Query 010516
Match_columns 508
No_of_seqs 245 out of 1464
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 01:26:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2067 Mitochondrial processi 100.0 1.8E-84 3.9E-89 607.3 37.3 430 75-508 21-460 (472)
2 KOG0960 Mitochondrial processi 100.0 1.4E-66 3E-71 486.6 39.4 423 77-506 32-463 (467)
3 COG0612 PqqL Predicted Zn-depe 100.0 2.9E-52 6.2E-57 430.7 43.0 410 77-498 15-437 (438)
4 TIGR02110 PQQ_syn_pqqF coenzym 100.0 1.1E-43 2.5E-48 373.9 41.7 327 81-425 2-345 (696)
5 PRK15101 protease3; Provisiona 100.0 5.9E-42 1.3E-46 386.7 40.7 400 76-492 41-462 (961)
6 KOG2583 Ubiquinol cytochrome c 100.0 4.9E-37 1.1E-41 289.3 37.7 406 78-500 22-428 (429)
7 PRK15101 protease3; Provisiona 100.0 6.1E-36 1.3E-40 337.9 39.8 414 53-493 494-930 (961)
8 PTZ00432 falcilysin; Provision 100.0 1.3E-33 2.8E-38 316.0 40.2 387 77-481 90-561 (1119)
9 COG1025 Ptr Secreted/periplasm 100.0 1.1E-27 2.4E-32 250.7 37.7 402 74-492 19-441 (937)
10 KOG0959 N-arginine dibasic con 100.0 6.1E-27 1.3E-31 249.4 37.9 398 77-491 26-445 (974)
11 COG1025 Ptr Secreted/periplasm 100.0 1.1E-24 2.4E-29 228.4 38.0 412 54-491 474-908 (937)
12 KOG0959 N-arginine dibasic con 99.9 1.4E-22 3E-27 216.4 37.6 402 53-481 480-909 (974)
13 COG1026 Predicted Zn-dependent 99.9 1.7E-22 3.7E-27 212.8 29.7 394 82-493 25-459 (978)
14 COG1026 Predicted Zn-dependent 99.9 2.9E-20 6.3E-25 196.1 32.2 399 69-491 518-957 (978)
15 PF00675 Peptidase_M16: Insuli 99.9 1.2E-21 2.6E-26 171.7 16.6 146 89-234 1-148 (149)
16 PF05193 Peptidase_M16_C: Pept 99.9 2.9E-21 6.3E-26 174.9 17.0 174 240-426 1-184 (184)
17 PTZ00432 falcilysin; Provision 99.9 1.4E-19 3.1E-24 203.4 33.1 387 83-495 664-1106(1119)
18 KOG0961 Predicted Zn2+-depende 99.8 7.3E-18 1.6E-22 168.8 29.2 383 85-488 27-452 (1022)
19 KOG2019 Metalloendoprotease HM 99.8 4.3E-17 9.3E-22 163.6 29.8 382 82-491 564-984 (998)
20 KOG2019 Metalloendoprotease HM 99.8 5.7E-17 1.2E-21 162.8 25.2 396 80-493 55-497 (998)
21 KOG0961 Predicted Zn2+-depende 99.4 1.2E-11 2.6E-16 124.8 19.8 365 96-481 559-970 (1022)
22 PF08367 M16C_assoc: Peptidase 98.6 1.4E-06 3E-11 82.7 14.9 121 67-190 59-192 (248)
23 PF03410 Peptidase_M44: Protei 98.0 0.00017 3.8E-09 71.2 14.7 185 82-288 2-195 (590)
24 COG0612 PqqL Predicted Zn-depe 97.9 0.00036 7.8E-09 72.4 15.9 181 306-505 36-220 (438)
25 PHA03081 putative metalloprote 97.8 0.00049 1.1E-08 68.2 14.5 185 82-288 2-195 (595)
26 TIGR02110 PQQ_syn_pqqF coenzym 97.7 0.0036 7.7E-08 67.7 20.1 169 304-492 17-194 (696)
27 KOG0960 Mitochondrial processi 96.6 0.038 8.2E-07 54.0 12.4 171 305-494 51-225 (467)
28 PF00675 Peptidase_M16: Insuli 95.9 0.6 1.3E-05 40.2 15.5 132 303-454 7-140 (149)
29 KOG2067 Mitochondrial processi 95.7 0.099 2.2E-06 51.3 10.5 122 142-265 319-442 (472)
30 PF05193 Peptidase_M16_C: Pept 87.5 5.2 0.00011 35.0 9.7 108 87-199 67-184 (184)
31 KOG2583 Ubiquinol cytochrome c 73.3 57 0.0012 32.7 11.6 168 302-492 37-210 (429)
32 PF09851 SHOCT: Short C-termin 67.8 8.1 0.00018 23.4 3.0 24 404-427 7-30 (31)
33 KOG1374 Gamma tubulin [Cytoske 56.9 33 0.00071 34.0 6.4 172 328-504 117-324 (448)
34 COG0012 Predicted GTPase, prob 39.5 2.1E+02 0.0045 28.7 9.1 41 349-393 84-124 (372)
35 PRK11032 hypothetical protein; 36.7 67 0.0015 28.0 4.7 38 393-433 25-62 (160)
