BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010515
(508 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 106/433 (24%), Positives = 174/433 (40%), Gaps = 75/433 (17%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
+Y E + + A++ G+ G+ + NC E+ I + A +G+ P +
Sbjct: 54 SYAEYLEKSXXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ + S +I F +K + +++ T KT +KTIV + + + Y
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVI-TVQKTVTTIKTIVIL-----DSKVDYRGY---- 163
Query: 200 YSWDEFLQLGENKQFD------LPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG 253
D F++ F + V +K + IM +SG+TG PKGV +++ENIVT +
Sbjct: 164 QCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSH 223
Query: 254 VKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNG-AAIGFWRGDVKLLLEDIGE 312
+ + +++ ++ +P H F ++ G + + D + L+ + +
Sbjct: 224 ARDPI--YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQD 281
Query: 313 LKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIAD 372
K T VP +++ LN K L N Y NL +
Sbjct: 282 YKCTSVILVPT----LFAILN---------KSELLN---KYDLSNLVE------------ 313
Query: 373 KIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLP 431
I SG APL+ V E R V QGYGLTET + ++ P
Sbjct: 314 -----------------IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT-P 355
Query: 432 NEMSMIGTVGPPVPNVDVCLESVPEMEYD---ALSSTPRGEVCVKGSTVFSGYYKREDLT 488
G G VP L ++ D +L RGEVCVKG + GY + T
Sbjct: 356 EGDDKPGASGKVVP-----LFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEAT 410
Query: 489 KEVM-VDGWFHTG 500
KE++ +GW HTG
Sbjct: 411 KELIDEEGWLHTG 423
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 106/433 (24%), Positives = 174/433 (40%), Gaps = 75/433 (17%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
+Y E + + A++ G+ G+ + NC E+ I + A +G+ P +
Sbjct: 54 SYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ + S +I F +K + +++ T KT +KTIV + + + Y
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVI-TVQKTVTTIKTIVIL-----DSKVDYRGY---- 163
Query: 200 YSWDEFLQLGENKQFD------LPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG 253
D F++ F + V +K + IM +SG+TG PKGV +++ENIVT +
Sbjct: 164 QCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSH 223
Query: 254 VKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNG-AAIGFWRGDVKLLLEDIGE 312
+ + +++ ++ +P H F ++ G + + D + L+ + +
Sbjct: 224 ARDPI--YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQD 281
Query: 313 LKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIAD 372
K T VP +++ LN K L N Y NL +
Sbjct: 282 YKCTSVILVPT----LFAILN---------KSELLN---KYDLSNLVE------------ 313
Query: 373 KIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLP 431
I SG APL+ V E R V QGYGLTET + ++ P
Sbjct: 314 -----------------IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT-P 355
Query: 432 NEMSMIGTVGPPVPNVDVCLESVPEMEYD---ALSSTPRGEVCVKGSTVFSGYYKREDLT 488
G G VP L ++ D +L RGEVCVKG + GY + T
Sbjct: 356 EGDDKPGASGKVVP-----LFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEAT 410
Query: 489 KEVM-VDGWFHTG 500
KE++ +GW HTG
Sbjct: 411 KELIDEEGWLHTG 423
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 83/305 (27%), Positives = 126/305 (41%), Gaps = 60/305 (19%)
Query: 208 LGENKQFDLPVKKKN----------DICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCL 257
LG ++ D+ V+ + D ++YTSGTTG PKG ++ + T + +
Sbjct: 131 LGALERVDVDVRARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADA 190
Query: 258 LESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLLLEDIGELKPTI 317
+ T EDV V LPL H+ +G +G L P
Sbjct: 191 WQ-----WTGEDVLVQGLPLFHV-----------HGLVLGI--------------LGPLR 220
Query: 318 FCAVPRVLDRIYS-GLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVF 376
R L R + G ++++ G + LF + Y H+ E P AD
Sbjct: 221 RGGSVRHLGRFSTEGAARELNDGATM---LFGVPTMY--------HRIAETLP-ADP--- 265
Query: 377 DKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSM 436
++ ++ G RL++SG+A L H + V++ YG+TET T V E
Sbjct: 266 -ELAKALAG-ARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-PR 322
Query: 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-DG 495
GTVG P+P V++ L AL GE+ V+G +F+ Y R D T DG
Sbjct: 323 AGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDG 382
Query: 496 WFHTG 500
+F TG
Sbjct: 383 FFRTG 387
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 105/433 (24%), Positives = 174/433 (40%), Gaps = 75/433 (17%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
+Y E + + A++ G+ G+ + NC E+ I + A +G+ P +
Sbjct: 54 SYAEYLEKSCXLGKALQNYGLVVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTL 113
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ + S +I F +K + +++ T KT +KTIV + + + Y
Sbjct: 114 RELVHSLGISKPTIVFSSKKGLDKVI-TVQKTVTTIKTIVIL-----DSKVDYRGY---- 163
Query: 200 YSWDEFLQLGENKQFD------LPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG 253
D F++ + + V +K + IM +SG+TG PKGV +++ENIVT +
Sbjct: 164 QCLDTFIKRNTPPGYQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSH 223
Query: 254 VKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNG-AAIGFWRGDVKLLLEDIGE 312
+ + +++ ++ +P H F ++ G + + D + L+ + +
Sbjct: 224 ARDPI--YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLICGFRVVMLTKFDEETFLKTLQD 281
Query: 313 LKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIAD 372
K T VP +++ LN K L N Y NL +
Sbjct: 282 YKCTNVILVPT----LFAILN---------KSELLN---KYDLSNLVE------------ 313
Query: 373 KIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLP 431
I SG APL+ V E R V QGYGLTET + ++ P
Sbjct: 314 -----------------IASGGAPLSKEVGEAVARRFNLPGVRQGYGLTETTSAIIIT-P 355
Query: 432 NEMSMIGTVGPPVPNVDVCLESVPEMEYD---ALSSTPRGEVCVKGSTVFSGYYKREDLT 488
G G VP L ++ D +L RGEVCVKG + GY + T
Sbjct: 356 EGDDKPGASGKVVP-----LFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEAT 410
Query: 489 KEVM-VDGWFHTG 500
KE++ +GW HTG
Sbjct: 411 KELIDEEGWLHTG 423
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 81/292 (27%), Positives = 124/292 (42%), Gaps = 68/292 (23%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281
+D+ + Y+SGTTG PKGVM++++ +VT +A + E+ N S+DV + LP+ HI+
Sbjct: 225 DDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ-QVDGENPNLYFHSDDVILCVLPMFHIY 283
