Query 010515
Match_columns 508
No_of_seqs 167 out of 1544
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 08:27:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010515.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010515hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g7s_A Long-chain-fatty-acid-- 100.0 1.6E-59 5.4E-64 493.0 41.3 399 38-506 13-427 (549)
2 1v25_A Long-chain-fatty-acid-C 100.0 2E-59 6.7E-64 491.3 41.8 394 43-506 17-423 (541)
3 3rix_A Luciferase, luciferin 4 100.0 6.7E-60 2.3E-64 496.0 38.2 406 37-506 13-427 (550)
4 3ni2_A 4-coumarate:COA ligase; 100.0 6.9E-60 2.4E-64 494.4 35.7 411 22-506 4-422 (536)
5 3o83_A Peptide arylation enzym 100.0 4.9E-59 1.7E-63 488.6 39.1 390 43-506 29-427 (544)
6 3r44_A Fatty acyl COA syntheta 100.0 9.9E-59 3.4E-63 483.3 36.5 389 39-506 11-401 (517)
7 3etc_A AMP-binding protein; ad 100.0 2.3E-58 7.9E-63 486.2 39.4 396 41-506 53-463 (580)
8 2d1s_A Luciferase, luciferin 4 100.0 1.6E-58 5.6E-63 484.8 37.9 412 22-506 7-429 (548)
9 1mdb_A 2,3-dihydroxybenzoate-A 100.0 1.6E-58 5.4E-63 484.2 34.7 386 43-506 24-418 (539)
10 3ivr_A Putative long-chain-fat 100.0 1.3E-57 4.6E-62 474.3 38.7 381 42-506 4-386 (509)
11 1t5h_X 4-chlorobenzoyl COA lig 100.0 1.8E-57 6.3E-62 472.6 38.3 378 43-506 1-390 (504)
12 3t5a_A Long-chain-fatty-acid-- 100.0 7.6E-58 2.6E-62 473.1 34.8 391 42-506 22-471 (480)
13 3c5e_A Acyl-coenzyme A synthet 100.0 8.3E-57 2.8E-61 473.6 41.0 393 41-506 35-444 (570)
14 4gr5_A Non-ribosomal peptide s 100.0 2.5E-57 8.5E-62 478.3 35.6 373 38-506 69-457 (570)
15 4fuq_A Malonyl COA synthetase; 100.0 1.9E-57 6.5E-62 472.0 33.5 381 48-506 4-387 (503)
16 2v7b_A Benzoate-coenzyme A lig 100.0 5E-57 1.7E-61 472.3 35.9 392 41-506 21-417 (529)
17 1pg4_A Acetyl-COA synthetase; 100.0 7.5E-57 2.6E-61 481.1 36.9 405 43-506 75-505 (652)
18 1ry2_A Acetyl-coenzyme A synth 100.0 1.2E-56 4.2E-61 479.7 35.5 406 44-506 82-514 (663)
19 3tsy_A Fusion protein 4-coumar 100.0 1.4E-56 4.9E-61 500.6 36.0 423 16-506 37-469 (979)
20 3e7w_A D-alanine--poly(phospho 100.0 2.2E-56 7.7E-61 465.2 34.1 372 44-505 1-386 (511)
21 3fce_A D-alanine--poly(phospho 100.0 2.1E-56 7.3E-61 465.6 32.3 373 44-505 1-387 (512)
22 1amu_A GRSA, gramicidin synthe 100.0 5.7E-56 2E-60 466.5 35.0 371 40-506 35-418 (563)
23 3rg2_A Enterobactin synthase c 100.0 1.3E-55 4.3E-60 469.4 37.7 388 42-506 25-422 (617)
24 4dg8_A PA1221; ANL superfamily 100.0 8.3E-56 2.8E-60 469.4 35.0 369 41-506 24-407 (620)
25 3l8c_A D-alanine--poly(phospho 100.0 7.2E-56 2.5E-60 462.7 33.3 375 42-506 2-391 (521)
26 3gqw_A Fatty acid AMP ligase; 100.0 2.2E-55 7.6E-60 465.0 35.9 396 31-505 8-449 (576)
27 3kxw_A Saframycin MX1 syntheta 100.0 2.1E-55 7.3E-60 466.3 33.6 389 41-506 8-447 (590)
28 3nyq_A Malonyl-COA ligase; A/B 100.0 3.5E-55 1.2E-59 455.0 29.0 372 39-506 17-393 (505)
29 3ipl_A 2-succinylbenzoate--COA 100.0 3.2E-55 1.1E-59 455.6 28.5 383 44-506 1-386 (501)
30 3ite_A SIDN siderophore synthe 100.0 1.3E-54 4.3E-59 457.4 33.0 392 37-506 13-415 (562)
31 2vsq_A Surfactin synthetase su 100.0 5.9E-52 2E-56 474.7 38.4 372 43-506 463-849 (1304)
32 4gs5_A Acyl-COA synthetase (AM 100.0 4E-32 1.4E-36 268.7 13.9 204 221-506 36-239 (358)
33 3qov_A Phenylacetate-coenzyme 100.0 3.7E-31 1.3E-35 269.6 20.2 227 218-506 81-310 (436)
34 2y27_A Phenylacetate-coenzyme 100.0 1.6E-30 5.4E-35 265.0 23.1 242 200-506 71-315 (437)
35 2y4o_A Phenylacetate-coenzyme 100.0 2.9E-30 1E-34 263.5 22.0 243 199-506 72-317 (443)
36 3hgu_A EHPF; phenazine, antibi 100.0 5.8E-29 2E-33 247.7 18.4 228 219-502 88-351 (369)
37 4b2g_A GH3-1 auxin conjugating 97.2 0.0037 1.3E-07 64.3 13.9 53 198-250 73-128 (609)
38 4eql_A 4-substituted benzoates 97.1 0.017 5.8E-07 59.2 17.2 53 198-250 67-122 (581)
39 4epl_A Jasmonic acid-amido syn 96.9 0.0068 2.3E-07 62.0 12.1 52 198-249 72-126 (581)
40 2y4o_A Phenylacetate-coenzyme 93.3 0.7 2.4E-05 45.9 12.4 125 57-184 90-223 (443)
41 2y27_A Phenylacetate-coenzyme 92.7 0.89 3E-05 45.0 12.0 125 57-184 88-221 (437)
42 3qov_A Phenylacetate-coenzyme 92.6 1.1 3.9E-05 44.2 12.7 123 59-184 86-217 (436)
43 3ipl_A 2-succinylbenzoate--COA 90.0 4.3 0.00015 40.8 14.1 122 57-184 161-285 (501)
44 3hgu_A EHPF; phenazine, antibi 84.7 3.7 0.00013 39.4 9.4 106 57-166 89-221 (369)
45 1mdb_A 2,3-dihydroxybenzoate-A 83.7 16 0.00055 37.0 14.2 122 57-184 180-309 (539)
46 2d1s_A Luciferase, luciferin 4 83.1 7 0.00024 39.8 11.2 122 59-184 192-320 (548)
47 3o83_A Peptide arylation enzym 78.5 19 0.00063 36.5 12.5 122 57-184 189-318 (544)
48 3fce_A D-alanine--poly(phospho 78.3 15 0.0005 36.9 11.6 123 57-184 142-272 (512)
49 4dg8_A PA1221; ANL superfamily 76.9 12 0.00042 38.7 10.7 123 57-185 162-288 (620)
50 4gs5_A Acyl-COA synthetase (AM 76.9 12 0.00042 35.5 10.0 122 55-184 33-159 (358)
51 3e7w_A D-alanine--poly(phospho 76.8 24 0.00081 35.3 12.6 123 57-184 141-271 (511)
52 3r44_A Fatty acyl COA syntheta 76.6 20 0.0007 35.9 12.1 121 57-184 168-295 (517)
53 3rix_A Luciferase, luciferin 4 76.5 14 0.00047 37.6 10.8 124 58-184 189-318 (550)
54 3ivr_A Putative long-chain-fat 74.5 47 0.0016 33.1 14.1 121 57-183 158-282 (509)
55 3kxw_A Saframycin MX1 syntheta 74.3 24 0.00081 36.0 12.1 123 57-184 165-300 (590)
56 4gr5_A Non-ribosomal peptide s 73.1 11 0.00037 38.6 9.0 123 57-185 212-338 (570)
57 3rg2_A Enterobactin synthase c 72.7 55 0.0019 33.6 14.5 123 57-185 182-314 (617)
58 1t5h_X 4-chlorobenzoyl COA lig 72.7 16 0.00054 36.6 10.0 122 57-184 151-283 (504)
59 3c5e_A Acyl-coenzyme A synthet 71.5 37 0.0013 34.5 12.6 124 57-185 204-334 (570)
60 3g7s_A Long-chain-fatty-acid-- 70.7 41 0.0014 33.9 12.7 106 220-330 32-140 (549)
61 3ni2_A 4-coumarate:COA ligase; 70.0 33 0.0011 34.5 11.8 100 220-330 35-137 (536)
62 1v25_A Long-chain-fatty-acid-C 69.1 49 0.0017 33.3 12.8 101 220-329 31-134 (541)
63 3t5a_A Long-chain-fatty-acid-- 65.8 61 0.0021 31.8 12.6 106 220-330 37-148 (480)
64 1ry2_A Acetyl-coenzyme A synth 61.8 63 0.0022 33.6 12.2 99 220-324 95-196 (663)
65 1amu_A GRSA, gramicidin synthe 61.6 64 0.0022 32.7 12.0 94 220-326 52-148 (563)
66 3tbh_A O-acetyl serine sulfhyd 59.4 46 0.0016 31.2 9.7 65 95-159 62-127 (334)
67 3etc_A AMP-binding protein; ad 56.5 64 0.0022 32.8 11.0 96 220-323 69-167 (580)
68 4fuq_A Malonyl COA synthetase; 56.4 53 0.0018 32.6 10.2 84 241-328 28-114 (503)
69 3vc3_A Beta-cyanoalnine syntha 54.3 63 0.0021 30.4 9.7 71 89-159 72-142 (344)
70 3ist_A Glutamate racemase; str 53.7 43 0.0015 30.3 8.1 63 48-117 19-81 (269)
71 1pg4_A Acetyl-COA synthetase; 53.6 90 0.0031 32.3 11.7 97 220-323 89-188 (652)
72 2v7b_A Benzoate-coenzyme A lig 53.5 52 0.0018 32.9 9.6 97 220-329 36-135 (529)
73 3nyq_A Malonyl-COA ligase; A/B 51.0 97 0.0033 30.7 11.1 103 57-166 153-259 (505)
74 2vsq_A Surfactin synthetase su 50.8 31 0.0011 39.2 8.1 123 57-185 605-732 (1304)
75 3tsy_A Fusion protein 4-coumar 48.0 52 0.0018 36.1 9.2 99 220-329 74-175 (979)
76 3ite_A SIDN siderophore synthe 48.0 60 0.002 32.8 9.1 108 77-185 193-306 (562)
77 3ezx_A MMCP 1, monomethylamine 46.8 1.4E+02 0.0049 25.7 11.6 117 242-405 66-195 (215)
78 3l8c_A D-alanine--poly(phospho 46.5 1E+02 0.0035 30.6 10.5 80 240-323 28-110 (521)
79 3ju7_A Putative PLP-dependent 41.3 48 0.0017 31.5 6.8 62 93-157 68-136 (377)
80 3ijw_A Aminoglycoside N3-acety 40.2 41 0.0014 30.4 5.5 23 90-112 19-41 (268)
81 4aec_A Cysteine synthase, mito 39.6 1.4E+02 0.0048 29.1 9.7 63 96-158 166-229 (430)
82 4eez_A Alcohol dehydrogenase 1 39.5 1.2E+02 0.0042 28.1 9.3 77 78-157 136-215 (348)
83 3gqw_A Fatty acid AMP ligase; 39.1 1.6E+02 0.0056 29.4 10.8 87 239-329 47-143 (576)
84 1z7w_A Cysteine synthase; tran 38.6 1.6E+02 0.0054 27.2 9.7 64 96-159 58-122 (322)
85 2q3b_A Cysteine synthase A; py 38.1 1.7E+02 0.0058 26.8 9.9 64 95-159 58-122 (313)
86 3uhf_A Glutamate racemase; str 37.3 70 0.0024 29.0 6.7 63 48-117 38-100 (274)
87 3out_A Glutamate racemase; str 37.3 1.3E+02 0.0046 27.0 8.7 62 49-117 22-83 (268)
88 3tqh_A Quinone oxidoreductase; 36.9 1.1E+02 0.0036 28.3 8.3 76 78-158 125-204 (321)
89 2gzm_A Glutamate racemase; enz 35.8 1.3E+02 0.0045 27.0 8.4 62 48-116 17-78 (267)
90 2egu_A Cysteine synthase; O-ac 35.2 1.8E+02 0.0063 26.5 9.6 64 95-159 56-120 (308)
91 3s2e_A Zinc-containing alcohol 34.8 1.2E+02 0.0043 28.0 8.5 77 78-158 139-218 (340)
92 2nyg_A YOKD protein; PFAM02522 34.3 60 0.002 29.5 5.7 22 91-112 18-39 (273)
93 2pqm_A Cysteine synthase; OASS 33.7 1.9E+02 0.0065 27.0 9.5 62 97-159 71-133 (343)
94 2cf5_A Atccad5, CAD, cinnamyl 33.6 94 0.0032 29.2 7.4 78 78-158 152-233 (357)
95 1zuw_A Glutamate racemase 1; ( 33.6 1.5E+02 0.0051 26.7 8.4 62 48-116 17-79 (272)
96 2v03_A Cysteine synthase B; py 33.6 2.4E+02 0.0081 25.7 10.0 63 96-159 53-116 (303)
97 3two_A Mannitol dehydrogenase; 32.4 1.2E+02 0.004 28.3 7.8 74 78-155 149-225 (348)
98 1o69_A Aminotransferase; struc 31.7 1.7E+02 0.0057 27.7 9.0 61 95-158 64-130 (394)
99 1ve1_A O-acetylserine sulfhydr 31.6 2.9E+02 0.0098 25.1 10.2 63 96-159 52-117 (304)
100 2vvt_A Glutamate racemase; iso 29.5 1.9E+02 0.0064 26.3 8.4 64 47-117 37-100 (290)
101 2jfz_A Glutamate racemase; cel 29.4 68 0.0023 28.6 5.3 61 48-115 14-74 (255)
102 3dzz_A Putative pyridoxal 5'-p 29.3 1.5E+02 0.005 27.8 8.1 54 100-156 106-166 (391)
103 1zsy_A Mitochondrial 2-enoyl t 29.3 1.9E+02 0.0065 27.0 8.7 79 78-157 139-223 (357)
104 3dwg_A Cysteine synthase B; su 29.2 2.9E+02 0.0098 25.5 9.8 63 96-159 65-128 (325)
105 2jfq_A Glutamate racemase; cel 29.2 1.8E+02 0.006 26.4 8.1 62 48-116 36-97 (286)
106 4b7c_A Probable oxidoreductase 29.1 1.7E+02 0.0059 26.9 8.4 59 96-157 143-202 (336)
107 4ej6_A Putative zinc-binding d 28.8 1.4E+02 0.0049 28.1 7.8 59 94-156 174-233 (370)
108 1y80_A Predicted cobalamin bin 28.4 2E+02 0.0068 24.5 8.0 57 103-159 88-148 (210)
109 1h2b_A Alcohol dehydrogenase; 28.1 1.8E+02 0.0061 27.2 8.3 62 94-158 176-239 (359)
110 3qwb_A Probable quinone oxidor 28.0 2.9E+02 0.0099 25.3 9.7 56 98-157 144-200 (334)
111 2e7j_A SEP-tRNA:Cys-tRNA synth 27.8 2.5E+02 0.0086 25.8 9.4 56 100-158 90-155 (371)
112 1yqd_A Sinapyl alcohol dehydro 27.7 1.7E+02 0.006 27.4 8.2 62 94-158 178-240 (366)
113 3ri6_A O-acetylhomoserine sulf 27.6 1.7E+02 0.0059 28.3 8.3 62 107-168 100-164 (430)
114 2jtq_A Phage shock protein E; 27.5 1.4E+02 0.0047 20.9 5.8 46 77-129 22-67 (85)
115 1eg5_A Aminotransferase; PLP-d 27.5 1.9E+02 0.0065 26.8 8.5 7 239-245 211-217 (384)
116 1uuf_A YAHK, zinc-type alcohol 26.8 1.7E+02 0.0059 27.5 8.0 75 79-157 168-245 (369)
117 1mdo_A ARNB aminotransferase; 26.7 1.4E+02 0.0049 27.9 7.5 54 99-156 75-133 (393)
118 3jv7_A ADH-A; dehydrogenase, n 26.6 2.2E+02 0.0075 26.3 8.7 78 79-159 143-225 (345)
119 3isl_A Purine catabolism prote 26.4 2.3E+02 0.0079 26.6 9.0 58 100-158 83-144 (416)
120 3sr3_A Microcin immunity prote 26.4 1.9E+02 0.0066 27.0 8.0 61 99-159 9-88 (336)
121 2oho_A Glutamate racemase; iso 26.2 2E+02 0.0068 25.8 7.9 64 47-117 25-88 (273)
122 2ayi_A Aminopeptidase T; metal 26.1 1.5E+02 0.0051 28.6 7.3 60 84-145 4-67 (408)
123 4h1h_A LMO1638 protein; MCCF-l 26.0 1.6E+02 0.0054 27.4 7.3 61 99-159 8-87 (327)
124 1wxi_A NH(3)-dependent NAD(+) 25.8 3.4E+02 0.012 24.3 9.4 76 79-157 17-110 (275)
125 3sma_A FRBF; N-acetyl transfer 25.8 46 0.0016 30.4 3.3 29 77-112 20-48 (286)
126 1gu7_A Enoyl-[acyl-carrier-pro 25.7 1.7E+02 0.0059 27.3 7.8 79 78-157 138-223 (364)
127 3goh_A Alcohol dehydrogenase, 25.0 1.6E+02 0.0055 26.9 7.2 73 78-155 115-190 (315)
128 3a2b_A Serine palmitoyltransfe 24.7 3E+02 0.01 25.7 9.4 54 100-157 124-180 (398)
129 3oon_A Outer membrane protein 24.7 1.2E+02 0.0041 23.3 5.3 76 31-109 20-95 (123)
130 3krt_A Crotonyl COA reductase; 24.0 2.3E+02 0.0077 27.6 8.4 77 78-158 198-281 (456)
131 2hqs_H Peptidoglycan-associate 23.9 1.8E+02 0.0062 22.2 6.2 64 41-108 19-82 (118)
132 2ch1_A 3-hydroxykynurenine tra 23.8 2.8E+02 0.0096 25.8 9.0 57 100-157 90-150 (396)
133 1zjc_A Aminopeptidase AMPS; me 23.6 1.4E+02 0.0048 28.9 6.6 60 84-145 7-70 (418)
134 3fpc_A NADP-dependent alcohol 23.5 1.7E+02 0.0057 27.3 7.1 75 79-157 140-218 (352)
135 2z9v_A Aspartate aminotransfer 23.5 2.5E+02 0.0087 26.1 8.6 58 100-158 80-142 (392)
136 3uko_A Alcohol dehydrogenase c 23.4 1.8E+02 0.0063 27.4 7.5 75 79-157 166-245 (378)
137 3kki_A CAI-1 autoinducer synth 23.4 1.9E+02 0.0064 27.4 7.6 55 100-158 140-194 (409)
138 3tla_A MCCF; serine protease, 23.4 2.1E+02 0.0072 27.2 7.6 61 99-159 39-118 (371)
139 3l6b_A Serine racemase; pyrido 23.0 1.5E+02 0.0053 27.7 6.7 56 103-159 76-131 (346)
140 3pc3_A CG1753, isoform A; CBS, 22.6 4.3E+02 0.015 26.2 10.3 61 97-158 106-167 (527)
141 4e5s_A MCCFLIKE protein (BA_56 22.5 2.3E+02 0.0078 26.4 7.6 61 99-159 8-87 (331)
142 1kol_A Formaldehyde dehydrogen 22.3 2.3E+02 0.008 26.8 8.0 56 95-154 178-234 (398)
143 1y7l_A O-acetylserine sulfhydr 22.2 4.2E+02 0.014 24.1 9.6 64 95-159 53-117 (316)
144 3dpi_A NAD+ synthetase; ssgcid 21.9 4E+02 0.014 24.1 8.9 73 82-157 28-114 (285)
145 2d59_A Hypothetical protein PH 21.7 1.7E+02 0.0057 23.3 5.8 49 104-153 79-127 (144)
146 4eye_A Probable oxidoreductase 21.7 3.7E+02 0.013 24.7 9.1 77 78-158 131-212 (342)
147 3kgw_A Alanine-glyoxylate amin 21.6 2.5E+02 0.0084 26.1 8.1 58 100-158 95-156 (393)
148 3nnk_A Ureidoglycine-glyoxylat 21.3 3.3E+02 0.011 25.4 9.0 58 100-158 85-146 (411)
149 3uog_A Alcohol dehydrogenase; 21.3 2.2E+02 0.0077 26.6 7.6 75 78-156 161-239 (363)
150 3i16_A Aluminum resistance pro 21.2 1.9E+02 0.0066 27.9 7.2 59 100-158 112-184 (427)
151 4hvk_A Probable cysteine desul 21.1 1.4E+02 0.0048 27.7 6.1 13 145-157 107-119 (382)
152 2bkw_A Alanine-glyoxylate amin 21.0 3.7E+02 0.013 24.7 9.2 57 101-158 84-145 (385)
153 4eb5_A Probable cysteine desul 21.0 1.4E+02 0.0047 27.8 6.0 32 126-157 87-119 (382)
154 1y81_A Conserved hypothetical 21.0 2E+02 0.0068 22.7 6.0 57 103-162 70-126 (138)
155 3b8x_A WBDK, pyridoxamine 5-ph 20.9 2.8E+02 0.0097 25.8 8.3 55 99-157 76-135 (390)
156 3t18_A Aminotransferase class 20.7 3.3E+02 0.011 25.6 8.9 55 100-157 122-185 (413)
157 2duw_A Putative COA-binding pr 20.7 1.8E+02 0.0062 23.1 5.8 50 104-154 72-121 (145)
158 3zrp_A Serine-pyruvate aminotr 20.7 2.6E+02 0.0091 25.7 8.0 58 100-158 74-135 (384)
159 1d2f_A MALY protein; aminotran 20.7 3.1E+02 0.01 25.5 8.5 53 101-156 109-168 (390)
160 1b73_A Glutamate racemase; iso 20.6 1.3E+02 0.0044 26.7 5.3 60 49-115 15-74 (254)
161 2jfn_A Glutamate racemase; cel 20.5 3.4E+02 0.012 24.4 8.3 64 46-116 33-97 (285)
162 1ofu_X SULA, hypothetical prot 20.5 3E+02 0.01 21.2 7.4 53 92-144 47-101 (119)
163 4dup_A Quinone oxidoreductase; 20.4 3.6E+02 0.012 24.9 8.8 76 78-157 139-219 (353)
164 3a2k_A TRNA(Ile)-lysidine synt 20.3 3.8E+02 0.013 26.2 9.2 70 90-159 4-87 (464)
165 1oft_A SULA, hypothetical prot 20.3 2.9E+02 0.01 22.6 6.9 52 92-143 89-142 (161)
166 2huf_A Alanine glyoxylate amin 20.2 3.7E+02 0.013 24.9 9.0 57 100-157 91-151 (393)
No 1
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=100.00 E-value=1.6e-59 Score=493.04 Aligned_cols=399 Identities=21% Similarity=0.278 Sum_probs=333.7
Q ss_pred CCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCC--CCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchh
Q 010515 38 APIPGMESCWDVFRMAVERNPNNRMLGQREIVDGK--AGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE 115 (508)
Q Consensus 38 ~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~--~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~ 115 (508)
....+..|+.++|+++++++||++|+++. +.. .+..+++||+||.++++++|+.|++.|+++||+|+|+++|+++
T Consensus 13 ~~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~ 89 (549)
T 3g7s_A 13 SLYYPKISLADRIDAAAEKFGEKTAIISA---EPKFPSEFPESMNFLEICEVTKKLASGISRKGVRKGEHVGVCIPNSID 89 (549)
T ss_dssp CCCCCCCCTTHHHHHHHHHHTTSEEEEEE---SSCCCCSSCSEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHH
T ss_pred CCCcCCCCHHHHHHHHHHhCCCceEEEeC---CCcccccccceeeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHH
Confidence 33455689999999999999999999987 421 2334689999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhc
Q 010515 116 WIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKY 195 (508)
Q Consensus 116 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~ 195 (508)
+++++|||+++|++++|+++.++.+++.+++++++++++|++......+....... .+..++..+..
T Consensus 90 ~~~~~lA~~~~G~~~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~~~----------- 156 (549)
T 3g7s_A 90 YVMTIYALWRVAATPVPINPMYKSFELEHILNDSEATTLVVHSMLYENFKPVLEKT--GVERVFVVGGE----------- 156 (549)
T ss_dssp HHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHHHHTTS--CCCEEEEETCS-----------
T ss_pred HHHHHHHHHHhCCEEEccCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHHHHhhC--CCcEEEEeCCC-----------
Confidence 99999999999999999999999999999999999999999988777665554333 25566655432
Q ss_pred CcEEeeHHHHHHcccCCCCCCCCCC-CCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEe
Q 010515 196 GLAVYSWDEFLQLGENKQFDLPVKK-KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274 (508)
Q Consensus 196 ~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 274 (508)
..+++++........ ...... ++++++|+|||||||.||||+++|+++.+.+..+...+ ++.+.|++++.
T Consensus 157 ---~~~~~~~~~~~~~~~-~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~ 227 (549)
T 3g7s_A 157 ---VNSLSEVMDSGSEDF-ENVKVNPEEDVALIPYTGGTTGMPKGVMLTHFNLAANALQLAVAT-----GLSHMDTIVGC 227 (549)
T ss_dssp ---SSCHHHHHHHSCSCC-CCCCCCTTTSEEECCEECCCCC-CEEEEEEHHHHHHHHHHHHHHH-----CCCTTCEEECC
T ss_pred ---CcCHHHHHhcCcccc-ccccCCCCCCEEEEEECCCccCCCceEEEcHHHHHHHHHHHHHHc-----CCCCCCEEEEe
Confidence 235666665543322 222333 38999999999999999999999999999988865554 78899999999
Q ss_pred cChHHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHh
Q 010515 275 LPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSY 353 (508)
Q Consensus 275 ~p~~~~~g~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (508)
+|++|.+++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..+.+........
T Consensus 228 ~p~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--------------- 292 (549)
T 3g7s_A 228 MPMFHSAEFGLVNLMVTVGNEYVVMGMFNQEMLAENIEKYKGTFSWAVPPALNVLVNTLESSNKT--------------- 292 (549)
T ss_dssp SCTTSHHHHHHHTTHHHHCCEEEEESSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHSCCC---------------
T ss_pred CcHHHHHHHHHHHHHHhcCceEEEcCCCCHHHHHHHHHHhCCeEEEeCCHHHHHHHhhhhhhccc---------------
Confidence 999999998887788999999999876 9999999999999999999999999987754332100
Q ss_pred HHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHH----hC---CceEeccCcccCCcce
Q 010515 354 KFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVV----AC---AHVLQGYGLTETCAGT 426 (508)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~----~~---~~v~~~yG~tE~~~~~ 426 (508)
...+++|.+++||+++++++.+.+.+. ++ +.+++.||+||+++++
T Consensus 293 ----------------------------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~ 344 (549)
T 3g7s_A 293 ----------------------------YDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQIWGMTEACPMV 344 (549)
T ss_dssp ----------------------------CCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEEEECGGGSSEE
T ss_pred ----------------------------CCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccceEeccccchhh
Confidence 011479999999999999999999887 56 8999999999999888
Q ss_pred eccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc---ccC--ceecCc
Q 010515 427 FVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM---VDG--WFHTGC 501 (508)
Q Consensus 427 ~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f---~~g--w~~TGD 501 (508)
+..........+++|+|+++++++|+|.+++.+++. |+.|||+|+||+++.||||+|+.|.+.| .+| ||+|||
T Consensus 345 ~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g~~~~~TGD 422 (549)
T 3g7s_A 345 TTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGV--GESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGD 422 (549)
T ss_dssp EECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECT--TCCEEEEEESTTSCSEETTCTTGGGTSEEECTTCCEEEEEEE
T ss_pred hcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCC--CCceEEEEECcchhhhhCCChhhhhhhhhccCCCCceEccCc
Confidence 777665545568999999999999999556665554 5899999999999999999999999998 678 999999
Q ss_pred ccccc
Q 010515 502 PHLFL 506 (508)
Q Consensus 502 ~g~~~ 506 (508)
+|+++
T Consensus 423 l~~~~ 427 (549)
T 3g7s_A 423 VGFID 427 (549)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99975
No 2
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=100.00 E-value=2e-59 Score=491.26 Aligned_cols=394 Identities=21% Similarity=0.279 Sum_probs=325.2
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010515 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
..|+.++|+++++++||++|+++. +. +..+++||+||.++++++|+.|+++|+++||+|+|+++|++++++++||
T Consensus 17 ~~~l~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~~lA 91 (541)
T 1v25_A 17 ELNLWDFLERAAALFGRKEVVSRL---HT--GEVHRTTYAEVYQRARRLMGGLRALGVGVGDRVATLGFNHFRHLEAYFA 91 (541)
T ss_dssp CCCTHHHHHHHHHHSTTCEEEEEC---TT--SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEEe---cC--CCCceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 368999999999999999999864 22 1236899999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeH
Q 010515 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~ 202 (508)
|+++|++++|+++.++.+++.+++++++++++|++.+....+....... +.++.++.++.... .....+
T Consensus 92 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----------~~~~~~ 160 (541)
T 1v25_A 92 VPGMGAVLHTANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVEAIRGEL-KTVQHFVVMDEKAP----------EGYLAY 160 (541)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHGGGC-SSCCEEEESSSCCC----------TTCEEH
T ss_pred HHhcCcEEEecCcccCHHHHHHHHHhCCCcEEEEChhHHHHHHHHHhhC-CCccEEEEecCCCC----------cccccH
Confidence 9999999999999999999999999999999999988766555443322 45666766654321 013356
Q ss_pred HHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHH
Q 010515 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (508)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 282 (508)
++++..... .....++++++|+|||||||.||||+++|+++........ ......+.++|++++.+|++|.++
T Consensus 161 ~~~~~~~~~----~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~---~~~~~~~~~~d~~l~~~p~~h~~~ 233 (541)
T 1v25_A 161 EEALGEEAD----PVRVPERAACGMAYTTGTTGLPKGVVYSHRALVLHSLAAS---LVDGTALSEKDVVLPVVPMFHVNA 233 (541)
T ss_dssp HHHCCSCCC----CCCCCTTSEEEEEEECSSSSSCEEEEEEHHHHHHHHHHTT---STTTTCCCTTCEEEECSCTTSHHH
T ss_pred HHHhhccCC----cccCCCCCcEEEEECCCCCCCCcEeeeehHHHHHHHhhhh---hcccccCCCCCEEEEeccchhhhH
Confidence 555432211 1344678999999999999999999999999987665421 112236788999999999999999
Q ss_pred HHHHHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhc
Q 010515 283 RAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (508)
Q Consensus 283 ~~~~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (508)
+...+.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+.+......
T Consensus 234 ~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------------ 289 (541)
T 1v25_A 234 WCLPYAATLVGAKQVLPGPRLDPASLVELFDGEGVTFTAGVPTVWLALADYLESTG------------------------ 289 (541)
T ss_dssp HTHHHHHHHHTCEEEECTTCCSHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHHHT------------------------
T ss_pred HHHHHHHHhcCceEEeeCCCCCHHHHHHHHHhcCeeEEecchHHHHHHHhhhhccC------------------------
Confidence 8767788999999999863 99999999999999999999999999876433221
Q ss_pred CCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC-------
Q 010515 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE------- 433 (508)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~------- 433 (508)
...+++|.+++||+++++++.+.+ +.+|+++++.||+||++++++......
T Consensus 290 ---------------------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~ 347 (541)
T 1v25_A 290 ---------------------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSE 347 (541)
T ss_dssp ---------------------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGSSEEEECCCCGGGTTSCH
T ss_pred ---------------------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccccceecccccccccccCc
Confidence 112489999999999999999999 568999999999999998777654331
Q ss_pred ---cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010515 434 ---MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 434 ---~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
....+++|+|+++++++|+| ++++.++.+.++.|||+|+||+++.||||+|+.|.+.| .||||+|||+|+++
T Consensus 348 ~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~~g~~~TGDlg~~d 423 (541)
T 1v25_A 348 EEKLTLKAKTGLPIPLVRLRVAD-EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWD 423 (541)
T ss_dssp HHHHHHHTSCBEECTTCEEEEEC-TTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCTTSCEEEEEEEEEC
T ss_pred cccccccCCCCCcCCCcEEEEEC-CCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccCCCCeEcCCEEEEc
Confidence 02247899999999999999 88887776555789999999999999999999999999 59999999999985
No 3
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=100.00 E-value=6.7e-60 Score=496.00 Aligned_cols=406 Identities=20% Similarity=0.293 Sum_probs=326.8
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhH
Q 010515 37 PAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW 116 (508)
Q Consensus 37 ~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~ 116 (508)
+..+....|+.++|.++++++||++|++... +...+ +++||+||.++++++|+.|++.|+++||+|+|+++|++++
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~a~~a~~--~~~~~--~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~ 88 (550)
T 3rix_A 13 PFYPLEDGTAGEQLHKAMKRYALVPGTIAFT--DAHIE--VNITYAEYFEMSVRLAEAMKRYGLNTNHRIVVCSENSLQF 88 (550)
T ss_dssp CSSCCCCSCHHHHHHHHHHHHHTSTTCEEEE--ETTTC--CEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECSSCTTT
T ss_pred CCCCcccCCHHHHHHHHHHhCCCCceEEEee--ecCCC--cEeEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEcCCcccH
Confidence 4444556899999999999999999987331 22111 5799999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcC
Q 010515 117 IIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (508)
Q Consensus 117 ~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~ 196 (508)
++++|||+++|++++|+++.++.+++.++++.++++++|++.+....+....... +.++.++.++.....
T Consensus 89 ~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~--------- 158 (550)
T 3rix_A 89 FMPVLGALFIGVAVAPANDIYNERELLNSMNISQPTVVFVSKKGLQKILNVQKKL-PIIQKIIIMDSKTDY--------- 158 (550)
T ss_dssp HHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGHHHHHHHHHHC-TTCCEEEETTCSSCB---------
T ss_pred HHHHHHHHHcCCEEeecCCcCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHHhhC-CCcceEEEEcCCccc---------
Confidence 9999999999999999999999999999999999999999998777665543333 556777776553211
Q ss_pred cEEeeHHHHHHcccCCC-----C-CCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcE
Q 010515 197 LAVYSWDEFLQLGENKQ-----F-DLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDV 270 (508)
Q Consensus 197 ~~~~~~~~l~~~~~~~~-----~-~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~ 270 (508)
....++.++........ . +.....++++++|+|||||||.||||.++|+++...+......+ ....+.++++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~--~~~~~~~~~~ 236 (550)
T 3rix_A 159 QGFQSMYTFVTSHLPPGFNEYDFVPESFDRDKTIALIMNSSGSTGLPKGVALPHRTACVRFSHARDPI--FGNQIIPDTA 236 (550)
T ss_dssp TTBCBHHHHHHHHCCTTCCTTTCCCCCCCTTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHHTCTT--TSCCCCTTCE
T ss_pred cCcccHHHHhhccccccccccccCCCCCCCCCCEEEEEECCCcccCcchhhhhHHHHHHHHHHhhhhh--ccccCCCCcE
Confidence 12345666665432211 1 11122457899999999999999999999999988876643321 1135778999
Q ss_pred EEEecChHHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHH
Q 010515 271 YVSYLPLAHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNI 349 (508)
Q Consensus 271 ~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~ 349 (508)
+++.+|++|.+++...+.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+.+..
T Consensus 237 ~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~----------------- 299 (550)
T 3rix_A 237 ILSVVPFHHGFGMFTTLGYLICGFRVVLMYRFEEELFLRSLQDYKIQSALLVPTLFSFFAKST----------------- 299 (550)
T ss_dssp EEECSCTTSHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCC-----------------
T ss_pred EEEechHHHHHHHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCc-----------------
Confidence 9999999999999888888999999999876 9999999999999999999999999886521
Q ss_pred HHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCc-eEeccCcccCCcceec
Q 010515 350 AYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAH-VLQGYGLTETCAGTFV 428 (508)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~-v~~~yG~tE~~~~~~~ 428 (508)
..+.. ..+++|.+++||+++++++.+.+++.++.. +++.||+||+++.++.
T Consensus 300 --------------------~~~~~--------~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~ 351 (550)
T 3rix_A 300 --------------------LIDKY--------DLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILI 351 (550)
T ss_dssp --------------------GGGGS--------CCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGGSSEEEE
T ss_pred --------------------ccccc--------CcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCccccceec
Confidence 11111 124899999999999999999999999875 9999999999988777
Q ss_pred cCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010515 429 SLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 429 ~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
..... ...+++|+|+|+++++|+|.+++..+ +.|+.|||+|+||+++.||||+|+.|.+.| .+|||+|||+|++.
T Consensus 352 ~~~~~-~~~~~vG~~~~~~~~~i~d~~~~~~~--~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~~~ 427 (550)
T 3rix_A 352 TPEGD-DKPGAVGKVVPFFEAKVVDLDTGKTL--GVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWD 427 (550)
T ss_dssp CCTTC-CCTTEEEEECTTCEEEEECTTTCCBC--CTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred CCCCC-CCCCCcccccCCcEEEEEeCCCCcCC--CCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEEEe
Confidence 66544 34589999999999999994445444 456899999999999999999999999999 89999999999975
No 4
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=100.00 E-value=6.9e-60 Score=494.36 Aligned_cols=411 Identities=21% Similarity=0.247 Sum_probs=332.4
Q ss_pred CCCceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCC
Q 010515 22 SIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVE 101 (508)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~ 101 (508)
.+..+|++..+...+|. ..++.++|.++++++||++|+++. ++. +++||+||.++++++|+.|++.|++
T Consensus 4 ~~~~i~~~~~~~~~~p~----~~~l~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv~ 72 (536)
T 3ni2_A 4 QEEFIFRSKLPDIYIPK----NLPLHSYVLENLSNHSSKPCLING---ANG----DVYTYADVELTARRVASGLNKIGIQ 72 (536)
T ss_dssp -CCCCBCCSSCCCCCCS----SCCHHHHHTTTGGGSTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccceEEecCCCCCCCCC----CCcHHHHHHHHhhcCCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHHcCCC
Confidence 44567777666554443 489999999999999999999864 322 5799999999999999999999999
Q ss_pred CCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEe
Q 010515 102 ERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSF 181 (508)
Q Consensus 102 ~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~ 181 (508)
+||+|+|+++|++++++++|||+++|++++|+++.++.+++.++++.++++++|++......+.+..... .+ .++.+
T Consensus 73 ~gd~V~i~~~~~~~~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~~--~~-~~~~~ 149 (536)
T 3ni2_A 73 QGDVIMLFLPSSPEFVLAFLGASHRGAIITAANPFSTPAELAKHAKASRAKLLITQACYYEKVKDFARES--DV-KVMCV 149 (536)
T ss_dssp TTCEEEEECCSSHHHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHHHHHHH--TC-EEEES
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHhCCEEeccCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHHHHhhc--Cc-eEEEe
Confidence 9999999999999999999999999999999999999999999999999999999987666554432211 22 34444
Q ss_pred CCCChhhHHHHhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhc
Q 010515 182 SKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESV 261 (508)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~ 261 (508)
+.... ....++++...... ..+.....++++++|+|||||||.||||+++|+++.+.+....... ..
T Consensus 150 ~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-~~ 216 (536)
T 3ni2_A 150 DSAPD-----------GCLHFSELTQADEN-EAPQVDISPDDVVALPYSSGTTGLPKGVMLTHKGLITSVAQQVDGD-NP 216 (536)
T ss_dssp SCCCT-----------TCEETHHHHTSCGG-GCCCCCCCTTSEEECCEECTTSSSCEEEEEEHHHHHHHHHHHHCSS-SC
T ss_pred cCCCC-----------CccCHHHHhhcccc-ccccCCCCccCEEEEEcCCCccccchHHHhhHHHHHHHHHHHHhhc-cc
Confidence 43221 24556666654322 2233345789999999999999999999999999988876543211 11
Q ss_pred ccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhcc
Q 010515 262 NEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSG 339 (508)
Q Consensus 262 ~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~ 339 (508)
...+.++|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+.+..
T Consensus 217 ~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~------- 289 (536)
T 3ni2_A 217 NLYFHSEDVILCVLPMFHIYALNSIMLCGLRVGAPILIMPKFEIGSLLGLIEKYKVSIAPVVPPVMMSIAKSP------- 289 (536)
T ss_dssp SSCCCTTCCEEECSCTTSHHHHHHTHHHHHHHTCCEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTCS-------
T ss_pred cccCCCCCEEEEecChHHHHHHHHHHHHHHhcCCEEEEcCCCCHHHHHHHHHHhCCeEEEccHHHHHHHHhCc-------
Confidence 235778999999999999999966 6777999999999876 9999999999999999999999999876521
Q ss_pred ChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccC
Q 010515 340 GLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYG 418 (508)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG 418 (508)
..+.. ..+++|.+++||+++++++.+.+++.+ ++.+++.||
T Consensus 290 ------------------------------~~~~~--------~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG 331 (536)
T 3ni2_A 290 ------------------------------DLDKH--------DLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYG 331 (536)
T ss_dssp ------------------------------CGGGS--------CCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEE
T ss_pred ------------------------------ccccC--------CCccceEEEECCCCCCHHHHHHHHHHCCCCCcccccc
Confidence 11111 124899999999999999999999988 899999999
Q ss_pred cccCCcceeccCC----CCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-c
Q 010515 419 LTETCAGTFVSLP----NEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V 493 (508)
Q Consensus 419 ~tE~~~~~~~~~~----~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~ 493 (508)
+||++++++.+.. .....++++|+|+++++++|+|.+++..++ .|+.|||+|+||+++.||||+|+.|.+.| .
T Consensus 332 ~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~--~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~ 409 (536)
T 3ni2_A 332 MTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLP--RNQPGEICIRGDQIMKGYLNDPEATSRTIDK 409 (536)
T ss_dssp CGGGSSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCC--TTCCEEEEEESTTSCSEETTCHHHHHHHBCT
T ss_pred ccccchhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCC--CCCccEEEEeCcccchhhcCChhHHHhhccC
Confidence 9999987665421 122345899999999999999944455554 55899999999999999999999999999 7
Q ss_pred cCceecCcccccc
Q 010515 494 DGWFHTGCPHLFL 506 (508)
Q Consensus 494 ~gw~~TGD~g~~~ 506 (508)
+|||+|||+|+++
T Consensus 410 ~g~~~TGDl~~~~ 422 (536)
T 3ni2_A 410 EGWLHTGDIGYID 422 (536)
T ss_dssp TSCEEEEEEEEEC
T ss_pred CCceEcccEEEEc
Confidence 9999999999975
No 5
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=100.00 E-value=4.9e-59 Score=488.61 Aligned_cols=390 Identities=13% Similarity=0.150 Sum_probs=321.8
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010515 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
..|+.++|+++++++||++|+++. + +++||+||.++++++|+.|++.|+++||+|+|+++|++++++++||
T Consensus 29 ~~tl~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~lA 99 (544)
T 3o83_A 29 DQPLTRILTVGVQSHPHSLAIICG----E-----RQLSYIELDRLSTNLATRLAEKGLGKGDTALVQLPNVAEFYIVFFA 99 (544)
T ss_dssp CCCTTHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCceEEEcC----C-----CceeHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHHHHHH
Confidence 478999999999999999999864 2 6899999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHH----HHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcE
Q 010515 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~ 198 (508)
|+++|++++|+++.++.+++.+++++++++++|++..... ...+...........++..+....
T Consensus 100 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 167 (544)
T 3o83_A 100 LLKAGVVVLNALYSHRQYELNAFIKQIQPKLLIGSRQHEVFSNNQFIDSLHDVNLSPEIILMLNHQAT------------ 167 (544)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHHTTCCCSEEEEETCCTT------------
T ss_pred HHHhCcEEecCCCCCCHHHHHHHHHhcCeeEEEEccccccccHHHHHHHHhhcccCcceEEEecCCcc------------
Confidence 9999999999999999999999999999999999986531 111111111244556666554321
Q ss_pred EeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChH
Q 010515 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (508)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 278 (508)
...+.++...............++++++|+|||||||.||||+++|+++.+.+......+ ++.++|++++.+|++
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 242 (544)
T 3o83_A 168 DFGLLDWIETPAETFVDFSSTPADEVAFFQLSGGSTGTPKLIPRTHNDYDYSVRASAEIC-----GLNSNTRLLCALPAP 242 (544)
T ss_dssp SEEHHHHHHSCCSSCCCCCCCCTTSEEEEEECCC--CCCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTT
T ss_pred ccchhhhhhcccccccccccCCccceEEEEECCCcccCCceEEechHHHHHHHHHHHHHh-----CCCCCCeEEEecCcc
Confidence 123455554433332233455789999999999999999999999999999998865544 788999999999999
Q ss_pred HHHHHHH--HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHH
Q 010515 279 HIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (508)
Q Consensus 279 ~~~g~~~--~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (508)
|.+++.. .+.++..|+++++.+. ++..+++.|+++++|+++++|+++..+++....
T Consensus 243 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------- 301 (544)
T 3o83_A 243 HNFMLSSPGALGVLHAGGCVVMAPNPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQ--------------------- 301 (544)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTT---------------------
T ss_pred eEeecchHHHHHHHHcCCEEEECCCCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhh---------------------
Confidence 9999874 6777999999999876 999999999999999999999999998763221
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcc
Q 010515 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (508)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~ 435 (508)
...++ +++|.+++||+++++++.+.+++.+++.+++.||+||++..+.........
T Consensus 302 ----------------~~~~~--------~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 357 (544)
T 3o83_A 302 ----------------YKDQI--------QSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGLVNYTRLDDSDEQ 357 (544)
T ss_dssp ----------------THHHH--------TTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred ----------------ccccC--------CcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeeccccccceeecCCCchhh
Confidence 11112 489999999999999999999999999999999999998655544333333
Q ss_pred cCCcccccc-cCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010515 436 MIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 436 ~~~s~G~p~-~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
..+++|+|+ ++++++|+| +++++++. |+.|||+|+||+++.||||+|+.|.+.| .+|||+|||+|+++
T Consensus 358 ~~~~~G~p~~~~~~~~i~d-~~~~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~ 427 (544)
T 3o83_A 358 IFTTQGRPISSDDEIKIVD-EQYREVPE--GEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRT 427 (544)
T ss_dssp HHHCCCEESCTTCEEEEEC-TTSCBCCT--TCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEEEC
T ss_pred ccCCCceecCCCcEEEEEC-CCCCCCCC--CCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEEEc
Confidence 347899996 899999999 88876655 4899999999999999999999999999 79999999999875
No 6
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=100.00 E-value=9.9e-59 Score=483.26 Aligned_cols=389 Identities=22% Similarity=0.284 Sum_probs=318.1
Q ss_pred CCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHH
Q 010515 39 PIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII 118 (508)
Q Consensus 39 ~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~ 118 (508)
..+...|+.++|+++++++||++|+++. +.. +++||+||.++++++|+.|++.|+++||+|+|+++|++++++
T Consensus 11 ~~~~~~~l~~~l~~~a~~~p~~~A~~~~---~~~----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~ 83 (517)
T 3r44_A 11 DDDKMKNIGWMLRQRATVSPRLQAYVEP---STD----VRMTYAQMNALANRCADVLTALGIAKGDRVALLMPNSVEFCC 83 (517)
T ss_dssp -CGGGGCHHHHHHHHHHHSTTSEEEEEG---GGT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHH
T ss_pred CcccccCHHHHHHHHHHhCCCCeEEEeC---CcC----ceeeHHHHHHHHHHHHHHHHHcCCCCcCEEEEEcCCCHHHHH
Confidence 4567889999999999999999999875 322 579999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcE
Q 010515 119 GMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (508)
Q Consensus 119 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~ 198 (508)
++|||+++|++++|+++.++.+++.+++++++++++|++......+....... .....++....
T Consensus 84 ~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~--------------- 147 (517)
T 3r44_A 84 LFYGAAKLGAVAVPINTRLAAPEVSFILSDSGSKVVIYGAPSAPVIDAIRAQA-DPPGTVTDWIG--------------- 147 (517)
T ss_dssp HHHHHHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHHHHHHSS-SCCTTCCEEEE---------------
T ss_pred HHHHHHHhCcEEEecCcccCHHHHHHHHHhcCceEEEECCchHHHHHHHHhcc-CCccEEEEccC---------------
Confidence 99999999999999999999999999999999999999987765554332211 11111111110
Q ss_pred EeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChH
Q 010515 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (508)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 278 (508)
...+.+.+.... ...+.....++++++|+|||||||.||||+++|+++.+.+..+...+ ++..+|++++.+|++
T Consensus 148 ~~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 221 (517)
T 3r44_A 148 ADSLAERLRSAA-ADEPAVECGGDDNLFIMYTSGTTGHPKGVVHTHESVHSAASSWASTI-----DVRYRDRLLLPLPMF 221 (517)
T ss_dssp HHHHHHHHHHCC-CCCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHS-----CCCTTCEEEECSCTT
T ss_pred cccHHHHhhccC-cCCCCCCCCCCCeEEEEECCcccccCceeeeeHHHHHHHHHHHHHhc-----CCCCCCEEEEeCchH
Confidence 012333333221 12233455789999999999999999999999999999988855544 788999999999999
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhh
Q 010515 279 HIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (508)
Q Consensus 279 ~~~g~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (508)
|.+++...+.+++.|+++++.+. ++..+++.|+++++|++.++|+++..+.+.....
T Consensus 222 ~~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---------------------- 279 (517)
T 3r44_A 222 HVAALTTVIFSAMRGVTLISMPQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFA---------------------- 279 (517)
T ss_dssp SHHHHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHH----------------------
T ss_pred HHHHHHHHHHHHhcCeEEEEeCCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccc----------------------
Confidence 99999876666569999999876 9999999999999999999999999887622111
Q ss_pred hhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC-ccc
Q 010515 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MSM 436 (508)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-~~~ 436 (508)
....+++|.+++||+++++++.+.+++. ++.+++.||+||+++.++...... ...
