BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010516
(508 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1HR6|A Chain A, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|C Chain C, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|E Chain E, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|G Chain G, Yeast Mitochondrial Processing Peptidase
pdb|1HR7|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|A Chain A, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|C Chain C, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|E Chain E, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|G Chain G, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 475
Score = 207 bits (528), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 141/444 (31%), Positives = 228/444 (51%), Gaps = 32/444 (7%)
Query: 80 KISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR 139
K+S+L NG+K+A+ + +++ LY+ GS +E G TH+L+R+AF+ST +
Sbjct: 7 KLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRA 66
Query: 140 IVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKV 199
+ +E +GGN Q ++SRE + Y V +M++L+ + VR P + E+ EQ
Sbjct: 67 MAETLELLGGNYQCTSSRENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSA 126
Query: 200 KSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPR 258
+ EI EV P+ +L E +H+A YSG L +PL+ P I ++ L ++ + YT
Sbjct: 127 EYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPRGLIPSISKYYLLDYRNKFYTPEN 186
Query: 259 MVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPK-SVYTGGDYRCQADS-------GLTH 310
V A GV H++ + + L D S HP K + YTGG+ C + L H
Sbjct: 187 TVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGE-SCIPPAPVFGNLPELFH 245
Query: 311 FVLAFE-LPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQS 369
+ FE LP D L LQ LL MYSRLY VLN++ V++
Sbjct: 246 IQIGFEGLP---IDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVEN 302
Query: 370 FSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGE--VDQVQLDRAKQSTK 427
AF++ Y+ SG+FGI + +A+++ A+++ + + + + ++ RAK K
Sbjct: 303 CVAFNHSYSDSGIFGISLSCIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLK 362
Query: 428 SAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMA 487
S++LMNLES++V ED+GRQVL +G + PV + +E + DI+ VA+ + + + A
Sbjct: 363 SSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIEDLKPDDISRVAEMIFTGNVNNA 422
Query: 488 ----------------SYGDVINV 495
S+GDV NV
Sbjct: 423 GNGKGRATVVMQGDRGSFGDVENV 446
>pdb|3CWB|B Chain B, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|O Chain O, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|B Chain B, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|O Chain O, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|O Chain O, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|O Chain O, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|B Chain B, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|O Chain O, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|B Chain B, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|O Chain O, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|B Chain B, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|O Chain O, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|B Chain B, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|O Chain O, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|B Chain B, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|O Chain O, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|B Chain B, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|O Chain O, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|B Chain B, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|O Chain O, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|B Chain B, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|O Chain O, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|B Chain B, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|O Chain O, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 441
Score = 203 bits (517), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 132/420 (31%), Positives = 213/420 (50%), Gaps = 7/420 (1%)
Query: 80 KISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR 139
+I+ LPNG+ IAS + SP + I +++ GS YE+ + GT HLL + +T+ S R
Sbjct: 27 EITKLPNGLIIASLENFSPASRIGVFIKAGSRYETTANLGTAHLLRLASPLTTKGASSFR 86
Query: 140 IVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKV 199
I R +EA+GG++ ++RE+M Y + L+ +V ++E L++ P F WEV + ++
Sbjct: 87 ITRGIEAVGGSLSVYSTREKMTYCVECLRDHVDTVMEYLLNVTTAPEFRPWEVTDLQPQL 146
Query: 200 KSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRM 259
K + + +PQ +LE +H+A Y ALANPL P+ I ++ S L FV N+T RM
Sbjct: 147 KVDKAVAFQSPQVGVLENLHAAAYKTALANPLYCPDYRIGKITSEQLHHFVQNNFTSARM 206
Query: 260 VLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGLTHFVLAFELPG 319
L GV+H L VAE L ++ S K+ Y GG+ R Q L H + E G
Sbjct: 207 ALVGIGVKHSDLKQVAEQFL-NIRSGAGTSSAKATYWGGEIREQNGHSLVHAAVVTE--G 263
Query: 320 GWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNH 379
+A +VLQ +L + S+LY+ V Q SAF+ Y+
Sbjct: 264 AAVGSAEANAFSVLQHVL---GAGPLIKRGSSVTSKLYQGVAKATTQPFDASAFNVNYSD 320
Query: 380 SGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMV 439
SG+FG + + + I A +L A G V + + +AK K+ LM++E+
Sbjct: 321 SGLFGFYTISQAAHAGEVIRAAMNQL-KAAAQGGVTEEDVTKAKNQLKATYLMSVETAQG 379
Query: 440 VSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYD 499
+ +IG + L G + ++ VT+ D+ + A+K +S +MA+ GD+ + P D
Sbjct: 380 LLNEIGSEALLSGTHTAPSVVAQKIDSVTSADVVNAAKKFVSGKKSMAASGDLGSTPFLD 439
>pdb|3BCC|B Chain B, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|B Chain B, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 196 bits (499), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 131/426 (30%), Positives = 214/426 (50%), Gaps = 11/426 (2%)
Query: 76 PGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR 135
P +I+ LPNG+ IAS + SP ++I +++ GS YE+ + GT+HLL + +T+