36 PF08367 M16C_assoc: Peptidase 36.1 3.7E+02 0.008 25.2 14.2 119 304-434 87-210 (248)
37 PF07295 DUF1451: Protein of u 34.2 1.2E+02 0.0026 26.1 5.7 46 391-439 13-58 (146)
38 cd05026 S-100Z S-100Z: S-100Z 32.2 2.4E+02 0.0052 21.8 7.5 77 391-468 2-83 (93)
39 cd08804 Death_ank2 Death domai 32.1 2.1E+02 0.0045 21.9 6.3 57 413-476 26-83 (84)
40 cd08779 Death_PIDD Death Domai 28.6 2.7E+02 0.0059 21.3 6.7 76 399-479 10-85 (86)
41 PF05120 GvpG: Gas vesicle pro 27.2 1.9E+02 0.0041 21.9 5.1 39 390-432 29-67 (79)
42 PF01729 QRPTase_C: Quinolinat 26.8 60 0.0013 28.7 2.8 42 236-277 104-147 (169)
43 PRK09585 anmK anhydro-N-acetyl 26.3 6.8E+02 0.015 25.2 10.7 102 384-491 182-295 (365)
44 COG1125 OpuBA ABC-type proline 24.5 1.1E+02 0.0024 29.1 4.2 45 235-279 163-207 (309)
45 cd05023 S-100A11 S-100A11: S-1 23.6 3.4E+02 0.0075 20.8 7.1 76 393-469 3-83 (89)
46 PF14659 Phage_int_SAM_3: Phag 22.9 68 0.0015 21.9 2.1 17 464-480 42-58 (58)
47 cd04922 ACT_AKi-HSDH-ThrA_2 AC 21.0 2.4E+02 0.0052 19.5 4.8 45 139-183 20-65 (66)
48 PF11517 Nab2: Nuclear abundan 21.0 4.3E+02 0.0093 20.9 6.1 46 435-480 28-74 (107)
49 PF09568 RE_MjaI: MjaI restric 20.5 4.9E+02 0.011 22.9 7.1 24 457-480 60-83 (170)
50 COG3462 Predicted membrane pro 20.3 1.6E+02 0.0034 23.7 3.6 32 392-427 85-116 (117)
51 COG5023 Tubulin [Cytoskeleton] 20.0 62 0.0013 32.2 1.7 99 344-445 139-251 (443)
No 1
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-84 Score=607.28 Aligned_cols=430 Identities=49% Similarity=0.763 Sum_probs=412.1
Q ss_pred CCCceEEEEcCCCcEEEEeeCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeEEe
Q 010516 75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 154 (508)
Q Consensus 75 ~~~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 154 (508)
++.+++.++|+||+||++++++++.+.++++|++|+++|.+...|++|++++|+|++|.+++..++.+.||.+||++.++
T Consensus 21 ~~~~~kvttL~NGlkvase~~pg~f~~vGlyIdsGsrYE~~~~~GisH~lerLAF~ST~~~~~~ei~~~LE~~GGn~~cq 100 (472)
T KOG2067|consen 21 EPSNTKVTTLPNGLKVASENTPGQFCTVGLYIDSGSRYEAKYFSGISHFLERLAFKSTERFSSKEILAELEKLGGNCDCQ 100 (472)
T ss_pred ccccceeeecCCccEEeccCCCCCceEEEEEEecCccccCcCcccHHHHHHHHhhccccCCcHHHHHHHHHHhCCccccc
Confidence 66789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCCCCCCC
Q 010516 155 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLA 233 (508)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~ 233 (508)
+++|.+.|.+++.+++++.++++|+|.+.+|+|++|+++.++..++-|+.+...+|+..+.+++|.++|.+ .++.|.++
T Consensus 101 sSRetm~Yaas~~~~~v~sm~~lLadtV~~P~~~d~ev~~~~~~v~~E~~el~~~Pe~lL~e~iH~Aay~~ntlg~pl~c 180 (472)
T KOG2067|consen 101 SSRETMMYAASADSDGVDSMVELLADTVLNPKFTDQEVEEARRAVKYEIEELWMRPEPLLTEMIHSAAYSGNTLGLPLLC 180 (472)
T ss_pred ccHhhhHHHHHhhhcccHHHHHHHHHHHhcccccHHHHHHHHHhhhheccccccCchhhHHHHHHHHHhccCcccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999977 99999999
Q ss_pred ChHHhccCCHHHHHHHHHhhcCCCCeEEEEcCCCHHHHHHHHHhhhcCCCCCCCCC--CCCCccCCCeeEeeC-------
Q 010516 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPRE--EPKSVYTGGDYRCQA------- 304 (508)
Q Consensus 234 ~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~Gv~~e~l~~~~~~~~~~lp~~~~~~--~~~~~~~~~~~~~~~------- 304 (508)
+.+.|++|+.+.|.+|.+.+|+|.||++..+||+||++++.+++||+.||+...|+ .++.+|+|+...++.