T Consensus 280 -----------------------~~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~~~~~~~~~~~~~~~ 335 (517)
T 3r44_A 280 -----------------------ELDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESCGGGTLLLSEDALRK 335 (517)
T ss_dssp -----------------------HCCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGTTCEEEECGGGTTTT
T ss_pred -----------------------cCCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccccceeecCCcccccc
Confidence 1122589999999999999999999986 999999999999988776554433 344
Q ss_pred CCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010515 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 437 ~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
.+++|+|+++++++|+| +++..++.+ .|||+|+||+++.||||+|+.|.+.|.+|||+|||+|++.
T Consensus 336 ~~~~G~~~~~~~~~i~d-~~~~~~~~g---~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~~ 401 (517)
T 3r44_A 336 AGSAGRATMFTDVAVRG-DDGVIREHG---EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEID 401 (517)
T ss_dssp TTCCBEECTTEEEEEEC-TTSCEESSE---EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEEC
T ss_pred CCCCCcCCCCeEEEEEC-CCCCCCCCC---CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEEc
Confidence 58999999999999999 777666554 7999999999999999999999999999999999999975
No 7
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=100.00 E-value=2.3e-58 Score=486.18 Aligned_cols=396 Identities=17% Similarity=0.167 Sum_probs=323.5
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010515 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
..++...++|+++++++||++|+++. +.. +..+++||+||.++++++|+.|++.|+++||+|+|+++|++++++++
T Consensus 53 ~~~n~~~~~l~~~a~~~pd~~Al~~~---~~~-g~~~~~Ty~eL~~~~~~~A~~L~~~Gv~~Gd~V~l~~~~~~e~~~~~ 128 (580)
T 3etc_A 53 ENFNFAYDVVDVYARDSPEKLAMIWC---DDY-GNEKIFTFKDLKYYSDKAANFFVKHGIGKGDYVMLTLKSRYDFWYCM 128 (580)
T ss_dssp SSCCHHHHTHHHHHHHCTTCEEEEEE---ESS-SCEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECTTCTHHHHHH
T ss_pred ccchHHHHHHHHHHhhCCCCEEEEEE---cCC-CCEeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHH
Confidence 45566669999999999999999986 432 33478999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCH--HHHhhcCCCCCCCc-cEEEEeCCCChhhHHHHhhcCc
Q 010515 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI--PEMLKTFPKTTEHL-KTIVSFSKVKPEQREEIEKYGL 197 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~--~~~~~~~~~~~~~l-~~vi~~~~~~~~~~~~~~~~~~ 197 (508)
|||+++|++++|+++.++.+++..++++++++++|++.+.. ..+....... +.+ ..++.++.... .
T Consensus 129 lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~----------~ 197 (580)
T 3etc_A 129 LGLHKLGAIAVPATHMLKTRDIVYRIEKAGLKMIVCIAEDDVPEQVDEAHAEC-GDIPLKKAKVGGDVL----------E 197 (580)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCCEEEEESSTTHHHHHHHHHHHH-CSCCCEEEEESSSCC----------T
T ss_pred HHHHhCCEEEEeCCccCCHHHHHHHHHhcCCCEEEEecchhHHHHHHHHhhhC-CCcceEEEEeCCccc----------c
Confidence 99999999999999999999999999999999999988754 3333332222 233 34555443211 1
Q ss_pred EEeeHHHHHHcccCCCCCC---CCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEe
Q 010515 198 AVYSWDEFLQLGENKQFDL---PVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSY 274 (508)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~---~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 274 (508)
....+.+.+.........+ ....++++++|+|||||||.||+|.++|.+++..+.... ...++.+++++++.
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 272 (580)
T 3etc_A 198 GWIDFRKELEESSPIFERPTGEVSTKNEDICLVYFSSGTAGFPKMVEHDNTYPLGHILTAK-----YWQNVEDDGLHYTV 272 (580)
T ss_dssp TCEEHHHHHHHSCSCCCCCCGGGSCCTTSEEEEEEECCSSSSCEEEEEETTHHHHHHHHHH-----TTSCCCTTCEEEEC
T ss_pred ccccHHHHHhhCCcccccCccccCCCCCCcEEEEEeCCCCCCccEEEeccHHHHHHHHHHH-----HhhCCCCCceEEEe
Confidence 3556777665543322111 245789999999999999999999999999888776532 23467889999999
Q ss_pred cChHHHHHHHH-HHHHHHcCCEEEEec---CCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHH
Q 010515 275 LPLAHIFDRAI-EEVFISNGAAIGFWR---GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIA 350 (508)
Q Consensus 275 ~p~~~~~g~~~-~~~~l~~G~~vv~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 350 (508)
.|++|..+.+. ++.++..|+++++.+ +++..+++.|+++++|+++++|++++.|.+..
T Consensus 273 ~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~------------------ 334 (580)
T 3etc_A 273 ADSGWGKCVWGKLYGQWIAGCAVFVYDYDRFEAKNMLEKASKYGVTTFCAPPTIYRFLIKED------------------ 334 (580)
T ss_dssp CCTTSTHHHHHTTHHHHHTTCEEEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHTSC------------------
T ss_pred CChHHHHHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHCCeEEEccHHHHHHHHhcc------------------
Confidence 99998877765 677799999999874 38999999999999999999999999876410
Q ss_pred HHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccC
Q 010515 351 YSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSL 430 (508)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~ 430 (508)
... ...+++|.+++||+++++++.+.+++.+|+.+++.||+||+++.++...
T Consensus 335 --------------------~~~--------~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~ 386 (580)
T 3etc_A 335 --------------------LSH--------YNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETVVTIATFP 386 (580)
T ss_dssp --------------------C-----------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSSCCEECCT
T ss_pred --------------------ccc--------CCCccceEEEEccCCCCHHHHHHHHHHhCCeEecccccccccceeecCC
Confidence 000 1124899999999999999999999999999999999999987766554
Q ss_pred CCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEec-----CcccccccCChhhhhhhcccCceecCccccc
Q 010515 431 PNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG-----STVFSGYYKREDLTKEVMVDGWFHTGCPHLF 505 (508)
Q Consensus 431 ~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g-----~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~ 505 (508)
.. ...++++|+|+|+++++|+| ++++.++. |+.|||+|+| ++++.|||++|+.|.+.|.+|||+|||+|++
T Consensus 387 ~~-~~~~~~~G~p~~~~~v~ivd-~~g~~~~~--g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDlg~~ 462 (580)
T 3etc_A 387 WM-EPKPGSIGKPTPGYKIELMD-RDGRLCEV--GEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWM 462 (580)
T ss_dssp TS-CCCTTCCBEECTTCEEEEEC-TTSCBCCT--TCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEEEEE
T ss_pred CC-CCCCCccccCCCCCEEEEEC-CCCCCCCC--CCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcEEEE
Confidence 43 33458999999999999999 88776655 4899999997 7899999999999999999999999999997
Q ss_pred c
Q 010515 506 L 506 (508)
Q Consensus 506 ~ 506 (508)
+
T Consensus 463 d 463 (580)
T 3etc_A 463 D 463 (580)
T ss_dssp C
T ss_pred C
Confidence 4
No 8
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=100.00 E-value=1.6e-58 Score=484.83 Aligned_cols=412 Identities=22% Similarity=0.281 Sum_probs=325.9
Q ss_pred CCCceeecCccCCCCCCCCCCCCCHHH-HHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCC
Q 010515 22 SIGPVYRSLFAKDGFPAPIPGMESCWD-VFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGV 100 (508)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~tl~~-~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv 100 (508)
..+++|++..+....| ...++.+ +|.++++++ |++|+++. +.. +++||+||.++++++|+.|++.|+
T Consensus 7 ~~~~~~~~~~~~~~~p----~~~~l~~~~l~~~~~~~-~~~A~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~~Gv 74 (548)
T 2d1s_A 7 DENIVVGPKPFYPIEE----GSAGTQLRKYMERYAKL-GAIAFTNA---VTG----VDYSYAEYLEKSCCLGKALQNYGL 74 (548)
T ss_dssp CTTSEECCCCSSCCCS----SCHHHHHHHHHHHHHHH-TCEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHHHTC
T ss_pred CcceEecCCCCCCCCC----CcCcHHHHHHHhhhccc-CCceEEEc---CCC----CEeeHHHHHHHHHHHHHHHHHcCC
Confidence 3446677665433222 2368999 899999999 99999863 222 579999999999999999999999
Q ss_pred CCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEE
Q 010515 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVS 180 (508)
Q Consensus 101 ~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~ 180 (508)
++||+|+|+++|++++++++|||+++|++++|+++.++.+++.+++++++++++|++......+....... +....++.
T Consensus 75 ~~gd~V~i~~~n~~e~~~~~la~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~ 153 (548)
T 2d1s_A 75 VVDGRIALCSENCEEFFIPVIAGLFIGVGVAPTNEIYTLRELVHSLGISKPTIVFSSKKGLDKVITVQKTV-TTIKTIVI 153 (548)
T ss_dssp CTTCEEEEECSSCTTTHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHCCSEEEECTTTHHHHHHHHHHS-TTCCEEEE
T ss_pred CCCCEEEEEeCCchhHHHHHHHHHhhCCEEeccCCCCCHHHHHHHHHhcCCeEEEEcHHHHHHHHHHhcCC-CCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999998776654432211 22445665
Q ss_pred eCCCChhhHHHHhhcCcEEeeHHHHHHcccCCCCCCCCCC-----C-CCeEEEEeccCCCCCcceEEeehHHHHHHHhhh
Q 010515 181 FSKVKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKK-----K-NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGV 254 (508)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~-~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~ 254 (508)
++..... .....++++.........+..... + +++++|+|||||||.||||.++|+++...+...
T Consensus 154 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~~~~~~~~~ 224 (548)
T 2d1s_A 154 LDSKVDY---------RGYQCLDTFIKRNTPPGFQASSFKTVEVDRKEQVALIMNSSGSTGLPKGVQLTHENIVTRFSHA 224 (548)
T ss_dssp TTCSSCB---------TTBCBHHHHHHHTSCTTCCGGGCCCCCCCTTTCEEEEECCSSCSSSCCCEEEEHHHHHHHHHHH
T ss_pred eCCcccc---------cccccHHHHHhcCccccCCcccccccccCCCCCEEEEEeCCCCCCCCCEEEecHHHHHHHHHHh
Confidence 5432100 012346666654321101111112 4 899999999999999999999999999888774
Q ss_pred hhhhhhcccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHH
Q 010515 255 KCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGL 332 (508)
Q Consensus 255 ~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~ 332 (508)
...+ ....+.++|++++.+|++|.+++.. ++.++ .|+++++.+. ++..+++.|+++++|+++++|+++..+.+..
T Consensus 225 ~~~~--~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~ 301 (548)
T 2d1s_A 225 RDPI--YGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLTKFDEETFLKTLQDYKCTSVILVPTLFAILNKSE 301 (548)
T ss_dssp TCTT--TSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECCCCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCS
T ss_pred hchh--hccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcCCCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCc
Confidence 4321 1136778999999999999999876 44556 9999999875 9999999999999999999999999886511
Q ss_pred HHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CC
Q 010515 333 NQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CA 411 (508)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~ 411 (508)
..+.. ..+++|.+++||+++++++.+.+++.+ ++
T Consensus 302 -------------------------------------~~~~~--------~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~ 336 (548)
T 2d1s_A 302 -------------------------------------LLNKY--------DLSNLVEIASGGAPLSKEVGEAVARRFNLP 336 (548)
T ss_dssp -------------------------------------CGGGS--------CCTTCCEEEECSSCCCHHHHHHHHHHTTCS
T ss_pred -------------------------------------ccccc--------cccceeEEEEcCccCCHHHHHHHHHHcCCC
Confidence 01111 124899999999999999999999988 68
Q ss_pred ceEeccCcccCCcceeccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhh
Q 010515 412 HVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEV 491 (508)
Q Consensus 412 ~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~ 491 (508)
.+++.||+||++++++..... ....+++|+|+|+++++|+|.+++..++ .|+.|||+|+||+++.||||+|+.|.+.
T Consensus 337 ~i~~~YG~TE~~~~~~~~~~~-~~~~~~~G~~~~~~~~~i~d~~~~~~~~--~g~~GEl~v~g~~v~~GY~~~~~~t~~~ 413 (548)
T 2d1s_A 337 GVRQGYGLTETTSAIIITPEG-DDKPGASGKVVPLFKAKVIDLDTKKSLG--PNRRGEVCVKGPMLMKGYVNNPEATKEL 413 (548)
T ss_dssp CCEEEEECGGGSSEEEECCTT-CCCTTCCBEECTTCEEEEECTTTCCBCC--TTCCEEEEEESTTSCSEETTCHHHHHHH
T ss_pred ceeeccccccccceeeecCcc-cCCCCCCCccCCCceEEEEeCCcCccCC--CCCCeEEEECCHHHhhhhcCChHHhhhc
Confidence 899999999999877664433 2345899999999999999944555444 5689999999999999999999999999
Q ss_pred c-ccCceecCcccccc
Q 010515 492 M-VDGWFHTGCPHLFL 506 (508)
Q Consensus 492 f-~~gw~~TGD~g~~~ 506 (508)
| .+|||+|||+|+++
T Consensus 414 f~~~g~~~TGDl~~~~ 429 (548)
T 2d1s_A 414 IDEEGWLHTGDIGYYD 429 (548)
T ss_dssp BCTTSCEEEEEEEEEC
T ss_pred ccCCcEEEccCEEEEc
Confidence 9 79999999999975
No 9
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=100.00 E-value=1.6e-58 Score=484.20 Aligned_cols=386 Identities=15% Similarity=0.174 Sum_probs=313.1
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010515 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
..|+.++|+++++++||++|+++. + +++||+||.++++++|+.|+++|+++||+|+|+++|++++++++||
T Consensus 24 ~~tl~~~l~~~a~~~p~~~A~~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 94 (539)
T 1mdb_A 24 GETFGDLLRDRAAKYGDRIAITCG----N-----THWSYRELDTRADRLAAGFQKLGIQQKDRVVVQLPNIKEFFEVIFA 94 (539)
T ss_dssp SCCHHHHHHHHHHHHTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCEEEEeC----C-----CcccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHHHH
Confidence 468999999999999999999864 2 5799999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHH----HHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcE
Q 010515 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP----EMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLA 198 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~----~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~ 198 (508)
|+++|++++|+++.++.+++.++++.++++++|++..... ..........+.++.++..+....
T Consensus 95 ~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 162 (539)
T 1mdb_A 95 LFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIVAGEAEE------------ 162 (539)
T ss_dssp HHHHTCEEEECCTTCCHHHHHHHHHHTTCSEEEEESEETTEEHHHHHHHHHHHCTTCCCEEEESCCTT------------
T ss_pred HHHcCeEEecCCCCCCHHHHHHHHHhCCCCEEEeccccccccHHHHHHHHHhcCCCccEEEEcCCccc------------
Confidence 9999999999999999999999999999999999875321 111111011144555555443210
Q ss_pred EeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChH
Q 010515 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (508)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 278 (508)
+.++.... ......+...++++++++|||||||.||||+++|+++.+.+......+ ++.++|++++.+|++
T Consensus 163 ---~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~ 233 (539)
T 1mdb_A 163 ---FLPLEDLH-TEPVKLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVC-----WLDHSTVYLAALPMA 233 (539)
T ss_dssp ---SEEGGGCC-CCCCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSCTT
T ss_pred ---hhhhhhcc-ccccccCCCCcCceEEEEeCCCcCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCCEEEEeeccc
Confidence 11111111 111122345779999999999999999999999999999888765544 678899999999999
Q ss_pred HHHHHHH--HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHH
Q 010515 279 HIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (508)
Q Consensus 279 ~~~g~~~--~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (508)
|.+++.. ++.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+.+......
T Consensus 234 h~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~------------------- 294 (539)
T 1mdb_A 234 HNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRR------------------- 294 (539)
T ss_dssp SHHHHHSSHHHHHHHTTCEEEECSSSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-------------------
T ss_pred ccchhhHHHHHHHHHhCCEEEECCCCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccC-------------------
Confidence 9999874 7778999999999876 99999999999999999999999999876432211
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcc
Q 010515 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (508)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~ 435 (508)
...+++|.+++||+++++++.+.+++.+|+.+++.||+||++..+.........
T Consensus 295 --------------------------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~ 348 (539)
T 1mdb_A 295 --------------------------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGLVNYTRLDDPEEI 348 (539)
T ss_dssp --------------------------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSCEEECCTTSCHHH
T ss_pred --------------------------CCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCcccccCCCCcHHh
Confidence 112489999999999999999999999999999999999965433322211122
Q ss_pred cCCcccccccC-eeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010515 436 MIGTVGPPVPN-VDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 436 ~~~s~G~p~~~-~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
..+++|+|+++ .+++|+| +++++++. |+.|||+|+||+++.||||+|+.|.+.| .+|||+|||+|+++
T Consensus 349 ~~~~~G~p~~~~~~~~i~d-~~~~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~~~ 418 (539)
T 1mdb_A 349 IVNTQGKPMSPYDESRVWD-DHDRDVKP--GETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLT 418 (539)
T ss_dssp HHHCCCEESSTTCEEEEEC-TTSCBCCT--TCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred cCCCCCcccCCCceEEEEC-CCCCCCcC--CCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEEEC
Confidence 34789999976 5899999 77776655 5899999999999999999999999999 79999999999985
No 10
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=100.00 E-value=1.3e-57 Score=474.33 Aligned_cols=381 Identities=20% Similarity=0.263 Sum_probs=315.1
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHH
Q 010515 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (508)
Q Consensus 42 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (508)
...|+.++|+++++++||++|+++. + +++||+||.++++++|+.|++.|+++||+|+|+++|++++++++|
T Consensus 4 ~~~tl~~~l~~~a~~~pd~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~l 74 (509)
T 3ivr_A 4 HDFTLADVYRRNAALFPDRTAFMVD----G-----VRLTHRDYLARAERLASGLLRDGVHTGDRVAILSQNCSEMIELIG 74 (509)
T ss_dssp TCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHCCCceEEEEC----C-----cEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHH
Confidence 4579999999999999999999864 2 689999999999999999999999999999999999999999999
Q ss_pred HHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEee
Q 010515 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (508)
Q Consensus 122 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~ 201 (508)
||+++|++++|+++.++.+++.++++.++++++|++.+....+....... ..+..++.+++... .
T Consensus 75 A~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------------~ 139 (509)
T 3ivr_A 75 AVALIGAILLPVNYRLNADEIAFVLGDGAPSVVVAGTDYRDIVAGVLPSL-GGVKKAYAIGDGSG--------------P 139 (509)
T ss_dssp HHHHTTCEEEECCTTSCHHHHHHHHHHHCEEEEEECSTTHHHHHHHGGGC-SSCCEEEESSCCCS--------------S
T ss_pred HHHHhCCEEEecCCCCCHHHHHHHHHhcCceEEEECcchhhhHHhhhccc-CCceEEEEcCCCCc--------------C
Confidence 99999999999999999999999999999999999998877644444322 56667776654221 1
Q ss_pred HHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHH
Q 010515 202 WDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIF 281 (508)
Q Consensus 202 ~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~ 281 (508)
+.++...........+...++++++|+|||||||.||||+++|+++.+.+..+...+ ++.++|++++.+|++|.+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~ 214 (509)
T 3ivr_A 140 FAPFKDLASDTPFSAPEFGAADGFVIIHTAAVGGRPRGALISQGNLLIAQSSLVDAW-----RLTEADVNLGMLPLFHVT 214 (509)
T ss_dssp CEEGGGTCCCSCCCCCCCCTTSEEEEEEEEC--CCEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHH
T ss_pred hhhHhhccCCCCCCcCCCCccccEEEEeCCCCCCCCcEEEEehHHHHHHHHHHHHhh-----CCCCCcEEEEeCCCcchh
Confidence 222222111222334456789999999999999999999999999999988865544 788999999999999999
Q ss_pred HHHHHHHH-HHcCCEEEEecCCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhc
Q 010515 282 DRAIEEVF-ISNGAAIGFWRGDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKK 360 (508)
Q Consensus 282 g~~~~~~~-l~~G~~vv~~~~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (508)
++...+.+ +..|..+++..+++..+++.|+++++|+++++|+++..+++...
T Consensus 215 g~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~--------------------------- 267 (509)
T 3ivr_A 215 GLGLMLTLQQAGGASVIAAKFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAA--------------------------- 267 (509)
T ss_dssp HHHHHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCC---------------------------
T ss_pred HHHHHHHHHHhCCcEEEecccCHHHHHHHHHHHCCcEEEecHHHHHHHHhccc---------------------------
Confidence 99886665 55555555555599999999999999999999999999876320
Q ss_pred CCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCCCcccCCc
Q 010515 361 GHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEMSMIGT 439 (508)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s 439 (508)
.. ..+++|.++++|++ ++.+.+++.+ ++.+++.||+||++++++....... ..+
T Consensus 268 ------------~~--------~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~--~~~ 322 (509)
T 3ivr_A 268 ------------PA--------QLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSETSGLSTFAPYRDR--PKS 322 (509)
T ss_dssp ------------GG--------GGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGGTEEEEEEEGGGS--TTS
T ss_pred ------------cc--------chhhhheecccCCh---HHHHHHHHhcCCCeEEcccCccccccccccCccccC--CCc
Confidence 00 11379999999987 7788888887 8999999999999987776554322 256
Q ss_pred ccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010515 440 VGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 440 ~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
+|+|+++++++|+| +++++++. |+.|||+|+||+++.|||++|+.|.+.|.+|||+|||+|+++
T Consensus 323 ~G~p~~~~~~~i~d-~~~~~~~~--g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~ 386 (509)
T 3ivr_A 323 AGRPLFWRTVAVVD-AEDRPLPP--GEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFD 386 (509)
T ss_dssp CCEECTTCEEEEEC-TTSCBCCT--TCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEEC
T ss_pred ccccCCCcEEEEEC-CCCCCCCC--CCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEEC
Confidence 99999999999999 77776655 489999999999999999999999999999999999999875
No 11
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=100.00 E-value=1.8e-57 Score=472.57 Aligned_cols=378 Identities=18% Similarity=0.216 Sum_probs=303.9
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010515 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
++|+.++|+++++++||++|+.+. +.. +++||+||.++++++|+.|++.|+++||+|+|+++|++++++++||
T Consensus 1 M~tl~~~l~~~a~~~p~~~a~~~~---~~~----~~~Ty~el~~~~~~~A~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA 73 (504)
T 1t5h_X 1 MQTVNEMLRRAATRAPDHCALAVP---ARG----LRLTHAELRARVEAVAARLHADGLRPQQRVAVVAPNSADVVIAILA 73 (504)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEEET---TTT----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHH
T ss_pred CCcHHHHHHHHHHhCCCceEEEEc---CCC----ceeEHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 478999999999999999999864 222 6899999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEE--cCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEe
Q 010515 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFV--EEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~--~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~ 200 (508)
|+++|++++|+++.++.+++.+++++++++++|+ +......+.... ..++ ++
T Consensus 74 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~~~~~----~~~~-~~--------------------- 127 (504)
T 1t5h_X 74 LHRLGAVPALLNPRLKSAELAELIKRGEMTAAVIAVGRQVADAIFQSG----SGAR-II--------------------- 127 (504)
T ss_dssp HHHHTCEEEEECTTSCHHHHHHHHHHTTCSEEEECC--CHHHHHHHHC----CCCE-EE---------------------
T ss_pred HHHhCcEEEecCCccChHHHHHHHhhcCCcEEEEecchhhhhhhhhcc----ccce-eE---------------------
Confidence 9999999999999999999999999999999999 666544441221 1121 22
Q ss_pred eHHHHHHccc----CCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCC--CCCcEEEEe
Q 010515 201 SWDEFLQLGE----NKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKL--TSEDVYVSY 274 (508)
Q Consensus 201 ~~~~l~~~~~----~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~--~~~~~~l~~ 274 (508)
.++++..... ..........++++++|+|||||||.||||.++|+++.+.+..+...+ ++ ..++++++.
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~~~~~l~~ 202 (504)
T 1t5h_X 128 FLGDLVRDGEPYSYGPPIEDPQREPAQPAFIFYTSGTTGLPKAAIIPQRAAESRVLFMSTQV-----GLRHGRHNVVLGL 202 (504)
T ss_dssp EGGGTEETTEECCCSCCCCCCCCCTTSEEEEEECCC---CCCEEEEEGGGHHHHHHHHHHTT-----CCCSSTTCEEEEC
T ss_pred EecchhhcCcccccCCccCCCCCCCCCeEEEEeCCCCCCCCCEEEecHHHHHHHHHHHHHhh-----CCCCCCCceEEee
Confidence 2222222110 111112345678999999999999999999999999998887754433 55 788999999
Q ss_pred cChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHH
Q 010515 275 LPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYS 352 (508)
Q Consensus 275 ~p~~~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~ 352 (508)
+|++|.+++.. .+.++..|+++++.+. ++..+++.|+++++|+++++|+++..+.+.......
T Consensus 203 ~p~~~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~--------------- 267 (504)
T 1t5h_X 203 MPLYHVVGFFAVLVAALALDGTYVVVEEFRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGS--------------- 267 (504)
T ss_dssp SCTTSHHHHTTTHHHHHHTTCEEEECSSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTC---------------
T ss_pred cchhhcchHHHHHHHHHHcCceEEeCCCCCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccc---------------
Confidence 99999999854 7778999999999876 999999999999999999999999998763210000
Q ss_pred hHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCC
Q 010515 353 YKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPN 432 (508)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~ 432 (508)
....+++|.+++||+++++++.+.+++.+++.+++.||+||++ ++....
T Consensus 268 ----------------------------~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~-~~~~~~-- 316 (504)
T 1t5h_X 268 ----------------------------SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM-NSLYMR-- 316 (504)
T ss_dssp ----------------------------CCCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETTTE-EEEEEE--
T ss_pred ----------------------------cccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccccc-cccccc--
Confidence 0011489999999999999999999999999999999999993 332222
Q ss_pred CcccCCcccccccCeeEEEeecCCC-cccCCCCCCCceEEEe-cCcccccccCChhhhhhhcccCceecCcccccc
Q 010515 433 EMSMIGTVGPPVPNVDVCLESVPEM-EYDALSSTPRGEVCVK-GSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 433 ~~~~~~s~G~p~~~~~v~Iv~~~~~-~~~~~~~~~~Gel~v~-g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
....+++|.|+++++++|+| +++ ...+++.|+.|||+|+ |++++.||+|+|+.|.+.|.||||+|||+|+++
T Consensus 317 -~~~~~~~g~p~~~~~~~i~~-~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~~~ 390 (504)
T 1t5h_X 317 -QPKTGTEMAPGFFSEVRIVR-IGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWT 390 (504)
T ss_dssp -SCSSSSEEBCCTTCCEEEEC-TTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEEC
T ss_pred -CCCCCccccCCCCCceeEEe-ccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEEEC
Confidence 12348899999999999999 555 2234455689999999 999999999999999999999999999999875
No 12
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=100.00 E-value=7.6e-58 Score=473.11 Aligned_cols=391 Identities=16% Similarity=0.189 Sum_probs=304.4
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHH
Q 010515 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (508)
Q Consensus 42 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (508)
+..||.++|+++++++||++|+++....++..+..+++||+||.++++++|+.|++.|+ +||+|+|+++|++++++++|
T Consensus 22 ~~~tl~~~l~~~a~~~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~g~-~gd~V~i~~~n~~e~~~~~l 100 (480)
T 3t5a_A 22 SVRSLPAALRACARLQPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRCGS-TGDRVVISAPQGLEYVVAFL 100 (480)
T ss_dssp --CCHHHHHHHHHHHSTTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTSSC-TTCEEEEECCSSHHHHHHHH
T ss_pred CcccHHHHHHHHHHhCCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhcCC-CCCEEEEEcCCcHHHHHHHH
Confidence 35799999999999999999999871101233445789999999999999999999996 99999999999999999999
Q ss_pred HHHhhCCeeeeccC---CCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCC-CccEEEEeCCCChhhHHHHhhcCc
Q 010515 122 ACNALGLHCVPLYD---TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTE-HLKTIVSFSKVKPEQREEIEKYGL 197 (508)
Q Consensus 122 A~~~~G~~~vpl~~---~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~-~l~~vi~~~~~~~~~~~~~~~~~~ 197 (508)
||+++|++++|+++ .++.+++..++++++++++|++......+......... ....++..+...
T Consensus 101 A~~~~G~v~vpl~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 168 (480)
T 3t5a_A 101 GALQAGRIAVPLSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQHVARRPGESPPSIIEVDLLD------------ 168 (480)
T ss_dssp HHHHTTCEEEEECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHHTCC------CCEEEEGGGSC------------
T ss_pred HHHHhCcEEEeeCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHHHHhccccccccceeEecccc------------
Confidence 99999999999999 78899999999999999999999988777665433211 111233222111
Q ss_pred EEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCC------CcEE
Q 010515 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTS------EDVY 271 (508)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~------~~~~ 271 (508)
.. ...........++++++|+|||||||.||||+++|+++.+.+......+ .+.. ++++
T Consensus 169 ---------~~-~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~~~~~~~d~~ 233 (480)
T 3t5a_A 169 ---------LD-APNGYTFKEDEYPSTAYLQYTSGSTRTPAGVVMSHQNVRVNFEQLMSGY-----FADTDGIPPPNSAL 233 (480)
T ss_dssp ---------TT-CC---CCCCSSCCSEEEEECC------CCCEEEEHHHHHHHHHHHHHHH-----CTTTTTCCCTTEEE
T ss_pred ---------cc-cccCCCCCCCCCCceEEEEecCCCCCCCcEEEEeHHHHHHHHHHHHHHh-----ccccccCCCCCCeE
Confidence 10 0111223345778999999999999999999999999999888766544 4444 8999
Q ss_pred EEecChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHH
Q 010515 272 VSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKT 345 (508)
Q Consensus 272 l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~ 345 (508)
++.+|++|.+++.. ++.+++.|+++++.+. ++..+++.|+++++| +.++|+++..++......
T Consensus 234 l~~~pl~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~---------- 302 (480)
T 3t5a_A 234 VSWLPFYHDMGLVIGICAPILGGYPAVLTSPVSFLQRPARWMHLMASDFHA-FSAAPNFAFELAARRTTD---------- 302 (480)
T ss_dssp EECCCTTSTTHHHHHTHHHHHHTCCEEECCHHHHHHCTHHHHHHTTSSSEE-EEEECHHHHHHHHHHCCT----------
T ss_pred EEeCCCcCccHHHHHHHHHHHcCCceEEECHHHHHHCHHHHHHHHHhhcee-EeeChHHHHHHHHhhcCc----------
Confidence 99999999999875 6778999999999862 899999999999999 889999888876521100
Q ss_pred HHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC------CceEeccCc
Q 010515 346 LFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC------AHVLQGYGL 419 (508)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~v~~~yG~ 419 (508)
+... ...+++||.+++||+++++++.+.+++.++ +.+++.||+
T Consensus 303 -----------------------~~~~--------~~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~~~~YG~ 351 (480)
T 3t5a_A 303 -----------------------DDMA--------GRDLGNILTILSGSERVQAATIKRFADRFARFNLQERVIRPSYWL 351 (480)
T ss_dssp -----------------------GGGT--------TCCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGEEEEEEE
T ss_pred -----------------------cccc--------ccchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhccccccc
Confidence 0001 111258999999999999999999999874 479999999
Q ss_pred ccCCcceeccCCCCc------------------------ccCCcccccccCeeEEEeecCC-CcccCCCCCCCceEEEec
Q 010515 420 TETCAGTFVSLPNEM------------------------SMIGTVGPPVPNVDVCLESVPE-MEYDALSSTPRGEVCVKG 474 (508)
Q Consensus 420 tE~~~~~~~~~~~~~------------------------~~~~s~G~p~~~~~v~Iv~~~~-~~~~~~~~~~~Gel~v~g 474 (508)
||++++++....... ...+++|+|++ ++++|+| ++ +.+++ .|+.|||+|+|
T Consensus 352 TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~-~~~~ivd-~~~g~~~~--~g~~GEl~v~g 427 (480)
T 3t5a_A 352 AEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRS-PIVRIVD-SDTCIECP--DGTVGEIWVHG 427 (480)
T ss_dssp TTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSS-SEEEEEE-TTTTEECC--TTBCEEEEEES
T ss_pred cccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccC-CEEEEEc-CCCCcCCC--CCCEEEEEEeC
Confidence 999988776654321 22358999999 9999999 55 55554 45899999999
Q ss_pred CcccccccCChhhhhhhc------------ccCceecCcccccc
Q 010515 475 STVFSGYYKREDLTKEVM------------VDGWFHTGCPHLFL 506 (508)
Q Consensus 475 ~~v~~gY~~~~~~~~~~f------------~~gw~~TGD~g~~~ 506 (508)
|+++.||||+|+.|.++| .+|||+|||+|++.
T Consensus 428 ~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d 471 (480)
T 3t5a_A 428 DNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT 471 (480)
T ss_dssp TTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE
T ss_pred CccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE
Confidence 999999999999999998 35699999999863
No 13
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=100.00 E-value=8.3e-57 Score=473.61 Aligned_cols=393 Identities=16% Similarity=0.152 Sum_probs=323.3
Q ss_pred CCCCCHHHHHHHHHHh-----CCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHc-CCCCCcEEEEEcCCch
Q 010515 41 PGMESCWDVFRMAVER-----NPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCP 114 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~-----~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~ 114 (508)
..++++.++|++++++ +||++|+++. +.. +..+++||+||.++++++|+.|++. |+++||+|+|+++|++
T Consensus 35 ~~~~~~~~~l~~~a~~~~a~~~p~~~al~~~---~~~-g~~~~~Ty~el~~~~~~lA~~L~~~~Gv~~gd~V~i~~~n~~ 110 (570)
T 3c5e_A 35 AKFNFASDVLDHWADMEKAGKRPPSPALWWV---NGK-GKELMWNFRELSENSQQAANVLSGACGLQRGDRVAVVLPRVP 110 (570)
T ss_dssp SBCCHHHHTHHHHHHHHHTTSSCCCEEEEEE---CSS-SCEEEEEHHHHHHHHHHHHHHHHTTTCCCTTCEEEEECCSCH
T ss_pred ccccHHHHHHHHHHhhccccCCCCceEEEEE---cCC-CceeEEeHHHHHHHHHHHHHHHHHccCCCCCCEEEEEcCCCH
Confidence 3456778999999999 9999999876 422 2237899999999999999999998 9999999999999999
Q ss_pred hHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhh
Q 010515 115 EWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEK 194 (508)
Q Consensus 115 ~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~ 194 (508)
++++++|||+++|++++|+++.++.+++.++++.++++++|++.+....+....... +.++.++.++....
T Consensus 111 e~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------- 181 (570)
T 3c5e_A 111 EWWLVILGCIRAGLIFMPGTIQMKSTDILYRLQMSKAKAIVAGDEVIQEVDTVASEC-PSLRIKLLVSEKSC-------- 181 (570)
T ss_dssp HHHHHHHHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEETTTHHHHHHHGGGC-TTCCEEEEESSSCC--------
T ss_pred HHHHHHHHHHHcCeEEEecCCCCCHHHHHHHHHhcCCeEEEechHHHHHHHHHhhcC-CceeEEEEecccCc--------
Confidence 999999999999999999999999999999999999999999998877665543322 55666666654211
Q ss_pred cCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHH--HHhhhhhhhhhcccCCCCCcEEE
Q 010515 195 YGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVT--FIAGVKCLLESVNEKLTSEDVYV 272 (508)
Q Consensus 195 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~--~~~~~~~~~~~~~~~~~~~~~~l 272 (508)
.....+++++..... ........++++++|+|||||||.||||.++|+ ++. ..... ...++.++|+++
T Consensus 182 --~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~-~~~~~~~~~~------~~~~~~~~d~~~ 251 (570)
T 3c5e_A 182 --DGWLNFKKLLNEAST-THHCVETGSQEASAIYFTSGTSGLPKMAEHSYS-SLGLKAKMDA------GWTGLQASDIMW 251 (570)
T ss_dssp --TTSEEHHHHHHHSCS-CCCCCCCBTTSEEEEEECCCSSSSCCEEEEEHH-HHHHHHHHHT------TTTSCCTTCEEE
T ss_pred --cccccHHHHhhcccc-cccccCCCCCCcEEEEECCCCCCCCCEEEechH-HHHhhhhhhh------hhcCCCCCceEE
Confidence 013456666654322 122234568999999999999999999999999 544 33321 234678899999
Q ss_pred EecChHHHHHHHH-HHHHHHcCCEEEEec---CCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHH
Q 010515 273 SYLPLAHIFDRAI-EEVFISNGAAIGFWR---GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFN 348 (508)
Q Consensus 273 ~~~p~~~~~g~~~-~~~~l~~G~~vv~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~ 348 (508)
+.+|++|.+++.. ++.++..|+++++.+ +++..+++.|+++++|+++++|++++.+.+..
T Consensus 252 ~~~p~~~~~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~---------------- 315 (570)
T 3c5e_A 252 TISDTGWILNILCSLMEPWALGACTFVHLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQD---------------- 315 (570)
T ss_dssp ECCCTTSHHHHHHTTHHHHHHTCEEEEECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSC----------------
T ss_pred EcCchHHHHHHHHHHHHHHHhCceEEEecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhcc----------------
Confidence 9999999999875 777899999999985 39999999999999999999999999886410
Q ss_pred HHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceec
Q 010515 349 IAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFV 428 (508)
Q Consensus 349 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~ 428 (508)
.. ....+++|.+++||+++++++.+.+++.+|+.+++.||+||++..++.
T Consensus 316 ----------------------~~--------~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~ 365 (570)
T 3c5e_A 316 ----------------------LS--------SYKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETGLTCMV 365 (570)
T ss_dssp ----------------------TT--------TCCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEEC
T ss_pred ----------------------cc--------ccccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcccceec
Confidence 00 001248999999999999999999999899999999999999877665
Q ss_pred cCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEe-----cCcccccccCChhhhhhhcccCceecCccc
Q 010515 429 SLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVK-----GSTVFSGYYKREDLTKEVMVDGWFHTGCPH 503 (508)
Q Consensus 429 ~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~-----g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g 503 (508)
.... ....+++|+|+++++++|+| ++++.++. |+.|||+|+ |++++.||||+|+.|.+.|.+|||+|||+|
T Consensus 366 ~~~~-~~~~~~vG~p~~~~~v~i~d-~~g~~~~~--G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDlg 441 (570)
T 3c5e_A 366 SKTM-KIKPGYMGTAASCYDVQIID-DKGNVLPP--GTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRG 441 (570)
T ss_dssp CTTS-CCCTTCCCEECTTCCEEEEC-TTSCBCCT--TCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEEE
T ss_pred Cccc-ccCCCcccccCCCceEEEEC-CCCCCCCC--CCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCccccceeE
Confidence 4432 23458999999999999999 87776655 589999999 999999999999999999999999999999
Q ss_pred ccc
Q 010515 504 LFL 506 (508)
Q Consensus 504 ~~~ 506 (508)
+++
T Consensus 442 ~~d 444 (570)
T 3c5e_A 442 IKD 444 (570)
T ss_dssp EEC
T ss_pred EEc
Confidence 875
No 14
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=100.00 E-value=2.5e-57 Score=478.32 Aligned_cols=373 Identities=17% Similarity=0.156 Sum_probs=305.9
Q ss_pred CCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHH
Q 010515 38 APIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI 117 (508)
Q Consensus 38 ~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~ 117 (508)
.......++.++|+++++++||++|+++. + +++||+||.++++++|+.|+++|+++||+|+|+++|+++++
T Consensus 69 ~~~~~~~~l~~~l~~~a~~~pd~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~ 139 (570)
T 4gr5_A 69 ERAPAGACVHELFEAQAARAPDAVALLHE----A-----DELTYGALNERANRLAHRLVGLGVAPGTLVGVHLERGFDMV 139 (570)
T ss_dssp -CCCCSCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHH
T ss_pred ccCCccCCHHHHHHHHHHHCCCCeEEECC----C-----CcEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHH
Confidence 34456789999999999999999999864 2 57999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCc
Q 010515 118 IGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (508)
Q Consensus 118 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~ 197 (508)
+++|||+++|++++|+++.++.+++.+++++++++++|++......+ .....++..+..
T Consensus 140 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~--------~~~~~~~~~~~~------------- 198 (570)
T 4gr5_A 140 VALLAVLKAGGGYTMLDPQFPVERLALSLEDTGAPLLVTSRPLSGRL--------TGTTTLYVEDEA------------- 198 (570)
T ss_dssp HHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTSS--------CSSEEEECCC---------------
T ss_pred HHHHHHHHHCCEEEEcCCCChHHHHHHHHHhcCCCEEEecchhhhcc--------cCCcceeeeccc-------------
Confidence 99999999999999999999999999999999999999997643321 122222211110
Q ss_pred EEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecCh
Q 010515 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (508)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 277 (508)
.. ............++++++|+|||||||.||||+++|+++.+.+.. .....+.+++++++.+|+
T Consensus 199 --------~~-~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~------~~~~~~~~~d~~l~~~p~ 263 (570)
T 4gr5_A 199 --------AS-DAPAGNLATGVGPEDVACVMFTSGSTGRPKGVMSPHRALTGTYLG------QDYAGFGPDEVFLQCSPV 263 (570)
T ss_dssp --------------CCCCCCCCCTTSEEEEECCSSCCSSCCCEEEEHHHHHHHHSS------CCSSCCSTTCEEEECSCT
T ss_pred --------cc-cccccccCCCCCCCCeEEEEECCcCCCCCeEEEEecHHHHHHHHh------hhhcCCCCCCEEEEecCc
Confidence 00 001111223457899999999999999999999999999876654 222367889999999999
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecC---CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhH
Q 010515 278 AHIFDRAIEEVFISNGAAIGFWRG---DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (508)
Q Consensus 278 ~~~~g~~~~~~~l~~G~~vv~~~~---~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (508)
+|..+...++.+++.|+++++.+. ++..+++.|+++++|++.++|+++..+.+....
T Consensus 264 ~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-------------------- 323 (570)
T 4gr5_A 264 SWDAFGLELFGALLFGARCVLQSGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPE-------------------- 323 (570)
T ss_dssp TSSTHHHHHHHHHTTTCEEEECSSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGG--------------------
T ss_pred cHHHHHHHHHHHHhcCCEEEEcCCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchh--------------------
Confidence 886666667788999999999863 899999999999999999999999998752111
Q ss_pred HhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCCC
Q 010515 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE 433 (508)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~ 433 (508)
..+++|.+++||++++.++.+.+.+.+ ++.+++.||+||++++++......
T Consensus 324 ----------------------------~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~ 375 (570)
T 4gr5_A 324 ----------------------------AFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAESMGFTTHHAVVA 375 (570)
T ss_dssp ----------------------------GGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCG
T ss_pred ----------------------------hCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhheeeeeeeeecc
Confidence 014799999999999999988888876 789999999999988766543322
Q ss_pred ---cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-cc--------CceecCc
Q 010515 434 ---MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VD--------GWFHTGC 501 (508)
Q Consensus 434 ---~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~--------gw~~TGD 501 (508)
.....++|+|+++++++|+| +++++++. |+.|||+|+||+++.||||+|+.|.++| .+ |||+|||
T Consensus 376 ~~~~~~~~~iG~p~~~~~v~i~d-~~~~~~~~--G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~~~w~~TGD 452 (570)
T 4gr5_A 376 GDLSGTALPIGVPLAGKRAYVLD-DDLKPAAN--GALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGGERMYRTGD 452 (570)
T ss_dssp GGTTSSSCCCBEECTTEEEEEEC-TTSCBCCT--TCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSCCEEEEEEE
T ss_pred cccCCCccccceeeCCCEEEEEC-CCCCCCCC--CCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCCCEEEeCCC
Confidence 22336799999999999999 88776655 5899999999999999999999999999 43 7999999
Q ss_pred ccccc
Q 010515 502 PHLFL 506 (508)
Q Consensus 502 ~g~~~ 506 (508)
+|+++
T Consensus 453 lg~~d 457 (570)
T 4gr5_A 453 LARRR 457 (570)
T ss_dssp EEEEC
T ss_pred eEEEC
Confidence 99975
No 15
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=100.00 E-value=1.9e-57 Score=472.02 Aligned_cols=381 Identities=22% Similarity=0.300 Sum_probs=305.6
Q ss_pred HHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhC
Q 010515 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALG 127 (508)
Q Consensus 48 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G 127 (508)
++|++.++++||++++... +..+ +++||+||.++++++|+.|+++|+++||+|+|+++|++++++++|||+++|
T Consensus 4 ~l~~~~a~~~p~~~a~~~~---~~~~---~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~~~~~~~~~~lA~~~~G 77 (503)
T 4fuq_A 4 NLFARLFDKLDDPHKLAIE---TAAG---DKISYAELVARAGRVANVLVARGLQVGDRVAAQTEKSVEALVLYLATVRAG 77 (503)
T ss_dssp CHHHHHHSCCSCTTSEEEE---ETTC---CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHhCCCCceEEEe---cCCC---cEEEHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 5788999999999999864 2211 579999999999999999999999999999999999999999999999999
Q ss_pred CeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHHHHHH
Q 010515 128 LHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQ 207 (508)
Q Consensus 128 ~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 207 (508)
++++|+++.++.+++.+++++++++++|++.+....+....... . ..++.++.... ..+.+...
T Consensus 78 a~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~-------------~~~~~~~~ 141 (503)
T 4fuq_A 78 GVYLPLNTAYTLHELDYFITDAEPKIVVCDPSKRDGIAAIAAKV-G--ATVETLGPDGR-------------GSLTDAAA 141 (503)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHCCSEEEECGGGTTTTHHHHHHH-T--CEEEECCTTSC-------------SHHHHHHH
T ss_pred cEEEecCCCCCHHHHHHHHHhcCCcEEEECchhhHHHHHHHhhc-C--ceEEEecCCcc-------------cccchhhh
Confidence 99999999999999999999999999999876543332221111 0 13333332211 01122111
Q ss_pred cccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHH-H
Q 010515 208 LGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-E 286 (508)
Q Consensus 208 ~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~ 286 (508)
.. ..........++++++|+|||||||.||||+++|+++.+.+..+...+ ++.++|++++.+|++|.+++.. .
T Consensus 142 ~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~~~~~p~~~~~g~~~~~ 215 (503)
T 4fuq_A 142 GA-SEAFATIDRGADDLAAILYTSGTTGRSKGAMLSHDNLASNSLTLVDYW-----RFTPDDVLIHALPIYHTHGLFVAS 215 (503)
T ss_dssp TS-CSCCCCCCCCTTSEEEEEECC--CCSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCSSSHCCCCCCH
T ss_pred cC-CCCcCcCCCCCCCeEEEEECCCcccCCeEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEeCChHHHHHHHHHH
Confidence 11 122223345789999999999999999999999999999988865544 7889999999999999988765 6
Q ss_pred HHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCC
Q 010515 287 EVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHV 365 (508)
Q Consensus 287 ~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 365 (508)
+.+++.|+++++.+. ++..+++.++ ++|+++++|+++..+.+...
T Consensus 216 ~~~l~~g~~~~~~~~~~~~~~~~~i~--~~t~~~~~P~~~~~l~~~~~-------------------------------- 261 (503)
T 4fuq_A 216 NVTLFARGSMIFLPKFDPDKILDLMA--RATVLMGVPTFYTRLLQSPR-------------------------------- 261 (503)
T ss_dssp HHHHHTTCEEEECSSCCHHHHHHHHT--TCCEEEECHHHHHHHHTCTT--------------------------------
T ss_pred HHHHHhCCEEEEcCCCCHHHHHHHHh--hcCEEEEHHHHHHHHHhCCC--------------------------------
Confidence 677999999998876 9999999998 89999999999998865210
Q ss_pred CcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCccccccc
Q 010515 366 EASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVP 445 (508)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~ 445 (508)
.... ..+++|.+++||+++++++.+.+++.+|+.+++.||+||++..+.... ......+++|+|++
T Consensus 262 -----~~~~--------~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~-~~~~~~~~~G~p~~ 327 (503)
T 4fuq_A 262 -----LTKE--------TTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETNMNTSNPY-DGDRVPGAVGPALP 327 (503)
T ss_dssp -----CSTT--------TTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTEECBCCCS-SSCCCTTEEEEBCT
T ss_pred -----cccc--------chhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccCcccccCC-CCCCcCCccccCCC
Confidence 0001 124899999999999999999999999999999999999987655333 23344589999999
Q ss_pred CeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010515 446 NVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 446 ~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
+++++|+|.++++.++ .|+.|||+|+||+++.||||+|+.|.+.| .+|||+|||+|++.
T Consensus 328 ~~~~~i~d~~~g~~~~--~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~~ 387 (503)
T 4fuq_A 328 GVSARVTDPETGKELP--RGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKID 387 (503)
T ss_dssp TCEEEEECTTTCCBCC--TTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEEC
T ss_pred CeEEEEEECCCCCCCc--CCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEEc
Confidence 9999999944555554 55899999999999999999999999999 69999999999984
No 16
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=100.00 E-value=5e-57 Score=472.28 Aligned_cols=392 Identities=17% Similarity=0.215 Sum_probs=310.9
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010515 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
..++++.++|+++++ +||++|+++. + +++||+||.++++++|+.|++.|+++||+|+|+++|++++++++
T Consensus 21 ~~~~~~~~~l~~~~~-~p~~~A~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~~~~~~~ 90 (529)
T 2v7b_A 21 ALFNFAAYLFRLNET-RAGKTAYIDD----T-----GSTTYGELEERARRFASALRTLGVHPEERILLVMLDTVALPVAF 90 (529)
T ss_dssp -CCCHHHHHHHHTGG-GTTSEEEECS----S-----CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSTHHHHHH
T ss_pred cceeHHHHHHHhhhc-cCCceEEEeC----C-----CCccHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCcHHHHHHH
Confidence 455679999999999 9999999853 2 47999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCc-cEEEEeCCCChhhHHHHhhcCcEE
Q 010515 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHL-KTIVSFSKVKPEQREEIEKYGLAV 199 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l-~~vi~~~~~~~~~~~~~~~~~~~~ 199 (508)
|||+++|++++|+++.++.+++.+++++++++++|++.+....+....... ..+ ..++..+..... ....
