Query 010514
Match_columns 508
No_of_seqs 199 out of 730
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 08:26:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2cuj_A Transcriptional adaptor 99.9 5.2E-26 1.8E-30 197.0 12.5 85 424-508 23-107 (108)
2 2aqe_A Transcriptional adaptor 99.9 2.3E-26 7.8E-31 193.6 9.9 85 424-508 5-89 (90)
3 2elj_A Transcriptional adapter 99.9 5.2E-26 1.8E-30 190.7 8.4 83 424-506 4-88 (88)
4 2elk_A SPCC24B10.08C protein; 99.6 1.5E-15 5E-20 117.6 8.1 56 39-94 2-58 (58)
5 2yus_A SWI/SNF-related matrix- 99.5 6.3E-14 2.1E-18 115.1 8.7 56 44-100 16-71 (79)
6 1x41_A Transcriptional adaptor 99.5 1.5E-13 5E-18 107.0 8.1 55 42-96 4-58 (60)
7 1guu_A C-MYB, MYB proto-oncoge 99.2 4.5E-11 1.5E-15 90.0 6.5 47 46-92 3-49 (52)
8 1gvd_A MYB proto-oncogene prot 99.2 4.9E-11 1.7E-15 89.8 6.5 47 45-91 2-48 (52)
9 1w0t_A Telomeric repeat bindin 99.1 1.1E-10 3.8E-15 88.3 6.8 46 46-91 2-49 (53)
10 2d9a_A B-MYB, MYB-related prot 99.1 1.5E-10 5.1E-15 89.7 7.4 50 43-92 5-54 (60)
11 2yum_A ZZZ3 protein, zinc fing 99.1 1.7E-10 5.9E-15 93.3 6.7 52 43-94 5-61 (75)
12 2dim_A Cell division cycle 5-l 99.1 3.6E-10 1.2E-14 90.3 7.8 50 43-92 6-55 (70)
13 3sjm_A Telomeric repeat-bindin 99.0 4E-10 1.4E-14 88.7 6.8 47 45-91 10-58 (64)
14 2cu7_A KIAA1915 protein; nucle 99.0 5.9E-10 2E-14 89.6 7.7 49 43-92 6-54 (72)
15 1ity_A TRF1; helix-turn-helix, 99.0 5.6E-10 1.9E-14 88.9 6.8 49 44-92 8-58 (69)
16 2cjj_A Radialis; plant develop 98.9 8.7E-10 3E-14 93.0 5.6 59 46-104 8-74 (93)
17 2cqr_A RSGI RUH-043, DNAJ homo 98.9 8.5E-10 2.9E-14 89.0 4.5 51 44-95 16-69 (73)
18 1wgx_A KIAA1903 protein; MYB D 98.8 3E-09 1E-13 85.6 5.8 46 46-91 8-56 (73)
19 2din_A Cell division cycle 5-l 98.8 6.6E-09 2.3E-13 81.9 6.5 49 42-92 5-53 (66)
20 2ckx_A NGTRF1, telomere bindin 98.8 1.1E-08 3.6E-13 84.6 6.5 45 48-92 2-50 (83)
21 2ltp_A Nuclear receptor corepr 98.2 8.7E-10 3E-14 92.3 0.0 51 40-91 10-60 (89)
22 2k9n_A MYB24; R2R3 domain, DNA 98.8 1E-08 3.4E-13 88.4 6.7 46 47-92 2-47 (107)
23 1gv2_A C-MYB, MYB proto-oncoge 98.8 9.8E-09 3.4E-13 87.9 6.5 48 45-92 3-50 (105)
24 2e5r_A Dystrobrevin alpha; ZZ 98.7 5.5E-09 1.9E-13 81.9 3.7 38 2-39 25-62 (63)
25 1h8a_C AMV V-MYB, MYB transfor 98.7 2.9E-08 1E-12 88.1 7.4 50 43-92 24-73 (128)
26 3zqc_A MYB3; transcription-DNA 98.7 1.5E-08 5E-13 90.5 5.0 47 46-92 2-48 (131)
27 2llk_A Cyclin-D-binding MYB-li 98.7 3.8E-08 1.3E-12 79.3 6.8 48 41-90 18-65 (73)
28 2eqr_A N-COR1, N-COR, nuclear 98.6 5.1E-08 1.7E-12 75.8 6.6 44 46-90 12-55 (61)
29 3osg_A MYB21; transcription-DN 98.6 6.8E-08 2.3E-12 85.6 6.9 48 44-92 9-56 (126)
30 1gv2_A C-MYB, MYB proto-oncoge 98.6 9.4E-08 3.2E-12 81.8 6.8 48 43-91 53-100 (105)
31 2k9n_A MYB24; R2R3 domain, DNA 98.6 1.2E-07 4E-12 81.7 7.3 48 43-91 50-97 (107)
32 3osg_A MYB21; transcription-DN 98.5 1.5E-07 5E-12 83.5 6.8 48 43-91 59-106 (126)
33 2roh_A RTBP1, telomere binding 98.5 1.8E-07 6E-12 82.5 6.8 48 45-92 30-81 (122)
34 2aje_A Telomere repeat-binding 98.5 1.6E-07 5.4E-12 80.8 5.8 51 44-94 11-65 (105)
35 3zqc_A MYB3; transcription-DNA 98.5 2E-07 6.7E-12 83.1 6.4 49 43-92 51-99 (131)
36 2iw5_B Protein corest, REST co 98.5 2.8E-07 9.5E-12 88.6 7.8 50 42-92 129-178 (235)
37 1h8a_C AMV V-MYB, MYB transfor 98.4 3.2E-07 1.1E-11 81.3 6.9 48 43-91 76-123 (128)
38 2cqq_A RSGI RUH-037, DNAJ homo 98.4 6.2E-07 2.1E-11 72.1 7.8 57 45-102 7-70 (72)
39 1h89_C C-MYB, MYB proto-oncoge 98.4 4.2E-07 1.4E-11 83.5 7.3 50 43-92 55-104 (159)
40 2juh_A Telomere binding protei 98.4 2.5E-07 8.5E-12 81.5 5.4 50 44-93 15-68 (121)
41 2fc7_A ZZZ3 protein; structure 98.4 1.7E-07 5.8E-12 77.2 4.0 42 2-43 35-79 (82)
42 2dip_A Zinc finger SWIM domain 98.2 2.6E-07 8.8E-12 78.6 1.1 42 2-53 45-86 (98)
43 2yqk_A Arginine-glutamic acid 98.2 4.9E-06 1.7E-10 65.0 7.5 45 44-89 7-52 (63)
44 1h89_C C-MYB, MYB proto-oncoge 98.2 2.6E-06 8.9E-11 78.1 6.7 48 43-91 107-154 (159)
45 2xag_B REST corepressor 1; ami 98.0 5.7E-06 2E-10 88.0 7.1 48 44-92 378-425 (482)
46 4eef_G F-HB80.4, designed hema 98.0 1.3E-06 4.3E-11 69.9 0.3 44 46-89 20-66 (74)
47 2crg_A Metastasis associated p 97.9 1.3E-05 4.5E-10 63.9 6.0 44 46-90 8-52 (70)
48 1x58_A Hypothetical protein 49 97.9 1.9E-05 6.5E-10 61.3 6.4 47 45-92 7-56 (62)
49 4a69_C Nuclear receptor corepr 97.9 2E-05 6.9E-10 66.4 6.1 44 46-90 43-86 (94)
50 1tot_A CREB-binding protein; z 97.8 6.6E-06 2.3E-10 61.9 2.2 31 2-38 18-48 (52)
51 1ign_A Protein (RAP1); RAP1,ye 97.6 3.2E-05 1.1E-09 75.0 4.6 49 44-92 6-59 (246)
52 1fex_A TRF2-interacting telome 96.6 0.0021 7.3E-08 49.4 4.4 46 46-91 2-56 (59)
53 3hm5_A DNA methyltransferase 1 96.5 0.0045 1.5E-07 51.8 6.4 45 46-91 30-79 (93)
54 2xb0_X Chromo domain-containin 96.4 0.0028 9.5E-08 63.0 5.3 33 42-74 164-196 (270)
55 4b4c_A Chromodomain-helicase-D 96.1 0.0059 2E-07 57.9 5.5 32 45-76 133-164 (211)
56 1ug2_A 2610100B20RIK gene prod 95.9 0.013 4.6E-07 48.5 6.2 45 48-92 35-81 (95)
57 1ofc_X ISWI protein; nuclear p 95.9 0.0083 2.8E-07 60.5 5.6 48 47-95 111-158 (304)
58 2fq3_A Transcription regulator 95.8 0.023 7.7E-07 48.6 7.4 69 439-507 22-98 (104)
59 2ebi_A DNA binding protein GT- 95.2 0.012 4.1E-07 48.1 3.3 46 47-92 5-63 (86)
60 4iej_A DNA methyltransferase 1 94.7 0.063 2.2E-06 44.8 6.4 45 46-91 30-79 (93)
61 1irz_A ARR10-B; helix-turn-hel 94.2 0.1 3.6E-06 40.6 6.3 48 46-93 7-58 (64)
62 2dce_A KIAA1915 protein; swirm 93.9 0.073 2.5E-06 45.9 5.4 70 438-507 23-101 (111)
63 2xag_B REST corepressor 1; ami 93.8 0.011 3.7E-07 63.0 0.0 46 45-91 188-233 (482)
64 2lr8_A CAsp8-associated protei 92.5 0.014 4.7E-07 45.9 0.0 43 48-91 16-60 (70)
65 1ofc_X ISWI protein; nuclear p 91.6 0.18 6.3E-06 50.7 5.3 47 45-91 211-272 (304)
66 2y9y_A Imitation switch protei 90.5 0.26 9E-06 50.8 5.4 60 47-108 124-184 (374)
67 4b4c_A Chromodomain-helicase-D 89.3 0.36 1.2E-05 45.4 5.0 42 47-88 8-53 (211)
68 2y9y_A Imitation switch protei 84.2 1.3 4.5E-05 45.6 6.1 45 46-90 228-287 (374)
69 3ny3_A E3 ubiquitin-protein li 77.6 1.1 3.8E-05 35.8 2.2 32 2-38 16-50 (75)
70 3nis_A E3 ubiquitin-protein li 69.8 1.5 5.2E-05 35.6 1.3 32 2-38 20-54 (82)
71 2olm_A Nucleoporin-like protei 59.9 5.8 0.0002 35.3 3.2 44 5-59 27-81 (140)
72 2ve8_A FTSK, DNA translocase F 58.4 13 0.00044 29.5 4.6 45 460-508 12-56 (73)
73 3kp7_A Transcriptional regulat 57.0 17 0.00059 31.0 5.9 56 446-507 27-82 (151)
74 4fx0_A Probable transcriptiona 56.6 12 0.00041 32.6 4.8 58 450-507 26-83 (148)
75 1ign_A Protein (RAP1); RAP1,ye 56.0 18 0.00061 35.1 6.1 25 68-92 173-197 (246)
76 2d1h_A ST1889, 109AA long hypo 55.5 22 0.00075 28.2 5.9 58 446-507 10-67 (109)
77 2owa_A Arfgap-like finger doma 54.5 4.7 0.00016 35.9 1.7 25 5-29 38-73 (138)
78 2bv6_A MGRA, HTH-type transcri 52.0 21 0.00072 29.9 5.5 56 447-507 27-82 (142)
79 2htj_A P fimbrial regulatory p 51.4 13 0.00043 29.0 3.6 43 465-507 3-45 (81)
80 2crr_A Stromal membrane-associ 50.5 5.3 0.00018 35.6 1.3 25 5-29 31-66 (141)
81 2fa5_A Transcriptional regulat 50.0 32 0.0011 29.5 6.4 57 446-507 38-94 (162)
82 3jw4_A Transcriptional regulat 48.1 40 0.0014 28.5 6.7 63 442-507 26-88 (148)
83 3ech_A MEXR, multidrug resista 47.4 37 0.0013 28.5 6.3 56 447-507 25-82 (142)
84 3bro_A Transcriptional regulat 47.2 34 0.0012 28.4 6.0 57 447-507 24-81 (141)
85 3boq_A Transcriptional regulat 46.7 32 0.0011 29.4 5.9 58 446-507 36-93 (160)
86 3k0l_A Repressor protein; heli 46.3 43 0.0015 28.9 6.7 58 445-507 34-91 (162)
87 3bja_A Transcriptional regulat 46.1 28 0.00097 28.8 5.3 53 450-507 26-78 (139)
88 3g3z_A NMB1585, transcriptiona 45.9 35 0.0012 28.7 5.9 56 447-507 21-76 (145)
89 3fm5_A Transcriptional regulat 45.2 26 0.00088 29.8 5.0 58 446-507 28-85 (150)
90 2dk5_A DNA-directed RNA polyme 44.9 25 0.00084 28.7 4.5 51 454-507 17-67 (91)
91 2fbh_A Transcriptional regulat 44.5 28 0.00096 29.1 5.1 56 448-507 28-83 (146)
92 3sub_A ADP-ribosylation factor 44.4 6.8 0.00023 35.8 1.0 25 5-29 24-59 (163)
93 4hbl_A Transcriptional regulat 43.4 30 0.001 29.5 5.1 55 448-507 32-86 (149)
94 2iqj_A Stromal membrane-associ 43.3 6.2 0.00021 34.9 0.6 25 5-29 29-64 (134)
95 1lj9_A Transcriptional regulat 43.3 25 0.00086 29.5 4.5 55 448-507 20-74 (144)
96 2fbi_A Probable transcriptiona 43.0 29 0.001 28.8 4.9 55 448-507 27-81 (142)
97 3oop_A LIN2960 protein; protei 41.9 25 0.00086 29.6 4.3 53 450-507 30-82 (143)
98 1sfx_A Conserved hypothetical 41.3 42 0.0014 26.3 5.4 55 448-507 11-65 (109)
99 2frh_A SARA, staphylococcal ac 41.0 31 0.0011 28.9 4.7 58 447-507 27-84 (127)
100 3e7l_A Transcriptional regulat 40.2 25 0.00086 26.2 3.6 27 51-78 18-44 (63)
101 3u2r_A Regulatory protein MARR 39.6 44 0.0015 29.0 5.7 61 443-507 32-93 (168)
102 1bja_A Transcription regulator 39.5 31 0.001 28.6 4.2 53 449-506 8-61 (95)
103 3s2w_A Transcriptional regulat 39.2 35 0.0012 29.3 4.9 57 446-507 39-95 (159)
104 2x4h_A Hypothetical protein SS 39.1 42 0.0014 28.2 5.4 54 453-507 9-62 (139)
105 2gxg_A 146AA long hypothetical 39.1 42 0.0014 28.0 5.3 56 446-507 26-81 (146)
106 3bj6_A Transcriptional regulat 38.8 45 0.0016 28.1 5.5 56 447-507 30-85 (152)
107 3bpv_A Transcriptional regulat 38.4 41 0.0014 27.8 5.1 55 448-507 20-74 (138)
108 2p57_A GTPase-activating prote 37.6 14 0.00046 33.1 1.9 25 5-29 39-74 (144)
109 1tbx_A ORF F-93, hypothetical 37.5 32 0.0011 27.3 4.1 51 452-507 3-57 (99)
110 3hsr_A HTH-type transcriptiona 36.9 27 0.00091 29.5 3.7 55 448-507 27-81 (140)
111 2vn2_A DNAD, chromosome replic 36.8 51 0.0017 28.1 5.5 57 450-507 25-82 (128)
112 2qww_A Transcriptional regulat 36.8 50 0.0017 27.9 5.5 56 447-507 31-86 (154)
113 1jgs_A Multiple antibiotic res 36.2 39 0.0013 28.0 4.6 55 448-507 25-79 (138)
114 3cdh_A Transcriptional regulat 35.9 54 0.0019 27.8 5.6 56 447-507 33-88 (155)
115 3e6m_A MARR family transcripti 35.2 51 0.0017 28.4 5.4 60 443-507 39-98 (161)
116 3r0a_A Putative transcriptiona 35.2 63 0.0021 27.1 5.8 57 446-507 15-73 (123)
117 1p4x_A Staphylococcal accessor 35.0 31 0.0011 33.1 4.2 57 447-507 24-81 (250)
118 3cjn_A Transcriptional regulat 34.8 47 0.0016 28.4 5.1 56 447-507 42-97 (162)
119 1weo_A Cellulose synthase, cat 34.7 11 0.00038 31.0 0.8 18 2-20 34-51 (93)
120 2a61_A Transcriptional regulat 34.5 44 0.0015 27.8 4.7 54 449-507 25-78 (145)
121 2k02_A Ferrous iron transport 34.4 39 0.0013 27.4 4.0 39 469-507 8-47 (87)
122 3dwd_A ADP-ribosylation factor 34.1 9.1 0.00031 34.4 0.2 25 5-29 40-75 (147)
123 4aik_A Transcriptional regulat 34.0 55 0.0019 28.3 5.4 52 451-507 25-77 (151)
124 3eco_A MEPR; mutlidrug efflux 34.0 55 0.0019 27.1 5.2 56 448-507 22-78 (139)
125 2rdp_A Putative transcriptiona 33.9 45 0.0015 28.0 4.7 56 447-507 32-87 (150)
126 2li6_A SWI/SNF chromatin-remod 33.8 40 0.0014 28.6 4.2 37 56-92 53-96 (116)
127 2pex_A Transcriptional regulat 33.8 40 0.0014 28.6 4.3 56 447-507 37-92 (153)
128 1xn7_A Hypothetical protein YH 33.2 43 0.0015 26.5 4.0 37 470-506 9-46 (78)
129 3deu_A Transcriptional regulat 32.6 42 0.0014 29.4 4.4 57 447-507 43-99 (166)
130 4b8x_A SCO5413, possible MARR- 32.4 32 0.0011 29.6 3.5 56 449-507 27-82 (147)
131 1s3j_A YUSO protein; structura 32.4 45 0.0015 28.2 4.5 56 447-507 27-82 (155)
132 3nrv_A Putative transcriptiona 31.7 61 0.0021 27.2 5.2 51 452-507 35-85 (148)
133 1ku9_A Hypothetical protein MJ 31.0 72 0.0025 26.4 5.5 57 447-507 16-72 (152)
134 2xb0_X Chromo domain-containin 30.5 84 0.0029 30.8 6.4 46 46-91 3-52 (270)
135 2k6x_A Sigma-A, RNA polymerase 29.6 73 0.0025 24.5 4.8 42 464-505 11-57 (72)
136 2crw_A ARF GAP 3, ADP-ribosyla 29.6 15 0.00051 33.0 0.8 25 5-29 31-66 (149)
137 3f3x_A Transcriptional regulat 29.5 74 0.0025 26.5 5.3 53 449-507 28-81 (144)
138 3dpt_A ROCO, RAB family protei 28.4 49 0.0017 33.3 4.5 54 453-506 11-68 (332)
139 2qvo_A Uncharacterized protein 28.0 29 0.00098 27.6 2.2 56 450-506 5-60 (95)
140 3jue_A Arfgap with coiled-coil 27.9 17 0.00057 36.9 1.0 25 5-29 47-82 (368)
141 1z91_A Organic hydroperoxide r 27.8 40 0.0014 28.3 3.2 55 448-507 31-85 (147)
142 3o47_A ADP-ribosylation factor 27.5 18 0.00061 35.9 1.0 41 5-54 39-90 (329)
143 1p4x_A Staphylococcal accessor 27.4 69 0.0024 30.6 5.2 57 447-507 148-205 (250)
144 3fh3_A Putative ECF-type sigma 27.4 83 0.0029 28.3 5.2 42 298-339 67-122 (158)
145 3bdd_A Regulatory protein MARR 27.4 92 0.0031 25.6 5.5 52 451-507 25-76 (142)
146 2zc2_A DNAD-like replication p 26.8 30 0.001 26.9 2.1 17 343-359 61-77 (78)
147 2eth_A Transcriptional regulat 25.8 57 0.002 27.7 3.9 53 450-507 37-89 (154)
148 1r7j_A Conserved hypothetical 24.4 66 0.0023 26.0 3.8 36 471-507 16-51 (95)
149 2d8v_A Zinc finger FYVE domain 24.3 22 0.00074 27.7 0.7 21 3-23 19-39 (67)
150 3tgn_A ADC operon repressor AD 24.0 89 0.003 26.0 4.8 49 453-507 34-82 (146)
151 2fxa_A Protease production reg 23.8 72 0.0024 29.2 4.4 55 448-507 39-93 (207)
152 2obp_A Putative DNA-binding pr 23.7 86 0.0029 25.8 4.4 55 453-507 12-67 (96)
153 2jrz_A Histone demethylase jar 23.5 1.1E+02 0.0037 25.9 5.1 37 55-91 43-90 (117)
154 2lm1_A Lysine-specific demethy 22.8 1.2E+02 0.004 25.0 5.2 37 55-91 47-94 (107)
155 1vz0_A PARB, chromosome partit 22.5 1.8E+02 0.0061 27.4 7.0 59 447-505 138-201 (230)
156 2fu4_A Ferric uptake regulatio 22.2 90 0.0031 23.8 4.1 33 475-507 32-69 (83)
157 2jxj_A Histone demethylase jar 22.1 80 0.0027 25.5 3.9 37 55-91 39-86 (96)
158 2hr3_A Probable transcriptiona 22.0 85 0.0029 26.1 4.3 49 454-507 32-81 (147)
159 2fbk_A Transcriptional regulat 21.8 1.2E+02 0.0039 26.7 5.3 57 447-507 59-117 (181)
160 2cxy_A BAF250B subunit, HBAF25 21.6 1.2E+02 0.004 25.9 5.0 37 55-91 54-101 (125)
161 1qgp_A Protein (double strande 21.4 65 0.0022 25.1 3.1 57 449-507 2-62 (77)
162 2nnn_A Probable transcriptiona 21.3 71 0.0024 26.3 3.6 49 454-507 35-83 (140)
163 1p6r_A Penicillinase repressor 21.2 89 0.003 23.8 3.9 49 454-507 6-58 (82)
164 2pg4_A Uncharacterized protein 21.1 1.2E+02 0.0042 23.6 4.8 36 472-507 25-62 (95)
165 2g9w_A Conserved hypothetical 20.8 83 0.0029 26.7 4.0 49 454-507 6-59 (138)
166 2i5u_A DNAD domain protein; st 20.2 38 0.0013 26.8 1.5 18 342-359 65-82 (83)
167 1umq_A Photosynthetic apparatu 20.2 85 0.0029 25.0 3.6 29 49-78 38-66 (81)
168 3cuo_A Uncharacterized HTH-typ 20.2 1.1E+02 0.0037 23.7 4.3 36 472-507 34-69 (99)
No 1
>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.18
Probab=99.93 E-value=5.2e-26 Score=197.00 Aligned_cols=85 Identities=29% Similarity=0.511 Sum_probs=82.0
Q ss_pred ccCCCCccccCCCcCCCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHC
Q 010514 424 IASSLEDWDISGFVGADLLSETEKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRK 503 (508)
Q Consensus 424 ~~~~~~~ldi~~~pg~~lLs~~Ek~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~ 503 (508)
.+++..+|||+++||+++||++|++||+++||+|.+||.+|++||+|+.++|.+++++|+.+|+||++|+++|||||+++
T Consensus 23 ~r~~~~~ldi~~~pg~~LLs~~E~~LCs~lrL~P~~YL~iK~~Li~E~~k~g~lkk~dA~~l~kID~~K~~rIydff~~~ 102 (108)
T 2cuj_A 23 GRRSAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIRE 102 (108)