Sbjct: 4 PQDLEITKLPNGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLLRLASSLTTKGA 63
Query: 136 SHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQ 195
S +I R +EA+GG + ++RE M Y+ + L+ V ++E L++ P F WEV +
Sbjct: 64 SSFKITRGIEAVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWEVADL 123
Query: 196 LTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYT 255
++K + + NPQ+ ++E +H+A Y ALA+ L P+ I ++ S L +FV ++T
Sbjct: 124 QPQLKIDKAVAFQNPQTHVIENLHAAAYRNALADSLYCPDYRIGKVTSVELHDFVQNHFT 183
Query: 256 GPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGLTHFVLAF 315
RM L GV H L +VAE LL+ + K+ Y GG+ R Q L H +
Sbjct: 184 SARMALVGLGVSHPVLKNVAEQLLNIRGGL-GLSGAKAKYRGGEIREQNGDSLVHAAIVA 242
Query: 316 ELP--GGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAF 373
E GG +A +VLQ +L S LY+ V Q SAF
Sbjct: 243 ESAAIGG----AEANAFSVLQHVLGANPHVKRGLNAT---SSLYQAVAKGVHQPFDVSAF 295
Query: 374 SNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMN 433
+ Y+ SG+FG + + + + I A ++ ++A G V + AK K+ LM+
Sbjct: 296 NASYSDSGLFGFYTISQAAYAGQVIKAAYNQVKTIAQ-GNVSNENVQAAKNKLKAKYLMS 354
Query: 434 LESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVI 493
+ES E++G Q L G P L+ ++ V D+ A+K +S +MA+ G++
Sbjct: 355 VESSEGFLEEVGSQALAAGSYNPPSTVLQQIDAVADADVIKAAKKFVSRQKSMAASGNLG 414
Query: 494 NVPSYD 499
+ P D
Sbjct: 415 HTPFVD 420
>pdb|1BCC|B Chain B, Cytochrome Bc1 Complex From Chicken
Length = 422
Score = 195 bits (496), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 130/427 (30%), Positives = 215/427 (50%), Gaps = 13/427 (3%)
Query: 76 PGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR 135
P +I+ LPNG+ IAS + SP ++I +++ GS YE+ + GT+HLL + +T+
Sbjct: 4 PQDLEITKLPNGLVIASLENYSPGSTIGVFIKAGSRYENSSNLGTSHLLRLASSLTTKGA 63
Query: 136 SHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQ 195
S +I R +EA+GG + ++RE M Y+ + L+ V ++E L++ P F WEV +
Sbjct: 64 SSFKITRGIEAVGGKLSVESTRENMAYTVECLRDDVEILMEFLLNVTTAPEFRPWEVADL 123
Query: 196 LTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYT 255
++K + + NPQ+ ++E +H+A Y ALA+ L P+ I ++ S L +FV ++T
Sbjct: 124 QPQLKIDKAVAFQNPQTHVIENLHAAAYRNALADSLYCPDYRIGKVTSVELHDFVQNHFT 183
Query: 256 GPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGLTHFVLAF 315
RM L GV H L +VAE LL+ + K+ Y GG+ R Q L H +
Sbjct: 184 SARMALVGLGVSHPVLKNVAEQLLNIRGGL-GLSGAKAKYRGGEIREQNGDSLVHAAIVA 242
Query: 316 ELP--GGWHKDKDAMTLTVLQMLLXXX-XXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSA 372
E GG +A +VLQ +L +Y + + V N F SA
Sbjct: 243 ESAAIGG----AEANAFSVLQHVLGANPHVKRGLNATSSLYQAVAKGVHNPF----DVSA 294
Query: 373 FSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM 432
F+ Y+ SG+FG + + + + I A ++ ++A G V + AK K+ LM
Sbjct: 295 FNASYSDSGLFGFYTISQAAYAGQVIKAAYNQVKTIAQ-GNVSNENVQAAKNKLKAKYLM 353
Query: 433 NLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDV 492
++ES E++G Q L G P L+ ++ V D+ A+K +S +MA+ G++
Sbjct: 354 SVESSEGFLEEVGSQALAAGSYNPPSTVLQQIDAVADADVIKAAKKFVSRQKSMAASGNL 413
Query: 493 INVPSYD 499
+ P D
Sbjct: 414 GHTPFVD 420
>pdb|1BCC|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 446
Score = 187 bits (475), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 129/444 (29%), Positives = 219/444 (49%), Gaps = 35/444 (7%)
Query: 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH 137
+T++S L NGV++ASE S P ++ +++ GS YES + G + LE +AF+ T+NR
Sbjct: 13 ETQVSQLDNGVRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFLEHLAFKGTKNRPQ 72
Query: 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLT 197
+ +EVE++G ++ A +SRE Y AL VP+ VELL D V+N D ++ ++
Sbjct: 73 NALEKEVESMGAHLNAYSSREHTAYYIKALSKDVPKAVELLADIVQNCSLEDSQIEKERD 132
Query: 198 KVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTG 256
+ E+ E + + ++ +H+ + G LA + P I +L+ L E+++ +YT
Sbjct: 133 VIVRELQENDTSMREVVFNYLHATAFQGTGLAQSVEGPSENIRKLSRADLTEYLSTHYTA 192
Query: 257 PRMVLAAS-GVEHDQLVSVAEPLLSDLPSIHPREE----PKSVYTGGDYRCQADS-GLTH 310
PRMVLAA+ GVEH QL+ +A+ +P + + K +TG R + D L H
Sbjct: 193 PRMVLAAAGGVEHQQLLELAQKHFGGVPFTYDDDAVPTLSKCRFTGSQIRHREDGLPLAH 252
Query: 311 FVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQV--- 367
+A E PG H D L LQ+ Y R Y L+ +
Sbjct: 253 VAIAVEGPGWAHPD-----LVALQV----------ANAIIGHYDRTYGGGLHSSSPLASI 297
Query: 368 -------QSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLD 420
QSF FS Y+ +G+FG + + + + + + T + + ++
Sbjct: 298 AVTNKLCQSFQTFSICYSETGLFGFYFVCDRMSIDDMMFVLQGQWMRLCT--SISESEVL 355
Query: 421 RAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLL 480
R K ++A++ +L+ V EDIGR++LTYG R P+E + + + V A+ + V K +
Sbjct: 356 RGKNFLRNALVSHLDGTTPVCEDIGRELLTYGRRIPLEEWEERLAEVDARMVREVCSKYI 415
Query: 481 SSPL-TMASYGDVINVPSYDAVSS 503
+A G + +P Y+ + S
Sbjct: 416 YDQCPAVAGPGPIEQLPDYNRIRS 439
>pdb|1QCR|B Chain B, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 423
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 124/425 (29%), Positives = 207/425 (48%), Gaps = 7/425 (1%)
Query: 75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRN 134
P + + LPNG+ IAS + +P + I L++ GS YE+ + GT+HLL + +T+
Sbjct: 4 HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKG 63
Query: 135 RSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNE 194
S +I R +EA+GG + +++RE M Y+ + L+ V ++E L++ P F WEV
Sbjct: 64 ASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAA 123
Query: 195 QLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENY 254
+++ + + NPQ+ ++E +H+A Y ALAN L P+ I ++ L ++V ++
Sbjct: 124 LQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHF 183
Query: 255 TGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGLTHFVLA 314
T RM L GV H L VAE L+ + K+ Y GG+ R Q L H L
Sbjct: 184 TSARMALIGLGVSHPVLKQVAEQFLNIRGGL-GLSGAKAKYHGGEIREQNGDSLVHAALV 242
Query: 315 FELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFS 374
E + +A +VLQ +L S LY+ V Q SAF+
Sbjct: 243 AESAAIGSAEANA--FSVLQHVLGAGPHVKRGSNAT---SSLYQAVAKGVHQPFDVSAFN 297
Query: 375 NIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNL 434