T Consensus 181 p~~~i~~I~~~~l~~yl~~~ytp~rmVlA~vGV~heelv~~~~~~~~~~~s~~~p~i~~~~aQYtGG~~~~~~d~~~~~~ 260 (472)
T KOG2067|consen 181 PEENIDKINREVLEEYLKYFYTPERMVLAGVGVEHEELVEIAEKLLGDLPSTKVPPIDESKAQYTGGELKIDTDAPQVTG 260 (472)
T ss_pred ChhhhhhhhHHHHHHHHHhcCChhheEeeecCCCHHHHHHHHHHHhccCCccCCCCcccchhhccccccccCCCCccccC
Confidence 99999999999999999999999999999999999999999999999999865443 456799999655332
Q ss_pred CCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcceEE
Q 010516 305 DSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 384 (508)
Q Consensus 305 ~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~ 384 (508)
..+-+||+++|++++ | +++|.+++.+|+.+||||||||||||||||+||||.+|.++++|+|+|.|++..|.|+|+|+
T Consensus 261 g~EltHv~lg~Eg~~-~-~deD~v~~avLq~lmGGGGSFSAGGPGKGMySrLY~~vLNry~wv~sctAfnhsy~DtGlfg 338 (472)
T KOG2067|consen 261 GPELTHVVLGFEGCS-W-NDEDFVALAVLQMLMGGGGSFSAGGPGKGMYSRLYLNVLNRYHWVYSCTAFNHSYSDTGLFG 338 (472)
T ss_pred ccceeeeeEeeccCC-C-CChhHHHHHHHHHHhcCCcccCCCCCCcchHHHHHHHHHhhhHHHHHhhhhhccccCCceeE
Confidence 237899999999998 6 77899999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010516 385 IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTV 464 (508)
Q Consensus 385 i~~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~i 464 (508)
|+.+++|+++.++++.+.+++..+.. + ++++|++|||+++++.++||++++...+++++||++.+|.++.++++++.|
T Consensus 339 i~~s~~P~~a~~aveli~~e~~~~~~-~-v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGRQVL~~g~rk~p~e~~~~I 416 (472)
T KOG2067|consen 339 IYASAPPQAANDAVELIAKEMINMAG-G-VTQEELERAKTQLKSMLLMNLESRPVAFEDVGRQVLTTGERKPPDEFIKKI 416 (472)
T ss_pred EeccCCHHHHHHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHHHHhcccccchhHHHHhHHHHhccCcCCHHHHHHHH
Confidence 99999999999999999999999987 4 999999999999999999999999999999999999999999999999999
Q ss_pred hcCCHHHHHHHHHHHhcCCceEEEEcCCCCCCCHHHHHhHhhcC
Q 010516 465 EGVTAKDIASVAQKLLSSPLTMASYGDVINVPSYDAVSSKFKSK 508 (508)
Q Consensus 465 ~~vT~~Di~~~a~~~l~~~~~~~~~G~~~~~p~~~~~~~~~~~~ 508 (508)
+++|++||++++.++|..+++++..||...+|+|+.+.++++.|
T Consensus 417 e~lt~~DI~rva~kvlt~~p~va~~Gd~~~lpt~~~i~~~~~~~ 460 (472)
T KOG2067|consen 417 EQLTPSDISRVASKVLTGKPSVAAFGDGTGLPTYDHIGNAVSSG 460 (472)
T ss_pred HhcCHHHHHHHHHHHhcCCceeccCCcccCCcchhhhhhhcccC
Confidence 99999999999999999999999999999999999999998764
No 2
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-66 Score=486.56 Aligned_cols=423 Identities=31% Similarity=0.574 Sum_probs=397.0
Q ss_pred CceEEEEcCCCcEEEEeeCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeEEeec
Q 010516 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (508)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (508)
|+++.++|+||++|+.+.+...++++++||++||++|++++.|.+||||||+|+||++++...+..+++.+|+.+|++++
T Consensus 32 P~t~vttL~NGlrVaTE~~~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~~Rs~~alElEieniGahLNAytS 111 (467)
T KOG0960|consen 32 PETEVTTLPNGLRVATEHNSASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTKNRSQAALELEIENIGAHLNAYTS 111 (467)
T ss_pred CcceEEEcCCCcEEEeccCCCcceEEEEEeccCccccccccccHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHhccccc
Confidence 57899999999999999986679999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCCCCCCCCh
Q 010516 157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPE 235 (508)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~~ 235 (508)
++++.|..+++++++++++++|.|++.|..+.+.+++++|..+++|.++...+.+...++++|+.+|++ |++++.+|+.