T ss_dssp CCSSCCCCCCTTSTTTTTSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHTT
T ss_pred CCCCCCccCccCCCCchhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhcccHHHHHHHHHHHHHc
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q 010514 504 GIAQA 508 (508)
Q Consensus 504 Gwi~~ 508 (508)
|||.+
T Consensus 103 GWi~~ 107 (108)
T 2cuj_A 103 GYITK 107 (108)
T ss_dssp TSSCC
T ss_pred CCCCC
Confidence 99973
No 2
>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} SCOP: a.4.1.18 PDB: 2aqf_A
Probab=99.93 E-value=2.3e-26 Score=193.65 Aligned_cols=85 Identities=29% Similarity=0.511 Sum_probs=80.9
Q ss_pred ccCCCCccccCCCcCCCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHC
Q 010514 424 IASSLEDWDISGFVGADLLSETEKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRK 503 (508)
Q Consensus 424 ~~~~~~~ldi~~~pg~~lLs~~Ek~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~ 503 (508)
.+++..+|||+++||+++||++|++||+++||+|.+||.+|++||+|+.++|.+++++|+.+|+||++|+++|||||+++
T Consensus 5 ~~~~~~~ldi~~~p~~~lLs~~E~~LC~~lrL~P~~YL~~K~~li~E~~~~g~l~k~da~~~~kiD~~K~~~iydf~~~~ 84 (90)
T 2aqe_A 5 GRRSAPPLNLTGLPGTEKLNEKEKELCQVVRLVPGAYLEYKSALLNECHKQGGLRLAQARALIKIDVNKTRKIYDFLIRE 84 (90)
T ss_dssp CCCSSCCSSSSSSSSTTTSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSCCCHHHHHTTSSSSSHHHHHHHHHHHHT
T ss_pred CCCCCCCCCccCCCCchhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHcccHHHHHHHHHHHHHc
Confidence 35667899999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred CCCCC
Q 010514 504 GIAQA 508 (508)
Q Consensus 504 Gwi~~ 508 (508)
|||.+
T Consensus 85 Gwi~~ 89 (90)
T 2aqe_A 85 GYITK 89 (90)
T ss_dssp TSSCC
T ss_pred CCCCC
Confidence 99973
No 3
>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae}
Probab=99.92 E-value=5.2e-26 Score=190.70 Aligned_cols=83 Identities=33% Similarity=0.496 Sum_probs=79.1
Q ss_pred ccCCCCcc-ccCCCcCCCCCCHHHHHHHHHhCCCchHHHHHHHHHHHHHHh-CCCCCHHHhhhhhccCcccHHHHHHHHH
Q 010514 424 IASSLEDW-DISGFVGADLLSETEKRLCGEIKILPAHYLKMLEILSVEIYK-GNVSKKSDAHNLFKVEPNKVDRVYDMLV 501 (508)
Q Consensus 424 ~~~~~~~l-di~~~pg~~lLs~~Ek~LCs~lrL~P~~YL~iK~~LirE~~k-~g~l~~~~a~~l~kiD~~K~~rIydfl~ 501 (508)
+++.+.|+ ||+++||+++||++|++||+++||+|.+||.+|++||+|+++ +|.+++++|+.+|+||++|+++|||||+
T Consensus 4 ~~~~~~~l~di~~~p~~~lLs~~E~~LC~~lrL~P~~YL~~K~~Li~E~~k~g~~lkk~da~~~~kiD~~K~~~iydf~~ 83 (88)
T 2elj_A 4 GSSGNMTISDIQHAPDYALLSNDEQQLCIQLKILPKPYLVLKEVMFRELLKTGGNLSKSACRELLNIDPIKANRIYDFFQ 83 (88)
T ss_dssp CCCSCCCSHHHHTSTTCSSSCHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCCCCCccccccCCCchhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHcccHHHHHHHHHHHH
Confidence 45677899 999999999999999999999999999999999999999998 4569999999999999999999999999
Q ss_pred HCCCC
Q 010514 502 RKGIA 506 (508)
Q Consensus 502 ~~Gwi 506 (508)
++|||
T Consensus 84 ~~Gwi 88 (88)
T 2elj_A 84 SQNWM 88 (88)
T ss_dssp HTTCC
T ss_pred HcCCC
Confidence 99997
No 4
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=99.61 E-value=1.5e-15 Score=117.55 Aligned_cols=56 Identities=36% Similarity=0.805 Sum_probs=52.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhC-CCCHHHHHHHHHhhhcC
Q 010514 39 NLSFPLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVG-TKSKSQCIDHYNAIYMN 94 (508)
Q Consensus 39 ~~~~~~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~-~kt~~ec~~hy~~~yi~ 94 (508)
+.+||++...||++||.+|+++|+.||.+||..||.+|+ +||+.||+.||.++|++
T Consensus 2 ~~~~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~~~ 58 (58)
T 2elk_A 2 SSGSSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTYIE 58 (58)
T ss_dssp CSCCCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHccC
Confidence 346899999999999999999999999999999999999 89999999999999974
No 5
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=99.49 E-value=6.3e-14 Score=115.05 Aligned_cols=56 Identities=36% Similarity=0.793 Sum_probs=51.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhhhcCCCCCCC
Q 010514 44 LICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNSPCFPL 100 (508)
Q Consensus 44 ~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~yi~~~~~pl 100 (508)
.....||++|+.+||+||++|| +||..||++|++||+.||+.||.++|+++++..-
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~~i~d~~~~~ 71 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEN 71 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTSCCCCSSCCC
T ss_pred ccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHhccccccccc
Confidence 3467899999999999999999 9999999999999999999999999999987643
No 6
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.46 E-value=1.5e-13 Score=106.96 Aligned_cols=55 Identities=36% Similarity=0.684 Sum_probs=51.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhhhcCCC
Q 010514 42 FPLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNSP 96 (508)
Q Consensus 42 ~~~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~yi~~~ 96 (508)
.++....||++||.+|+++|+.||.+||..||.+|++||+.||+.||.++++.+.
T Consensus 4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~~ 58 (60)
T 1x41_A 4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGPS 58 (60)
T ss_dssp CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCSS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCCC
Confidence 4677889999999999999999999999999999999999999999999998764
No 7
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=99.16 E-value=4.5e-11 Score=89.97 Aligned_cols=47 Identities=17% Similarity=0.457 Sum_probs=44.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhhh
Q 010514 46 CPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIY 92 (508)
Q Consensus 46 ~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~y 92 (508)
...||++||.+|+++|..||.++|..||.+|++||+.||+.||.++.
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHc
Confidence 56899999999999999999889999999999999999999998753
No 8
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=99.15 E-value=4.9e-11 Score=89.81 Aligned_cols=47 Identities=21% Similarity=0.543 Sum_probs=43.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhh
Q 010514 45 ICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAI 91 (508)
Q Consensus 45 ~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~ 91 (508)
....||.+||.+|+++|..||.+||..||.+|++||..+|+.||.++
T Consensus 2 ~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~ 48 (52)
T 1gvd_A 2 IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNH 48 (52)
T ss_dssp CCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35789999999999999999988999999999999999999999865
No 9
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=99.11 E-value=1.1e-10 Score=88.27 Aligned_cols=46 Identities=24% Similarity=0.510 Sum_probs=43.5
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhC--CCCHHHHHHHHHhh
Q 010514 46 CPDWNADEEILLLEGIEMYGFGNWGEVSEHVG--TKSKSQCIDHYNAI 91 (508)
Q Consensus 46 ~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~--~kt~~ec~~hy~~~ 91 (508)
...||++||.+|+++|+.||.+||..||.+++ +||+.+|+++|.++
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~ 49 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTM 49 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 35799999999999999999999999999999 99999999999875
No 10
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=99.11 E-value=1.5e-10 Score=89.70 Aligned_cols=50 Identities=16% Similarity=0.364 Sum_probs=45.8
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhhh
Q 010514 43 PLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIY 92 (508)
Q Consensus 43 ~~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~y 92 (508)
.+....||++||.+|+++|..||.++|..||.+|++||..||+.||.++.
T Consensus 5 ~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 54 (60)
T 2d9a_A 5 SSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVL 54 (60)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHc
Confidence 35567899999999999999999889999999999999999999998653
No 11
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=1.7e-10 Score=93.31 Aligned_cols=52 Identities=13% Similarity=0.324 Sum_probs=47.4
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCC-----CCHHHHHHHhCCCCHHHHHHHHHhhhcC
Q 010514 43 PLICPDWNADEEILLLEGIEMYGF-----GNWGEVSEHVGTKSKSQCIDHYNAIYMN 94 (508)
Q Consensus 43 ~~~~~~Wta~Eel~LLe~i~~~G~-----gnW~~IA~~v~~kt~~ec~~hy~~~yi~ 94 (508)
.+....||++|+.+|+++|..||. ++|..||.+|++||..||+.||.+++..
T Consensus 5 ~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~ 61 (75)
T 2yum_A 5 SSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK 61 (75)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 355678999999999999999996 7899999999999999999999988754
No 12
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=3.6e-10 Score=90.29 Aligned_cols=50 Identities=20% Similarity=0.391 Sum_probs=46.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhhh
Q 010514 43 PLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIY 92 (508)
Q Consensus 43 ~~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~y 92 (508)
.+....||++||.+|+++|..||.+||..||.+|++||..||+.||.++.
T Consensus 6 ~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L 55 (70)
T 2dim_A 6 SGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWL 55 (70)
T ss_dssp CSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTS
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHc
Confidence 35567899999999999999999999999999999999999999998753
No 13
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=99.03 E-value=4e-10 Score=88.71 Aligned_cols=47 Identities=21% Similarity=0.536 Sum_probs=43.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhC--CCCHHHHHHHHHhh
Q 010514 45 ICPDWNADEEILLLEGIEMYGFGNWGEVSEHVG--TKSKSQCIDHYNAI 91 (508)
Q Consensus 45 ~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~--~kt~~ec~~hy~~~ 91 (508)
....||++||.+|+++|+.||.++|..||++++ +||+.||+++|.++
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 356899999999999999999999999999977 89999999999875
No 14
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=99.02 E-value=5.9e-10 Score=89.58 Aligned_cols=49 Identities=18% Similarity=0.466 Sum_probs=45.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhhh
Q 010514 43 PLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIY 92 (508)
Q Consensus 43 ~~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~y 92 (508)
.+....||++||.+|+++|..|| .+|..||.+|++||..+|+.||.+++
T Consensus 6 ~~~~~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~Rt~~q~k~r~~~~l 54 (72)
T 2cu7_A 6 SGYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYF 54 (72)
T ss_dssp SSCCCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred CcCCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999 59999999999999999999998775
No 15
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=99.00 E-value=5.6e-10 Score=88.94 Aligned_cols=49 Identities=22% Similarity=0.435 Sum_probs=45.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhC--CCCHHHHHHHHHhhh
Q 010514 44 LICPDWNADEEILLLEGIEMYGFGNWGEVSEHVG--TKSKSQCIDHYNAIY 92 (508)
Q Consensus 44 ~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~--~kt~~ec~~hy~~~y 92 (508)
.....||++||.+|+++|+.||.++|..||.+++ +||..||+.+|.++.
T Consensus 8 ~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l 58 (69)
T 1ity_A 8 RKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK 58 (69)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHc
Confidence 3467899999999999999999999999999999 999999999998764
No 16
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=98.93 E-value=8.7e-10 Score=92.99 Aligned_cols=59 Identities=22% Similarity=0.539 Sum_probs=49.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHhCCCCHHHHHHHHHhh-----hcCCCCCCCCCcc
Q 010514 46 CPDWNADEEILLLEGIEMYGF---GNWGEVSEHVGTKSKSQCIDHYNAI-----YMNSPCFPLPDLS 104 (508)
Q Consensus 46 ~~~Wta~Eel~LLe~i~~~G~---gnW~~IA~~v~~kt~~ec~~hy~~~-----yi~~~~~plp~~~ 104 (508)
...||++|+.+|++|+..||. ..|..||.+|++||.+||+.||..+ .+.+...|+|...
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~dv~~iesg~vp~P~y~ 74 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPFPNYR 74 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHSSCCC----
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhcCCCCCCCCC
Confidence 468999999999999999984 4599999999999999999999987 5667777777643
No 17
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.90 E-value=8.5e-10 Score=89.04 Aligned_cols=51 Identities=24% Similarity=0.519 Sum_probs=45.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHhCCCCHHHHHHHHHhhhcCC
Q 010514 44 LICPDWNADEEILLLEGIEMYGF---GNWGEVSEHVGTKSKSQCIDHYNAIYMNS 95 (508)
Q Consensus 44 ~~~~~Wta~Eel~LLe~i~~~G~---gnW~~IA~~v~~kt~~ec~~hy~~~yi~~ 95 (508)
+....||++|+.+|++||.+||. .+|..||.+|++||..||+.||..+ +.+
T Consensus 16 ~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L-~~d 69 (73)
T 2cqr_A 16 SAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL-VSG 69 (73)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH-HSS
T ss_pred cCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHH-HHc
Confidence 45678999999999999999984 4799999999999999999999865 443
No 18
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.85 E-value=3e-09 Score=85.61 Aligned_cols=46 Identities=28% Similarity=0.467 Sum_probs=42.8
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHhCCCCHHHHHHHHHhh
Q 010514 46 CPDWNADEEILLLEGIEMYGF---GNWGEVSEHVGTKSKSQCIDHYNAI 91 (508)
Q Consensus 46 ~~~Wta~Eel~LLe~i~~~G~---gnW~~IA~~v~~kt~~ec~~hy~~~ 91 (508)
...||++|+.+|.+||..|+. ++|+.||.+||+||.+||+.||..+
T Consensus 8 ~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMEN 56 (73)
T ss_dssp SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 468999999999999999986 5799999999999999999999876
No 19
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=6.6e-09 Score=81.92 Aligned_cols=49 Identities=20% Similarity=0.491 Sum_probs=43.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhhh
Q 010514 42 FPLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIY 92 (508)
Q Consensus 42 ~~~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~y 92 (508)
..+....||.+||.+|+++++.|| .+|..||..+ +||..||+.||.++.
T Consensus 5 P~~~k~~WT~eED~~L~~~~~~~g-~~W~~Ia~~~-gRt~~qcr~Rw~~~l 53 (66)
T 2din_A 5 SSGKKTEWSREEEEKLLHLAKLMP-TQWRTIAPII-GRTAAQCLEHYEFLL 53 (66)
T ss_dssp SSSSCCCCCHHHHHHHHHHHHHCT-TCHHHHHHHH-SSCHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcC-CCHHHHhccc-CcCHHHHHHHHHHHh
Confidence 346678999999999999999999 5999999955 599999999998653
No 20
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=98.76 E-value=1.1e-08 Score=84.63 Aligned_cols=45 Identities=20% Similarity=0.422 Sum_probs=42.6
Q ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHH----hCCCCHHHHHHHHHhhh
Q 010514 48 DWNADEEILLLEGIEMYGFGNWGEVSEH----VGTKSKSQCIDHYNAIY 92 (508)
Q Consensus 48 ~Wta~Eel~LLe~i~~~G~gnW~~IA~~----v~~kt~~ec~~hy~~~y 92 (508)
.||++||..|+++|++||.|+|..|+.. +.+||..+|+++|.++.
