLQRPNSLKEVEVSPRGV--------VRGSTSLQPFGNDSYSTIASSLEDWDIS-- 434
+++Q S + + P + R S G + T + +++ S
Sbjct: 423 DWQQLVQHYESNRSGDPGPLAINSKLYVMNTRRKASPIEIGGGKHFTHCLTPTEYNFSLI 482
Query: 435 -GFVGADLLSETEKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKV 493
G L + E++LC +++P YL L E K + +DA L K++ NK
Sbjct: 483 PDLPGYSKLDDGERKLCSVARLVPQSYLDYKNQLVTEQAKLGYLRLADARRLIKIDVNKT 542
Query: 494 DRVYDMLVRKG 504
++YD L+ G
Sbjct: 543 RQIYDFLLEHG 553
>sp|Q9XI07|SWI3C_ARATH SWI/SNF complex subunit SWI3C OS=Arabidopsis thaliana GN=SWI3C PE=1
SV=1
Length = 807
Score = 55.8 bits (133), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 11 DFDLCVECFSVGAQIYPHESNHPYRVMDNLSF--PLICPDWNADEEILLLEGIEMYGFGN 68
D LC +CF G + H RV D + F +W E +LLLE +E+Y N
Sbjct: 364 DILLCCDCFHHGRFVVGHSCLDFVRV-DPMKFYGDQDGDNWTDQETLLLLEAVELYN-EN 421
Query: 69 WGEVSEHVGTKSKSQCIDHY 88
W ++++HVG+KSK+QCI H+
Sbjct: 422 WVQIADHVGSKSKAQCILHF 441
>sp|Q8VY05|SWI3D_ARATH SWI/SNF complex subunit SWI3D OS=Arabidopsis thaliana GN=SWI3D PE=1
SV=3
Length = 985
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 52/174 (29%), Positives = 80/174 (45%), Gaps = 6/174 (3%)
Query: 3 RIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEGIE 62
R C +DFDLC ECF+ G S+ +M+ P + D+E LLL
Sbjct: 321 RYHCPKQADFDLCTECFNSGKFSSDMSSSDFI-LMEPAEAPGVGSGKWTDQETLLLLEAL 379
Query: 63 MYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNSPCFPLPDLSHVMGKNREELLAMAKEHQ 122
NW E++EHV TK+K+QC+ H+ + + D + K+ + LA++K+
Sbjct: 380 EIFKENWNEIAEHVATKTKAQCMLHFLQMPIEDAFLDQIDYKDPISKDTTD-LAVSKDDN 438
Query: 123 QVKKELPTVAELA--LKEDAPFSTRMKPETRKEDTTRQSSS--GLTTVEVNSID 172
V K+ P AE + ED +PE E+ Q SS G + E N ++
Sbjct: 439 SVLKDAPEEAENKKRVDEDETMKEVPEPEDGNEEKVSQESSKPGDASEETNEME 492
>sp|O14470|SSR2_SCHPO SWI/SNF and RSC complexes subunit ssr2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr2 PE=1 SV=3
Length = 503
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 13/91 (14%)
Query: 12 FDLCVECFSVGAQIYPHESNHPYRVMDNLSF------PLICPDWNADEEILLLEGIEMYG 65
+D+C C+ G + ++ + MD + F P W+ E +LLLE IE YG
Sbjct: 213 YDICPNCYKQG-RFSSSFNSSDFLCMDAIDFNHDEEKP-----WSNQETLLLLEAIETYG 266
Query: 66 FGNWGEVSEHVGTKSKSQCIDHYNAIYMNSP 96
+W +++ HVG+++K QC+ H+ I + P
Sbjct: 267 -DDWNQIALHVGSRTKEQCLIHFLQIPIEDP 296
>sp|O13788|SSR1_SCHPO SWI/SNF and RSC complexes subunit ssr1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=ssr1 PE=1 SV=1
Length = 527
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
Query: 49 WNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCI 85
W A E +LL EG+EMY +W +V+ HV TKS +CI
Sbjct: 293 WTAQELVLLSEGVEMYS-DDWAKVASHVNTKSVEECI 328
>sp|Q54J55|MYBX_DICDI Myb-like protein X OS=Dictyostelium discoideum GN=mybX PE=3 SV=1
Length = 1620
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 14 LCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEGIEMYGFGNWGEVS 73
+CV CFS G +S+ R+ + W E +LLLEGIE++ NW E+S
Sbjct: 898 ICVNCFSSGNYENFIQSSSFQRIEQHQPEEF---GWTDIETLLLLEGIEIFR-DNWQEIS 953
Query: 74 EHV-GTKSKSQCIDHY 88
+++ G+K+ QC+ H+
Sbjct: 954 DYIGGSKTPEQCLTHF 969