T Consensus 112 ReqT~yyakal~~dv~kavdiLaDIlqns~L~~s~IerER~vILrEmqevd~~~~eVVfdhLHatafQgtPL~~tilGp~ 191 (467)
T KOG0960|consen 112 REQTVYYAKALSKDVPKAVDILADILQNSKLEESAIERERDVILREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGPS 191 (467)
T ss_pred ccceeeehhhccccchHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccccccChh
Confidence 999999999999999999999999999999999999999999999999999999999999999999988 9999999999
Q ss_pred HHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCCCCCCC----CCCCCccCCCeeEe-eCCCCce
Q 010516 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPR----EEPKSVYTGGDYRC-QADSGLT 309 (508)
Q Consensus 236 ~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp~~~~~----~~~~~~~~~~~~~~-~~~~~~~ 309 (508)
+.|++|+.+||.+|.+.+|.++||+++.+| |+||++.+++++||+.++....+ ..+.+.|.|.+++. +++.|.+
T Consensus 192 enI~si~r~DL~~yi~thY~~~RmVlaaaGgV~He~lv~la~k~fg~~~~~~~~~~~~~~~~~~FtgsEvR~rdd~lP~a 271 (467)
T KOG0960|consen 192 ENIKSISRADLKDYINTHYKASRMVLAAAGGVKHEELVKLAEKYFGDLSKLQTGDKVPLVPPARFTGSEVRVRDDDLPLA 271 (467)
T ss_pred hhhhhhhHHHHHHHHHhcccCccEEEEecCCcCHHHHHHHHHHHcCCCcccccCcCCCCCCCccccCceeeecCCCCchh
Confidence 999999999999999999999999999999 99999999999999997753322 23446799999994 5667999
Q ss_pred EEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcceEEEEEEe
Q 010516 310 HFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTT 389 (508)
Q Consensus 310 ~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~i~~~~ 389 (508)
+++++.++.+ | +++|+.+++|.++|+|.-.-+-.||+-.+ ++|-+.+-+. +++.++.+|+.+|.++|+||+|+.|
T Consensus 272 ~~AiAVEG~~-w-~~pD~~~l~van~iiG~wdr~~g~g~~~~--s~La~~~~~~-~l~~sfqsFnt~YkDTGLwG~y~V~ 346 (467)
T KOG0960|consen 272 HIAIAVEGVS-W-AHPDYFALMVANTIIGNWDRTEGGGRNLS--SRLAQKIQQD-QLCHSFQSFNTSYKDTGLWGIYFVT 346 (467)
T ss_pred heeeeEecCC-c-CCccHHHHHHHHHHhhhhhcccCCccCCc--cHHHHHHHHH-HHHHHHhhhhcccccccceeEEEEe
Confidence 9999999997 8 88999999999999998777666666555 9999888765 7799999999999999999999999
Q ss_pred -CcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCC
Q 010516 390 -GSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVT 468 (508)
Q Consensus 390 -~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vT 468 (508)
++..++.++..+.++..++.. .+|+.|++|||++++.++...++...-.+++|+++++.+|.+.+..++.++|++||
T Consensus 347 ~~~~~iddl~~~vl~eW~rL~~--~vteaEV~RAKn~Lkt~Lll~ldgttpi~ediGrqlL~~Grri~l~El~~rId~vt 424 (467)
T KOG0960|consen 347 DNLTMIDDLIHSVLKEWMRLAT--SVTEAEVERAKNQLKTNLLLSLDGTTPIAEDIGRQLLTYGRRIPLAELEARIDAVT 424 (467)
T ss_pred cChhhHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhhcCCcCChHHHHHHHhhcc
Confidence 789999999999999999997 49999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhc-CCceEEEEcCCCCCCCHHHHHhHhh
Q 010516 469 AKDIASVAQKLLS-SPLTMASYGDVINVPSYDAVSSKFK 506 (508)
Q Consensus 469 ~~Di~~~a~~~l~-~~~~~~~~G~~~~~p~~~~~~~~~~ 506 (508)
++||++++.+|+- ..+.++.+|+.+.+|+|..|+..|.