Query: 282 DRAIEEVFISN---GAAIGFW-RGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKIS 337
A+ + + GAAI + ++ LLLE I K T+ VP
Sbjct: 284 --ALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVP--------------- 326
Query: 338 SGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFG-GRVRLILSGAAP 396
PI I + + +R++ SGAAP
Sbjct: 327 -------------------------------PIVLAIAKSSETEKYDLSSIRVVKSGAAP 355
Query: 397 LTPHVETFLRV-VACAHVLQGYGLTETCAGTFVSL-------PNEMSMIGTVGPPVPNVD 448
L +E + A + QGYG+TE +SL P + GTV V N +
Sbjct: 356 LGKELEDAVNAKFPNAKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTV---VRNAE 412
Query: 449 VCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHT 499
++ V D+LS GE+C++G + GY T E + DGW HT
Sbjct: 413 --MKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHT 462
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 106/446 (23%), Positives = 177/446 (39%), Gaps = 107/446 (23%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY +V +V + + G+++ ++ + PE+++ LGA
Sbjct: 51 TYADVELTARRVASGLNKIGIQQGDVIMLFLPSSPEFVLAF----------------LGA 94
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS---FSKVKPEQREE----- 191
H G I P L K + I + KVK RE
Sbjct: 95 S-------HRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARESDVKVM 147
Query: 192 -IEKYGLAVYSWDEFLQLGENK--QFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIV 248
++ + E Q EN+ Q D+ +D+ + Y+SGTTG PKGVM++++ ++
Sbjct: 148 CVDSAPDGCLHFSELTQADENEAPQVDI---SPDDVVALPYSSGTTGLPKGVMLTHKGLI 204
Query: 249 TFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISN---GAAIGFW-RGDVK 304
T +A + ++ N SEDV + LP+ HI+ A+ + + GA I + ++
Sbjct: 205 TSVAQ-QVDGDNPNLYFHSEDVILCVLPMFHIY--ALNSIMLCGLRVGAPILIMPKFEIG 261
Query: 305 LLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKH 364
LL I + K +I VP V + +IA S KH
Sbjct: 262 SLLGLIEKYKVSIAPVVPPV---------------------MMSIAKSPDL------DKH 294
Query: 365 VEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRV-VACAHVLQGYGLTET- 422
+S +R+I SG APL +E +R A + QGYG+TE
Sbjct: 295 DLSS------------------LRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEAG 336
Query: 423 -----CAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPR---GEVCVKG 474
C F P ++ G G V N ++ + ++ + +S PR GE+C++G
Sbjct: 337 PVLAMCLA-FAKEPFDIKP-GACGTVVRNAEMKI-----VDPETGASLPRNQPGEICIRG 389
Query: 475 STVFSGYYKREDLT-KEVMVDGWFHT 499
+ GY + T + + +GW HT
Sbjct: 390 DQIMKGYLNDPEATSRTIDKEGWLHT 415
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 91/427 (21%), Positives = 167/427 (39%), Gaps = 63/427 (14%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E +++ +++ A++ G+ + + N ++ + + +G+ P D
Sbjct: 57 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVSSENSLQFFMPVLGALFIGVAVAPANDCYNE 116
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ + S ++ FV +K + ++L K K I+ SK + + ++
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQ-------SM 169
Query: 200 YSW-DEFLQLGENKQFDLPVKKKND--ICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKC 256
Y++ L G N+ +P D I IM +SG+TG PKGV + + + + +
Sbjct: 170 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRALAVRFSHARD 229
Query: 257 LLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNG-AAIGFWRGDVKLLLEDIGELKP 315
+ ++ + +S +P H F ++ +G + +R + +L L + + K
Sbjct: 230 PI--FGNQIAPDTAILSVVPFHHGFGMFTTLGYLISGFRVVLMYRFEEELFLRSLQDYKI 287
Query: 316 TIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIV 375
VP + L K TL + Y NL +
Sbjct: 288 QSALLVPTLFSF-------------LAKSTLID---KYDLSNLHE--------------- 316
Query: 376 FDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM 434
I SG APL+ V E + + QGYGLTET + ++ P
Sbjct: 317 --------------IASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT-PKGD 361
Query: 435 SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V 493
G VG VP + + + + L RGE+ V+G + SGY + T ++
Sbjct: 362 DKPGAVGKVVPFFEAKVVDLDTGK--TLGVNQRGELSVRGPMIMSGYVNNPEATNALIDK 419
Query: 494 DGWFHTG 500
DGW H+G
Sbjct: 420 DGWLHSG 426
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 98/432 (22%), Positives = 171/432 (39%), Gaps = 73/432 (16%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E +++ +++ A++ G+ + + N ++ + + +G+ P D
Sbjct: 57 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 116
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ + S ++ FV +K + ++L K K I+ SK + + ++
Sbjct: 117 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQ-------SM 169
Query: 200 YSW-DEFLQLGENKQFDLPVKKKND--ICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKC 256
Y++ L G N+ +P D I IM +SG+TG PKGV + + + +
Sbjct: 170 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARD 229
Query: 257 LLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAI-GF-----WRGDVKLLLEDI 310
+ ++ + +S +P H F +F + G I GF +R + +L L +
Sbjct: 230 PI--FGNQIIPDTAILSVVPFHHGFG-----MFTTLGYLICGFRVVLMYRFEEELFLRSL 282
Query: 311 GELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPI 370
+ K I S LL TLF+
Sbjct: 283 QDYK---------------------IQSA-LLVPTLFSF--------------------F 300
Query: 371 ADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVS 429
A + DK S + I SG APL+ V E + + QGYGLTET + ++
Sbjct: 301 AKSTLIDKYDLS---NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT 357
Query: 430 LPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTK 489
P G VG VP + + + + L RGE+CV+G + SGY + T
Sbjct: 358 -PEGDDKPGAVGKVVPFFEAKVVDLDTGK--TLGVNQRGELCVRGPMIMSGYVNNPEATN 414
Query: 490 EVM-VDGWFHTG 500
++ DGW H+G
Sbjct: 415 ALIDKDGWLHSG 426
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 98/432 (22%), Positives = 171/432 (39%), Gaps = 73/432 (16%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E +++ +++ A++ G+ + + N ++ + + +G+ P D
Sbjct: 52 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ + S ++ FV +K + ++L K K I+ SK + + ++
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQ-------SM 164
Query: 200 YSW-DEFLQLGENKQFDLPVKKKND--ICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKC 256
Y++ L G N+ +P D I IM +SG+TG PKGV + + + +
Sbjct: 165 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARD 224
Query: 257 LLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAI-GF-----WRGDVKLLLEDI 310
+ ++ + +S +P H F +F + G I GF +R + +L L +