Y+ SG+FG + + I A ++ ++A G + + AK K+ LM++
Sbjct: 298 ASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQ-GNLSNPDVQAAKNKLKAGYLMSV 356
Query: 435 ESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVIN 494
ES +++G Q L G P L+ ++ V D+ + A+K +S +MA+ G++ +
Sbjct: 357 ESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVSGRKSMAASGNLGH 416
Query: 495 VPSYD 499
P D
Sbjct: 417 TPFID 421
>pdb|1SQB|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 453
Score = 184 bits (468), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 124/425 (29%), Positives = 207/425 (48%), Gaps = 7/425 (1%)
Query: 75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRN 134
P + + LPNG+ IAS + +P + I L++ GS YE+ + GT+HLL + +T+
Sbjct: 34 HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKG 93
Query: 135 RSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNE 194
S +I R +EA+GG + +++RE M Y+ + L+ V ++E L++ P F WEV
Sbjct: 94 ASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAA 153
Query: 195 QLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENY 254
+++ + + NPQ+ ++E +H+A Y ALAN L P+ I ++ L ++V ++
Sbjct: 154 LQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHF 213
Query: 255 TGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGLTHFVLA 314
T RM L GV H L VAE L+ + K+ Y GG+ R Q L H L
Sbjct: 214 TSARMALIGLGVSHPVLKQVAEQFLNIRGGL-GLSGAKAKYHGGEIREQNGDSLVHAALV 272
Query: 315 FELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFS 374
E + +A +VLQ +L S LY+ V Q SAF+
Sbjct: 273 AESAAIGSAEANA--FSVLQHVLGAGPHVKRGSNAT---SSLYQAVAKGVHQPFDVSAFN 327
Query: 375 NIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNL 434
Y+ SG+FG + + I A ++ ++A G + + AK K+ LM++
Sbjct: 328 ASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQ-GNLSNPDVQAAKNKLKAGYLMSV 386
Query: 435 ESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVIN 494
ES +++G Q L G P L+ ++ V D+ + A+K +S +MA+ G++ +
Sbjct: 387 ESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVSGRKSMAASGNLGH 446
Query: 495 VPSYD 499
P D
Sbjct: 447 TPFID 451
>pdb|1BGY|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|N Chain N, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|B Chain B, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|B Chain B, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|B Chain B, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|B Chain B, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|B Chain B, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|O Chain O, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|B Chain B, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|B Chain B, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|B Chain B, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|BB Chain b, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 439
Score = 184 bits (468), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 124/425 (29%), Positives = 206/425 (48%), Gaps = 7/425 (1%)
Query: 75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRN 134
P + + LPNG+ IAS + +P + I L++ GS YE+ + GT+HLL + +T+
Sbjct: 20 HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKG 79
Query: 135 RSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNE 194
S +I R +EA+GG + +++RE M Y+ + L+ V ++E L++ P F WEV
Sbjct: 80 ASSFKITRGIEAVGGKLSVTSTRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAA 139
Query: 195 QLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENY 254
+++ + + NPQ+ ++E +H+A Y ALAN L P+ I ++ L ++V ++
Sbjct: 140 LQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCPDYRIGKVTPVELHDYVQNHF 199
Query: 255 TGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGLTHFVLA 314
T RM L GV H L VAE L+ + K+ Y GG+ R Q L H L
Sbjct: 200 TSARMALIGLGVSHPVLKQVAEQFLNIRGGL-GLSGAKAKYHGGEIREQNGDSLVHAALV 258
Query: 315 FELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFS 374
E +A +VLQ +L S LY+ V Q SAF+
Sbjct: 259 AE--SAAIGSAEANAFSVLQHVLGAGPHVKRGSNAT---SSLYQAVAKGVHQPFDVSAFN 313
Query: 375 NIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNL 434
Y+ SG+FG + + I A ++ ++A G + + AK K+ LM++
Sbjct: 314 ASYSDSGLFGFYTISQAASAGDVIKAAYNQVKTIAQ-GNLSNPDVQAAKNKLKAGYLMSV 372
Query: 435 ESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVIN 494
ES +++G Q L G P L+ ++ V D+ + A+K +S +MA+ G++ +
Sbjct: 373 ESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVINAAKKFVSGRKSMAASGNLGH 432
Query: 495 VPSYD 499
P D
Sbjct: 433 TPFID 437
>pdb|1QCR|A Chain A, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 446
Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 118/435 (27%), Positives = 208/435 (47%), Gaps = 17/435 (3%)
Query: 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH 137
+T++S L NG+++ASE S P ++ +++ GS YES + G + +E +AF+ T+NR
Sbjct: 13 ETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG 72
Query: 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLT 197
+ +EVE++G ++ A ++RE Y AL +P+ VELL D V+N D ++ ++
Sbjct: 73 NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERD 132
Query: 198 KVKSEISEVSNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAENYTG 256
+ E+ E + + ++ +H+ + G LA + P + +L+ L E+++ +Y
Sbjct: 133 VILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKA 192
Query: 257 PRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPKSV----YTGGDYRCQADSGL--T 309
PRMVLAA+G +EH QL+ +A+ S L + + ++ +TG C + GL
Sbjct: 193 PRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQI-CHREDGLPLA 251
Query: 310 HFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQS 369
H +A E PG H D A LQ+ S + QS
Sbjct: 252 HVAIAVEGPGWAHPDNVA-----LQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQS 306
Query: 370 FSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSA 429
F F+ Y +G+ G + + + + + + T +V R K ++A
Sbjct: 307 FQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVL--RGKNLLRNA 364
Query: 430 ILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPL-TMAS 488