T Consensus 91 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--------~~~~ 161 (529)
T 2v7b_A 91 LGALYAGVVPVVANTLLTPADYVYMLTHSHARAVIASGALVQNVTQALESA-EHDGCQLIVSQPRESE--------PRLA 161 (529)
T ss_dssp HHHHHHTCEEEECCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHHHHHHCC----CCEEEEECC--------------CC
T ss_pred HHHHHcCceEEecCcccCHHHHHHHHhccCCeEEEechhhhhHHHHHHhhc-cccCceEEEecccccc--------cccc
Confidence 999999999999999999999999999999999999987765554432211 223 345444432110 0012
Q ss_pred eeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHH-HHHHhhhhhhhhhcccCCCCCcEEEEecChH
Q 010515 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENI-VTFIAGVKCLLESVNEKLTSEDVYVSYLPLA 278 (508)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~ 278 (508)
..++++..... .........++++++++|||||||.||||+++|+++ ....... ....++.++|++++.+|++
T Consensus 162 ~~~~~~~~~~~-~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~sh~~l~~~~~~~~-----~~~~~~~~~d~~~~~~p~~ 235 (529)
T 2v7b_A 162 PLFEELIDAAA-PAAKAAATGCDDIAFWLYSSGSTGKPKGTVHTHANLYWTAELYA-----KPILGIAENDVVFSAAKLF 235 (529)
T ss_dssp CBHHHHHHTSC-CCSSCCCCCTTSEEEEEEC-----CCCEEEEEHHHHHHHHHHTC-----CCCCCCCTTCEEEESSCTT
T ss_pred cchhhhhccCC-CcccccCCCCCCeEEEEECCCCCCCCceEEEEhhHHHHHHHHHh-----hhccCCCCCcEEEEeecHH
Confidence 24666665322 122233457899999999999999999999999999 5555442 2234678899999999999
Q ss_pred HHHHHHH-HHHHHHcCCEEEEec--CCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHH
Q 010515 279 HIFDRAI-EEVFISNGAAIGFWR--GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (508)
Q Consensus 279 ~~~g~~~-~~~~l~~G~~vv~~~--~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (508)
|.+++.. ++.++..|+++++.+ +++..+++.|+++++|+++++|+++..+.+....
T Consensus 236 ~~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------- 294 (529)
T 2v7b_A 236 FAYGLGNGLTFPLSVGATAILMAERPTADAIFARLVEHRPTVFYGVPTLYANMLVSPNL--------------------- 294 (529)
T ss_dssp SHHHHHHHTHHHHHHTCEEECCCSCCCHHHHHHHHHHSCCSEEEECHHHHHHHHTCTTC---------------------
T ss_pred HHHHHHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHhCCEEEEecHHHHHHHHhCccc---------------------
Confidence 9999876 566799999999873 3999999999999999999999999887641000
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcc
Q 010515 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (508)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~ 435 (508)
+.. ...++|.+++||+++++++.+.+++.+|+.+++.||+||++++++...... .
T Consensus 295 -------------~~~-----------~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~-~ 349 (529)
T 2v7b_A 295 -------------PAR-----------ADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEMLHIFLSNRAGA-V 349 (529)
T ss_dssp -------------CCG-----------GGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTSSEEEECCTTC-C
T ss_pred -------------ccc-----------cCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcCceeeccccCC-C
Confidence 000 002799999999999999999999999999999999999987766554443 3
Q ss_pred cCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010515 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 436 ~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
..+++|+|+++++++|+| ++++.++. |+.|||+|+||+++.|||++++.|.+.|.+|||+|||+|+++
T Consensus 350 ~~~~~G~p~~~~~~~i~d-~~g~~~~~--g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~ 417 (529)
T 2v7b_A 350 EYGTTGRPVPGYEIELRD-EAGHAVPD--GEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRL 417 (529)
T ss_dssp CTTSCCEECTTCEEEEEC-TTSCBCCT--TSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEEC
T ss_pred ccCCcccCCCCCEEEEEC-CCCCCCCC--CCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEEC
Confidence 348999999999999999 88776654 589999999999999999999999999999999999999875
No 17
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=100.00 E-value=7.5e-57 Score=481.07 Aligned_cols=405 Identities=14% Similarity=0.205 Sum_probs=323.8
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010515 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
.+++.++|+++++++||++|+++. +...+..+++||+||.++++++|+.|+++|+++||+|+|+++|++++++++||
T Consensus 75 ~n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~lTY~eL~~~v~~lA~~L~~~Gv~~Gd~V~i~~~~~~e~vva~lA 151 (652)
T 1pg4_A 75 LNLAANCLDRHLQENGDRTAIIWE---GDDTSQSKHISYRELHRDVCRFANTLLDLGIKKGDVVAIYMPMVPEAAVAMLA 151 (652)
T ss_dssp ECHHHHHTGGGHHHHTTSEEEEEE---CSSTTCEEEEEHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSSHHHHHHHHH
T ss_pred hhHHHHHHHHHhccCCCceEEEEE---cCCCCceeEEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHHH
Confidence 367889999999999999999975 33333447899999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCH---------HHHhhcCCCCC-CCccEEEEeCCCChhhHHHH
Q 010515 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI---------PEMLKTFPKTT-EHLKTIVSFSKVKPEQREEI 192 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~---------~~~~~~~~~~~-~~l~~vi~~~~~~~~~~~~~ 192 (508)
|+++|++++|+++.++.+++..++++++++++|+++... ..+.+...... ..++.+++++.......
T Consensus 152 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~--- 228 (652)
T 1pg4_A 152 CARIGAVHSVIFGGFSPEAVAGCIIDSSSRLVITADEGVRAGRSIPLKKNVDDALKNPNVTSVEHVIVLKRTGSDID--- 228 (652)
T ss_dssp HHHHTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESEEEETTEEEESHHHHHHHHTSTTCCSCCEEEEECSSCCCCC---
T ss_pred HHHcCcEEEecCCCCCHHHHHHHHHhcCCCEEEEcCccccCCcccchHHHHHHHHhcCCcCCCCEEEEEeCCCCccc---
Confidence 999999999999999999999999999999999987642 12222222111 24566777653221000
Q ss_pred hhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhh-hhhhhhhcccCCCCCcEE
Q 010515 193 EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG-VKCLLESVNEKLTSEDVY 271 (508)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~-~~~~~~~~~~~~~~~~~~ 271 (508)
........|++++..... ........++++++|+|||||||.||||+++|++++..... +... +++.++|++
T Consensus 229 -~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~~~~-----~~~~~~d~~ 301 (652)
T 1pg4_A 229 -WQEGRDLWWRDLIEKASP-EHQPEAMNAEDPLFILYTSGSTGKPKGVLHTTGGYLVYAATTFKYV-----FDYHPGDIY 301 (652)
T ss_dssp -CCBTTEEEHHHHHTTSCS-CCCCCCEETTSEEEEEEECCSSSSCEEEEEESHHHHHHHHHHHHHH-----TTCCTTCEE
T ss_pred -ccCCCceeHHHHHhhcCC-CCCccccCCCCCEEEEeccCCCCCCceEEECchHHHHHHHHHHHHh-----cCCCCCCEE
Confidence 000124568887764321 12233456799999999999999999999999998876643 2222 367889999
Q ss_pred EEecChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHH
Q 010515 272 VSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKT 345 (508)
Q Consensus 272 l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~ 345 (508)
++.+|++|..++.. ++.+++.|+++++.+. ++..+++.|+++++|+++++|++++.+.+.....
T Consensus 302 l~~~~~~~~~g~~~~~~~~L~~G~t~vl~~~~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~---------- 371 (652)
T 1pg4_A 302 WCTADVGWVTGHSYLLYGPLACGATTLMFEGVPNWPTPARMCQVVDKHQVNILYTAPTAIRALMAEGDKA---------- 371 (652)
T ss_dssp EECSCTTSHHHHHHTTHHHHHTTCEEEEECSCTTSSSTTHHHHHHHHHTCSEEEECHHHHHHHHTTGGGG----------
T ss_pred EEccCCeeeechHHHHHHHHHcCceEEEECCCCCCCCHHHHHHHHHHhCCeEEEeCHHHHHHHHhcCccc----------
Confidence 99999999999854 7788999999999863 7899999999999999999999999886521100
Q ss_pred HHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC---CceEeccCcccC
Q 010515 346 LFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTET 422 (508)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~tE~ 422 (508)
. .....++||.+++||+++++++.+++.+.+| +.+++.||+||+
T Consensus 372 -------------------------~--------~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~ 418 (652)
T 1pg4_A 372 -------------------------I--------EGTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTET 418 (652)
T ss_dssp -------------------------T--------TTCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCGGG
T ss_pred -------------------------c--------ccCCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEccccCccc
Confidence 0 0012258999999999999999999999888 899999999999
Q ss_pred CcceeccCCCC-cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEec--CcccccccCChhhhhhhc---ccCc
Q 010515 423 CAGTFVSLPNE-MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM---VDGW 496 (508)
Q Consensus 423 ~~~~~~~~~~~-~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g--~~v~~gY~~~~~~~~~~f---~~gw 496 (508)
++.++...+.. ....+++|+|++|++++|+| +++.+++. |+.|||+|+| |+++.||||+++.+.+.| .+||
T Consensus 419 ~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d-~~g~~v~~--g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g~ 495 (652)
T 1pg4_A 419 GGFMITPLPGAIELKAGSATRPFFGVQPALVD-NEGHPQEG--ATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNM 495 (652)
T ss_dssp SSCSBCCCTTTCCBCTTCCBSBCTTCCEEEEC-TTCCBCCS--SEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTS
T ss_pred ccceecCCCCCcCccCCccccCcCCCeEEEEC-CCCCCcCC--CceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCCE
Confidence 98776654432 33458999999999999999 88776654 4899999999 799999999999988877 3899
Q ss_pred eecCcccccc
Q 010515 497 FHTGCPHLFL 506 (508)
Q Consensus 497 ~~TGD~g~~~ 506 (508)
|+|||+|+++
T Consensus 496 y~TGDlg~~d 505 (652)
T 1pg4_A 496 YFSGDGARRD 505 (652)
T ss_dssp EEEEEEEEEC
T ss_pred EECCcEEEEc
Confidence 9999999975
No 18
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=100.00 E-value=1.2e-56 Score=479.68 Aligned_cols=406 Identities=17% Similarity=0.202 Sum_probs=324.0
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHH-HcCCCCCcEEEEEcCCchhHHHHHHH
Q 010515 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIR-TCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~-~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
+++.++|+++++++||++|+++. +...+..+++||+||.++++++|+.|+ ++|+++||+|+|+++|++++++++||
T Consensus 82 n~~~~~l~~~a~~~pd~~Al~~~---~~~~~~~~~~TY~eL~~~v~~lA~~L~~~~Gv~~Gd~V~i~~~~~~e~v~a~lA 158 (663)
T 1ry2_A 82 NACYNCVDRHALKTPNKKAIIFE---GDEPGQGYSITYKELLEEVCQVAQVLTYSMGVRKGDTVAVYMPMVPEAIITLLA 158 (663)
T ss_dssp CHHHHHTHHHHTTCTTSEEEEEE---CSSTTCCEEEEHHHHHHHHHHHHHHHHHTSCCCTTCEEEECCCSSHHHHHHHHH
T ss_pred cHHHHHHHHHhccCCCceEEEEE---cCCCCceEEEEHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHH
Confidence 68899999999999999999976 333334478999999999999999999 99999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHH---------HHhhcCCCCCCCccEEEEeCCCChhhHHHHh
Q 010515 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP---------EMLKTFPKTTEHLKTIVSFSKVKPEQREEIE 193 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~---------~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~ 193 (508)
|+++|++++|+++.++.+++..++++++|+++|+++.... .+.+..... +.++.+++++...... ..
T Consensus 159 ~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~vi~~~~~~~~~---~~ 234 (663)
T 1ry2_A 159 ISRIGAIHSVVFAGFSSNSLRDRINDGDSKVVITTDESNRGGKVIETKRIVDDALRET-PGVRHVLVYRKTNNPS---VA 234 (663)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEEESBCCBTTBCCBHHHHHHHHTTSC-TTCCEEEEECSSCCSS---CC
T ss_pred HHHcCCEEEeeCCCCCHHHHHHHHHhcCCeEEEEccccccCCcccchHHHHHHHHHhC-CCCceEEEEecCCCCc---cc
Confidence 9999999999999999999999999999999999876421 222333222 4567777765432100 00
Q ss_pred hcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEE
Q 010515 194 KYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVS 273 (508)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 273 (508)
........|+++..... ...+.....++++++|+|||||||.||||+++|++++....... ....++.++|++++
T Consensus 235 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d~a~ilyTSGTTG~PKgV~~sh~~~~~~~~~~~----~~~~~~~~~d~~~~ 309 (663)
T 1ry2_A 235 FHAPRDLDWATEKKKYK-TYYPCTPVDSEDPLFLLYTSGSTGAPKGVQHSTAGYLLGALLTM----RYTFDTHQEDVFFT 309 (663)
T ss_dssp CCSSSEEEHHHHHTTSC-SCCCCCCEETTSCCEEEEECCSSSSCEEEEECSHHHHHHHHHHH----HHHSCCCSSCEEEE
T ss_pred cCCCccccHHHHHhhcC-CCCCccccCCCCceEEEeccCCCCCCceEEEchhHHHHHHHHHH----HHhcCCCCCcEEEE
Confidence 00112456777765432 12233445789999999999999999999999999876654321 12236788999999
Q ss_pred ecChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHH
Q 010515 274 YLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLF 347 (508)
Q Consensus 274 ~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~ 347 (508)
..|++|..+... ++.+++.|+++++.+. ++..+++.|+++++|+++++|++++.+.+.....
T Consensus 310 ~~~~~~~~g~~~~~~~~L~~G~t~v~~~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~------------ 377 (663)
T 1ry2_A 310 AGDIGWITGHTYVVYGPLLYGCATLVFEGTPAYPNYSRYWDIIDEHKVTQFYVAPTALRLLKRAGDSY------------ 377 (663)
T ss_dssp CSCTTSHHHHHHTTHHHHHHTSEEEEECSCTTSSCTTHHHHHHHHTTCSEEEECHHHHHHHTTSCTTS------------
T ss_pred cCCcHHhhhhHHHHHHHHHhCCEEEEECCCCCCCCHHHHHHHHHHcCCCEEEecHHHHHHHHhcCccc------------
Confidence 999999999854 7788999999999863 7899999999999999999999998875410000
Q ss_pred HHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC---CceEeccCcccCCc
Q 010515 348 NIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC---AHVLQGYGLTETCA 424 (508)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~---~~v~~~yG~tE~~~ 424 (508)
.+ ...+++||.+++||+++++++.+++++.+| +++++.||+||+++
T Consensus 378 -----------------------~~--------~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~ 426 (663)
T 1ry2_A 378 -----------------------IE--------NHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGS 426 (663)
T ss_dssp -----------------------SS--------SCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCTTTCS
T ss_pred -----------------------cc--------cCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCccccC
Confidence 00 011258999999999999999999999887 89999999999997
Q ss_pred ceeccCC-C-CcccCCcccccccCeeEEEeecC-CCcccCCCCCCCceEEEec--CcccccccCChhhhhhhc-c--cCc
Q 010515 425 GTFVSLP-N-EMSMIGTVGPPVPNVDVCLESVP-EMEYDALSSTPRGEVCVKG--STVFSGYYKREDLTKEVM-V--DGW 496 (508)
Q Consensus 425 ~~~~~~~-~-~~~~~~s~G~p~~~~~v~Iv~~~-~~~~~~~~~~~~Gel~v~g--~~v~~gY~~~~~~~~~~f-~--~gw 496 (508)
.++...+ . ....++++|+|++|++++|+| + ++.+++. .|+.|||+|+| |+++.||||+++.+.+.| . +||
T Consensus 427 ~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d-~~~g~~v~~-~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~g~ 504 (663)
T 1ry2_A 427 HLVTPLAGGVTPMKPGSASFPFFGIDAVVLD-PNTGEELNT-SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGY 504 (663)
T ss_dssp CSEECCTTTCCCCCTTCCCEECTTCCEEEEC-SSSTTCEEC-SSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSSTTS
T ss_pred eeeccCCCCCcccCCCccccCcCCCeEEEEc-CCCCCcCCC-CCcceEEEEecCCCchhcccccChHHHHHhhhcCCCCE
Confidence 7666544 2 233458999999999999999 6 7766654 25899999999 589999999999998887 3 899
Q ss_pred eecCcccccc
Q 010515 497 FHTGCPHLFL 506 (508)
Q Consensus 497 ~~TGD~g~~~ 506 (508)
|+|||+|+++
T Consensus 505 y~TGDlg~~d 514 (663)
T 1ry2_A 505 YFTGDGAAKD 514 (663)
T ss_dssp EEEEEEEEEC
T ss_pred EEcCCEEEEc
Confidence 9999999985
No 19
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=100.00 E-value=1.4e-56 Score=500.59 Aligned_cols=423 Identities=23% Similarity=0.284 Sum_probs=332.0
Q ss_pred cCCCCCCCCceeecCccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHH
Q 010515 16 ASGGRPSIGPVYRSLFAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAI 95 (508)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L 95 (508)
..++.+..+.+|++..+.... +...|+.++|+++++++||++|+++. +.. +++||+||.++++++|+.|
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~----p~~~tl~~~l~~~a~~~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L 105 (979)
T 3tsy_A 37 KQSNNNNSDVIFRSKLPDIYI----PNHLSLHDYIFQNISEFATKPCLING---PTG----HVYTYSDVHVISRQIAANF 105 (979)
T ss_dssp --------CCCBCCSSCCCCC----CTTSCHHHHHTTTGGGTTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHH
T ss_pred hcccCCCCCceeecCCCCCCC----CCCCCHHHHHHHHHHhCCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHH
Confidence 334455667778777654333 34589999999999999999999865 322 6799999999999999999
Q ss_pred HHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCc
Q 010515 96 RTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHL 175 (508)
Q Consensus 96 ~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l 175 (508)
+++|+++||+|+|+++|++++++++|||+++|++++|++|.++.+++.+++++++++++|++......+....... .+
T Consensus 106 ~~~Gv~~gd~V~i~~~ns~e~~v~~lA~~~~Ga~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~--~~ 183 (979)
T 3tsy_A 106 HKLGVNQNDVVMLLLPNCPEFVLSFLAASFRGATATAANPFFTPAEIAKQAKASNTKLIITEARYVDKIKPLQNDD--GV 183 (979)
T ss_dssp HHTTCCTTCEEEEECSSCHHHHHHHHHHHHHTCEEEEECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSHHHHHTS--CC
T ss_pred HHcCCCCcCEEEEEeCCCHHHHHHHHHHHHcCCEEEeeCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHHHHhhcC--Cc
Confidence 9999999999999999999999999999999999999999999999999999999999999987665544332111 12
Q ss_pred cEEEEeCCCChhhHHHHhhcCcEEeeHHHHHHcccC--CCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhh
Q 010515 176 KTIVSFSKVKPEQREEIEKYGLAVYSWDEFLQLGEN--KQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAG 253 (508)
Q Consensus 176 ~~vi~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~ 253 (508)
.++.++..... ........++++...... ...+.....++++++|+|||||||.||||+++|+++.+.+..
T Consensus 184 -~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~ 256 (979)
T 3tsy_A 184 -VIVCIDDNESV------PIPEGCLRFTELTQSTTEASEVIDSVEISPDDVVALPYSSGTTGLPKGVMLTHKGLVTSVAQ 256 (979)
T ss_dssp -EEEECCCCTTS------CCCTTEEEGGGTSSCCSGGGGGSCCSCCCTTSEEECCBCCCSSSSCCBEEEEHHHHHHHHHH
T ss_pred -eEEEeCCcccc------cCCcccccHHHHhhccccccccCCcCCCCccceEEEEeCCCCCCCCeEEEechHHHHHHHHH
Confidence 34444432110 011234556665543322 122233457899999999999999999999999999988766
Q ss_pred hhhhhhhcccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHH
Q 010515 254 VKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSG 331 (508)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~ 331 (508)
..... .....+.++|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|++.++|+++..+.+.
T Consensus 257 ~~~~~-~~~~~~~~~d~~l~~~p~~h~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~ 335 (979)
T 3tsy_A 257 QVDGE-NPNLYFHSDDVILCVLPMFHIYALNSIMLCGLRVGAAILIMPKFEINLLLELIQRCKVTVAPMVPPIVLAIAKS 335 (979)
T ss_dssp HHCSS-SCSSCCCSSCEEEECSCSSSHHHHHHTHHHHHHHTCEEEECSSCCHHHHHHHHHHHTCCEEEECHHHHHHHHHC
T ss_pred HHHhh-cccccCCCCCEEEEECchHHHHHHHHHHHHHHhcCcEEEEeCCCCHHHHHHHHHHhCCeEEEcHHHHHHHHHhC
Confidence 43211 11235778999999999999999966 6777999999999876 999999999999999999999999988652
Q ss_pred HHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-C
Q 010515 332 LNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-C 410 (508)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~ 410 (508)
... ... ..+++|.+++||+++++++.+++++.+ +
T Consensus 336 ~~~-------------------------------------~~~--------~l~~lr~~~~gg~~l~~~~~~~~~~~~~~ 370 (979)
T 3tsy_A 336 SET-------------------------------------EKY--------DLSSIRVVKSGAAPLGKELEDAVNAKFPN 370 (979)
T ss_dssp GGG-------------------------------------GTS--------CCTTCCEEEESSCCCCSSHHHHHHHHCTT
T ss_pred ccc-------------------------------------cCC--------CccceEEEEEcCCCCCHHHHHHHHHHCCC
Confidence 111 111 124899999999999999999999988 8
Q ss_pred CceEeccCcccCCcceeccCC----CCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChh
Q 010515 411 AHVLQGYGLTETCAGTFVSLP----NEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKRED 486 (508)
Q Consensus 411 ~~v~~~yG~tE~~~~~~~~~~----~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~ 486 (508)
+.+++.||+||++++++.+.. ......+++|+|+++++++|+|.+++..++ .|+.|||+|+||+++.||||+|+
T Consensus 371 ~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~--~g~~GEl~i~g~~v~~GY~~~p~ 448 (979)
T 3tsy_A 371 AKLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLS--RNQPGEICIRGHQIMKGYLNNPA 448 (979)
T ss_dssp CEEEECEECGGGCSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCC--TTCCEEEEEESTTSCSEETTCHH
T ss_pred CeEEeeechhhhhHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCC--CCCccEEEEECCCccccccCChh
Confidence 999999999999987665421 112345889999999999999944455544 45899999999999999999999
Q ss_pred hhhhhc-ccCceecCcccccc
Q 010515 487 LTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 487 ~~~~~f-~~gw~~TGD~g~~~ 506 (508)
.|.+.| .+|||+|||+|++.
T Consensus 449 ~t~~~f~~~g~~~TGDl~~~~ 469 (979)
T 3tsy_A 449 ATAETIDKDGWLHTGDIGLID 469 (979)
T ss_dssp HHHHHBCTTSCEEEEEEEEEC
T ss_pred hhhhhccCCCcEEcCCEEEEc
Confidence 999999 79999999999975
No 20
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=100.00 E-value=2.2e-56 Score=465.19 Aligned_cols=372 Identities=18% Similarity=0.242 Sum_probs=310.5
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHc-CCCCCcEEEEEcCCchhHHHHHHH
Q 010515 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTC-GVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~-gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
+||.++|+++++++||++|+++. + +++||+||.++++++|+.|++. |.++||+|+++++|++++++++||
T Consensus 1 m~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~~~~~~~~g~~V~i~~~n~~~~~~~~lA 71 (511)
T 3e7w_A 1 MKLLHAIQTHAETYPQTDAFRSQ----G-----QSLTYQELWEQSDRAAAAIQKRISGEKKSPILVYGHMEPHMIVSFLG 71 (511)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHTTTSCSSSCCCEEEEESSCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCCeEEEcC----C-----ceeeHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEecCCHHHHHHHHH
Confidence 47999999999999999999864 2 6899999999999999999874 888999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeH
Q 010515 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~ 202 (508)
|+++|++++|+++.++.+++.++++.++++++|++....... .. .. .....+
T Consensus 72 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~---~~---~~----------------------~~~~~~ 123 (511)
T 3e7w_A 72 SVKAGHPYIPVDLSIPSERIAKIIESSGAELLIHAAGLSIDA---VG---QQ----------------------IQTVSA 123 (511)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTCCEEEESSSCCTTC---CC---CS----------------------SCEEEH
T ss_pred HHHhCCEEEecCCCChHHHHHHHHHhCCCCEEEecccccchh---cc---cc----------------------cceecH
Confidence 999999999999999999999999999999999976532111 00 00 124456
Q ss_pred HHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHH
Q 010515 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (508)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 282 (508)
+++...............++++++|+|||||||.||||+++|+++.+.+..+...+ .+..++++++.+|++|..+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 198 (511)
T 3e7w_A 124 EELLENEGGSVSQDQWVKEHETFYIIYTSGSTGNPKGVQISAANLQSFTDWICADF-----PVSGGKIFLNQAPFSFDLS 198 (511)
T ss_dssp HHHHTSCSCCCCGGGSCCTTSEEEEEEECCTTSSCEEEEEEHHHHHHHHHHHHHHS-----TTTTTCEEEECSCTTSTHH
T ss_pred hhhhccccCCccccccCCCCCeEEEEECCCCCCCCCEEEEcHHHHHHHHHHHHHhc-----CCCccceEEEeCCccHHHH
Confidence 66665443322233345778999999999999999999999999999988855544 7888999999999999999
Q ss_pred HHHHHHHHHcCCEEEEecC----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhh
Q 010515 283 RAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (508)
Q Consensus 283 ~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (508)
+...+.++..|+++++.+. ++..+++.++++++|+++++|+++..+++..
T Consensus 199 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~-------------------------- 252 (511)
T 3e7w_A 199 VMDLYPCLQSGGTLHCVTKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDP-------------------------- 252 (511)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTST--------------------------
T ss_pred HHHHHHHHhcCCEEEEcChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhcc--------------------------
Confidence 8778888999999999864 8999999999999999999999998876411
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCCC----
Q 010515 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE---- 433 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~---- 433 (508)
.... ...+++|.+++||+++++++.+.+++.+ ++.+++.||+||+++.++......
T Consensus 253 -----------~~~~--------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 313 (511)
T 3e7w_A 253 -----------GFSQ--------DLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEATVAVTSVEITNDVIS 313 (511)
T ss_dssp -----------TCST--------TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGGSSCSEEEEECHHHHT
T ss_pred -----------cccc--------ccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchheeeeeEEeccccccc
Confidence 0000 0124799999999999999999999988 899999999999988766543322
Q ss_pred cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc--ccC--ceecCccccc
Q 010515 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM--VDG--WFHTGCPHLF 505 (508)
Q Consensus 434 ~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f--~~g--w~~TGD~g~~ 505 (508)
.....++|+|+++++++|+| +++..++. |+.|||+|+||+++.||||+|+.|.+.| .+| ||+|||+|++
T Consensus 314 ~~~~~~~G~~~~~~~~~i~d-~~g~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~~TGDlg~~ 386 (511)
T 3e7w_A 314 RSESLPVGFAKPDMNIFIMD-EEGQPLPE--GEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFI 386 (511)
T ss_dssp TCSSCCCBEECTTCEEEEEC-TTSCBCCT--TCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEEEEEEEEEE
T ss_pred cCCcCCCcceeCCCEEEEEC-CCCCCCCC--CCceEEEEecCccChhhCCCcccchhhhcCCCCCEEEeCCCeEEc
Confidence 12236799999999999999 88776654 5899999999999999999999999999 345 8999999976
No 21
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=100.00 E-value=2.1e-56 Score=465.61 Aligned_cols=373 Identities=19% Similarity=0.200 Sum_probs=303.9
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHH
Q 010515 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (508)
+||.+.|+++++++||++|+++. + +++||+||.++++++|+.|++.|+++||+|+++++|++++++++|||
T Consensus 1 m~l~~~l~~~a~~~p~~~A~~~~---~------~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~e~~~~~la~ 71 (512)
T 3fce_A 1 MKLLEQIEKWAAETPDQTAFVWR---D------AKITYKQLKEDSDALAHWISSEYPDDRSPIMVYGHMQPEMIINFLGC 71 (512)
T ss_dssp CCHHHHHHHHHHHSTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHSTTCCCCEEEEESSCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHCCCceEEEeC---C------ceEEHHHHHHHHHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHH
Confidence 47999999999999999999864 2 57999999999999999999999999999999999999999999999
Q ss_pred HhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeHH
Q 010515 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSWD 203 (508)
Q Consensus 124 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~~ 203 (508)
+++|++++|+++.++.+++.++++.++++++|++....... ... .++... .+.
T Consensus 72 ~~~G~v~vpl~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~--------~~~-~~~~~~------------------~~~ 124 (512)
T 3fce_A 72 VKAGHAYIPVDLSIPADRVQRIAENSGAKLLLSATAVTVTD--------LPV-RIVSED------------------NLK 124 (512)
T ss_dssp HHTTCCEEEEETTSCHHHHHHHHHHSCCCEEEESSCCCSSC--------CSS-EEEETH------------------HHH
T ss_pred HHhCCEEEeeCCCCcHHHHHHHHHhcCCCEEEecCcccccc--------ccc-ceechh------------------hhh
Confidence 99999999999999999999999999999999985432100 001 111100 112
Q ss_pred HHHHcc-cCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHH
Q 010515 204 EFLQLG-ENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (508)
Q Consensus 204 ~l~~~~-~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 282 (508)
++.... ...........++++++|+|||||||.||||+++|+++.+.+......+ ++.++|++++.+|++|..+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~~ 199 (512)
T 3fce_A 125 DIFFTHKGNTPNPEHAVKGDENFYIIYTSGSTGNPKGVQITYNCLVSFTKWAVEDF-----NLQTGQVFLNQAPFSFDLS 199 (512)
T ss_dssp HHHHHTTTCCCCGGGSCCTTSEEEEEEECC----CEEEEEEHHHHHHHHHHHHHHT-----TCCSSCEEEECSCTTSGGG
T ss_pred hhcccccccCCCccccCCCCCeEEEEECCCCCCCCceEEEehHHHHHHHHHHHHhc-----CCCCCCEEEEeCCccHhHH
Confidence 222111 1112223345789999999999999999999999999999988855544 7889999999999999998
Q ss_pred HHHHHHHHHcCCEEEEecC----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhh
Q 010515 283 RAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (508)
Q Consensus 283 ~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (508)
+...+.+++.|+++++.+. ++..+++.++++++|++.++|+++..++....
T Consensus 200 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~------------------------- 254 (512)
T 3fce_A 200 VMDIYPSLVTGGTLWAIDKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEAS------------------------- 254 (512)
T ss_dssp HHHHHHHHHTTCEEEECCHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTT-------------------------
T ss_pred HHHHHHHHhCCCEEEECCHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhcc-------------------------
Confidence 8778888999999999874 89999999999999999999999988753110
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCCCc---
Q 010515 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNEM--- 434 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~~--- 434 (508)
... ...+++|.+++||+++++++.+.+.+.+ ++.+++.||+||+++.++.......
T Consensus 255 ------------~~~--------~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~ 314 (512)
T 3fce_A 255 ------------FSE--------SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLD 314 (512)
T ss_dssp ------------CST--------TTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEECCHHHHH
T ss_pred ------------ccc--------hhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChhhhheeeEEecccccc
Confidence 000 1124899999999999999999999988 7899999999999987765443221
Q ss_pred -ccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcc----cCceecCccccc
Q 010515 435 -SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV----DGWFHTGCPHLF 505 (508)
Q Consensus 435 -~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~----~gw~~TGD~g~~ 505 (508)
....++|+|+++++++|+| +++..++. |+.|||+|+||+++.|||++|+.|.+.|. +|||+|||+|++
T Consensus 315 ~~~~~~~G~~~~~~~~~i~d-~~g~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~ 387 (512)
T 3fce_A 315 QYKSLPVGYCKSDCRLLIMK-EDGTIAPD--GEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYV 387 (512)
T ss_dssp HCSSCCCEEECTTCEEEEEC-SSSCBCCT--TSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEE
T ss_pred ccCCCccccccCCcEEEEEC-CCCCCCCC--CCeEEEEEeccccChhhcCCchhhhhccccCCCCEEEeCCceEEe
Confidence 2347899999999999999 88776655 48999999999999999999999999982 569999999975
No 22
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=100.00 E-value=5.7e-56 Score=466.55 Aligned_cols=371 Identities=18% Similarity=0.251 Sum_probs=301.3
Q ss_pred CCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHH
Q 010515 40 IPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIG 119 (508)
Q Consensus 40 ~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~ 119 (508)
.+...++.++|+++++++||++|+++. + +++||+||.++++++|+.|++.|+++||+|+|+++|+++++++
T Consensus 35 ~~~~~~l~~~l~~~a~~~p~~~Al~~~----~-----~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~~n~~e~~~~ 105 (563)
T 1amu_A 35 YPRDKTIHQLFEEQVSKRPNNVAIVCE----N-----EQLTYHELNVKANQLARIFIEKGIGKDTLVGIMMEKSIDLFIG 105 (563)
T ss_dssp CCTTCCHHHHHHHHHHHCTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHCCCCeEEEeC----C-----ceecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHH
Confidence 344579999999999999999999863 2 5799999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEE
Q 010515 120 MEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV 199 (508)
Q Consensus 120 ~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~ 199 (508)
+|||+++|++++|+++.++.+++.+++++++++++|++......+..... ...+..+....
T Consensus 106 ~lA~~~~Gav~vpl~~~~~~~~l~~il~~~~~~~li~~~~~~~~~~~~~~-----~~~~~~~~~~~-------------- 166 (563)
T 1amu_A 106 ILAVLKAGGAYVPIDIEYPKERIQYILDDSQARMLLTQKHLVHLIHNIQF-----NGQVEIFEEDT-------------- 166 (563)
T ss_dssp HHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHTTSCC-----CSEEEECCCST--------------
T ss_pred HHHHHHhCCEEEEeCCCCcHHHHHHHHHhcCCCEEEEcCchhhhhhhccc-----cCceeeecchh--------------
Confidence 99999999999999999999999999999999999998876544433211 11233222110
Q ss_pred eeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHH
Q 010515 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (508)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 279 (508)
+ ... ..........++++++|+|||||||.||||+++|+++.+.+..+... .++.++|++++.+|++|
T Consensus 167 -----~-~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~-----~~~~~~d~~l~~~p~~~ 234 (563)
T 1amu_A 167 -----I-KIR-EGTNLHVPSKSTDLAYVIYTSGTTGNPKGTMLEHKGISNLKVFFENS-----LNVTEKDRIGQFASISF 234 (563)
T ss_dssp -----T-TTS-CCSCCCCCCCTTSEEEEEEEC-----CEEEEEESHHHHHHHHHHHHT-----SCCCTTCEEEECSCTTS
T ss_pred -----h-ccc-cCccCCCCCCCCCeEEEEECCCCCCCCcEEEEehHHHHHHHHHHHHh-----cCCCCCCEEEEeCCccH
Confidence 0 000 01111223467899999999999999999999999999888775443 37789999999999999
Q ss_pred HHHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHH
Q 010515 280 IFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (508)
Q Consensus 280 ~~g~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (508)
..++..++.+++.|+++++.+. ++..+++.|+++++|++.++|+++..+...
T Consensus 235 ~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~------------------------ 290 (563)
T 1amu_A 235 DASVWEMFMALLTGASLYIILKDTINDFVKFEQYINQKEITVITLPPTYVVHLDPE------------------------ 290 (563)
T ss_dssp THHHHHHHHHHTTTCEEEECCHHHHTCHHHHHHHHHHTTCCEEEECHHHHTTSCTT------------------------
T ss_pred HHHHHHHHHHHHCCCEEEEcChHhhcCHHHHHHHHHHcCCcEEEeCHHHHHHHHhc------------------------
Confidence 8888777888999999999863 889999999999999999999998765320
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC--
Q 010515 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-- 433 (508)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-- 433 (508)
..+++|.+++||+++++++.+.+++ .+.+++.||+||++++++......
T Consensus 291 ---------------------------~~~~lr~~~~gG~~l~~~~~~~~~~--~~~~~~~YG~TE~~~~~~~~~~~~~~ 341 (563)
T 1amu_A 291 ---------------------------RILSIQTLITAGSATSPSLVNKWKE--KVTYINAYGPTETTICATTWVATKET 341 (563)
T ss_dssp ---------------------------TCCSCSEEEEESSCCCHHHHHHHTT--TSEEEEEECCGGGSSCSEEEECCSSC
T ss_pred ---------------------------ccccccEEEEEEecCCHHHHHHHHh--CCeEEEEECcCHHhHhheeeeccccc
Confidence 0147999999999999999999887 478999999999987766543322
Q ss_pred cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcc-------cCceecCcccccc
Q 010515 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMV-------DGWFHTGCPHLFL 506 (508)
Q Consensus 434 ~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~-------~gw~~TGD~g~~~ 506 (508)
.....++|+|+++++++|+| +++..++. |+.|||+|+||+++.||||+|+.|.+.|. +|||+|||+|+++
T Consensus 342 ~~~~~~vG~p~~~~~v~i~d-~~~~~~~~--g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~TGDlg~~d 418 (563)
T 1amu_A 342 IGHSVPIGAPIQNTQIYIVD-ENLQLKSV--GEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKTGDQARWL 418 (563)
T ss_dssp CCSSCCCBEECTTEEEEEEC-TTSCBCCT--TCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEEEEEEEEC
T ss_pred CCCCCcccceeCCCEEEEEC-CCcCCCCC--CCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEecCCEEEEc
Confidence 22347899999999999999 87776655 58999999999999999999999999993 2599999999975
No 23
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=100.00 E-value=1.3e-55 Score=469.41 Aligned_cols=388 Identities=14% Similarity=0.165 Sum_probs=318.1
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHH
Q 010515 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (508)
Q Consensus 42 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (508)
...++.++|+++++ ||++|+++. + +++||+||.++++++|+.|++.|+++||+|+++++|++++++++|
T Consensus 25 ~~~~l~~~~~~~a~--pd~~Av~~~----~-----~~lTY~eL~~~a~~lA~~L~~~Gv~~gd~V~l~~~~s~~~vva~l 93 (617)
T 3rg2_A 25 QDLPLTDILTRHAA--SDSIAVIDG----E-----RQLSYRELNQAADNLACSLRRQGIKPGETALVQLGNVAELYITFF 93 (617)
T ss_dssp CCCCTTHHHHTTTT--CCSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHHH
T ss_pred CcCCHHHHHHHhhC--CCCeEEecC----C-----ceEeHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCCcHHHHHHHH
Confidence 34789999999987 999999864 2 679999999999999999999999999999999999999999999
Q ss_pred HHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCH-----HHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcC
Q 010515 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKI-----PEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYG 196 (508)
Q Consensus 122 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~-----~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~ 196 (508)
||+++|++++|+++..+.+++..+++.+++++++++.... ........ ....++.+........
T Consensus 94 A~l~aG~~~vpl~~~~~~~~l~~~l~~~~~~~vl~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~---------- 162 (617)
T 3rg2_A 94 ALLKLGVAPVLALFSHQRSELNAYASQIEPALLIADRQHALFSGDDFLNTFVT-EHSSIRVVQLLNDSGE---------- 162 (617)
T ss_dssp HHHHHTCEEEEECTTCCHHHHHHHHHHHCCSEEEEETTSGGGSSSHHHHHHHH-HSTTCCEEEEETCCST----------
T ss_pred HHHhcCeEEccCCccccHHHHHHHHhhcCceEEEecccccccccHHHHHHHhh-cCCccceeeecccccc----------
Confidence 9999999999999999999999999999999999998754 11111111 1144455555444321
Q ss_pred cEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecC
Q 010515 197 LAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLP 276 (508)
Q Consensus 197 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p 276 (508)
..+.+...... .........+++++||+|||||||.||||+++|+++.+.+......+ ++.+++++++.+|
T Consensus 163 ---~~~~~~~~~~~-~~~~~~~~~~~~~a~ii~TSGSTG~PKgV~~th~~~~~~~~~~~~~~-----~~~~~~~~l~~~p 233 (617)
T 3rg2_A 163 ---HNLQDAINHPA-EDFTATPSPADEVAYFQLSGGTTGTPKLIPRTHNDYYYSVRRSVEIC-----QFTQQTRYLCAIP 233 (617)
T ss_dssp ---TBHHHHHHSCC-SSCCCCCCCTTSEEEEEECCCSSSSCCEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECSC
T ss_pred ---cchhhhhcccc-cccCCCCCCCCCeEEEEECCCcCCCCCEeehhHHHHHHHHHHHHHhc-----CCCCcceEEEecc
Confidence 12334333322 12223445679999999999999999999999999999998866555 7889999999999
Q ss_pred hHHHHHHHH--HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHh
Q 010515 277 LAHIFDRAI--EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSY 353 (508)
Q Consensus 277 ~~~~~g~~~--~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (508)
++|.+++.. .+.+++.|+++++.+. ++..+++.|+++++|++.++|+++..+.+........
T Consensus 234 ~~~~~~~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~--------------- 298 (617)
T 3rg2_A 234 AAHNYAMSSPGSLGVFLAGGTVVLAADPSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESR--------------- 298 (617)
T ss_dssp TTSHHHHHSSHHHHHHHHTCEEEECSSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCT---------------
T ss_pred chhhhhhhHHHHHHHHHcCCEEEEeCCCCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhccccc---------------
Confidence 999999875 7778999999999876 8999999999999999999999999987643321110
Q ss_pred HHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC
Q 010515 354 KFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE 433 (508)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~ 433 (508)
...+++|.+++||+++++++.+.+.+.+++.+++.||+||++..++......
T Consensus 299 ----------------------------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~ 350 (617)
T 3rg2_A 299 ----------------------------AQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGLVNYTRLDDSA 350 (617)
T ss_dssp ----------------------------TTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEEEEECCTTSCH
T ss_pred ----------------------------ccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcceeecccCCCcc
Confidence 0114899999999999999999999999999999999999986555443332
Q ss_pred cccCCcccccc-cCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010515 434 MSMIGTVGPPV-PNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 434 ~~~~~s~G~p~-~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
.....++|+|+ ++++++|+| ++++.+|.| +.|||+|+||+++.||||+|+.|.+.| .+|||+|||+|++.
T Consensus 351 ~~~~~~~G~p~~~~~~~~i~d-~~~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~~~ 422 (617)
T 3rg2_A 351 EKIIHTQGYPMCPDDEVWVAD-AEGNPLPQG--EVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISID 422 (617)
T ss_dssp HHHHHCCCEESCTTCEEEEEC-TTSCBCCTT--CCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEEEC
T ss_pred cccccCCCccCCCCceEEEEC-CCCCCCCCC--CceEEEecCccccchhcCChhhhhhccCCCCceecCceEEEc
Confidence 22336789997 788999999 887766554 899999999999999999999999999 89999999999985
No 24
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=100.00 E-value=8.3e-56 Score=469.35 Aligned_cols=369 Identities=16% Similarity=0.132 Sum_probs=302.5
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010515 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
....|+.++|+++++++||++|+++. + +++||+||.++++++|+.|++.|+++||+|+|+++|++++++++
T Consensus 24 ~~~~tl~~~~~~~a~~~Pd~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vva~ 94 (620)
T 4dg8_A 24 YAHPTVVARFSEMAALHPHREAIRDR---F------GSVDYRQLLDSAEQLSDYLLEHYPQPGVCLGVYGEYSRESITCL 94 (620)
T ss_dssp GGSCCHHHHHHHHHHHCTTSEEEEET---T------EEEEHHHHHHHHHHHHHHHHHHCCSSCCEEEEESSSCHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCCeEEEcC---C------CcCcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHH
Confidence 45679999999999999999999864 2 57999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEe
Q 010515 121 EACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVY 200 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~ 200 (508)
|||+++|++++|+++.++.+++..+++++++++++++....... ..+..+
T Consensus 95 lailkaGa~~vpld~~~p~~~l~~il~~~~~~~vl~~~~~~~~~--------~~~~~~---------------------- 144 (620)
T 4dg8_A 95 LAILLSGHHYLYIDLKQPAAWNAELCRQVDCRLILDCSTTPTPA--------NGLPCV---------------------- 144 (620)
T ss_dssp HHHHHTTCEEEECCTTSCHHHHHHHHHHHTEEEEEECCSSCCCC--------TTSCEE----------------------
T ss_pred HHHHHhCCEEEeeCccChHHHHHHHHHhCCCcEEEecCcccccc--------cCCcee----------------------
Confidence 99999999999999999999999999999999999765432211 111111
Q ss_pred eHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHH
Q 010515 201 SWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHI 280 (508)
Q Consensus 201 ~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~ 280 (508)
.+.... ........+...+++++||+|||||||.||||+++|+++.+.+.. .. ...+.++++++..+|++|.
T Consensus 145 ~~~~~~--~~~~~~~~~~~~~~d~a~iiyTSGSTG~PKgV~~th~~l~~~~~~-~~-----~~~~~~~d~~l~~~p~~~~ 216 (620)
T 4dg8_A 145 PVRHLP--AAPASVARPCFAADQIAYINFSSGTTGRPKAIACTHAGITRLCLG-QS-----FLAFAPQMRFLVNSPLSFD 216 (620)
T ss_dssp EGGGCC--CCCCCSSCCCCCTTSEEEEEEEBSSSSSCEEEEEEHHHHHHHHSS-CG-----GGTTCTTCEEEECSCTTST
T ss_pred eeccCC--cCCccccCCCCCCCCeEEEEECCCccccCeEEEEchHHHHHHHHH-HH-----hhCCCCCCEEEEECccCHH
Confidence 011000 001112223446899999999999999999999999999887654 22 2367889999999999999
Q ss_pred HHHHHHHHHHHcCCEEEEec---CCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhh
Q 010515 281 FDRAIEEVFISNGAAIGFWR---GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (508)
Q Consensus 281 ~g~~~~~~~l~~G~~vv~~~---~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (508)
.++...+.+++.|+++++.+ .++..+++.|+++++|+++++|+++..+.+...
T Consensus 217 ~~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~------------------------ 272 (620)
T 4dg8_A 217 AATLEIWGALLNGGCCVLNDLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDP------------------------ 272 (620)
T ss_dssp HHHHHHHHHHTTTCEEEECCSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCG------------------------
T ss_pred HHHHHHHHHHhcCCEEEeCccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcCh------------------------
Confidence 99888888999999999975 289999999999999999999999998764200
Q ss_pred hhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCCC---
Q 010515 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE--- 433 (508)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~--- 433 (508)
...+++|.+++||+++++++.+.+.+.+ ++.++|.||+||++++++......
T Consensus 273 ------------------------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~ 328 (620)
T 4dg8_A 273 ------------------------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTENTTFTCCHVVTDDDL 328 (620)
T ss_dssp ------------------------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGGCSCSEEEECCTGGG
T ss_pred ------------------------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhhhhheEEEecccccc
Confidence 0114799999999999988877776655 789999999999998765443222
Q ss_pred cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhccc--------CceecCccccc
Q 010515 434 MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVD--------GWFHTGCPHLF 505 (508)
Q Consensus 434 ~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~--------gw~~TGD~g~~ 505 (508)
.....++|+|+++++++|+| +++... ++.|+.|||+|+|++++.||||+|+.|.+.|.+ +||+|||+|++
T Consensus 329 ~~~~~~iG~p~~~~~~~i~d-~~~~~~-~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~~~~yrTGDl~~~ 406 (620)
T 4dg8_A 329 EEDDIPIGKAIAGTAVLLLD-EHGQEI-AEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRLLRAYRTGDRARY 406 (620)
T ss_dssp GSSSCCCBEECTTEEEEEEC-TTSCBC-CSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEEEEEEEEEEEEEE
T ss_pred CCCCCCceecccCcEEEEEC-ccCCCC-CCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCCceEEeCCCEEEE
Confidence 22347899999999999999 777652 235689999999999999999999999999932 79999999997
Q ss_pred c
Q 010515 506 L 506 (508)
Q Consensus 506 ~ 506 (508)
.
T Consensus 407 ~ 407 (620)
T 4dg8_A 407 D 407 (620)
T ss_dssp C
T ss_pred C
Confidence 5
No 25
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=100.00 E-value=7.2e-56 Score=462.74 Aligned_cols=375 Identities=18% Similarity=0.163 Sum_probs=306.1
Q ss_pred CCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHH
Q 010515 42 GMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGME 121 (508)
Q Consensus 42 ~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~l 121 (508)
.++|+.+.|+++++++||++|+.+. + +++||+||.++++++|+.|++.|+++||+|+++++|++++++++|
T Consensus 2 ~~~~l~~~l~~~a~~~p~~~a~~~~----~-----~~~Ty~el~~~~~~lA~~L~~~g~~~gd~V~i~~~n~~~~~~~~l 72 (521)
T 3l8c_A 2 SLKDMIDSIEQFAQTQADFPVYDCL----G-----ERRTYGQLKRDSDSIAAFIDSLALLAKSPVLVFGAQTYDMLATFV 72 (521)
T ss_dssp CCCCHHHHHHHHHHHSTTSEEEEET----T-----EEEEHHHHHHHHHHHHHHHHHTCCCTTCCEEEEECSSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHCCCCcceecC----C-----CeecHHHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCCHHHHHHHH
Confidence 3578999999999999999999764 2 579999999999999999999999999999999999999999999
Q ss_pred HHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEee
Q 010515 122 ACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYS 201 (508)
Q Consensus 122 A~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~ 201 (508)
||+++|++++|+++.++.+++.++++.++++++|++.+....+ ... ....