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnll 50 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLV 50 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHH
Confidence 6999999999999999999999999996 78999999999999865
No 21
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=98.24 E-value=8.7e-10 Score=92.33 Aligned_cols=51 Identities=27% Similarity=0.448 Sum_probs=46.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhh
Q 010514 40 LSFPLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAI 91 (508)
Q Consensus 40 ~~~~~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~ 91 (508)
.+.++..+.||.+|+.+|++++..|| .+|..||.+|++||..+|+.||.++
T Consensus 10 ~~p~~~~~~WT~eEd~~l~~~~~~~G-~~W~~IA~~l~gRt~~q~k~r~~~~ 60 (89)
T 2ltp_A 10 GRENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVGSKTVSQCKNFYFNY 60 (89)
Confidence 34567788999999999999999999 5999999999999999999999854
No 22
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.76 E-value=1e-08 Score=88.43 Aligned_cols=46 Identities=22% Similarity=0.463 Sum_probs=43.4
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhhh
Q 010514 47 PDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIY 92 (508)
Q Consensus 47 ~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~y 92 (508)
..||++||.+|+++|+.||.++|..||.+|++||+.||++||.++.
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHH
Confidence 5699999999999999999889999999999999999999998764
No 23
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.75 E-value=9.8e-09 Score=87.95 Aligned_cols=48 Identities=19% Similarity=0.516 Sum_probs=44.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhhh
Q 010514 45 ICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIY 92 (508)
Q Consensus 45 ~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~y 92 (508)
..+.||.+|+.+|+++|+.||.+||..||.+|++||+.+|+.||.++.
T Consensus 3 ~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 3 IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 50 (105)
T ss_dssp CCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhcc
Confidence 457899999999999999999889999999999999999999998864
No 24
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.73 E-value=5.5e-09 Score=81.94 Aligned_cols=38 Identities=26% Similarity=0.692 Sum_probs=35.9
Q ss_pred cEEEeccCCCCcccHHHhhcCCCCCCCCCCCCeeccCC
Q 010514 2 VRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDN 39 (508)
Q Consensus 2 ~ri~C~~C~~~~lC~~Cfs~G~e~~~H~~~H~y~vi~~ 39 (508)
+|++|++|+|||||..||+.|.+.+.|+++|+|+.+..
T Consensus 25 ~RykC~~C~d~DLC~~C~~~g~~~~~H~~~H~~~~~~t 62 (63)
T 2e5r_A 25 FRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKEYTS 62 (63)
T ss_dssp CEEEESSCSSCEECHHHHHHCCCCSSSCTTCCEEEECC
T ss_pred ceEEecCCCCchhHHHHHhCCCcCCCCCCCCCEEEEeC
Confidence 69999999999999999999999999999999998853
No 25
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.68 E-value=2.9e-08 Score=88.07 Aligned_cols=50 Identities=20% Similarity=0.540 Sum_probs=46.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhhh
Q 010514 43 PLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIY 92 (508)
Q Consensus 43 ~~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~y 92 (508)
.+....||.+||.+|+++|+.||.++|..||.+|++||..+|+.||.++.
T Consensus 24 ~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 73 (128)
T 1h8a_C 24 ELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHL 73 (128)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhc
Confidence 45578999999999999999999889999999999999999999998754
No 26
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.67 E-value=1.5e-08 Score=90.49 Aligned_cols=47 Identities=19% Similarity=0.344 Sum_probs=44.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhhh
Q 010514 46 CPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIY 92 (508)
Q Consensus 46 ~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~y 92 (508)
.+.||++||.+|+++|+.||.+||..||.+|++||+.+|++||.++.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l 48 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHL 48 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhcc
Confidence 46799999999999999999999999999999999999999998864
No 27
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=98.66 E-value=3.8e-08 Score=79.35 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=43.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHh
Q 010514 41 SFPLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNA 90 (508)
Q Consensus 41 ~~~~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~ 90 (508)
+..+....||++||.+|++++..|| .+|..||+++ +||..+|+.+|..
T Consensus 18 dP~i~k~~wT~EED~~L~~l~~~~G-~kW~~IA~~l-gRt~~q~knRw~~ 65 (73)
T 2llk_A 18 GDRNHVGKYTPEEIEKLKELRIKHG-NDWATIGAAL-GRSASSVKDRCRL 65 (73)
T ss_dssp -CCCCCCSSCHHHHHHHHHHHHHHS-SCHHHHHHHH-TSCHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHC-CCHHHHHHHh-CCCHHHHHHHHHH
Confidence 3456678999999999999999999 6799999999 9999999999974
No 28
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.63 E-value=5.1e-08 Score=75.82 Aligned_cols=44 Identities=18% Similarity=0.317 Sum_probs=41.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHh
Q 010514 46 CPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNA 90 (508)
Q Consensus 46 ~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~ 90 (508)
...||++|..+|++++.+|| .+|..||.+|++||..+|+.||..
T Consensus 12 ~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~ 55 (61)
T 2eqr_A 12 MNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYL 55 (61)
T ss_dssp CCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHH
Confidence 46799999999999999999 799999999999999999999964
No 29
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.58 E-value=6.8e-08 Score=85.63 Aligned_cols=48 Identities=15% Similarity=0.379 Sum_probs=44.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhhh
Q 010514 44 LICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIY 92 (508)
Q Consensus 44 ~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~y 92 (508)
.....||++||.+|+++|+.||. ||..||.+|++||+.+|++||.++.
T Consensus 9 ~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l 56 (126)
T 3osg_A 9 AKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYL 56 (126)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhc
Confidence 45678999999999999999995 9999999999999999999998865
No 30
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=98.56 E-value=9.4e-08 Score=81.78 Aligned_cols=48 Identities=15% Similarity=0.490 Sum_probs=44.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhh
Q 010514 43 PLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAI 91 (508)
Q Consensus 43 ~~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~ 91 (508)
.+....||.+||.+|++++..|| .+|..||.+|++||+.+|+.||..+
T Consensus 53 ~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~ 100 (105)
T 1gv2_A 53 EVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNST 100 (105)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHS-SCHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred cccccCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35678999999999999999999 7999999999999999999999754
No 31
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=98.55 E-value=1.2e-07 Score=81.66 Aligned_cols=48 Identities=23% Similarity=0.538 Sum_probs=44.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhh
Q 010514 43 PLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAI 91 (508)
Q Consensus 43 ~~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~ 91 (508)
.+..+.||.+||.+|++++..|| .+|..||.+|++||+.+|+.||..+
T Consensus 50 ~i~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l 97 (107)
T 2k9n_A 50 ALRTDPWSPEEDMLLDQKYAEYG-PKWNKISKFLKNRSDNNIRNRWMMI 97 (107)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHHHHhC-cCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 35578999999999999999999 6999999999999999999999754
No 32
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=98.50 E-value=1.5e-07 Score=83.45 Aligned_cols=48 Identities=21% Similarity=0.542 Sum_probs=44.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhh
Q 010514 43 PLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAI 91 (508)
Q Consensus 43 ~~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~ 91 (508)
.+....||.+||.+|++++..|| .+|..||.+|++||..+|+.||..+
T Consensus 59 ~~~~~~WT~eEd~~L~~~v~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~l 106 (126)
T 3osg_A 59 SISHTPWTAEEDALLVQKIQEYG-RQWAIIAKFFPGRTDIHIKNRWVTI 106 (126)
T ss_dssp TSCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHHH
T ss_pred ccccccCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 35567899999999999999999 8999999999999999999999764
No 33
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=98.49 E-value=1.8e-07 Score=82.51 Aligned_cols=48 Identities=23% Similarity=0.412 Sum_probs=44.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHh----CCCCHHHHHHHHHhhh
Q 010514 45 ICPDWNADEEILLLEGIEMYGFGNWGEVSEHV----GTKSKSQCIDHYNAIY 92 (508)
Q Consensus 45 ~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v----~~kt~~ec~~hy~~~y 92 (508)
....||.+||..|+++|++||.|+|..|+.+. .+||..+|+++|.++.
T Consensus 30 ~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnll 81 (122)
T 2roh_A 30 IRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLV 81 (122)
T ss_dssp CCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 35789999999999999999999999999985 7899999999999876
No 34
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=98.47 E-value=1.6e-07 Score=80.79 Aligned_cols=51 Identities=18% Similarity=0.328 Sum_probs=45.8
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHh----CCCCHHHHHHHHHhhhcC
Q 010514 44 LICPDWNADEEILLLEGIEMYGFGNWGEVSEHV----GTKSKSQCIDHYNAIYMN 94 (508)
Q Consensus 44 ~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v----~~kt~~ec~~hy~~~yi~ 94 (508)
.....||.+||..|+++|++||.|+|..|+... .+||..+|+++|.++.-.
T Consensus 11 r~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~ 65 (105)
T 2aje_A 11 RIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT 65 (105)
T ss_dssp CCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence 346789999999999999999999999999976 689999999999987643
No 35
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=98.46 E-value=2e-07 Score=83.14 Aligned_cols=49 Identities=10% Similarity=0.393 Sum_probs=45.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhhh
Q 010514 43 PLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIY 92 (508)
Q Consensus 43 ~~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~y 92 (508)
.+..+.||.+||.+|++++..|| ++|..||.+|++||..+|+.||.++.
T Consensus 51 ~~~~~~Wt~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~rw~~~l 99 (131)
T 3zqc_A 51 AVVKHAWTPEEDETIFRNYLKLG-SKWSVIAKLIPGRTDNAIKNRWNSSI 99 (131)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHSC-SCHHHHTTTSTTCCHHHHHHHHHHTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 35567899999999999999999 89999999999999999999998764
No 36
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=98.45 E-value=2.8e-07 Score=88.62 Aligned_cols=50 Identities=22% Similarity=0.478 Sum_probs=45.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhhh
Q 010514 42 FPLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIY 92 (508)
Q Consensus 42 ~~~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~y 92 (508)
++-....||.+|..+|++|+..|| .+|..||++||+||..||+.||.++.
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~k 178 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR 178 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 344567899999999999999999 79999999999999999999998654
No 37
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=98.42 E-value=3.2e-07 Score=81.34 Aligned_cols=48 Identities=15% Similarity=0.497 Sum_probs=44.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhh
Q 010514 43 PLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAI 91 (508)
Q Consensus 43 ~~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~ 91 (508)
.+..+.||.+||.+|++++..|| .+|..||.+|++||+.+|+.||..+
T Consensus 76 ~~~~~~WT~eEd~~L~~~~~~~G-~~W~~Ia~~l~gRt~~~~k~r~~~~ 123 (128)
T 1h8a_C 76 EVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAVKNHWNST 123 (128)
T ss_dssp SSCCSCCCHHHHHHHHHHHHHHC-SCHHHHGGGSTTCCHHHHHHHHHTT
T ss_pred ccccccCCHHHHHHHHHHHHHHC-cCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 35578899999999999999999 7999999999999999999999754
No 38
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.42 E-value=6.2e-07 Score=72.06 Aligned_cols=57 Identities=12% Similarity=0.325 Sum_probs=46.6
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHhCCCCHHHHHHHHHhh----hcCCCCCCCCC
Q 010514 45 ICPDWNADEEILLLEGIEMYGF---GNWGEVSEHVGTKSKSQCIDHYNAI----YMNSPCFPLPD 102 (508)
Q Consensus 45 ~~~~Wta~Eel~LLe~i~~~G~---gnW~~IA~~v~~kt~~ec~~hy~~~----yi~~~~~plp~ 102 (508)
....||.+|+.+|..|+.+|+- +.|+.||.++ +||.+||+.||..+ .+.+...|+|.
T Consensus 7 ~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~~~~~G~vp~P~ 70 (72)
T 2cqq_A 7 GAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSVTCSPGMVSGPS 70 (72)
T ss_dssp CCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSCCCCSCCCSCSC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhcCccCCCCCCCC
Confidence 3568999999999999999984 4599999999 59999999999875 23334566664
No 39
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.40 E-value=4.2e-07 Score=83.50 Aligned_cols=50 Identities=20% Similarity=0.519 Sum_probs=45.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhhh
Q 010514 43 PLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIY 92 (508)
Q Consensus 43 ~~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~y 92 (508)
.+....||.+||.+|+++|..||.++|..||.+|++||+.+|+.||.++.
T Consensus 55 ~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 55 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHL 104 (159)
T ss_dssp TCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTT
T ss_pred CcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 45678999999999999999999778999999999999999999998753
No 40
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=98.39 E-value=2.5e-07 Score=81.46 Aligned_cols=50 Identities=20% Similarity=0.363 Sum_probs=45.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHh----CCCCHHHHHHHHHhhhc
Q 010514 44 LICPDWNADEEILLLEGIEMYGFGNWGEVSEHV----GTKSKSQCIDHYNAIYM 93 (508)
Q Consensus 44 ~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v----~~kt~~ec~~hy~~~yi 93 (508)
.....||.+||..|+++|+.||.|+|..|+.+. .+||..+|+++|.++.-
T Consensus 15 r~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk 68 (121)
T 2juh_A 15 RIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH 68 (121)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence 446789999999999999999999999999996 68999999999998753
No 41
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=98.39 E-value=1.7e-07 Score=77.23 Aligned_cols=42 Identities=26% Similarity=0.478 Sum_probs=37.9
Q ss_pred cEEEeccCCC---CcccHHHhhcCCCCCCCCCCCCeeccCCCCCC
Q 010514 2 VRIKCAMCSD---FDLCVECFSVGAQIYPHESNHPYRVMDNLSFP 43 (508)
Q Consensus 2 ~ri~C~~C~~---~~lC~~Cfs~G~e~~~H~~~H~y~vi~~~~~~ 43 (508)
+|++|.+|+| ||||..||..|.+...|+.+|.|++|.....|
T Consensus 35 ~RykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~~~p 79 (82)
T 2fc7_A 35 VRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRSSGP 79 (82)
T ss_dssp CEEEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSCCCC
T ss_pred ceEECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCCCCC
Confidence 6999999999 99999999999999999999999998764433
No 42
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=98.21 E-value=2.6e-07 Score=78.60 Aligned_cols=42 Identities=29% Similarity=0.698 Sum_probs=35.2
Q ss_pred cEEEeccCCCCcccHHHhhcCCCCCCCCCCCCeeccCCCCCCCCCCCCCHHH
Q 010514 2 VRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADE 53 (508)
Q Consensus 2 ~ri~C~~C~~~~lC~~Cfs~G~e~~~H~~~H~y~vi~~~~~~~~~~~Wta~E 53 (508)
+|++|++|+|||||..||..|. | .+|.|..|.+. ...|++.|
T Consensus 45 ~RykC~~C~d~DLC~~C~~~~~----H-~~H~f~~i~~~-----~~~w~~~e 86 (98)
T 2dip_A 45 KCYKCTECIEYHLCQECFDSYC----H-LSHTFTFREKR-----NQKWRSLE 86 (98)
T ss_dssp CEEEESSSSSCEEEHHHHHTTS----G-GGSCEEECCSS-----SCCCEECC
T ss_pred CeEECCCCCCccHHHHHHccCC----C-CCCCeeEecCC-----CCCCcccc
Confidence 6999999999999999999984 8 79999988652 34587654
No 43
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=4.9e-06 Score=65.01 Aligned_cols=45 Identities=24% Similarity=0.437 Sum_probs=41.5
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHH-hCCCCHHHHHHHHH
Q 010514 44 LICPDWNADEEILLLEGIEMYGFGNWGEVSEH-VGTKSKSQCIDHYN 89 (508)
Q Consensus 44 ~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~-v~~kt~~ec~~hy~ 89 (508)
+....||++|-.++++|+.+|| -||..||.+ |++||..||+.+|.
T Consensus 7 ~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY 52 (63)
T 2yqk_A 7 GIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYY 52 (63)
T ss_dssp CCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHh
Confidence 4467899999999999999999 699999996 99999999999996
No 44
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=98.15 E-value=2.6e-06 Score=78.15 Aligned_cols=48 Identities=15% Similarity=0.490 Sum_probs=44.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhh
Q 010514 43 PLICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAI 91 (508)
Q Consensus 43 ~~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~ 91 (508)
.+....||.+|+.+|++++..|| .+|..||.+|++||..+|+.||..+
T Consensus 107 ~~~~~~WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~gRt~~~~knr~~~~ 154 (159)
T 1h89_C 107 EVKKTSWTEEEDRIIYQAHKRLG-NRWAEIAKLLPGRTDNAIKNHWNST 154 (159)
T ss_dssp TSCCSCCCHHHHHHHHHHHHHHC-SCHHHHHTTSTTCCHHHHHHHHHTT
T ss_pred cccccCCChHHHHHHHHHHHHHC-CCHHHHHHHCCCCCHHHHHHHHHHH
Confidence 35578999999999999999999 7999999999999999999999754
No 45
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=98.02 E-value=5.7e-06 Score=87.99 Aligned_cols=48 Identities=23% Similarity=0.493 Sum_probs=44.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhhh
Q 010514 44 LICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIY 92 (508)
Q Consensus 44 ~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~y 92 (508)
-....||.+|-.++++||..|| .||..||++|||||..||+.||.++.
T Consensus 378 ~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~k 425 (482)
T 2xag_B 378 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR 425 (482)
T ss_dssp CCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3467899999999999999999 79999999999999999999998644
No 46
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=97.95 E-value=1.3e-06 Score=69.89 Aligned_cols=44 Identities=18% Similarity=0.397 Sum_probs=39.4
Q ss_pred CCCCCHHHHHHHHHHHHHhCCC---CHHHHHHHhCCCCHHHHHHHHH
Q 010514 46 CPDWNADEEILLLEGIEMYGFG---NWGEVSEHVGTKSKSQCIDHYN 89 (508)
Q Consensus 46 ~~~Wta~Eel~LLe~i~~~G~g---nW~~IA~~v~~kt~~ec~~hy~ 89 (508)
...||.+|..+|-.||.+|.-+ .|+.||..||+||++||+.||.
T Consensus 20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~ 66 (74)
T 4eef_G 20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE 66 (74)
T ss_dssp --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence 4679999999999999999854 6999999999999999999994
No 47
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=97.94 E-value=1.3e-05 Score=63.88 Aligned_cols=44 Identities=27% Similarity=0.547 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHH-hCCCCHHHHHHHHHh
Q 010514 46 CPDWNADEEILLLEGIEMYGFGNWGEVSEH-VGTKSKSQCIDHYNA 90 (508)
Q Consensus 46 ~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~-v~~kt~~ec~~hy~~ 90 (508)
...||++|-.++.+|+..|| -||..|+.+ |++||..||+.+|..
T Consensus 8 ~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~ 52 (70)
T 2crg_A 8 MEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM 52 (70)
T ss_dssp SCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence 35799999999999999999 699999995 999999999999974
No 48
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=97.92 E-value=1.9e-05 Score=61.27 Aligned_cols=47 Identities=15% Similarity=0.305 Sum_probs=41.8
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHH---HhCCCCHHHHHHHHHhhh
Q 010514 45 ICPDWNADEEILLLEGIEMYGFGNWGEVSE---HVGTKSKSQCIDHYNAIY 92 (508)
Q Consensus 45 ~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~---~v~~kt~~ec~~hy~~~y 92 (508)
....||.+|+..|+++|++||- +|..|+. ++..||.-..+++|.++-
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~ 56 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLI 56 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHH
Confidence 4578999999999999999995 9999994 677899999999998764
No 49
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=97.85 E-value=2e-05 Score=66.41 Aligned_cols=44 Identities=18% Similarity=0.328 Sum_probs=41.3
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHh
Q 010514 46 CPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNA 90 (508)
Q Consensus 46 ~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~ 90 (508)
...||++|-.++.+++..|| .+|..||++|++||..||+.+|..