++ +L+ V EDIGR +LTYG R P+ + + V A+ + V K +A
Sbjct: 365 LVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAG 424
Query: 489 YGDVINVPSYDAVSS 503
+G V +P Y+ + S
Sbjct: 425 FGPVEQLPDYNRIRS 439
>pdb|1SQB|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|1SQP|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
Length = 480
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/435 (26%), Positives = 208/435 (47%), Gaps = 17/435 (3%)
Query: 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH 137
+T++S L NG+++ASE S P ++ +++ GS YES + G + +E +AF+ T+NR
Sbjct: 47 ETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG 106
Query: 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLT 197
+ +EVE++G ++ A ++RE Y AL +P+ VELL D V+N D ++ ++
Sbjct: 107 NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERD 166
Query: 198 KVKSEISEVSNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAENYTG 256
+ E+ E + + ++ +H+ + G LA + P + +L+ L E+++ +Y
Sbjct: 167 VILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKA 226
Query: 257 PRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPKSV----YTGGDYRCQADSGL--T 309
PRMVLAA+G +EH QL+ +A+ S L + + ++ +TG C + GL
Sbjct: 227 PRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQI-CHREDGLPLA 285
Query: 310 HFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQS 369
H +A E PG H D A LQ+ S + QS
Sbjct: 286 HVAIAVEGPGWAHPDNVA-----LQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQS 340
Query: 370 FSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSA 429
F F+ Y +G+ G + + + + + + T +V R K ++A
Sbjct: 341 FQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVL--RGKNLLRNA 398
Query: 430 ILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPL-TMAS 488
++ +L+ V EDIGR +LTYG R P+ + + V A+ + V K +A
Sbjct: 399 LVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAG 458
Query: 489 YGDVINVPSYDAVSS 503
+G + +P Y+ + S
Sbjct: 459 FGPIEQLPDYNRIRS 473
>pdb|1BGY|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|M Chain M, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|A Chain A, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|A Chain A, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|A Chain A, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|A Chain A, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|2A06|A Chain A, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|N Chain N, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQQ|A Chain A, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|A Chain A, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|A Chain A, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|AA Chain a, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 446
Score = 170 bits (430), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 117/435 (26%), Positives = 208/435 (47%), Gaps = 17/435 (3%)
Query: 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH 137
+T++S L NG+++ASE S P ++ +++ GS YES + G + +E +AF+ T+NR
Sbjct: 13 ETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPG 72
Query: 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLT 197
+ +EVE++G ++ A ++RE Y AL +P+ VELL D V+N D ++ ++
Sbjct: 73 NALEKEVESMGAHLNAYSTREHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERD 132
Query: 198 KVKSEISEVSNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAENYTG 256
+ E+ E + + ++ +H+ + G LA + P + +L+ L E+++ +Y
Sbjct: 133 VILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPSENVRKLSRADLTEYLSRHYKA 192
Query: 257 PRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPKSV----YTGGDYRCQADSGL--T 309
PRMVLAA+G +EH QL+ +A+ S L + + ++ +TG C + GL
Sbjct: 193 PRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQI-CHREDGLPLA 251
Query: 310 HFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQS 369
H +A E PG H D A LQ+ S + QS
Sbjct: 252 HVAIAVEGPGWAHPDNVA-----LQVANAIIGHYDCTYGGGAHLSSPLASIAATNKLCQS 306
Query: 370 FSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSA 429
F F+ Y +G+ G + + + + + + T +V R K ++A
Sbjct: 307 FQTFNICYADTGLLGAHFVCDHMSIDDMMFVLQGQWMRLCTSATESEVL--RGKNLLRNA 364
Query: 430 ILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPL-TMAS 488
++ +L+ V EDIGR +LTYG R P+ + + V A+ + V K +A
Sbjct: 365 LVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDARVVREVCSKYFYDQCPAVAG 424
Query: 489 YGDVINVPSYDAVSS 503
+G + +P Y+ + S
Sbjct: 425 FGPIEQLPDYNRIRS 439
>pdb|3CWB|A Chain A, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|N Chain N, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|A Chain A, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|N Chain N, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|A Chain A, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|N Chain N, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|A Chain A, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|N Chain N, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|A Chain A, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|N Chain N, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|A Chain A, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|N Chain N, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|A Chain A, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|N Chain N, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|A Chain A, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|N Chain N, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|A Chain A, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|N Chain N, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|A Chain A, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|N Chain N, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|A Chain A, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|N Chain N, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|A Chain A, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|N Chain N, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|A Chain A, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|N Chain N, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 446