T Consensus 425 ~~~Vr~va~k~iyd~~iAia~vG~ie~lpdy~~irs~m~ 463 (467)
T KOG0960|consen 425 AKDVREVASKYIYDKDIAIAAVGPIEGLPDYNRIRSGMS 463 (467)
T ss_pred HHHHHHHHHHHhhcCCcceeeecccccCchHHHHhccch
Confidence 9999999999998 8889999999999999999998875
No 3
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=100.00 E-value=2.9e-52 Score=430.68 Aligned_cols=410 Identities=28% Similarity=0.438 Sum_probs=361.2
Q ss_pred CceEEEEcCCCcEEEEeeCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeEEee
Q 010516 77 GKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA 155 (508)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~ 155 (508)
+.++..+|+||+++++.+++ .+.+++.+++++|+..|++...|++|++|||+|+|+.+++..++.+.++..|+..++++
T Consensus 15 ~~~~~~~L~nGl~~~~~~~~~~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~~~~~~~i~~~~~~~G~~~na~t 94 (438)
T COG0612 15 PGLQVFTLPNGLRVITYPNPTAPTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTTGLPSAELAEAFEKLGGQLNAFT 94 (438)
T ss_pred ccceEEEcCCCCEEEEEeCCCCCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCCCCChHHHHHHHHHhcCeeeccc
Confidence 45899999999999998888 58999999999999999999999999999999999999888899999999999999999
Q ss_pred cceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCCCCCCCC
Q 010516 156 SREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAP 234 (508)
Q Consensus 156 ~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~ 234 (508)
+.+.+.|.+++.+++++++|+++.+.+.+|.|++++|+++|..+.+|++...++|...+.+.++..+|++ |+++++.|+
T Consensus 95 s~d~t~y~~~~l~~~~~~~l~llad~l~~p~f~~~~~e~Ek~vil~ei~~~~d~p~~~~~~~l~~~~~~~~p~~~~~~G~ 174 (438)
T COG0612 95 SFDYTVYYLSVLPDNLDKALDLLADILLNPTFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGT 174 (438)
T ss_pred cchhhhhhhhhchhhhHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhccCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987 999999999
Q ss_pred hHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCCCCCCC-CCCC-CccCCCee-Ee----eCCC
Q 010516 235 ESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPR-EEPK-SVYTGGDY-RC----QADS 306 (508)
Q Consensus 235 ~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp~~~~~-~~~~-~~~~~~~~-~~----~~~~ 306 (508)
.+.|.++|.++|++||++||+|+||++++|| ++++++..+++++|+.|+...++ ..+. +...+... +. .++.
T Consensus 175 ~e~I~~it~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (438)
T COG0612 175 EESIEAITREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYFGDLPGAAPPPKIPPEPPLGPERVVRVNDPEQPDL 254 (438)
T ss_pred HHHHHhCCHHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHHccCCccCCCCCCCCccccCCCceEEecCCCCchh
Confidence 9999999999999999999999999999999 99999999999999999972222 2222 23333322 22 2445
Q ss_pred CceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcceEEEE
Q 010516 307 GLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQ 386 (508)
Q Consensus 307 ~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~i~ 386 (508)
.++++.++|+.+. +....+++++.+++.++|++ ++||||..+|++.|++|+++++...+.+.+.+.++
T Consensus 255 ~~~~~~~g~~~~~-~~~~~~~~~~~l~~~llgg~-----------~~SrLf~~~re~~glay~~~~~~~~~~~~~~~~~~ 322 (438)
T COG0612 255 EQAWLALGYPGPD-YDSPDDYAALLLLNGLLGGG-----------FSSRLFQELREKRGLAYSVSSFSDFLSDSGLFSIY 322 (438)
T ss_pred hhhhhhccccCcC-cCcchhhHHHHHHHHHhCCC-----------cchHHHHHHHHhcCceeeeccccccccccCCceEE
Confidence 7888889998886 22223788889999999876 55999999999999999999988888888999999
Q ss_pred EEeCcchHHHHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 010516 387 GTTGSDFVSKAIDLAARELISVATP--GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTV 464 (508)
Q Consensus 387 ~~~~p~~~~~~~~~~~~~l~~l~~~--~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~i 464 (508)
+.+.+.+.++..+.+.+.+..+... +.+++++++++|..+...+....+++...++.++......+...+.+++.+.|
T Consensus 323 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~t~~~~~~~k~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~i 402 (438)
T COG0612 323 AGTAPENPEKTAELVEEILKALKKGLKGPFTEEELDAAKQLLIGLLLLSLDSPSSIAELLGQYLLLGGSLITLEELLERI 402 (438)