T Consensus 43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY~ 86 (94)
T 4a69_C 43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL 86 (94)
T ss_dssp TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHhc
Confidence 36899999999999999999 799999999999999999999963
No 50
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=97.81 E-value=6.6e-06 Score=61.92 Aligned_cols=31 Identities=32% Similarity=0.940 Sum_probs=27.3
Q ss_pred cEEEeccCCCCcccHHHhhcCCCCCCCCCCCCeeccC
Q 010514 2 VRIKCAMCSDFDLCVECFSVGAQIYPHESNHPYRVMD 38 (508)
Q Consensus 2 ~ri~C~~C~~~~lC~~Cfs~G~e~~~H~~~H~y~vi~ 38 (508)
+|++|++|+|||||..||+.|. | .|++..|.
T Consensus 18 ~R~~C~~C~dyDLC~~C~~~~~----H--~H~m~~~~ 48 (52)
T 1tot_A 18 TRWHCTVCEDYDLCINCYNTKS----H--THKMVKWG 48 (52)
T ss_dssp SEEEESSSSSCEECHHHHHHHC----C--CSSEEEEC
T ss_pred ceEEcCCCCCchhHHHHHhCCC----C--CCceEEec
Confidence 6999999999999999999975 6 68888764
No 51
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=97.64 E-value=3.2e-05 Score=75.03 Aligned_cols=49 Identities=10% Similarity=0.177 Sum_probs=42.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHhCCCC-----HHHHHHHhCCCCHHHHHHHHHhhh
Q 010514 44 LICPDWNADEEILLLEGIEMYGFGN-----WGEVSEHVGTKSKSQCIDHYNAIY 92 (508)
Q Consensus 44 ~~~~~Wta~Eel~LLe~i~~~G~gn-----W~~IA~~v~~kt~~ec~~hy~~~y 92 (508)
+....||.+||..||+++.++|-.+ |..||.+|++||..+|+.||..+-
T Consensus 6 ~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L 59 (246)
T 1ign_A 6 HNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYL 59 (246)
T ss_dssp --CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 3456899999999999999998432 999999999999999999998754
No 52
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3
Probab=96.58 E-value=0.0021 Score=49.35 Aligned_cols=46 Identities=13% Similarity=0.223 Sum_probs=40.1
Q ss_pred CCCCCHHHHHHHHHHHHHh--------CCCCHHHHHH-HhCCCCHHHHHHHHHhh
Q 010514 46 CPDWNADEEILLLEGIEMY--------GFGNWGEVSE-HVGTKSKSQCIDHYNAI 91 (508)
Q Consensus 46 ~~~Wta~Eel~LLe~i~~~--------G~gnW~~IA~-~v~~kt~~ec~~hy~~~ 91 (508)
+..||++||..|++.|..+ |-.-|+++|+ .+..+|-..|++||.+.
T Consensus 2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~ 56 (59)
T 1fex_A 2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKH 56 (59)
T ss_dssp CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHH
Confidence 3569999999999999999 3233999999 89899999999999884
No 53
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=96.52 E-value=0.0045 Score=51.84 Aligned_cols=45 Identities=13% Similarity=0.195 Sum_probs=41.1
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHh-----CCCCHHHHHHHHHhh
Q 010514 46 CPDWNADEEILLLEGIEMYGFGNWGEVSEHV-----GTKSKSQCIDHYNAI 91 (508)
Q Consensus 46 ~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v-----~~kt~~ec~~hy~~~ 91 (508)
..+||.+|+..|++.+++|| ..|--|++.. ++||.++.+.+|..+
T Consensus 30 ~~~WTkEETd~Lf~L~~~fd-lRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v 79 (93)
T 3hm5_A 30 DDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTT-TCHHHHHHHSCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhC-CCeeeehhhhccCCCCCCCHHHHHHHHHHH
Confidence 37999999999999999999 5899999998 479999999999764
No 54
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=96.41 E-value=0.0028 Score=62.98 Aligned_cols=33 Identities=27% Similarity=0.741 Sum_probs=29.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 010514 42 FPLICPDWNADEEILLLEGIEMYGFGNWGEVSE 74 (508)
Q Consensus 42 ~~~~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~ 74 (508)
.+-+.-.|+++|+..||-||..||||+|+.|-.
T Consensus 164 ~~~W~c~W~~~dD~~LLvGIykyGyG~We~Ir~ 196 (270)
T 2xb0_X 164 VQNWSSNWTKEEDEKLLIGVFKYGYGSWTQIRD 196 (270)
T ss_dssp CTTSSSCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCCCCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence 345667899999999999999999999999976
No 55
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=96.07 E-value=0.0059 Score=57.90 Aligned_cols=32 Identities=31% Similarity=0.696 Sum_probs=28.5
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHh
Q 010514 45 ICPDWNADEEILLLEGIEMYGFGNWGEVSEHV 76 (508)
Q Consensus 45 ~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v 76 (508)
+...||++||..||-||.+||+|+|+.|-.-.
T Consensus 133 ~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D~ 164 (211)
T 4b4c_A 133 FDIDWGKEDDSNLLIGIYEYGYGSWEMIKMDP 164 (211)
T ss_dssp SSSCCCHHHHHHHHHHHHHHCTTCHHHHHHCS
T ss_pred CCCCccHHHHHHHHHHHHHHCcCcHHHHHhCh
Confidence 35679999999999999999999999997743
No 56
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=95.95 E-value=0.013 Score=48.47 Aligned_cols=45 Identities=13% Similarity=0.369 Sum_probs=40.9
Q ss_pred CCCHHHHHHHHHHHHHhCC--CCHHHHHHHhCCCCHHHHHHHHHhhh
Q 010514 48 DWNADEEILLLEGIEMYGF--GNWGEVSEHVGTKSKSQCIDHYNAIY 92 (508)
Q Consensus 48 ~Wta~Eel~LLe~i~~~G~--gnW~~IA~~v~~kt~~ec~~hy~~~y 92 (508)
-||.+||..+|.+.++-|. .-|..||..+|+||++|+..+|.++.
T Consensus 35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm 81 (95)
T 1ug2_A 35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELM 81 (95)
T ss_dssp SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 5999999999999999984 36999999999999999999998753
No 57
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=95.86 E-value=0.0083 Score=60.49 Aligned_cols=48 Identities=19% Similarity=0.408 Sum_probs=42.5
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhhhcCC
Q 010514 47 PDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAIYMNS 95 (508)
Q Consensus 47 ~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~yi~~ 95 (508)
.+||..+-..++.|++.||-++|+.||..|++||++|+ .+|.+.|+..
T Consensus 111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV-~~Y~~vFw~r 158 (304)
T 1ofc_X 111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEV-IEYNAVFWER 158 (304)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHH-HHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHH-HHHHHHHHHh
Confidence 47999999999999999999999999999999999998 5555666554
No 58
>2fq3_A Transcription regulatory protein SWI3; four-helix bundle; 1.40A {Saccharomyces cerevisiae} SCOP: a.4.1.18
Probab=95.84 E-value=0.023 Score=48.55 Aligned_cols=69 Identities=12% Similarity=0.127 Sum_probs=60.9
Q ss_pred CCCCCHHHHHHHHHh------CCCchHHHHHHHHHHHHHHhCC--CCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 439 ADLLSETEKRLCGEI------KILPAHYLKMLEILSVEIYKGN--VSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 439 ~~lLs~~Ek~LCs~l------rL~P~~YL~iK~~LirE~~k~g--~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
.+..++-|++.+-.. .=.|..||.+...+|.-...+. .|+.++++..+.-|++-+.||+.||..-|+|.
T Consensus 22 ~~~Ih~iEk~~lPEfF~g~~~~ktpe~Yl~iRN~iI~~yr~nP~~yLT~t~~r~~l~gDv~~i~RVh~FLe~wGLIN 98 (104)
T 2fq3_A 22 LEKIHSIEVQSLPEFFTNRIPSKTPEVYMRYRNFMVNSYRLNPNEYFSVTTARRNVSGDAAALFRLHKFLTKWGLIN 98 (104)
T ss_dssp TTCCCHHHHHHCGGGCCSSCTTSCHHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHSCSCHHHHHHHHHHHHHTTSSS
T ss_pred cccCCHHHHHHChHHhcCCCCCCCHHHHHHHHHHHHHHHHhCCceeeeHHHHHHHccccHHHHHHHHHHHHHcCeec
Confidence 567889999998875 3469999999999999888754 69999999999999999999999999999994
No 59
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=95.16 E-value=0.012 Score=48.12 Aligned_cols=46 Identities=20% Similarity=0.350 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHHhCC---------CCHHHHHHHhC----CCCHHHHHHHHHhhh
Q 010514 47 PDWNADEEILLLEGIEMYGF---------GNWGEVSEHVG----TKSKSQCIDHYNAIY 92 (508)
Q Consensus 47 ~~Wta~Eel~LLe~i~~~G~---------gnW~~IA~~v~----~kt~~ec~~hy~~~y 92 (508)
..||.+|.++||++...... .-|+.||+.|. .+|+.||+..|.++-
T Consensus 5 ~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~ 63 (86)
T 2ebi_A 5 ETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL 63 (86)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 57999999999999864221 15999999875 599999999998753
No 60
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=94.70 E-value=0.063 Score=44.81 Aligned_cols=45 Identities=13% Similarity=0.203 Sum_probs=40.6
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhC-----CCCHHHHHHHHHhh
Q 010514 46 CPDWNADEEILLLEGIEMYGFGNWGEVSEHVG-----TKSKSQCIDHYNAI 91 (508)
Q Consensus 46 ~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~-----~kt~~ec~~hy~~~ 91 (508)
..+||.+|+..|++.++.|+ ..|--|++... .||.++-++||..+
T Consensus 30 ~~~WT~eETd~LfdLc~~fd-lRw~vI~DRy~~~~~~~RtvEdLK~RYY~V 79 (93)
T 4iej_A 30 DDAWTKAETDHLFDLSRRFD-LRFVVIHDRYDHQQFKKRSVEDLKERYYHI 79 (93)
T ss_dssp BTTBCHHHHHHHHHHHHHTT-TCHHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcC-CCeEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence 47899999999999999999 58999999864 69999999999865
No 61
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=94.23 E-value=0.1 Score=40.59 Aligned_cols=48 Identities=8% Similarity=0.191 Sum_probs=41.0
Q ss_pred CCCCCHHHHHHHHHHHHHhCCCC--HHHHHHHhC--CCCHHHHHHHHHhhhc
Q 010514 46 CPDWNADEEILLLEGIEMYGFGN--WGEVSEHVG--TKSKSQCIDHYNAIYM 93 (508)
Q Consensus 46 ~~~Wta~Eel~LLe~i~~~G~gn--W~~IA~~v~--~kt~~ec~~hy~~~yi 93 (508)
+-.||.+....+++||+++|... |..|.+.|+ +-|..++..|..+|.+
T Consensus 7 r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~ 58 (64)
T 1irz_A 7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV 58 (64)
T ss_dssp SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999433 789999988 4699999999987754
No 62
>2dce_A KIAA1915 protein; swirm domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.93 E-value=0.073 Score=45.92 Aligned_cols=70 Identities=20% Similarity=0.219 Sum_probs=59.7
Q ss_pred CCCCCCHHHHHHHHHh-----CCCchHHHHHHHHHHHHHHhC--CCCCHHHhhhhhc--cCcccHHHHHHHHHHCCCCC
Q 010514 438 GADLLSETEKRLCGEI-----KILPAHYLKMLEILSVEIYKG--NVSKKSDAHNLFK--VEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 438 g~~lLs~~Ek~LCs~l-----rL~P~~YL~iK~~LirE~~k~--g~l~~~~a~~l~k--iD~~K~~rIydfl~~~Gwi~ 507 (508)
..+..++-|++.+-.. .=-|..||.+...+|.-...+ -.|+...|+..++ .|++-+.||+.||...|+|.
T Consensus 23 ~~~~ih~iEk~~lPefF~g~~~ktpe~Yl~iRN~iI~~yr~np~~yLT~t~~rr~L~~~gDv~~i~RVh~FLe~wGLIN 101 (111)
T 2dce_A 23 DRNIIQEEEKQAIPEFFEGRQAKTPERYLKIRNYILDQWEICKPKYLNKTSVRPGLKNCGDVNCIGRIHTYLELIGAIN 101 (111)
T ss_dssp CSSCCCHHHHTTSGGGGSCCSSCCHHHHHHHHHHHHHHHHHHTTSCCCGGGTTTTTSSSSCHHHHHHHHHHHHHHSSSS
T ss_pred CcccCCHHHHHhChHHhcCCcccCHHHHHHHHHHHHHHHHhCCcceeeHHHHHHhcccccCHHHHHHHHHHHHHcCeee
Confidence 3577888898888775 448999999999999887753 4699999998884 89999999999999999994
No 63
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=93.81 E-value=0.011 Score=62.99 Aligned_cols=46 Identities=13% Similarity=0.401 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHhCCCCHHHHHHHHHhh
Q 010514 45 ICPDWNADEEILLLEGIEMYGFGNWGEVSEHVGTKSKSQCIDHYNAI 91 (508)
Q Consensus 45 ~~~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~kt~~ec~~hy~~~ 91 (508)
+...||.+|..+|.+++..|| .||..|+.+|++||..+|+.+|+..
T Consensus 188 ~~d~WT~eE~~lFe~al~~yG-KdF~~I~~~lp~Ksv~e~V~yYY~W 233 (482)
T 2xag_B 188 FPDEWTVEDKVLFEQAFSFHG-KTFHRIQQMLPDKSIASLVKFYYSW 233 (482)
T ss_dssp -----------------------------------------------
T ss_pred cccccCHHHHHHHHHHHHHcC-ccHHHHHHHcCCCCHHHHHHHhccc
Confidence 345899999999999999999 8999999999999999999998653
No 64
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}
Probab=92.55 E-value=0.014 Score=45.86 Aligned_cols=43 Identities=12% Similarity=0.339 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHHHhCC--CCHHHHHHHhCCCCHHHHHHHHHhh
Q 010514 48 DWNADEEILLLEGIEMYGF--GNWGEVSEHVGTKSKSQCIDHYNAI 91 (508)
Q Consensus 48 ~Wta~Eel~LLe~i~~~G~--gnW~~IA~~v~~kt~~ec~~hy~~~ 91 (508)
-||.+||..+|..+.+-|. .-|..||..+ +||++|+..+|.+.
T Consensus 16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~L 60 (70)
T 2lr8_A 16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQL 60 (70)
Confidence 5999999999999999884 2599999999 79999999999875
No 65
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=91.58 E-value=0.18 Score=50.70 Aligned_cols=47 Identities=13% Similarity=0.257 Sum_probs=39.9
Q ss_pred CCCCCCHHHHHHHHHHHHHhCC---CCHHHHHH------------HhCCCCHHHHHHHHHhh
Q 010514 45 ICPDWNADEEILLLEGIEMYGF---GNWGEVSE------------HVGTKSKSQCIDHYNAI 91 (508)
Q Consensus 45 ~~~~Wta~Eel~LLe~i~~~G~---gnW~~IA~------------~v~~kt~~ec~~hy~~~ 91 (508)
.+..||.+|+..||=++..||+ |+|+.|.. ++-+||+.|+..|...+
T Consensus 211 k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~tL 272 (304)
T 1ofc_X 211 KGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTL 272 (304)
T ss_dssp CCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHH
T ss_pred CCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHHH
Confidence 3568999999999999999999 99999974 44589999988777544
No 66
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=90.53 E-value=0.26 Score=50.82 Aligned_cols=60 Identities=13% Similarity=0.218 Sum_probs=49.8
Q ss_pred CCCCHHHHHHHHHHHHHhCCCCHHHHHHHhC-CCCHHHHHHHHHhhhcCCCCCCCCCcccccc
Q 010514 47 PDWNADEEILLLEGIEMYGFGNWGEVSEHVG-TKSKSQCIDHYNAIYMNSPCFPLPDLSHVMG 108 (508)
Q Consensus 47 ~~Wta~Eel~LLe~i~~~G~gnW~~IA~~v~-~kt~~ec~~hy~~~yi~~~~~plp~~~~~~~ 108 (508)
.+||..+=..|+.|+++||-++-+.||..|+ +||++|++ .|.+.|.... --+.+...+|+
T Consensus 124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~-~Y~~vFw~Ry-~Ei~d~erii~ 184 (374)
T 2y9y_A 124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVR-AYAKAFWSNI-ERIEDYEKYLK 184 (374)
T ss_dssp CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHH-HHHHHHHHTC-SSCSCCTTTHH
T ss_pred cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHH-HHHHHHHHhh-hhhccHHHHHH
Confidence 4899999999999999999999999999998 89999988 7888887753 23455555443
No 67
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=89.34 E-value=0.36 Score=45.45 Aligned_cols=42 Identities=10% Similarity=0.149 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHHHhC--CCCHHHHHHHh--CCCCHHHHHHHH
Q 010514 47 PDWNADEEILLLEGIEMYG--FGNWGEVSEHV--GTKSKSQCIDHY 88 (508)
Q Consensus 47 ~~Wta~Eel~LLe~i~~~G--~gnW~~IA~~v--~~kt~~ec~~hy 88 (508)
.+||..|-..|+.|+..|| .+.|++|+... ..||.++++..+
T Consensus 8 ~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~ 53 (211)
T 4b4c_A 8 KGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLG 53 (211)
T ss_dssp CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHH
Confidence 5899999999999999999 67899999875 479999977644
No 68
>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A
Probab=84.24 E-value=1.3 Score=45.61 Aligned_cols=45 Identities=13% Similarity=0.263 Sum_probs=38.2
Q ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHh------------CCCCHHHHHHHHHh
Q 010514 46 CPDWNADEEILLLEGIEMYGF---GNWGEVSEHV------------GTKSKSQCIDHYNA 90 (508)
Q Consensus 46 ~~~Wta~Eel~LLe~i~~~G~---gnW~~IA~~v------------~~kt~~ec~~hy~~ 90 (508)
...||.+||..||=+|..||+ |+|+.|-..| -+||+.|+..|...
T Consensus 228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc~t 287 (374)
T 2y9y_A 228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRGNT 287 (374)
T ss_dssp CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHHH
Confidence 568999999999999999999 9999996654 37888887766654
No 69
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=77.63 E-value=1.1 Score=35.83 Aligned_cols=32 Identities=34% Similarity=0.779 Sum_probs=25.0
Q ss_pred cEEEeccCC---CCcccHHHhhcCCCCCCCCCCCCeeccC
Q 010514 2 VRIKCAMCS---DFDLCVECFSVGAQIYPHESNHPYRVMD 38 (508)
Q Consensus 2 ~ri~C~~C~---~~~lC~~Cfs~G~e~~~H~~~H~y~vi~ 38 (508)
+.++|.+|. -..||..||-.+. |+ +|.|.+..
T Consensus 16 ~~Y~C~~C~~d~tc~lC~~CF~~~~----H~-gH~~~~~~ 50 (75)
T 3ny3_A 16 PTYSCRDCAVDPTCVLCMECFLGSI----HR-DHRYRMTT 50 (75)
T ss_dssp EEEEETTTBSSTTCCBCHHHHHTSG----GG-GSCEEEEE
T ss_pred EEEECccCCCCCCeeEChHHCCCCC----cC-CceEEEEE
Confidence 468999995 2569999999875 74 58898864
No 70
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=69.77 E-value=1.5 Score=35.61 Aligned_cols=32 Identities=28% Similarity=0.551 Sum_probs=24.6
Q ss_pred cEEEeccCC---CCcccHHHhhcCCCCCCCCCCCCeeccC
Q 010514 2 VRIKCAMCS---DFDLCVECFSVGAQIYPHESNHPYRVMD 38 (508)
Q Consensus 2 ~ri~C~~C~---~~~lC~~Cfs~G~e~~~H~~~H~y~vi~ 38 (508)
+.++|.+|. -..||..||-.+. |. +|.|.+..