>sp|Q8BP86|SNPC4_MOUSE snRNA-activating protein complex subunit 4 OS=Mus musculus
GN=Snapc4 PE=2 SV=2
Length = 1333
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 35 RVMDNLSFPLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAI 91
R + L F L WNA EE L++ IE YG G+W ++ + +S SQC+ + +
Sbjct: 442 RYIRRLHFSLKKGRWNAKEEQQLIQLIEKYGVGHWARIASELPHRSGSQCLSKWKIL 498
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 49 WNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHY 88
W +E+ LL+ + YG +W ++ E V +S +QC D Y
Sbjct: 404 WAPEEDAKLLQAVAKYGAQDWFKIREEVPGRSDAQCRDRY 443
>sp|Q869R9|MYBJ_DICDI Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1
Length = 734
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%)
Query: 49 WNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYM 93
W +E I L GI+++G G W E+++ VGT++ +Q H Y+
Sbjct: 379 WTKEEHIRFLNGIQIHGKGAWKEIAQFVGTRTPTQIQSHAQKYYL 423
>sp|P43609|RSC8_YEAST Chromatin structure-remodeling complex protein RSC8
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=RSC8 PE=1 SV=1
Length = 557
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 4/88 (4%)
Query: 2 VRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLEGI 61
VR D +LC CF G +S+ R+ +N + + +W+ E +LLLEGI
Sbjct: 270 VRYHNLRARDTNLCSRCFQEGHFGANFQSSDFIRLENNGNS--VKKNWSDQEMLLLLEGI 327
Query: 62 EMYGFGNWGEVSEHVGTKSKSQ-CIDHY 88
EMY W ++++HVG + + CI+ +
Sbjct: 328 EMYE-DQWEKIADHVGGHKRVEDCIEKF 354
>sp|Q6GPB6|KCMF1_XENLA E3 ubiquitin-protein ligase KCMF1 OS=Xenopus laevis GN=kcmf1 PE=2
SV=1
Length = 381
Score = 42.4 bits (98), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 3 RIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVM 37
R KC +C D+DLC C+ GA H ++HP + +
Sbjct: 21 RYKCLICYDYDLCASCYESGATTTRHTTDHPMQCI 55
>sp|Q9P0J7|KCMF1_HUMAN E3 ubiquitin-protein ligase KCMF1 OS=Homo sapiens GN=KCMF1 PE=1
SV=2
Length = 381
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 3 RIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVM 37
R KC +C D+DLC C+ GA H ++HP + +
Sbjct: 21 RYKCLICYDYDLCASCYESGATTTRHTTDHPMQCI 55
>sp|Q1LZE1|KCMF1_BOVIN E3 ubiquitin-protein ligase KCMF1 OS=Bos taurus GN=KCMF1 PE=2
SV=1
Length = 381
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 3 RIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVM 37
R KC +C D+DLC C+ GA H ++HP + +
Sbjct: 21 RYKCLICYDYDLCASCYESGATTTRHTTDHPMQCI 55
>sp|Q80UY2|KCMF1_MOUSE E3 ubiquitin-protein ligase KCMF1 OS=Mus musculus GN=Kcmf1 PE=2
SV=1
Length = 381
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 3 RIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVM 37
R KC +C D+DLC C+ GA H ++HP + +
Sbjct: 21 RYKCLICYDYDLCASCYESGATTTRHTTDHPMQCI 55
>sp|Q7T321|KCMF1_DANRE E3 ubiquitin-protein ligase KCMF1 OS=Danio rerio GN=kcmf1 PE=2
SV=1
Length = 383
Score = 40.8 bits (94), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 3 RIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVM 37
R KC +C D+DLC C+ GA H + HP + +
Sbjct: 21 RYKCLICYDYDLCASCYESGATTTRHTTEHPMQCI 55
>sp|Q84JG2|SWI3B_ARATH SWI/SNF complex subunit SWI3B OS=Arabidopsis thaliana GN=SWI3B PE=1
SV=1