T ss_pred EEecCCChhhHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCccCHHHHHHHH
Confidence 9998666666666666666555551 24899999999999999999999999999999988887556777899999999
Q ss_pred hcCCHHHHHHHHHHHhc-CCceEEEEcCCCCCCCH
Q 010516 465 EGVTAKDIASVAQKLLS-SPLTMASYGDVINVPSY 498 (508)
Q Consensus 465 ~~vT~~Di~~~a~~~l~-~~~~~~~~G~~~~~p~~ 498 (508)
++||++||++++++++. ++.+++++||....+.+
T Consensus 403 ~~vt~~dv~~~a~~~~~~~~~~~~~~~p~~~~~~~ 437 (438)
T COG0612 403 EAVTLEDVNAVAKKLLAPENLTIVVLGPEKALKDL 437 (438)
T ss_pred HhcCHHHHHHHHHHhcCCCCcEEEEEccccccccC
Confidence 99999999999999999 67999999998776543
No 4
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=100.00 E-value=1.1e-43 Score=373.89 Aligned_cols=327 Identities=17% Similarity=0.180 Sum_probs=284.7
Q ss_pred EEEcCCCcEEEEeeCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChH-HHHHHHHHcCCeeEEeecce
Q 010516 81 ISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHL-RIVREVEAIGGNVQASASRE 158 (508)
Q Consensus 81 ~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~-~l~~~l~~~g~~~~~~~~~~ 158 (508)
.++|+||++|++.+++ .+.+.+.++|++||.+|+++..|++||+|||+|+||++++.. ++.+.++.+|+++|++|+.+
T Consensus 2 ~~tL~NGLrVllv~~p~~p~vav~l~v~aGS~~Ep~~~~GLAHfLEHMLFkGT~~~~~~~~i~~~le~lGG~lNA~Ts~d 81 (696)
T TIGR02110 2 RITLPNGLRVHLYHQPDAKRAAALLRVAAGSHDEPSAWPGLAHFLEHLLFLGGERFQGDDRLMPWVQRQGGQVNATTLER 81 (696)
T ss_pred eEEcCCCCEEEEEECCCCCEEEEEEEEeeccCCCCCCCCcHHHHHHHHHhcCCCCCCcHHHHHHHHHHhCCeEEEEEcCC
Confidence 4689999999987766 489999999999999999999999999999999999999985 79999999999999999999
Q ss_pred eEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCCCCCCCChHH
Q 010516 159 QMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESA 237 (508)
Q Consensus 159 ~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~~~~ 237 (508)
++.|++++++++++.+|+++.+++.+|.|++++|+++|+.+++|++...++|...+.+.+...+|++ ||+++..|+.++
T Consensus 82 ~T~y~~~v~~~~l~~aL~lLaD~l~~P~f~eeeierEr~vvl~Ei~~~~ddp~~~~~~~l~~~l~~~HPy~~~~iGt~es 161 (696)
T TIGR02110 82 TTAFFFELPAAALAAGLARLCDMLARPLLTAEDQQREREVLEAEYIAWQNDADTLREAALLDALQAGHPLRRFHAGSRDS 161 (696)
T ss_pred eEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999976 999999999999
Q ss_pred hccCC---HHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCCCCCCCCCC--CCccCCCeeE-eeCCCCceE
Q 010516 238 INRLN---STLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--KSVYTGGDYR-CQADSGLTH 310 (508)
Q Consensus 238 l~~l~---~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp~~~~~~~~--~~~~~~~~~~-~~~~~~~~~ 310 (508)
|+.++ .++|++||+++|.|+||+++|+| +++++++++++++|+.|+.+..+... .+.+...... ...+.++.+
T Consensus 162 L~~it~~t~edL~~F~~~~Y~p~NmvLvIvGdvs~eel~~l~e~~f~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~q~~ 241 (696)
T TIGR02110 162 LALPNTAFQQALRDFHRRHYQAGNMQLWLQGPQSLDELEQLAARFGASLAAGGECAQAPPAPLLRFDRLTLAGGSEPRLW 241 (696)
T ss_pred HhCcccchHHHHHHHHHHhcchhcEEEEEEeCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCceeEEEecCcceEE
Confidence 99876 99999999999999999999999 99999999999999999866543221 2222333222 334456666
Q ss_pred EEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcc--eEEEEEE
Q 010516 311 FVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSG--MFGIQGT 388 (508)
Q Consensus 311 v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g--~~~i~~~ 388 (508)
+.+.++... . .+..++.+++.||+++.+ ++||.+||+ .|++|+++++. .+.+.+ .|.|++.
T Consensus 242 l~~~~p~~~--~--~d~~al~lL~~iLg~g~s-----------SrL~~~LRe-~GLaysV~s~~-~~~~~g~~lf~I~~~ 304 (696)
T TIGR02110 242 LLFALAGLP--A--TARDNVTLLCEFLQDEAP-----------GGLLAQLRE-RGLAESVAATW-LYQDAGQALLALEFS 304 (696)
T ss_pred EEEeecCCC--C--CChHHHHHHHHHhCCCcc-----------hHHHHHHHH-CCCEEEEEEec-cccCCCCcEEEEEEE
Confidence 766666544 3 334468899999998744 999999996 79999999865 455544 8999998
Q ss_pred e---CcchHHHHHHHHHHHHHHhhCCC--CCCHHHHHHHHHH
Q 010516 389 T---GSDFVSKAIDLAARELISVATPG--EVDQVQLDRAKQS 425 (508)
Q Consensus 389 ~---~p~~~~~~~~~~~~~l~~l~~~~--~i~~~el~~ak~~ 425 (508)
+ .+++.+++++.+.++|.++++ + +++.+|++++|+.