Score = 167 bits (424), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 117/434 (26%), Positives = 208/434 (47%), Gaps = 15/434 (3%)
Query: 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH 137
+T ++TL NG+++ASE S P ++ +++G GS YE+ + G + +E +AF+ T+ R
Sbjct: 13 ETNVTTLDNGLRVASEESSQPTCTVGVWIGAGSRYENEKNNGAGYFVEHLAFKGTKKRPC 72
Query: 138 LRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLT 197
+EVE++G + SREQ + AL +P++VELL D V+N + ++ ++
Sbjct: 73 AAFEKEVESMGAHFNGYTSREQTAFYIKALSKDMPKVVELLADVVQNCALEESQIEKERG 132
Query: 198 KVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTG 256
+ E+ E+ N+ ++ + +H+ + G ALA + I L L ++ ++
Sbjct: 133 VILQELKEMDNDMTNVTFDYLHATAFQGTALARTVEGTTENIKHLTRADLASYIDTHFKA 192
Query: 257 PRMVLAAS-GVEHDQLVSVAEPLLSDLPSIHPREE----PKSVYTGGDYRCQADS-GLTH 310
PRMVLAA+ G+ H +LV A S + + + P+ +TG + R + D+ + H
Sbjct: 193 PRMVLAAAGGISHKELVDAARQHFSGVSFTYKEDAVPILPRCRFTGSEIRARDDALPVAH 252
Query: 311 FVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSF 370
LA E P GW D D + L V ++ + SRL + E SF
Sbjct: 253 VALAVEGP-GW-ADPDNVVLHVANAII--GRYDRTFGGGKHLSSRLAALAV-EHKLCHSF 307
Query: 371 SAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAI 430
F+ Y+ +G+FG + + A E + + T +V+ RAK +SA+
Sbjct: 308 QTFNTSYSDTGLFGFHFVADPLSIDDMMFCAQGEWMRLCTSTTESEVK--RAKNHLRSAM 365
Query: 431 LMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSPL-TMASY 489
+ L+ V E IG +L YG R +E + + V A+ + V K + +A+
Sbjct: 366 VAQLDGTTPVCETIGSHLLNYGRRISLEEWDSRISAVDARMVRDVCSKYIYDKCPALAAV 425
Query: 490 GDVINVPSYDAVSS 503
G + + Y+ + S
Sbjct: 426 GPIEQLLDYNRIRS 439
>pdb|1HR6|B Chain B, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|D Chain D, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|F Chain F, Yeast Mitochondrial Processing Peptidase
pdb|1HR6|H Chain H, Yeast Mitochondrial Processing Peptidase
Length = 443
Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 124/444 (27%), Positives = 211/444 (47%), Gaps = 21/444 (4%)
Query: 76 PGKTKISTLPNGVKIASE-TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRN 134
PG T+ S LPNG+ IA+E + A++ ++V GS E+ + GT H LE +AF+ T+N
Sbjct: 5 PG-TRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQN 63
Query: 135 RSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNE 194
R I E+E IG ++ A SRE Y +L+ +P+ V++L D + V + +
Sbjct: 64 RPQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIER 123
Query: 195 QLTKVKSEISEVSNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAEN 253
+ + E EV ++ + +H Y L +L P I + T L++++ +N
Sbjct: 124 ERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKN 183
Query: 254 YTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIH-------PREEPKSVYTGGDYRCQAD 305
Y G RMVLA +G V+H++LV A+ +P PR P V+ G+ + +
Sbjct: 184 YKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPR-GPLPVFCRGERFIKEN 242
Query: 306 S-GLTHFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEF 364
+ TH +A E G D Q ++ S L
Sbjct: 243 TLPTTHIAIALE--GVSWSAPDYFVALATQAIVGNWDRAIGTGTNSP--SPLAVAASQNG 298
Query: 365 PQVQSFSAFSNIYNHSGMFGIQGTTGSD--FVSKAIDLAARELISVATPGEVDQVQLDRA 422
S+ +FS Y SG++G+ T S+ V ++ +E + + G++ +++RA
Sbjct: 299 SLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKS-GKISDAEVNRA 357
Query: 423 KQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQ-KLLS 481
K K+A+L++L+ + EDIGRQV+T G+R E + V+ +T DI A +L +
Sbjct: 358 KAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQN 417
Query: 482 SPLTMASYGDVINVPSYDAVSSKF 505
P++M + G+ VP+ + K
Sbjct: 418 KPVSMVALGNTSTVPNVSYIEEKL 441
>pdb|1HR7|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR7|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
pdb|1HR8|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR8|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Cytochrome C Oxidase Iv Signal Peptide
pdb|1HR9|B Chain B, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|D Chain D, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|F Chain F, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
pdb|1HR9|H Chain H, Yeast Mitochondrial Processing Peptidase Beta-E73q Mutant
Complexed With Malate Dehydrogenase Signal Peptide
Length = 443
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 123/444 (27%), Positives = 211/444 (47%), Gaps = 21/444 (4%)
Query: 76 PGKTKISTLPNGVKIASE-TSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRN 134
PG T+ S LPNG+ IA+E + A++ ++V GS E+ + GT H L+ +AF+ T+N
Sbjct: 5 PG-TRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLQHLAFKGTQN 63
Query: 135 RSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNE 194
R I E+E IG ++ A SRE Y +L+ +P+ V++L D + V + +
Sbjct: 64 RPQQGIELEIENIGSHLNAYTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIER 123
Query: 195 QLTKVKSEISEVSNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAEN 253
+ + E EV ++ + +H Y L +L P I + T L++++ +N
Sbjct: 124 ERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTILGPIKNIKSITRTDLKDYITKN 183
Query: 254 YTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIH-------PREEPKSVYTGGDYRCQAD 305
Y G RMVLA +G V+H++LV A+ +P PR P V+ G+ + +
Sbjct: 184 YKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPR-GPLPVFCRGERFIKEN 242
Query: 306 S-GLTHFVLAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEF 364
+ TH +A E G D Q ++ S L
Sbjct: 243 TLPTTHIAIALE--GVSWSAPDYFVALATQAIVGNWDRAIGTGTNSP--SPLAVAASQNG 298
Query: 365 PQVQSFSAFSNIYNHSGMFGIQGTTGSD--FVSKAIDLAARELISVATPGEVDQVQLDRA 422
S+ +FS Y SG++G+ T S+ V ++ +E + + G++ +++RA
Sbjct: 299 SLANSYMSFSTSYADSGLWGMYIVTDSNEHNVRLIVNEILKEWKRIKS-GKISDAEVNRA 357
Query: 423 KQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQ-KLLS 481
K K+A+L++L+ + EDIGRQV+T G+R E + V+ +T DI A +L +
Sbjct: 358 KAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFEQVDKITKDDIIMWANYRLQN 417