T Consensus 20 ~~Y~C~~C~~d~tcvlC~~CF~~s~----H~-gH~~~~~~ 54 (82)
T 3nis_A 20 PLYRCHECGCDDTCVLCIHCFNPKD----HV-NHHVCTDI 54 (82)
T ss_dssp EEEEETTTBSSTTCCBCTTTCCGGG----GT-TSCEEEEE
T ss_pred EEEEeeccCCCCCceEchhhCCCCC----cC-CceEEEEE
Confidence 468999995 3569999998865 74 68888754
No 71
>2olm_A Nucleoporin-like protein RIP; arfgap, GTPase-activating protein, REV-interacting protein, human immunodeficiency virus, AIDS, structural genomics; 1.48A {Homo sapiens} PDB: 2d9l_A
Probab=59.94 E-value=5.8 Score=35.31 Aligned_cols=44 Identities=23% Similarity=0.477 Sum_probs=28.4
Q ss_pred EeccCC-----------CCcccHHHhhcCCCCCCCCCCCCeeccCCCCCCCCCCCCCHHHHHHHHH
Q 010514 5 KCAMCS-----------DFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEEILLLE 59 (508)
Q Consensus 5 ~C~~C~-----------~~~lC~~Cfs~G~e~~~H~~~H~y~vi~~~~~~~~~~~Wta~Eel~LLe 59 (508)
.|++|. ++.+|+.|-..-..+|.| +..+-+. -..|+.++ +.+|.
T Consensus 27 ~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~LG~~---s~VrSl~-------ld~w~~~~-l~~m~ 81 (140)
T 2olm_A 27 KCFDCDQRGPTYVNMTVGSFVCTSCSGSLRGLNPP---HRVKSIS-------MTTFTQQE-IEFLQ 81 (140)
T ss_dssp SCTTTCSSCCCEEETTTTEEECHHHHHHHTTSSSC---CCEEETT-------TCCCCHHH-HHHHH
T ss_pred cCCCCCCCCCCceeeccCEEEchhccchhccCCCc---ceeeecC-------CCCCCHHH-HHHHH
Confidence 599995 356999999987777766 3344332 24699764 44433
No 72
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=58.41 E-value=13 Score=29.53 Aligned_cols=45 Identities=13% Similarity=0.286 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCCC
Q 010514 460 YLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQA 508 (508)
Q Consensus 460 YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~~ 508 (508)
|-..++.++ ..+..+.+-.+.-|+|..|++.+|.|-|...|+|+|
T Consensus 12 y~~A~~~V~----~~~~aS~S~lQR~lrIGYnRAArlid~lE~~GiVgp 56 (73)
T 2ve8_A 12 YDEAVRFVT----ESRRASISAVQRKLKIGYNRAARMIEAMEMAGVVTP 56 (73)
T ss_dssp HHHHHHHHH----HHCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSBCC
T ss_pred HHHHHHHHH----hcCCccHHHHHHHHccChHHHHHHHHHHHHCCcCCc
Confidence 444444443 346667777778899999999999999999999975
No 73
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=57.05 E-value=17 Score=30.97 Aligned_cols=56 Identities=14% Similarity=0.038 Sum_probs=46.4
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 446 EKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 446 Ek~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
-...+..++|.|..|..+.-+ .+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 27 ~~~~~~~~~lt~~q~~iL~~l------~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~ 82 (151)
T 3kp7_A 27 LKDLQTEYGISAEQSHVLNML------SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVK 82 (151)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH------HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEE
T ss_pred HHHHhhcCCCCHHHHHHHHHH------HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 345567789999999887655 34678888877788999999999999999999984
No 74
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=56.65 E-value=12 Score=32.57 Aligned_cols=58 Identities=16% Similarity=0.146 Sum_probs=41.9
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 450 CGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 450 Cs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
...++|.|.+|..+--+...+-..+|.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 26 l~~~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr 83 (148)
T 4fx0_A 26 LRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDGLVR 83 (148)
T ss_dssp HGGGTCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC
T ss_pred HHHcCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 4578999999987766554444445678888888889999999999999999999983
No 75
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=56.02 E-value=18 Score=35.08 Aligned_cols=25 Identities=8% Similarity=0.215 Sum_probs=22.9
Q ss_pred CHHHHHHHhCCCCHHHHHHHHHhhh
Q 010514 68 NWGEVSEHVGTKSKSQCIDHYNAIY 92 (508)
Q Consensus 68 nW~~IA~~v~~kt~~ec~~hy~~~y 92 (508)
-|..||++..++|....+++|.++-
T Consensus 173 ~fk~ia~~~P~HT~~SWRdRyrKfl 197 (246)
T 1ign_A 173 FFKHFAEEHAAHTENAWRDRFRKFL 197 (246)
T ss_dssp HHHHHHHHTTTSCHHHHHHHHHHTH
T ss_pred HHHHHHHHCCCCChhhHHHHHHHHH
Confidence 5999999999999999999998754
No 76
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=55.50 E-value=22 Score=28.20 Aligned_cols=58 Identities=14% Similarity=0.228 Sum_probs=46.4
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 446 EKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 446 Ek~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
+..+....+|.|..+..+..++ ..++.++..+.-..+.+...-+.++.+-|.+.|||.
T Consensus 10 ~~~~~~~~~l~~~~~~~l~~l~----~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~ 67 (109)
T 2d1h_A 10 KDEIRCCYKITDTDVAVLLKMV----EIEKPITSEELADIFKLSKTTVENSLKKLIELGLVV 67 (109)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHH----HHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhhcCCHHHHHHHHHHH----HcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeE
Confidence 4455667889998877765544 236778988888889999999999999999999984
No 77
>2owa_A Arfgap-like finger domain containing protein; zinc finger protein, cysteine-rich motif, GTPase activation; 2.00A {Cryptosporidium parvum iowa II}
Probab=54.50 E-value=4.7 Score=35.87 Aligned_cols=25 Identities=24% Similarity=0.505 Sum_probs=19.7
Q ss_pred EeccCC-----------CCcccHHHhhcCCCCCCCC
Q 010514 5 KCAMCS-----------DFDLCVECFSVGAQIYPHE 29 (508)
Q Consensus 5 ~C~~C~-----------~~~lC~~Cfs~G~e~~~H~ 29 (508)
.|++|. ++.+|+.|-..-..+|.|-
T Consensus 38 ~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hi 73 (138)
T 2owa_A 38 TCFDCESRNPTWLSLSFAVFICLNCSSDHRKMGVHI 73 (138)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHTTCTTT
T ss_pred cCCCCcCCCCCeEEecCCEEEhHhhhHHHhCCCCCC
Confidence 599995 3569999999877777774
No 78
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=51.98 E-value=21 Score=29.94 Aligned_cols=56 Identities=4% Similarity=0.154 Sum_probs=45.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 447 KRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 447 k~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
.+.+..++|.|..|..+..+ ..+|.++..+....+.++...+.++.+-|++.|||.
T Consensus 27 ~~~~~~~~l~~~~~~iL~~l-----~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~ 82 (142)
T 2bv6_A 27 NKVFKKYNLTYPQFLVLTIL-----WDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIK 82 (142)
T ss_dssp HHTHHHHTCCHHHHHHHHHH-----HHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEE
T ss_pred HHHhhhcCCCHHHHHHHHHH-----HHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 45567889999888766543 345678888888888999999999999999999984
No 79
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=51.44 E-value=13 Score=29.01 Aligned_cols=43 Identities=14% Similarity=0.143 Sum_probs=35.0
Q ss_pred HHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 465 EILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 465 ~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
..++.-...+|.++..+..+.+.+...-+.+..+.|.+.|+|.
T Consensus 3 ~~Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~ 45 (81)
T 2htj_A 3 NEILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQ 45 (81)
T ss_dssp HHHHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3444444556888998888889999999999999999999984
No 80
>2crr_A Stromal membrane-associated protein SMAP1B; arfgap domain, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.46 E-value=5.3 Score=35.62 Aligned_cols=25 Identities=24% Similarity=0.610 Sum_probs=18.9
Q ss_pred EeccCC-----------CCcccHHHhhcCCCCCCCC
Q 010514 5 KCAMCS-----------DFDLCVECFSVGAQIYPHE 29 (508)
Q Consensus 5 ~C~~C~-----------~~~lC~~Cfs~G~e~~~H~ 29 (508)
.|++|. ++.+|+.|-..-..++.|.
T Consensus 31 ~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hi 66 (141)
T 2crr_A 31 YCADCEAKGPRWASWNIGVFICIRCAGIHRNLGVHI 66 (141)
T ss_dssp SCSSSCCSSCCSEETTTTEECCHHHHHHHHHHCTTT
T ss_pred cCCCCCCCCCCeEEeccCeEEhhhhhHhHhcCCCCC
Confidence 599995 3569999998766666664
No 81
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=50.01 E-value=32 Score=29.52 Aligned_cols=57 Identities=12% Similarity=0.086 Sum_probs=46.1
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 446 EKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 446 Ek~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
.+.|...++|.|..|..+..+ ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 38 ~~~l~~~~~lt~~~~~iL~~l-----~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~ 94 (162)
T 2fa5_A 38 AKVYGDRYGMAIPEWRVITIL-----ALYPGSSASEVSDRTAMDKVAVSRAVARLLERGFIR 94 (162)
T ss_dssp HHHHHHHHCCCHHHHHHHHHH-----HHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCCCHHHHHHHHHH-----HhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 445557789999998766543 236778888888888999999999999999999984
No 82
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=48.11 E-value=40 Score=28.47 Aligned_cols=63 Identities=13% Similarity=0.107 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 442 LSETEKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 442 Ls~~Ek~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
+...=...+..++|.|..|..+.-+.- ...|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 26 ~~~~~~~~~~~~glt~~q~~vL~~l~~---~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 88 (148)
T 3jw4_A 26 LKTSADARLAELGLNSQQGRMIGYIYE---NQESGIIQKDLAQFFGRRGASITSMLQGLEKKGYIE 88 (148)
T ss_dssp TTHHHHHHHHHTTCCHHHHHHHHHHHH---HTTTCCCHHHHHHC------CHHHHHHHHHHTTSBC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHh---CCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 444455667789999999987765431 112678888888888999999999999999999995
No 83
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=47.40 E-value=37 Score=28.46 Aligned_cols=56 Identities=9% Similarity=0.030 Sum_probs=42.6
Q ss_pred HHHHHH--hCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 447 KRLCGE--IKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 447 k~LCs~--lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
...+.. ++|.|..|..+.-+ ...|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 25 ~~~l~~~~~~lt~~~~~vL~~l-----~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~ 82 (142)
T 3ech_A 25 QSELDCQRLDLTPPDVHVLKLI-----DEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVR 82 (142)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHH-----HHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEE
T ss_pred HHHHhhccCCCCHHHHHHHHHH-----HhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe
Confidence 345566 89999999877644 345678888888888999999999999999999984
No 84
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=47.24 E-value=34 Score=28.42 Aligned_cols=57 Identities=7% Similarity=0.046 Sum_probs=44.7
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCC-CCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 447 KRLCGEIKILPAHYLKMLEILSVEIYKGN-VSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 447 k~LCs~lrL~P~~YL~iK~~LirE~~k~g-~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
...+..++|.|..|..+.-+. ..+| .++..+....+.++..-+.++.+-|++.|||.
T Consensus 24 ~~~~~~~~lt~~~~~iL~~l~----~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~ 81 (141)
T 3bro_A 24 DIFAKKYDLTGTQMTIIDYLS----RNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLY 81 (141)
T ss_dssp HHHHHTTTCCHHHHHHHHHHH----HTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH----HCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCCEE
Confidence 345567899999888765432 1232 68888888889999999999999999999984
No 85
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=46.70 E-value=32 Score=29.44 Aligned_cols=58 Identities=16% Similarity=0.235 Sum_probs=46.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 446 EKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 446 Ek~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
++.|...++|.|..|..+.-+- ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 36 ~~~l~~~~~l~~~~~~iL~~L~----~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~ 93 (160)
T 3boq_A 36 NRQLLDETGLSLAKFDAMAQLA----RNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVV 93 (160)
T ss_dssp HHHHHHHHSCCHHHHHHHHHHH----HCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEE
T ss_pred HHHHHHhcCCCHHHHHHHHHHH----HcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 4445557899999998775441 245678888888889999999999999999999984
No 86
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=46.28 E-value=43 Score=28.86 Aligned_cols=58 Identities=7% Similarity=0.103 Sum_probs=46.4
Q ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 445 TEKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 445 ~Ek~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
.=......++|.|..|..+.-+ ...|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 34 ~~~~~l~~~glt~~q~~iL~~l-----~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 91 (162)
T 3k0l_A 34 YLTEHLSALEISLPQFTALSVL-----AAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIE 91 (162)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHH-----HHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEE
T ss_pred HHHHHhhhcCCCHHHHHHHHHH-----HHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeE
Confidence 3344456789999998877543 345678888888888999999999999999999984
No 87
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=46.09 E-value=28 Score=28.78 Aligned_cols=53 Identities=11% Similarity=0.104 Sum_probs=43.0
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 450 CGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 450 Cs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
+...+|.|..|..+..+ ..+|.++..+....+.++...+.++.+-|++.|||.
T Consensus 26 ~~~~~l~~~~~~iL~~l-----~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~ 78 (139)
T 3bja_A 26 IEQYDISYVQFGVIQVL-----AKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVM 78 (139)
T ss_dssp TGGGTCCHHHHHHHHHH-----HHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEE
T ss_pred hhhcCCCHHHHHHHHHH-----HHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCee
Confidence 45678888888766543 346778888888889999999999999999999984
No 88
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=45.93 E-value=35 Score=28.70 Aligned_cols=56 Identities=9% Similarity=0.194 Sum_probs=45.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 447 KRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 447 k~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
...+..++|.|..|..+..+. ..|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 21 ~~~~~~~~lt~~q~~iL~~l~-----~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 76 (145)
T 3g3z_A 21 DKWIGQQDLNYNLFAVLYTLA-----TEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIE 76 (145)
T ss_dssp HHHHHTTTCCHHHHHHHHHHH-----HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 456778999999998776543 33558888877788999999999999999999984
No 89
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=45.23 E-value=26 Score=29.80 Aligned_cols=58 Identities=9% Similarity=0.126 Sum_probs=45.2
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 446 EKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 446 Ek~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
=.+.+..++|.|..|..+.-+. ..++.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 28 ~~~~l~~~glt~~q~~vL~~l~----~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~ 85 (150)
T 3fm5_A 28 VNKALVPTGLRVRSYSVLVLAC----EQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVV 85 (150)
T ss_dssp HHHHHGGGTCCHHHHHHHHHHH----HSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHcCCCHHHHHHHHHHH----hCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 3445567899999998776332 234467887777788999999999999999999984
No 90
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=44.92 E-value=25 Score=28.67 Aligned_cols=51 Identities=10% Similarity=-0.025 Sum_probs=37.3
Q ss_pred CCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 454 KILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 454 rL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
+|.|.+++.++.+- +.-.. .+.-.+...-+.++...+.+|.+-|.++|||.
T Consensus 17 ~Lt~~q~~Vl~~I~--~~g~~-gi~qkeLa~~~~l~~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 17 GSDNQEKLVYQIIE--DAGNK-GIWSRDVRYKSNLPLTEINKILKNLESKKLIK 67 (91)
T ss_dssp CSCSSHHHHHHHHH--HHCTT-CEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHHH--HcCCC-CcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 55677777776544 22223 45555666678999999999999999999984
No 91
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=44.52 E-value=28 Score=29.08 Aligned_cols=56 Identities=18% Similarity=0.296 Sum_probs=45.3
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 448 RLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 448 ~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
..+..++|.|..|..+..+. ..+|.++..+..+.+.++..-+.++.+-|++.|||.
T Consensus 28 ~~~~~~~l~~~~~~iL~~l~----~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~ 83 (146)
T 2fbh_A 28 RRLSHLGLSQARWLVLLHLA----RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVR 83 (146)
T ss_dssp HHTGGGCCTTTHHHHHHHHH----HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHCCCCHHHHHHHHHHH----HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCee
Confidence 34567889999987765442 256778888888888999999999999999999984
No 92
>3sub_A ADP-ribosylation factor GTPase-activating protein; protein trafficking, hydrolase AC; 2.40A {Plasmodium falciparum 3D7}
Probab=44.36 E-value=6.8 Score=35.80 Aligned_cols=25 Identities=32% Similarity=0.646 Sum_probs=19.4
Q ss_pred EeccCC-----------CCcccHHHhhcCCCCCCCC
Q 010514 5 KCAMCS-----------DFDLCVECFSVGAQIYPHE 29 (508)
Q Consensus 5 ~C~~C~-----------~~~lC~~Cfs~G~e~~~H~ 29 (508)
.|++|. ++.+|+.|-..-..++.|-
T Consensus 24 ~CaDCga~~P~WaS~nlGvflCi~CSGiHR~LG~hI 59 (163)
T 3sub_A 24 KCFDCGISNPDWVSVNHGIFLCINCSGVHRSLGVHI 59 (163)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHHTCTTT
T ss_pred ccccCCCCCCCeEEecCCeeEHHhhhHHhcCCCCCC
Confidence 599995 4679999998777777663
No 93
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=43.37 E-value=30 Score=29.51 Aligned_cols=55 Identities=16% Similarity=0.275 Sum_probs=45.1
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 448 RLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 448 ~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
..+..++|.|..|..+.-+ ..+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 32 ~~~~~~~lt~~q~~iL~~l-----~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 86 (149)
T 4hbl_A 32 KKLKQFGITYSQYLVMLTL-----WEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVK 86 (149)
T ss_dssp HHHHHTTCCHHHHHHHHHH-----HHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCHHHHHHHHHH-----HHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 4456789999998877644 235778888888888999999999999999999984
No 94
>2iqj_A Stromal membrane-associated protein 1-like; zinc, structural genomics, structural genomics consortium, SGC, protein transport; 1.90A {Homo sapiens}
Probab=43.29 E-value=6.2 Score=34.86 Aligned_cols=25 Identities=24% Similarity=0.594 Sum_probs=19.1
Q ss_pred EeccCC-----------CCcccHHHhhcCCCCCCCC
Q 010514 5 KCAMCS-----------DFDLCVECFSVGAQIYPHE 29 (508)
Q Consensus 5 ~C~~C~-----------~~~lC~~Cfs~G~e~~~H~ 29 (508)
.|++|. ++.+|+.|-..-..+|.|-
T Consensus 29 ~CaDCg~~~P~WaS~n~GvfiC~~CsgiHR~lG~hi 64 (134)
T 2iqj_A 29 FCADCQSKGPRWASWNIGVFICIRCAGIHRNLGVHI 64 (134)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTT
T ss_pred cCCcCcCCCCCeEEecCCEEEhHhhhHHHhcCCCCC
Confidence 599995 3569999998766666664
No 95
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=43.27 E-value=25 Score=29.47 Aligned_cols=55 Identities=16% Similarity=0.243 Sum_probs=44.9
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 448 RLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 448 ~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
..+..++|.|..|..+..+ ..+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 20 ~~~~~~~lt~~~~~iL~~l-----~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~ 74 (144)
T 1lj9_A 20 IEFKELSLTRGQYLYLVRV-----CENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIY 74 (144)
T ss_dssp HHTGGGTCTTTHHHHHHHH-----HHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCHHHHHHHHHH-----HHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 4556788999998776543 345678888888889999999999999999999984
No 96
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=43.03 E-value=29 Score=28.83 Aligned_cols=55 Identities=11% Similarity=0.050 Sum_probs=44.3
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 448 RLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 448 ~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
+.+..++|.|..|..+..+. .+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 27 ~~~~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~ 81 (142)
T 2fbi_A 27 PSLNQHGLTEQQWRVIRILR-----QQGEMESYQLANQACILRPSMTGVLARLERDGIVR 81 (142)
T ss_dssp HHHHHHTCCHHHHHHHHHHH-----HHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEE
Confidence 34557899999888775442 34568888888888999999999999999999984
No 97
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=41.93 E-value=25 Score=29.56 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=42.4
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 450 CGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 450 Cs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
+..++|.|..|..+..+. ..|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 30 ~~~~~lt~~~~~iL~~l~-----~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~ 82 (143)
T 3oop_A 30 IASYDVTPEQWSVLEGIE-----ANEPISQKEIALWTKKDTPTVNRIVDVLLRKELIV 82 (143)
T ss_dssp TTTSSSCHHHHHHHHHHH-----HHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hhhCCCCHHHHHHHHHHH-----HcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCee
Confidence 346788898887775442 23778888877788999999999999999999984
No 98
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=41.33 E-value=42 Score=26.35 Aligned_cols=55 Identities=9% Similarity=0.162 Sum_probs=43.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 448 RLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 448 ~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
..+..++|.|..+..+.-+ ..+|.++..+....+.++...+.++.+-|++.|||.