Sbjct: 225 PI--FGNQIIPDTAILSVVPFHHGFG-----MFTTLGYLICGFRVVLMYRFEEELFLRSL 277
Query: 311 GELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPI 370
+ K I S LL TLF+
Sbjct: 278 QDYK---------------------IQSA-LLVPTLFSF--------------------F 295
Query: 371 ADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVS 429
A + DK S + I SG APL+ V E + + QGYGLTET + ++
Sbjct: 296 AKSTLIDKYDLS---NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT 352
Query: 430 LPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTK 489
P G VG VP + + + + L RGE+CV+G + SGY + T
Sbjct: 353 -PEGDDKPGAVGKVVPFFEAKVVDLDTGK--TLGVNQRGELCVRGPMIMSGYVNNPEATN 409
Query: 490 EVM-VDGWFHTG 500
++ DGW H+G
Sbjct: 410 ALIDKDGWLHSG 421
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 98/432 (22%), Positives = 171/432 (39%), Gaps = 73/432 (16%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
TY E +++ +++ A++ G+ + + N ++ + + +G+ P D
Sbjct: 52 TYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQFFMPVLGALFIGVAVAPANDIYNE 111
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+ + S ++ FV +K + ++L K K I+ SK + + ++
Sbjct: 112 RELLNSMNISQPTVVFVSKKGLQKILNVQKKLPIIQKIIIMDSKTDYQGFQ-------SM 164
Query: 200 YSW-DEFLQLGENKQFDLPVKKKND--ICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKC 256
Y++ L G N+ +P D I IM +SG+TG PKGV + + + +
Sbjct: 165 YTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARD 224
Query: 257 LLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAI-GF-----WRGDVKLLLEDI 310
+ ++ + +S +P H F +F + G I GF +R + +L L +
Sbjct: 225 PI--FGNQIIPDTAILSVVPFHHGFG-----MFTTLGYLICGFRVVLMYRFEEELFLRSL 277
Query: 311 GELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPI 370
+ K I S LL TLF+
Sbjct: 278 QDYK---------------------IQSA-LLVPTLFSF--------------------F 295
Query: 371 ADKIVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVS 429
A + DK S + I SG APL+ V E + + QGYGLTET + ++
Sbjct: 296 AKSTLIDKYDLS---NLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILIT 352
Query: 430 LPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTK 489
P G VG VP + + + + L RGE+CV+G + SGY + T
Sbjct: 353 -PEGDDKPGAVGKVVPFFEAKVVDLDTGK--TLGVNQRGELCVRGPMIMSGYVNNPEATN 409
Query: 490 EVM-VDGWFHTG 500
++ DGW H+G
Sbjct: 410 ALIDKDGWLHSG 421
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 96/429 (22%), Positives = 166/429 (38%), Gaps = 66/429 (15%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNAL--GLHCVPLYDTL 137
TY E +++ ++ ++ G+ + + N ++ M C AL G+ P D
Sbjct: 86 TYSEYFEMACRLAETMKRYGLGLQHHIAVCSENSLQFF--MPVCGALFIGVGVAPTNDIY 143
Query: 138 GAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197
+ + S +I F ++ + ++L K K ++ S+ ++
Sbjct: 144 NERELYNSLSISQPTIVFCSKRALQKILGVQKKLPIIQKIVILDSREDYMGKQ------- 196
Query: 198 AVYSWDE-FLQLGENKQFDLPVKKKNDICT--IMYTSGTTGDPKGVMVSNENIVTFIAGV 254
++YS+ E L G N+ +P + T IM +SG+TG PKGV ++++NI +
Sbjct: 197 SMYSFIESHLPAGFNEYDYIPDSFDRETATALIMNSSGSTGLPKGVELTHKNICVRFS-- 254
Query: 255 KCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGF-WRGDVKLLLEDIGEL 313
C ++ + ++ +P H F +++ G I +R + +L L + +
Sbjct: 255 HCRDPVFGNQIIPDTAILTVIPFHHGFGMFTTLGYLTCGFRIVLMYRFEEELFLRSLQDY 314
Query: 314 KPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADK 373
K I S LL TLF+ A
Sbjct: 315 K---------------------IQSA-LLVPTLFSF--------------------FAKS 332
Query: 374 IVFDKVKQSFGGRVRLILSGAAPLTPHV-ETFLRVVACAHVLQGYGLTETCAGTFVSLPN 432
+ DK S + I SG APL V E + + QGYGLTET + ++
Sbjct: 333 TLVDKYDLS---NLHEIASGGAPLAKEVGEAVAKRFKLPGIRQGYGLTETTSAIIITPRG 389
Query: 433 EMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM 492
G G VP + + + L RGE+CVKG + GY + T ++
Sbjct: 390 RDDKPGACGKVVPFFSAKIVDLDTGK--TLGVNQRGELCVKGPMIMKGYVNNPEATSALI 447
Query: 493 -VDGWFHTG 500
DGW H+G
Sbjct: 448 DKDGWLHSG 456
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 79/293 (26%), Positives = 117/293 (39%), Gaps = 74/293 (25%)
Query: 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278
+ +D+ I+YTSGTTG KG +S++N+ + L + T +DV + LP+
Sbjct: 152 RGADDLAAILYTSGTTGRSKGAXLSHDNLAS-----NSLTLVDYWRFTPDDVLIHALPIY 206
Query: 279 HIFDRAIEEVFISNGAAIGFWRGDV----KLLLEDIGEL--KPTIFCAVPRVLDRIYSGL 332
H +F+++ + F RG K + I +L + T+ VP R+
Sbjct: 207 HT-----HGLFVASNVTL-FARGSXIFLPKFDPDKILDLXARATVLXGVPTFYTRL---- 256
Query: 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
+ S L K+T G RL +S
Sbjct: 257 ---LQSPRLTKETT--------------------------------------GHXRLFIS 275
Query: 393 GAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI-GTVGPPVPNVDVCL 451
G+APL VL+ YG TET T S P + + G VGP +P V +
Sbjct: 276 GSAPLLADTHREWSAKTGHAVLERYGXTETNXNT--SNPYDGDRVPGAVGPALPGVSARV 333
Query: 452 ESVPEMEYDALSSTPRGEVC---VKGSTVFSGYYKREDLTK-EVMVDGWFHTG 500
PE PRG++ VKG VF GY++ + TK E DG+F TG
Sbjct: 334 TD-PETG----KELPRGDIGXIEVKGPNVFKGYWRXPEKTKSEFRDDGFFITG 381
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 117/293 (39%), Gaps = 74/293 (25%)
Query: 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278
+ +D+ I+YTSGTTG G M+S++N+ + L + T +DV + LP+
Sbjct: 152 RGADDLAAILYTSGTTGRSXGAMLSHDNLAS-----NSLTLVDYWRFTPDDVLIHALPIY 206
Query: 279 HIFDRAIEEVFISNGAAIGFWRGDVKLLL----EDIGEL--KPTIFCAVPRVLDRIYSGL 332
H +F+++ + F RG + L + I +L + T+ VP R+
Sbjct: 207 HT-----HGLFVASNVTL-FARGSMIFLPXFDPDXILDLMARATVLMGVPTFYTRLLQ-- 258
Query: 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
SP ++ G +RL +S
Sbjct: 259 -----------------------------------SP--------RLTXETTGHMRLFIS 275
Query: 393 GAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI-GTVGPPVPNVDVCL 451
G+APL VL+ YG+TET T S P + + G VGP +P V +
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNT--SNPYDGDRVPGAVGPALPGVSARV 333
Query: 452 ESVPEMEYDALSSTPRGEVC---VKGSTVFSGYYKREDLT-KEVMVDGWFHTG 500
PE + PRG++ V G VF GY++ + T E DG+F TG
Sbjct: 334 TD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITG 381
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 117/293 (39%), Gaps = 74/293 (25%)
Query: 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278
+ +D+ I+YTSGTTG G M+S++N+ + L + T +DV + LP+
Sbjct: 152 RGADDLAAILYTSGTTGRSXGAMLSHDNLAS-----NSLTLVDYWRFTPDDVLIHALPIY 206
Query: 279 HIFDRAIEEVFISNGAAIGFWRGDVKLLL----EDIGEL--KPTIFCAVPRVLDRIYSGL 332