Query: 482 SPLTMASYGDVINVPSYDAVSSKF 505
P++M + G+ VP+ + K
Sbjct: 418 KPVSMVALGNTSTVPNVSYIEEKL 441
>pdb|3HDI|A Chain A, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
pdb|3HDI|B Chain B, Crystal Structure Of Bacillus Halodurans Metallo Peptidase
Length = 421
Score = 134 bits (336), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/403 (25%), Positives = 186/403 (46%), Gaps = 17/403 (4%)
Query: 83 TLPNGVKIASET-SVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIV 141
TL NGV+I +E S SI ++VG GS YES G +H LE M F+ T RS I
Sbjct: 6 TLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIA 65
Query: 142 REVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKS 201
++IGG V A S+E Y L + + ++ L D + F E+ ++ V
Sbjct: 66 EFFDSIGGQVNAFTSKEYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFE 125
Query: 202 EISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMV 260
EI V + P ++ + + SA Y +L P+L +N N +L ++ YTG +V
Sbjct: 126 EIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVETLNSFNEGMLRHYMDRFYTGDYVV 185
Query: 261 LAASGVEHDQLVSVAEPLLSDL-PSIHPREEPKSVYTGGDYRCQADSGLTHFVLAFELPG 319
++ +G HD+L+ + S + P+ + + K ++ + ++ H L + PG
Sbjct: 186 ISVAGNVHDELIDKIKETFSQVKPTTYNYQGEKPMFLPNRIVRKKETEQAHLCLGY--PG 243
Query: 320 GWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQVQSFSAFSNIYNH 379
DKD L +L +L M SRL++ + + S ++ + +
Sbjct: 244 LPIGDKDVYALVLLNNVL-----------GGSMSSRLFQDIREKRGLCYSVFSYHSSFRD 292
Query: 380 SGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMV 439
SGM I TG D + + + +E S + + +L+ K+ K +++++LES
Sbjct: 293 SGMLTIYAGTGHDQLDDLV-YSIQETTSALAEKGLTEKELENGKEQLKGSLMLSLESTNS 351
Query: 440 VSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSS 482
G+ L + + ++ ++ + V +D++ +A+ LLS+
Sbjct: 352 RMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSRLAKILLSA 394
>pdb|1EZV|B Chain B, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|B Chain B, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|M Chain M, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KB9|B Chain B, Yeast Cytochrome Bc1 Complex
pdb|1P84|B Chain B, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|B Chain B, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|B Chain B, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|M Chain M, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|B Chain B, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|M Chain M, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 352
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 56/208 (26%), Positives = 100/208 (48%), Gaps = 9/208 (4%)
Query: 90 IASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGG 149
+++ + + ++++++ V GS Y + G HLL R F++T RS L++VRE E +GG
Sbjct: 3 VSARDAPTKISTLAVKVHGGSRYATKD--GVAHLLNRFNFQNTNTRSALKLVRESELLGG 60
Query: 150 NVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQ-LTKVKSEISEVSN 208
+++ RE + LK +P V L D + F E+ E L + + +
Sbjct: 61 TFKSTLDREYITLKATFLKDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQ 120
Query: 209 NPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VE 267
P + +++ + L NPLL + R++ +++F + YT + ++ VE
Sbjct: 121 CPVKSAEDQLYAITFRKGLGNPLLY--DGVERVSLQDIKDFADKVYTKENLEVSGENVVE 178
Query: 268 HDQLVSVAEPLLSDLP---SIHPREEPK 292
D V E LLS LP S+ + EPK
Sbjct: 179 ADLKRFVDESLLSTLPAGKSLVSKSEPK 206
>pdb|3AMJ|C Chain C, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
pdb|3AMJ|A Chain A, The Crystal Structure Of The Heterodimer Of M16b Peptidase
From Sphingomonas Sp. A1
Length = 437
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 99/425 (23%), Positives = 180/425 (42%), Gaps = 34/425 (8%)
Query: 82 STLPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRI 140
+TLPNG+K+ E +P ++ GS+ E+ + G H LE M F+ T++
Sbjct: 10 TTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEF 69
Query: 141 VREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVK 200
+ V A+GG A +R+ Y + + +++ L D + N V D +++ +
Sbjct: 70 SKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIA 129
Query: 201 SEIS-EVSNNPQSLLLEAIHSAGYSGALANPLLAP----ESAINRLNSTLLEEFVAENYT 255
E + P+S EA+ +A Y +A+P P + I + + + ++ Y
Sbjct: 130 EERRWRTDDKPRSKAYEALMAASY---VAHPYRVPVIGWMNDIQNMTAQDVRDWYKRWY- 185
Query: 256 GPR--MVLAASGVEHDQLVSVAEPLLSDLPSIH--PREEPKSVYTGGDYR--CQADSGLT 309
GP V+ VEH+ + +AE L + R++ G R +A + L
Sbjct: 186 GPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPAELP 245
Query: 310 HFVLAFELPG--GWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQV 367
+ LA+ +P K +DA L +L +L M +L R +
Sbjct: 246 YLALAWHVPAIVDLDKSRDAYALEILAAVL-------DGYDGARMTRQLVRGNKHAVSAG 298
Query: 368 QSFSAFSNIYNHSGMFGIQG--TTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQS 425
+ + S G+F ++G + G DL A ++ +A G V + +L R K
Sbjct: 299 AGYDSLSR--GQQGLFILEGVPSKGVTIAQLETDLRA-QVRDIAAKG-VTEAELSRVKSQ 354
Query: 426 TKSAILMNLESRMVVSEDIGR-QVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSP- 483
+ + +S M + IG +VL R + F + + VTA ++ + A +LL+
Sbjct: 355 MVAGKVYEQDSLMGQATQIGGLEVLGLSWRDD-DRFYQQLRSVTAAEVKAAAARLLTDDT 413
Query: 484 LTMAS 488
LT+A+
Sbjct: 414 LTVAN 418
>pdb|3AMI|A Chain A, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
pdb|3AMI|B Chain B, The Crystal Structure Of The M16b Metallopeptidase Subunit
From Sphingomonas Sp. A1
Length = 445
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 99/425 (23%), Positives = 180/425 (42%), Gaps = 34/425 (8%)
Query: 82 STLPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRI 140
+TLPNG+K+ E +P ++ GS+ E+ + G H LE M F+ T++
Sbjct: 10 TTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEF 69
Query: 141 VREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVK 200
+ V A+GG A +R+ Y + + +++ L D + N V D +++ +
Sbjct: 70 SKRVAAMGGRDNAFTTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIA 129
Query: 201 SEIS-EVSNNPQSLLLEAIHSAGYSGALANPLLAP----ESAINRLNSTLLEEFVAENYT 255
E + P+S EA+ +A Y +A+P P + I + + + ++ Y