T Consensus 11 ~~l~~~~l~~~~~~il~~l-----~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~ 65 (109)
T 1sfx_A 11 KALEKLSFKPSDVRIYSLL-----LERGGMRVSEIARELDLSARFVRDRLKVLLKRGFVR 65 (109)
T ss_dssp HHHHHTCCCHHHHHHHHHH-----HHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCHHHHHHHHHH-----HHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 4566889988877665433 234668888888888999999999999999999984
No 99
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=40.96 E-value=31 Score=28.89 Aligned_cols=58 Identities=16% Similarity=0.095 Sum_probs=46.3
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 447 KRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 447 k~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
......++|.|..|..+.-+. + ...+.++..+....+.++..-+.++.+-|++.|||.
T Consensus 27 ~~~~~~~~lt~~q~~vL~~l~--~-~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 84 (127)
T 2frh_A 27 SLIKKEFSISFEEFAVLTYIS--E-NKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFD 84 (127)
T ss_dssp HHHHHTTCCCHHHHHHHHHHH--H-TCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSC
T ss_pred HHHHHHcCCCHHHHHHHHHHH--h-ccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 455678899999998776543 1 112678888888888999999999999999999995
No 100
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=40.16 E-value=25 Score=26.17 Aligned_cols=27 Identities=22% Similarity=0.358 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHhCC
Q 010514 51 ADEEILLLEGIEMYGFGNWGEVSEHVGT 78 (508)
Q Consensus 51 a~Eel~LLe~i~~~G~gnW~~IA~~v~~ 78 (508)
.-|...+.++++.+| ||+..+|..+|-
T Consensus 18 ~~E~~~i~~aL~~~~-gn~~~aA~~LGi 44 (63)
T 3e7l_A 18 EFEKIFIEEKLREYD-YDLKRTAEEIGI 44 (63)
T ss_dssp HHHHHHHHHHHHHTT-TCHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhC-CCHHHHHHHHCc
Confidence 357778899999999 999999999984
No 101
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=39.57 E-value=44 Score=29.02 Aligned_cols=61 Identities=10% Similarity=0.148 Sum_probs=44.4
Q ss_pred CHHHHHHHHHhCCCchHHHHHHHHHHHHHHh-CCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 443 SETEKRLCGEIKILPAHYLKMLEILSVEIYK-GNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 443 s~~Ek~LCs~lrL~P~~YL~iK~~LirE~~k-~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
...=.+.+..++|.|..|..+.-+. .. ++.++..+....+.++..-+.++.+-|++.|||.
T Consensus 32 ~~~~~~~~~~~glt~~q~~vL~~l~----~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 93 (168)
T 3u2r_A 32 KAIEEEIFSQFELSAQQYNTLRLLR----SVHPEGMATLQIADRLISRAPDITRLIDRLDDRGLVL 93 (168)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHH----HHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHH----hcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEe
Confidence 3334455678899999998775332 22 3578888888888999999999999999999984
No 102
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=39.48 E-value=31 Score=28.62 Aligned_cols=53 Identities=11% Similarity=0.141 Sum_probs=44.2
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhh-hhccCcccHHHHHHHHHHCCCC
Q 010514 449 LCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHN-LFKVEPNKVDRVYDMLVRKGIA 506 (508)
Q Consensus 449 LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~-l~kiD~~K~~rIydfl~~~Gwi 506 (508)
=|+..+|.+.+|-.+ .-..+++..+..+... ...+|.+-+++=...|++.|||
T Consensus 8 ~~~~~~L~~~QfsiL-----~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~GlV 61 (95)
T 1bja_A 8 KASNDVLNEKTATIL-----ITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGLV 61 (95)
T ss_dssp HHTTTSSCHHHHHHH-----HHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTSE
T ss_pred hHHhcCCCHHHHHHH-----HHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCCe
Confidence 378888999888644 3446778889998888 7789999999999999999998
No 103
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=39.16 E-value=35 Score=29.33 Aligned_cols=57 Identities=12% Similarity=0.230 Sum_probs=45.7
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 446 EKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 446 Ek~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
=.+.+..++|.|..|..+..+ ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 39 ~~~~l~~~~lt~~q~~vL~~l-----~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 95 (159)
T 3s2w_A 39 IGKKIEPYGIGSGQFPFLMRL-----YREDGINQESLSDYLKIDKGTTARAIQKLVDEGYVF 95 (159)
T ss_dssp HHHHHGGGTCCTTTHHHHHHH-----HHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCHHHHHHHHHH-----HHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 344566789999999776544 235778888877788999999999999999999984
No 104
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=39.12 E-value=42 Score=28.18 Aligned_cols=54 Identities=19% Similarity=0.182 Sum_probs=40.2
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 453 IKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 453 lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
++|.+..+-.++.++ .-...++.++..+.-+.+.++..-+.++.+-|.+.|||.
T Consensus 9 ~~lt~~~~~~L~~l~-~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~ 62 (139)
T 2x4h_A 9 SNLSRREFSYLLTIK-RYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVK 62 (139)
T ss_dssp --CCHHHHHHHHHHH-HHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hhcCHHHHHHHHHHH-HHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEE
Confidence 467777777776432 222246678888888888999999999999999999984
No 105
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=39.10 E-value=42 Score=28.04 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=45.4
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 446 EKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 446 Ek~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
-...+...+|.|..|..+..+ . +|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 26 ~~~~~~~~~l~~~~~~iL~~l-----~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~ 81 (146)
T 2gxg_A 26 LNRRLGELNLSYLDFLVLRAT-----S-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVV 81 (146)
T ss_dssp HHHHHHTTTCCHHHHHHHHHH-----T-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHhcCCCHHHHHHHHHH-----h-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEE
Confidence 445667888998888776542 2 6778888888888999999999999999999984
No 106
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=38.76 E-value=45 Score=28.08 Aligned_cols=56 Identities=7% Similarity=0.060 Sum_probs=45.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 447 KRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 447 k~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
...+..++|.|..|..+..+ ..+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 30 ~~~~~~~~lt~~~~~iL~~l-----~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~ 85 (152)
T 3bj6_A 30 ERGTLREGVTVGQRAILEGL-----SLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIE 85 (152)
T ss_dssp HHHHHHTTCCHHHHHHHHHH-----HHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHH-----HhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCee
Confidence 34456789999988776543 345678888888888999999999999999999984
No 107
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=38.43 E-value=41 Score=27.78 Aligned_cols=55 Identities=20% Similarity=0.327 Sum_probs=43.9
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 448 RLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 448 ~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
..+..++|.|..|..+..+ ..+|.++..+..+.+.++..-+.++.+-|++.|||.
T Consensus 20 ~~~~~~~l~~~~~~iL~~l-----~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~ 74 (138)
T 3bpv_A 20 RELGHLNLTDAQVACLLRI-----HREPGIKQDELATFFHVDKGTIARTLRRLEESGFIE 74 (138)
T ss_dssp HHSGGGTCCHHHHHHHHHH-----HHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhcCCCHHHHHHHHHH-----HHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3445678888888766533 235778888888888999999999999999999984
No 108
>2p57_A GTPase-activating protein ZNF289; zinc finger, GAP, structural genomics, structural genomics consortium, SGC, metal binding protein; 1.80A {Homo sapiens}
Probab=37.63 E-value=14 Score=33.13 Aligned_cols=25 Identities=28% Similarity=0.608 Sum_probs=18.8
Q ss_pred EeccCC-----------CCcccHHHhhcCCCCCCCC
Q 010514 5 KCAMCS-----------DFDLCVECFSVGAQIYPHE 29 (508)
Q Consensus 5 ~C~~C~-----------~~~lC~~Cfs~G~e~~~H~ 29 (508)
.|++|. ++.+|+.|-..-..++.|-
T Consensus 39 ~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hI 74 (144)
T 2p57_A 39 ACFDCGAKNPSWASITYGVFLCIDCSGVHRSLGVHL 74 (144)
T ss_dssp BCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTT
T ss_pred cCCCCcCCCCCeEEeccCEEEhhhchHHHcCCCCCC
Confidence 599995 3569999998766666663
No 109
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=37.49 E-value=32 Score=27.34 Aligned_cols=51 Identities=10% Similarity=0.187 Sum_probs=38.3
Q ss_pred HhCCCchHHHHHHHHHHHHHHhCCCCCHHHh----hhhhccCcccHHHHHHHHHHCCCCC
Q 010514 452 EIKILPAHYLKMLEILSVEIYKGNVSKKSDA----HNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 452 ~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a----~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
.++|.|..|..+..+ ...|.++..+. ...+.++..-+.++.+-|++.|||.
T Consensus 3 ~~~lt~~q~~iL~~l-----~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~ 57 (99)
T 1tbx_A 3 STPFFYPEAIVLAYL-----YDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVK 57 (99)
T ss_dssp CCSSBCHHHHHHHHH-----TTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCCCHHHHHHHHHH-----HHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEE
Confidence 356777777655432 34577777766 5667899999999999999999984
No 110
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=36.92 E-value=27 Score=29.46 Aligned_cols=55 Identities=9% Similarity=0.111 Sum_probs=44.2
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 448 RLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 448 ~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
..+..++|.|..|..+.-+ ..+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 27 ~~~~~~glt~~q~~vL~~l-----~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~ 81 (140)
T 3hsr_A 27 NYLKEYDLTYTGYIVLMAI-----ENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVV 81 (140)
T ss_dssp HHHGGGTCCHHHHHHHHHS-----CTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCHHHHHHHHHH-----HHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeE
Confidence 3456789999988766433 246778888888888999999999999999999984
No 111
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=36.85 E-value=51 Score=28.08 Aligned_cols=57 Identities=11% Similarity=0.166 Sum_probs=41.0
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhC-CCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 450 CGEIKILPAHYLKMLEILSVEIYKG-NVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 450 Cs~lrL~P~~YL~iK~~LirE~~k~-g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
+..++|.+..|+.+=-++ +-.-.+ ..++.++.-+.+.+++.-+.++.+.|+++|+|.
T Consensus 25 y~~lgLt~~e~~vll~L~-~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~ 82 (128)
T 2vn2_A 25 YKQLGLGEGELVLLLHMQ-SFFEEGVLFPTPAELAERMTVSAAECMEMVRRLLQKGMIA 82 (128)
T ss_dssp TTTTTCCHHHHHHHHHHH-HHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHHHTTSSE
T ss_pred HHHcCCCHHHHHHHHHHH-HHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 346778888887554333 222222 237887777778999999999999999999984
No 112
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=36.80 E-value=50 Score=27.92 Aligned_cols=56 Identities=11% Similarity=0.092 Sum_probs=45.0
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 447 KRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 447 k~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
...+..++|.|..|..+..+ ...|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 31 ~~~~~~~~lt~~~~~iL~~l-----~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~ 86 (154)
T 2qww_A 31 DQNAASLGLTIQQLAMINVI-----YSTPGISVADLTKRLIITGSSAAANVDGLISLGLVV 86 (154)
T ss_dssp HHHHHHHTCCHHHHHHHHHH-----HHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhcCCCHHHHHHHHHH-----HHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34566789999888776543 235678888888888999999999999999999984
No 113
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=36.24 E-value=39 Score=28.01 Aligned_cols=55 Identities=18% Similarity=0.271 Sum_probs=42.7
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 448 RLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 448 ~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
..+..++|.|..|..+..+ ..+|.++..+....+.++...+.++.+-|++.|||.
T Consensus 25 ~~~~~~~lt~~~~~iL~~l-----~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~ 79 (138)
T 1jgs_A 25 EYLSPLDITAAQFKVLCSI-----RCAACITPVELKKVLSVDLGALTRMLDRLVCKGWVE 79 (138)
T ss_dssp HHHTTTTSCHHHHHHHHHH-----HHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHhhhcCCCHHHHHHHHHH-----HhcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEE
Confidence 3455678888888766543 234567777777788999999999999999999984
No 114
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=35.86 E-value=54 Score=27.80 Aligned_cols=56 Identities=9% Similarity=0.138 Sum_probs=44.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 447 KRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 447 k~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
.+.+...+|.|..|..+.-+ ..+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 33 ~~~l~~~~lt~~~~~iL~~l-----~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~ 88 (155)
T 3cdh_A 33 HDHIRAQGLRVPEWRVLACL-----VDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVT 88 (155)
T ss_dssp HHHHHHTTCCHHHHHHHHHH-----SSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHH-----HHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 33456789999888765422 346778888888888999999999999999999984
No 115
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=35.25 E-value=51 Score=28.37 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=47.2
Q ss_pred CHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 443 SETEKRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 443 s~~Ek~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
...-...+..++|.|..|..+..+. ..|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 39 ~~~~~~~~~~~glt~~q~~vL~~l~-----~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~ 98 (161)
T 3e6m_A 39 SSELNQALASEKLPTPKLRLLSSLS-----AYGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAA 98 (161)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHH-----HHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH-----hCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3444556678999999997776543 23567888877788999999999999999999984
No 116
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=35.18 E-value=63 Score=27.15 Aligned_cols=57 Identities=18% Similarity=0.147 Sum_probs=44.4
Q ss_pred HHHHHHHhCCCchHHHHHHHHHHHHHHhCC-C-CCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 446 EKRLCGEIKILPAHYLKMLEILSVEIYKGN-V-SKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 446 Ek~LCs~lrL~P~~YL~iK~~LirE~~k~g-~-l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
|..|-..++|.|..+-.+..+ ...+ . ++..+.-..+.++...+.+..+-|++.|+|.
T Consensus 15 ~~~l~~~~gLt~~e~~il~~L-----~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~ 73 (123)
T 3r0a_A 15 EDVIKCALNLTKADLNVMKSF-----LNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEILQ 73 (123)
T ss_dssp HHHHHHHHTCCHHHHHHHHHH-----HHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHcCCCHHHHHHHHHH-----HHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 556666789998876555443 3344 4 8988888888999999999999999999983
No 117
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=35.04 E-value=31 Score=33.13 Aligned_cols=57 Identities=9% Similarity=0.117 Sum_probs=45.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHh-CCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 447 KRLCGEIKILPAHYLKMLEILSVEIYK-GNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 447 k~LCs~lrL~P~~YL~iK~~LirE~~k-~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
+.+...++|.|.+|+.+.-+- .. .+.++.++.-..+.+|...+.++.+=|.++|||.
T Consensus 24 ~~~l~~~~lt~~q~~vL~~L~----~~~~~~~~~~el~~~l~~~~~t~t~~l~rLe~~G~i~ 81 (250)
T 1p4x_A 24 KKVKPEVDMTIKEFILLTYLF----HQQENTLPFKKIVSDLCYKQSDLVQHIKVLVKHSYIS 81 (250)
T ss_dssp HHHTTTCSSCHHHHHHHHHHH----SCSCSEEEHHHHHHHSSSCGGGTHHHHHHHHHTTSCE
T ss_pred HHHhhhcCCCHHHHHHHHHHH----hcCCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEE
Confidence 445567889999998876443 23 2467888877788999999999999999999994
No 118
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=34.85 E-value=47 Score=28.42 Aligned_cols=56 Identities=13% Similarity=0.110 Sum_probs=45.1
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 447 KRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 447 k~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
.+.+...+|.|..|..+..+ ..+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 42 ~~~l~~~~lt~~~~~iL~~l-----~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~ 97 (162)
T 3cjn_A 42 RKEMTALGLSTAKMRALAIL-----SAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVR 97 (162)
T ss_dssp HTTHHHHTCCHHHHHHHHHH-----HHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHH-----HHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 33456789999888777533 236778888888889999999999999999999984
No 119
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=34.67 E-value=11 Score=31.02 Aligned_cols=18 Identities=28% Similarity=0.986 Sum_probs=15.5
Q ss_pred cEEEeccCCCCcccHHHhh
Q 010514 2 VRIKCAMCSDFDLCVECFS 20 (508)
Q Consensus 2 ~ri~C~~C~~~~lC~~Cfs 20 (508)
+++.|.+|. |-+|-.||-
T Consensus 34 ~FVAC~eC~-FPvCrpCyE 51 (93)
T 1weo_A 34 LFVACNECG-FPACRPCYE 51 (93)
T ss_dssp BCCSCSSSC-CCCCHHHHH
T ss_pred EEEeeeccC-ChhhHHHHH
Confidence 567899998 999999985
No 120
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=34.52 E-value=44 Score=27.85 Aligned_cols=54 Identities=17% Similarity=0.216 Sum_probs=43.3
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 449 LCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 449 LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
.+...+|.|..|..+.-+. .+|.++..+....+.++...+.++.+-|++.|||.
T Consensus 25 ~~~~~~l~~~~~~iL~~l~-----~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~ 78 (145)
T 2a61_A 25 VLRDFGITPAQFDILQKIY-----FEGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLT 78 (145)
T ss_dssp THHHHTCCHHHHHHHHHHH-----HHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCee
Confidence 4466789998887775432 24678888888888999999999999999999984
No 121
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=34.36 E-value=39 Score=27.44 Aligned_cols=39 Identities=5% Similarity=0.059 Sum_probs=33.9
Q ss_pred HHHH-hCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 469 VEIY-KGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 469 rE~~-k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
.+.+ ..|.++.++.-..|.+...-+++..+.|.++|.|.