H +F+++ + F RG + L + I +L + T+ VP R+
Sbjct: 207 HT-----HGLFVASNVTL-FARGSMIFLPXFDPDXILDLMARATVLMGVPTFYTRLLQ-- 258
Query: 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
SP ++ G +RL +S
Sbjct: 259 -----------------------------------SP--------RLTXETTGHMRLFIS 275
Query: 393 GAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI-GTVGPPVPNVDVCL 451
G+APL VL+ YG+TET T S P + + G VGP +P V +
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNT--SNPYDGDRVPGAVGPALPGVSARV 333
Query: 452 ESVPEMEYDALSSTPRGEVC---VKGSTVFSGYYKREDLT-KEVMVDGWFHTG 500
PE + PRG++ V G VF GY++ + T E DG+F TG
Sbjct: 334 TD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITG 381
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/293 (25%), Positives = 117/293 (39%), Gaps = 74/293 (25%)
Query: 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278
+ +D+ I+YTSGTTG G M+S++N+ + L + T +DV + LP+
Sbjct: 152 RGADDLAAILYTSGTTGRSXGAMLSHDNLAS-----NSLTLVDYWRFTPDDVLIHALPIY 206
Query: 279 HIFDRAIEEVFISNGAAIGFWRGDVKLLL----EDIGEL--KPTIFCAVPRVLDRIYSGL 332
H +F+++ + F RG + L + I +L + T+ VP R+
Sbjct: 207 HT-----HGLFVASNVTL-FARGSMIFLPXFDPDXILDLMARATVLMGVPTFYTRLLQ-- 258
Query: 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILS 392
SP ++ G +RL +S
Sbjct: 259 -----------------------------------SP--------RLTXETTGHMRLFIS 275
Query: 393 GAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI-GTVGPPVPNVDVCL 451
G+APL VL+ YG+TET T S P + + G VGP +P V +
Sbjct: 276 GSAPLLADTHREWSAXTGHAVLERYGMTETNMNT--SNPYDGDRVPGAVGPALPGVSARV 333
Query: 452 ESVPEMEYDALSSTPRGEVC---VKGSTVFSGYYKREDLT-KEVMVDGWFHTG 500
PE + PRG++ V G VF GY++ + T E DG+F TG
Sbjct: 334 TD-PETGXE----LPRGDIGMIEVXGPNVFXGYWRMPEXTXSEFRDDGFFITG 381
>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A
Nonribosomal Peptide Synthetase Termination Module
Length = 1304
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 99/459 (21%), Positives = 162/459 (35%), Gaps = 100/459 (21%)
Query: 50 FRMAVERNPNNRMLGQREIVDGKAGKYVWKT--YKEVYDLVIKVVNAIRTCGVEERGKCG 107
F+ AV NP D A Y +T Y+E+ + ++ ++ G +
Sbjct: 470 FKEAVNANP-----------DAPALTYSGQTLSYRELDEEANRIARRLQKHGAGKGSVVA 518
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKT 167
+Y E +IG+ G +P+ L + +++ S +
Sbjct: 519 LYTKRSLELVIGILGVLKAGAAYLPVDPKLPEDRISYMLADSAAACLL------------ 566
Query: 168 FPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTI 227
T + +K EQ E+ G ++ D+ + E ND I
Sbjct: 567 ---THQEMK----------EQAAELPYTGTTLF-IDDQTRFEEQASDPATAIDPNDPAYI 612
Query: 228 MYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEE 287
MYTSGTTG PKG + ++ NI + V + + +D ++S A FD +
Sbjct: 613 MYTSGTTGKPKGNITTHANIQGLVKHVDYM------AFSDQDTFLSVSNYA--FDAFTFD 664
Query: 288 VFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLF 347
+ S A D LL+ R+ D I Q+ + LF
Sbjct: 665 FYASMLNAARLIIADEHTLLD------------TERLTDLIL----QENVNVMFATTALF 708
Query: 348 NIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRV 407
N+ + D + G ++ G PHV LR+
Sbjct: 709 NL-------------------------LTDAGEDWMKGLRCILFGGERASVPHVRKALRI 743
Query: 408 VACAHVLQGYGLTE----TCAGTFVSLPNEMSMIGTVGPPVPNVDVCL--ESVPEMEYDA 461
+ ++ YG TE A LP+ +S + +G P+ N V + E + A
Sbjct: 744 MGPGKLINCYGPTEGTVFATAHVVHDLPDSISSL-PIGKPISNASVYILNEQSQLQPFGA 802
Query: 462 LSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+ GE+C+ G V GY R DLTKE ++ F G
Sbjct: 803 V-----GELCISGMGVSKGYVNRADLTKEKFIENPFKPG 836
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 59.3 bits (142), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 114/490 (23%), Positives = 181/490 (36%), Gaps = 102/490 (20%)
Query: 34 DGFPAPIPGME-SCWDVFRMAVERNPNNRMLGQREIVDG-KAGKYVWKTYKEVYDLVIKV 91
+ FP+ + E + WD A + G++E+V G+ TY EVY ++
Sbjct: 7 NAFPSTMMDEELNLWDFLERAAA------LFGRKEVVSRLHTGEVHRTTYAEVYQRARRL 60
Query: 92 VNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGV 151
+ +R GV + G N + A +G L + +I+ H+
Sbjct: 61 MGGLRALGVGVGDRVATLGFNHFRHLEAYFAVPGMGAVLHTANPRLSPKEIAYILNHAED 120
Query: 152 SIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGEN 211
+ + P +L LKT+ F + EK +++E LGE
Sbjct: 121 KVLLFD----PNLLPLVEAIRGELKTVQHFVVMD-------EKAPEGYLAYEE--ALGEE 167
Query: 212 KQFDLPVK-KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESV--NEKLTSE 268
PV+ + C + YT+GTTG PKGV+ S+ +V + L S+ L+ +
Sbjct: 168 AD---PVRVPERAACGMAYTTGTTGLPKGVVYSHRALV-----LHSLAASLVDGTALSEK 219
Query: 269 DVYVSYLPLAHIFDRAIEEVFISNGA--AIGFWRGDVKLLLEDIGELKPTIFCAVPRVLD 326
DV + +P+ H+ + GA + R D L+E T VP V
Sbjct: 220 DVVLPVVPMFHVNAWCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTV-- 277
Query: 327 RIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGR 386
+ L + S G KTL +
Sbjct: 278 --WLALADYLESTGHRLKTLRRL------------------------------------- 298
Query: 387 VRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETC---AGTFV-----SLPNE--MSM 436
++ G+A + F R+ V QGYGLTET FV SL E +++
Sbjct: 299 ---VVGGSAAPRSLIARFERM--GVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTL 353
Query: 437 IGTVGPPVPNVDVCL-----ESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEV 491
G P+P V + + VP+ GEV +KG + GYY E+ T+
Sbjct: 354 KAKTGLPIPLVRLRVADEEGRPVPK------DGKALGEVQLKGPWITGGYYGNEEATRSA 407
Query: 492 MV-DGWFHTG 500
+ DG+F TG
Sbjct: 408 LTPDGFFRTG 417
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 388 RLILSGAAPLTPHVETFLRVVACAH--VLQGYGLTETCAG-TFVSLPNEMSMIGTVGPPV 444
R ++G AP+ E +++ A + V+QGY LTE+C G T + + + G+ G
Sbjct: 287 RYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRAT 343
Query: 445 PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
DV + + + GEV +K + Y+ R + T++ +GWF TG
Sbjct: 344 MFTDVAVRG----DDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTG 395
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 73/197 (37%), Gaps = 33/197 (16%)
Query: 62 MLGQREIVDGKAGKYV------WKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE 115
ML QR V + YV TY ++ L + + + G+ + + + N E
Sbjct: 21 MLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVE 80
Query: 116 WIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHL 175
+ LG VP+ L A V FI+ SG + P
Sbjct: 81 FCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAP------------- 127