T Consensus 73 A~~~~G~v~vpl~~~~~~~~l~~il~~~~~~~ii~~~~~~~~~--------~~~----------------------~~~~ 122 (521)
T 3l8c_A 73 ALTKSGHAYIPVDVHSAPERILAIIEIAKPSLIIAIEEFPLTI--------EGI----------------------SLVS 122 (521)
T ss_dssp HHHHTTCCEEEEETTSCHHHHHHHHHHSCCSEEEESSCCCSCC--------TTS----------------------EEEE
T ss_pred HHHHhCCEEEecCccccHHHHHHHHHhCCCCEEEecCcccccc--------ccC----------------------cccc
Confidence 9999999999999999999999999999999999987643211 111 1233
Q ss_pred HHHHHHcc--cCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHH
Q 010515 202 WDEFLQLG--ENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAH 279 (508)
Q Consensus 202 ~~~l~~~~--~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~ 279 (508)
++++.... ...........++++++|+|||||||.||||+++|+++.+.+..+... ........++++...|++|
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~ 199 (521)
T 3l8c_A 123 LSEIESAKLAEMPYERTHSVKGDDNYYIIFTSGTTGQPKGVQISHDNLLSFTNWMIED---AAFDVPKQPQMLAQPPYSF 199 (521)
T ss_dssp HHHHHHHHHHTCCCCCSSCCCTTSEEEEEECCC---CCCEEEEEHHHHHHHHHHHHHC---TTTCCCSSCEEECCSCTTS
T ss_pred hhhhhhcccccCCcccCCCCCCCCcEEEEEcCCCCCCCCEEEEehHHHHHHHHHHhhc---cccCCCCCCeEEecCCccH
Confidence 33333211 111222334578999999999999999999999999999877764332 1236778899999999999
Q ss_pred HHHHHHHHHHHHcCCEEEEecC----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHH
Q 010515 280 IFDRAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (508)
Q Consensus 280 ~~g~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (508)
..++..++.++..|+++++.+. ++..+++.+.+++++++.++|+++..+.....
T Consensus 200 ~~~~~~~~~~l~~G~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~---------------------- 257 (521)
T 3l8c_A 200 DLSVMYWAPTLALGGTLFALPKELVADFKQLFTTIAQLPVGIWTSTPSFADMAMLSDD---------------------- 257 (521)
T ss_dssp GGGHHHHHHHHHTTCEEEECCGGGTTCHHHHHHHHHHSCCSEEEECHHHHHHHHTSTT----------------------
T ss_pred HHHHHHHHHHHhcCCEEEEcCHHHhhCHHHHHHHHHHcCCcEEEeCCCHHHHHhhhhc----------------------
Confidence 8887778888999999999864 88999999999999999999999987654110
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh-CCceEeccCcccCCcceeccCCCC-
Q 010515 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA-CAHVLQGYGLTETCAGTFVSLPNE- 433 (508)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~-~~~v~~~yG~tE~~~~~~~~~~~~- 433 (508)
... ...+++|.+++||+++++++.+.+.+.+ ++.+++.||+||+++.++......
T Consensus 258 ---------------~~~--------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~ 314 (521)
T 3l8c_A 258 ---------------FCQ--------AKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEATVALSAIEITRE 314 (521)
T ss_dssp ---------------CST--------TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGGSSCSEEEEECHH
T ss_pred ---------------ccc--------ccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHHhhhhceeecccc
Confidence 000 0114799999999999999999999888 899999999999988766543322
Q ss_pred ---cccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc----ccCceecCcccccc
Q 010515 434 ---MSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM----VDGWFHTGCPHLFL 506 (508)
Q Consensus 434 ---~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f----~~gw~~TGD~g~~~ 506 (508)
....+++|+|+++++++|+| +++.+++. |+.|||+|+||+++.||||+|+.|.+.| .+|||+|||+|+++
T Consensus 315 ~~~~~~~~~vG~p~~~~~~~i~d-~~g~~~~~--g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~TGDlg~~d 391 (521)
T 3l8c_A 315 MVDNYTRLPIGYPKPDSPTYIID-EDGKELSS--GEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAYHTGDIGSLT 391 (521)
T ss_dssp HHHHCSSCEEEEECTTSCEEEEC-TTSCBCCT--TCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEEEEEEEEEEC
T ss_pred cccCCCccccccccCCCEEEEEC-CCcCCCCC--CCceEEEecccccChhhcCCchHhhccCcCCCCceeeeCCCEEEEe
Confidence 12346899999999999999 88776655 4899999999999999999999999998 35799999999975
No 26
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=100.00 E-value=2.2e-55 Score=465.01 Aligned_cols=396 Identities=17% Similarity=0.231 Sum_probs=316.0
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEc
Q 010515 31 FAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYG 110 (508)
Q Consensus 31 ~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~ 110 (508)
.....++...+.+.||.++|+++++++|+.+++.+ ..+..+++||+||.++++++|+.|+++|+++||+|+|++
T Consensus 8 ~~~~~~~~~~~~~~tl~~~l~~~a~~~p~~~~~~~------~~~~~~~~Ty~eL~~~~~~lA~~L~~~Gv~~gd~V~i~~ 81 (576)
T 3gqw_A 8 IFTHSLPMRYADFPTLVDALDYAALSSAGMNFYDR------RCQLEDQLEYQTLKARAEAGAKRLLSLNLKKGDRVALIA 81 (576)
T ss_dssp ------CCCCSCCSSHHHHHHHHTTSSCEEEEECT------TSCEEEEEEHHHHHHHHHHHHHHHHHTCCCTTCEEEEEC
T ss_pred hhcCCCCcccCCCCcHHHHHHHHhhCCCCeEEeCC------CCCceeEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEc
Confidence 44567778888999999999999999999777643 222237899999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHhhCCeeeeccCCCC-------hHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCC
Q 010515 111 VNCPEWIIGMEACNALGLHCVPLYDTLG-------AGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSK 183 (508)
Q Consensus 111 ~n~~~~~~~~lA~~~~G~~~vpl~~~~~-------~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~ 183 (508)
+|++++++++|||+++|++++|+++.++ .+++..+++.++++++|++.+....+....... +.+.
T Consensus 82 ~~~~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~l~~~~~~~ii~~~~~~~~~~~~~~~~-~~~~------- 153 (576)
T 3gqw_A 82 ETSSEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQGLLASCQPAAIITGDEWLPLVNAATHDN-PELH------- 153 (576)
T ss_dssp CSSHHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHHHHHHHCCSEEEECGGGHHHHHHHGGGC-TTCE-------
T ss_pred CCcHHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHHHHHhcCCCEEEecHHHHHHHHHhhccC-Ccce-------
Confidence 9999999999999999999999999999 789999999999999999988766554433211 1111
Q ss_pred CChhhHHHHhhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhccc
Q 010515 184 VKPEQREEIEKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNE 263 (508)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~ 263 (508)
...... ...............++++++|+|||||||.||||+++|+++.+.+..+... ..
T Consensus 154 ---------------~~~~~~-~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~~~~~~~~~~~~----~~ 213 (576)
T 3gqw_A 154 ---------------VLSHAW-FKALPEADVALQRPVPNDIAYLQYTSGSTRFPRGVIITHREVMANLRAISHD----GI 213 (576)
T ss_dssp ---------------EEEHHH-HHTSCCCCCCCCCCCTTSEEEEECTTSCSSSCCCEEEEHHHHHHHHHHHHHT----TS
T ss_pred ---------------ecchhh-hhcccccccccCCCCCCCeEEEEeCCCCCCCCceEEeeHHHHHHHHHHhhhc----cc
Confidence 111111 1111122223334568999999999999999999999999999888764322 24
Q ss_pred CCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhh
Q 010515 264 KLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKIS 337 (508)
Q Consensus 264 ~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~ 337 (508)
.+.++|++++.+|++|.+++.. ++.++..|+++++.+. ++..+++.|+++++|+++++|.++..+.+.+...
T Consensus 214 ~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~-- 291 (576)
T 3gqw_A 214 KLRPGDRCVSWLPFYHDMGLVGFLLTPVATQLSVDYLRTQDFAMRPLQWLKLISKNRGTVSVAPPFGYELCQRRVNEK-- 291 (576)
T ss_dssp CCCTTCCEEECCCTTSHHHHHHHTHHHHHTTCCEEECCHHHHHHCTTHHHHHHHHTTCCEEEECHHHHHHHHHSCCHH--
T ss_pred CCCCcceEEEcCCccccccHHHHHHHHHhcCceEEEcchhHhhhCHHHHHHHHHHhCCeEEEcCHHHHHHHHHHhccc--
Confidence 6889999999999999999876 5566999999988763 8899999999999999999999998775421111
Q ss_pred ccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHh------CC
Q 010515 338 SGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVA------CA 411 (508)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~------~~ 411 (508)
.......+++|.+++||+++++++.+.+.+.+ ++
T Consensus 292 ----------------------------------------~~~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~ 331 (576)
T 3gqw_A 292 ----------------------------------------DLAELDLSCWRVAGIGAEPISAEQLHQFAECFRQVNFDNK 331 (576)
T ss_dssp ----------------------------------------HHTTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGG
T ss_pred ----------------------------------------ccccCChhhhHhhhccCccCCHHHHHHHHHHHhhcCCCcc
Confidence 00111235899999999999999999999887 67
Q ss_pred ceEeccCcccCCcceeccCCCCc---------------------------ccCCcccccccCeeEEEeecCCCcccCCCC
Q 010515 412 HVLQGYGLTETCAGTFVSLPNEM---------------------------SMIGTVGPPVPNVDVCLESVPEMEYDALSS 464 (508)
Q Consensus 412 ~v~~~yG~tE~~~~~~~~~~~~~---------------------------~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~ 464 (508)
.+++.||+||++++++....... ....++|+|+++++++|+| +++..++.
T Consensus 332 ~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d-~~g~~~~~-- 408 (576)
T 3gqw_A 332 TFMPCYGLAENALAVSFSDEASGVVVNEVDRDILEYQGKAVAPGAETRAVSTFVNCGKALPEHGIEIRN-EAGMPVAE-- 408 (576)
T ss_dssp GEEEEEECGGGSSEEEECCTTCCCCEEEEEHHHHHHHCBCCCCCTTCCCEEEEEBCCEECTTCEEEEEC-TTSCBCCT--
T ss_pred cccccCCcccccceeecccccCCccccccchhhhcccCcccccCccccCccceeecCCcCCCCeEEEEC-CCCCCCCC--
Confidence 89999999999988776543210 0113799999999999999 88876655
Q ss_pred CCCceEEEecCcccccccCChhhhhhhcccCceecCccccc
Q 010515 465 TPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLF 505 (508)
Q Consensus 465 ~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~ 505 (508)
|+.|||+|+||+++.||||+++.+.+.+.+|||+|||+|++
T Consensus 409 g~~GEl~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGDl~~~ 449 (576)
T 3gqw_A 409 RVVGHICISGPSLMSGYFGDQVSQDEIAATGWLDTGDLGYL 449 (576)
T ss_dssp TBCEEEEEESTTSCCCBTTCHHHHHHHHHHSCEEEEEEEEE
T ss_pred CCeEEEEEeCccccccccCCccccccccCCCeeeccceEEE
Confidence 48999999999999999999999988889999999999975
No 27
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=100.00 E-value=2.1e-55 Score=466.32 Aligned_cols=389 Identities=19% Similarity=0.202 Sum_probs=309.0
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHH
Q 010515 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGM 120 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~ 120 (508)
....|+.++|+++++++||++|+++. +. +..+++||+||.++++++|+.|++.|+++||+|+|+++|++++++++
T Consensus 8 ~~~~tl~~~l~~~a~~~p~~~a~~~~---~~--~~~~~~Ty~eL~~~~~~lA~~L~~~gv~~gd~V~i~~~~~~~~~~~~ 82 (590)
T 3kxw_A 8 LQCQSLVDVVRLRALHSPNKKSCTFL---NK--ELEETMTYEQLDQHAKAIAATLQAEGAKPGDRVLLLFAPGLPLIQAF 82 (590)
T ss_dssp HTCSSHHHHHHHHHHHCTTSEEEEEE---ET--TEEEEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEEECCSSHHHHHHH
T ss_pred cCcccHHHHHHHHHHhCCCCeEEEEE---cC--CeeEEEcHHHHHHHHHHHHHHHHHcCCCCCCEEEEEcCCchhHHHHH
Confidence 45689999999999999999999886 42 22378999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCeeeeccCCC---ChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCc
Q 010515 121 EACNALGLHCVPLYDTL---GAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (508)
Q Consensus 121 lA~~~~G~~~vpl~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~ 197 (508)
|||+++|++++|+++.. +.+++..+++.+++++++++.+....+........+....+.
T Consensus 83 lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~------------------ 144 (590)
T 3kxw_A 83 LGCLYAGCIAVPIYPPAQEKLLDKAQRIVTNSKPVIVLMIADHIKKFTADELNTNPKFLKIP------------------ 144 (590)
T ss_dssp HHHHHTTCEEEEECCCCSHHHHHHHHHHHHHHCCSEEEECHHHHHHHCC-----CCEETTEE------------------
T ss_pred HHHHHhCcEEEEecCCCchHHHHHHHHHHHhCCCCEEEeCHHHHHHHHHhhhhhcccccccc------------------
Confidence 99999999999999988 457899999999999999987765554332211111111111
Q ss_pred EEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecCh
Q 010515 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (508)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 277 (508)
....+++.... ..........++++++|+|||||||.||||+++|+++.+.+..+...+ ++.++|++++.+|+
T Consensus 145 -~~~~~~~~~~~-~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~ 217 (590)
T 3kxw_A 145 -AIALESIELNR-SSSWQPTSIKSNDIAFLQYTSGSTMHPKGVMVSHHNLLDNLNKIFTSF-----HMNDETIIFSWLPP 217 (590)
T ss_dssp -EEEGGGCCGGG-GGGCCCCCCCTTSEEEEEECSSCSSSCCEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCT
T ss_pred -eeechhccccc-cccCCCCCCCCCCeEEEEeCcCCCCCceEEEeeHHHHHHHHHHHHHhh-----CCCCcCeEEEecCC
Confidence 11222211111 112233455789999999999999999999999999999998865544 78899999999999
Q ss_pred HHHHHHHH-HHHHHHcCCEEEEecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHH
Q 010515 278 AHIFDRAI-EEVFISNGAAIGFWRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAY 351 (508)
Q Consensus 278 ~~~~g~~~-~~~~l~~G~~vv~~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~ 351 (508)
+|.+++.. ++.+++.|+++++.+. ++..+++.|+++++|++.++|.++..+.+.+....
T Consensus 218 ~h~~g~~~~~~~~l~~G~~~v~~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~--------------- 282 (590)
T 3kxw_A 218 HHDMGLIGCILTPIYGGIQAIMMSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEK--------------- 282 (590)
T ss_dssp TSHHHHHTTTHHHHHHTCEEEECCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGG---------------
T ss_pred CcchhhHHHHHHHHhcCceEEEeCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhh---------------
Confidence 99999987 7788999999999864 78999999999999999999999998776321110
Q ss_pred HhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC------CceEeccCcccCCcc
Q 010515 352 SYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC------AHVLQGYGLTETCAG 425 (508)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~------~~v~~~yG~tE~~~~ 425 (508)
... ...+++|.+++||+++++++.+.+++.++ ..+++.||+||++++
T Consensus 283 -------------------~~~--------~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~ 335 (590)
T 3kxw_A 283 -------------------KEG--------LDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCYGLAEATLL 335 (590)
T ss_dssp -------------------GTT--------CCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEEECGGGSSE
T ss_pred -------------------ccC--------CCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCccccccccccccccce
Confidence 000 11248999999999999999999998873 479999999999988
Q ss_pred eeccCCC--------------------------CcccCCcccccccCeeEEEeecCC-CcccCCCCCCCceEEEecCccc
Q 010515 426 TFVSLPN--------------------------EMSMIGTVGPPVPNVDVCLESVPE-MEYDALSSTPRGEVCVKGSTVF 478 (508)
Q Consensus 426 ~~~~~~~--------------------------~~~~~~s~G~p~~~~~v~Iv~~~~-~~~~~~~~~~~Gel~v~g~~v~ 478 (508)
++...+. .....+++|+|+++ ++|+| ++ +.+ ++.|+.|||+|+||+++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~--v~i~d-~~~~~~--~~~g~~GEl~v~g~~v~ 410 (590)
T 3kxw_A 336 VTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQE--VKIID-PDTLIP--CDFDQVGEIWVQSNSVA 410 (590)
T ss_dssp EEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSE--EEEEC-TTTCCB--CCTTBCEEEEEESTTSC
T ss_pred eecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCC--eEEEc-CCCCcC--CCCCCEEEEEEeCCccc
Confidence 7754321 11223688999998 88888 55 444 44568999999999999
Q ss_pred ccccCChhhhhhhccc-------C--ceecCcccccc
Q 010515 479 SGYYKREDLTKEVMVD-------G--WFHTGCPHLFL 506 (508)
Q Consensus 479 ~gY~~~~~~~~~~f~~-------g--w~~TGD~g~~~ 506 (508)
.||||+|+.|.++|.+ | ||+|||+|++.
T Consensus 411 ~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d 447 (590)
T 3kxw_A 411 KGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH 447 (590)
T ss_dssp CCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE
T ss_pred ccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE
Confidence 9999999999999942 5 99999999874
No 28
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=100.00 E-value=3.5e-55 Score=454.98 Aligned_cols=372 Identities=24% Similarity=0.313 Sum_probs=295.6
Q ss_pred CCCCCCCHHHHHHHHHHhCCC-CCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHH
Q 010515 39 PIPGMESCWDVFRMAVERNPN-NRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI 117 (508)
Q Consensus 39 ~~~~~~tl~~~l~~~a~~~pd-~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~ 117 (508)
...++.|+.+.|.++++++|+ ++|+++. + +++||+||.++++++|+.|. .||+|+++++|+++++
T Consensus 17 ~~~~~~tl~~~l~~~a~~~p~d~~Al~~~----~-----~~~Ty~eL~~~~~~~A~~L~-----~~~~V~i~~~~~~~~~ 82 (505)
T 3nyq_A 17 RGSHMSSLFPALSPAPTGAPADRPALRFG----E-----RSLTYAELAAAAGATAGRIG-----GAGRVAVWATPAMETG 82 (505)
T ss_dssp -------CCTTTSSCCCSGGGGSEEEEET----T-----EEEEHHHHHHHHHHHHTTCC--------CEEEECCSSHHHH
T ss_pred CCcccchhHHHHHHHHHhCCCCCeEEEEC----C-----eeeeHHHHHHHHHHHHhhcc-----CCCEEEEEcCCCHHHH
Confidence 345578899999999999887 9999864 2 68999999999999998774 4899999999999999
Q ss_pred HHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCc
Q 010515 118 IGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGL 197 (508)
Q Consensus 118 ~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~ 197 (508)
+++|||+++|++++|+++.++.+++.+++++++++++|++.+... ......+..+ .....
T Consensus 83 ~~~la~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~vi~~~~~~~------~~~~~~~~~~-~~~~~------------- 142 (505)
T 3nyq_A 83 VAVVAALLAGVAAVPLNPKSGDKELAHILSDSAPSLVLAPPDAEL------PPALGALERV-DVDVR------------- 142 (505)
T ss_dssp HHHHHHHHHTCCEEEECTTCCHHHHHHHHHHHCCSEEEECTTCCC------CGGGTTSEEE-ECCTT-------------
T ss_pred HHHHHHHHhCCEEEEcCCCCCHHHHHHHHHHCCCCEEEECCcccc------chhhcccccc-ccccc-------------
Confidence 999999999999999999999999999999999999999865210 0000122221 11110
Q ss_pred EEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecCh
Q 010515 198 AVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL 277 (508)
Q Consensus 198 ~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~ 277 (508)
...........++++++|+|||||||.||||+++|+++.+.+..+...+ ++.++|++++.+|+
T Consensus 143 ------------~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgV~~sh~~l~~~~~~~~~~~-----~~~~~d~~l~~~p~ 205 (505)
T 3nyq_A 143 ------------ARGAVPEDGADDGDPALVVYTSGTTGPPKGAVIPRRALATTLDALADAW-----QWTGEDVLVQGLPL 205 (505)
T ss_dssp ------------CCCCCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHHHHHHHHH-----TCCTTCEEEECCCT
T ss_pred ------------cccCCCCCCCCCCCeEEEEeCCCCcCCCCeEEEeHHHHHHHHHHHHHHh-----CCCCCcEEEEeccH
Confidence 0011122345778999999999999999999999999999998866555 78899999999999
Q ss_pred HHHHHHHH-HHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHH
Q 010515 278 AHIFDRAI-EEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKF 355 (508)
Q Consensus 278 ~~~~g~~~-~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (508)
+|..++.. .+.++..|+++++.+. ++..+++.+ ++++|+++++|+++..+.+.+...
T Consensus 206 ~~~~g~~~~~~~~l~~G~~~~~~~~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~-------------------- 264 (505)
T 3nyq_A 206 FHVHGLVLGILGPLRRGGSVRHLGRFSTEGAAREL-NDGATMLFGVPTMYHRIAETLPAD-------------------- 264 (505)
T ss_dssp TSHHHHTTTTHHHHHHTCEEEECSSCCHHHHHHHH-TTTCCEEEECHHHHHHHHHHGGGC--------------------
T ss_pred HHHHHHHHHHHHHHhcCCEEEECCCCChHHHHHHH-hhCCeEEEehHHHHHHHHHhhhcC--------------------
Confidence 99999875 7788999999999876 899999999 889999999999999987632111
Q ss_pred hhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcc
Q 010515 356 HNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMS 435 (508)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~ 435 (508)
+. ....+ +++|.+++||+++++++.+.+++.+++++++.||+||+++.++...... .
T Consensus 265 -------------~~-~~~~l--------~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~-~ 321 (505)
T 3nyq_A 265 -------------PE-LAKAL--------AGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETLMNTSVRADGE-P 321 (505)
T ss_dssp -------------HH-HHHHH--------HHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTEEEEECCTTSC-C
T ss_pred -------------ch-hhccc--------ccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcccccccCCCCC-C
Confidence 00 01112 2789999999999999999999999999999999999987766554443 3
Q ss_pred cCCcccccccCeeEEEeecCCCcccCC-CCCCCceEEEecCcccccccCChhhhhhhc-ccCceecCcccccc
Q 010515 436 MIGTVGPPVPNVDVCLESVPEMEYDAL-SSTPRGEVCVKGSTVFSGYYKREDLTKEVM-VDGWFHTGCPHLFL 506 (508)
Q Consensus 436 ~~~s~G~p~~~~~v~Iv~~~~~~~~~~-~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~~gw~~TGD~g~~~ 506 (508)
..+++|+|+++++++|+| +++.+++. +.|+.|||+|+||+++.||||+|+.|.+.| .+|||+|||+|++.
T Consensus 322 ~~~~vG~p~~~~~~~i~d-~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~~~~ 393 (505)
T 3nyq_A 322 RAGTVGVPLPGVELRLVE-EDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRD 393 (505)
T ss_dssp CTTCCCEECTTCEEEEC------CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEEEEC
T ss_pred CCCCcccCCCCCEEEEEC-CCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeEEEC
Confidence 448999999999999999 88877665 346899999999999999999999999999 79999999999975
No 29
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=100.00 E-value=3.2e-55 Score=455.62 Aligned_cols=383 Identities=21% Similarity=0.236 Sum_probs=297.7
Q ss_pred CCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHH
Q 010515 44 ESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEAC 123 (508)
Q Consensus 44 ~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~ 123 (508)
+||.++|+++++++||++|+++. + +++||+||.++++++|+.|++. +||+|+|+++|++++++++|||
T Consensus 1 mtl~~~l~~~a~~~pd~~Al~~~---~------~~~Ty~eL~~~~~~lA~~L~~~---~gd~V~i~~~n~~e~~~~~lA~ 68 (501)
T 3ipl_A 1 MSLDFWLYKQAQQNGHHIAITDG---Q------ESYTYQNLYCEASLLAKRLKAY---QQSRVGLYIDNSIQSIILIHAC 68 (501)
T ss_dssp --CCCHHHHHHHHHTTSEEEECS---S------CEEEHHHHHHHHHHHHHHHHTT---CCSEEEEECCSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCceEEEeC---C------cEEEHHHHHHHHHHHHHHHHHc---CCCEEEEEcCCCHHHHHHHHHH
Confidence 36778999999999999999864 2 4799999999999999999987 8999999999999999999999
Q ss_pred HhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEE-eeH
Q 010515 124 NALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAV-YSW 202 (508)
Q Consensus 124 ~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~-~~~ 202 (508)
+++|++++|+++.++.+++.++++.++++++|++............ ...+..+.......... ........ ...
T Consensus 69 ~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~li~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 143 (501)
T 3ipl_A 69 WLANIEIAMINTRLTPNEMTNQMRSIDVQLIFCTLPLELRGFQIVS--LDDIEFAGRDITTNGLL---DNTMGIQYDTSN 143 (501)
T ss_dssp HHTTCEEEECCTTSCHHHHHHHHHHTTCCEEEESSCCCCTTSEEEE--TTC-----------------------------
T ss_pred HHcCCEEEecCccCCHHHHHHHHHhcCCCEEEEccccccccccccc--cccceeeeeeccccccc---ccccccccccch
Confidence 9999999999999999999999999999999999875443321110 01111111100000000 00000000 001
Q ss_pred HHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHH
Q 010515 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (508)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 282 (508)
+.................++++++|+|||||||.||||.++|+++.+.+......+ ++.+++++++.+|++|.++
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~d~a~i~~TSGTTG~PKgv~~th~~~~~~~~~~~~~~-----~~~~~d~~l~~~p~~~~~g 218 (501)
T 3ipl_A 144 ETVVPKESPSNILNTSFNLDDIASIMFTSGTTGPQKAVPQTFRNHYASAIGCKESL-----GFDRDTNWLSVLPIYHISG 218 (501)
T ss_dssp ------CCHHHHTCCCCCTTSEEEEEECCTTTSCCCEEEEEHHHHHHHHHHHHHHT-----CCCTTCEEEECSCTTSHHH
T ss_pred hhccccCCcccccccCCCCCCeEEEEECCCCCCCCcEEEEeHHHHHHHHHHHHHhh-----CCCccCEEEEeCcHHHHHH
Confidence 11111111111122345789999999999999999999999999999888855544 7889999999999999999
Q ss_pred HHHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcC
Q 010515 283 RAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKG 361 (508)
Q Consensus 283 ~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (508)
+...+.+++.|+++++.+. ++..+++.|+++++|+++++|+++..+.+....
T Consensus 219 ~~~~~~~l~~G~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--------------------------- 271 (501)
T 3ipl_A 219 LSVLLRAVIEGFTVRIVDKFNAEQILTMIKNERITHISLVPQTLNWLMQQGLH--------------------------- 271 (501)
T ss_dssp HHHHHHHHHHTCEEEECSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCC---------------------------
T ss_pred HHHHHHHHHcCceEEeCCCCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCC---------------------------
Confidence 9888888999999999876 999999999999999999999999988652100
Q ss_pred CCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCC-cccCCcc
Q 010515 362 HKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNE-MSMIGTV 440 (508)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~-~~~~~s~ 440 (508)
...++|.+++||+++++++.+.+++ +++++++.||+||+++.+....+.. ....+++
T Consensus 272 ---------------------~~~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~ 329 (501)
T 3ipl_A 272 ---------------------EPYNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETCSQFLTATPEMLHARPDTV 329 (501)
T ss_dssp ---------------------SCTTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGTEEEEEECHHHHHHCTTCC
T ss_pred ---------------------CcCcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccccceeecCccccccCCCCC
Confidence 0026899999999999999999987 5999999999999987665544332 2345789
Q ss_pred cccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010515 441 GPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 441 G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
|+|+++++++|+| ++ .++.|||+|+|++++.|||++++.+.. |.+|||+|||+|++.
T Consensus 330 G~p~~~~~~~i~d-~~-------~~~~GEl~v~g~~~~~gY~~~~~~t~~-~~~g~~~TGDl~~~~ 386 (501)
T 3ipl_A 330 GMPSANVDVKIKN-PN-------KEGHGELMIKGANVMNGYLYPTDLTGT-FENGYFNTGDIAEID 386 (501)
T ss_dssp BEECTTCEEEEES-CC-------SSCCEEEEEESTTSCSCCSBSTTCCCS-EETTEEEEEEEEEEC
T ss_pred CCCCCCcEEEEec-CC-------CCCccEEEEeccchhhhhCcChhhcch-hcCCceecCCEEEEc
Confidence 9999999999999 44 336799999999999999999999987 889999999999975
No 30
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=100.00 E-value=1.3e-54 Score=457.44 Aligned_cols=392 Identities=19% Similarity=0.154 Sum_probs=305.9
Q ss_pred CCCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccC----CCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCC
Q 010515 37 PAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDG----KAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVN 112 (508)
Q Consensus 37 ~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~----~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n 112 (508)
.....+..|+.++|+++++++||++|+++. ++ .....+++||+||.++++++|+.|++.|+ +||+|+++++|
T Consensus 13 ~~~~~~~~tl~~~l~~~a~~~p~~~A~~~~---~~~~~~~~~~~~~~Ty~eL~~~~~~lA~~L~~~g~-~gd~V~i~~~n 88 (562)
T 3ite_A 13 SAQYTSTVPPSHYIETWAKTHPEWKAVEVA---TGFLGSQKIVTEDWTYKKLNETANQVANLIIHASL-HGRAIAVSLDR 88 (562)
T ss_dssp -----CCCCTTHHHHHHHHHCTTSEEEEEE---ECC-----CEEEEEEHHHHHHHHHHHHHHHHHTTC-SSCEEEEECCS
T ss_pred ceeecccCCHHHHHHHHHHHCCCchhhhcc---cccccccccccCCCCHHHHHHHHHHHHHHHHhcCC-CCCEEEEEeCC
Confidence 334456688999999999999999999876 32 12234789999999999999999999999 79999999999
Q ss_pred chhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHH
Q 010515 113 CPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEI 192 (508)
Q Consensus 113 ~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~ 192 (508)
++++++++|||+++|++++|+++.++.+++.+++++++++++|+++....... . .....++.....
T Consensus 89 ~~~~~~~~lA~~~~Gav~vpl~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~-----~-~~~~~~~~~~~~-------- 154 (562)
T 3ite_A 89 SLIAFAIIVGIMKSGNTYVPIEAGLPNDRKSFLLRDSRAAMAFVCDNNFDGVE-----L-PPETKVLDTKNQ-------- 154 (562)
T ss_dssp CHHHHHHHHHHHHTTCEEEECCTTSCHHHHHHHHHHHTCSEEEECTTTTTTCC-----C-CTTCEEEETTCH--------
T ss_pred CHHHHHHHHHHHHhCCEEEecCCcCHHHHHHHHHHhcCCCEEEEccccccccc-----c-Cccceeecccch--------
Confidence 99999999999999999999999999999999999999999999876543221 0 111222221110
Q ss_pred hhcCcEEeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhh---hcccCCCCCc
Q 010515 193 EKYGLAVYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLE---SVNEKLTSED 269 (508)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~---~~~~~~~~~~ 269 (508)
.+.+....... ........++++++|+|||||||.||||+++|+++.+.+..+...+. .....+...+
T Consensus 155 --------~~~~~~~~~~~-~~~~~~~~~~~~a~i~~TSGTTG~PKgV~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (562)
T 3ite_A 155 --------SFIENLSTQDT-SDILNNYPENLDAYLLYTSGSTGTPKGVRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVG 225 (562)
T ss_dssp --------HHHHHHHHSCC-SCCCCCCCTTSEEEEEEECC---CCEEEEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTC
T ss_pred --------hhhhhcccccc-cccccCCCCCCcEEEEECCCCCCCCcEEEECchhHHHHHHHHHhhhccccchhcccCcCc
Confidence 12222222211 11223446788999999999999999999999999988776544321 1223567889
Q ss_pred EEEEecChHHHHHHHHHHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHH
Q 010515 270 VYVSYLPLAHIFDRAIEEVFISNGAAIGFWRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLF 347 (508)
Q Consensus 270 ~~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~ 347 (508)
++++..|+.|..++...+.++..|+++++.+. .+..+.+.++++++|+++++|++++.+...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~l~~~~~~---------------- 289 (562)
T 3ite_A 226 KFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELGVTHAGIVPSLLDQTGLV---------------- 289 (562)
T ss_dssp EEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTTCCEEEECHHHHHHHTCC----------------
T ss_pred eEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcCCCEEEcCHHHHhhcccC----------------
Confidence 99999999988887778888999999998765 467888999999999999999987764210
Q ss_pred HHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCccee
Q 010515 348 NIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTF 427 (508)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~ 427 (508)
+ ...+++|.+++||+++++++.+.+++.+++.+++.||+||+++.++
T Consensus 290 ---------------------~------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~ 336 (562)
T 3ite_A 290 ---------------------P------------EDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVTIGCS 336 (562)
T ss_dssp ---------------------G------------GGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGCSCSE
T ss_pred ---------------------c------------cccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchheeeee
Confidence 0 0114899999999999999999999988999999999999988777
Q ss_pred ccCCCCcccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccC--ceecCccccc
Q 010515 428 VSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDG--WFHTGCPHLF 505 (508)
Q Consensus 428 ~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~g--w~~TGD~g~~ 505 (508)
..........+++|+|+++++++|+| +++. .+++.|+.|||+|+||+++.||||+|+.+...+.+| ||+|||+|++
T Consensus 337 ~~~~~~~~~~~~~G~p~~~~~~~i~d-~~~~-~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg~~ 414 (562)
T 3ite_A 337 AGRILPDSDTRCIGHPLGDSVAHVLA-PGSN-EHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIVRM 414 (562)
T ss_dssp EEECCTTSCTTEEEEECTTCEEEEEC-TTSS-CBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEEEE
T ss_pred eeeecCCCCCccccccCCCCeEEEEe-CCCC-CCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEEEE
Confidence 66554444458899999999999999 4433 234456899999999999999999999988777666 9999999998
Q ss_pred c
Q 010515 506 L 506 (508)
Q Consensus 506 ~ 506 (508)
+
T Consensus 415 d 415 (562)
T 3ite_A 415 D 415 (562)
T ss_dssp C
T ss_pred c
Confidence 5
No 31
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=100.00 E-value=5.9e-52 Score=474.69 Aligned_cols=372 Identities=19% Similarity=0.237 Sum_probs=305.5
Q ss_pred CCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHH
Q 010515 43 MESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEA 122 (508)
Q Consensus 43 ~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA 122 (508)
..++.++|+++++++||++|+++. + +++||+||.++++++|+.|++.|+++||+|+|+++|++++++++||
T Consensus 463 ~~~l~~~~~~~~~~~p~~~Av~~~---~------~~lTY~eL~~~a~~lA~~L~~~Gv~~g~~V~i~~~~s~~~vv~~la 533 (1304)
T 2vsq_A 463 TKPLTYWFKEAVNANPDAPALTYS---G------QTLSYRELDEEANRIARRLQKHGAGKGSVVALYTKRSLELVIGILG 533 (1304)
T ss_dssp CCCHHHHHHHHHHHCTTSEEEESS---S------CEEEHHHHHHHHHHHHHHHHHTTCCTTCEEEECCCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEC---C------eeEcHHHHHHHHHHHHHHHHhcCcCCcCEEEEEeCCCHHHHHHHHH
Confidence 478999999999999999999864 2 4799999999999999999999999999999999999999999999
Q ss_pred HHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCChhhHHHHhhcCcEEeeH
Q 010515 123 CNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVKPEQREEIEKYGLAVYSW 202 (508)
Q Consensus 123 ~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~~~~~~~~~~~~~~~~~~ 202 (508)
|+++|++++|++|.++.+++..++++++++++|++.+....+... +.....+.+++...
T Consensus 534 ilkaG~~~vpldp~~p~~rl~~il~~~~~~~vl~~~~~~~~~~~~-----~~~~~~~~~~~~~~---------------- 592 (1304)
T 2vsq_A 534 VLKAGAAYLPVDPKLPEDRISYMLADSAAACLLTHQEMKEQAAEL-----PYTGTTLFIDDQTR---------------- 592 (1304)
T ss_dssp HHHTTCEEEECCTTSCHHHHHHHHHHHTCCEEEECSTTCTTSTTC-----CCCSEEEESSCGGG----------------
T ss_pred HHHHCCEEEEECCCCHHHHHHHHHHHcCCCEEEECcchhhhhhcc-----CCCCcEEEeccccc----------------
Confidence 999999999999999999999999999999999987654332211 12223333332100
Q ss_pred HHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHH
Q 010515 203 DEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFD 282 (508)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g 282 (508)
.............+++++||+|||||||.||||+++|+++.+.. . ......+.++++++...|++|..+
T Consensus 593 -----~~~~~~~~~~~~~~~~~ayiiyTSGSTG~PKgV~~~h~~l~~~~-~-----~~~~~~~~~~d~~l~~~~~~fd~~ 661 (1304)
T 2vsq_A 593 -----FEEQASDPATAIDPNDPAYIMYTSGTTGKPKGNITTHANIQGLV-K-----HVDYMAFSDQDTFLSVSNYAFDAF 661 (1304)
T ss_dssp -----GGSCSSCCCCCCCTTSEEEEEEECCSSSSCEEEEEEHHHHHHHH-S-----SCCSSCCCTTCEEEECSCTTSTHH
T ss_pred -----cccccCCCCCCCCCCCeEEEEeCCCCCCCCCEEEEehHHHHHHH-H-----HHHhcCCCCCCEEEEECCccHHHH
Confidence 00011112234578999999999999999999999999998763 3 223346788999999999998777
Q ss_pred HHHHHHHHHcCCEEEEecC----CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhh
Q 010515 283 RAIEEVFISNGAAIGFWRG----DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNL 358 (508)
Q Consensus 283 ~~~~~~~l~~G~~vv~~~~----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 358 (508)
...++.+++.|+++++.+. ++..+.+.|+++++|+++++|++++.+.+...
T Consensus 662 ~~~~~~~l~~G~~l~~~~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~------------------------- 716 (1304)
T 2vsq_A 662 TFDFYASMLNAARLIIADEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGE------------------------- 716 (1304)
T ss_dssp HHHHHHHHTTTCEEEECCGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCS-------------------------
T ss_pred HHHHHHHHHcCCEEEECChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhch-------------------------
Confidence 7778889999999999874 89999999999999999999999998764200
Q ss_pred hcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhC-CceEeccCcccCCcceeccCCCC---c
Q 010515 359 KKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVAC-AHVLQGYGLTETCAGTFVSLPNE---M 434 (508)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~-~~v~~~yG~tE~~~~~~~~~~~~---~ 434 (508)
..+ +++|.+++|||++++++.+.+.+.++ +.++|.||+||+++.++...... .
T Consensus 717 ---------------~~~--------~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~ 773 (1304)
T 2vsq_A 717 ---------------DWM--------KGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEGTVFATAHVVHDLPDS 773 (1304)
T ss_dssp ---------------HHH--------HTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGGSSCSEEEECCCCCSS
T ss_pred ---------------hcC--------CCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHHhHHheeeeccCcccc
Confidence 001 27999999999999999998888774 78999999999998776544322 2
Q ss_pred ccCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhc-c------cCceecCcccccc
Q 010515 435 SMIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVM-V------DGWFHTGCPHLFL 506 (508)
Q Consensus 435 ~~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f-~------~gw~~TGD~g~~~ 506 (508)
....++|+|+++++++|+| ++++.+|.| +.|||+|+|++++.||+|+|+.|.++| . ++||+|||+|++.
T Consensus 774 ~~~~~iG~p~~~~~~~i~d-~~~~~~p~G--~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~~yrTGDl~~~~ 849 (1304)
T 2vsq_A 774 ISSLPIGKPISNASVYILN-EQSQLQPFG--AVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRTGDLARWL 849 (1304)
T ss_dssp CSSCCCBEECTTEEEEEEC-TTSCBCCTT--CCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCEEEEEEEEEEEC
T ss_pred CCCCCCceeeCCCEEEEEC-CCcCCCCCC--CceEEEEeccccCccccCCcccchhhhccCCCCCCCeeEecCCeEEEc
Confidence 2336899999999999999 877766654 899999999999999999999999999 3 3499999999975
No 32
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=99.97 E-value=4e-32 Score=268.66 Aligned_cols=204 Identities=18% Similarity=0.141 Sum_probs=169.6
Q ss_pred CCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHHHHHHHHcCCEEEEec
Q 010515 221 KNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAIEEVFISNGAAIGFWR 300 (508)
Q Consensus 221 ~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~vv~~~ 300 (508)
.++++||+|||||||.||||++||+++.+.+..+...+ ++.++|++++++|++|.+|+..++.++..|+++++.+
T Consensus 36 ~d~~a~Il~TSGTTG~PKgV~~th~~l~~~~~~~~~~~-----~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~~~~ 110 (358)
T 4gs5_A 36 GGAREFVLHTSGSTGMPKPITVTRAQLAASAAMTGKAL-----SLGPGTRALVCLNVGYIAGLMMLVRGMELDWELTVTE 110 (358)
T ss_dssp HTCSEEEEEEECTTSSEEEEEEEHHHHHHHHHHHHHHT-----TCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEEC
T ss_pred CCCCEEEEECCcccccCcEEEEeHHHHHHHHHHHHHHh-----CCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEEecC
Confidence 37899999999999999999999999999988865554 7889999999999999999988888899999998886
Q ss_pred CCHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHH
Q 010515 301 GDVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVK 380 (508)
Q Consensus 301 ~~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (508)
.. ...++.|+++++|++.++|+++..+++.... ..++
T Consensus 111 ~~-~~~~~~i~~~~~t~~~~~P~~l~~ll~~~~~--------------------------------------~~~l---- 147 (358)
T 4gs5_A 111 PT-ANPLAGLDHADFDFVAMVPMQLQSILENSAT--------------------------------------SGQV---- 147 (358)
T ss_dssp CC-SCTTTTCSSCCCSEEEECHHHHHHHHHCTTT--------------------------------------GGGG----
T ss_pred cc-ccHHHHHHHhCCeEEEcChHHHHHhhccccc--------------------------------------cccC----
Confidence 42 2346779999999999999999988652110 0011
Q ss_pred HHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCcccccccCeeEEEeecCCCccc
Q 010515 381 QSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESVPEMEYD 460 (508)
Q Consensus 381 ~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~~~~~~~ 460 (508)
+++|.+++||+++++++.+++++ +++++++.||+||+++.+.....+... .+++|.+.||+++.+.+
T Consensus 148 ----~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~~~~~~~~~~~~~-~g~~~~~~pgv~~~~~~------- 214 (358)
T 4gs5_A 148 ----DRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETVSHVALKALNGPE-ASELYVFLPGIQYGVDE------- 214 (358)
T ss_dssp ----GGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGSSEEEEEECSSTT-CCSCEEECTTCEEEECT-------
T ss_pred ----CcceEEEEcccCCCchheecccc-cCceEEeccccccccceeecccccccc-cceeeccCCCeEEEecC-------
Confidence 37999999999999999999987 589999999999999877766554433 38899999999988644
Q ss_pred CCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010515 461 ALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 461 ~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
.|||+++|+.+ .+|||+|||+|++.
T Consensus 215 ------~Gel~~~g~~~---------------~~g~~~TGDlg~~d 239 (358)
T 4gs5_A 215 ------RGCLHISGAVT---------------NGQTVQTNDLVEIH 239 (358)
T ss_dssp ------TSEEEEESGGG---------------TTCCEEEEEEEEEC
T ss_pred ------cCceEEecccc---------------cCcceecCCccccc
Confidence 59999998642 37999999999875
No 33
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=99.97 E-value=3.7e-31 Score=269.58 Aligned_cols=227 Identities=16% Similarity=0.085 Sum_probs=178.1
Q ss_pred CCCC-CCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHH-HHHHHHHcCCE
Q 010515 218 VKKK-NDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRA-IEEVFISNGAA 295 (508)
Q Consensus 218 ~~~~-~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~-~~~~~l~~G~~ 295 (508)
...+ +++++++|||||||.||+|.++|+++.+....+...+ ...++.++|++++.+|+.|..+.. ..+.++..|++
T Consensus 81 ~~~~~~~~a~i~~TSGTTG~PK~v~~th~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~ 158 (436)
T 3qov_A 81 AGDMKRDGVRIHSSSGTTGNPTVIVHSQHDLDSWANLVARCL--YMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCL 158 (436)
T ss_dssp CSCHHHHEEEEEECSCSSSCCCEEEEEHHHHHHHHHHHHHHH--HHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCE
T ss_pred cCCCcCCeEEEEECCCcCCCCeEEEECHHHHHHHHHHHHHHH--HHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCE
Confidence 3455 8899999999999999999999999988776654322 223678899999999986555544 46777999999
Q ss_pred EEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHH
Q 010515 296 IGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKI 374 (508)
Q Consensus 296 vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (508)
+++.+. ++..+++.|+++++|+++++|+++..|++..........
T Consensus 159 ~~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~---------------------------------- 204 (436)
T 3qov_A 159 TVPAAAGNSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPR---------------------------------- 204 (436)
T ss_dssp EECCCSCCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTT----------------------------------
T ss_pred EEeCCCCCHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcc----------------------------------
Confidence 998865 999999999999999999999999999875443321100
Q ss_pred hHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcceeccCCCCcccCCcccccccCeeEEEeec
Q 010515 375 VFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAGTFVSLPNEMSMIGTVGPPVPNVDVCLESV 454 (508)
Q Consensus 375 ~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~~~~~~~~~~~~~~s~G~p~~~~~v~Iv~~ 454 (508)
.+++|.+++||+++++++.+.+++.||+.+++.||+||+++.++...... . ...|.|.++++++|+|.
T Consensus 205 ---------~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~--~-~g~~~~~~~~~v~i~d~ 272 (436)
T 3qov_A 205 ---------ETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMNGPGVAFECQE--Q-NGMHFWEDCYLVEIIDP 272 (436)
T ss_dssp ---------SSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGTEEEEEEECTT--C-SSEEECTTTEEEEEECT
T ss_pred ---------cCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhcCCeeEEecCC--C-CeeEEccCceEEEEEEC
Confidence 14799999999999999999999999999999999999965533222211 1 33677888999999994
Q ss_pred CCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010515 455 PEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 455 ~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
+++..++ .|+.|||+|+|. +.+.|.++||+|||+|++.
T Consensus 273 ~~g~~~~--~g~~Gel~v~~~------------~~~~~~~~~y~TGDl~~~~ 310 (436)
T 3qov_A 273 ETGEPVP--EGEIGELVLTTL------------DREMMPLIRYRTRDLTRIL 310 (436)
T ss_dssp TTCSBCS--TTCCEEEEEEES------------SCCSSCCCSEEEEEEECEE
T ss_pred CCCCCCC--CCCceEEEEecc------------CcCCceEEEEEcCCEEEEc
Confidence 4555554 558999999984 2344578999999999874
No 34
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=99.97 E-value=1.6e-30 Score=265.02 Aligned_cols=242 Identities=16% Similarity=0.083 Sum_probs=183.6
Q ss_pred eeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecCh-H
Q 010515 200 YSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL-A 278 (508)
Q Consensus 200 ~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~ 278 (508)
.+.+++.... +.......++++++++|||||||.||+|.++|+++......+...+ ...++.++|++++.+|+ +
T Consensus 71 ~~~~~l~~~~---~~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~--~~~~~~~~d~~~~~~~~~~ 145 (437)
T 2y27_A 71 TTKGDLRDSY---PFGMFAVPQDRISRIHASSGTTGKPTVVGYTAADIDTWANLVARSI--RAAGARRGDKVHVSYGYGL 145 (437)
T ss_dssp BCHHHHHHTT---TTTTCSSCGGGCCEEEECCCTTSSCCEEEECHHHHHHHHHHHHHHH--HHTTCCTTCEEEECSCCSS
T ss_pred CCHHHHHhcC---CCccccCChhHeEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHH--HHcCCCCCCEEEEcccccc
Confidence 3455555433 1123344678999999999999999999999999987765543321 12367889999999998 6
Q ss_pred HHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHhh
Q 010515 279 HIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHN 357 (508)
Q Consensus 279 ~~~g~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (508)
|..++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++.........
T Consensus 146 ~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~------------------ 207 (437)
T 2y27_A 146 FTGGLGAHYGAERAGLTVIPFGGGQTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDP------------------ 207 (437)
T ss_dssp SHHHHHHHHHHHHTTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG------------------
T ss_pred cccchHHHHHHHHcCCEEEeCCCCCHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCc------------------
Confidence 77777777788999999998765 99999999999999999999999999887543321100
Q ss_pred hhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcc-eeccCCCCccc
Q 010515 358 LKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMSM 436 (508)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~-~~~~~~~~~~~ 436 (508)
..+++|.+++||+++++++.+.+++.+|+.+++.||+||+++. +....+...
T Consensus 208 -------------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~~-- 260 (437)
T 2y27_A 208 -------------------------VQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVMGPGVASECVETK-- 260 (437)
T ss_dssp -------------------------GGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTTEEEEEECCTTTC--
T ss_pred -------------------------ccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhcCCeeEEecCCCC--
Confidence 0137999999999999999999999899999999999998543 332222111
Q ss_pred CCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010515 437 IGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 437 ~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
..++.|.+++.++|+|.+++..++ .|+.|||+|+|. +.+.|.++||+|||+|++.
T Consensus 261 -~g~~~~~~~~~~~i~d~~~g~~~~--~g~~Gel~v~~~------------t~~~~~~~~y~TGDl~~~~ 315 (437)
T 2y27_A 261 -DGPTIWEDHFYPEIIDPETGEVLP--DGELGELVFTSL------------TKEALPIIRYRTRDLTRLL 315 (437)
T ss_dssp -SSCEECTTTEEEEEECTTTCCBCC--TTCCEEEEEEES------------SCSSSCCCSEEEEEEECEE
T ss_pred -CceeEccCceEEEEEcCCCCCCCC--CCCccEEEEecC------------CcCCchhheeecCCEEEEe
Confidence 125667789999999933355544 568999999983 3345678999999999875
No 35
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=99.97 E-value=2.9e-30 Score=263.49 Aligned_cols=243 Identities=15% Similarity=0.087 Sum_probs=183.1
Q ss_pred EeeHHHHHHcccCCCCCCCCCCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecCh-
Q 010515 199 VYSWDEFLQLGENKQFDLPVKKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL- 277 (508)
Q Consensus 199 ~~~~~~l~~~~~~~~~~~~~~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~- 277 (508)
..+.+++.... +.......++++++++|||||||.||+|.++|+++......+...+ ...++.++|+++..+|+
T Consensus 72 ~~~~~~l~~~~---p~~~~~~~~~~~~~i~~TSGTTG~PK~v~~t~~~~~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~ 146 (443)
T 2y4o_A 72 FSTKNDLRDNY---PFGLFAVPREQVVRVHASSGTTGKPTVVGYTARDIDTWANVTARSI--RAAGGRPGDTLHNAFGYG 146 (443)
T ss_dssp CBCHHHHHTTT---TTTTCSSCGGGCCEEEEECCSSSSCEEEEECHHHHHHHHHHHHHHH--HHTTCCTTCEEEECSCCS
T ss_pred CCcHHHHHhhC---CCcccCCChhheEEEEECCCCCCCceEEecCHHHHHHHHHHHHHHH--HHcCCCCCCEEEEeccCc
Confidence 34455555433 1223344678999999999999999999999999987765544321 12367889999999998
Q ss_pred HHHHHHHHHHHHHHcCCEEEEecC-CHHHHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhHHh
Q 010515 278 AHIFDRAIEEVFISNGAAIGFWRG-DVKLLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYKFH 356 (508)
Q Consensus 278 ~~~~g~~~~~~~l~~G~~vv~~~~-~~~~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (508)
.|..++...+.++..|+++++.+. ++..+++.|+++++|+++++|+++..|++.........