T Consensus 305 lt~~~~~~~~~v~~~i~~~L~~L~~-~~~~~~~eel~rlk~~ 345 (696)
T TIGR02110 305 ARCISAAAAQQIEQLLTQWLGALAE-QTWAEQLEHYAQLAQR 345 (696)
T ss_pred EcCCCccCHHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHh
Confidence 7 356889999999999999988 5 7999999999988
No 5
>PRK15101 protease3; Provisional
Probab=100.00 E-value=5.9e-42 Score=386.70 Aligned_cols=400 Identities=13% Similarity=0.124 Sum_probs=331.2
Q ss_pred CCceEEEEcCCCcEEEEeeCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCC-hHHHHHHHHHcCCeeEE
Q 010516 76 PGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS-HLRIVREVEAIGGNVQA 153 (508)
Q Consensus 76 ~~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s-~~~l~~~l~~~g~~~~~ 153 (508)
...++.++|+||++|++.+++ .+.+.+.+++++|+.+|+++..|++||+|||+|+||++++ ..++.+.++.+||.+|+
T Consensus 41 ~~~~~~~~L~NGL~v~l~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAHflEHmlf~GT~~~p~~~~~~~~l~~~Gg~~NA 120 (961)
T PRK15101 41 PRQYQAIRLDNGMTVLLVSDPQAVKSLAALALPVGSLEDPDAQQGLAHYLEHMVLMGSKKYPQPDSLAEFLKKHGGSHNA 120 (961)
T ss_pred ccceEEEEeCCCCEEEEEeCCCCcceeEEEEeCcCCCCCCCCCCchHHHHHHHHhcCCccCCCcchHHHHHHHhCCCccc
Confidence 457888999999999987665 5799999999999999999999999999999999999996 57999999999999999
Q ss_pred eecceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCCCCCC
Q 010516 154 SASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLL 232 (508)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~ 232 (508)
+|+.+++.|.+++++++++.+|+++.+++.+|.|++++++++|..+.+|++...++|...+.+.+...+|++ ||+++..
T Consensus 121 ~T~~d~T~y~~~~~~~~l~~aL~~~ad~~~~P~f~~~~~erE~~~v~~E~~~~~~~~~~~~~~~~~~~~~~~hp~~~~~~ 200 (961)
T PRK15101 121 STASYRTAFYLEVENDALPPAVDRLADAIAEPLLDPKNADRERNAVNAELTMARSRDGMRMAQVSAETINPAHPGSRFSG 200 (961)
T ss_pred eECCCceEEEEEcCHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhCCCCCCcccCCC
Confidence 999999999999999999999999999999999999999999999999999988899999999999899977 9999999
Q ss_pred CChHHhccC----CHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCCCCCCCCC--CCCccC---CC-eeE
Q 010516 233 APESAINRL----NSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--PKSVYT---GG-DYR 301 (508)
Q Consensus 233 ~~~~~l~~l----~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp~~~~~~~--~~~~~~---~~-~~~ 301 (508)
|+.++|..+ +.++|++||++||.|+||+++|+| ++++++..+++++|+.||....+.+ ..+.+. .+ ...
T Consensus 201 G~~etl~~~~~~~~~~~L~~f~~~~Y~p~nm~lvv~G~~~~~~l~~~~~~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (961)
T PRK15101 201 GNLETLSDKPGSKLQDALVDFYQRYYSANLMKAVIYSNQPLPELAKLAADTFGRVPNKNASVPEITVPVVTDAQKGIIIH 280 (961)
T ss_pred CCHHHhhcCCchHHHHHHHHHHHHhCcccceEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCCCHHHcCeEEE
Confidence 999999997 699999999999999999999999 9999999999999999987653221 112221 12 222
Q ss_pred eeCCCCceEEEEEeecCCCCCC-CcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCC--C
Q 010516 302 CQADSGLTHFVLAFELPGGWHK-DKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIY--N 378 (508)
Q Consensus 302 ~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~--~ 378 (508)
..+..++..+.+.|+.|. .. ..+.....++..+|+++++ +.|+..|+ +.|++|+++++...+ .