Query: 176 KTIVSFSKVKPEQREEIEKYGLAVYSW---DEFLQLGENKQFDLPVKK--KNDICTIMYT 230
V R + + G V W D + + D P + +D IMYT
Sbjct: 128 --------VIDAIRAQADPPG-TVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYT 178
Query: 231 SGTTGDPKGVMVSNENI 247
SGTTG PKGV+ ++E++
Sbjct: 179 SGTTGHPKGVVHTHESV 195
>pdb|3T5B|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis
pdb|3T5C|A Chain A, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
pdb|3T5C|B Chain B, Crystal Structure Of N-Terminal Domain Of Facl13 From
Mycobacterium Tuberculosis In Different Space Group C2
Length = 396
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 10/116 (8%)
Query: 388 RLILSGAAPLTPHVETFLRVVACAH--VLQGYGLTETCAG-TFVSLPNEMSMIGTVGPPV 444
R ++G AP+ E +++ A + V+QGY LTE+C G T + + + G+ G
Sbjct: 273 RYFITGGAPMP---EALIKIYAAKNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRAT 329
Query: 445 PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
DV + + + GEV +K + Y+ R + T++ +GWF TG
Sbjct: 330 MFTDVAVRG----DDGVIREHGEGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTG 381
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 73/197 (37%), Gaps = 33/197 (16%)
Query: 62 MLGQREIVDGKAGKYV------WKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE 115
ML QR V + YV TY ++ L + + + G+ + + + N E
Sbjct: 7 MLRQRATVSPRLQAYVEPSTDVRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVE 66
Query: 116 WIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHL 175
+ LG VP+ L A V FI+ SG + P
Sbjct: 67 FCCLFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAP------------- 113
Query: 176 KTIVSFSKVKPEQREEIEKYGLAVYSW---DEFLQLGENKQFDLPVKK--KNDICTIMYT 230
V R + + G V W D + + D P + +D IMYT
Sbjct: 114 --------VIDAIRAQADPPG-TVTDWIGADSLAERLRSAAADEPAVECGGDDNLFIMYT 164
Query: 231 SGTTGDPKGVMVSNENI 247
SGTTG PKGV+ ++E++
Sbjct: 165 SGTTGHPKGVVHTHESV 181
>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 501
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 73/292 (25%), Positives = 122/292 (41%), Gaps = 70/292 (23%)
Query: 211 NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDV 270
N F+L +DI +IM+TSGTTG K V + N G K ES+ +
Sbjct: 157 NTSFNL-----DDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCK---ESLG--FDRDTN 206
Query: 271 YVSYLPLAHIFDRAIEEVFISNGAAIGFW-RGDVKLLLEDIGELKPTIFCAVPRVLDRIY 329
++S LP+ HI ++ + G + + + + +L I + T VP+ L+
Sbjct: 207 WLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLN--- 263
Query: 330 SGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRL 389
L+++ L ++ +NL+K +
Sbjct: 264 ----------WLMQQGL------HEPYNLQK----------------------------I 279
Query: 390 ILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEM-SMIGTVGPPVPNVD 448
+L GA +ET L+ + +G+TETC+ + P + + TVG P NVD
Sbjct: 280 LLGGAKLSATMIETALQY--NLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVD 337
Query: 449 VCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
V +++ P E GE+ +KG+ V +GY DLT +G+F+TG
Sbjct: 338 VKIKN-PNKE-------GHGELMIKGANVMNGYLYPTDLTG-TFENGYFNTG 380
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 89/419 (21%), Positives = 158/419 (37%), Gaps = 74/419 (17%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGA 139
+ E+ ++ K+ + I GV + G+ N +++ + A + VP+ +
Sbjct: 54 NFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSIDYVXTIYALWRVAATPVPINPXYKS 113
Query: 140 GAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199
+E I+ S + V E+ K ++ + V E + G V
Sbjct: 114 FELEHILNDSEATTLVVHSX-----------LYENFKPVLEKTGV-----ERVFVVGGEV 157
Query: 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE 259
S E G ++ V + D+ I YT GTTG PKGV +++ N+ L
Sbjct: 158 NSLSEVXDSGSEDFENVKVNPEEDVALIPYTGGTTGXPKGVXLTHFNL-----AANALQL 212
Query: 260 SVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAA-IGFWRGDVKLLLEDIGELKPTIF 318
+V L+ D V P H + + + ++ G + + + L E+I + K T
Sbjct: 213 AVATGLSHXDTIVGCXPXFHSAEFGLVNLXVTVGNEYVVXGXFNQEXLAENIEKYKGTFS 272
Query: 319 CAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDK 378
AVP L+ + + L N Y + +
Sbjct: 273 WAVPPALNVLVNTLESS------------NKTYDWSY----------------------- 297
Query: 379 VKQSFGGRVRLILSGAAPLTPH-VETFLRVVA--CAHVL----QGYGLTETCAGTFVSLP 431
+++ +GA P+ P VE L++ A C + Q +G TE C + P
Sbjct: 298 --------LKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGXTEACPXVTTNPP 349
Query: 432 NEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKE 490
+ T G VP D+ L+ + + L GE+ ++G +F GY+KRE +E
Sbjct: 350 LRLDKSTTQG--VPXSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQE 406
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 98/235 (41%), Gaps = 37/235 (15%)
Query: 76 YVWK----TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCV 131
+VW+ TYK++ + + + I + ++R +YG PE II C G +
Sbjct: 20 FVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYI 79
Query: 132 PLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREE 191
P+ ++ A V+ I +SG + + T T+ IVS +K
Sbjct: 80 PVDLSIPADRVQRIAENSGAKLL---------LSATAVTVTDLPVRIVSEDNLK------ 124
Query: 192 IEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFI 251
D F N K ++ I+YTSG+TG+PKGV ++ +V+F
Sbjct: 125 -----------DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSF- 172
Query: 252 AGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLL 306
K +E N L + V+++ P + FD ++ +++ S W D ++
Sbjct: 173 --TKWAVEDFN--LQTGQVFLNQAPFS--FDLSVMDIYPSLVTGGTLWAIDKDMI 221
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 98/235 (41%), Gaps = 37/235 (15%)
Query: 76 YVWK----TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCV 131
+VW+ TYK++ + + + I + ++R +YG PE II C G +
Sbjct: 20 FVWRDAKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGCVKAGHAYI 79
Query: 132 PLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREE 191
P+ ++ A V+ I +SG + + T T+ IVS +K
Sbjct: 80 PVDLSIPADRVQRIAENSGAKLL---------LSATAVTVTDLPVRIVSEDNLK------ 124
Query: 192 IEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFI 251
D F N K ++ I+YTSG+TG+PKGV ++ +V+F
Sbjct: 125 -----------DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSF- 172
Query: 252 AGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWRGDVKLL 306
K +E N L + V+++ P + FD ++ +++ S W D ++
Sbjct: 173 --TKWAVEDFN--LQTGQVFLNQAPFS--FDLSVMDIYPSLVTGGTLWAIDKDMI 221