T Consensus 147 ~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~----------------- 209 (443)
T 2y4o_A 147 LFTGGLGIHYGAERLGCMVVPMSGGQTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDP----------------- 209 (443)
T ss_dssp SSHHHHHHHHHHHHHTCEEECCCSCCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCG-----------------
T ss_pred ccccHHHHHHHHHHcCCEEEECCCCCHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCc-----------------
Confidence 566777677788999999988875 99999999999999999999999999887543321100
Q ss_pred hhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHHHHhCCceEeccCcccCCcc-eeccCCCCcc
Q 010515 357 NLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLRVVACAHVLQGYGLTETCAG-TFVSLPNEMS 435 (508)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~~~~~~~v~~~yG~tE~~~~-~~~~~~~~~~ 435 (508)
..+++|.+++||+++++++.+.+++.+|+++++.||+||+++. +.......
T Consensus 210 --------------------------~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~g~~~~~~~~~~-- 261 (443)
T 2y4o_A 210 --------------------------AESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVMGPGVACECVET-- 261 (443)
T ss_dssp --------------------------GGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTTEEEEEEECTTT--
T ss_pred --------------------------ccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhcCCeEEeccCCC--
Confidence 0137999999999999999999999999999999999998543 33222211
Q ss_pred cCCcccccccCeeEEEeecCCCcccCCCCCCCceEEEecCcccccccCChhhhhhhcccCceecCcccccc
Q 010515 436 MIGTVGPPVPNVDVCLESVPEMEYDALSSTPRGEVCVKGSTVFSGYYKREDLTKEVMVDGWFHTGCPHLFL 506 (508)
Q Consensus 436 ~~~s~G~p~~~~~v~Iv~~~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~~~~~f~~gw~~TGD~g~~~ 506 (508)
. ...+.|.+++.++|+|.+++..++ .|+.|||+|+|. +.+.|.++||+|||+|++.
T Consensus 262 ~-~g~~~~~~~~~~~i~d~~~g~~~~--~G~~Gel~v~~~------------t~~~~p~~~y~TGDl~~~~ 317 (443)
T 2y4o_A 262 K-DGPVIWEDHFYPEIIDPVTGEVLP--DGSQGELVFTSL------------TKEAMPVIRYRTRDLTALL 317 (443)
T ss_dssp C-CSEEECTTTEEEEEECTTTCCBCC--TTCCEEEEEEES------------SCSSSCCSSEEEEEEECEE
T ss_pred C-CceEEccCCeEEEEEcCCCCCCCC--CCCceEEEEeCC------------CcccChhheeecCCEEEEc
Confidence 1 125567789999999933455554 568999999983 2344568999999999875
No 36
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=99.96 E-value=5.8e-29 Score=247.71 Aligned_cols=228 Identities=15% Similarity=0.102 Sum_probs=175.9
Q ss_pred CCCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecCh-HHHHHHHHHHHHHHcCCEEE
Q 010515 219 KKKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPL-AHIFDRAIEEVFISNGAAIG 297 (508)
Q Consensus 219 ~~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~-~~~~g~~~~~~~l~~G~~vv 297 (508)
..++++++|+|||||||.||+|.++|+++......+... ....++.++|++++.+|+ +|..++...+.++..|+.++
T Consensus 88 ~~~~~~a~i~~TSGTTG~PKgv~~t~~~~~~~~~~~~~~--~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~ 165 (369)
T 3hgu_A 88 LPADSHPQVYESGGTTGAPKYVVAYDAWIEALISWRMSG--YQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFF 165 (369)
T ss_dssp SCTTCCCEEEEECC---CCEEEEECHHHHHHHHHHHTTT--TTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEE
T ss_pred CCccccEEEEECCCCCCCCCEEEECHHHHHHHHHHHHhh--HHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEE
Confidence 467889999999999999999999999999888754332 233467889999999999 99999988777789999444
Q ss_pred EecCCHH-----------------------HHHHHhhhcCCeEEEeCcHHHHHHHHHHHHhhhccChhHHHHHHHHHHhH
Q 010515 298 FWRGDVK-----------------------LLLEDIGELKPTIFCAVPRVLDRIYSGLNQKISSGGLLKKTLFNIAYSYK 354 (508)
Q Consensus 298 ~~~~~~~-----------------------~~~~~i~~~~~t~l~~~P~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (508)
..++++. .+++.|+++++|++.++|+++..|++...
T Consensus 166 ~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~--------------------- 224 (369)
T 3hgu_A 166 SIDIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLKRPE--------------------- 224 (369)
T ss_dssp CCCCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTTCHH---------------------
T ss_pred CccCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHhhhh---------------------
Confidence 4444776 88889999999999999999999875211
Q ss_pred HhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEEEEEEcCCCCCHHHHHHHH-HHh-CCceEeccCcccCCcceeccCCC
Q 010515 355 FHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVRLILSGAAPLTPHVETFLR-VVA-CAHVLQGYGLTETCAGTFVSLPN 432 (508)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~i~~~G~~l~~~~~~~~~-~~~-~~~v~~~yG~tE~~~~~~~~~~~ 432 (508)
....++ +++|.+++||+++++++.+.++ +.| ++.+++.||+||+++++..+..
T Consensus 225 ----------------~~~~~~--------~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE~~~~~~~~~~- 279 (369)
T 3hgu_A 225 ----------------VVLQMK--------QSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTSALGVSRSLLI- 279 (369)
T ss_dssp ----------------HHHHHH--------HHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGGGTEEEEECCB-
T ss_pred ----------------hhcccc--------CCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchhhhcceecccc-
Confidence 111112 2799999999999999999999 888 8999999999999876643321
Q ss_pred CcccCCccccc------ccCeeEEEeecC-CCcccCCCCCCCceEEEecC---cccccccCChhhhhhhcccCceecCcc
Q 010515 433 EMSMIGTVGPP------VPNVDVCLESVP-EMEYDALSSTPRGEVCVKGS---TVFSGYYKREDLTKEVMVDGWFHTGCP 502 (508)
Q Consensus 433 ~~~~~~s~G~p------~~~~~v~Iv~~~-~~~~~~~~~~~~Gel~v~g~---~v~~gY~~~~~~~~~~f~~gw~~TGD~ 502 (508)
.++|+| +++++++|+| + +++.++ .|+.|||+|++. .++.+|...+..+.....+||+.+|+-
T Consensus 280 -----~~~G~~~~~~~~~~~~~v~ivD-~~~g~~vp--~G~~GEl~vt~l~~~~~l~ry~tgD~~~~~~~~~g~~~d~~~ 351 (369)
T 3hgu_A 280 -----TSESQQVIYDSFSPFITYDVVD-SITAQTVE--YGERGNVIVTHLSPWAFYPRVAERDTAIRLPGVSGFAGDRLA 351 (369)
T ss_dssp -----CTTCSSCEEECCTTTEEEEEEC-TTTCSBCC--TTCEEEEEEEEEETTEEEEEEEEEEEEEEECCSTTCSSCEEE
T ss_pred -----ccCCCcccccCCCCCeEEEEEC-CCCCcCCC--CCCceEEEEEEcCcccccccccCCceEEEecCCCCCcCcccc
Confidence 147888 9999999999 5 666554 559999999983 346677766655555556788877753
No 37
>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}
Probab=97.22 E-value=0.0037 Score=64.28 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=34.9
Q ss_pred EEeeHHHHHHcccC--CCCCCCCCCCCCeEEEEeccCCC-CCcceEEeehHHHHHH
Q 010515 198 AVYSWDEFLQLGEN--KQFDLPVKKKNDICTIMYTSGTT-GDPKGVMVSNENIVTF 250 (508)
Q Consensus 198 ~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~i~~TSGtT-G~pK~V~~sh~~l~~~ 250 (508)
.+.+++++....+. ......-..++.+.++..||||| |++|.+.+|...+-..
T Consensus 73 Pv~~Yedl~p~ieRi~~Ge~~~il~~~~i~~f~~SSGTT~gk~K~IP~t~~~l~~~ 128 (609)
T 4b2g_A 73 PVIKYEDLQPEIQRIANGDRSAILSAHPISEFLTSSGTSAGERKLMPTIQEELDRR 128 (609)
T ss_dssp CCBCHHHHHHHHHHHHTTCCSSSSCSSCCCEEEEEEEEETTEEEEEEECTTHHHHH
T ss_pred CCccHHHHHHHHHHHhcCCCCCccCCCCCCeEEeCCCCCCCCceeeecCHHHHHHH
Confidence 35566665443211 01111233667788999999999 7899999999987653
No 38
>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*
Probab=97.08 E-value=0.017 Score=59.22 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=34.6
Q ss_pred EEeeHHHHHHcccCCCC-CC-CCCCCCCeEEEEeccCCC-CCcceEEeehHHHHHH
Q 010515 198 AVYSWDEFLQLGENKQF-DL-PVKKKNDICTIMYTSGTT-GDPKGVMVSNENIVTF 250 (508)
Q Consensus 198 ~~~~~~~l~~~~~~~~~-~~-~~~~~~~~a~i~~TSGtT-G~pK~V~~sh~~l~~~ 250 (508)
.+.+++++....+.... +. .-..++.+.+...||||| |.+|-+.+|...+-..
T Consensus 67 Pi~~Yedl~pyIeRi~~Ge~~~iL~~~pi~~F~~SSGTT~g~~K~IP~T~e~l~~~ 122 (581)
T 4eql_A 67 PIVSYEDIKPYLDRVVNGESSDVISARTITGFLLSSGTSGGAQKMMPWNNKYLDNL 122 (581)
T ss_dssp CCBCHHHHHHHHHHHHTTCCGGGTCSSCCCEEEEEEEEETTEEEEEEECHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcCCCCcccCCCCCCeEEeCCCCCCCCccccccCHHHHHHH
Confidence 35567665443321111 11 223567778999999999 6799999999987553
No 39
>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}
Probab=96.88 E-value=0.0068 Score=62.01 Aligned_cols=52 Identities=19% Similarity=0.198 Sum_probs=34.9
Q ss_pred EEeeHHHHHHcccC--CCCCCCCCCCCCeEEEEeccCCC-CCcceEEeehHHHHH
Q 010515 198 AVYSWDEFLQLGEN--KQFDLPVKKKNDICTIMYTSGTT-GDPKGVMVSNENIVT 249 (508)
Q Consensus 198 ~~~~~~~l~~~~~~--~~~~~~~~~~~~~a~i~~TSGtT-G~pK~V~~sh~~l~~ 249 (508)
.+.+++++....+. ......-..++.+.++..||||| |.+|-+..|...+-.
T Consensus 72 Pi~~Yedl~pyIeRi~~Ge~~~iL~~~pi~~f~~SSGTT~gk~K~IP~T~~~l~~ 126 (581)
T 4epl_A 72 PLVTDVELEPYIKRMVDGDTSPILTGHPVPAISLSSGTSQGRPKFIPFTDELMEN 126 (581)
T ss_dssp CCBCHHHHHHHHHHHHTTCCSSSSSSSCCSEEEEEEEEETTEEEEEEECHHHHHH
T ss_pred CCccHHHHHHHHHHHHCCCCCCccCCCCcceEEecCCCCCCCccccccCHHHHHH
Confidence 35667765543321 11112334667778999999999 779999999987755
No 40
>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}
Probab=93.34 E-value=0.7 Score=45.87 Aligned_cols=125 Identities=14% Similarity=0.030 Sum_probs=90.4
Q ss_pred CCCCCceeEEeeccCCCCc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCc--hhHHHHHHHHHhhCCeeee
Q 010515 57 NPNNRMLGQREIVDGKAGK--YVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVP 132 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~vp 132 (508)
.++.++.+... .+.++. ...+|...+...+..++..+...|+.++|++...++.+ ...+...++++..|+.+++
T Consensus 90 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~~~~~~~~~~~~~~~G~~~~~ 167 (443)
T 2y4o_A 90 PREQVVRVHAS--SGTTGKPTVVGYTARDIDTWANVTARSIRAAGGRPGDTLHNAFGYGLFTGGLGIHYGAERLGCMVVP 167 (443)
T ss_dssp CGGGCCEEEEE--CCSSSSCEEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHHTCEEEC
T ss_pred ChhheEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEeccCcccccHHHHHHHHHHcCCEEEE
Confidence 34666655441 333343 35789999998888888878788999999999888863 3445567888899999888
Q ss_pred ccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcC---CC--CCCCccEEEEeCCC
Q 010515 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF---PK--TTEHLKTIVSFSKV 184 (508)
Q Consensus 133 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~--~~~~l~~vi~~~~~ 184 (508)
++.. ..+.+...+++.++.+++.....+..+.+.. .. ....++.+++.+..
T Consensus 168 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 223 (443)
T 2y4o_A 168 MSGG-QTEKQVQLIRDFEPKIILVTPSYMLNLIDEMVRQGMDPAESSLKIGIFGAEP 223 (443)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred CCCC-CHHHHHHHHHHhCCcEEEECHHHHHHHHHHHHHcCCCcccCCceEEEECCCc
Confidence 7664 7888999999999999998887766554431 11 12578888776654
No 41
>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*
Probab=92.66 E-value=0.89 Score=45.02 Aligned_cols=125 Identities=14% Similarity=0.056 Sum_probs=90.0
Q ss_pred CCCCCceeEEeeccCCCCc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCc--hhHHHHHHHHHhhCCeeee
Q 010515 57 NPNNRMLGQREIVDGKAGK--YVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVP 132 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~vp 132 (508)
.++.++.+... .+.++. ...+|...+...+..++..+...|+.++|++...++.+ ...+...++++..|+.+++
T Consensus 88 ~~~~~~~i~~T--SGTTG~PK~v~~t~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~ 165 (437)
T 2y27_A 88 PQDRISRIHAS--SGTTGKPTVVGYTAADIDTWANLVARSIRAAGARRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIP 165 (437)
T ss_dssp CGGGCCEEEEC--CCTTSSCCEEEECHHHHHHHHHHHHHHHHHTTCCTTCEEEECSCCSSSHHHHHHHHHHHHTTCEEEC
T ss_pred ChhHeEEEEEC--CCCCCCceEEecCHHHHHHHHHHHHHHHHHcCCCCCCEEEEcccccccccchHHHHHHHHcCCEEEe
Confidence 34666655541 232332 35789999998888888878788999999999888863 3445567888999999887
Q ss_pred ccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCC---C--CCCCccEEEEeCCC
Q 010515 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP---K--TTEHLKTIVSFSKV 184 (508)
Q Consensus 133 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~--~~~~l~~vi~~~~~ 184 (508)
++.. ..+.+...+++.++.+++.....+..+.+... . ....++.+++.+..
T Consensus 166 ~~~~-~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 221 (437)
T 2y27_A 166 FGGG-QTEKQVQLIQDFRPDIIMVTPSYMLSIADEIERQGLDPVQSSLRIGIFGAEP 221 (437)
T ss_dssp CCSC-CHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCCGGGSSCCEEEEESSC
T ss_pred CCCC-CHHHHHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCCcccCCeeEEEEcCcc
Confidence 7664 78889999999999999998877666544321 1 12577777776554
No 42
>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*
Probab=92.60 E-value=1.1 Score=44.18 Aligned_cols=123 Identities=11% Similarity=0.028 Sum_probs=90.1
Q ss_pred CCCceeEEeeccCCCC--ceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCc--hhHHHHHHHHHhhCCeeeecc
Q 010515 59 NNRMLGQREIVDGKAG--KYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNC--PEWIIGMEACNALGLHCVPLY 134 (508)
Q Consensus 59 d~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~vpl~ 134 (508)
+.++.+... -+.++ ....+|.+.+...+..++..+...|+.++|++....+.+ ...+..+++++..|+.+++.+
T Consensus 86 ~~~a~i~~T--SGTTG~PK~v~~th~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~G~~~~~~~ 163 (436)
T 3qov_A 86 RDGVRIHSS--SGTTGNPTVIVHSQHDLDSWANLVARCLYMVGIRKTDVFQNSSGYGMFTGGLGFQYGAERLGCLTVPAA 163 (436)
T ss_dssp HHEEEEEEC--SCSSSCCCEEEEEHHHHHHHHHHHHHHHHHTTCCTTSEEEECSCCTTCHHHHHHHHHHHHHTCEEECCC
T ss_pred CCeEEEEEC--CCcCCCCeEEEECHHHHHHHHHHHHHHHHHcCCCCCCEEEECcccccchhHHHHHHHHHHcCCEEEeCC
Confidence 455655441 22233 236789999999888888888888999999999888753 344556788899999988776
Q ss_pred CCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcC---CC--CCCCccEEEEeCCC
Q 010515 135 DTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF---PK--TTEHLKTIVSFSKV 184 (508)
Q Consensus 135 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~--~~~~l~~vi~~~~~ 184 (508)
.. .++.+...+++.++.+++.....+..+.+.. .. ....++.+++.+..
T Consensus 164 ~~-~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~lr~i~~gGe~ 217 (436)
T 3qov_A 164 AG-NSKRQIKFISDFKTTALHAIPSYAIRLAEVFQEEGIDPRETTLKTLVIGAEP 217 (436)
T ss_dssp SC-CHHHHHHHHHHHTCCEEECCHHHHHHHHHHHHHTTCCTTSSSCCEEEEESSC
T ss_pred CC-CHHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHcCCCcccCCccEEEEeCCc
Confidence 54 6788999999999999999887766654431 11 13678888886654
No 43
>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}
Probab=90.01 E-value=4.3 Score=40.80 Aligned_cols=122 Identities=11% Similarity=0.021 Sum_probs=87.8
Q ss_pred CCCCCceeEEeeccCCCC--ceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchh-HHHHHHHHHhhCCeeeec
Q 010515 57 NPNNRMLGQREIVDGKAG--KYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE-WIIGMEACNALGLHCVPL 133 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl 133 (508)
.++.+|++... .+.++ .-..+|.+.+...+..+.. ..++.++|++...+|-.-. .+..+++++..|+.++..
T Consensus 161 ~~~d~a~i~~T--SGTTG~PKgv~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~ 235 (501)
T 3ipl_A 161 NLDDIASIMFT--SGTTGPQKAVPQTFRNHYASAIGCKE---SLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIV 235 (501)
T ss_dssp CTTSEEEEEEC--CTTTSCCCEEEEEHHHHHHHHHHHHH---HTCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCcEEEEeHHHHHHHHHHHHH---hhCCCccCEEEEeCcHHHHHHHHHHHHHHHcCceEEeC
Confidence 46777777661 22223 2367899988877666544 4588999999888876533 234467788899988876
Q ss_pred cCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCC
Q 010515 134 YDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKV 184 (508)
Q Consensus 134 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~ 184 (508)
+ ...++.+...+++.++.+++.....+..+.+........++.++..+..
T Consensus 236 ~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~lr~i~~gG~~ 285 (501)
T 3ipl_A 236 D-KFNAEQILTMIKNERITHISLVPQTLNWLMQQGLHEPYNLQKILLGGAK 285 (501)
T ss_dssp S-SCCHHHHHHHHHHSCCCEEEECHHHHHHHHHHTCCSCTTCCEEEECSSC
T ss_pred C-CCCHHHHHHHHHHcCCcEEEchHHHHHHHHhcCCCCcCcccEEEEeCCC
Confidence 5 4788999999999999999999888777766554443478887776554
No 44
>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*
Probab=84.73 E-value=3.7 Score=39.36 Aligned_cols=106 Identities=14% Similarity=0.091 Sum_probs=71.7
Q ss_pred CCCCCceeEEeeccCCCCc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCch--hHHHHHHHHHhhCCeeee
Q 010515 57 NPNNRMLGQREIVDGKAGK--YVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP--EWIIGMEACNALGLHCVP 132 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~--~~~~~~lA~~~~G~~~vp 132 (508)
.++.++.+... -+.++. ...+|.+.+...+..++..+...|+.++|++...++.+. -.+...+++...|+.+++
T Consensus 89 ~~~~~a~i~~T--SGTTG~PKgv~~t~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~g~~~~g~~~~~~~~~~G~~v~~ 166 (369)
T 3hgu_A 89 PADSHPQVYES--GGTTGAPKYVVAYDAWIEALISWRMSGYQHRPGRPSGNTLAAIPTGPHIVGAINKERALRLGGMFFS 166 (369)
T ss_dssp CTTCCCEEEEE--CC---CCEEEEECHHHHHHHHHHHTTTTTTSTTCCCCEEEECSCCTTCHHHHHHHHHHHHTTSCEEC
T ss_pred CccccEEEEEC--CCCCCCCCEEEECHHHHHHHHHHHHhhHHhhCCCCcceEEEecCCCchhhhHHHHHHHHHcCCEEEC
Confidence 45666766552 233333 256789999888887777777789999999999888632 234445556888996555
Q ss_pred ccCCCChH-----------------------HHHHHHHhcCceEEEEcCCCHHHHhh
Q 010515 133 LYDTLGAG-----------------------AVEFIICHSGVSIAFVEEKKIPEMLK 166 (508)
Q Consensus 133 l~~~~~~~-----------------------~l~~~l~~~~~~~vi~~~~~~~~~~~ 166 (508)
. .+.+. ++...+++.++.++++....+..+.+
T Consensus 167 ~--~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~t~l~~~Ps~~~~l~~ 221 (369)
T 3hgu_A 167 I--DIDPRWVKRSLSEGDTATVRKYTHHLVDQVQNTLMNQDIRFLVTTPPVLRELLK 221 (369)
T ss_dssp C--CCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCEEEEEECHHHHHHHTT
T ss_pred c--cCChHHHHHhhcccchhhhHHHHHHHHHHHHHHHHhCCCCEEEeCHHHHHHHHh
Confidence 3 33444 66778999999999988766655543
No 45
>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A
Probab=83.68 E-value=16 Score=36.96 Aligned_cols=122 Identities=11% Similarity=0.013 Sum_probs=85.2
Q ss_pred CCCCCceeEEeeccCCCC--ceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhH--HH-HHHHHHhhCCeee
Q 010515 57 NPNNRMLGQREIVDGKAG--KYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW--II-GMEACNALGLHCV 131 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~--~~-~~lA~~~~G~~~v 131 (508)
.|+.+|++... .+.++ .-..+|.+.+...+..... ..++.++|++...+|-.-.+ .. .+++++..|+.++
T Consensus 180 ~~~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 254 (539)
T 1mdb_A 180 KSSDVAFLQLS--GGSTGLSKLIPRTHDDYIYSLKRSVE---VCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVV 254 (539)
T ss_dssp CTTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHH---HHTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CcCceEEEEeC--CCcCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCCEEEEeecccccchhhHHHHHHHHHhCCEEE
Confidence 46777777661 22223 2367899988877665544 34788999988888765333 32 4788889999888
Q ss_pred eccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhc---CCCCCCCccEEEEeCCC
Q 010515 132 PLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKT---FPKTTEHLKTIVSFSKV 184 (508)
Q Consensus 132 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~---~~~~~~~l~~vi~~~~~ 184 (508)
..+ ...++.+...+++.++.+++.....+..+.+. .......++.+++.+..
T Consensus 255 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~~~~gG~~ 309 (539)
T 1mdb_A 255 LSP-SPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAK 309 (539)
T ss_dssp ECS-SSSHHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHCCCCCTTCCEEEEESSC
T ss_pred ECC-CCCHHHHHHHHHHcCCeEEEccHHHHHHHHhCccccCCCccceeEEEEcCCC
Confidence 654 46889999999999999999888766655432 22334778888776654
No 46
>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*
Probab=83.12 E-value=7 Score=39.80 Aligned_cols=122 Identities=12% Similarity=-0.024 Sum_probs=82.9
Q ss_pred CCCceeEEeeccCCCC--ceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhH--HHHHHHHHhhCCeeeecc
Q 010515 59 NNRMLGQREIVDGKAG--KYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW--IIGMEACNALGLHCVPLY 134 (508)
Q Consensus 59 d~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~vpl~ 134 (508)
+.+|++... .+.++ .-..+|.+.+...+......+...++.++|++...+|-.-.+ ...+++++ .|+.++.++
T Consensus 192 ~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~~~~~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l-~G~~~v~~~ 268 (548)
T 2d1s_A 192 EQVALIMNS--SGSTGLPKGVQLTHENIVTRFSHARDPIYGNQVSPGTAVLTVVPFHHGFGMFTTLGYLI-CGFRVVMLT 268 (548)
T ss_dssp TCEEEEECC--SSCSSSCCCEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHH-TTCEEEECC
T ss_pred CCEEEEEeC--CCCCCCCCEEEecHHHHHHHHHHhhchhhccCCCccceEEEeccHHHHHHHHHHHHHHh-cCcEEEEcC
Confidence 667776551 22222 226789999887766554433335788999988887765332 33356667 999888765
Q ss_pred CCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCC---CCCCCccEEEEeCCC
Q 010515 135 DTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP---KTTEHLKTIVSFSKV 184 (508)
Q Consensus 135 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~l~~vi~~~~~ 184 (508)
...++.+...+++.++.+++.....+..+.+... .....++.++..+..
T Consensus 269 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~ 320 (548)
T 2d1s_A 269 -KFDEETFLKTLQDYKCTSVILVPTLFAILNKSELLNKYDLSNLVEIASGGAP 320 (548)
T ss_dssp -CCCHHHHHHHHHHTTEEEEEECHHHHHHHHHCSCGGGSCCTTCCEEEECSSC
T ss_pred -CCCHHHHHHHHHHcCCcEEEecHHHHHHHHhCcccccccccceeEEEEcCcc
Confidence 5788999999999999999998877776655322 123677777775544
No 47
>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*
Probab=78.51 E-value=19 Score=36.53 Aligned_cols=122 Identities=15% Similarity=0.052 Sum_probs=83.5
Q ss_pred CCCCCceeEEeeccCCCC--ceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHH---HHHHHHhhCCeee
Q 010515 57 NPNNRMLGQREIVDGKAG--KYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWII---GMEACNALGLHCV 131 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~---~~lA~~~~G~~~v 131 (508)
.+|.+|++... -+.++ .-..+|.+.+...+..++. ..++.++|++...+|..-.+-. .+++.+..|+.++
T Consensus 189 ~~~d~a~i~~T--SGTTG~PKgv~~sh~~~~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~~~~~~~~~~~l~~G~~~v 263 (544)
T 3o83_A 189 PADEVAFFQLS--GGSTGTPKLIPRTHNDYDYSVRASAE---ICGLNSNTRLLCALPAPHNFMLSSPGALGVLHAGGCVV 263 (544)
T ss_dssp CTTSEEEEEEC--CC--CCCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHSSHHHHHHHTTCEEE
T ss_pred CccceEEEEEC--CCcccCCceEEechHHHHHHHHHHHH---HhCCCCCCeEEEecCcceEeecchHHHHHHHHcCCEEE
Confidence 35677776651 22222 2367899998877766554 3588999999988876543322 4778888899887
Q ss_pred eccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCC---CCCCCccEEEEeCCC
Q 010515 132 PLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP---KTTEHLKTIVSFSKV 184 (508)
Q Consensus 132 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~l~~vi~~~~~ 184 (508)
..+ ...+..+...+++.++.++......+..+.+... .....++.+++.+..
T Consensus 264 ~~~-~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gG~~ 318 (544)
T 3o83_A 264 MAP-NPEPLNCFSIIQRHQVNMASLVPSAVIMWLEKAAQYKDQIQSLKLLQVGGAS 318 (544)
T ss_dssp ECS-SCCHHHHHHHHHHHTCCEEEECHHHHHHHHHHHTTTHHHHTTCCEEEEESSC
T ss_pred ECC-CCCHHHHHHHHHHHCCCEEEechHHHHHHHhchhhccccCCcceEEEEcCCC
Confidence 655 4678888999999999999998876665544322 122577787776654
No 48
>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*
Probab=78.28 E-value=15 Score=36.91 Aligned_cols=123 Identities=10% Similarity=-0.015 Sum_probs=83.6
Q ss_pred CCCCCceeEEeeccCCCCc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchh-HHHHHHHHHhhCCeeeec
Q 010515 57 NPNNRMLGQREIVDGKAGK--YVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE-WIIGMEACNALGLHCVPL 133 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl 133 (508)
.++.+|++... .+.++. -..+|.+.+...+..... ..++.++|++...+|-+-. .+..+++++..|+.++.+
T Consensus 142 ~~~d~a~i~~T--SGTTG~PKgv~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 216 (512)
T 3fce_A 142 KGDENFYIIYT--SGSTGNPKGVQITYNCLVSFTKWAVE---DFNLQTGQVFLNQAPFSFDLSVMDIYPSLVTGGTLWAI 216 (512)
T ss_dssp CTTSEEEEEEE--CC----CEEEEEEHHHHHHHHHHHHH---HTTCCSSCEEEECSCTTSGGGHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCceEEEehHHHHHHHHHHHH---hcCCCCCCEEEEeCCccHhHHHHHHHHHHhCCCEEEEC
Confidence 45666766651 222232 257899888876655443 4588999999998887643 345578888999998877
Q ss_pred cCC--CChHHHHHHHHhcCceEEEEcCCCHHHHhhcC---CCCCCCccEEEEeCCC
Q 010515 134 YDT--LGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF---PKTTEHLKTIVSFSKV 184 (508)
Q Consensus 134 ~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~l~~vi~~~~~ 184 (508)
+.. ..++.+...+++.++.+++.....+..+.... ....+.++.++..+..
T Consensus 217 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~~~~~G~~ 272 (512)
T 3fce_A 217 DKDMIARPKDLFASLEQSDIQVWTSTPSFAEMCLMEASFSESMLPNMKTFLFCGEV 272 (512)
T ss_dssp CHHHHHSHHHHHHHHHHHCCCEEEECHHHHHHHTTSTTCSTTTSTTCCEEEECSSC
T ss_pred CHHHhhCHHHHHHHHHHcCCcEEEecHHHHHHHHhhccccchhCccccEEEEecCc
Confidence 653 46788999999999999998877666554332 2233677877776654
No 49
>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*
Probab=76.93 E-value=12 Score=38.73 Aligned_cols=123 Identities=11% Similarity=0.094 Sum_probs=87.1
Q ss_pred CCCCCceeEEeeccCCCCc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhH-HHHHHHHHhhCCeeeec
Q 010515 57 NPNNRMLGQREIVDGKAGK--YVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW-IIGMEACNALGLHCVPL 133 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl 133 (508)
.||.+|++... -+.++. -..+|.+.+...+.. ....++.++|++....+-+-+. +..++..+..|+.++..
T Consensus 162 ~~~d~a~iiyT--SGSTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 235 (620)
T 4dg8_A 162 AADQIAYINFS--SGTTGRPKAIACTHAGITRLCLG----QSFLAFAPQMRFLVNSPLSFDAATLEIWGALLNGGCCVLN 235 (620)
T ss_dssp CTTSEEEEEEE--BSSSSSCEEEEEEHHHHHHHHSS----CGGGTTCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CCccccCeEEEEchHHHHHHHHH----HHhhCCCCCCEEEEECccCHHHHHHHHHHHHhcCCEEEeC
Confidence 46788877662 233332 257888877554322 2345789999999988876553 34478888889887765
Q ss_pred c-CCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCC
Q 010515 134 Y-DTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK 185 (508)
Q Consensus 134 ~-~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~ 185 (508)
+ ....++.+...+++.++.++......+..+.+........++.+++.+..-
T Consensus 236 ~~~~~~~~~~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~l~~lr~v~~gGe~l 288 (620)
T 4dg8_A 236 DLGPLDPGVLRQLIGERGADSAWLTASLFNTLVDLDPDCLGGLRQLLTGGDIL 288 (620)
T ss_dssp CSSSCCHHHHHHHHHTTCCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSCC
T ss_pred ccccCCHHHHHHHHHHhCCcEEEccHHHHHHHHhcChhhCCCccEEEEEeCcC
Confidence 3 356888999999999999999988877776655445557888888877653
No 50
>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}
Probab=76.86 E-value=12 Score=35.54 Aligned_cols=122 Identities=7% Similarity=-0.055 Sum_probs=79.2
Q ss_pred HhCCCCCceeEEeeccCCCCce--EEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchh-HHHHHHHHHhhCCeee
Q 010515 55 ERNPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE-WIIGMEACNALGLHCV 131 (508)
Q Consensus 55 ~~~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~v 131 (508)
+.+.|.+|++... -+.++.+ ..+|.+.+...+..++. ..++.++|++...+|-.-. .+..++..+..|+..+
T Consensus 33 ~w~~d~~a~Il~T--SGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~pl~h~~gl~~~~~~l~~g~~~~ 107 (358)
T 4gs5_A 33 KWLGGAREFVLHT--SGSTGMPKPITVTRAQLAASAAMTGK---ALSLGPGTRALVCLNVGYIAGLMMLVRGMELDWELT 107 (358)
T ss_dssp HHHHTCSEEEEEE--ECTTSSEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEE
T ss_pred ccCCCCCEEEEEC--CcccccCcEEEEeHHHHHHHHHHHHH---HhCCCCCCEEEEECChHHHHHHHHHHHHHHhCcEEE
Confidence 4456778877662 2333433 67899998877666554 4588999999988876533 3444566677788777
Q ss_pred eccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCC--CCCCccEEEEeCCC
Q 010515 132 PLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPK--TTEHLKTIVSFSKV 184 (508)
Q Consensus 132 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~--~~~~l~~vi~~~~~ 184 (508)
..++.... ...+++.++.++......+..+.+.... ....++.+++.+..
T Consensus 108 ~~~~~~~~---~~~i~~~~~t~~~~~P~~l~~ll~~~~~~~~l~~lr~v~~gG~~ 159 (358)
T 4gs5_A 108 VTEPTANP---LAGLDHADFDFVAMVPMQLQSILENSATSGQVDRLGKVLLGGAP 159 (358)
T ss_dssp EECCCSCT---TTTCSSCCCSEEEECHHHHHHHHHCTTTGGGGGGGCSEEECSSC
T ss_pred ecCccccH---HHHHHHhCCeEEEcChHHHHHhhccccccccCCcceEEEEcccC
Confidence 66654332 3457788899998887766666543322 23667777776544
No 51
>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*
Probab=76.77 E-value=24 Score=35.34 Aligned_cols=123 Identities=10% Similarity=-0.023 Sum_probs=84.9
Q ss_pred CCCCCceeEEeeccCCCCc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhH-HHHHHHHHhhCCeeeec
Q 010515 57 NPNNRMLGQREIVDGKAGK--YVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW-IIGMEACNALGLHCVPL 133 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl 133 (508)
.++.+|++... -+.++. -..+|.+.+...+..++. ..++.++|++...+|-+... +..++.++..|+.++.+
T Consensus 141 ~~~~~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~~~~ 215 (511)
T 3e7w_A 141 KEHETFYIIYT--SGSTGNPKGVQISAANLQSFTDWICA---DFPVSGGKIFLNQAPFSFDLSVMDLYPCLQSGGTLHCV 215 (511)
T ss_dssp CTTSEEEEEEE--CCTTSSCEEEEEEHHHHHHHHHHHHH---HSTTTTTCEEEECSCTTSTHHHHHHHHHHHTTCEEEEC
T ss_pred CCCCeEEEEEC--CCCCCCCCEEEEcHHHHHHHHHHHHH---hcCCCccceEEEeCCccHHHHHHHHHHHHhcCCEEEEc
Confidence 45667776652 233332 367899888776655543 45788999999888876443 44578889999988876
Q ss_pred cCC--CChHHHHHHHHhcCceEEEEcCCCHHHHhhcC---CCCCCCccEEEEeCCC
Q 010515 134 YDT--LGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF---PKTTEHLKTIVSFSKV 184 (508)
Q Consensus 134 ~~~--~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~l~~vi~~~~~ 184 (508)
+.. ..++.+...+++.++.+++.....+..+.... ......++.++..+..
T Consensus 216 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~l~~~~~~G~~ 271 (511)
T 3e7w_A 216 TKDAVNKPKVLFEELKKSGLNVWTSTPSFVQMCLMDPGFSQDLLPHADTFMFCGEV 271 (511)
T ss_dssp CHHHHHSHHHHHHHHHHHCCSEEEECHHHHHHHHTSTTCSTTTCTTCCEEEECSSC
T ss_pred ChhhhcCHHHHHHHHHHcCCcEEEecHHHHHHHHhccccccccCCcccEEEEecCC
Confidence 553 46788889999999999999887766655432 2233677777776644
No 52
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A
Probab=76.64 E-value=20 Score=35.93 Aligned_cols=121 Identities=12% Similarity=0.017 Sum_probs=80.4
Q ss_pred CCCCCceeEEeeccCCCC--ceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHH--HHHHHHHhhCCeeee
Q 010515 57 NPNNRMLGQREIVDGKAG--KYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI--IGMEACNALGLHCVP 132 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~--~~~lA~~~~G~~~vp 132 (508)
.|+.+|++... -+.++ .-..+|.+.+...+..++.. .++.++|++...+|-.-..- ..+++++ .|+.++.
T Consensus 168 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~---~~~~~~d~~l~~~p~~~~~~~~~~~~~~~-~G~~~v~ 241 (517)
T 3r44_A 168 GGDDNLFIMYT--SGTTGHPKGVVHTHESVHSAASSWAST---IDVRYRDRLLLPLPMFHVAALTTVIFSAM-RGVTLIS 241 (517)
T ss_dssp CTTSEEEEEEE--CC---CCEEEEEEHHHHHHHHHHHHHH---SCCCTTCEEEECSCTTSHHHHHHHHHHHH-HTCEEEE
T ss_pred CCCCeEEEEEC--CcccccCceeeeeHHHHHHHHHHHHHh---cCCCCCCEEEEeCchHHHHHHHHHHHHHh-cCeEEEE
Confidence 35666766551 22223 23678999988777665544 48899999998888764432 2244555 8888776
Q ss_pred ccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcC---CCCCCCccEEEEeCCC
Q 010515 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF---PKTTEHLKTIVSFSKV 184 (508)
Q Consensus 133 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~---~~~~~~l~~vi~~~~~ 184 (508)
. +...++.+...+++.++.++......+..+.+.. ....+.++.++..+..
T Consensus 242 ~-~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~lr~i~~gGe~ 295 (517)
T 3r44_A 242 M-PQFDATKVWSLIVEERVCIGGAVPAILNFMRQVPEFAELDAPDFRYFITGGAP 295 (517)
T ss_dssp C-SSCCHHHHHHHHHHTTCCEEEECHHHHHHHHHSHHHHHCCCTTCCEEEECSSC
T ss_pred e-CCCCHHHHHHHHHHhCCeEEEeHHHHHHHHHhCcccccCCCCcccEEEECCCC
Confidence 6 4578899999999999999998887665554321 1223677777776654
No 53
>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A
Probab=76.53 E-value=14 Score=37.56 Aligned_cols=124 Identities=11% Similarity=-0.050 Sum_probs=82.6
Q ss_pred CCCCceeEEeeccCCCC--ceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchh-HHHHHHHHHhhCCeeeecc
Q 010515 58 PNNRMLGQREIVDGKAG--KYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE-WIIGMEACNALGLHCVPLY 134 (508)
Q Consensus 58 pd~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl~ 134 (508)
++.+|++... .+.++ .-..+|.+.+...+......+...++.++|++...+|-.-. .+...++++..|+.++.++
T Consensus 189 ~~d~a~i~~T--SGTTG~PKgV~~th~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~l~~G~~~~~~~ 266 (550)
T 3rix_A 189 DKTIALIMNS--SGSTGLPKGVALPHRTACVRFSHARDPIFGNQIIPDTAILSVVPFHHGFGMFTTLGYLICGFRVVLMY 266 (550)
T ss_dssp TTSEEEEEEC-------CCCEEEEEHHHHHHHHHHHTCTTTSCCCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEECS
T ss_pred CCCEEEEEEC--CCcccCcchhhhhHHHHHHHHHHhhhhhccccCCCCcEEEEechHHHHHHHHHHHHHHHcCCEEEEeC
Confidence 3556666551 22222 22678998887765554443333578899998888876633 2445677788899888764
Q ss_pred CCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCC---CCCCCccEEEEeCCC
Q 010515 135 DTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFP---KTTEHLKTIVSFSKV 184 (508)
Q Consensus 135 ~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~---~~~~~l~~vi~~~~~ 184 (508)
...++.+...+++.++.+++.....+..+.+... .....++.++..+..
T Consensus 267 -~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~l~~lr~i~~gG~~ 318 (550)
T 3rix_A 267 -RFEEELFLRSLQDYKIQSALLVPTLFSFFAKSTLIDKYDLSNLHEIASGGAP 318 (550)
T ss_dssp -SCCHHHHHHHHHHTTCSEEEECHHHHHHHHHCCGGGGSCCTTCCEEEECSSC
T ss_pred -CCCHHHHHHHHHHcCCeEEEeCcHHHHHHHhCccccccCcccccEEEEecCC
Confidence 5788999999999999999998877766654321 223678888776654
No 54
>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0
Probab=74.53 E-value=47 Score=33.08 Aligned_cols=121 Identities=9% Similarity=-0.035 Sum_probs=78.6
Q ss_pred CCCCCceeEEeeccCCCCc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhH-HHHHHHHHhhCCeeeec
Q 010515 57 NPNNRMLGQREIVDGKAGK--YVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW-IIGMEACNALGLHCVPL 133 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl 133 (508)
.++.+|++... -+.++. -..+|.+.+...+..+.. ..++.++|++...+|-.-.+ +...+.+...|+..+.+
T Consensus 158 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~~~~g~~~~~~~~~~~g~~~~~ 232 (509)
T 3ivr_A 158 GAADGFVIIHT--AAVGGRPRGALISQGNLLIAQSSLVD---AWRLTEADVNLGMLPLFHVTGLGLMLTLQQAGGASVIA 232 (509)
T ss_dssp CTTSEEEEEEE--EC--CCEEEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHHHHHHHHHTCEEEEC
T ss_pred CccccEEEEeC--CCCCCCCcEEEEehHHHHHHHHHHHH---hhCCCCCcEEEEeCCCcchhHHHHHHHHHHhCCcEEEe
Confidence 46677776552 233332 257899988877666554 45889999999888865332 23334434444444434
Q ss_pred cCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcC-CCCCCCccEEEEeCC
Q 010515 134 YDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF-PKTTEHLKTIVSFSK 183 (508)
Q Consensus 134 ~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-~~~~~~l~~vi~~~~ 183 (508)
. ...++.+...+++.++.+++.....+..+.+.. ......++.++..+.
T Consensus 233 ~-~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~l~~lr~~~~~g~ 282 (509)
T 3ivr_A 233 A-KFDPAQAARDIEAHKVTVMAEFAPMLGNILDQAAPAQLASLRAVTGLDT 282 (509)
T ss_dssp S-SCCHHHHHHHHHHHTCCEEEEETTHHHHHHHHCCGGGGTTCCEEEEECC
T ss_pred c-ccCHHHHHHHHHHHCCcEEEecHHHHHHHHhcccccchhhhheecccCC
Confidence 3 678999999999999999999988877765543 222356666665544
No 55
>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*
Probab=74.34 E-value=24 Score=36.03 Aligned_cols=123 Identities=10% Similarity=-0.085 Sum_probs=85.0
Q ss_pred CCCCCceeEEeeccCCCC--ceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHH--HHHHHHHhhCCeeee
Q 010515 57 NPNNRMLGQREIVDGKAG--KYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI--IGMEACNALGLHCVP 132 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~--~~~lA~~~~G~~~vp 132 (508)
.|+.+|++... -+.++ .-..+|.+.+...+..++. ..++.++|++...+|..-.+- ..+++.+..|+.++.
T Consensus 165 ~~~d~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~~~~---~~~~~~~d~~l~~~p~~h~~g~~~~~~~~l~~G~~~v~ 239 (590)
T 3kxw_A 165 KSNDIAFLQYT--SGSTMHPKGVMVSHHNLLDNLNKIFT---SFHMNDETIIFSWLPPHHDMGLIGCILTPIYGGIQAIM 239 (590)
T ss_dssp CTTSEEEEEEC--SSCSSSCCEEEEEHHHHHHHHHHHHH---HTTCCTTCEEEECSCTTSHHHHHTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--cCCCCCceEEEeeHHHHHHHHHHHHH---hhCCCCcCeEEEecCCCcchhhHHHHHHHHhcCceEEE
Confidence 46778877661 22223 2367899999887766554 458899999999888775443 337888899999887
Q ss_pred ccCCC---ChHHHHHHHHhcCceEEEEcCCCHHHHhhcC------CCCCCCccEEEEeCCC
Q 010515 133 LYDTL---GAGAVEFIICHSGVSIAFVEEKKIPEMLKTF------PKTTEHLKTIVSFSKV 184 (508)
Q Consensus 133 l~~~~---~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~------~~~~~~l~~vi~~~~~ 184 (508)
+++.. .+..+...+++.++.++......+..+.+.. ...+..++.++..+..
T Consensus 240 ~~~~~~~~~~~~~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~~~~~l~~lr~~~~gg~~ 300 (590)
T 3kxw_A 240 MSPFSFLQNPLSWLKHITKYKATISGSPNFAYDYCVKRIREEKKEGLDLSSWVTAFNGAEP 300 (590)
T ss_dssp CCHHHHHHCTHHHHHHHHHHTCSEEEECTHHHHHHHHHCCGGGGTTCCCTTCCEEEECSSC
T ss_pred eCHHHHHHCHHHHHHHHHHhCCeeecCChhHHHHHHHHhhhhhccCCCchhhHHHhhCCCC
Confidence 76532 5778889999999999888766555544321 2233677787776654
No 56
>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A
Probab=73.14 E-value=11 Score=38.57 Aligned_cols=123 Identities=10% Similarity=0.098 Sum_probs=86.3
Q ss_pred CCCCCceeEEeeccCCCCc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchh-HHHHHHHHHhhCCeeeec
Q 010515 57 NPNNRMLGQREIVDGKAGK--YVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE-WIIGMEACNALGLHCVPL 133 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~-~~~~~lA~~~~G~~~vpl 133 (508)
.|+.+|++... -+.++. -..+|.+.+...... ....++.++|++...+|-+.+ ....+++.+..|+.++..
T Consensus 212 ~~~d~a~i~~T--SGTTG~PKgV~~th~~l~~~~~~----~~~~~~~~~d~~l~~~p~~~~~~~~~~~~~l~~G~~~v~~ 285 (570)
T 4gr5_A 212 GPEDVACVMFT--SGSTGRPKGVMSPHRALTGTYLG----QDYAGFGPDEVFLQCSPVSWDAFGLELFGALLFGARCVLQ 285 (570)
T ss_dssp CTTSEEEEECC--SSCCSSCCCEEEEHHHHHHHHSS----CCSSCCSTTCEEEECSCTTSSTHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEEC--CcCCCCCeEEEEecHHHHHHHHh----hhhcCCCCCCEEEEecCccHHHHHHHHHHHHhcCCEEEEc
Confidence 46777776651 222222 257888887543221 223578899999988887533 445677888899987776
Q ss_pred cC-CCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCC
Q 010515 134 YD-TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK 185 (508)
Q Consensus 134 ~~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~ 185 (508)
+. ...+..+...+++.++.++......+..+.+........++.++..+..-
T Consensus 286 ~~~~~~~~~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~lr~~~~gG~~l 338 (570)
T 4gr5_A 286 SGQNPDPLEIGELVARHGVTMLQLSASLFNFLVDEVPEAFEGVRYAITGGEPA 338 (570)
T ss_dssp SSSSCCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCGGGGTTCSEEEEESSCC
T ss_pred CCccCCHHHHHHHHHHcCCcEEEecHHHHHHHHhhchhhCCCceEEEEecccC
Confidence 54 56788999999999999999998877777665555567888888876653
No 57
>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}
Probab=72.73 E-value=55 Score=33.56 Aligned_cols=123 Identities=15% Similarity=0.061 Sum_probs=84.3
Q ss_pred CCCCCceeEEeeccCCCC--ceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCch--hHHH-HHHHHHhhCCeee
Q 010515 57 NPNNRMLGQREIVDGKAG--KYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCP--EWII-GMEACNALGLHCV 131 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~--~~~~-~~lA~~~~G~~~v 131 (508)
.||.+|++... -+.++ .-..+|.+.+...+...... .++.++|++...++... +... .+++++..|+.++
T Consensus 182 ~~~~~a~ii~T--SGSTG~PKgV~~th~~~~~~~~~~~~~---~~~~~~~~~l~~~p~~~~~~~~~~~~~~~l~~G~~~v 256 (617)
T 3rg2_A 182 PADEVAYFQLS--GGTTGTPKLIPRTHNDYYYSVRRSVEI---CQFTQQTRYLCAIPAAHNYAMSSPGSLGVFLAGGTVV 256 (617)
T ss_dssp CTTSEEEEEEC--CCSSSSCCEEEEEHHHHHHHHHHHHHH---HTCCTTCEEEECSCTTSHHHHHSSHHHHHHHHTCEEE
T ss_pred CCCCeEEEEEC--CCcCCCCCEeehhHHHHHHHHHHHHHh---cCCCCcceEEEeccchhhhhhhHHHHHHHHHcCCEEE
Confidence 35677776651 22223 23678999888776665543 47889999998888543 3332 4788888899888
Q ss_pred eccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcC-----CCCCCCccEEEEeCCCC
Q 010515 132 PLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF-----PKTTEHLKTIVSFSKVK 185 (508)
Q Consensus 132 pl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~l~~vi~~~~~~ 185 (508)
..+. .....+...+++.++.++......+..+.+.. ......++.+++.+..-
T Consensus 257 ~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~i~~gGe~l 314 (617)
T 3rg2_A 257 LAAD-PSATLCFPLIEKHQVNVTALVPPAVSLWLQALIEGESRAQLASLKLLQVGGARL 314 (617)
T ss_dssp ECSS-CCHHHHHHHHHHTTCCEEEECHHHHHHHHHHHHTTCCTTTTTTCCEEEEESSCC
T ss_pred EeCC-CCHHHHHHHHHHhCCcEEEcchHHHHHHHHhhhcccccccCCCccEEEEcCCcC
Confidence 6654 57788889999999999999887665554321 11346788888776553
No 58
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Probab=72.71 E-value=16 Score=36.57 Aligned_cols=122 Identities=11% Similarity=0.030 Sum_probs=83.2
Q ss_pred CCCCCceeEEeeccCCCC--ceEEeeHHHHHHHHHHHHHHHHHcCC--CCCcEEEEEcCCchhH--HHHHHHHHhhCCee
Q 010515 57 NPNNRMLGQREIVDGKAG--KYVWKTYKEVYDLVIKVVNAIRTCGV--EERGKCGIYGVNCPEW--IIGMEACNALGLHC 130 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~--~~~~~Ty~el~~~~~~lA~~L~~~gv--~~gd~V~i~~~n~~~~--~~~~lA~~~~G~~~ 130 (508)
.|+.+|++... .+.++ .-..+|.+.+...+..++. ..++ .++|++...+|-.-.. ...+++++..|+.+
T Consensus 151 ~~~~~a~i~~T--SGTTG~PKgV~~sh~~~~~~~~~~~~---~~~~~~~~~~~~l~~~p~~~~~g~~~~~~~~l~~G~~~ 225 (504)
T 1t5h_X 151 EPAQPAFIFYT--SGTTGLPKAAIIPQRAAESRVLFMST---QVGLRHGRHNVVLGLMPLYHVVGFFAVLVAALALDGTY 225 (504)
T ss_dssp CTTSEEEEEEC--CC---CCCEEEEEGGGHHHHHHHHHH---TTCCCSSTTCEEEECSCTTSHHHHTTTHHHHHHTTCEE
T ss_pred CCCCeEEEEeC--CCCCCCCCEEEecHHHHHHHHHHHHH---hhCCCCCCCceEEeecchhhcchHHHHHHHHHHcCceE
Confidence 56778877661 22223 2257888888776655443 3467 7888888887765433 23578888899988
Q ss_pred eeccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhhcC-----CCCCCCccEEEEeCCC
Q 010515 131 VPLYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF-----PKTTEHLKTIVSFSKV 184 (508)
Q Consensus 131 vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~-----~~~~~~l~~vi~~~~~ 184 (508)
+..+. ..+..+...+++.++.+++.....+..+.+.. ......++.++..+..