Sbjct: 130 EERRWRTDDKPRSKAYEALMAASY---VAHPYRVPVIGWMNDIQNMTAQDVRDWYKRWY- 185
Query: 256 GPR--MVLAASGVEHDQLVSVAEPLLSDLPSIH--PREEPKSVYTGGDYR--CQADSGLT 309
GP V+ VEH+ + +AE L + R++ G R +A + L
Sbjct: 186 GPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPAELP 245
Query: 310 HFVLAFELPG--GWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMYSRLYRRVLNEFPQV 367
+ LA+ +P K +DA L +L +L M +L R +
Sbjct: 246 YLALAWHVPAIVDLDKSRDAYALEILAAVL-------DGYDGARMTRQLVRGNKHAVSAG 298
Query: 368 QSFSAFSNIYNHSGMFGIQG--TTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQS 425
+ + S G+F ++G + G DL A ++ +A G V + +L R K
Sbjct: 299 AGYDSLSR--GQQGLFILEGVPSKGVTIAQLETDLRA-QVRDIAAKG-VTEAELSRVKSQ 354
Query: 426 TKSAILMNLESRMVVSEDIGR-QVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSSP- 483
+ + +S M + IG +VL R + F + + VTA ++ + A +LL+
Sbjct: 355 MVAGKVYEQDSLMGQATQIGGLEVLGLSWRDD-DRFYQQLRSVTAAEVKAAAARLLTDDT 413
Query: 484 LTMAS 488
LT+A+
Sbjct: 414 LTVAN 418
>pdb|1EZV|A Chain A, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
pdb|1KYO|A Chain A, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|L Chain L, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
Length = 430
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 97/453 (21%), Positives = 189/453 (41%), Gaps = 70/453 (15%)
Query: 80 KISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR 139
+++ L NG+ +A+E + + AS+ + G G+ E+P + G ++L + + F S N +
Sbjct: 2 EVTQLSNGIVVATEHNPAHTASVGVVFGSGAANENPYNNGVSNLWKNI-FLSKENSA--V 58
Query: 140 IVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDC-VRNPVFLDWEVNEQLTK 198
+E A+ N+ SR+ Y +L + ++ L ++ L N + TK
Sbjct: 59 AAKEGLALSSNI----SRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATK 114
Query: 199 VKSEISEV----SNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAEN 253
KS + +V N+ + +LE +HS + L+ P ++ L LE F +
Sbjct: 115 -KSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANNH 173
Query: 254 YTGPRMVLAASG-VEHDQLV-SVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADS----- 306
+ V+ +G ++H+ LV S+ LS P + K+ + G + R + D+
Sbjct: 174 FLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDDTLPKAW 233
Query: 307 -----------GLTHFV--LAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXMY 353
+FV LA ++ G ++ + A L +++L
Sbjct: 234 ISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLL----------------- 276
Query: 354 SRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGS-----DFVSKAIDLAARELISV 408
+ E+ +F+ FS Y SG++G T + D + + R ISV
Sbjct: 277 -----DNIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTISV 331
Query: 409 ATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSED--IGRQVLTYGERKPVEHFLKTVEG 466
+++RAK K + ES V++ +G +VL G + + K ++
Sbjct: 332 T------DTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDA 385
Query: 467 VTAKDIASVA-QKLLSSPLTMASYGDVINVPSY 498
+T KD+ + A ++L + +A G + + Y
Sbjct: 386 ITVKDVKAWAGKRLWDQDIAIAGTGQIEGLLDY 418
>pdb|1KB9|A Chain A, Yeast Cytochrome Bc1 Complex
pdb|1P84|A Chain A, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
pdb|2IBZ|A Chain A, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|A Chain A, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|L Chain L, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|A Chain A, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|L Chain L, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 431
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 98/454 (21%), Positives = 189/454 (41%), Gaps = 71/454 (15%)
Query: 80 KISTLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHL 138
+++ L NG+ +A+E + S AS+ + G G+ E+P + G ++L + + F S N +
Sbjct: 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNI-FLSKENSA-- 58
Query: 139 RIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDC-VRNPVFLDWEVNEQLT 197
+E A+ N+ SR+ Y +L + ++ L ++ L N + T
Sbjct: 59 VAAKEGLALSSNI----SRDFQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEAT 114
Query: 198 KVKSEISEV----SNNPQSLLLEAIHSAGYSGA-LANPLLAPESAINRLNSTLLEEFVAE 252
K KS + +V N+ + +LE +HS + L+ P ++ L LE F
Sbjct: 115 K-KSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGTLESLENLVVADLESFANN 173
Query: 253 NYTGPRMVLAASG-VEHDQLV-SVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADS---- 306
++ V+ +G ++H+ LV S+ LS P + K+ + G + R + D+
Sbjct: 174 HFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDDTLPKA 233
Query: 307 ------------GLTHFV--LAFELPGGWHKDKDAMTLTVLQMLLXXXXXXXXXXXXXXM 352
+FV LA ++ G ++ + A L +++L
Sbjct: 234 WISLAVEGEPVNSPNYFVAKLAAQIFGSYNAFEPASRLQGIKLL---------------- 277
Query: 353 YSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGS-----DFVSKAIDLAARELIS 407
+ E+ +F+ FS Y SG++G T + D + + R IS
Sbjct: 278 ------DNIQEYQLCDNFNHFSLSYKDSGLWGFSTATRNVTMIDDLIHFTLKQWNRLTIS 331
Query: 408 VATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSED--IGRQVLTYGERKPVEHFLKTVE 465
V +++RAK K + ES V++ +G +VL G + + K ++
Sbjct: 332 VT------DTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKID 385
Query: 466 GVTAKDIASVA-QKLLSSPLTMASYGDVINVPSY 498
+T KD+ + A ++L + +A G + + Y
Sbjct: 386 AITVKDVKAWAGKRLWDQDIAIAGTGQIEGLLDY 419
>pdb|3QZ2|A Chain A, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|3QZ2|B Chain B, The Structure Of Cysteine-Free Human Insulin Degrading
Enzyme
pdb|4DTT|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
pdb|4DTT|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme (ide)
In Complex With Compund 41367
Length = 990
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H LE M F T+
Sbjct: 40 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLEHMLFLGTKKYPKENEYS 99
Query: 143 E-VEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKS 201
+ + G+ A S E Y FD ++ ++ +P+F + + ++ V S
Sbjct: 100 QFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDS 159
Query: 202 E 202
E
Sbjct: 160 E 160
>pdb|3CWW|A Chain A, Crystal Structure Of Ide-Bradykinin Complex
pdb|3CWW|B Chain B, Crystal Structure Of Ide-Bradykinin Complex