>pdb|3VNQ|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Atp From Streptomyces
pdb|3VNR|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With Aminobutyric Acid And Amp From Streptomyces
pdb|3VNS|A Chain A, Co-crystal Structure Of Nrps Adenylation Protein Cytc1
With D-valine And Amp From Streptomyces
Length = 544
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 61/120 (50%), Gaps = 19/120 (15%)
Query: 217 PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLP 276
P D+ ++YTSGTTG+PKGV V + N++ +AG + + + +D ++ +
Sbjct: 170 PGPGAEDMAYVIYTSGTTGNPKGVPVRHANVLALLAGAPSVFD-----FSGDDRWLLFHS 224
Query: 277 LAHIFDRAIEEVF--ISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQ 334
L+ FD ++ E++ S GA + ++L P + AV ++DR + +NQ
Sbjct: 225 LS--FDFSVWEIWGAFSTGAEL--------VVLPHWAARTPEQYLAV--IIDRGVTVINQ 272
>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From
Legionella Pneumophila
pdb|3LNV|A Chain A, The Crystal Structure Of Fatty Acyl-Adenylate Ligase From
L. Pneumophila In Complex With Acyl Adenylate And
Pyrophosphate
Length = 590
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 15/81 (18%)
Query: 204 EFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNE 263
E ++L + + K NDI + YTSG+T PKGV VS+ N LL+++N+
Sbjct: 149 ESIELNRSSSWQPTSIKSNDIAFLQYTSGSTXHPKGVXVSHHN----------LLDNLNK 198
Query: 264 KLTS-----EDVYVSYLPLAH 279
TS E + S+LP H
Sbjct: 199 IFTSFHXNDETIIFSWLPPHH 219
>pdb|1AMU|A Chain A, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
pdb|1AMU|B Chain B, Phenylalanine Activating Domain Of Gramicidin Synthetase 1
In A Complex With Amp And Phenylalanine
Length = 563
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 5/89 (5%)
Query: 414 LQGYGLTET--CAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVC 471
+ YG TET CA T+V+ + +G P+ N + + + S GE+C
Sbjct: 320 INAYGPTETTICATTWVATKETIGHSVPIGAPIQNTQIY---IVDENLQLKSVGEAGELC 376
Query: 472 VKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+ G + GY+KR +LT + VD F G
Sbjct: 377 IGGEGLARGYWKRPELTSQKFVDNPFVPG 405
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 56/97 (57%), Gaps = 12/97 (12%)
Query: 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE-SV 261
++ +++ E +P K D+ ++YTSGTTG+PKG M+ ++ I+ +K E S+
Sbjct: 164 EDTIKIREGTNLHVP-SKSTDLAYVIYTSGTTGNPKGTMLEHKG----ISNLKVFFENSL 218
Query: 262 NEKLTSEDVYVSYLPLAHIFDRAIEEVFIS--NGAAI 296
N +T +D + ++ FD ++ E+F++ GA++
Sbjct: 219 N--VTEKDRIGQFASIS--FDASVWEMFMALLTGASL 251
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 123/283 (43%), Gaps = 64/283 (22%)
Query: 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
K+++ I+YTSG+TG+PKGV +S N+ +F + C + ++ ++++ P +
Sbjct: 141 KEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWI-C----ADFPVSGGKIFLNQAPFS- 194
Query: 280 IFDRAIEEVF--ISNGAAIGFWRGDV----KLLLEDIGELKPTIFCAVPRVLDRIYSGLN 333
FD ++ +++ + +G + D K+L E++ + SGLN
Sbjct: 195 -FDLSVMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKK-----------------SGLN 236
Query: 334 QKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSG 393
S+ ++ L + +S P AD + F G V L +S
Sbjct: 237 VWTSTPSFVQMCLMDPGFSQDL------------LPHADTFM-------FCGEV-LPVSV 276
Query: 394 AAPLTPHVETFLRVVACAHVLQGYGLTE-TCAGTFVSLPNEM---SMIGTVGPPVPNVDV 449
A L +E F + A + YG TE T A T V + N++ S VG P++++
Sbjct: 277 AKAL---LERFPK----AKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNI 329
Query: 450 CLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM 492
+ + E L +GE+ + G +V GY +LT++
Sbjct: 330 F---IMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAF 369
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 67/292 (22%), Positives = 103/292 (35%), Gaps = 68/292 (23%)
Query: 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL--TSEDVYVSYLPL 277
K DIC + ++SGT G PK V N + I K ++ L T D
Sbjct: 223 KNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAKYWQNVEDDGLHYTVADSGWGKCVW 282
Query: 278 AHIFDRAIE--EVFISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQK 335
++ + I VF+ + + R + K +LE + T FCA P +
Sbjct: 283 GKLYGQWIAGCAVFVYD-----YDRFEAKNMLEKASKYGVTTFCAPPTIYRF-------- 329
Query: 336 ISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAA 395
L+K+ L + Y F LK +
Sbjct: 330 -----LIKEDLSH----YNFSTLKYA-----------------------------VVAGE 351
Query: 396 PLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVP 455
PL P V +++G+G TET T + P G++G P P + L
Sbjct: 352 PLNPEVFNRFLEFTGIKLMEGFGQTETVV-TIATFPWMEPKPGSIGKPTPGYKIEL---- 406
Query: 456 EMEYDA--LSSTPRGEVCV-----KGSTVFSGYYKREDLTKEVMVDGWFHTG 500
M+ D GE+ + K +F Y K + T+E DG++HTG
Sbjct: 407 -MDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTG 457
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 86/233 (36%), Gaps = 29/233 (12%)
Query: 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCG 107
DV+R P+ +VDG V T+++ ++ + + GV +
Sbjct: 10 DVYRRNAALFPDRTAF----MVDG-----VRLTHRDYLARAERLASGLLRDGVHTGDRVA 60
Query: 108 IYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKT 167
I NC E I + A +G +P+ L A + F++ S+ +
Sbjct: 61 ILSQNCSEMIELIGAVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGV 120
Query: 168 FPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTI 227
P S VK + G + F L + F P D I
Sbjct: 121 LP----------SLGGVK-----KAYAIGDGSGPFAPFKDLASDTPFSAPEFGAADGFVI 165
Query: 228 MYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280
++T+ G P+G ++S N++ L+++ +LT DV + LPL H+
Sbjct: 166 IHTAAVGGRPRGALISQGNLLI---AQSSLVDAW--RLTEADVNLGMLPLFHV 213
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 468 GEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
GE+ ++G TVF GY+ T+ +GW HTG
Sbjct: 348 GEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTG 380
>pdb|3L8C|A Chain A, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3L8C|B Chain B, Structure Of Probable D-Alanine--Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes
pdb|3LGX|A Chain A, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|B Chain B, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|C Chain C, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
pdb|3LGX|D Chain D, Structure Of Probable D-Alanine-Poly(Phosphoribitol)