T Consensus 8 l~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~ 47 (87)
T 2k02_A 8 RDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVV 47 (87)
T ss_dssp HHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSE
T ss_pred HHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3444 58999999988899999999999999999999873
No 122
>3dwd_A ADP-ribosylation factor GTPase-activating protein; GAP, structural genomics consorti ER-golgi transport, golgi apparatus, GTPase activation; 2.40A {Homo sapiens}
Probab=34.05 E-value=9.1 Score=34.38 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=19.0
Q ss_pred EeccCC-----------CCcccHHHhhcCCCCCCCC
Q 010514 5 KCAMCS-----------DFDLCVECFSVGAQIYPHE 29 (508)
Q Consensus 5 ~C~~C~-----------~~~lC~~Cfs~G~e~~~H~ 29 (508)
.|++|. ++.+|++|-..-..++.|-
T Consensus 40 ~CaDCga~~P~WaS~nlGvfiC~~CSgiHR~LG~hI 75 (147)
T 3dwd_A 40 VCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHL 75 (147)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTT
T ss_pred ccCCCCCCCCCeEEecccEeEhHhhChHHhcCCCCC
Confidence 599995 3579999998766666664
No 123
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=34.05 E-value=55 Score=28.30 Aligned_cols=52 Identities=15% Similarity=0.300 Sum_probs=39.8
Q ss_pred HHhCCCchHHHHHHHHHHHHHHh-CCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 451 GEIKILPAHYLKMLEILSVEIYK-GNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 451 s~lrL~P~~YL~iK~~LirE~~k-~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
..++|.|.+|..+-.+ .. ++..+..+.-..+.++..-+.++.+=|++.|||.
T Consensus 25 ~~~gLt~~q~~vL~~L-----~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~ 77 (151)
T 4aik_A 25 KPLELTQTHWVTLYNI-----NRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLIT 77 (151)
T ss_dssp GGGCCCHHHHHHHHHH-----HHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHcCCCHHHHHHHHHH-----HHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeE
Confidence 4578999998765332 33 4556656666678999999999999999999984
No 124
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=33.98 E-value=55 Score=27.14 Aligned_cols=56 Identities=11% Similarity=0.045 Sum_probs=44.2
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhC-CCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 448 RLCGEIKILPAHYLKMLEILSVEIYKG-NVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 448 ~LCs~lrL~P~~YL~iK~~LirE~~k~-g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
......+|.|..|..+..+. ..+ +.++..+.-..+.++..-+.++.+=|++.|||.
T Consensus 22 ~~~~~~~lt~~~~~vL~~l~----~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~ 78 (139)
T 3eco_A 22 QKLEQFDITNEQGHTLGYLY----AHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIY 78 (139)
T ss_dssp HHHGGGTCCHHHHHHHHHHH----HSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCHHHHHHHHHHH----hcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEe
Confidence 44567889999887775443 222 478888888888999999999999999999984
No 125
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=33.86 E-value=45 Score=28.03 Aligned_cols=56 Identities=13% Similarity=0.245 Sum_probs=44.3
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 447 KRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 447 k~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
.+.+..++|.|..|..+..+. ..|.++..+..+.+.++..-+.++.+-|++.|||.
T Consensus 32 ~~~~~~~~l~~~~~~iL~~l~-----~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~ 87 (150)
T 2rdp_A 32 REILTNYPITPPQFVALQWLL-----EEGDLTVGELSNKMYLACSTTTDLVDRMERNGLVA 87 (150)
T ss_dssp HHHHTTSSSCHHHHHHHHHHH-----HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHhCCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCee
Confidence 344567789998887765432 34678888888888999999999999999999984
No 126
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=33.78 E-value=40 Score=28.55 Aligned_cols=37 Identities=19% Similarity=0.302 Sum_probs=27.6
Q ss_pred HHHHHHHHhC-------CCCHHHHHHHhCCCCHHHHHHHHHhhh
Q 010514 56 LLLEGIEMYG-------FGNWGEVSEHVGTKSKSQCIDHYNAIY 92 (508)
Q Consensus 56 ~LLe~i~~~G-------~gnW~~IA~~v~~kt~~ec~~hy~~~y 92 (508)
.|..+|...| -..|.+||..+|-......+.||.++-
T Consensus 53 ~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~Lr~~Y~k~L 96 (116)
T 2li6_A 53 YLYMLVQKFGGADQVTRTQQWSMVAQRLQISDYQQLESIYFRIL 96 (116)
T ss_dssp HHHHHHHHHTSHHHHHHTTCHHHHHHHHTSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHccccCcHHHHHHHhCCChHHHHHHHHHHHH
Confidence 4666666666 137999999999766778888888753
No 127
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=33.76 E-value=40 Score=28.63 Aligned_cols=56 Identities=14% Similarity=0.280 Sum_probs=44.4
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 447 KRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 447 k~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
.+.+..++|.|..|..+..+ ..+|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 37 ~~~~~~~~l~~~~~~iL~~l-----~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~ 92 (153)
T 2pex_A 37 RGLLKALDLTYPQYLVMLVL-----WETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVT 92 (153)
T ss_dssp HHHTTTTTCCHHHHHHHHHH-----HHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHCCCCHHHHHHHHHH-----HhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEe
Confidence 34556788999888766433 235778888877788999999999999999999984
No 128
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=33.23 E-value=43 Score=26.47 Aligned_cols=37 Identities=8% Similarity=0.128 Sum_probs=33.1
Q ss_pred HHH-hCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCC
Q 010514 470 EIY-KGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIA 506 (508)
Q Consensus 470 E~~-k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi 506 (508)
+.+ .+|.++.++.-..|.+...-+++..+.|.++|.|
T Consensus 9 ~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l 46 (78)
T 1xn7_A 9 DLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKA 46 (78)
T ss_dssp HHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 444 5899999998889999999999999999999987
No 129
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=32.60 E-value=42 Score=29.37 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=44.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 447 KRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 447 k~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
...+..++|.|..|..+..+. ..++.++..+....+.++..-+.++.+-|++.|||.
T Consensus 43 ~~~l~~~glt~~q~~vL~~L~----~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~ 99 (166)
T 3deu_A 43 DHRLKPLELTQTHWVTLHNIH----QLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLIS 99 (166)
T ss_dssp HHHTTTTTCCHHHHHHHHHHH----HSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhhcCCCHHHHHHHHHHH----HcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEE
Confidence 344456789999887665432 125668888888888999999999999999999984
No 130
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=32.41 E-value=32 Score=29.58 Aligned_cols=56 Identities=21% Similarity=0.258 Sum_probs=44.1
Q ss_pred HHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 449 LCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 449 LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
....++|.+.+|-.+--+. ...+|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 27 ~l~~~gLt~~q~~vL~~L~---~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~ 82 (147)
T 4b8x_A 27 VVKPYGLTFARYEALVLLT---FSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVA 82 (147)
T ss_dssp HHGGGTCCHHHHHHHHHHH---TSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCHHHHHHHHHHH---HCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEE
Confidence 3467899999987764332 1245678888877888999999999999999999984
No 131
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=32.40 E-value=45 Score=28.20 Aligned_cols=56 Identities=20% Similarity=0.235 Sum_probs=44.6
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 447 KRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 447 k~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
...+...+|.|..|..+..+ ...|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 27 ~~~~~~~~l~~~~~~iL~~l-----~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~ 82 (155)
T 1s3j_A 27 LESMEKQGVTPAQLFVLASL-----KKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIA 82 (155)
T ss_dssp HHHHHHTTCCHHHHHHHHHH-----HHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhhcCCCHHHHHHHHHH-----HHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEe
Confidence 44556689999998777543 234667888888888999999999999999999984
No 132
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=31.72 E-value=61 Score=27.18 Aligned_cols=51 Identities=10% Similarity=0.105 Sum_probs=41.2
Q ss_pred HhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 452 EIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 452 ~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
.++|.|..|..+..+ ...|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 35 ~~~l~~~~~~iL~~l-----~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~ 85 (148)
T 3nrv_A 35 KFGIGMTEWRIISVL-----SSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIE 85 (148)
T ss_dssp GGTCCHHHHHHHHHH-----HHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred hcCCCHHHHHHHHHH-----HcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 467888888665433 356788888888888999999999999999999984
No 133
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=31.03 E-value=72 Score=26.42 Aligned_cols=57 Identities=12% Similarity=0.032 Sum_probs=44.9
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 447 KRLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 447 k~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
.++...++|.|..+-.+.-+. ...|.++..+.-..+.++...+.++.+-|++.|||.
T Consensus 16 ~~~~~~~gl~~~~~~il~~L~----~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~ 72 (152)
T 1ku9_A 16 SELAKIHGLNKSVGAVYAILY----LSDKPLTISDIMEELKISKGNVSMSLKKLEELGFVR 72 (152)
T ss_dssp HHHHHHTTCCHHHHHHHHHHH----HCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCChhHHHHHHHHH----HcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 456677899998876655432 234678888888888999999999999999999984
No 134
>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A
Probab=30.48 E-value=84 Score=30.81 Aligned_cols=46 Identities=17% Similarity=0.163 Sum_probs=36.2
Q ss_pred CCCCCHHHHHHHHHHHHHhC--CCCHHHHHHH--hCCCCHHHHHHHHHhh
Q 010514 46 CPDWNADEEILLLEGIEMYG--FGNWGEVSEH--VGTKSKSQCIDHYNAI 91 (508)
Q Consensus 46 ~~~Wta~Eel~LLe~i~~~G--~gnW~~IA~~--v~~kt~~ec~~hy~~~ 91 (508)
...||..|-..|+.++..|| .+.|++|+.- +..|+.+..+.-|..+
T Consensus 3 ~~~ltekEiR~l~Ra~~kfG~~~~R~e~I~~dA~L~~ks~~~i~~~~~~l 52 (270)
T 2xb0_X 3 LGSIGESEVRALYKAILKFGNLKEILDELIADGTLPVKSFEKYGETYDEM 52 (270)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCTTCHHHHHHTTSSCCCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence 35799999999999999999 4689999875 3358887766555443
No 135
>2k6x_A Sigma-A, RNA polymerase sigma factor RPOD; DNA-binding, transcription, transcription regulation; NMR {Thermotoga maritima}
Probab=29.60 E-value=73 Score=24.50 Aligned_cols=42 Identities=21% Similarity=0.275 Sum_probs=32.6
Q ss_pred HHHHHHHHHhCCCCCHHHhhhhhc-----cCcccHHHHHHHHHHCCC
Q 010514 464 LEILSVEIYKGNVSKKSDAHNLFK-----VEPNKVDRVYDMLVRKGI 505 (508)
Q Consensus 464 K~~LirE~~k~g~l~~~~a~~l~k-----iD~~K~~rIydfl~~~Gw 505 (508)
...||....+.|.++-.+....++ +++..+..||++|.+.|.
T Consensus 11 ~k~Li~~gK~~G~lTy~EI~d~l~~~~~~ld~e~id~i~~~L~~~gI 57 (72)
T 2k6x_A 11 IKKLISLGKKKGYITYEDIDKAFPPDFEGFDTNLIERIHEELEKHGI 57 (72)
T ss_dssp HHHHHHHHHHHSSCBHHHHHHHCSCSCSSCCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHhHcCCccHHHHHHhCccccccCCHHHHHHHHHHHHHCCC
Confidence 334665555678899887777664 688899999999999985
No 136
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3; arfgap domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.55 E-value=15 Score=33.04 Aligned_cols=25 Identities=24% Similarity=0.533 Sum_probs=18.9
Q ss_pred EeccCC-----------CCcccHHHhhcCCCCCCCC
Q 010514 5 KCAMCS-----------DFDLCVECFSVGAQIYPHE 29 (508)
Q Consensus 5 ~C~~C~-----------~~~lC~~Cfs~G~e~~~H~ 29 (508)
.|++|. ++.+|+.|-..-..++.|.
T Consensus 31 ~CaDCga~~P~WaS~n~GvfiC~~CsgiHR~LG~hi 66 (149)
T 2crw_A 31 VCFDCGAKNPSWASITYGVFLCIDCSGSHRSLGVHL 66 (149)
T ss_dssp BCSSSCCBSCCCEETTTTEECCHHHHHHHHHHCTTT
T ss_pred cCCCCcCCCCCcEEeccCEEEchhcchhhccCCCCC
Confidence 599995 3569999998766666663
No 137
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=29.52 E-value=74 Score=26.52 Aligned_cols=53 Identities=13% Similarity=0.137 Sum_probs=42.2
Q ss_pred HHHHh-CCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 449 LCGEI-KILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 449 LCs~l-rL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
.+... +|.|..|..+..+ ..+|. +..+....+.++..-+.++.+-|++.|||.
T Consensus 28 ~l~~~~~lt~~~~~iL~~l-----~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~ 81 (144)
T 3f3x_A 28 RLGKLMNLSYLDFSILKAT-----SEEPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVR 81 (144)
T ss_dssp HHHHHHSCCHHHHHHHHHH-----HHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHhcCCCHHHHHHHHHH-----HHCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEE
Confidence 34555 9999998776544 34455 888888888999999999999999999984
No 138
>3dpt_A ROCO, RAB family protein; alpha-beta-protein, signaling protein; 2.90A {Chlorobaculum tepidum}
Probab=28.37 E-value=49 Score=33.27 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=39.2
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhc---cCc-ccHHHHHHHHHHCCCC
Q 010514 453 IKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFK---VEP-NKVDRVYDMLVRKGIA 506 (508)
Q Consensus 453 lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~k---iD~-~K~~rIydfl~~~Gwi 506 (508)
=+..|..|+.+|+.|..+......++.++...+++ +.. ..+..+..||-..|.|
T Consensus 11 g~~iP~sW~~l~~~L~~~~~~~~~is~~e~~~i~~~~gl~~~~~~~~~l~~LH~lG~i 68 (332)
T 3dpt_A 11 GTPLAPSWIKVKEKLVEATTAQRYLNRTEVEKICNDSGITDPGERKTLLGYLNNLGIV 68 (332)
T ss_dssp ------CHHHHHHHHHHHHHHSSEECHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTSS
T ss_pred CCccCHHHHHHHHHHHhhhcCCCeecHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCEE
Confidence 36789999999999998766667799988777753 554 3578999999999987
No 139
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=28.05 E-value=29 Score=27.65 Aligned_cols=56 Identities=9% Similarity=-0.063 Sum_probs=40.2
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCC
Q 010514 450 CGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIA 506 (508)
Q Consensus 450 Cs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi 506 (508)
+..+.|....|..+..++- ..-.++.++..+.-..+.++..-+.++.+-|.+.|||
T Consensus 5 ~~k~~l~~~~~~iL~~l~~-~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv 60 (95)
T 2qvo_A 5 RIKLLFKEKALEILMTIYY-ESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKMV 60 (95)
T ss_dssp CHHHHSCHHHHHHHHHHHH-HHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTSE
T ss_pred HHHcCCchhHHHHHHHHHH-ccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcCc
Confidence 4556677777766655442 1111223788887778899999999999999999998
No 140
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=27.94 E-value=17 Score=36.90 Aligned_cols=25 Identities=24% Similarity=0.691 Sum_probs=18.8
Q ss_pred EeccCC-----------CCcccHHHhhcCCCCCCCC
Q 010514 5 KCAMCS-----------DFDLCVECFSVGAQIYPHE 29 (508)
Q Consensus 5 ~C~~C~-----------~~~lC~~Cfs~G~e~~~H~ 29 (508)
.|++|. ++.+|.+|-..-..++.|-
T Consensus 47 ~c~dc~~~~p~w~s~~~g~~~c~~c~~~hr~lg~~~ 82 (368)
T 3jue_A 47 QCCDCREPAPEWASINLGVTLCIQCSGIHRSLGVHF 82 (368)
T ss_dssp BCTTTCCBSCCEEETTTTEEECHHHHHHHHHHCTTT
T ss_pred cCCCCCCCCCCeEEecCCeEEcHhHHHHHhccCCCc
Confidence 599995 3679999998766666653
No 141
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=27.83 E-value=40 Score=28.28 Aligned_cols=55 Identities=11% Similarity=0.238 Sum_probs=43.3
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 448 RLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 448 ~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
+.+..++|.|..|..+..+. ..|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 31 ~~~~~~~l~~~~~~iL~~l~-----~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~ 85 (147)
T 1z91_A 31 PLLDKLNITYPQYLALLLLW-----EHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLIT 85 (147)
T ss_dssp HHHTTTCCCHHHHHHHHHHH-----HHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCHHHHHHHHHHH-----HCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEE
Confidence 34567789888887665432 34567888877788999999999999999999984
No 142
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=27.51 E-value=18 Score=35.94 Aligned_cols=41 Identities=24% Similarity=0.425 Sum_probs=26.5
Q ss_pred EeccCC-----------CCcccHHHhhcCCCCCCCCCCCCeeccCCCCCCCCCCCCCHHHH
Q 010514 5 KCAMCS-----------DFDLCVECFSVGAQIYPHESNHPYRVMDNLSFPLICPDWNADEE 54 (508)
Q Consensus 5 ~C~~C~-----------~~~lC~~Cfs~G~e~~~H~~~H~y~vi~~~~~~~~~~~Wta~Ee 54 (508)
.|++|. ++.+|..|-..-..++.|-+ +| .. +.-..|+.++-
T Consensus 39 ~c~dc~~~~~~~~~~~~~~~~c~~c~~~hr~~~~~~s----~v-~s----~~~~~~~~~~~ 90 (329)
T 3o47_A 39 VCFECGAFNPQWVSVTYGIWICLECSGRHRGLGVHLS----FV-RS----VTMDKWKDIEL 90 (329)
T ss_dssp BCTTTCCBSCCEEEGGGTEEECHHHHHHHHHHCTTTC----CE-EE----SSSCCCCHHHH
T ss_pred cCCCCCCCCCCeEEecCCEEEChhhhhhhcccCCCcC----EE-ee----ccccCCCHHHH
Confidence 599995 45799999988776666643 11 11 12245998753
No 143
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=27.45 E-value=69 Score=30.64 Aligned_cols=57 Identities=9% Similarity=0.064 Sum_probs=46.5
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCC-CCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 447 KRLCGEIKILPAHYLKMLEILSVEIYKGN-VSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 447 k~LCs~lrL~P~~YL~iK~~LirE~~k~g-~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
..+...++|.|..|..+-.+. ..+| .++..+.-..+.++...+.++.|=|++.|||.
T Consensus 148 ~~~~~~~gLt~~q~~vL~~L~----~~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe~~GlV~ 205 (250)
T 1p4x_A 148 NIIKKHLTLSFVEFTILAIIT----SQNKNIVLLKDLIETIHHKYPQTVRALNNLKKQGYLI 205 (250)
T ss_dssp HHHHHHCSSCHHHHHHHHHHH----TTTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHHTSSE
T ss_pred HHHHhhCCCCHHHHHHHHHHH----hCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE
Confidence 457779999999998776542 2333 58888888889999999999999999999984
No 144
>3fh3_A Putative ECF-type sigma factor negative effector; putative anti-sigma W factor, MCSG, PSI, structural genomics; HET: MSE; 2.10A {Bacillus anthracis str} PDB: 3fgg_A
Probab=27.40 E-value=83 Score=28.35 Aligned_cols=42 Identities=14% Similarity=0.319 Sum_probs=32.3
Q ss_pred CcCCChHHHH----HHHhhhhhh----------ccCChHHHHHHHHHHHHHHHHHH
Q 010514 298 ERNLSPEERE----IYQQYKVFM----------RFHSKEDHEELLKSVIEEHRIVK 339 (508)
Q Consensus 298 ~k~~tkeere----l~~~l~~fa----------rf~~~~d~~~l~~~l~~e~~Lr~ 339 (508)
.-++|+++++ +...|.||. ..+|+++|+++++.|......+-
T Consensus 67 ~ErLs~~eqekl~~i~~eL~PyfDKL~~~~ssk~~lt~~e~~~y~~~l~~~~~~~~ 122 (158)
T 3fh3_A 67 YDALSSEKREEMKKVSMGLQPYFDKLNGHKSSKEVLTQEEFDRYMEALMTHEIVRV 122 (158)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHCCHHHHHHHHHHHHHhccHHHHHcCCccHhhhcCHHHHHHHHHHHHHHHHhee
Confidence 3467777664 677788886 58899999999999987766654
No 145
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=27.38 E-value=92 Score=25.60 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=41.2
Q ss_pred HHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 451 GEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 451 s~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
..++|.|..|..+..+ ..+|.++..+.-..+.++...+.++.+-|++.|||.