Length = 990
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H L+ M F T+
Sbjct: 40 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYS 99
Query: 143 E-VEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKS 201
+ + G+ A S E Y FD ++ ++ +P+F + + ++ V S
Sbjct: 100 QFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDS 159
Query: 202 E 202
E
Sbjct: 160 E 160
>pdb|2WBY|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WBY|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Insulin
pdb|2WC0|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|2WC0|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Iodinated Insulin
pdb|3H44|A Chain A, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3H44|B Chain B, Crystal Structure Of Insulin Degrading Enzyme In Complex
With Macrophage Inflammatory Protein 1 Alpha
pdb|3OFI|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3OFI|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Ubiquitin
pdb|3N56|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N56|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human B-Type Natriuretic Peptide (Bnp)
pdb|3N57|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|3N57|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme (Ide)
In Complex With Human Atrial Natriuretic Peptide (Anp)
pdb|2YPU|A Chain A, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
pdb|2YPU|B Chain B, Human Insulin Degrading Enzyme E111q In Complex With
Inhibitor Compound 41367
Length = 990
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H L+ M F T+
Sbjct: 40 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYS 99
Query: 143 E-VEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKS 201
+ + G+ A S E Y FD ++ ++ +P+F + + ++ V S
Sbjct: 100 QFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDS 159
Query: 202 E 202
E
Sbjct: 160 E 160
>pdb|3HGZ|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
pdb|3HGZ|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amylin
Length = 969
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H L+ M F T+
Sbjct: 27 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYS 86
Query: 143 E-VEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKS 201
+ + G+ A S E Y FD ++ ++ +P+F + + ++ V S
Sbjct: 87 QFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDS 146
Query: 202 E 202
E
Sbjct: 147 E 147
>pdb|3E4Z|A Chain A, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
pdb|3E4Z|B Chain B, Crystal Structure Of Human Insulin Degrading Enzyme In
Complex With Insulin-Like Growth Factor Ii
Length = 990
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H L+ M F T+
Sbjct: 40 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYS 99
Query: 143 E-VEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKS 201
+ + G+ A S E Y FD ++ ++ +P+F + + ++ V S
Sbjct: 100 QFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDS 159
Query: 202 E 202
E
Sbjct: 160 E 160
>pdb|3E4A|A Chain A, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|3E4A|B Chain B, Human Ide-Inhibitor Complex At 2.6 Angstrom Resolution
pdb|2WK3|A Chain A, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
pdb|2WK3|B Chain B, Crystal Structure Of Human Insulin-Degrading Enzyme In
Complex With Amyloid-Beta (1-42)
Length = 1019
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 2/121 (1%)
Query: 84 LPNGVKIA-SETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVR 142
L NG+K+ + +S +L V GS+ + P G +H L+ M F T+
Sbjct: 69 LANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYS 128
Query: 143 E-VEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKS 201
+ + G+ A S E Y FD ++ ++ +P+F + + ++ V S
Sbjct: 129 QFLSEHAGSSNAFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDS 188
Query: 202 E 202
E
Sbjct: 189 E 189
>pdb|3V6O|A Chain A, Leptin Receptor-Antibody Complex
pdb|3V6O|B Chain B, Leptin Receptor-Antibody Complex
Length = 206
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
Query: 280 SDLPSIHPREEPKSVY--TGGDYRC 302
SD+PSIHP EPK Y + G Y C
Sbjct: 47 SDIPSIHPISEPKDCYLQSDGFYEC 71
>pdb|3QVC|A Chain A, Crystal Structure Of Histo-Aspartic Protease (Hap) Zymogen
From Plasmodium Falciparum
pdb|3QVI|A Chain A, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|B Chain B, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|C Chain C, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
pdb|3QVI|D Chain D, Crystal Structure Of Kni-10395 Bound Histo-Aspartic
Protease (Hap) From Plasmodium Falciparum
Length = 451
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 25/57 (43%)
Query: 122 HLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELL 178
++ E F+ R +H+ + +G N++ S R LK Y+ E V+L
Sbjct: 56 YIFENFVFQKNRKINHIIKTSKYSTVGFNIENSYDRLMKTIKEHKLKNYIKESVKLF 112
>pdb|3P2T|A Chain A, Crystal Structure Of Leukocyte Ig-Like Receptor Lilrb4
(Ilt3LIR- 5CD85K)
Length = 196
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Query: 208 NNPQSLLLEAIHSAGYSGALANPLLAPESAINRL--NSTLLEEFV--AENYTGPRMVLAA 263
++P L++ +S AL +PL+ ++ L + + ++ F+ E P + L +
Sbjct: 87 SDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSPMDTFLLCKERAAHPLLCLRS 146
Query: 264 SGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGLTHFVLA 314
EH AE +S + S+H GG YRC + G +H++L+
Sbjct: 147 ---EHGAQQHQAEFPMSPVTSVH----------GGTYRCFSSHGFSHYLLS 184
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.131 0.371
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,390,723
Number of Sequences: 62578
Number of extensions: 445589
Number of successful extensions: 1150
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1081
Number of HSP's gapped (non-prelim): 34
length of query: 508
length of database: 14,973,337
effective HSP length: 103
effective length of query: 405
effective length of database: 8,527,803
effective search space: 3453760215
effective search space used: 3453760215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)