T Consensus 226 v~~~~-~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~l~~lr~~~~gG~~ 283 (504)
T 1t5h_X 226 VVVEE-FRPVDALQLVQQEQVTSLFATPTHLDALAAAAAHAGSSLKLDSLRHVTFAGAT 283 (504)
T ss_dssp EECSS-CCHHHHHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCCCCCTTCCEEEECCTT
T ss_pred EeCCC-CCHHHHHHHHHHhCCeEEEeChHHHHHHHhhhccccccccCccccEEEEcCCc
Confidence 87654 67889999999999999999887776665432 1234678888776554
No 59
>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*
Probab=71.52 E-value=37 Score=34.55 Aligned_cols=124 Identities=10% Similarity=-0.035 Sum_probs=81.7
Q ss_pred CCCCCceeEEeeccCCCCc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHH--HHHHHHHhhCCeeee
Q 010515 57 NPNNRMLGQREIVDGKAGK--YVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI--IGMEACNALGLHCVP 132 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~--~~~lA~~~~G~~~vp 132 (508)
.++.+|++... -+.++. -..+|.+ +........ ....++.++|++....+.+-..- ..+++.+..|+..+.
T Consensus 204 ~~~d~a~i~~T--SGTTG~PKgV~~sh~-~~~~~~~~~--~~~~~~~~~d~~~~~~p~~~~~~~~~~~~~~l~~G~~~~~ 278 (570)
T 3c5e_A 204 GSQEASAIYFT--SGTSGLPKMAEHSYS-SLGLKAKMD--AGWTGLQASDIMWTISDTGWILNILCSLMEPWALGACTFV 278 (570)
T ss_dssp BTTSEEEEEEC--CCSSSSCCEEEEEHH-HHHHHHHHH--TTTTSCCTTCEEEECCCTTSHHHHHHTTHHHHHHTCEEEE
T ss_pred CCCCcEEEEEC--CCCCCCCCEEEechH-HHHhhhhhh--hhhcCCCCCceEEEcCchHHHHHHHHHHHHHHHhCceEEE
Confidence 35667776651 222232 2567888 443211111 14468899999888887764433 346788888998776
Q ss_pred ccC-CCChHHHHHHHHhcCceEEEEcCCCHHHHhhcC--CCCCCCccEEEEeCCCC
Q 010515 133 LYD-TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTF--PKTTEHLKTIVSFSKVK 185 (508)
Q Consensus 133 l~~-~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~--~~~~~~l~~vi~~~~~~ 185 (508)
.+. .+.++.+...+++.++.+++.....+..+.+.. ......++.++..+..-
T Consensus 279 ~~~~~~~~~~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~lr~i~~gGe~l 334 (570)
T 3c5e_A 279 HLLPKFDPLVILKTLSSYPIKSMMGAPIVYRMLLQQDLSSYKFPHLQNCVTVGESL 334 (570)
T ss_dssp ECCSSCCHHHHHHHHHHSCCCEEEECHHHHHHHHTSCTTTCCCTTCCEEEEESSCC
T ss_pred ecCCCCCHHHHHHHHHHhCCeEEeccHHHHHHHHhccccccccccceEEEEcCCcC
Confidence 653 678899999999999999999887777666532 11236788887766543
No 60
>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}
Probab=70.67 E-value=41 Score=33.91 Aligned_cols=106 Identities=7% Similarity=-0.058 Sum_probs=77.5
Q ss_pred CCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEE
Q 010515 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGF 298 (508)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~ 298 (508)
.++.+|++....+..+ -..-.+|...+...+..+...+. ..++.++|++...++-+ ..+.. ++.++..|+..+.
T Consensus 32 ~p~~~A~~~~~~~~~~-~~~~~~Ty~el~~~~~~lA~~L~--~~Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~vp 106 (549)
T 3g7s_A 32 FGEKTAIISAEPKFPS-EFPESMNFLEICEVTKKLASGIS--RKGVRKGEHVGVCIPNS--IDYVMTIYALWRVAATPVP 106 (549)
T ss_dssp HTTSEEEEEESSCCCC-SSCSEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEeCCCcccc-cccceeeHHHHHHHHHHHHHHHH--HcCCCCCCEEEEECCCC--HHHHHHHHHHHHhCCEEEc
Confidence 4677777765322111 11246899999988888877553 33678999999988876 44544 6667889999888
Q ss_pred ecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHH
Q 010515 299 WRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYS 330 (508)
Q Consensus 299 ~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~ 330 (508)
.+. ..+.+...++..+++.++..+.....+..
T Consensus 107 l~~~~~~~~l~~il~~~~~~~~i~~~~~~~~~~~ 140 (549)
T 3g7s_A 107 INPMYKSFELEHILNDSEATTLVVHSMLYENFKP 140 (549)
T ss_dssp CCTTCCHHHHHHHHHHTTCSEEEEEGGGHHHHHH
T ss_pred cCCCCCHHHHHHHHHhcCCCEEEEChHHHHHHHH
Confidence 865 88999999999999999998887666543
No 61
>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*
Probab=70.05 E-value=33 Score=34.49 Aligned_cols=100 Identities=13% Similarity=0.098 Sum_probs=75.9
Q ss_pred CCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEE
Q 010515 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGF 298 (508)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~ 298 (508)
.++.++++.. .+| -.+|+..+...+..+...+.. .++.++|++...++-+ ..+.. ++.++..|+..+.
T Consensus 35 ~p~~~a~~~~---~~~----~~~Ty~el~~~~~~lA~~L~~--~Gv~~gd~V~i~~~~~--~~~~~~~la~~~~Gav~vp 103 (536)
T 3ni2_A 35 HSSKPCLING---ANG----DVYTYADVELTARRVASGLNK--IGIQQGDVIMLFLPSS--PEFVLAFLGASHRGAIITA 103 (536)
T ss_dssp STTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHHH--TTCCTTCEEEEECCSS--HHHHHHHHHHHHHTCEEEE
T ss_pred CCCceEEEEC---CCC----CEEEHHHHHHHHHHHHHHHHH--cCCCCCCEEEEEcCCc--HHHHHHHHHHHHhCCEEec
Confidence 4677776642 222 458999998888888775533 4778999999888876 44444 6667889999888
Q ss_pred ecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHHH
Q 010515 299 WRG--DVKLLLEDIGELKPTIFCAVPRVLDRIYS 330 (508)
Q Consensus 299 ~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~~ 330 (508)
.+. ..+.+...++..++.++++.+.....+..
T Consensus 104 l~~~~~~~~l~~~l~~~~~~~~i~~~~~~~~~~~ 137 (536)
T 3ni2_A 104 ANPFSTPAELAKHAKASRAKLLITQACYYEKVKD 137 (536)
T ss_dssp CCTTCCHHHHHHHHHHHTEEEEEECGGGTHHHHH
T ss_pred cCCCCCHHHHHHHHHhcCCEEEEEChHHHHHHHH
Confidence 765 88999999999999999998877666544
No 62
>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*
Probab=69.10 E-value=49 Score=33.33 Aligned_cols=101 Identities=9% Similarity=-0.074 Sum_probs=75.0
Q ss_pred CCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEE
Q 010515 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGF 298 (508)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~ 298 (508)
.++.++++....+ ....+|...+...+..+...+. ..++.++|++...++-+ ..+.. .+.++..|+..+.
T Consensus 31 ~p~~~a~~~~~~~-----~~~~~Ty~el~~~~~~lA~~L~--~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~Gav~vp 101 (541)
T 1v25_A 31 FGRKEVVSRLHTG-----EVHRTTYAEVYQRARRLMGGLR--ALGVGVGDRVATLGFNH--FRHLEAYFAVPGMGAVLHT 101 (541)
T ss_dssp STTCEEEEECTTS-----CEEEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEEecCC-----CCceecHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEcCCc--HHHHHHHHHHHhcCcEEEe
Confidence 3566676543211 2457899999888888777553 34678899999888866 44544 6666889999888
Q ss_pred ecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHH
Q 010515 299 WRG--DVKLLLEDIGELKPTIFCAVPRVLDRIY 329 (508)
Q Consensus 299 ~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~ 329 (508)
.+. ..+.+...++..++.++++.+.....+.
T Consensus 102 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 134 (541)
T 1v25_A 102 ANPRLSPKEIAYILNHAEDKVLLFDPNLLPLVE 134 (541)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECGGGHHHHH
T ss_pred cCcccCHHHHHHHHHhCCCcEEEEChhHHHHHH
Confidence 865 7889999999999999999887765543
No 63
>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A
Probab=65.81 E-value=61 Score=31.80 Aligned_cols=106 Identities=9% Similarity=0.005 Sum_probs=76.2
Q ss_pred CCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEE
Q 010515 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGF 298 (508)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~ 298 (508)
.|+.+|++.........-....+|.+.+...+..+...+... +. ++|++...++-. ..+.. .+.++..|+..+.
T Consensus 37 ~pd~~Al~~~~~~~~~~g~~~~~Ty~el~~~~~~lA~~L~~~--g~-~gd~V~i~~~n~--~e~~~~~lA~~~~G~v~vp 111 (480)
T 3t5a_A 37 QPHDPAFTFMDYEQDWDGVAITLTWSQLYRRTLNVAQELSRC--GS-TGDRVVISAPQG--LEYVVAFLGALQAGRIAVP 111 (480)
T ss_dssp STTSEEEEEEETTTCTTCEEEEEEHHHHHHHHHHHHHHHTTS--SC-TTCEEEEECCSS--HHHHHHHHHHHHTTCEEEE
T ss_pred CCCCceEEEecccCCCCCceEEEcHHHHHHHHHHHHHHHHhc--CC-CCCEEEEEcCCc--HHHHHHHHHHHHhCcEEEe
Confidence 467788776543221112346799999999998888766332 34 788888888766 44544 6666889999887
Q ss_pred ecC-----CHHHHHHHhhhcCCeEEEeCcHHHHHHHH
Q 010515 299 WRG-----DVKLLLEDIGELKPTIFCAVPRVLDRIYS 330 (508)
Q Consensus 299 ~~~-----~~~~~~~~i~~~~~t~l~~~P~~l~~l~~ 330 (508)
.+. ..+.+...++..++..++..+.....+.+
T Consensus 112 l~~~~~~~~~~~l~~il~~~~~~~vi~~~~~~~~~~~ 148 (480)
T 3t5a_A 112 LSVPQGGVTDERSDSVLSDSSPVAILTTSSAVDDVVQ 148 (480)
T ss_dssp ECSCCSCTTCCHHHHHHHHHCCSEEEECTTTHHHHHH
T ss_pred eCCCCccchHHHHHHHHHhCCCCEEEeChhHHHHHHH
Confidence 753 46788899999999999998887766544
No 64
>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1
Probab=61.85 E-value=63 Score=33.56 Aligned_cols=99 Identities=14% Similarity=0.180 Sum_probs=73.4
Q ss_pred CCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEE
Q 010515 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGF 298 (508)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~ 298 (508)
.++.+|++... ..+| ....+|.+.+...+..+...+. ...+..++|++...+|.. ..+.. ++.++..|+..+.
T Consensus 95 ~pd~~Al~~~~-~~~~--~~~~~TY~eL~~~v~~lA~~L~-~~~Gv~~Gd~V~i~~~~~--~e~v~a~lA~~~~Gav~vp 168 (663)
T 1ry2_A 95 TPNKKAIIFEG-DEPG--QGYSITYKELLEEVCQVAQVLT-YSMGVRKGDTVAVYMPMV--PEAIITLLAISRIGAIHSV 168 (663)
T ss_dssp CTTSEEEEEEC-SSTT--CCEEEEHHHHHHHHHHHHHHHH-HTSCCCTTCEEEECCCSS--HHHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEEEc-CCCC--ceEEEEHHHHHHHHHHHHHHHH-HhcCCCCCCEEEEEcCCC--HHHHHHHHHHHHcCCEEEe
Confidence 46777777542 2222 2356999999998888877552 134778999999999887 44444 6677889998888
Q ss_pred ecC--CHHHHHHHhhhcCCeEEEeCcHH
Q 010515 299 WRG--DVKLLLEDIGELKPTIFCAVPRV 324 (508)
Q Consensus 299 ~~~--~~~~~~~~i~~~~~t~l~~~P~~ 324 (508)
... .++.+...++..++.++++....
T Consensus 169 l~~~~~~~~l~~~l~~~~~~~li~~~~~ 196 (663)
T 1ry2_A 169 VFAGFSSNSLRDRINDGDSKVVITTDES 196 (663)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEEESBC
T ss_pred eCCCCCHHHHHHHHHhcCCeEEEEcccc
Confidence 765 88999999999999999986543
No 65
>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1
Probab=61.63 E-value=64 Score=32.67 Aligned_cols=94 Identities=5% Similarity=0.047 Sum_probs=71.2
Q ss_pred CCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEE
Q 010515 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGF 298 (508)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~ 298 (508)
.++.+|++. . .-.+|.+.+...+..+...+. ..++.++|++...++-+ ..+.. .+.++..|+..+.
T Consensus 52 ~p~~~Al~~-~--------~~~~Ty~eL~~~~~~lA~~L~--~~Gv~~gd~V~i~~~n~--~e~~~~~lA~~~~Gav~vp 118 (563)
T 1amu_A 52 RPNNVAIVC-E--------NEQLTYHELNVKANQLARIFI--EKGIGKDTLVGIMMEKS--IDLFIGILAVLKAGGAYVP 118 (563)
T ss_dssp CTTSEEEEE-T--------TEEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEE
T ss_pred CCCCeEEEe-C--------CceecHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEeCCC--HHHHHHHHHHHHhCCEEEE
Confidence 456777663 1 246899999888888776553 33678899999888876 44544 6666889999888
Q ss_pred ecC--CHHHHHHHhhhcCCeEEEeCcHHHH
Q 010515 299 WRG--DVKLLLEDIGELKPTIFCAVPRVLD 326 (508)
Q Consensus 299 ~~~--~~~~~~~~i~~~~~t~l~~~P~~l~ 326 (508)
.+. ..+.+...++..++..++..+....
T Consensus 119 l~~~~~~~~l~~il~~~~~~~li~~~~~~~ 148 (563)
T 1amu_A 119 IDIEYPKERIQYILDDSQARMLLTQKHLVH 148 (563)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEECGGGHH
T ss_pred eCCCCcHHHHHHHHHhcCCCEEEEcCchhh
Confidence 875 7889999999999999999876544
No 66
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP dependent enzyme, serine ACET transferase; HET: LLP; 1.68A {Leishmania donovani} PDB: 3spx_A* 3t4p_A* 4air_A*
Probab=59.41 E-value=46 Score=31.25 Aligned_cols=65 Identities=5% Similarity=-0.089 Sum_probs=48.0
Q ss_pred HHHcC-CCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCC
Q 010515 95 IRTCG-VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (508)
Q Consensus 95 L~~~g-v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 159 (508)
..+.| +++|+.|.+-...+-.-..+.++|...|.-++.+-|...+.+-...++..++++++++..
T Consensus 62 a~~~g~l~~g~~vvv~aSsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 127 (334)
T 3tbh_A 62 AEKEGKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTPAA 127 (334)
T ss_dssp HHHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCeEEEEeCCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 34555 488988655555677777888888888987766656555566677889999999999754
No 67
>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}
Probab=56.54 E-value=64 Score=32.85 Aligned_cols=96 Identities=8% Similarity=0.036 Sum_probs=73.2
Q ss_pred CCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEE
Q 010515 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGF 298 (508)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~ 298 (508)
.|+.+|++..... | ....+|...+......+...+. ..++.++|++...++-. ..+.. ++.++..|+..+.
T Consensus 69 ~pd~~Al~~~~~~--g--~~~~~Ty~eL~~~~~~~A~~L~--~~Gv~~Gd~V~l~~~~~--~e~~~~~lA~~~~Gav~vp 140 (580)
T 3etc_A 69 SPEKLAMIWCDDY--G--NEKIFTFKDLKYYSDKAANFFV--KHGIGKGDYVMLTLKSR--YDFWYCMLGLHKLGAIAVP 140 (580)
T ss_dssp CTTCEEEEEEESS--S--CEEEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECTTC--THHHHHHHHHHHHTCEEEE
T ss_pred CCCCEEEEEEcCC--C--CEeEEeHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEcCCC--HHHHHHHHHHHhCCEEEEe
Confidence 5678888765432 2 2467899999988888877653 34788999999998876 34544 6666889999888
Q ss_pred ecC--CHHHHHHHhhhcCCeEEEeCcH
Q 010515 299 WRG--DVKLLLEDIGELKPTIFCAVPR 323 (508)
Q Consensus 299 ~~~--~~~~~~~~i~~~~~t~l~~~P~ 323 (508)
.+. .++.+...++..++..+++.+.
T Consensus 141 l~~~~~~~~l~~~l~~~~~~~ii~~~~ 167 (580)
T 3etc_A 141 ATHMLKTRDIVYRIEKAGLKMIVCIAE 167 (580)
T ss_dssp CCTTCCHHHHHHHHHHHTCCEEEEESS
T ss_pred CCccCCHHHHHHHHHhcCCCEEEEecc
Confidence 765 8899999999999999988654
No 68
>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*
Probab=56.40 E-value=53 Score=32.65 Aligned_cols=84 Identities=17% Similarity=0.101 Sum_probs=66.6
Q ss_pred EeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhcCCeE
Q 010515 241 MVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPTI 317 (508)
Q Consensus 241 ~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t~ 317 (508)
.+|.+.+...+..+...+. ..++.++|++...++-+ ..+.. .+.++..|+..+..+. ..+.+...++..++.+
T Consensus 28 ~~Ty~eL~~~~~~lA~~L~--~~Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~Ga~~vpl~~~~~~~~l~~il~~~~~~~ 103 (503)
T 4fuq_A 28 KISYAELVARAGRVANVLV--ARGLQVGDRVAAQTEKS--VEALVLYLATVRAGGVYLPLNTAYTLHELDYFITDAEPKI 103 (503)
T ss_dssp EEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSC--HHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHHCCSE
T ss_pred EEEHHHHHHHHHHHHHHHH--HcCCCCCCEEEEECCCC--HHHHHHHHHHHHcCcEEEecCCCCCHHHHHHHHHhcCCcE
Confidence 5899999988888877553 33678899999888877 44544 6667889999888875 7899999999999999
Q ss_pred EEeCcHHHHHH
Q 010515 318 FCAVPRVLDRI 328 (508)
Q Consensus 318 l~~~P~~l~~l 328 (508)
+++.+.....+
T Consensus 104 vi~~~~~~~~~ 114 (503)
T 4fuq_A 104 VVCDPSKRDGI 114 (503)
T ss_dssp EEECGGGTTTT
T ss_pred EEECchhhHHH
Confidence 99988765443
No 69
>3vc3_A Beta-cyanoalnine synthase; beta-cyanoalanine synthase, transferase; HET: C6P; 1.77A {Glycine max} PDB: 3vbe_A*
Probab=54.32 E-value=63 Score=30.44 Aligned_cols=71 Identities=8% Similarity=-0.069 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCC
Q 010515 89 IKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (508)
Q Consensus 89 ~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 159 (508)
..+.....+.-+++|.+..+-...+-.-+.+.++|.+.|.-+..+-|...+.+-...++..++++++++..
T Consensus 72 ~~i~~a~~~g~l~~g~~~Vv~aSsGN~g~alA~~aa~~G~~~~IvmP~~~~~~k~~~~~~~GA~Vv~v~~~ 142 (344)
T 3vc3_A 72 AMITDAEEKNLITPGKTTLIEPTSGNMGISMAFMAAMKGYKMVLTMPSYTSLERRVTMRAFGAELILTDPA 142 (344)
T ss_dssp HHHHHHHHTTCCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHHHHHHcCCCCCCCCEEEEeCCcHHHHHHHHHHHHcCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC
Confidence 33444333333678877667777777888888999999998777667777777788899999999998753
No 70
>3ist_A Glutamate racemase; structural genomics, cell WALL biogenesis/degradation, isomerase, peptidoglycan synthesis; HET: MSE; 1.65A {Listeria monocytogenes} PDB: 3hfr_A* 3isv_A*
Probab=53.75 E-value=43 Score=30.33 Aligned_cols=63 Identities=16% Similarity=0.168 Sum_probs=50.3
Q ss_pred HHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHH
Q 010515 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI 117 (508)
Q Consensus 48 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~ 117 (508)
.+++...+..|+.-.+... |+....|-..|..++.+++.+.+..|.+.|++ ..++.-|+...+
T Consensus 19 tv~~~i~~~lP~~~~iy~~---D~a~~PYG~ks~~~i~~~~~~~~~~L~~~g~~----~IVIACNTa~~~ 81 (269)
T 3ist_A 19 TVVREVLKQLPHEQVYYLG---DTARCPYGPRDKEEVAKFTWEMTNFLVDRGIK----MLVIACNTATAA 81 (269)
T ss_dssp HHHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHHTTCS----EEEECCHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCCCccHH
Confidence 4566667789999999888 77777777899999999999999999988763 566666776654
No 71
>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*
Probab=53.60 E-value=90 Score=32.27 Aligned_cols=97 Identities=13% Similarity=0.112 Sum_probs=71.6
Q ss_pred CCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEE
Q 010515 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGF 298 (508)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~ 298 (508)
.++.+|++... ..+| ....+|...+...+..+...+. ..++.++|++...+|.. ..+.. ++.++..|+..+.
T Consensus 89 ~pd~~Al~~~~-~~~~--~~~~lTY~eL~~~v~~lA~~L~--~~Gv~~Gd~V~i~~~~~--~e~vva~lA~~~~Gav~vp 161 (652)
T 1pg4_A 89 NGDRTAIIWEG-DDTS--QSKHISYRELHRDVCRFANTLL--DLGIKKGDVVAIYMPMV--PEAAVAMLACARIGAVHSV 161 (652)
T ss_dssp HTTSEEEEEEC-SSTT--CEEEEEHHHHHHHHHHHHHHHH--HHTCCTTCEEEEECCSS--HHHHHHHHHHHHHTCEEEE
T ss_pred CCCceEEEEEc-CCCC--ceeEEeHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEeCCC--HHHHHHHHHHHHcCcEEEe
Confidence 35677776532 2222 2357899999988888777553 34678999999999887 34444 6677889998888
Q ss_pred ecC--CHHHHHHHhhhcCCeEEEeCcH
Q 010515 299 WRG--DVKLLLEDIGELKPTIFCAVPR 323 (508)
Q Consensus 299 ~~~--~~~~~~~~i~~~~~t~l~~~P~ 323 (508)
... .++.+...++..++.++++...
T Consensus 162 l~~~~~~~~l~~~l~~~~~~~li~~~~ 188 (652)
T 1pg4_A 162 IFGGFSPEAVAGCIIDSSSRLVITADE 188 (652)
T ss_dssp CCTTSCHHHHHHHHHHHTCSEEEEESE
T ss_pred cCCCCCHHHHHHHHHhcCCCEEEEcCc
Confidence 765 8899999999999999887554
No 72
>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}
Probab=53.50 E-value=52 Score=32.92 Aligned_cols=97 Identities=5% Similarity=-0.115 Sum_probs=72.7
Q ss_pred CCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHH-HHHHHHHcCCEEEE
Q 010515 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRA-IEEVFISNGAAIGF 298 (508)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~-~~~~~l~~G~~vv~ 298 (508)
.++.++++.. +..+|+..+...+..+...+. ..++.++|++...++-+ ..+. ..+.++..|+..+.
T Consensus 36 ~p~~~A~~~~---------~~~~Ty~el~~~~~~lA~~L~--~~Gv~~gd~V~i~~~n~--~~~~~~~lA~~~~G~~~vp 102 (529)
T 2v7b_A 36 RAGKTAYIDD---------TGSTTYGELEERARRFASALR--TLGVHPEERILLVMLDT--VALPVAFLGALYAGVVPVV 102 (529)
T ss_dssp GTTSEEEECS---------SCEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECCSS--THHHHHHHHHHHHTCEEEE
T ss_pred cCCceEEEeC---------CCCccHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEcCCc--HHHHHHHHHHHHcCceEEe
Confidence 3566666531 135899999888888777553 34678899999888876 3444 46667889999888
Q ss_pred ecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHH
Q 010515 299 WRG--DVKLLLEDIGELKPTIFCAVPRVLDRIY 329 (508)
Q Consensus 299 ~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~ 329 (508)
.+. .+..+...++..++..+++.+.....+.
T Consensus 103 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 135 (529)
T 2v7b_A 103 ANTLLTPADYVYMLTHSHARAVIASGALVQNVT 135 (529)
T ss_dssp CCTTCCHHHHHHHHHHHTCSEEEEEGGGHHHHH
T ss_pred cCcccCHHHHHHHHhccCCeEEEechhhhhHHH
Confidence 765 7899999999999999999887765543
No 73
>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*
Probab=50.96 E-value=97 Score=30.74 Aligned_cols=103 Identities=9% Similarity=-0.026 Sum_probs=71.9
Q ss_pred CCCCCceeEEeeccCCCCc--eEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchh--HHHHHHHHHhhCCeeee
Q 010515 57 NPNNRMLGQREIVDGKAGK--YVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE--WIIGMEACNALGLHCVP 132 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~--~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~--~~~~~lA~~~~G~~~vp 132 (508)
.++.+|++... -+.++. -..+|.+.+...+..++..+ ++.++|++...++..-. ++..+++.+..|+.++.
T Consensus 153 ~~~d~a~i~~T--SGTTG~PKgV~~sh~~l~~~~~~~~~~~---~~~~~d~~l~~~p~~~~~g~~~~~~~~l~~G~~~~~ 227 (505)
T 3nyq_A 153 DDGDPALVVYT--SGTTGPPKGAVIPRRALATTLDALADAW---QWTGEDVLVQGLPLFHVHGLVLGILGPLRRGGSVRH 227 (505)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHHHHHHHHHH---TCCTTCEEEECCCTTSHHHHTTTTHHHHHHTCEEEE
T ss_pred CCCCeEEEEeC--CCCcCCCCeEEEeHHHHHHHHHHHHHHh---CCCCCcEEEEeccHHHHHHHHHHHHHHHhcCCEEEE
Confidence 46777776652 233332 36789999988877766544 78899998887775422 23457888899998876
Q ss_pred ccCCCChHHHHHHHHhcCceEEEEcCCCHHHHhh
Q 010515 133 LYDTLGAGAVEFIICHSGVSIAFVEEKKIPEMLK 166 (508)
Q Consensus 133 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~ 166 (508)
.. ...++.+...+ +.++.+++.....+..+.+
T Consensus 228 ~~-~~~~~~~~~~i-~~~~t~~~~~P~~~~~l~~ 259 (505)
T 3nyq_A 228 LG-RFSTEGAAREL-NDGATMLFGVPTMYHRIAE 259 (505)
T ss_dssp CS-SCCHHHHHHHH-TTTCCEEEECHHHHHHHHH
T ss_pred CC-CCChHHHHHHH-hhCCeEEEehHHHHHHHHH
Confidence 64 56777777777 6789999888776665544
No 74
>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}
Probab=50.80 E-value=31 Score=39.25 Aligned_cols=123 Identities=12% Similarity=0.063 Sum_probs=85.0
Q ss_pred CCCCCceeEEeeccCCCCce--EEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHH-HHHHHHHhhCCeeeec
Q 010515 57 NPNNRMLGQREIVDGKAGKY--VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI-IGMEACNALGLHCVPL 133 (508)
Q Consensus 57 ~pd~~al~~~~~~~~~~~~~--~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~-~~~lA~~~~G~~~vpl 133 (508)
.|+.+|++... -+.+|.+ ..+|.+.+... .......++.++|+++...+-+.+.. .-+++.+..|+.++..
T Consensus 605 ~~~~~ayiiyT--SGSTG~PKgV~~~h~~l~~~----~~~~~~~~~~~~d~~l~~~~~~fd~~~~~~~~~l~~G~~l~~~ 678 (1304)
T 2vsq_A 605 DPNDPAYIMYT--SGTTGKPKGNITTHANIQGL----VKHVDYMAFSDQDTFLSVSNYAFDAFTFDFYASMLNAARLIIA 678 (1304)
T ss_dssp CTTSEEEEEEE--CCSSSSCEEEEEEHHHHHHH----HSSCCSSCCCTTCEEEECSCTTSTHHHHHHHHHHTTTCEEEEC
T ss_pred CCCCeEEEEeC--CCCCCCCCEEEEehHHHHHH----HHHHHhcCCCCCCEEEEECCccHHHHHHHHHHHHHcCCEEEEC
Confidence 47778877662 2333322 57888887643 11222457889999988888776543 4477888889988877
Q ss_pred cC--CCChHHHHHHHHhcCceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCC
Q 010515 134 YD--TLGAGAVEFIICHSGVSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK 185 (508)
Q Consensus 134 ~~--~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~ 185 (508)
++ ...++.+...+++.++.++......+..+.+........++.+++.+..-
T Consensus 679 ~~~~~~~~~~l~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~~~lr~~~~gGe~l 732 (1304)
T 2vsq_A 679 DEHTLLDTERLTDLILQENVNVMFATTALFNLLTDAGEDWMKGLRCILFGGERA 732 (1304)
T ss_dssp CGGGTTCHHHHHHHHHHHTCCEEEEEHHHHHHHHHHCSHHHHTCSEEEEESSCC
T ss_pred ChhhcCCHHHHHHHHHHcCCcEEEccHHHHHHHHhhchhcCCCccEEEEecCCC
Confidence 65 35788999999999999999888777666554333336788888776543
No 75
>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}
Probab=48.01 E-value=52 Score=36.05 Aligned_cols=99 Identities=13% Similarity=0.097 Sum_probs=74.8
Q ss_pred CCCCeEEEEeccCCCCCcceEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEE
Q 010515 220 KKNDICTIMYTSGTTGDPKGVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGF 298 (508)
Q Consensus 220 ~~~~~a~i~~TSGtTG~pK~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~ 298 (508)
.++.++++.. .+| ..+|.+.+......+...+. ..++.++|++...++-+ ..+.. .+.++..|+..+.
T Consensus 74 ~pd~~Al~~~---~~~----~~~TY~eL~~~~~~lA~~L~--~~Gv~~gd~V~i~~~ns--~e~~v~~lA~~~~Ga~~vp 142 (979)
T 3tsy_A 74 FATKPCLING---PTG----HVYTYSDVHVISRQIAANFH--KLGVNQNDVVMLLLPNC--PEFVLSFLAASFRGATATA 142 (979)
T ss_dssp TTTSEEEEET---TTC----CEEEHHHHHHHHHHHHHHHH--HTTCCTTCEEEEECSSC--HHHHHHHHHHHHHTCEEEE
T ss_pred CCCCeEEEEC---CCC----cEEEHHHHHHHHHHHHHHHH--HcCCCCcCEEEEEeCCC--HHHHHHHHHHHHcCCEEEe
Confidence 4677887642 222 46899999888888777553 34678999999998877 44544 6667889999888
Q ss_pred ecC--CHHHHHHHhhhcCCeEEEeCcHHHHHHH
Q 010515 299 WRG--DVKLLLEDIGELKPTIFCAVPRVLDRIY 329 (508)
Q Consensus 299 ~~~--~~~~~~~~i~~~~~t~l~~~P~~l~~l~ 329 (508)
.+. .++.+...++..++.++++.+.....+.
T Consensus 143 l~~~~~~~~l~~~l~~~~~~~vi~~~~~~~~~~ 175 (979)
T 3tsy_A 143 ANPFFTPAEIAKQAKASNTKLIITEARYVDKIK 175 (979)
T ss_dssp ECTTSCHHHHHHHHHHHTEEEEEECSTTTTTSH
T ss_pred eCCCCCHHHHHHHHHHcCCeEEEEChHHHHHHH
Confidence 865 8899999999999999999877655443
No 76
>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}
Probab=47.97 E-value=60 Score=32.78 Aligned_cols=108 Identities=14% Similarity=-0.028 Sum_probs=74.3
Q ss_pred EEeeHHHHHHHHHHHHHHHH-----HcCCCCCcEEEEEcCCchhH-HHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcC
Q 010515 77 VWKTYKEVYDLVIKVVNAIR-----TCGVEERGKCGIYGVNCPEW-IIGMEACNALGLHCVPLYDTLGAGAVEFIICHSG 150 (508)
Q Consensus 77 ~~~Ty~el~~~~~~lA~~L~-----~~gv~~gd~V~i~~~n~~~~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~ 150 (508)
..+|.+.+...+..++..+. ...+...+++....+...+. +..++..+..|+..+........+.+...+++.+
T Consensus 193 V~~th~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~~i~~~~ 272 (562)
T 3ite_A 193 VRVSRHNLSSFSDAWGKLIGNVAPKSLELGGVGKFLCLASRAFDVHIGEMFLAWRFGLCAVTGERLSMLDDLPRTFRELG 272 (562)
T ss_dssp EEEEHHHHHHHHHHHHHHHHHHCGGGGGCTTTCEEECCSCTTSTHHHHHHHHHHHTTCEEEECCHHHHHHSHHHHHHHTT
T ss_pred EEECchhHHHHHHHHHhhhccccchhcccCcCceEEEecCchhhhhHHHHHHHHhcccEEEecchhhCHHHHHHHHHHcC
Confidence 57899999988888777654 23567788887777766543 3446778888988776554444566778899999
Q ss_pred ceEEEEcCCCHHHHhhcCCCCCCCccEEEEeCCCC
Q 010515 151 VSIAFVEEKKIPEMLKTFPKTTEHLKTIVSFSKVK 185 (508)
Q Consensus 151 ~~~vi~~~~~~~~~~~~~~~~~~~l~~vi~~~~~~ 185 (508)
+.++......+..+.. .......++.+++.+..-
T Consensus 273 ~t~~~~~P~~l~~~~~-~~~~~~~lr~~~~gG~~l 306 (562)
T 3ite_A 273 VTHAGIVPSLLDQTGL-VPEDAPHLVYLGVGGEKM 306 (562)
T ss_dssp CCEEEECHHHHHHHTC-CGGGSTTCCEEEEESSCC
T ss_pred CCEEEcCHHHHhhccc-CccccCceEEEEEecCCC
Confidence 9999987765544322 222347788887766543
No 77
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=46.76 E-value=1.4e+02 Score=25.75 Aligned_cols=117 Identities=12% Similarity=0.110 Sum_probs=0.0
Q ss_pred eehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChH--HHHHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhcCCe
Q 010515 242 VSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLA--HIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPT 316 (508)
Q Consensus 242 ~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~--~~~g~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t 316 (508)
++-+-+-..+..+...+...........+++...+-. |..|... ....-..|..++.... .++.+.+.+++++++
T Consensus 66 ~aa~~~~~~l~~l~~~l~~~~~~~~~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~~~~~~d 145 (215)
T 3ezx_A 66 MSGKAMSNAMEVLTPELEKNKKEGEEAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEAAKHKGE 145 (215)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCC---CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHhhhcccCCCCCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHHHHcCCC
Q ss_pred EEEe------CcHH--HHHHHHHHHHhhhccChhHHHHHHHHHHhHHhhhhcCCCCCCcchhhHHHhHHHHHHHcCCcEE
Q 010515 317 IFCA------VPRV--LDRIYSGLNQKISSGGLLKKTLFNIAYSYKFHNLKKGHKHVEASPIADKIVFDKVKQSFGGRVR 388 (508)
Q Consensus 317 ~l~~------~P~~--l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 388 (508)
++.. ++.+ +..+.+.++....+...
T Consensus 146 ~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~v----------------------------------------------- 178 (215)
T 3ezx_A 146 KVLLVGSALMTTSMLGQKDLMDRLNEEKLRDSV----------------------------------------------- 178 (215)
T ss_dssp CEEEEEECSSHHHHTHHHHHHHHHHHTTCGGGS-----------------------------------------------
T ss_pred EEEEEchhcccCcHHHHHHHHHHHHHcCCCCCC-----------------------------------------------
Q ss_pred EEEEcCCCCCHHHHHHH
Q 010515 389 LILSGAAPLTPHVETFL 405 (508)
Q Consensus 389 ~i~~~G~~l~~~~~~~~ 405 (508)
.+++||.+++++..+.+
T Consensus 179 ~v~vGG~~~~~~~a~~i 195 (215)
T 3ezx_A 179 KCMFGGAPVSDKWIEEI 195 (215)
T ss_dssp EEEEESSSCCHHHHHHH
T ss_pred EEEEECCCCCHHHHHHh
No 78
>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*
Probab=46.48 E-value=1e+02 Score=30.61 Aligned_cols=80 Identities=11% Similarity=0.070 Sum_probs=61.5
Q ss_pred EEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC--CHHHHHHHhhhcCCe
Q 010515 240 VMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--DVKLLLEDIGELKPT 316 (508)
Q Consensus 240 V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~--~~~~~~~~i~~~~~t 316 (508)
-.+|...+...+..+...+. ..++.++|++...++-. ..+.. .+.++..|+..+..+. .++.+...++..+++
T Consensus 28 ~~~Ty~el~~~~~~lA~~L~--~~g~~~gd~V~i~~~n~--~~~~~~~lA~~~~G~v~vpl~~~~~~~~l~~il~~~~~~ 103 (521)
T 3l8c_A 28 ERRTYGQLKRDSDSIAAFID--SLALLAKSPVLVFGAQT--YDMLATFVALTKSGHAYIPVDVHSAPERILAIIEIAKPS 103 (521)
T ss_dssp EEEEHHHHHHHHHHHHHHHH--HTCCCTTCCEEEEECSS--HHHHHHHHHHHHTTCCEEEEETTSCHHHHHHHHHHSCCS
T ss_pred CeecHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEeCCC--HHHHHHHHHHHHhCCEEEecCccccHHHHHHHHHhCCCC
Confidence 45899999888888777553 34677888888887766 44544 6666889998887765 889999999999999
Q ss_pred EEEeCcH
Q 010515 317 IFCAVPR 323 (508)
Q Consensus 317 ~l~~~P~ 323 (508)
.+++...
T Consensus 104 ~ii~~~~ 110 (521)
T 3l8c_A 104 LIIAIEE 110 (521)
T ss_dssp EEEESSC
T ss_pred EEEecCc
Confidence 9987554
No 79
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=41.32 E-value=48 Score=31.54 Aligned_cols=62 Identities=15% Similarity=-0.103 Sum_probs=40.2
Q ss_pred HHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccC-----CCChHHHHHHHHhcC--ceEEEEc
Q 010515 93 NAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYD-----TLGAGAVEFIICHSG--VSIAFVE 157 (508)
Q Consensus 93 ~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~-----~~~~~~l~~~l~~~~--~~~vi~~ 157 (508)
..|...++++||.|++-.+..... .-++...|+.++.++. ....+++...+..-+ +++|+..
T Consensus 68 ~al~~l~~~~Gd~Vi~~~~~~~~~---~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~ 136 (377)
T 3ju7_A 68 AAIQLKKRKKGKYALMPSFTFPAT---PLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPY 136 (377)
T ss_dssp HHHHHHSCTTCCEEEEESSSCTHH---HHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCB
T ss_pred HHHHHcCCCCcCEEEECCCCcHHH---HHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEE
Confidence 344555789999988876655443 3456678887665543 246788888774444 6777643
No 80
>3ijw_A Aminoglycoside N3-acetyltransferase; anthrax, COA, acyltransferase, structural genom center for structural genomics of infectious diseases; HET: MSE ACO; 1.90A {Bacillus anthracis} SCOP: c.140.1.0 PDB: 3slf_A* 3n0s_A* 3slb_A* 3n0m_A* 3kzl_A* 3e4f_A*
Probab=40.24 E-value=41 Score=30.44 Aligned_cols=23 Identities=13% Similarity=0.176 Sum_probs=19.5
Q ss_pred HHHHHHHHcCCCCCcEEEEEcCC
Q 010515 90 KVVNAIRTCGVEERGKCGIYGVN 112 (508)
Q Consensus 90 ~lA~~L~~~gv~~gd~V~i~~~n 112 (508)
.+.+.|+++||++||.|.+...-
T Consensus 19 ~l~~~L~~LGi~~Gd~llVHsSl 41 (268)
T 3ijw_A 19 TITNDLRKLGLKKGMTVIVHSSL 41 (268)
T ss_dssp HHHHHHHHHTCCTTCEEEEEECT
T ss_pred HHHHHHHHcCCCCCCEEEEEech
Confidence 45668999999999999998764
No 81
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis, assimilatory sulfate reduction, S plant inorganic sulfur uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Probab=39.58 E-value=1.4e+02 Score=29.08 Aligned_cols=63 Identities=6% Similarity=-0.062 Sum_probs=47.0
Q ss_pred HHcCC-CCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcC
Q 010515 96 RTCGV-EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEE 158 (508)
Q Consensus 96 ~~~gv-~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 158 (508)
.+.|. ++|...++-...+-.-....++|.+.|.-++.+-|...+.+-...++..++++++++.
T Consensus 166 ~~~G~l~~g~~~VV~aSsGNhG~AlA~aAa~~Gl~~~IvmP~~~s~~k~~~~r~~GAeVv~v~~ 229 (430)
T 4aec_A 166 EQKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDP 229 (430)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECG
T ss_pred HHcCCCCCCCcEEEEECCCHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHCCCEEEEECC
Confidence 45564 7776555555567777788888999999777666666666777888999999999974
No 82
>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*
Probab=39.54 E-value=1.2e+02 Score=28.13 Aligned_cols=77 Identities=16% Similarity=0.073 Sum_probs=52.3
Q ss_pred EeeHHHHHHHHHHHH---HHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEE
Q 010515 78 WKTYKEVYDLVIKVV---NAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIA 154 (508)
Q Consensus 78 ~~Ty~el~~~~~~lA---~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 154 (508)
.+++.+......... +.++..++++||+|+|...-+.-..++.+|....|+.++.++. +++. ..+++..+++.+
T Consensus 136 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~--~~~r-~~~~~~~Ga~~~ 212 (348)
T 4eez_A 136 GLDPIEASSITCAGVTTYKAIKVSGVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDI--NQDK-LNLAKKIGADVT 212 (348)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHTCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEES--CHHH-HHHHHHTTCSEE
T ss_pred CCCHHHHhhcccceeeEEeeecccCCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEEC--cHHH-hhhhhhcCCeEE
Confidence 367776544433332 2345668999999999988777777777777777777766655 3443 356677888877
Q ss_pred EEc
Q 010515 155 FVE 157 (508)
Q Consensus 155 i~~ 157 (508)
|-.
T Consensus 213 i~~ 215 (348)
T 4eez_A 213 INS 215 (348)
T ss_dssp EEC
T ss_pred EeC
Confidence 754
No 83
>3gqw_A Fatty acid AMP ligase; FAAL, E. coli, ATP-dependent binding enzyme family,, structural genomics, PSI-2, protein structure initiative; HET: ZZ9; 3.00A {Escherichia coli O6} PDB: 3pbk_A*
Probab=39.12 E-value=1.6e+02 Score=29.40 Aligned_cols=87 Identities=8% Similarity=-0.136 Sum_probs=67.1
Q ss_pred eEEeehHHHHHHHhhhhhhhhhcccCCCCCcEEEEecChHHHHHHHH-HHHHHHcCCEEEEecC--C-------HHHHHH
Q 010515 239 GVMVSNENIVTFIAGVKCLLESVNEKLTSEDVYVSYLPLAHIFDRAI-EEVFISNGAAIGFWRG--D-------VKLLLE 308 (508)
Q Consensus 239 ~V~~sh~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~g~~~-~~~~l~~G~~vv~~~~--~-------~~~~~~ 308 (508)
.-.+|.+.+...+..+...+. ..++.++|++...++-+ ..+.. .+.++..|+..+..+. . ...+..
T Consensus 47 ~~~~Ty~eL~~~~~~lA~~L~--~~Gv~~gd~V~i~~~~~--~~~~~~~lA~~~~G~~~vpl~~~~~~~~~~~~~~~l~~ 122 (576)
T 3gqw_A 47 EDQLEYQTLKARAEAGAKRLL--SLNLKKGDRVALIAETS--SEFVEAFFACQYAGLVAVPLAIPMGVGQRDSWSAKLQG 122 (576)
T ss_dssp EEEEEHHHHHHHHHHHHHHHH--HTCCCTTCEEEEECCSS--HHHHHHHHHHHHTTCEEEEECCCSSSSSHHHHHHHHHH
T ss_pred eeEEcHHHHHHHHHHHHHHHH--HcCCCCCCEEEEEcCCc--HHHHHHHHHHHHhCCeEeecCCCCcccchhhHHHHHHH
Confidence 357899999998888877553 33678899999998876 34544 6667899999888754 3 678888
Q ss_pred HhhhcCCeEEEeCcHHHHHHH
Q 010515 309 DIGELKPTIFCAVPRVLDRIY 329 (508)
Q Consensus 309 ~i~~~~~t~l~~~P~~l~~l~ 329 (508)
.++..++..++........+.
T Consensus 123 ~l~~~~~~~ii~~~~~~~~~~ 143 (576)
T 3gqw_A 123 LLASCQPAAIITGDEWLPLVN 143 (576)
T ss_dssp HHHHHCCSEEEECGGGHHHHH
T ss_pred HHHhcCCCEEEecHHHHHHHH
Confidence 999999999999887665543
No 84
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Probab=38.61 E-value=1.6e+02 Score=27.21 Aligned_cols=64 Identities=11% Similarity=0.020 Sum_probs=44.3
Q ss_pred HHcC-CCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCC
Q 010515 96 RTCG-VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (508)
Q Consensus 96 ~~~g-v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 159 (508)
.+.| +++|+..++-...+-.-..+.++|.+.|..+..+-|...+..-...++..++++++++..
T Consensus 58 ~~~G~~~~~~~~vv~assGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 122 (322)
T 1z7w_A 58 EKKGLIKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122 (322)
T ss_dssp HHTTSCCTTTCEEEEECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHcCCCCCCCCEEEEeCCCHHHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 4555 466754444455666667777888899987766555545566667889999999998753
No 85
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism, cysteine biosynthesis, transferase; HET: LLP; 1.80A {Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Probab=38.12 E-value=1.7e+02 Score=26.81 Aligned_cols=64 Identities=13% Similarity=0.089 Sum_probs=43.3
Q ss_pred HHHcCC-CCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCC
Q 010515 95 IRTCGV-EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (508)
Q Consensus 95 L~~~gv-~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 159 (508)
+.+.|. ++|+.|+. ...+-.-..+.++|.+.|..+..+-|...+..-...++..++++++++..