Ligase Subunit-1 From Streptococcus Pyogenes With Atp
Length = 521
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 25/31 (80%)
Query: 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTF 250
K +D I++TSGTTG PKGV +S++N+++F
Sbjct: 143 KGDDNYYIIFTSGTTGQPKGVQISHDNLLSF 173
>pdb|3ITE|A Chain A, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
pdb|3ITE|B Chain B, The Third Adenylation Domain Of The Fungal Sidn Non-
Ribosomal Peptide Synthetase
Length = 562
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 51/106 (48%), Gaps = 5/106 (4%)
Query: 227 IMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA-HIFDRAI 285
++YTSG+TG PKGV VS N+ +F L+ +V K +L LA FD I
Sbjct: 180 LLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHI 239
Query: 286 EEVFISNGAAIGFWRGDVKLLLEDI----GELKPTIFCAVPRVLDR 327
E F++ + G+ L+D+ EL T VP +LD+
Sbjct: 240 GEXFLAWRFGLCAVTGERLSXLDDLPRTFRELGVTHAGIVPSLLDQ 285
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 21/186 (11%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG-LHCVPLYDTLG 138
+Y+E++ V + N + G+++ IY PE + M AC +G +H V ++
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV-IFGGFS 167
Query: 139 AGAVEFIICHSGVSIAFVEE------------KKIPEMLKTFPKTTEHLKTIVSFSKVKP 186
AV I S + + K + + LK P T IV +K
Sbjct: 168 PEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKN-PNVTSVEHVIV----LKR 222
Query: 187 EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
+ + G ++ W + ++ + + D I+YTSG+TG PKGV+ +
Sbjct: 223 TGSDIDWQEGRDLW-WRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGG 280
Query: 247 IVTFIA 252
+ + A
Sbjct: 281 YLVYAA 286
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
NDI + YTSG+T P+GV++++ + + + KL D VS+LP H
Sbjct: 175 NDIAYLQYTSGSTRFPRGVIITHREVXANLRAIS----HDGIKLRPGDRCVSWLPFYH 228
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 468 GEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
G +C+ G ++ SGY+ + E+ GW TG
Sbjct: 411 GHICISGPSLXSGYFGDQVSQDEIAATGWLDTG 443
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 21/186 (11%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG-LHCVPLYDTLG 138
+Y+E++ V + N + G+++ IY PE + M AC +G +H V ++
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV-IFGGFS 167
Query: 139 AGAVEFIICHSGVSIAFVEE------------KKIPEMLKTFPKTTEHLKTIVSFSKVKP 186
AV I S + + K + + LK P T IV +K
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKN-PNVTSVEHVIV----LKR 222
Query: 187 EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
+ + G ++ W + ++ + + D I+YTSG+TG PKGV+ +
Sbjct: 223 TGSDIDWQEGRDLW-WRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGG 280
Query: 247 IVTFIA 252
+ + A
Sbjct: 281 YLVYAA 286
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 21/186 (11%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG-LHCVPLYDTLG 138
+Y+E++ V + N + G+++ IY PE + M AC +G +H V ++
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV-IFGGFS 167
Query: 139 AGAVEFIICHSGVSIAFVEE------------KKIPEMLKTFPKTTEHLKTIVSFSKVKP 186
AV I S + + K + + LK P T IV +K
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKN-PNVTSVEHVIV----LKR 222
Query: 187 EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
+ + G ++ W + ++ + + D I+YTSG+TG PKGV+ +
Sbjct: 223 TGSDIDWQEGRDLW-WRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGG 280
Query: 247 IVTFIA 252
+ + A
Sbjct: 281 YLVYAA 286
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 21/186 (11%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG-LHCVPLYDTLG 138
+Y+E++ V + N + G+++ IY PE + M AC +G +H V ++
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV-IFGGFS 167
Query: 139 AGAVEFIICHSGVSIAFVEE------------KKIPEMLKTFPKTTEHLKTIVSFSKVKP 186
AV I S + + K + + LK P T IV +K
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKN-PNVTSVEHVIV----LKR 222
Query: 187 EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
+ + G ++ W + ++ + + D I+YTSG+TG PKGV+ +
Sbjct: 223 TGSDIDWQEGRDLW-WRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGG 280
Query: 247 IVTFIA 252
+ + A
Sbjct: 281 YLVYAA 286
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 21/186 (11%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG-LHCVPLYDTLG 138
+Y+E++ V + N + G+++ IY PE + M AC +G +H V ++
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV-IFGGFS 167
Query: 139 AGAVEFIICHSGVSIAFVEE------------KKIPEMLKTFPKTTEHLKTIVSFSKVKP 186
AV I S + + K + + LK P T IV +K
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGASIPLKKNVDDALKN-PNVTSVEHVIV----LKR 222
Query: 187 EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
+ + G ++ W + ++ + + D I+YTSG+TG PKGV+ +
Sbjct: 223 TGSDIDWQEGRDLW-WRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGG 280
Query: 247 IVTFIA 252
+ + A
Sbjct: 281 YLVYAA 286
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 21/186 (11%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG-LHCVPLYDTLG 138
+Y+E++ V + N + G+++ IY PE + M AC +G +H V ++
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV-IFGGFS 167
Query: 139 AGAVEFIICHSGVSIAFVEE------------KKIPEMLKTFPKTTEHLKTIVSFSKVKP 186
AV I S + + K + + LK P T IV +K
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKN-PNVTSVEHVIV----LKR 222
Query: 187 EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
+ + G ++ W + ++ + + D I+YTSG+TG PKGV+ +
Sbjct: 223 TGSDIDWQEGRDLW-WRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGG 280
Query: 247 IVTFIA 252
+ + A
Sbjct: 281 YLVYAA 286
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 21/186 (11%)
Query: 80 TYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG-LHCVPLYDTLG 138
+Y+E++ V + N + G+++ IY PE + M AC +G +H V ++
Sbjct: 109 SYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLACARIGAVHSV-IFGGFS 167
Query: 139 AGAVEFIICHSGVSIAFVEE------------KKIPEMLKTFPKTTEHLKTIVSFSKVKP 186
AV I S + + K + + LK P T IV +K
Sbjct: 168 PEAVAGRIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKN-PNVTSVEHVIV----LKR 222
Query: 187 EQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNEN 246
+ + G ++ W + ++ + + D I+YTSG+TG PKGV+ +
Sbjct: 223 TGSDIDWQEGRDLW-WRDLIEKA-SPEHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGG 280
Query: 247 IVTFIA 252
+ + A
Sbjct: 281 YLVYAA 286