Length = 469
Score = 40.0 bits (92), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 45/97 (46%), Gaps = 20/97 (20%)
Query: 1 MVRIKCAMCSDFDL--CVECFSVGAQIYPHESNHPYRVMDNLS-FPLI------CPDWNA 51
+ I C C +DL C C+ SN YRV N S F + P+W+
Sbjct: 181 ICSIACFACDKYDLTLCARCYV--------RSN--YRVGINSSEFKRVEISEESKPEWSD 230
Query: 52 DEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHY 88
E +LLLE + YG +W +V+ HV +++ C+ +
Sbjct: 231 KEILLLLEAVMHYG-DDWKKVASHVIGRTEKDCVSQF 266
>sp|P34664|YOY6_CAEEL Uncharacterized protein ZK652.6 OS=Caenorhabditis elegans
GN=ZK652.6 PE=4 SV=2
Length = 575
Score = 38.9 bits (89), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 9/52 (17%)
Query: 3 RIKCAMCSDFDLCVECFSVG--------AQIYPHESNHPYR-VMDNLSFPLI 45
R KC CSD+DLC CF+ A I H+ +HP + ++ ++ F L+
Sbjct: 26 RYKCLRCSDYDLCFSCFTTKNYGDQQTIADIPIHDESHPMQLILSSVDFDLV 77
>sp|Q5SXM2|SNPC4_HUMAN snRNA-activating protein complex subunit 4 OS=Homo sapiens
GN=SNAPC4 PE=1 SV=1
Length = 1469
Score = 36.2 bits (82), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 34 YRVMDNLSFPLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHY 88
YR +L L W +E+ LL+ + YG +W ++ E V +S +QC D Y
Sbjct: 389 YRWTKSLDPGLKKGYWAPEEDAKLLQAVAKYGEQDWFKIREEVPGRSDAQCRDRY 443
>sp|O53750|Y465_MYCTU Uncharacterized HTH-type transcriptional regulator Rv0465c/MT0481
OS=Mycobacterium tuberculosis GN=Rv0465c PE=4 SV=1
Length = 474
Score = 36.2 bits (82), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 224 KELSGYNFKRQEFEIEYDNDAEHLLADMEFNKNDTDAERELKLRVLRIYGKRLDERKRRK 283
+E+ Y ++RQ + D AE L A M + D REL R+ ++G R+++R
Sbjct: 144 EEVRDYFYQRQNYLHALDTAAEDLTAQMRMHHGDL--ARELTRRLTEVHGVRINKRIDLG 201
Query: 284 DFILER 289
D +L R
Sbjct: 202 DTVLHR 207
>sp|Q54NA6|MYBL_DICDI Myb-like protein L OS=Dictyostelium discoideum GN=mybL PE=3 SV=1
Length = 855
Score = 35.8 bits (81), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 49 WNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHY 88
W+ +E+ L+ + YG GNW + HV ++ QC + Y
Sbjct: 655 WSPEEDQCLINAVNAYGKGNWILIKNHVKGRTDVQCRERY 694
>sp|B4SIY9|CCA_STRM5 Multifunctional CCA protein OS=Stenotrophomonas maltophilia (strain
R551-3) GN=cca PE=3 SV=1
Length = 406
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%)
Query: 287 LERNLLFPDPFERNLSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKRIQELQE 346
L + L P+ + R++ E+R I ++ R +H++L ++V EH V RI EL++
Sbjct: 259 LGKGLTPPEEWPRHIMHEQRGIKPLKELCARLRVPTEHQQLAEAVCREHLNVHRIDELRD 318
Query: 347 A 347
A
Sbjct: 319 A 319
>sp|P97496|SMRC1_MOUSE SWI/SNF complex subunit SMARCC1 OS=Mus musculus GN=Smarcc1 PE=1
SV=2
Length = 1104
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 68 NWGEVSEHVGTKSKSQCIDHYNAIYMNSP 96
+W +VSEHVG++++ +CI H+ + + P
Sbjct: 640 DWNKVSEHVGSRTQDECILHFLRLPIEDP 668
>sp|Q92922|SMRC1_HUMAN SWI/SNF complex subunit SMARCC1 OS=Homo sapiens GN=SMARCC1 PE=1
SV=3
Length = 1105
Score = 33.5 bits (75), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 68 NWGEVSEHVGTKSKSQCIDHYNAIYMNSP 96
+W +VSEHVG++++ +CI H+ + + P
Sbjct: 641 DWNKVSEHVGSRTQDECILHFLRLPIEDP 669