T Consensus 58 a~~~g~~~~g~~vv~-assGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 122 (313)
T 2q3b_A 58 AEQAGLIKPDTIILE-PTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGA 122 (313)
T ss_dssp HHHTTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEeCCC
Confidence 344554 67776555 45555566667778899987666555545555667788999999998753
No 86
>3uhf_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta sandwich fold, isomerase; HET: DGL; 1.83A {Campylobacter jejuni} PDB: 3uho_A* 3uhp_A
Probab=37.34 E-value=70 Score=29.05 Aligned_cols=63 Identities=11% Similarity=0.097 Sum_probs=48.7
Q ss_pred HHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHH
Q 010515 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI 117 (508)
Q Consensus 48 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~ 117 (508)
.+++...+.-|+.-.+... |+..-.|-..||.++.+++.+.+..|.+.|+ ...++.-|+...+
T Consensus 38 tv~~~i~~~lP~e~~iy~~---D~a~~PYG~ks~e~i~~~~~~~~~~L~~~g~----d~IVIACNTa~~~ 100 (274)
T 3uhf_A 38 SVLKSLYEARLFDEIIYYG---DTARVPYGVKDKDTIIKFCLEALDFFEQFQI----DMLIIACNTASAY 100 (274)
T ss_dssp HHHHHHHHTTCCSEEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHTTSCC----SEEEECCHHHHHH
T ss_pred HHHHHHHHHCCCCCEEEEe---cCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCCChhHH
Confidence 3566666678999888888 7766666778999999999999999977766 3666666676654
No 87
>3out_A Glutamate racemase; structural genomics, center for structural genomics of infec diseases, csgid, MURI, cell envelope; HET: MSE DGL; 1.65A {Francisella tularensis subsp}
Probab=37.33 E-value=1.3e+02 Score=26.99 Aligned_cols=62 Identities=15% Similarity=0.068 Sum_probs=47.6
Q ss_pred HHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHH
Q 010515 49 VFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI 117 (508)
Q Consensus 49 ~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~ 117 (508)
+++...+..|+.-.+... |...-.+-..+|.++.+++.+.+..|.+.|++ ..++.-|+...+
T Consensus 22 v~~~i~~~lp~~~~iy~~---D~a~~PYG~~~~~~i~~~~~~~~~~L~~~g~~----~iVIACNTa~~~ 83 (268)
T 3out_A 22 IVKNLMSILPNEDIIYFG---DIARIPYGTKSRATIQKFAAQTAKFLIDQEVK----AIIIACNTISAI 83 (268)
T ss_dssp HHHHHHHHCTTCCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHHHTTCS----EEEECCHHHHHH
T ss_pred HHHHHHHHCCCCcEEEec---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC----EEEEeCCChHHH
Confidence 455555678988888877 77666667789999999999999999988763 566666666653
No 88
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Probab=36.88 E-value=1.1e+02 Score=28.26 Aligned_cols=76 Identities=9% Similarity=-0.024 Sum_probs=48.2
Q ss_pred EeeHHHHHHHHHHH---HHHHHHcCCCCCcEEEEEc-CCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceE
Q 010515 78 WKTYKEVYDLVIKV---VNAIRTCGVEERGKCGIYG-VNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSI 153 (508)
Q Consensus 78 ~~Ty~el~~~~~~l---A~~L~~~gv~~gd~V~i~~-~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 153 (508)
.+++.+........ .+.|...++++|++|+|.. .-..-..++.+|- ..|+.++.+. +.++ ..+++..+++.
T Consensus 125 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~vlV~Ga~G~vG~~a~q~a~-~~Ga~vi~~~---~~~~-~~~~~~lGa~~ 199 (321)
T 3tqh_A 125 KLSFLQAASLPTAGLTALQALNQAEVKQGDVVLIHAGAGGVGHLAIQLAK-QKGTTVITTA---SKRN-HAFLKALGAEQ 199 (321)
T ss_dssp TSCHHHHHHSHHHHHHHHHHHHHTTCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEE---CHHH-HHHHHHHTCSE
T ss_pred CCCHHHHhhhhhHHHHHHHHHHhcCCCCCCEEEEEcCCcHHHHHHHHHHH-HcCCEEEEEe---ccch-HHHHHHcCCCE
Confidence 35777665433222 1334567899999999997 4456666666654 5688766553 3444 56677888887
Q ss_pred EEEcC
Q 010515 154 AFVEE 158 (508)
Q Consensus 154 vi~~~ 158 (508)
++...
T Consensus 200 ~i~~~ 204 (321)
T 3tqh_A 200 CINYH 204 (321)
T ss_dssp EEETT
T ss_pred EEeCC
Confidence 76543
No 89
>2gzm_A Glutamate racemase; enzyme, isomerase; HET: DGL; 1.99A {Bacillus anthracis}
Probab=35.77 E-value=1.3e+02 Score=26.96 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=45.8
Q ss_pred HHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhH
Q 010515 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW 116 (508)
Q Consensus 48 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~ 116 (508)
.+++.-.+..|+...+... |...-.+-..++.++.+++.+.+..|.+.|+ ...++.-|+...
T Consensus 17 tv~~~i~~~lP~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~----d~iviaCNTas~ 78 (267)
T 2gzm_A 17 TVAKELIRQLPKERIIYLG---DTARCPYGPRSREEVRQFTWEMTEHLLDLNI----KMLVIACNTATA 78 (267)
T ss_dssp HHHHHHHHHCTTSCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHHTTTC----SEEEECCHHHHH
T ss_pred HHHHHHHHHCCCCCEEEec---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCchhhH
Confidence 4566667779998888777 6655555567899999999999999988766 355555566553
No 90
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; 1.90A {Geobacillus kaustophilus}
Probab=35.22 E-value=1.8e+02 Score=26.48 Aligned_cols=64 Identities=9% Similarity=-0.045 Sum_probs=42.6
Q ss_pred HHHcCC-CCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCC
Q 010515 95 IRTCGV-EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (508)
Q Consensus 95 L~~~gv-~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 159 (508)
+.+.|. ++|+.|+. ...+-.-..+.++|.+.|.-++.+-|...+..-...++..++++++++..
T Consensus 56 a~~~g~~~~g~~vv~-assGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 120 (308)
T 2egu_A 56 AEKAGKLKPGDTIVE-PTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120 (308)
T ss_dssp HHHTTCCCTTCEEEE-ECCHHHHHHHHHHHHHHTCEEEEEEESCSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEE-eCCCHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 334454 66765544 44455556667778889987666555444555666789999999998754
No 91
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Probab=34.84 E-value=1.2e+02 Score=28.02 Aligned_cols=77 Identities=12% Similarity=0.100 Sum_probs=49.6
Q ss_pred EeeHHHHHHHHHHH---HHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEE
Q 010515 78 WKTYKEVYDLVIKV---VNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIA 154 (508)
Q Consensus 78 ~~Ty~el~~~~~~l---A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 154 (508)
.+++.+........ .+.|...++++|++|+|....+.-..++.+|- ..|+.++.+.. +++.+. .++..+++.+
T Consensus 139 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~~ 214 (340)
T 3s2e_A 139 KVGFVEIAPILCAGVTVYKGLKVTDTRPGQWVVISGIGGLGHVAVQYAR-AMGLRVAAVDI--DDAKLN-LARRLGAEVA 214 (340)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHTTTCCTTSEEEEECCSTTHHHHHHHHH-HTTCEEEEEES--CHHHHH-HHHHTTCSEE
T ss_pred CCCHHHhhcccchhHHHHHHHHHcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--CHHHHH-HHHHcCCCEE
Confidence 36777654322221 23455668999999999887666777766665 46887666654 444444 5677888887
Q ss_pred EEcC
Q 010515 155 FVEE 158 (508)
Q Consensus 155 i~~~ 158 (508)
+...
T Consensus 215 i~~~ 218 (340)
T 3s2e_A 215 VNAR 218 (340)
T ss_dssp EETT
T ss_pred EeCC
Confidence 7543
No 92
>2nyg_A YOKD protein; PFAM02522, NYSGXRC, aminoglycoside 3-N- acetyltransferase, PSI-2, structural genomics, protein structure initiative; HET: COA; 2.60A {Bacillus subtilis} SCOP: c.140.1.2
Probab=34.30 E-value=60 Score=29.47 Aligned_cols=22 Identities=5% Similarity=0.117 Sum_probs=18.7
Q ss_pred HHHHHHHcCCCCCcEEEEEcCC
Q 010515 91 VVNAIRTCGVEERGKCGIYGVN 112 (508)
Q Consensus 91 lA~~L~~~gv~~gd~V~i~~~n 112 (508)
|.+.|+++||++||.|.++..-
T Consensus 18 L~~~L~~LGI~~Gd~llVHsSl 39 (273)
T 2nyg_A 18 ITEDLKALGLKKGMTVLVHSSL 39 (273)
T ss_dssp HHHHHHHHTCCTTCEEEEEECS
T ss_pred HHHHHHHcCCCCCCEEEEEech
Confidence 4568999999999999998754
No 93
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba histolytica} PDB: 3bm5_A*
Probab=33.66 E-value=1.9e+02 Score=26.99 Aligned_cols=62 Identities=13% Similarity=0.004 Sum_probs=42.0
Q ss_pred HcC-CCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCC
Q 010515 97 TCG-VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (508)
Q Consensus 97 ~~g-v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 159 (508)
+.| +++|+.|+... .+-.-..+.++|...|.-++.+-|...+..-...++..++++++++..
T Consensus 71 ~~g~~~~g~~vv~aS-sGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 133 (343)
T 2pqm_A 71 KDGRLKPGMEIIEST-SGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFGAELILTEGK 133 (343)
T ss_dssp HHTSSCTTCEEEEEC-SSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 344 46777655553 355556667777888987666555545566667888999999998753
No 94
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*
Probab=33.63 E-value=94 Score=29.21 Aligned_cols=78 Identities=14% Similarity=0.083 Sum_probs=47.7
Q ss_pred EeeHHHHHHHHHHH---HHHHHHcCCC-CCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceE
Q 010515 78 WKTYKEVYDLVIKV---VNAIRTCGVE-ERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSI 153 (508)
Q Consensus 78 ~~Ty~el~~~~~~l---A~~L~~~gv~-~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 153 (508)
.+++.+........ -+.|.+.+++ +|++|+|......-..++.+|- ..|+.++.+.. +++.+..+.+..+++.
T Consensus 152 ~ls~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~GaG~vG~~a~qlak-~~Ga~Vi~~~~--~~~~~~~~~~~lGa~~ 228 (357)
T 2cf5_A 152 GMAVEQAAPLLCAGVTVYSPLSHFGLKQPGLRGGILGLGGVGHMGVKIAK-AMGHHVTVISS--SNKKREEALQDLGADD 228 (357)
T ss_dssp SCCHHHHTGGGTHHHHHHHHHHHTSTTSTTCEEEEECCSHHHHHHHHHHH-HHTCEEEEEES--STTHHHHHHTTSCCSC
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHH-HCCCeEEEEeC--ChHHHHHHHHHcCCce
Confidence 36776643221111 1335566888 9999999986556666666665 46886655554 3444444555778877
Q ss_pred EEEcC
Q 010515 154 AFVEE 158 (508)
Q Consensus 154 vi~~~ 158 (508)
++...
T Consensus 229 vi~~~ 233 (357)
T 2cf5_A 229 YVIGS 233 (357)
T ss_dssp EEETT
T ss_pred eeccc
Confidence 76543
No 95
>1zuw_A Glutamate racemase 1; (R)-glutamate, peptidoglycan biosynthesi isomerase; HET: DGL; 1.75A {Bacillus subtilis}
Probab=33.63 E-value=1.5e+02 Score=26.68 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=46.8
Q ss_pred HHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHH-cCCCCCcEEEEEcCCchhH
Q 010515 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEW 116 (508)
Q Consensus 48 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~~~ 116 (508)
.+++.-.+..|+...+... |...-.+-..|..++.+++.+.+..|.+ .|++ ..++.-|+...
T Consensus 17 tv~~~i~~~lP~~~~iy~~---D~~~~PyG~~s~~~i~~~~~~~~~~L~~~~g~d----~iViACNTas~ 79 (272)
T 1zuw_A 17 TVAKEIMRQLPKENIIYVG---DTKRCPYGPRPEEEVLQYTWELTNYLLENHHIK----MLVIACNTATA 79 (272)
T ss_dssp HHHHHHHHHSTTCCEEEEE---CGGGCCCSSSCHHHHHHHHHHHHHHHHHHSCCS----EEEECCHHHHH
T ss_pred HHHHHHHHhCCCCcEEEec---cCCCCCCCCCCHHHHHHHHHHHHHHHHhhcCCC----EEEEeCchhhH
Confidence 5677777789999888776 6655555568999999999999999998 7763 55555566554
No 96
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis, transferase, ENZ kinetics, enzymatic sythesis of novel compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB: 2bhs_A* 2bht_A* 2jc3_A*
Probab=33.59 E-value=2.4e+02 Score=25.68 Aligned_cols=63 Identities=10% Similarity=-0.057 Sum_probs=43.8
Q ss_pred HHcC-CCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCC
Q 010515 96 RTCG-VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (508)
Q Consensus 96 ~~~g-v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 159 (508)
.+.| +++|+.|+... .+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 53 ~~~g~~~~g~~vv~~s-sGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~Ga~v~~~~~~ 116 (303)
T 2v03_A 53 EKRGEIKPGDVLIEAT-SGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKE 116 (303)
T ss_dssp HHTTCCCTTCEEEEEC-SSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECTT
T ss_pred HHcCCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3445 36776665554 455556667778899987766555555566667889999999999863
No 97
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Probab=32.44 E-value=1.2e+02 Score=28.34 Aligned_cols=74 Identities=15% Similarity=0.081 Sum_probs=47.0
Q ss_pred EeeHHHHHHHHHHH---HHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEE
Q 010515 78 WKTYKEVYDLVIKV---VNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIA 154 (508)
Q Consensus 78 ~~Ty~el~~~~~~l---A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 154 (508)
.+++.+........ -+.|.+.++++|++|+|...-+.-..++.+|- ..|+.++.+..+- +.+. +++..+++.+
T Consensus 149 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~Vi~~~~~~--~~~~-~~~~lGa~~v 224 (348)
T 3two_A 149 NAPLEKVAPLLCAGITTYSPLKFSKVTKGTKVGVAGFGGLGSMAVKYAV-AMGAEVSVFARNE--HKKQ-DALSMGVKHF 224 (348)
T ss_dssp TSCHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEESCSHHHHHHHHHHH-HTTCEEEEECSSS--TTHH-HHHHTTCSEE
T ss_pred CCCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCeEEEEeCCH--HHHH-HHHhcCCCee
Confidence 36776654222221 23455668999999999987556666666665 5688766665533 3333 4567888888
Q ss_pred E
Q 010515 155 F 155 (508)
Q Consensus 155 i 155 (508)
+
T Consensus 225 ~ 225 (348)
T 3two_A 225 Y 225 (348)
T ss_dssp E
T ss_pred c
Confidence 8
No 98
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=31.69 E-value=1.7e+02 Score=27.66 Aligned_cols=61 Identities=10% Similarity=0.030 Sum_probs=38.9
Q ss_pred HHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCC----CChHHHHHHHHhc--CceEEEEcC
Q 010515 95 IRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDT----LGAGAVEFIICHS--GVSIAFVEE 158 (508)
Q Consensus 95 L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~----~~~~~l~~~l~~~--~~~~vi~~~ 158 (508)
+...++++||.|++..+....... ++...|+.++.++.. ...+++...++.. ++++|+...
T Consensus 64 ~~~l~~~~gd~Vl~~~~~~~~~~~---~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~ 130 (394)
T 1o69_A 64 LRVAGVKQDDIVLASSFTFIASVA---PICYLKAKPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH 130 (394)
T ss_dssp HHHTTCCTTCEEEEESSSCGGGTH---HHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC
T ss_pred HHHcCCCCCCEEEECCCccHHHHH---HHHHcCCEEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC
Confidence 334457889998888776655543 334478776655532 4667888877754 567666653
No 99
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1 PDB: 2eco_A* 2ecq_A* 2efy_A*
Probab=31.58 E-value=2.9e+02 Score=25.06 Aligned_cols=63 Identities=6% Similarity=-0.046 Sum_probs=42.2
Q ss_pred HHcC-CCCCc--EEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCC
Q 010515 96 RTCG-VEERG--KCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (508)
Q Consensus 96 ~~~g-v~~gd--~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 159 (508)
.+.| +++|+ .|+. ...+-.-..+.++|.+.|..++.+-|...+..-...++..++++++++..
T Consensus 52 ~~~g~~~~g~~~~vv~-assGN~g~a~A~~a~~~G~~~~i~~p~~~~~~k~~~~~~~Ga~V~~~~~~ 117 (304)
T 1ve1_A 52 EERGILRPGSGQVIVE-PTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPE 117 (304)
T ss_dssp HHTTSCCTTSCCEEEE-SCCSHHHHHHHHHHHHHTCEEEEEEETTCCHHHHHHHHHTTCEEEEECTT
T ss_pred HHcCCCCCCCccEEEE-eCCcHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEECCC
Confidence 3445 56676 4433 44445556667778899987666555444556667888999999998865
No 100
>2vvt_A Glutamate racemase; isomerase, peptidoglycan synthesis, cell WALL biogenesis/degradation, cell shape, benzyl purine, MURI inhibitor; HET: I24 DGL; 1.65A {Enterococcus faecalis} PDB: 2jfp_A* 2jfo_A* 2jfu_A 2jfv_A* 2jfw_A*
Probab=29.46 E-value=1.9e+02 Score=26.31 Aligned_cols=64 Identities=16% Similarity=0.201 Sum_probs=46.8
Q ss_pred HHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHH
Q 010515 47 WDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI 117 (508)
Q Consensus 47 ~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~ 117 (508)
..+++.-.+..|+...+... |...-.+-..++.++.+++.+.+..|.+.|+ ...++.-|+...+
T Consensus 37 ltv~~~i~~~~P~~~~iy~~---D~~~~pyG~~s~~~i~~~~~~~~~~L~~~g~----d~IVIACNTas~~ 100 (290)
T 2vvt_A 37 LTVLKEALKQLPNERLIYLG---DTARCPYGPRPAEQVVQFTWEMADFLLKKRI----KMLVIACNTATAV 100 (290)
T ss_dssp HHHHHHHHHHCTTSCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHHTTTC----SEEEECCHHHHHH
T ss_pred HHHHHHHHHHCCCccEEEec---ccccCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCcchhHH
Confidence 45788888889999888766 6554444457899999999999999987765 3555555565533
No 101
>2jfz_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: 003 DGL; 1.86A {Helicobacter pylori} PDB: 2jfx_A* 2jfy_A* 2w4i_A*
Probab=29.41 E-value=68 Score=28.65 Aligned_cols=61 Identities=10% Similarity=0.098 Sum_probs=44.9
Q ss_pred HHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchh
Q 010515 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE 115 (508)
Q Consensus 48 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~ 115 (508)
.+++.-.+..|+...+... |.....+-..++.++.++..+.+..|.+.|+ | ..++.-|+..
T Consensus 14 tv~~~l~~~lP~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~---d-~iviaCNTa~ 74 (255)
T 2jfz_A 14 SVLKSLLKARLFDEIIYYG---DSARVPYGTKDPTTIKQFGLEALDFFKPHEI---E-LLIVACNTAS 74 (255)
T ss_dssp HHHHHHHHTTCCSEEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHGGGCC---S-CEEECCHHHH
T ss_pred HHHHHHHHHCCCCCEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC---C-EEEEeCchhh
Confidence 3455666678998888877 7666566567999999999999999988766 3 4445555554
No 102
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=29.33 E-value=1.5e+02 Score=27.76 Aligned_cols=54 Identities=6% Similarity=-0.081 Sum_probs=25.8
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCC-------CChHHHHHHHHhcCceEEEE
Q 010515 100 VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDT-------LGAGAVEFIICHSGVSIAFV 156 (508)
Q Consensus 100 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~-------~~~~~l~~~l~~~~~~~vi~ 156 (508)
+++||.|++..+.-.. ...++...|+.++.++.. ...+++...++..++++|+.
T Consensus 106 ~~~gd~vl~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i 166 (391)
T 3dzz_A 106 TSPGDQILVQEPVYNM---FYSVIEGNGRRVISSDLIYENSKYSVNWADLEEKLATPSVRMMVF 166 (391)
T ss_dssp SCTTCEEEECSSCCHH---HHHHHHHTTCEEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEE
T ss_pred CCCCCeEEECCCCcHH---HHHHHHHcCCEEEEeeeeecCCceeecHHHHHHHHhccCceEEEE
Confidence 3456665554443332 222334455554444331 45566666665445555544
No 103
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Probab=29.29 E-value=1.9e+02 Score=26.99 Aligned_cols=79 Identities=11% Similarity=-0.041 Sum_probs=48.5
Q ss_pred EeeHHHHHHHH--HHHH-HHHHH-cCCCCCcEEEEEcC-CchhHHHHHHHHHhhCCeee-eccCCCChHHHHHHHHhcCc
Q 010515 78 WKTYKEVYDLV--IKVV-NAIRT-CGVEERGKCGIYGV-NCPEWIIGMEACNALGLHCV-PLYDTLGAGAVEFIICHSGV 151 (508)
Q Consensus 78 ~~Ty~el~~~~--~~lA-~~L~~-~gv~~gd~V~i~~~-n~~~~~~~~lA~~~~G~~~v-pl~~~~~~~~l~~~l~~~~~ 151 (508)
.+++.+..... -..| ..|.+ .++++|++|+|... .+.-.+++.+|- ..|+.++ ..+..-..++....++..++
T Consensus 139 ~l~~~~Aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lGa 217 (357)
T 1zsy_A 139 DIPLQSAATLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAA-ALGLRTINVVRDRPDIQKLSDRLKSLGA 217 (357)
T ss_dssp SSCHHHHHHTTSHHHHHHHHHHHSSCCCTTCEEEESSTTSHHHHHHHHHHH-HHTCEEEEEECCCSCHHHHHHHHHHTTC
T ss_pred CCCHHHHhhhcccHHHHHHHHHHHhccCCCCEEEEeCCcCHHHHHHHHHHH-HcCCEEEEEecCccchHHHHHHHHhcCC
Confidence 35777654321 1122 23444 47999999999987 456666666665 4688544 44443344455567788899
Q ss_pred eEEEEc
Q 010515 152 SIAFVE 157 (508)
Q Consensus 152 ~~vi~~ 157 (508)
+.++..
T Consensus 218 ~~vi~~ 223 (357)
T 1zsy_A 218 EHVITE 223 (357)
T ss_dssp SEEEEH
T ss_pred cEEEec
Confidence 888753
No 104
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} SCOP: c.79.1.0 PDB: 3fgp_A* 3dki_A* 3dwi_A*
Probab=29.23 E-value=2.9e+02 Score=25.48 Aligned_cols=63 Identities=11% Similarity=-0.022 Sum_probs=44.9
Q ss_pred HHcC-CCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCC
Q 010515 96 RTCG-VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (508)
Q Consensus 96 ~~~g-v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 159 (508)
.+.| +++++.|+.. ..+-.-..+.++|.+.|.-++.+-|...+..-...++..++++++++..
T Consensus 65 ~~~g~l~~~~~vv~a-SsGN~g~alA~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~ 128 (325)
T 3dwg_A 65 EADGLLRPGATILEP-TSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQIIFSAAE 128 (325)
T ss_dssp HHTTCCCTTCEEEEE-CSSHHHHHHHHHHHHHTCEEEEEEESSSCHHHHHHHHHHTCEEEEECST
T ss_pred HHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3444 5677776554 4456667777888888987766655555666677889999999999864
No 105
>2jfq_A Glutamate racemase; cell WALL, isomerase, cell shape, peptidoglycan synthesis, peptidoglycan biosynthesis; HET: DGL; 2.15A {Staphylococcus aureus}
Probab=29.17 E-value=1.8e+02 Score=26.44 Aligned_cols=62 Identities=13% Similarity=0.111 Sum_probs=45.4
Q ss_pred HHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhH
Q 010515 48 DVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEW 116 (508)
Q Consensus 48 ~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~ 116 (508)
.+++...+..|+...+... |...-.+-..++.++.+++.+.++.|.+.|+ ...++.-|+...
T Consensus 36 tv~~~i~~~~P~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~----d~IVIaCNTas~ 97 (286)
T 2jfq_A 36 TVAKEIMRQLPNETIYYLG---DIGRCPYGPRPGEQVKQYTVEIARKLMEFDI----KMLVIACNTATA 97 (286)
T ss_dssp HHHHHHHHHCTTCCEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHTTSCC----SEEEECCHHHHH
T ss_pred HHHHHHHHHCCCccEEEec---cCCCCCcCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCCchhH
Confidence 5677777789988888766 6554455567999999999999999987665 355555566553
No 106
>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*
Probab=29.13 E-value=1.7e+02 Score=26.92 Aligned_cols=59 Identities=19% Similarity=0.128 Sum_probs=40.4
Q ss_pred HHcCCCCCcEEEEEcCCc-hhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEc
Q 010515 96 RTCGVEERGKCGIYGVNC-PEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVE 157 (508)
Q Consensus 96 ~~~gv~~gd~V~i~~~n~-~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~ 157 (508)
+..++++|++|+|....+ +-..++.+| ...|+.++.+.. +++.+..+.+..+++.++..
T Consensus 143 ~~~~~~~g~~vlI~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~--~~~~~~~~~~~~g~~~~~~~ 202 (336)
T 4b7c_A 143 DVGQPKNGETVVISGAAGAVGSVAGQIA-RLKGCRVVGIAG--GAEKCRFLVEELGFDGAIDY 202 (336)
T ss_dssp HTTCCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEES--SHHHHHHHHHTTCCSEEEET
T ss_pred HhcCCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeC--CHHHHHHHHHHcCCCEEEEC
Confidence 345899999999998854 555555555 467887665544 45666655578888776643
No 107
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Probab=28.78 E-value=1.4e+02 Score=28.12 Aligned_cols=59 Identities=12% Similarity=0.069 Sum_probs=40.0
Q ss_pred HHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCC-eeeeccCCCChHHHHHHHHhcCceEEEE
Q 010515 94 AIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGL-HCVPLYDTLGAGAVEFIICHSGVSIAFV 156 (508)
Q Consensus 94 ~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~-~~vpl~~~~~~~~l~~~l~~~~~~~vi~ 156 (508)
.|...++++|++|+|......-.+++.+|- ..|+ .++.++. +++. ..+++..+++.++.
T Consensus 174 ~l~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~~Vi~~~~--~~~~-~~~a~~lGa~~vi~ 233 (370)
T 4ej6_A 174 GVDLSGIKAGSTVAILGGGVIGLLTVQLAR-LAGATTVILSTR--QATK-RRLAEEVGATATVD 233 (370)
T ss_dssp HHHHHTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEECS--CHHH-HHHHHHHTCSEEEC
T ss_pred HHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCEEEEECC--CHHH-HHHHHHcCCCEEEC
Confidence 355668999999999987555666666655 5788 6665554 3443 34667788887764
No 108
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=28.43 E-value=2e+02 Score=24.49 Aligned_cols=57 Identities=12% Similarity=-0.076 Sum_probs=43.7
Q ss_pred CcEEEEEcCCc----hhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCC
Q 010515 103 RGKCGIYGVNC----PEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (508)
Q Consensus 103 gd~V~i~~~n~----~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 159 (508)
+-+|++.+..+ +...+....+...|.-+.-+....+.+++...++..+|++|..+..
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~~~~~~d~v~lS~~ 148 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAVKKYQPDIVGMSAL 148 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHHHHHCCSEEEEECC
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEecc
Confidence 33566665543 4445555556677999998999999999999999999999998764
No 109
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1
Probab=28.13 E-value=1.8e+02 Score=27.22 Aligned_cols=62 Identities=11% Similarity=-0.017 Sum_probs=42.8
Q ss_pred HHHH--cCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcC
Q 010515 94 AIRT--CGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEE 158 (508)
Q Consensus 94 ~L~~--~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 158 (508)
.|.+ .++++|++|+|......-..++.+|-...|+.++.+.. +++.+. .++..+++.++...
T Consensus 176 al~~~~~~~~~g~~VlV~GaG~vG~~avqlak~~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~vi~~~ 239 (359)
T 1h2b_A 176 AVKKAARTLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDV--KEEKLK-LAERLGADHVVDAR 239 (359)
T ss_dssp HHHHHHTTCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--SHHHHH-HHHHTTCSEEEETT
T ss_pred HHHhhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHH-HHHHhCCCEEEecc
Confidence 4555 78999999999988667777777766543887665554 344443 45678888877543
No 110
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Probab=27.95 E-value=2.9e+02 Score=25.32 Aligned_cols=56 Identities=11% Similarity=0.104 Sum_probs=38.6
Q ss_pred cCCCCCcEEEEEcCCc-hhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEc
Q 010515 98 CGVEERGKCGIYGVNC-PEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVE 157 (508)
Q Consensus 98 ~gv~~gd~V~i~~~n~-~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~ 157 (508)
.++++|++|+|....+ +-..++.+| ...|+.++.+.. +++.+. .++..+++.++..
T Consensus 144 ~~~~~g~~vlV~Ga~g~iG~~~~~~a-~~~Ga~Vi~~~~--~~~~~~-~~~~~ga~~~~~~ 200 (334)
T 3qwb_A 144 YHVKKGDYVLLFAAAGGVGLILNQLL-KMKGAHTIAVAS--TDEKLK-IAKEYGAEYLINA 200 (334)
T ss_dssp SCCCTTCEEEESSTTBHHHHHHHHHH-HHTTCEEEEEES--SHHHHH-HHHHTTCSEEEET
T ss_pred ccCCCCCEEEEECCCCHHHHHHHHHH-HHCCCEEEEEeC--CHHHHH-HHHHcCCcEEEeC
Confidence 3789999999998544 555555555 457887766654 455554 5677888877754
No 111
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=27.75 E-value=2.5e+02 Score=25.79 Aligned_cols=56 Identities=11% Similarity=0.044 Sum_probs=32.7
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeecc--C----CCChHHHHHHHHh----cCceEEEEcC
Q 010515 100 VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLY--D----TLGAGAVEFIICH----SGVSIAFVEE 158 (508)
Q Consensus 100 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~--~----~~~~~~l~~~l~~----~~~~~vi~~~ 158 (508)
+++||.|++..+........ +...|+.++.++ . ....+++...++. -++++++...
T Consensus 90 ~~~gd~vl~~~~~~~~~~~~---~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~ 155 (371)
T 2e7j_A 90 AKKDAWVVMDENCHYSSYVA---AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITY 155 (371)
T ss_dssp CCTTCEEEEETTCCHHHHHH---HHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEES
T ss_pred hCCCCEEEEccCcchHHHHH---HHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEEC
Confidence 45788777776654443333 556677666555 2 2356777777764 2556655543
No 112
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*
Probab=27.68 E-value=1.7e+02 Score=27.40 Aligned_cols=62 Identities=16% Similarity=0.168 Sum_probs=41.8
Q ss_pred HHHHcCCC-CCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcC
Q 010515 94 AIRTCGVE-ERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEE 158 (508)
Q Consensus 94 ~L~~~gv~-~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 158 (508)
.|.+.+++ +|++|+|.....+-..++.+|- ..|+.++.+.. +++.+..+.+..+++.++...
T Consensus 178 al~~~~~~~~g~~VlV~GaG~vG~~~~q~a~-~~Ga~Vi~~~~--~~~~~~~~~~~lGa~~v~~~~ 240 (366)
T 1yqd_A 178 PLKYFGLDEPGKHIGIVGLGGLGHVAVKFAK-AFGSKVTVIST--SPSKKEEALKNFGADSFLVSR 240 (366)
T ss_dssp HHHHTTCCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--CGGGHHHHHHTSCCSEEEETT
T ss_pred HHHhcCcCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHHHHHHhcCCceEEecc
Confidence 45567888 9999999987556666666654 56886655554 445555555578888766443
No 113
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=27.65 E-value=1.7e+02 Score=28.31 Aligned_cols=62 Identities=11% Similarity=-0.006 Sum_probs=32.9
Q ss_pred EEEcCCchhHHHH-HHHHHhhCCeeeeccCCCChH--HHHHHHHhcCceEEEEcCCCHHHHhhcC
Q 010515 107 GIYGVNCPEWIIG-MEACNALGLHCVPLYDTLGAG--AVEFIICHSGVSIAFVEEKKIPEMLKTF 168 (508)
Q Consensus 107 ~i~~~n~~~~~~~-~lA~~~~G~~~vpl~~~~~~~--~l~~~l~~~~~~~vi~~~~~~~~~~~~~ 168 (508)
+++..++...+.. +.++...|-.++.-++.+..- .+...+...+.+++.++....+.+.+..
T Consensus 100 ~v~~~sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~~~~~v~~~d~~~l~~ai 164 (430)
T 3ri6_A 100 VLALGSGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGIEVRFVDVMDSLAVEHAC 164 (430)
T ss_dssp EEEESCHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTCEEEEECTTCHHHHHHHC
T ss_pred EEEECCHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCCEEEEeCCCCHHHHHHhh
Confidence 4555566554433 334445565555444544322 1222566777777777766666555554
No 114
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=27.52 E-value=1.4e+02 Score=20.89 Aligned_cols=46 Identities=17% Similarity=0.134 Sum_probs=34.3
Q ss_pred EEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCe
Q 010515 77 VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLH 129 (508)
Q Consensus 77 ~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~ 129 (508)
..+.+.+|.+ .+.+.+..+.+.|.++|.++.....+...+...|..
T Consensus 22 ~~ip~~~l~~-------~~~~l~~~~~~~ivv~C~~g~rs~~aa~~L~~~G~~ 67 (85)
T 2jtq_A 22 INIPLKEVKE-------RIATAVPDKNDTVKVYCNAGRQSGQAKEILSEMGYT 67 (85)
T ss_dssp EECCHHHHHH-------HHHHHCCCTTSEEEEEESSSHHHHHHHHHHHHTTCS
T ss_pred EEcCHHHHHH-------HHHHhCCCCCCcEEEEcCCCchHHHHHHHHHHcCCC
Confidence 5677777654 344456778889999999988877777777777864
No 115
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=27.48 E-value=1.9e+02 Score=26.79 Aligned_cols=7 Identities=14% Similarity=0.368 Sum_probs=3.5
Q ss_pred eEEeehH
Q 010515 239 GVMVSNE 245 (508)
Q Consensus 239 ~V~~sh~ 245 (508)
|+++...
T Consensus 211 G~~~~~~ 217 (384)
T 1eg5_A 211 GITYIRK 217 (384)
T ss_dssp EEEEECT
T ss_pred EEEEEcC
Confidence 5555544
No 116
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1
Probab=26.76 E-value=1.7e+02 Score=27.52 Aligned_cols=75 Identities=17% Similarity=0.129 Sum_probs=45.5
Q ss_pred eeHHHHHHHHHHH---HHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEE
Q 010515 79 KTYKEVYDLVIKV---VNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAF 155 (508)
Q Consensus 79 ~Ty~el~~~~~~l---A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi 155 (508)
+++.+........ -..|.+.++++|++|+|....+.-..++.+|- ..|+.++.+.. +++.+. .++..+++.++
T Consensus 168 ls~~~aa~l~~~~~tA~~al~~~~~~~g~~VlV~GaG~vG~~aiqlak-~~Ga~Vi~~~~--~~~~~~-~a~~lGa~~vi 243 (369)
T 1uuf_A 168 EQLAAVAPLLCAGITTYSPLRHWQAGPGKKVGVVGIGGLGHMGIKLAH-AMGAHVVAFTT--SEAKRE-AAKALGADEVV 243 (369)
T ss_dssp GGHHHHGGGGTHHHHHHHHHHHTTCCTTCEEEEECCSHHHHHHHHHHH-HTTCEEEEEES--SGGGHH-HHHHHTCSEEE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HCCCEEEEEeC--CHHHHH-HHHHcCCcEEe
Confidence 6676643221111 23455668999999999987556666666664 45887555554 333333 34567887776
Q ss_pred Ec
Q 010515 156 VE 157 (508)
Q Consensus 156 ~~ 157 (508)
..
T Consensus 244 ~~ 245 (369)
T 1uuf_A 244 NS 245 (369)
T ss_dssp ET
T ss_pred cc
Confidence 43
No 117
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=26.69 E-value=1.4e+02 Score=27.94 Aligned_cols=54 Identities=13% Similarity=0.041 Sum_probs=24.4
Q ss_pred CCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCC-----CChHHHHHHHHhcCceEEEE
Q 010515 99 GVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDT-----LGAGAVEFIICHSGVSIAFV 156 (508)
Q Consensus 99 gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~-----~~~~~l~~~l~~~~~~~vi~ 156 (508)
++++||.|++..+...... -++...|+.++.++.. ...+++...++. ++++|+.
T Consensus 75 ~~~~gd~Vl~~~~~~~~~~---~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~ 133 (393)
T 1mdo_A 75 GIGEGDEVITPSMTWVSTL---NMIVLLGANPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIP 133 (393)
T ss_dssp TCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCCBCHHHHHHHCCT-TEEEECC
T ss_pred CCCCCCEEEeCCCccHhHH---HHHHHCCCEEEEEeccCCcCCCCHHHHHHhcCC-CceEEEE
Confidence 4556666655544433322 2334455544433321 344555544432 4455444
No 118
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*
Probab=26.61 E-value=2.2e+02 Score=26.31 Aligned_cols=78 Identities=9% Similarity=-0.083 Sum_probs=49.6
Q ss_pred eeHHHHHHHHHHH---HHHHHHc--CCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceE
Q 010515 79 KTYKEVYDLVIKV---VNAIRTC--GVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSI 153 (508)
Q Consensus 79 ~Ty~el~~~~~~l---A~~L~~~--gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 153 (508)
+++.+........ .+.|.+. ++++|++|+|...-..-..++.+|-..-|+.++.++. +++.+ .+++..+++.
T Consensus 143 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~--~~~~~-~~~~~lGa~~ 219 (345)
T 3jv7_A 143 LDPVAAAPLTDAGLTPYHAISRVLPLLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDL--DDDRL-ALAREVGADA 219 (345)
T ss_dssp CCHHHHGGGGTTTHHHHHHHHTTGGGCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEES--CHHHH-HHHHHTTCSE
T ss_pred CCHHHhhhhhhhHHHHHHHHHHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHH-HHHHHcCCCE
Confidence 5666654332222 2334453 7899999999987666777777776654666666654 34443 4567889988
Q ss_pred EEEcCC
Q 010515 154 AFVEEK 159 (508)
Q Consensus 154 vi~~~~ 159 (508)
++...+
T Consensus 220 ~i~~~~ 225 (345)
T 3jv7_A 220 AVKSGA 225 (345)
T ss_dssp EEECST
T ss_pred EEcCCC
Confidence 876554
No 119
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=26.44 E-value=2.3e+02 Score=26.61 Aligned_cols=58 Identities=12% Similarity=-0.037 Sum_probs=31.4
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCC----CChHHHHHHHHhcCceEEEEcC
Q 010515 100 VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDT----LGAGAVEFIICHSGVSIAFVEE 158 (508)
Q Consensus 100 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~----~~~~~l~~~l~~~~~~~vi~~~ 158 (508)
+++||.|++..+...... ..-++...|+.++.++.. ...+++...++..++++|+...
T Consensus 83 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 144 (416)
T 3isl_A 83 IEPEDDVLIPIYGRFGYL-LTEIAERYGANVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVH 144 (416)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEES
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEc
Confidence 567787777665433211 222345556655443322 3566777777655566666543
No 120
>3sr3_A Microcin immunity protein MCCF; csgid, structural genomics, MCCF protein, center for structu genomics of infectious diseases, immune system; 1.50A {Bacillus anthracis} PDB: 3gjz_A 3t5m_A* 3u1b_A* 3tyx_A*
Probab=26.40 E-value=1.9e+02 Score=26.96 Aligned_cols=61 Identities=18% Similarity=0.135 Sum_probs=38.2
Q ss_pred CCCCCcEEEEEcCCchh------HHHHHHHHH-hhCCeeeeccCCC------------ChHHHHHHHHhcCceEEEEcCC
Q 010515 99 GVEERGKCGIYGVNCPE------WIIGMEACN-ALGLHCVPLYDTL------------GAGAVEFIICHSGVSIAFVEEK 159 (508)
Q Consensus 99 gv~~gd~V~i~~~n~~~------~~~~~lA~~-~~G~~~vpl~~~~------------~~~~l~~~l~~~~~~~vi~~~~ 159 (508)
-+++||+|+|++|.+.- .+......+ ..|..++.-.... -.+++..++.+-..++|++...
T Consensus 9 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 88 (336)
T 3sr3_A 9 SLKYGDTIGIYSPSSPVTYTSPKRFERAKSYLLQKGFHILEGSLTGRYDYYRSGSIQERAKELNALIRNPNVSCIMSTIG 88 (336)
T ss_dssp CCCTTCEEEEECSSSCHHHHCHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEEcccccccccccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 47899999999999842 222222223 3577666422111 1236677777788899998764
No 121
>2oho_A Glutamate racemase; isomerase; 2.25A {Streptococcus pyogenes m1 gas} PDB: 2ohg_A 2ohv_A*
Probab=26.19 E-value=2e+02 Score=25.81 Aligned_cols=64 Identities=17% Similarity=0.221 Sum_probs=46.4
Q ss_pred HHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHH
Q 010515 47 WDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWI 117 (508)
Q Consensus 47 ~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~ 117 (508)
..+++.-.+..|+...+... |...-.+-..++.++.+++.+.+..|.+.|+ ...++.-|+...+
T Consensus 25 ltv~~~i~~~~P~~~~iy~~---D~~~~Pyg~~s~~~i~~~~~~~~~~L~~~g~----d~iviaCNTas~~ 88 (273)
T 2oho_A 25 LTVVCELIRQLPHEKIVYIG---DSARAPYGPRPKKQIKEYTWELVNFLLTQNV----KMIVFACNTATAV 88 (273)
T ss_dssp HHHHHHHHHHCTTCCEEEEE---CGGGCCCTTSCHHHHHHHHHHHHHHHHTTTC----SEEEECCHHHHHH
T ss_pred HHHHHHHHHHCCCCCEEEEe---CCCCCCCCCCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCchHhHH
Confidence 45788888889988887766 5544444457899999999999999987665 3555555565543
No 122
>2ayi_A Aminopeptidase T; metallopeptidase, hydrolase; 3.70A {Thermus thermophilus} SCOP: e.60.1.1
Probab=26.13 E-value=1.5e+02 Score=28.64 Aligned_cols=60 Identities=8% Similarity=-0.054 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHHHc--CCCCCcEEEEEcCCc-hhH-HHHHHHHHhhCCeeeeccCCCChHHHHHH
Q 010515 84 VYDLVIKVVNAIRTC--GVEERGKCGIYGVNC-PEW-IIGMEACNALGLHCVPLYDTLGAGAVEFI 145 (508)
Q Consensus 84 l~~~~~~lA~~L~~~--gv~~gd~V~i~~~n~-~~~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~ 145 (508)
+..+..++|..+.+. ++++|+.|.|..+.. .++ -.+.-++..+|+.++.+.. +.+++.+.
T Consensus 4 ~~~~l~k~A~~~v~~~~~lq~Ge~vlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v~~--~d~~~~r~ 67 (408)
T 2ayi_A 4 FKRNLEKLAELAIRVGLNLEKGQEVIATAPIEAVDFVRLLAEKAYREGASLFTVIY--GDQELARK 67 (408)
T ss_dssp CHHHHHHHHHHHHHTTTCCCTTCEEEEEECTTCHHHHHHHHHHHHHTTCSEEEEEE--CCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEEEe--cCHHHHHH
Confidence 345677788888764 679999999998865 333 3446678888998776553 44444443
No 123
>4h1h_A LMO1638 protein; MCCF-like, csgid, MCCF homolog, structural genomics, niaid, institute of allergy and infectious diseases; 2.46A {Listeria monocytogenes}
Probab=25.95 E-value=1.6e+02 Score=27.40 Aligned_cols=61 Identities=7% Similarity=-0.043 Sum_probs=37.9
Q ss_pred CCCCCcEEEEEcCCch------hHHHHHHH-HHhhCCeeeeccCCC------------ChHHHHHHHHhcCceEEEEcCC
Q 010515 99 GVEERGKCGIYGVNCP------EWIIGMEA-CNALGLHCVPLYDTL------------GAGAVEFIICHSGVSIAFVEEK 159 (508)
Q Consensus 99 gv~~gd~V~i~~~n~~------~~~~~~lA-~~~~G~~~vpl~~~~------------~~~~l~~~l~~~~~~~vi~~~~ 159 (508)
-+++||+|+|++|.+. +.+..... +-..|..++.-+.-. -.+++..++.+-..+.|++...
T Consensus 8 ~L~~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (327)
T 4h1h_A 8 KLKQGDEIRIIAPSRSIGIMADNQVEIAVNRLTDMGFKVTFGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIG 87 (327)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCCCEEEEEeCCCCcCccCHHHHHHHHHHHHhCCCEEEECcchhhccCcccCCHHHHHHHHHHHhhCCCCCEEEEcCC
Confidence 4789999999999863 22222222 234576665432111 2246777778888999998753
No 124
>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*
Probab=25.77 E-value=3.4e+02 Score=24.30 Aligned_cols=76 Identities=11% Similarity=-0.047 Sum_probs=45.4
Q ss_pred eeHHHH-HHHHHHHHHHHHHcC-CCCCcEEEEEcCCchhHHHHHHHHHhhC-------------CeeeeccC--CCChHH
Q 010515 79 KTYKEV-YDLVIKVVNAIRTCG-VEERGKCGIYGVNCPEWIIGMEACNALG-------------LHCVPLYD--TLGAGA 141 (508)
Q Consensus 79 ~Ty~el-~~~~~~lA~~L~~~g-v~~gd~V~i~~~n~~~~~~~~lA~~~~G-------------~~~vpl~~--~~~~~~ 141 (508)
+++++. .+.+..+...+++.| .+ .|++.+.-++|+.++..-|..++ .+.+.++. ....++
T Consensus 17 ~~~~~~i~~~~~~L~~~l~~~g~~~---~vvvglSGGvDSsv~a~L~~~a~~~lg~~~~~~~~~v~av~~~~~~~~~~~d 93 (275)
T 1wxi_A 17 INAEEEIRRSVDFLKSYLQTYPFIK---SLVLGISGGQDSTLAGKLCQMAINELRLETGNESLQFIAVRLPYGVQADEQD 93 (275)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSTTCC---EEEEECCSSHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECCSSSCTTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCC---CEEEECcCcHHHHHHHHHHHHHHHHhccccccccceEEEEEeCCCCccCHHH
Confidence 566654 445566666666666 43 68888888999866654444431 33344442 224556
Q ss_pred HHHHHHhcCc-eEEEEc
Q 010515 142 VEFIICHSGV-SIAFVE 157 (508)
Q Consensus 142 l~~~l~~~~~-~~vi~~ 157 (508)
...+.+..+. ...+.+
T Consensus 94 A~~va~~lgi~~~~~i~ 110 (275)
T 1wxi_A 94 CQDAIAFIQPDRVLTVN 110 (275)
T ss_dssp HHHHHHHHCCSEEEECC
T ss_pred HHHHHHHcCCCeEEEEe
Confidence 6677777776 555544
No 125
>3sma_A FRBF; N-acetyl transferase, acetyl COA binding, transferase; HET: ACO; 2.00A {Streptomyces rubellomurinus}
Probab=25.77 E-value=46 Score=30.37 Aligned_cols=29 Identities=14% Similarity=0.049 Sum_probs=23.1
Q ss_pred EEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCC
Q 010515 77 VWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVN 112 (508)
Q Consensus 77 ~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n 112 (508)
..+|-++|. +.|+++||++||.|.+...-
T Consensus 20 ~~~T~~~L~-------~~L~~LGI~~Gd~llVHsSL 48 (286)
T 3sma_A 20 ELVTRDRLA-------SDLAALGVRPGGVLLVHASL 48 (286)
T ss_dssp CEECHHHHH-------HHHHHHTCCTTCEEEEEECS
T ss_pred CCcCHHHHH-------HHHHHcCCCCCCEEEEEech
Confidence 457777664 58999999999999998654
No 126
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Probab=25.71 E-value=1.7e+02 Score=27.29 Aligned_cols=79 Identities=8% Similarity=-0.055 Sum_probs=47.9
Q ss_pred EeeHHHHHHHHH--HHH-HHHHH-cCCCCC-cEEEEEcC-CchhHHHHHHHHHhhCCeeeeccCCCCh-HHHHHHHHhcC
Q 010515 78 WKTYKEVYDLVI--KVV-NAIRT-CGVEER-GKCGIYGV-NCPEWIIGMEACNALGLHCVPLYDTLGA-GAVEFIICHSG 150 (508)
Q Consensus 78 ~~Ty~el~~~~~--~lA-~~L~~-~gv~~g-d~V~i~~~-n~~~~~~~~lA~~~~G~~~vpl~~~~~~-~~l~~~l~~~~ 150 (508)
.+++.+...... ..| ..|.+ .++++| ++|+|... -..-..++.+|- ..|+.++.+...... ++....++..+
T Consensus 138 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~~VlV~Ga~G~vG~~aiqlak-~~Ga~vi~~~~~~~~~~~~~~~~~~lG 216 (364)
T 1gu7_A 138 GLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAVGKYASQIGK-LLNFNSISVIRDRPNLDEVVASLKELG 216 (364)
T ss_dssp CCCHHHHHTCTTHHHHHHHHHHSSSCCCTTTCEEEESCTTSHHHHHHHHHHH-HHTCEEEEEECCCTTHHHHHHHHHHHT
T ss_pred CCCHHHHhhccccHHHHHHHHHHhhccCCCCcEEEECCCCcHHHHHHHHHHH-HCCCEEEEEecCccccHHHHHHHHhcC
Confidence 377776543221 122 23444 379999 99999987 556666666665 468865555433222 34445567888
Q ss_pred ceEEEEc
Q 010515 151 VSIAFVE 157 (508)
Q Consensus 151 ~~~vi~~ 157 (508)
++.++..
T Consensus 217 a~~vi~~ 223 (364)
T 1gu7_A 217 ATQVITE 223 (364)
T ss_dssp CSEEEEH
T ss_pred CeEEEec
Confidence 8887753
No 127
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}
Probab=25.00 E-value=1.6e+02 Score=26.88 Aligned_cols=73 Identities=10% Similarity=0.082 Sum_probs=47.7
Q ss_pred EeeHHHHHHHHHHHHHH---HHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEE
Q 010515 78 WKTYKEVYDLVIKVVNA---IRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIA 154 (508)
Q Consensus 78 ~~Ty~el~~~~~~lA~~---L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 154 (508)
.+++.+.......++.. |...++++|++|+|......-..++.+|- ..|+.++.+. + ++.+ .+++..+++.+
T Consensus 115 ~~~~~~aa~l~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qlak-~~Ga~Vi~~~-~--~~~~-~~~~~lGa~~v 189 (315)
T 3goh_A 115 NLSFERAAALPCPLLTAWQAFEKIPLTKQREVLIVGFGAVNNLLTQMLN-NAGYVVDLVS-A--SLSQ-ALAAKRGVRHL 189 (315)
T ss_dssp TSCHHHHHTSHHHHHHHHHHHTTSCCCSCCEEEEECCSHHHHHHHHHHH-HHTCEEEEEC-S--SCCH-HHHHHHTEEEE
T ss_pred CCCHHHHhhCccHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEE-C--hhhH-HHHHHcCCCEE
Confidence 46888765433333333 33458899999999999556666666664 5688766665 2 2332 34567899888
Q ss_pred E
Q 010515 155 F 155 (508)
Q Consensus 155 i 155 (508)
+
T Consensus 190 ~ 190 (315)
T 3goh_A 190 Y 190 (315)
T ss_dssp E
T ss_pred E
Confidence 8
No 128
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=24.75 E-value=3e+02 Score=25.69 Aligned_cols=54 Identities=0% Similarity=-0.089 Sum_probs=28.6
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhc---CceEEEEc
Q 010515 100 VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHS---GVSIAFVE 157 (508)
Q Consensus 100 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~---~~~~vi~~ 157 (508)
.++||.|++-.+....+ .-++...|+.+++++. ...+++...++.. ++++|++.