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIV 248
D+ +M+TSG+TG PKGVM + +
Sbjct: 215 DVACVMFTSGSTGRPKGVMSPHRALT 240
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 53/130 (40%), Gaps = 10/130 (7%)
Query: 373 KIVFDKVKQSFGGRVRLILSGAAPLT-PHVETFLRVVACAHVLQGYGLTETCAGTFVSLP 431
+ D+V ++F G VR ++G P + PHV R + GYG E+ T
Sbjct: 315 NFLVDEVPEAFEG-VRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAV 373
Query: 432 NEMSMIGTVGPPVPNVDVCLES----VPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDL 487
+ GT P + V L V + + ++ GE+ V G+ + GY R L
Sbjct: 374 VAGDLSGTALP----IGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPAL 429
Query: 488 TKEVMVDGWF 497
T E V F
Sbjct: 430 TAERFVADPF 439
>pdb|4GR4|A Chain A, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|B Chain B, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|C Chain C, Crystal Structure Of Slgn1deltaasub
pdb|4GR4|D Chain D, Crystal Structure Of Slgn1deltaasub
Length = 469
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 223 DICTIMYTSGTTGDPKGVMVSNENIV 248
D+ +M+TSG+TG PKGVM + +
Sbjct: 215 DVACVMFTSGSTGRPKGVMSPHRALT 240
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 34/126 (26%), Positives = 52/126 (41%), Gaps = 10/126 (7%)
Query: 373 KIVFDKVKQSFGGRVRLILSGAAPLT-PHVETFLRVVACAHVLQGYGLTETCAGTFVSLP 431
+ D+V ++F G VR ++G P + PHV R + GYG E+ T
Sbjct: 315 NFLVDEVPEAFEG-VRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAV 373
Query: 432 NEMSMIGTVGPPVPNVDVCLES----VPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDL 487
+ GT P + V L V + + ++ GE+ V G+ + GY R L
Sbjct: 374 VAGDLSGTALP----IGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPAL 429
Query: 488 TKEVMV 493
T E V
Sbjct: 430 TAERFV 435
>pdb|1ZRT|E Chain E, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
pdb|1ZRT|R Chain R, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
Length = 191
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICH 148
E R G N EW++ + C LG CVP+ D G F CH
Sbjct: 111 ENRTLPAFDGTNTGEWLVMLGVCTHLG--CVPMGDKSGDFGGWFCPCH 156
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 15/104 (14%)
Query: 402 ETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMI--GTVGPPVPNVDVCLESVPEMEY 459
E F C +L G G TE + L N + GT G PVP ++ E+
Sbjct: 318 ERFTAHFGC-EILDGIGSTEML---HIFLSNRAGAVEYGTTGRPVPGYEI------ELRD 367
Query: 460 DALSSTPRGEV---CVKGSTVFSGYYKREDLTKEVMVDGWFHTG 500
+A + P GEV +KG + Y+ + ++ + W +G
Sbjct: 368 EAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSG 411
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 222 NDICTIMYTSGTTGDPKGVMVSNENI 247
+DI +Y+SG+TG PKG + ++ N+
Sbjct: 183 DDIAFWLYSSGSTGKPKGTVHTHANL 208
>pdb|3T5A|A Chain A, Crystal Structure Of N-Terminal Domain Of Faal28 G330w
Mutant From Mycobacterium Tuberculosis
Length = 480
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 227 IMYTSGTTGDPKGVMVSNENI-VTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279
+ YTSG+T P GV++S++N+ V F + + VS+LP H
Sbjct: 188 LQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGYFADTDGIPPPNSALVSWLPFYH 241
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 468 GEVCVKGS-TVFSGYYKREDLTKEVMVDGWFHT 499
GE+ V S + F GY + + T E + DGW+ T
Sbjct: 351 GELIVAASDSAFVGYLNQPEATAEKLQDGWYRT 383
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 5/87 (5%)
Query: 414 LQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVK 473
+ GYG TE ++ P GT P +V + + + +++ GE+ V
Sbjct: 301 VNGYGTTEAMNSLYMRQPK----TGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVA 356
Query: 474 GS-TVFSGYYKREDLTKEVMVDGWFHT 499
S + F GY + T E + DGW+ T
Sbjct: 357 ASDSAFVGYLNQPQATAEKLQDGWYRT 383
>pdb|3NR8|B Chain B, Crystal Structure Of Human Ship2
pdb|3NR8|A Chain A, Crystal Structure Of Human Ship2
pdb|4A9C|A Chain A, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
pdb|4A9C|B Chain B, Crystal Structure Of Human Ship2 In Complex With Biphenyl
2,3',4,5',6-Pentakisphosphate
Length = 316
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 37/85 (43%), Gaps = 2/85 (2%)
Query: 231 SGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDV-YVSYLPLAHIFDRAIEEVF 289
+ T G+ V VS T V C L S NEK + Y+ L L + DR +
Sbjct: 119 ANTLGNKGAVGVSFMFNGTSFGFVNCHLTSGNEKTARRNQNYLDILRLLSLGDRQLNAFD 178
Query: 290 ISNGAAIGFWRGDVKLLLE-DIGEL 313
IS FW GD+ L+ DI E+
Sbjct: 179 ISLRFTHLFWFGDLNYRLDMDIQEI 203
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 468 GEVCVKGS-TVFSGYYKREDLTKEVMVDGWFHT 499
GE+ V S + F GY + T E + DGW+ T
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAEKLQDGWYRT 383
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 468 GEVCVKGS-TVFSGYYKREDLTKEVMVDGWFHT 499
GE+ V S + F GY + T E + DGW+ T
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAEKLQDGWYRT 383
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 468 GEVCVKGS-TVFSGYYKREDLTKEVMVDGWFHT 499
GE+ V S + F GY + T E + DGW+ T
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAEKLQDGWYRT 383
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 468 GEVCVKGS-TVFSGYYKREDLTKEVMVDGWFHT 499
GE+ V S + F GY + T E + DGW+ T
Sbjct: 351 GELIVAASDSAFVGYLNQPQATAEKLQDGWYRT 383
>pdb|1MKM|A Chain A, Crystal Structure Of The Thermotoga Maritima Iclr
pdb|1MKM|B Chain B, Crystal Structure Of The Thermotoga Maritima Iclr
Length = 249
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 37/77 (48%), Gaps = 9/77 (11%)
Query: 127 GLHCVPLYDTLGAGAVEFIICHSGVSI-AFVEEKKIPEMLKTF---PKTTEHLKTIVSFS 182
G +P+ LG V+ SG SI AFV EK++ E LK PKT ++
Sbjct: 117 GEQSIPMVSRLGM-KVDLYSTASGKSILAFVPEKELKEYLKIVELKPKTP----NTITNP 171
Query: 183 KVKPEQREEIEKYGLAV 199
+V + E+I K G AV
Sbjct: 172 RVLKRELEKIRKRGYAV 188
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,850,603
Number of Sequences: 62578
Number of extensions: 687374
Number of successful extensions: 1671
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1543
Number of HSP's gapped (non-prelim): 110
length of query: 508
length of database: 14,973,337
effective HSP length: 103
effective length of query: 405
effective length of database: 8,527,803
effective search space: 3453760215
effective search space used: 3453760215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)