>sp|Q6PDG5|SMRC2_MOUSE SWI/SNF complex subunit SMARCC2 OS=Mus musculus GN=Smarcc2 PE=1
SV=2
Length = 1213
Score = 33.5 bits (75), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 68 NWGEVSEHVGTKSKSQCIDHYNAIYMNSP 96
+W +VSEHVG++++ +CI H+ + + P
Sbjct: 619 DWNKVSEHVGSRTQDECILHFLRLPIEDP 647
>sp|Q8TAQ2|SMRC2_HUMAN SWI/SNF complex subunit SMARCC2 OS=Homo sapiens GN=SMARCC2 PE=1
SV=1
Length = 1214
Score = 33.5 bits (75), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 68 NWGEVSEHVGTKSKSQCIDHYNAIYMNSP 96
+W +VSEHVG++++ +CI H+ + + P
Sbjct: 619 DWNKVSEHVGSRTQDECILHFLRLPIEDP 647
>sp|Q60974|NCOR1_MOUSE Nuclear receptor corepressor 1 OS=Mus musculus GN=Ncor1 PE=1 SV=1
Length = 2453
Score = 33.5 bits (75), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 49 WNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHY 88
W +E + +G+ +G NW +++ VGTKS++QC + Y
Sbjct: 627 WTEEEMEVAKKGLVEHGR-NWAAIAKMVGTKSEAQCKNFY 665
>sp|O75376|NCOR1_HUMAN Nuclear receptor corepressor 1 OS=Homo sapiens GN=NCOR1 PE=1 SV=2
Length = 2440
Score = 33.5 bits (75), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 49 WNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHY 88
W +E + +G+ +G NW +++ VGTKS++QC + Y
Sbjct: 628 WTEEEMEVAKKGLVEHGR-NWAAIAKMVGTKSEAQCKNFY 666
>sp|B2FUP5|CCA_STRMK Multifunctional CCA protein OS=Stenotrophomonas maltophilia (strain
K279a) GN=cca PE=3 SV=1
Length = 406
Score = 33.1 bits (74), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 33/61 (54%)
Query: 287 LERNLLFPDPFERNLSPEEREIYQQYKVFMRFHSKEDHEELLKSVIEEHRIVKRIQELQE 346
L + L P+ + R++ E+R I + R +H++L ++V EH V RI EL++
Sbjct: 259 LGKGLTPPEEWPRHIMHEQRGIKPLKALCARLKIPAEHQQLAEAVCREHLNVHRIDELRD 318
Query: 347 A 347
A
Sbjct: 319 A 319
>sp|O14139|HRP3_SCHPO Chromodomain helicase hrp3 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=hrp3 PE=1 SV=1
Length = 1388
Score = 32.7 bits (73), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 48/121 (39%), Gaps = 21/121 (17%)
Query: 49 WNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNSPCFP--------- 99
W E+ +LL GI +GFG W E+ + K K + NS P
Sbjct: 1123 WGPREDSMLLSGICKHGFGAWLEIRDDPELKMKDKIFLEDTKQTDNS--VPKDKENKEKK 1180
Query: 100 LPDLSHVMGKNREELLAMAKEHQQVKKELPTVAELALKEDAPFSTRMKPETRKEDTTRQS 159
+P H++ + E LL+ +EH Q +K ST K + +K+ R+
Sbjct: 1181 VPSAVHLVRRG-EYLLSALREHHQ---------NFGIKSSPAISTNGKTQPKKQTANRRQ 1230
Query: 160 S 160
S
Sbjct: 1231 S 1231
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.132 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 187,223,095
Number of Sequences: 539616
Number of extensions: 8148513
Number of successful extensions: 22334
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 284
Number of HSP's that attempted gapping in prelim test: 21911
Number of HSP's gapped (non-prelim): 612
length of query: 508
length of database: 191,569,459
effective HSP length: 122
effective length of query: 386
effective length of database: 125,736,307
effective search space: 48534214502
effective search space used: 48534214502
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 63 (28.9 bits)