T Consensus 124 ~~~gd~V~~~~p~~~~~---~~~~~~~g~~~~~v~~-~d~~~l~~~l~~~~~~~~~~v~~~ 180 (398)
T 3a2b_A 124 MGRNDYILLDERDHASI---IDGSRLSFSKVIKYGH-NNMEDLRAKLSRLPEDSAKLICTD 180 (398)
T ss_dssp SCTTCEEEEETTCCHHH---HHHHHHSSSEEEEECT-TCHHHHHHHHHTSCSSSCEEEEEE
T ss_pred hCCCCEEEECCccCHHH---HHHHHHcCCceEEeCC-CCHHHHHHHHHhhccCCceEEEEe
Confidence 45666666655544333 2234445666655543 3556666666554 45555544
No 129
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=24.68 E-value=1.2e+02 Score=23.30 Aligned_cols=76 Identities=8% Similarity=-0.120 Sum_probs=45.0
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEE
Q 010515 31 FAKDGFPAPIPGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIY 109 (508)
Q Consensus 31 ~~~~~~~~~~~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~ 109 (508)
++..+-....+......+.+-...+.+|+....+.. .+.......+.+.==.+||..++..|.+.|+...+++.+.
T Consensus 20 ~F~~~s~~L~~~~~~~L~~~a~~l~~~~~~~i~I~G---htD~~g~~~~N~~LS~~RA~aV~~~L~~~Gv~~~~ri~~~ 95 (123)
T 3oon_A 20 EFYPNSFQILQKEYKKIDLIAKLLEKFKKNNILIEG---HTEQFGLEEEMHELSEKRARAIGNYLIKMKVKDKDQILFK 95 (123)
T ss_dssp EBCTTSCCBCGGGHHHHHHHHHHHHHSCSCCEEEEE---CCCSCCCHHHHHHHHHHHHHHHHHHHHHTTSSCGGGEEEE
T ss_pred EeCCCChhcCHHHHHHHHHHHHHHHHCCCceEEEEE---EeCCCCChHHHHHHHHHHHHHHHHHHHHcCCCchHeEEEE
Confidence 333333333444455555666667778875444444 2222222344555556899999999999999745665543
No 130
>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A
Probab=23.96 E-value=2.3e+02 Score=27.61 Aligned_cols=77 Identities=14% Similarity=0.079 Sum_probs=47.6
Q ss_pred EeeHHHHHHHHHHHHHH---HHH---cCCCCCcEEEEEcCCc-hhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcC
Q 010515 78 WKTYKEVYDLVIKVVNA---IRT---CGVEERGKCGIYGVNC-PEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSG 150 (508)
Q Consensus 78 ~~Ty~el~~~~~~lA~~---L~~---~gv~~gd~V~i~~~n~-~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~ 150 (508)
.+++.+...-....... |.+ .++++|++|+|....+ +-.+++.+| ...|+.++.+.. +++.+. +++..+
T Consensus 198 ~l~~~~aa~l~~~~~ta~~al~~~~~~~~~~g~~VlV~GasG~vG~~avqla-k~~Ga~vi~~~~--~~~~~~-~~~~lG 273 (456)
T 3krt_A 198 HLSWEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFA-LAGGANPICVVS--SPQKAE-ICRAMG 273 (456)
T ss_dssp TSCHHHHHSSHHHHHHHHHHHTSTTTTCCCTTCEEEETTTTSHHHHHHHHHH-HHTTCEEEEEES--SHHHHH-HHHHHT
T ss_pred CCCHHHHHHhhhHHHHHHHHHHhhcccCCCCCCEEEEECCCCHHHHHHHHHH-HHcCCeEEEEEC--CHHHHH-HHHhhC
Confidence 36777765322222222 322 4789999999998844 555555555 457887666653 455544 557788
Q ss_pred ceEEEEcC
Q 010515 151 VSIAFVEE 158 (508)
Q Consensus 151 ~~~vi~~~ 158 (508)
++.++...
T Consensus 274 a~~vi~~~ 281 (456)
T 3krt_A 274 AEAIIDRN 281 (456)
T ss_dssp CCEEEETT
T ss_pred CcEEEecC
Confidence 88877543
No 131
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=23.90 E-value=1.8e+02 Score=22.16 Aligned_cols=64 Identities=11% Similarity=0.008 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEE
Q 010515 41 PGMESCWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGI 108 (508)
Q Consensus 41 ~~~~tl~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i 108 (508)
+......+.+-...+.+|+....+.. .+.......+.+.==.+||..++..|.+.|+.+ +++.+
T Consensus 19 ~~~~~~L~~ia~~l~~~p~~~i~I~G---htD~~G~~~~N~~LS~~RA~aV~~~L~~~Gi~~-~ri~~ 82 (118)
T 2hqs_H 19 SDFAQMLDAHANFLRSNPSYKVTVEG---HADERGTPEYNISLGERRANAVKMYLQGKGVSA-DQISI 82 (118)
T ss_dssp GGGHHHHHHHHHHHHHCTTCCEEEEE---CCCSSSCHHHHHHHHHHHHHHHHHHHHHTTCCG-GGEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEEE---ECCCCCCHHHHHHHHHHHHHHHHHHHHHcCCCH-HHEEE
Confidence 44444445555556678875444444 222211123445555778999999999999965 44433
No 132
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=23.81 E-value=2.8e+02 Score=25.78 Aligned_cols=57 Identities=12% Similarity=0.010 Sum_probs=32.7
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccC----CCChHHHHHHHHhcCceEEEEc
Q 010515 100 VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYD----TLGAGAVEFIICHSGVSIAFVE 157 (508)
Q Consensus 100 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~----~~~~~~l~~~l~~~~~~~vi~~ 157 (508)
+++||.|++..+..... ...-++...|+.++.++. ....+++...++..++++|+..
T Consensus 90 ~~~gd~vl~~~~~~~~~-~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~ 150 (396)
T 2ch1_A 90 LEEGDRVLIAVNGIWAE-RAVEMSERYGADVRTIEGPPDRPFSLETLARAIELHQPKCLFLT 150 (396)
T ss_dssp CCTTCEEEEEESSHHHH-HHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEE
T ss_pred cCCCCeEEEEcCCcccH-HHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHhCCCCEEEEE
Confidence 46788877776654443 222244556765554432 2566777777765456666654
No 133
>1zjc_A Aminopeptidase AMPS; metallopeptidase, hydrolase; 1.80A {Staphylococcus aureus subsp} SCOP: e.60.1.1
Probab=23.61 E-value=1.4e+02 Score=28.91 Aligned_cols=60 Identities=10% Similarity=-0.006 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHc--CCCCCcEEEEEcCCc-hhH-HHHHHHHHhhCCeeeeccCCCChHHHHHH
Q 010515 84 VYDLVIKVVNAIRTC--GVEERGKCGIYGVNC-PEW-IIGMEACNALGLHCVPLYDTLGAGAVEFI 145 (508)
Q Consensus 84 l~~~~~~lA~~L~~~--gv~~gd~V~i~~~n~-~~~-~~~~lA~~~~G~~~vpl~~~~~~~~l~~~ 145 (508)
+..+..++|..|.+. ++++|+.|.|..+-. .++ -.+.-++..+|+.++.+.. +.+++.+.
T Consensus 7 ~~~~l~k~A~~lV~~~~~lq~Ge~VlI~~~~~~~~l~r~l~~~a~~~Ga~~v~v~~--~~~~~~r~ 70 (418)
T 1zjc_A 7 YKEKLQQYAELLVKVGMNVQPKQPVFIRSSVETLELTHLIVEEAYHCGASDVRVVY--SDPTLKRL 70 (418)
T ss_dssp HHHHHHHHHHHHHHTTTCCCTTCCEEEEEETTCHHHHHHHHHHHHHTTCCSEEEEE--ECHHHHHH
T ss_pred hHHHHHHHHHHHHHhCcCCCCCCEEEEEECCchHHHHHHHHHHHHHcCCceEEEEe--ccHHHHHH
Confidence 456777888888764 679999999988754 333 3446678888998776553 44444433
No 134
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Probab=23.53 E-value=1.7e+02 Score=27.30 Aligned_cols=75 Identities=8% Similarity=-0.034 Sum_probs=46.9
Q ss_pred eeHHHHHHHHHHHH---HHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCC-eeeeccCCCChHHHHHHHHhcCceEE
Q 010515 79 KTYKEVYDLVIKVV---NAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGL-HCVPLYDTLGAGAVEFIICHSGVSIA 154 (508)
Q Consensus 79 ~Ty~el~~~~~~lA---~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~-~~vpl~~~~~~~~l~~~l~~~~~~~v 154 (508)
+++.+...-...++ +.+...++++|++|+|...-..-..++.+|- ..|+ .++.++. +++. ..+++..+++.+
T Consensus 140 ~~~~~aa~~~~~~~ta~~al~~~~~~~g~~VlV~GaG~vG~~a~qla~-~~Ga~~Vi~~~~--~~~~-~~~~~~lGa~~v 215 (352)
T 3fpc_A 140 IPLEAAVMIPDMMTTGFHGAELANIKLGDTVCVIGIGPVGLMSVAGAN-HLGAGRIFAVGS--RKHC-CDIALEYGATDI 215 (352)
T ss_dssp SCHHHHTTTTTHHHHHHHHHHHTTCCTTCCEEEECCSHHHHHHHHHHH-TTTCSSEEEECC--CHHH-HHHHHHHTCCEE
T ss_pred CCHHHHhhccchhHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCcEEEEECC--CHHH-HHHHHHhCCceE
Confidence 66666543212221 2355678999999999986556666666654 5787 5555554 3333 356677888877
Q ss_pred EEc
Q 010515 155 FVE 157 (508)
Q Consensus 155 i~~ 157 (508)
+..
T Consensus 216 i~~ 218 (352)
T 3fpc_A 216 INY 218 (352)
T ss_dssp ECG
T ss_pred EcC
Confidence 753
No 135
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=23.52 E-value=2.5e+02 Score=26.07 Aligned_cols=58 Identities=7% Similarity=-0.114 Sum_probs=32.8
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeecc--CC--CChHHHHHHHHh-cCceEEEEcC
Q 010515 100 VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLY--DT--LGAGAVEFIICH-SGVSIAFVEE 158 (508)
Q Consensus 100 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~--~~--~~~~~l~~~l~~-~~~~~vi~~~ 158 (508)
+++||.|++..+...-.. ..-.+...|+.++.++ .. ...+++...++. -++++|+...
T Consensus 80 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~ 142 (392)
T 2z9v_A 80 ISPDDVVLNLASGVYGKG-FGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCH 142 (392)
T ss_dssp CCTTCCEEEEESSHHHHH-HHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEES
T ss_pred cCCCCEEEEecCCcccHH-HHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEec
Confidence 568888877766443332 1122234566554443 32 467788888764 3566666553
No 136
>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}
Probab=23.42 E-value=1.8e+02 Score=27.35 Aligned_cols=75 Identities=17% Similarity=0.129 Sum_probs=46.6
Q ss_pred eeHHHHHHHHHHHHHH---H-HHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCC-eeeeccCCCChHHHHHHHHhcCceE
Q 010515 79 KTYKEVYDLVIKVVNA---I-RTCGVEERGKCGIYGVNCPEWIIGMEACNALGL-HCVPLYDTLGAGAVEFIICHSGVSI 153 (508)
Q Consensus 79 ~Ty~el~~~~~~lA~~---L-~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~-~~vpl~~~~~~~~l~~~l~~~~~~~ 153 (508)
+++.+.......++.. + ...++++|++|+|...-..-.+++.+|- ..|+ .++.++.+ ++.+. +++..+++.
T Consensus 166 ~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~GaG~vG~~a~q~a~-~~Ga~~Vi~~~~~--~~~~~-~a~~lGa~~ 241 (378)
T 3uko_A 166 APLDKVCLLGCGVPTGLGAVWNTAKVEPGSNVAIFGLGTVGLAVAEGAK-TAGASRIIGIDID--SKKYE-TAKKFGVNE 241 (378)
T ss_dssp SCHHHHGGGGTHHHHHHHHHHTTTCCCTTCCEEEECCSHHHHHHHHHHH-HHTCSCEEEECSC--TTHHH-HHHTTTCCE
T ss_pred CCHHHhhhhhhhHHHHHHHHHhhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCCeEEEEcCC--HHHHH-HHHHcCCcE
Confidence 5777654432222222 3 3458999999999987556666666655 5687 56666543 33333 567888887
Q ss_pred EEEc
Q 010515 154 AFVE 157 (508)
Q Consensus 154 vi~~ 157 (508)
++..
T Consensus 242 vi~~ 245 (378)
T 3uko_A 242 FVNP 245 (378)
T ss_dssp EECG
T ss_pred EEcc
Confidence 7754
No 137
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=23.41 E-value=1.9e+02 Score=27.39 Aligned_cols=55 Identities=13% Similarity=0.093 Sum_probs=32.9
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcC
Q 010515 100 VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEE 158 (508)
Q Consensus 100 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 158 (508)
.++||.|++-.+.... ..-++...|+.+++++. ...+++...++..++++|+++.
T Consensus 140 ~~~gd~Vl~~~~~~~~---~~~~~~~~g~~~~~~~~-~d~~~le~~l~~~~~~~vi~~~ 194 (409)
T 3kki_A 140 CQPNTNVYIDFFAHMS---LWEGARYANAQAHPFMH-NNCDHLRMLIQRHGPGIIVVDS 194 (409)
T ss_dssp CCTTCEEEEETTSCHH---HHHHHHHTTCEEEEECT-TCHHHHHHHHHHHCSCEEEEES
T ss_pred cCCCCEEEECCCcCHH---HHHHHHHcCCeEEEecC-CCHHHHHHHHHhcCCeEEEECC
Confidence 4677777665444332 33345556777666643 4567777777766566666653
No 138
>3tla_A MCCF; serine protease, hydrolase; 1.20A {Escherichia coli} PDB: 3tle_A* 3tlg_A 3tlb_A* 3tlc_A* 3tlz_A* 3tly_A
Probab=23.40 E-value=2.1e+02 Score=27.16 Aligned_cols=61 Identities=10% Similarity=0.047 Sum_probs=38.3
Q ss_pred CCCCCcEEEEEcCCchh------HHHHHHHHH-hhCCeeeeccCCC------------ChHHHHHHHHhcCceEEEEcCC
Q 010515 99 GVEERGKCGIYGVNCPE------WIIGMEACN-ALGLHCVPLYDTL------------GAGAVEFIICHSGVSIAFVEEK 159 (508)
Q Consensus 99 gv~~gd~V~i~~~n~~~------~~~~~lA~~-~~G~~~vpl~~~~------------~~~~l~~~l~~~~~~~vi~~~~ 159 (508)
-+++||+|+|++|.+.- .+......+ ..|..++.-+... -.+++..++.+-.+++|++...
T Consensus 39 ~Lk~GD~I~ivaPSs~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~agtd~~Ra~dL~~af~Dp~i~aI~~~rG 118 (371)
T 3tla_A 39 PLAVGDTIGFFSSSAPATVTAKNRFFRGVEFLQRKGFKLVSGKLTGKTDFYRSGTIKERAQEFNELVYNPDITCIMSTIG 118 (371)
T ss_dssp CCCTTCEEEEECSSCCHHHHTHHHHHHHHHHHHHTTCEEEECTTTTCCBTTBSSCHHHHHHHHHHHHTCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 58999999999999742 222222222 3577766432211 1235666777778899998764
No 139
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP; 1.50A {Homo sapiens} SCOP: c.79.1.0 PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Probab=22.95 E-value=1.5e+02 Score=27.68 Aligned_cols=56 Identities=13% Similarity=0.004 Sum_probs=39.9
Q ss_pred CcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCC
Q 010515 103 RGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (508)
Q Consensus 103 gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 159 (508)
.+.|+.. ..+-.-..+.++|.+.|.-++.+-|...+.+-...++..++++++++..
T Consensus 76 ~~~vv~~-SsGNhg~a~A~aa~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~v~~~ 131 (346)
T 3l6b_A 76 PKAVVTH-SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPS 131 (346)
T ss_dssp CSCEEEE-CSSHHHHHHHHHHHHTTCCEEEEEETTSCHHHHHHHHHTTCEEEEECSS
T ss_pred CCEEEEe-CCCHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC
Confidence 3444333 3455667777889999987666556556666778889999999998765
No 140
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*
Probab=22.55 E-value=4.3e+02 Score=26.24 Aligned_cols=61 Identities=13% Similarity=0.018 Sum_probs=44.7
Q ss_pred HcC-CCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcC
Q 010515 97 TCG-VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEE 158 (508)
Q Consensus 97 ~~g-v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~ 158 (508)
+.| +++|+.|+. ...+-.-....++|...|.-++.+-|...+..-...++..+++++++..
T Consensus 106 ~~g~~~~g~~vv~-~ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~ 167 (527)
T 3pc3_A 106 EQGLLKPGYTIIE-PTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167 (527)
T ss_dssp HHTCCCTTCEEEE-ECSSHHHHHHHHHHHHHTCEEEEEEETTSCHHHHHHHHHTTCEEEEECT
T ss_pred HcCCCCCCCEEEE-eCCCHHHHHHHHHHHHhCCeEEEEEcCCCCHHHHHHHHHCCCEEEEeCC
Confidence 445 578887655 4455566777778888898777666665566677888999999999875
No 141
>4e5s_A MCCFLIKE protein (BA_5613); structural genomics, center for structural genomi infectious diseases, csgid, serine peptidase S66; 1.95A {Bacillus anthracis}
Probab=22.53 E-value=2.3e+02 Score=26.39 Aligned_cols=61 Identities=8% Similarity=-0.022 Sum_probs=38.3
Q ss_pred CCCCCcEEEEEcCCchh------HHHHHHHHH-hhCCeeeeccCCC------------ChHHHHHHHHhcCceEEEEcCC
Q 010515 99 GVEERGKCGIYGVNCPE------WIIGMEACN-ALGLHCVPLYDTL------------GAGAVEFIICHSGVSIAFVEEK 159 (508)
Q Consensus 99 gv~~gd~V~i~~~n~~~------~~~~~lA~~-~~G~~~vpl~~~~------------~~~~l~~~l~~~~~~~vi~~~~ 159 (508)
-+++||+|+|++|.+.- .+......+ ..|..++.-+... -.+++..++.+-.+++|++...
T Consensus 8 ~L~~GD~I~ivaPS~~~~~~~~~~~~~~~~~L~~~G~~v~~~~~~~~~~~~~ag~d~~Ra~dL~~a~~Dp~i~aI~~~rG 87 (331)
T 4e5s_A 8 KLKKGDEIRVISPSCSLSIVSTENRRLAVKRLTELGFHVTFSTHAEEIDRFASSSISSRVQDLHEAFRDPNVKAILTTLG 87 (331)
T ss_dssp CCCTTCEEEEECSSSCGGGSCHHHHHHHHHHHHHTTCEEEECTTTTCCCTTSSCCHHHHHHHHHHHHHCTTEEEEEESCC
T ss_pred CCCCcCEEEEEeCCCCccccCHHHHHHHHHHHHhCCCEEEECCchhcccCccCCCHHHHHHHHHHHhhCCCCCEEEEccc
Confidence 37899999999998752 222223223 3577766432111 1246667777778899998764
No 142
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Probab=22.30 E-value=2.3e+02 Score=26.82 Aligned_cols=56 Identities=18% Similarity=0.049 Sum_probs=36.8
Q ss_pred HHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCC-eeeeccCCCChHHHHHHHHhcCceEE
Q 010515 95 IRTCGVEERGKCGIYGVNCPEWIIGMEACNALGL-HCVPLYDTLGAGAVEFIICHSGVSIA 154 (508)
Q Consensus 95 L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~-~~vpl~~~~~~~~l~~~l~~~~~~~v 154 (508)
|...++++|++|+|...-..-..++.+|- ..|+ .++.++. +++.+ .+++..+++++
T Consensus 178 l~~~~~~~g~~VlV~GaG~vG~~aiqlAk-~~Ga~~Vi~~~~--~~~~~-~~a~~lGa~~i 234 (398)
T 1kol_A 178 AVTAGVGPGSTVYVAGAGPVGLAAAASAR-LLGAAVVIVGDL--NPARL-AHAKAQGFEIA 234 (398)
T ss_dssp HHHTTCCTTCEEEEECCSHHHHHHHHHHH-HTTCSEEEEEES--CHHHH-HHHHHTTCEEE
T ss_pred HHHcCCCCCCEEEEECCcHHHHHHHHHHH-HCCCCeEEEEcC--CHHHH-HHHHHcCCcEE
Confidence 44568999999999886556666666655 4687 4555544 34444 44577888743
No 143
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY crystallography, sulfhydrylase; HET: LLP; 1.55A {Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X* 3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Probab=22.19 E-value=4.2e+02 Score=24.05 Aligned_cols=64 Identities=13% Similarity=0.023 Sum_probs=43.2
Q ss_pred HHHcCC-CCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCC
Q 010515 95 IRTCGV-EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEK 159 (508)
Q Consensus 95 L~~~gv-~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~ 159 (508)
+.+.|. ++|+.|+.. ..+-.-..+.++|.+.|.-++.+-|...+..-...++..++++++++..
T Consensus 53 a~~~g~~~~~~~vv~~-ssGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~ 117 (316)
T 1y7l_A 53 AEKDGTLTKGKEIVDA-TSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGA 117 (316)
T ss_dssp HHHTTSSCTTCEEEES-CCSHHHHHHHHHHHHHTCCEEEEEETTSCHHHHHHHHHTTCEEEEECGG
T ss_pred HHHcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCC
Confidence 344454 666655544 3455666677778899987666555545556677888999999998754
No 144
>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0
Probab=21.86 E-value=4e+02 Score=24.10 Aligned_cols=73 Identities=12% Similarity=0.036 Sum_probs=44.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhh-------CC----eeeeccCC--CChHHHHHHHHh
Q 010515 82 KEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNAL-------GL----HCVPLYDT--LGAGAVEFIICH 148 (508)
Q Consensus 82 ~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~-------G~----~~vpl~~~--~~~~~l~~~l~~ 148 (508)
+++...+.-+...+++.|.+ .|+|.+.-+.|+.++.+-|..+ |. +.++++.. .+.++...+.+.
T Consensus 28 ~~i~~~v~~L~d~l~~~g~~---~vvvglSGGiDSal~a~La~~A~daLG~~~~~~~viav~~p~~~~~~~~dA~~~a~~ 104 (285)
T 3dpi_A 28 DEAERRIGFVADYLRTAGLR---ACVLGISGGIDSSTAGRLAQLAVERLRASGYDARFVAMRLPYGAQHDEADARRALAF 104 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTCC---EEEEECCSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCSCC---CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCC---cEEEEccCChhHHHHHHHHHHHHHHhcccCcccEEEEEEcCCCCHHHHHHHHHHHHH
Confidence 46667778888888888865 6888888899988775443332 32 34444432 223445555666
Q ss_pred cCc-eEEEEc
Q 010515 149 SGV-SIAFVE 157 (508)
Q Consensus 149 ~~~-~~vi~~ 157 (508)
.++ +..+++
T Consensus 105 lg~i~~~~i~ 114 (285)
T 3dpi_A 105 VRADETLTVD 114 (285)
T ss_dssp HCCSEEEECC
T ss_pred cCCCcEEEEE
Confidence 652 444443
No 145
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=21.74 E-value=1.7e+02 Score=23.31 Aligned_cols=49 Identities=10% Similarity=-0.082 Sum_probs=34.1
Q ss_pred cEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceE
Q 010515 104 GKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSI 153 (508)
Q Consensus 104 d~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 153 (508)
|.|.|..|. .....++-.|...|.-.+.+.+....+++....+..+.++
T Consensus 79 Dlvvi~vp~-~~~~~vv~~~~~~gi~~i~~~~g~~~~~l~~~a~~~Gi~v 127 (144)
T 2d59_A 79 EVVDLFVKP-KLTMEYVEQAIKKGAKVVWFQYNTYNREASKKADEAGLII 127 (144)
T ss_dssp SEEEECSCH-HHHHHHHHHHHHHTCSEEEECTTCCCHHHHHHHHHTTCEE
T ss_pred CEEEEEeCH-HHHHHHHHHHHHcCCCEEEECCCchHHHHHHHHHHcCCEE
Confidence 445554444 5555555677778877677777777888888888888774
No 146
>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}
Probab=21.71 E-value=3.7e+02 Score=24.74 Aligned_cols=77 Identities=13% Similarity=0.058 Sum_probs=47.9
Q ss_pred EeeHHHHHHHHHHHHHH---H-HHcCCCCCcEEEEEcCC-chhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCce
Q 010515 78 WKTYKEVYDLVIKVVNA---I-RTCGVEERGKCGIYGVN-CPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVS 152 (508)
Q Consensus 78 ~~Ty~el~~~~~~lA~~---L-~~~gv~~gd~V~i~~~n-~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~ 152 (508)
.+++.+.......++.. | ...++++|++|+|.... ++-..++.+|. ..|+.++.+..+ ++.+ ..++..+++
T Consensus 131 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gasg~iG~~~~~~a~-~~Ga~Vi~~~~~--~~~~-~~~~~~ga~ 206 (342)
T 4eye_A 131 QLDDAEAVALIANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAK-GMGAKVIAVVNR--TAAT-EFVKSVGAD 206 (342)
T ss_dssp TSCHHHHHHHTTHHHHHHHHHHTTSCCCTTCEEEESSTTSHHHHHHHHHHH-HTTCEEEEEESS--GGGH-HHHHHHTCS
T ss_pred CCCHHHHHHhhhHHHHHHHHHHHhcCCCCCCEEEEECCCCHHHHHHHHHHH-HcCCEEEEEeCC--HHHH-HHHHhcCCc
Confidence 46777765444443333 3 23578999999999884 45555555554 678876666552 3333 345567888
Q ss_pred EEEEcC
Q 010515 153 IAFVEE 158 (508)
Q Consensus 153 ~vi~~~ 158 (508)
.++...
T Consensus 207 ~v~~~~ 212 (342)
T 4eye_A 207 IVLPLE 212 (342)
T ss_dssp EEEESS
T ss_pred EEecCc
Confidence 777544
No 147
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=21.65 E-value=2.5e+02 Score=26.07 Aligned_cols=58 Identities=10% Similarity=0.012 Sum_probs=30.7
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeecc--C--CCChHHHHHHHHhcCceEEEEcC
Q 010515 100 VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLY--D--TLGAGAVEFIICHSGVSIAFVEE 158 (508)
Q Consensus 100 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~--~--~~~~~~l~~~l~~~~~~~vi~~~ 158 (508)
+++||.|++..+.... ....-++...|+.++.++ . ....+++...++..++++|+...
T Consensus 95 ~~~gd~vl~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 156 (393)
T 3kgw_A 95 LEPGDSFLTGTNGIWG-MRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVH 156 (393)
T ss_dssp CCTTCEEEEEESSHHH-HHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEES
T ss_pred CCCCCEEEEEeCCchh-HHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEec
Confidence 5677777766433211 112333445566544333 2 24567777777665666666553
No 148
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=21.33 E-value=3.3e+02 Score=25.40 Aligned_cols=58 Identities=7% Similarity=-0.088 Sum_probs=31.3
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccC--C--CChHHHHHHHHhcCceEEEEcC
Q 010515 100 VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYD--T--LGAGAVEFIICHSGVSIAFVEE 158 (508)
Q Consensus 100 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~--~--~~~~~l~~~l~~~~~~~vi~~~ 158 (508)
+++||.|++..+...... ..-++...|+.++.++. . ...+++...++..++++|+...
T Consensus 85 ~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 146 (411)
T 3nnk_A 85 IRPGDKVLVPVFGRFGHL-LCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQ 146 (411)
T ss_dssp CCTTCEEEEEECSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEES
T ss_pred cCCCCEEEEecCCchHHH-HHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeC
Confidence 567787776665332211 23334455665444332 2 2566777777655666666654
No 149
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}
Probab=21.27 E-value=2.2e+02 Score=26.55 Aligned_cols=75 Identities=11% Similarity=-0.038 Sum_probs=46.8
Q ss_pred EeeHHHHHHHHHHHH---HHH-HHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceE
Q 010515 78 WKTYKEVYDLVIKVV---NAI-RTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSI 153 (508)
Q Consensus 78 ~~Ty~el~~~~~~lA---~~L-~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~ 153 (508)
.+++.+......... ..| ...++++|++|+|......-..++.+|- ..|+.++.+.. +++.+. .++..+++.
T Consensus 161 ~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G~G~vG~~a~qla~-~~Ga~Vi~~~~--~~~~~~-~~~~lGa~~ 236 (363)
T 3uog_A 161 SLDAAEASTLPCAGLTAWFALVEKGHLRAGDRVVVQGTGGVALFGLQIAK-ATGAEVIVTSS--SREKLD-RAFALGADH 236 (363)
T ss_dssp TSCHHHHHTTTTHHHHHHHHHTTTTCCCTTCEEEEESSBHHHHHHHHHHH-HTTCEEEEEES--CHHHHH-HHHHHTCSE
T ss_pred CCCHHHHhhcccHHHHHHHHHHHhcCCCCCCEEEEECCCHHHHHHHHHHH-HcCCEEEEEec--CchhHH-HHHHcCCCE
Confidence 367777653322222 233 3458999999999984445555555554 67887666654 444444 367788887
Q ss_pred EEE
Q 010515 154 AFV 156 (508)
Q Consensus 154 vi~ 156 (508)
++.
T Consensus 237 vi~ 239 (363)
T 3uog_A 237 GIN 239 (363)
T ss_dssp EEE
T ss_pred EEc
Confidence 775
No 150
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=21.24 E-value=1.9e+02 Score=27.94 Aligned_cols=59 Identities=3% Similarity=0.020 Sum_probs=34.6
Q ss_pred CCCCcEEEEEcCCchhHHHHHH---------HHHhhCCeeeeccCC----CChHHHHHHHHh-cCceEEEEcC
Q 010515 100 VEERGKCGIYGVNCPEWIIGME---------ACNALGLHCVPLYDT----LGAGAVEFIICH-SGVSIAFVEE 158 (508)
Q Consensus 100 v~~gd~V~i~~~n~~~~~~~~l---------A~~~~G~~~vpl~~~----~~~~~l~~~l~~-~~~~~vi~~~ 158 (508)
+++||.|++...........++ .+...|+.+..++.. ...+++...++. -++++|++..
T Consensus 112 l~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~~~tklV~i~~ 184 (427)
T 3i16_A 112 LRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQR 184 (427)
T ss_dssp CCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTCTTEEEEEEEC
T ss_pred hCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCCCCCEEEEEEc
Confidence 5788887666512222222222 234557776666543 567778877764 4677777765
No 151
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=21.10 E-value=1.4e+02 Score=27.66 Aligned_cols=13 Identities=8% Similarity=0.511 Sum_probs=7.0
Q ss_pred HHHhcCceEEEEc
Q 010515 145 IICHSGVSIAFVE 157 (508)
Q Consensus 145 ~l~~~~~~~vi~~ 157 (508)
.+...+++++.++
T Consensus 107 ~~~~~g~~~~~v~ 119 (382)
T 4hvk_A 107 FLQKQGFEVEYIP 119 (382)
T ss_dssp HHHHTTCEEEEEC
T ss_pred HHHhcCCEEEEec
Confidence 3444566666554
No 152
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=21.00 E-value=3.7e+02 Score=24.68 Aligned_cols=57 Identities=4% Similarity=-0.060 Sum_probs=33.7
Q ss_pred CCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccC---C--CChHHHHHHHHhcCceEEEEcC
Q 010515 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYD---T--LGAGAVEFIICHSGVSIAFVEE 158 (508)
Q Consensus 101 ~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~---~--~~~~~l~~~l~~~~~~~vi~~~ 158 (508)
++||.|++..+....... .-++...|+.++.++. . ...+++...++..++++|+...
T Consensus 84 ~~gd~vlv~~~~~~~~~~-~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~ 145 (385)
T 2bkw_A 84 APNKNVLVVSTGTFSDRF-ADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTH 145 (385)
T ss_dssp CSCCEEEEECSSHHHHHH-HHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEES
T ss_pred CCCCeEEEEcCCcchHHH-HHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEc
Confidence 688988776443332221 2244566876655543 2 4677888888764667776543
No 153
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=20.97 E-value=1.4e+02 Score=27.84 Aligned_cols=32 Identities=9% Similarity=0.074 Sum_probs=13.8
Q ss_pred hCCeeeeccCCCChH-HHHHHHHhcCceEEEEc
Q 010515 126 LGLHCVPLYDTLGAG-AVEFIICHSGVSIAFVE 157 (508)
Q Consensus 126 ~G~~~vpl~~~~~~~-~l~~~l~~~~~~~vi~~ 157 (508)
-|-.++..++.++.- .....++..+.+++.++
T Consensus 87 ~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~ 119 (382)
T 4eb5_A 87 KGKHILVSAVEHMSVINPAKFLQKQGFEVEYIP 119 (382)
T ss_dssp GCCEEEEETTCCHHHHHHHHHHTTTTCEEEEEC
T ss_pred CCCEEEECCCcchHHHHHHHHHHhCCcEEEEec
Confidence 454444344443221 22233344566666554
No 154
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=20.95 E-value=2e+02 Score=22.69 Aligned_cols=57 Identities=7% Similarity=-0.111 Sum_probs=39.3
Q ss_pred CcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEEEEcCCCHH
Q 010515 103 RGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIAFVEEKKIP 162 (508)
Q Consensus 103 gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~vi~~~~~~~ 162 (508)
=|.|.+..| ......++..|...|.-.+.+.+....+++....+..+.++ .+..+..
T Consensus 70 vDlvii~vp-~~~v~~v~~~~~~~g~~~i~~~~~~~~~~l~~~a~~~Gi~~--igpnc~g 126 (138)
T 1y81_A 70 VDVIVFVVP-PKVGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVEY--SFGRCIM 126 (138)
T ss_dssp CCEEEECSC-HHHHHHHHHHHHHTTCCEEEECTTSCCHHHHHHHHHHTCEE--ECSCCHH
T ss_pred CCEEEEEeC-HHHHHHHHHHHHHcCCCEEEEcCccHHHHHHHHHHHCCCEE--EcCCcce
Confidence 466666666 55556666677778876677777777888888888888774 3444443
No 155
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=20.94 E-value=2.8e+02 Score=25.83 Aligned_cols=55 Identities=5% Similarity=-0.010 Sum_probs=33.2
Q ss_pred CCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCC-----CChHHHHHHHHhcCceEEEEc
Q 010515 99 GVEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDT-----LGAGAVEFIICHSGVSIAFVE 157 (508)
Q Consensus 99 gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~-----~~~~~l~~~l~~~~~~~vi~~ 157 (508)
++++||.|++..+...... .++...|+.++.++.. ...+++...++. ++++|+..
T Consensus 76 ~~~~g~~Vi~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~ 135 (390)
T 3b8x_A 76 RLKKGDEIIVPAVSWSTTY---YPLQQYGLRVKFVDIDINTLNIDIESLKEAVTD-STKAILTV 135 (390)
T ss_dssp SCCTTCEEEEESSSCHHHH---HHHHHTTCEEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEE
T ss_pred CCCCcCEEEECCCCcHHHH---HHHHHcCCEEEEEecCccccCcCHHHHHHHhCc-CCeEEEEE
Confidence 5788888877766544433 3455678766544432 356677666653 56666654
No 156
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=20.73 E-value=3.3e+02 Score=25.57 Aligned_cols=55 Identities=7% Similarity=0.070 Sum_probs=32.5
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccC-----CCChHHHHHHHHhc---Cce-EEEEc
Q 010515 100 VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYD-----TLGAGAVEFIICHS---GVS-IAFVE 157 (508)
Q Consensus 100 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~-----~~~~~~l~~~l~~~---~~~-~vi~~ 157 (508)
+++||.|++..|.-..+. -++...|+.+++++. ....+++...++.. +.+ ++++.
T Consensus 122 ~~~gd~Vl~~~p~~~~~~---~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~ 185 (413)
T 3t18_A 122 LDEGDPLICHDYYWAPYR---KICEEFGRNFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDRIASLIN 185 (413)
T ss_dssp CCSSCEEEEESSCCTHHH---HHHHHHTCEEEEECCBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred cCCCCEEEECCCCcccHH---HHHHHhCCeEEEeeccCCCCCcCHHHHHHHHHHHhhcCCCEEEEEe
Confidence 567888887766544333 334556776665543 44667777777653 555 44443
No 157
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=20.73 E-value=1.8e+02 Score=23.10 Aligned_cols=50 Identities=10% Similarity=0.035 Sum_probs=33.6
Q ss_pred cEEEEEcCCchhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCceEE
Q 010515 104 GKCGIYGVNCPEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVSIA 154 (508)
Q Consensus 104 d~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~~v 154 (508)
|.|.+..| ......++..|...|.-.+.+.+....+++...++..+.+++
T Consensus 72 Dlvii~vp-~~~v~~v~~~~~~~g~~~i~i~~~~~~~~l~~~a~~~Gi~~i 121 (145)
T 2duw_A 72 DMVDVFRN-SEAAWGVAQEAIAIGAKTLWLQLGVINEQAAVLAREAGLSVV 121 (145)
T ss_dssp SEEECCSC-STHHHHHHHHHHHHTCCEEECCTTCCCHHHHHHHHTTTCEEE
T ss_pred CEEEEEeC-HHHHHHHHHHHHHcCCCEEEEcCChHHHHHHHHHHHcCCEEE
Confidence 66666666 445555555677777666666777677888888888777653
No 158
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=20.70 E-value=2.6e+02 Score=25.72 Aligned_cols=58 Identities=10% Similarity=-0.008 Sum_probs=35.7
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccCC----CChHHHHHHHHhcCceEEEEcC
Q 010515 100 VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYDT----LGAGAVEFIICHSGVSIAFVEE 158 (508)
Q Consensus 100 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~~----~~~~~l~~~l~~~~~~~vi~~~ 158 (508)
+++||.|++..+...- ....-.+...|+.++.++.. ...+++...++..++++|+...
T Consensus 74 ~~~gd~vi~~~~~~~~-~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~ 135 (384)
T 3zrp_A 74 LKPNDKILVVSNGVFG-DRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTH 135 (384)
T ss_dssp CCTTCEEEEECSSHHH-HHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEES
T ss_pred cCCCCEEEEecCCcch-HHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeC
Confidence 6789988776553321 11222334567766555432 4778888888876777777654
No 159
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=20.69 E-value=3.1e+02 Score=25.54 Aligned_cols=53 Identities=13% Similarity=0.133 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCchhHHHHHHHHHhhCCeeeeccC--C-----CChHHHHHHHHhcCceEEEE
Q 010515 101 EERGKCGIYGVNCPEWIIGMEACNALGLHCVPLYD--T-----LGAGAVEFIICHSGVSIAFV 156 (508)
Q Consensus 101 ~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~~--~-----~~~~~l~~~l~~~~~~~vi~ 156 (508)
++||.|++..+.-..+. .++...|+.++.++. . ...+++...++..++++|+.
T Consensus 109 ~~gd~vl~~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l 168 (390)
T 1d2f_A 109 ETGEGVVIHTPAYDAFY---KAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLL 168 (390)
T ss_dssp CTTCEEEEEESCCHHHH---HHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEE
T ss_pred CCCCEEEEcCCCcHHHH---HHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEE
Confidence 45666655544333322 223344554433321 1 34555555554434555443
No 160
>1b73_A Glutamate racemase; isomerase; 2.30A {Aquifex pyrophilus} SCOP: c.78.2.1 c.78.2.1 PDB: 1b74_A*
Probab=20.62 E-value=1.3e+02 Score=26.72 Aligned_cols=60 Identities=12% Similarity=0.141 Sum_probs=43.0
Q ss_pred HHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHHcCCCCCcEEEEEcCCchh
Q 010515 49 VFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRTCGVEERGKCGIYGVNCPE 115 (508)
Q Consensus 49 ~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~~gv~~gd~V~i~~~n~~~ 115 (508)
+++.-.+..|+...+... |...-.+-..+..++.+++.+.+..|.+.|+ ...++.-|+..
T Consensus 15 v~~~l~~~~P~~~~iy~~---D~~~~pyG~~s~~~i~~~~~~~~~~L~~~g~----d~iviaCnTa~ 74 (254)
T 1b73_A 15 VLKAIRNRYRKVDIVYLG---DTARVPYGIRSKDTIIRYSLECAGFLKDKGV----DIIVVACNTAS 74 (254)
T ss_dssp HHHHHHHHSTTCEEEEEE---CTTTCCCTTSCHHHHHHHHHHHHHHHHTTTC----SEEEECCHHHH
T ss_pred HHHHHHHhCCCCcEEEee---cCCCCCCCcCCHHHHHHHHHHHHHHHHHCCC----CEEEEeCchhh
Confidence 556666678988877766 6554444467899999999999999987765 34555555554
No 161
>2jfn_A Glutamate racemase; cell WALL, isomerase, cell shape, UDP- murnac-Ala, peptidoglycan biosynthesis, peptidoglycan synthesis; HET: GLU UMA; 1.9A {Escherichia coli}
Probab=20.48 E-value=3.4e+02 Score=24.42 Aligned_cols=64 Identities=16% Similarity=0.111 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhCCCCCceeEEeeccCCCCceEEeeHHHHHHHHHHHHHHHHH-cCCCCCcEEEEEcCCchhH
Q 010515 46 CWDVFRMAVERNPNNRMLGQREIVDGKAGKYVWKTYKEVYDLVIKVVNAIRT-CGVEERGKCGIYGVNCPEW 116 (508)
Q Consensus 46 l~~~l~~~a~~~pd~~al~~~~~~~~~~~~~~~~Ty~el~~~~~~lA~~L~~-~gv~~gd~V~i~~~n~~~~ 116 (508)
-.++++...+..|+...+... |...-.+-..|-.++.+++..+...|.+ .|++ ..++.-|+...
T Consensus 33 Gltv~~~i~~~lP~~~~iy~~---D~~~~PyG~~s~~~i~~~~~~i~~~ll~~~g~d----~IviaCNTas~ 97 (285)
T 2jfn_A 33 GLSVYDEIRHLLPDLHYIYAF---DNVAFPYGEKSEAFIVERVVAIVTAVQERYPLA----LAVVACNTAST 97 (285)
T ss_dssp HHHHHHHHHHHSTTSEEEEEE---CTTTCCTTTSCHHHHHHHHHHHHHHHHHHSCCS----EEEECCHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEee---ccCCCCCccCCHHHHHHHHHHHHHHHHHhCCCC----EEEEECccccH
Confidence 456777777788998888776 6655455557899999999999998765 5653 55555566553
No 162
>1ofu_X SULA, hypothetical protein PA3008; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=20.47 E-value=3e+02 Score=21.17 Aligned_cols=53 Identities=11% Similarity=0.014 Sum_probs=38.4
Q ss_pred HHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeeee--ccCCCChHHHHH
Q 010515 92 VNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCVP--LYDTLGAGAVEF 144 (508)
Q Consensus 92 A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vp--l~~~~~~~~l~~ 144 (508)
+.+|.+.|+.+...+.+...+..+.+.++-=+++.|...+. -.+.++..+.++
T Consensus 47 ~~~L~~~Gl~~~rll~v~~~~~~d~lwa~EqaLrsg~~~aVl~wl~~l~~~~~RR 101 (119)
T 1ofu_X 47 HEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARKQ 101 (119)
T ss_dssp HHHHHHTTCCTTSEEEECCSSHHHHHHHHHHHHHHTCEEEEEECCSSCCHHHHHH
T ss_pred HHHHHHcCCChHHEEEEECCCcHHHHHHHHHHHhcCCccEEEECCCcCChHHHHH
Confidence 66788899988877777788888998888888888874332 234566655443
No 163
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}
Probab=20.39 E-value=3.6e+02 Score=24.92 Aligned_cols=76 Identities=13% Similarity=-0.020 Sum_probs=47.2
Q ss_pred EeeHHHHHHHHHHHHHH---H-HHcCCCCCcEEEEEcCCc-hhHHHHHHHHHhhCCeeeeccCCCChHHHHHHHHhcCce
Q 010515 78 WKTYKEVYDLVIKVVNA---I-RTCGVEERGKCGIYGVNC-PEWIIGMEACNALGLHCVPLYDTLGAGAVEFIICHSGVS 152 (508)
Q Consensus 78 ~~Ty~el~~~~~~lA~~---L-~~~gv~~gd~V~i~~~n~-~~~~~~~lA~~~~G~~~vpl~~~~~~~~l~~~l~~~~~~ 152 (508)
.+++.+.......++.. | ...++++|++|+|....+ +-..++.+| ...|+.++.+.. +++.+ ..++..+++
T Consensus 139 ~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~VlV~Gg~g~iG~~~~~~a-~~~Ga~Vi~~~~--~~~~~-~~~~~lGa~ 214 (353)
T 4dup_A 139 GYDAVKAAALPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLA-RAFGAEVYATAG--STGKC-EACERLGAK 214 (353)
T ss_dssp TCCHHHHHTSHHHHHHHHHHHTTTTCCCTTCEEEESSTTSHHHHHHHHHH-HHTTCEEEEEES--SHHHH-HHHHHHTCS
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHhcCCCCCCEEEEEcCCCHHHHHHHHHH-HHcCCEEEEEeC--CHHHH-HHHHhcCCC
Confidence 36777765444444333 3 235899999999995544 555555555 467887666654 44444 345567887
Q ss_pred EEEEc
Q 010515 153 IAFVE 157 (508)
Q Consensus 153 ~vi~~ 157 (508)
.++..
T Consensus 215 ~~~~~ 219 (353)
T 4dup_A 215 RGINY 219 (353)
T ss_dssp EEEET
T ss_pred EEEeC
Confidence 77643
No 164
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=20.28 E-value=3.8e+02 Score=26.15 Aligned_cols=70 Identities=9% Similarity=-0.026 Sum_probs=50.1
Q ss_pred HHHHHHHHcC-CCCCcEEEEEcCCchhHHHHHHHHHh----hC--CeeeeccCCCC-h------HHHHHHHHhcCceEEE
Q 010515 90 KVVNAIRTCG-VEERGKCGIYGVNCPEWIIGMEACNA----LG--LHCVPLYDTLG-A------GAVEFIICHSGVSIAF 155 (508)
Q Consensus 90 ~lA~~L~~~g-v~~gd~V~i~~~n~~~~~~~~lA~~~----~G--~~~vpl~~~~~-~------~~l~~~l~~~~~~~vi 155 (508)
++.+.+.+.+ +.++++|++.+.-+.|+.+++..+.. .| ..++.++..+. . +.+..+.+..+..+.+
T Consensus 4 kv~~~i~~~~l~~~~~~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg~~s~~~~~~v~~~~~~lgi~~~v 83 (464)
T 3a2k_A 4 KVRAFIHRHQLLSEGAAVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRGRESEEEMEFVKRFCVERRILCET 83 (464)
T ss_dssp HHHHHHHHTCSSSCSSBEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCTHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCCCCCEEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCccccHHHHHHHHHHHHHcCCcEEE
Confidence 3555666655 58899999999999999988777766 34 45667777775 2 2355667777888777
Q ss_pred EcCC
Q 010515 156 VEEK 159 (508)
Q Consensus 156 ~~~~ 159 (508)
.+-+
T Consensus 84 ~~~~ 87 (464)
T 3a2k_A 84 AQID 87 (464)
T ss_dssp EECC
T ss_pred EEec
Confidence 6654
No 165
>1oft_A SULA, hypothetical protein PA3008; bacterial cell division inhibitor, FTSZ, SULA protein; 2.9A {Pseudomonas aeruginosa} SCOP: c.37.1.22
Probab=20.27 E-value=2.9e+02 Score=22.60 Aligned_cols=52 Identities=12% Similarity=0.045 Sum_probs=32.7
Q ss_pred HHHHHHcCCCCCcEEEEEcCCchhHHHHHHHHHhhCCeee--eccCCCChHHHH
Q 010515 92 VNAIRTCGVEERGKCGIYGVNCPEWIIGMEACNALGLHCV--PLYDTLGAGAVE 143 (508)
Q Consensus 92 A~~L~~~gv~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~v--pl~~~~~~~~l~ 143 (508)
+.+|.+.|+.+...+.|...+..|.+.++-=|++.|...+ ...+.++..+.+
T Consensus 89 ~~~L~~~Gl~~~rll~v~~~~~~daLwa~EqALrsG~~~aVl~Wl~~l~~~~~R 142 (161)
T 1oft_A 89 HEWLRRAGLNRERILLLQAKDNAAALALSCEALRLGRSHTVVSWLEPLSRAARK 142 (161)
T ss_dssp HHHHHHTTCCGGGEEEECCSSTTHHHHHHHHHHHTTCEEEEEECCSSCCHHHHH
T ss_pred HHHHHHcCCCHHHEEEEECCChHHHHHHHHHHHhcCCccEEEECCCcCChHHHH
Confidence 5567777787666666666677777777777777776322 223445554443
No 166
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=20.17 E-value=3.7e+02 Score=24.87 Aligned_cols=57 Identities=11% Similarity=-0.015 Sum_probs=30.6
Q ss_pred CCCCcEEEEEcCCchhHHHHHHHHHhhCCeeeecc--C--CCChHHHHHHHHhcCceEEEEc
Q 010515 100 VEERGKCGIYGVNCPEWIIGMEACNALGLHCVPLY--D--TLGAGAVEFIICHSGVSIAFVE 157 (508)
Q Consensus 100 v~~gd~V~i~~~n~~~~~~~~lA~~~~G~~~vpl~--~--~~~~~~l~~~l~~~~~~~vi~~ 157 (508)
+++||.|++..+...... ..-.+...|+.++.++ + ....+++...++..++++|+..
T Consensus 91 ~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~ 151 (393)
T 2huf_A 91 LEDGDVILIGHTGHWGDR-SADMATRYGADVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLT 151 (393)
T ss_dssp CCTTCEEEEEESSHHHHH-HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEE
T ss_pred hCCCCEEEEECCCcchHH-HHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEE
Confidence 457887777665443321 1112334566554443 2 2456777777765456666654
Done!