T Consensus 25 ~~~~l~~~~~~iL~~l-----~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~ 76 (142)
T 3bdd_A 25 KQLGISLTRYSILQTL-----LKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYII 76 (142)
T ss_dssp HHHSSCHHHHHHHHHH-----HHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHcCCCHHHHHHHHHH-----HhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3358888888766543 234668888877888999999999999999999984
No 146
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=26.85 E-value=30 Score=26.88 Aligned_cols=17 Identities=18% Similarity=0.169 Sum_probs=14.8
Q ss_pred HHHHHHHhcCcchHHHH
Q 010514 343 ELQEAQAAGCRTSSEAH 359 (508)
Q Consensus 343 ~Lq~~R~~Gi~tl~e~~ 359 (508)
-|..|++.||+|+++++
T Consensus 61 Il~~W~~~gi~T~e~a~ 77 (78)
T 2zc2_A 61 ILRNWRHEGISTLRQVE 77 (78)
T ss_dssp HHHHHHHTTCCSHHHHC
T ss_pred HHHHHHHcCCCCHHHHh
Confidence 57899999999999873
No 147
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=25.76 E-value=57 Score=27.73 Aligned_cols=53 Identities=13% Similarity=0.149 Sum_probs=42.2
Q ss_pred HHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 450 CGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 450 Cs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
+...+|.|..|..+..+. ..|.++..+..+.+.++..-+.++.+-|++.|||.
T Consensus 37 ~~~~~lt~~~~~iL~~l~-----~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~ 89 (154)
T 2eth_A 37 EEISDMKTTELYAFLYVA-----LFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVV 89 (154)
T ss_dssp HHHHHSBHHHHHHHHHHH-----HHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE
T ss_pred hhhcCCCHHHHHHHHHHH-----HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 455678888887765432 34568888888888999999999999999999984
No 148
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=24.35 E-value=66 Score=26.05 Aligned_cols=36 Identities=19% Similarity=0.101 Sum_probs=30.0
Q ss_pred HHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 471 IYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 471 ~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
.+..| .++...-..+.+....+.++.++|.++|+|.
T Consensus 16 ~i~~~-~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~ 51 (95)
T 1r7j_A 16 ACKSG-SPKTRIMYGANLSYALTGRYIKMLMDLEIIR 51 (95)
T ss_dssp HHTTC-BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHcC-CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeE
Confidence 34456 7787777778999999999999999999984
No 149
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=24.30 E-value=22 Score=27.67 Aligned_cols=21 Identities=33% Similarity=0.849 Sum_probs=17.9
Q ss_pred EEEeccCCCCcccHHHhhcCC
Q 010514 3 RIKCAMCSDFDLCVECFSVGA 23 (508)
Q Consensus 3 ri~C~~C~~~~lC~~Cfs~G~ 23 (508)
-+||..|.+-..|..||-.+-
T Consensus 19 tlrC~gCdgDLYC~rC~rE~H 39 (67)
T 2d8v_A 19 TLRCAGCDGDLYCARCFREGH 39 (67)
T ss_dssp CEEETTTTSEEECSSHHHHHT
T ss_pred eEEecCCCCceehHHHHHHHc
Confidence 479999987789999998875
No 150
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=23.97 E-value=89 Score=25.95 Aligned_cols=49 Identities=12% Similarity=0.234 Sum_probs=36.7
Q ss_pred hCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 453 IKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 453 lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
++|.|..|..+.-+ ..+| ++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 34 ~~lt~~~~~iL~~l-----~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~ 82 (146)
T 3tgn_A 34 VALTNTQEHILMLL-----SEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLE 82 (146)
T ss_dssp SCCCHHHHHHHHHH-----TTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCHHHHHHHHHH-----HhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeE
Confidence 45666666554322 3456 8888877788899999999999999999984
No 151
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=23.77 E-value=72 Score=29.21 Aligned_cols=55 Identities=7% Similarity=-0.065 Sum_probs=43.6
Q ss_pred HHHHHhCCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 448 RLCGEIKILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 448 ~LCs~lrL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
..+..++|.|..|..+.-+. ..|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 39 ~~l~~~gLt~~q~~iL~~L~-----~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~ 93 (207)
T 2fxa_A 39 QWLKPYDLNINEHHILWIAY-----QLNGASISEIAKFGVMHVSTAFNFSKKLEERGYLR 93 (207)
T ss_dssp HHTGGGTCCHHHHHHHHHHH-----HHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCHHHHHHHHHHH-----HCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 34466789999998774332 23668888877788999999999999999999984
No 152
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=23.65 E-value=86 Score=25.81 Aligned_cols=55 Identities=18% Similarity=0.089 Sum_probs=44.3
Q ss_pred hCCCchHHHHHHHHHHHHHH-hCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 453 IKILPAHYLKMLEILSVEIY-KGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 453 lrL~P~~YL~iK~~LirE~~-k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
.+|.|..|-.+..+...+.. -+|.++..+..+.+-++...+.++.+-|.+.|||.
T Consensus 12 ~gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~rLe~~GLV~ 67 (96)
T 2obp_A 12 DGIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQLQAAGLAD 67 (96)
T ss_dssp -CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHHHHHCCCEE
Confidence 67899999888776644333 34678988888889999999999999999999984
No 153
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=23.53 E-value=1.1e+02 Score=25.88 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=25.8
Q ss_pred HHHHHHHHHhCC-------CCHHHHHHHhCCCC----HHHHHHHHHhh
Q 010514 55 ILLLEGIEMYGF-------GNWGEVSEHVGTKS----KSQCIDHYNAI 91 (508)
Q Consensus 55 l~LLe~i~~~G~-------gnW~~IA~~v~~kt----~~ec~~hy~~~ 91 (508)
..|..+|...|= ..|.+||..+|-.. ....+.||.++
T Consensus 43 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~ 90 (117)
T 2jrz_A 43 YSLSKIVVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI 90 (117)
T ss_dssp HHHHHHHHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHT
T ss_pred HHHHHHHHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 456777777771 37999999998532 45667777665
No 154
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=22.76 E-value=1.2e+02 Score=24.98 Aligned_cols=37 Identities=22% Similarity=0.305 Sum_probs=25.1
Q ss_pred HHHHHHHHHhCC-------CCHHHHHHHhCCCC----HHHHHHHHHhh
Q 010514 55 ILLLEGIEMYGF-------GNWGEVSEHVGTKS----KSQCIDHYNAI 91 (508)
Q Consensus 55 l~LLe~i~~~G~-------gnW~~IA~~v~~kt----~~ec~~hy~~~ 91 (508)
..|-.+|...|= ..|.+||..+|--+ ....+.||.++
T Consensus 47 ~~Ly~~V~~~GG~~~V~~~~~W~~va~~lg~~~~~~~~~~lk~~Y~k~ 94 (107)
T 2lm1_A 47 YTLHRIVQEEGGMEQTTKDRKWAKVANRMQYPSSKSVGATLKAHYERI 94 (107)
T ss_dssp HHHHHHHHHHTCHHHHHHHTTHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 456666777661 37999999998532 35667777664
No 155
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=22.54 E-value=1.8e+02 Score=27.36 Aligned_cols=59 Identities=14% Similarity=0.195 Sum_probs=42.6
Q ss_pred HHHHHHhCCCchHHHHHHHH-----HHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCC
Q 010514 447 KRLCGEIKILPAHYLKMLEI-----LSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGI 505 (508)
Q Consensus 447 k~LCs~lrL~P~~YL~iK~~-----LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gw 505 (508)
.+++..+++.+..--.+-.+ =+.+.+..|.++...|+.+..++......+++-++..||
T Consensus 138 ~~iA~~lG~s~~~V~~~l~l~~l~~~v~~~l~~g~is~~~A~~L~~l~~~~q~~l~~~i~~~~l 201 (230)
T 1vz0_A 138 EEVARRVGKARSTVANALRLLQLPPEALEALERGEITAGHARALLMLEPEDRLWGLKEILEKGL 201 (230)
T ss_dssp HHHHHHHTCCHHHHHHHHHGGGSCHHHHHHHHTTSSCHHHHHHHHTSCGGGHHHHHHHHHHTCC
T ss_pred HHHHHHHCcCHHHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHcCCcHHHHHHHHHHHHcCC
Confidence 45677777776542222221 145667789999999999999987777779999998887
No 156
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=22.21 E-value=90 Score=23.80 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=28.0
Q ss_pred CCCCHHHhhhhh-----ccCcccHHHHHHHHHHCCCCC
Q 010514 475 NVSKKSDAHNLF-----KVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 475 g~l~~~~a~~l~-----kiD~~K~~rIydfl~~~Gwi~ 507 (508)
+.++..+....+ .+...-+.|..+.|++.|+|.
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~ 69 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVT 69 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeE
Confidence 678888877777 688888889999999999984
No 157
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=22.06 E-value=80 Score=25.50 Aligned_cols=37 Identities=24% Similarity=0.347 Sum_probs=23.9
Q ss_pred HHHHHHHHHhC-------CCCHHHHHHHhCCC---C-HHHHHHHHHhh
Q 010514 55 ILLLEGIEMYG-------FGNWGEVSEHVGTK---S-KSQCIDHYNAI 91 (508)
Q Consensus 55 l~LLe~i~~~G-------~gnW~~IA~~v~~k---t-~~ec~~hy~~~ 91 (508)
..|-.+|...| -..|.+||+.+|-. + ....+.||.++
T Consensus 39 ~~Ly~~V~~~GG~~~V~~~~~W~~v~~~lg~~~~~~~~~~Lk~~Y~k~ 86 (96)
T 2jxj_A 39 YALSKIVASKGGFEMVTKEKKWSKVGSRLGYLPGKGTGSLLKSHYERI 86 (96)
T ss_dssp HHHHHHHHHHHTTHHHHHHTTHHHHHHHHTCCSCSCHHHHHHHHHTTT
T ss_pred HHHHHHHHHcCCHHHHccCCcHHHHHHHhCCCCcCcHHHHHHHHHHHH
Confidence 34555665554 13799999999842 2 45667777654
No 158
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=21.99 E-value=85 Score=26.11 Aligned_cols=49 Identities=12% Similarity=0.151 Sum_probs=37.0
Q ss_pred CCCchHHHHHHHHHHHHHHh-CCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 454 KILPAHYLKMLEILSVEIYK-GNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 454 rL~P~~YL~iK~~LirE~~k-~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
+|.|..|..+..+ .. +|.++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 32 ~l~~~~~~iL~~l-----~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~ 81 (147)
T 2hr3_A 32 PVQFSQLVVLGAI-----DRLGGDVTPSELAAAERMRSSNLAALLRELERGGLIV 81 (147)
T ss_dssp HHHHHHHHHHHHH-----HHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHH-----HHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEe
Confidence 3455555544322 33 6778888888888999999999999999999983
No 159
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=21.81 E-value=1.2e+02 Score=26.68 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=44.8
Q ss_pred HHHHHHhCCCchHHHHHHHHHHHHHHhCC--CCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 447 KRLCGEIKILPAHYLKMLEILSVEIYKGN--VSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 447 k~LCs~lrL~P~~YL~iK~~LirE~~k~g--~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
...+..++|.|..|..+.-+. ..++ .++..+.-..+.++..-+.++.+-|++.|||.
T Consensus 59 ~~~l~~~glt~~~~~iL~~L~----~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~ 117 (181)
T 2fbk_A 59 ERTYAASGLNAAGWDLLLTLY----RSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIE 117 (181)
T ss_dssp HHHHHTTTCCHHHHHHHHHHH----HHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEE
T ss_pred HHHHHHcCCCHHHHHHHHHHH----HcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEE
Confidence 345678899999988776443 1232 38888888888999999999999999999984
No 160
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=21.64 E-value=1.2e+02 Score=25.93 Aligned_cols=37 Identities=16% Similarity=0.265 Sum_probs=25.3
Q ss_pred HHHHHHHHHhCC-------CCHHHHHHHhCCCC----HHHHHHHHHhh
Q 010514 55 ILLLEGIEMYGF-------GNWGEVSEHVGTKS----KSQCIDHYNAI 91 (508)
Q Consensus 55 l~LLe~i~~~G~-------gnW~~IA~~v~~kt----~~ec~~hy~~~ 91 (508)
..|..+|...|= ..|.+||..+|--+ ....+.||.++
T Consensus 54 ~~Ly~~V~~~GG~~~V~~~~~W~~Va~~lg~~~~~s~~~~Lk~~Y~k~ 101 (125)
T 2cxy_A 54 FRLYVCVKEIGGLAQVNKNKKWRELATNLNVGTSSSAASSLKKQYIQY 101 (125)
T ss_dssp HHHHHHHHHHTSHHHHHHHTCHHHHHHHTTSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 456667777761 37999999998543 34667777664
No 161
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=21.43 E-value=65 Score=25.07 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=37.3
Q ss_pred HHHHhC-CCchHHHHHHHHHHHHHHhCC---CCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 449 LCGEIK-ILPAHYLKMLEILSVEIYKGN---VSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 449 LCs~lr-L~P~~YL~iK~~LirE~~k~g---~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
||+.++ +...+-+ ...++.....+| .++..+.-+.+.+....+.+..+=|.+.|+|.
T Consensus 2 ~~~~~~~~~~~~~~--~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~ 62 (77)
T 1qgp_A 2 LSSHFQELSIYQDQ--EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQ 62 (77)
T ss_dssp CHHHHTCTHHHHHH--HHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEE
T ss_pred hhHhhcccCCCHHH--HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 455555 3333333 233443333455 78877766677888888899999999999983
No 162
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=21.30 E-value=71 Score=26.25 Aligned_cols=49 Identities=12% Similarity=0.306 Sum_probs=38.7
Q ss_pred CCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 454 KILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 454 rL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
+|.|..|..+..+ ...|.++..+....+.++..-+.++.+-|++.|||.
T Consensus 35 ~l~~~~~~iL~~l-----~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~ 83 (140)
T 2nnn_A 35 GLTPTQWAALVRL-----GETGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQ 83 (140)
T ss_dssp CCCHHHHHHHHHH-----HHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEE
T ss_pred CCCHHHHHHHHHH-----HHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 6777777655433 234678888888888999999999999999999984
No 163
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=21.23 E-value=89 Score=23.83 Aligned_cols=49 Identities=18% Similarity=0.246 Sum_probs=34.1
Q ss_pred CCCchHHHHHHHHHHHHHHhCCCCCHHHhhhhhc----cCcccHHHHHHHHHHCCCCC
Q 010514 454 KILPAHYLKMLEILSVEIYKGNVSKKSDAHNLFK----VEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 454 rL~P~~YL~iK~~LirE~~k~g~l~~~~a~~l~k----iD~~K~~rIydfl~~~Gwi~ 507 (508)
+|.|..+..++-+ ..+|.++..+....+. +...-+.++.+-|+++|||.
T Consensus 6 ~lt~~e~~vL~~L-----~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~ 58 (82)
T 1p6r_A 6 QISDAELEVMKVI-----WKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALN 58 (82)
T ss_dssp CCCHHHHHHHHHH-----HTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHHH-----HcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeE
Confidence 4566666555422 2356778777666665 46778889999999999984
No 164
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=21.05 E-value=1.2e+02 Score=23.64 Aligned_cols=36 Identities=17% Similarity=0.171 Sum_probs=31.2
Q ss_pred HhCC-CCCHHHhhhhhccCccc-HHHHHHHHHHCCCCC
Q 010514 472 YKGN-VSKKSDAHNLFKVEPNK-VDRVYDMLVRKGIAQ 507 (508)
Q Consensus 472 ~k~g-~l~~~~a~~l~kiD~~K-~~rIydfl~~~Gwi~ 507 (508)
...| .++..+..+.+.++..- +.++.+-|++.|||.
T Consensus 25 ~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 25 EKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp HHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred HhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 3455 78998888889999999 999999999999983
No 165
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=20.78 E-value=83 Score=26.68 Aligned_cols=49 Identities=12% Similarity=0.146 Sum_probs=35.9
Q ss_pred CCCchHHHHHHHHHHHHHHh-CCCCCHHHhhhhhc----cCcccHHHHHHHHHHCCCCC
Q 010514 454 KILPAHYLKMLEILSVEIYK-GNVSKKSDAHNLFK----VEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 454 rL~P~~YL~iK~~LirE~~k-~g~l~~~~a~~l~k----iD~~K~~rIydfl~~~Gwi~ 507 (508)
+|.|..|..|+-+ .. +|.++..+....+. ++..-+.++.+-|+++|||.
T Consensus 6 ~lt~~e~~vL~~L-----~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~ 59 (138)
T 2g9w_A 6 RLGDLERAVMDHL-----WSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNLVL 59 (138)
T ss_dssp GCCHHHHHHHHHH-----HTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHHHH-----HhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCCEE
Confidence 5667776666532 23 46778777666665 78888999999999999984
No 166
>2i5u_A DNAD domain protein; structural genomics, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG, U function; HET: MSE; 1.50A {Enterococcus faecalis} SCOP: a.275.1.1
Probab=20.24 E-value=38 Score=26.83 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=11.3
Q ss_pred HHHHHHHHhcCcchHHHH
Q 010514 342 QELQEAQAAGCRTSSEAH 359 (508)
Q Consensus 342 ~~Lq~~R~~Gi~tl~e~~ 359 (508)
.-|..|++.||+|+++++
T Consensus 65 ~IL~~W~~~gi~T~e~v~ 82 (83)
T 2i5u_A 65 AILKDWEQRGFKSVEERE 82 (83)
T ss_dssp HHHHHHHHHTCCC-----
T ss_pred HHHHHHHHcCCCCHHHHh
Confidence 357899999999999874
No 167
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=20.17 E-value=85 Score=24.95 Aligned_cols=29 Identities=14% Similarity=-0.016 Sum_probs=24.0
Q ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHhCC
Q 010514 49 WNADEEILLLEGIEMYGFGNWGEVSEHVGT 78 (508)
Q Consensus 49 Wta~Eel~LLe~i~~~G~gnW~~IA~~v~~ 78 (508)
...-|...+.++++.+| ||....|+.+|-
T Consensus 38 l~~~Er~~I~~aL~~~~-GN~s~AA~~LGI 66 (81)
T 1umq_A 38 ADRVRWEHIQRIYEMCD-RNVSETARRLNM 66 (81)
T ss_dssp HHHHHHHHHHHHHHHTT-SCHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHhC-CCHHHHHHHhCC
Confidence 34456777889999999 999999999984
No 168
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=20.16 E-value=1.1e+02 Score=23.71 Aligned_cols=36 Identities=3% Similarity=0.075 Sum_probs=30.3
Q ss_pred HhCCCCCHHHhhhhhccCcccHHHHHHHHHHCCCCC
Q 010514 472 YKGNVSKKSDAHNLFKVEPNKVDRVYDMLVRKGIAQ 507 (508)
Q Consensus 472 ~k~g~l~~~~a~~l~kiD~~K~~rIydfl~~~Gwi~ 507 (508)
..+|.++..+..+.+.+...-+.+..+-|.+.|||.
T Consensus 34 ~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~ 69 (99)
T 3cuo_A 34 SGSPGTSAGELTRITGLSASATSQHLARMRDEGLID 69 (99)
T ss_dssp TTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 345578888888888999999999999999999983
Done!