T Consensus 281 ~~~~~~~~~l~l~~~~p~--~~~~~~~~~~~~l~~ll~~~~~-----------g~l~~~L~-~~gla~~v~s~~~~~~~~ 346 (961)
T PRK15101 281 YVPAQPRKVLRVEFRIDN--NSAKFRSKTDEYISYLIGNRSP-----------GTLSDWLQ-KQGLAEGISAGADPMVDR 346 (961)
T ss_pred EEECCCCcEEEEEEecCC--cHHHHhhCHHHHHHHHhcCCCC-----------CcHHHHHH-HcCccceeeeccccccCC
Confidence 345567788899999876 22 1123356789999997643 56776664 789999999876543 4
Q ss_pred CcceEEEEEEeCcc---hHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHHHcCCC
Q 010516 379 HSGMFGIQGTTGSD---FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMN-LESRMVVSEDIGRQVLTYGER 454 (508)
Q Consensus 379 ~~g~~~i~~~~~p~---~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~-~~s~~~~~~~~~~~~~~~g~~ 454 (508)
+.|.|.|++.+.++ +.+++++.+.++|+.+++ .+++++||+++|+.+...+... ..++...+..+...+. ...+
T Consensus 347 ~~g~f~i~~~~~~~~~~~~~~v~~~i~~~i~~l~~-~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 424 (961)
T PRK15101 347 NSGVFAISVSLTDKGLAQRDQVVAAIFSYLNLLRE-KGIDKSYFDELAHVLDLDFRYPSITRDMDYIEWLADTML-RVPV 424 (961)
T ss_pred CceEEEEEEEcChHHHHhHHHHHHHHHHHHHHHHh-cCCcHHHHHHHHHHHhccccCCCCCChHHHHHHHHHHhh-hCCH
Confidence 67899999999884 788999999999999999 7899999999999988777432 2333444455555442 2222
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHhc-CCceEEEEcCC
Q 010516 455 KPVEHFLKTVEGVTAKDIASVAQKLLS-SPLTMASYGDV 492 (508)
Q Consensus 455 ~~~~~~~~~i~~vT~~Di~~~a~~~l~-~~~~~~~~G~~ 492 (508)
.........++.+++++|+++++. |. ++..++++++.
T Consensus 425 ~~~l~~~~~~~~~~~~~i~~~~~~-l~~~n~~i~~~~~~ 462 (961)
T PRK15101 425 EHTLDAPYIADRYDPKAIKARLAE-MTPQNARIWYISPQ 462 (961)
T ss_pred HHheeCchhhhcCCHHHHHHHHhh-cCHhHEEEEEEeCC
Confidence 223445577899999999999987 56 88888888875
No 6
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=100.00 E-value=4.9e-37 Score=289.32 Aligned_cols=406 Identities=28% Similarity=0.434 Sum_probs=332.6
Q ss_pred ceEEEEcCCCcEEEEeeCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeEEeecc
Q 010516 78 KTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 157 (508)
Q Consensus 78 ~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 157 (508)
......|.||++|...+.++++.++.+.|++||++|+..+.|++||++...++.|++++...+.+..+..|++++..++|
T Consensus 22 ~~~~~kl~ngL~Vas~e~~~~is~l~l~~~AGSRYe~~~~~G~sHllr~f~g~~Tq~~sal~ivr~se~~GG~Lss~~tR 101 (429)
T KOG2583|consen 22 ISKTTKLVNGLTVASREAPTAISSLSLAFRAGSRYEPADQQGLSHLLRNFVGRDTQERSALKIVRESEQLGGTLSSTATR 101 (429)
T ss_pred hhhhhccccceEEEeccCCCcceEEEEEEecCccCCccccccHHHHHHHhcccCccccchhhhhhhhHhhCceeeeeeec
Confidence 44567789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHH-HHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChH
Q 010516 158 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQL-TKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPES 236 (508)
Q Consensus 158 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k-~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~ 236 (508)
|.+.|+++++.++++..+.+|.+.+.+|.|.+||++... ..+..++. ..+|+..+++.+|+.+|.+.++++++.+.-
T Consensus 102 e~~~~tvt~lrd~~~~~l~~L~~V~~~paFkPwEl~D~~~~ti~~~l~--~~t~~~~a~e~lH~aAfRngLgnslY~p~~ 179 (429)
T KOG2583|consen 102 ELIGLTVTFLRDDLEYYLSLLGDVLDAPAFKPWELEDVVLATIDADLA--YQTPYTIAIEQLHAAAFRNGLGNSLYSPGY 179 (429)
T ss_pred ceEEEEEEEecccHHHHHHHHHHhhcccCcCchhhhhhhhhhhHHHhh--hcChHHHHHHHHHHHHHhcccCCcccCCcc
Confidence 999999999999999999999999999999999999988 55555444 478999999999999997789999988888
Q ss_pred HhccCCHHHHHHHHHhhcCCCCeEEEEcCCCHHHHHHHHHhhhcCCCCCCCCCCCCCccCCCeeEeeCCCCceEEEEEee
Q 010516 237 AINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGLTHFVLAFE 316 (508)
Q Consensus 237 ~l~~l~~~~l~~f~~~~~~~~~~~l~i~Gv~~e~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 316 (508)
.+.+++.++|.+|.+++|...|++++.+|+||+.++..+++++ .++.+.+.......|.+++.+........+++++-+
T Consensus 180 ~vg~vss~eL~~Fa~k~fv~gn~~lvg~nvd~~~L~~~~~~~~-~~~~~~~~k~a~a~~~gGe~Rk~~~g~~~~v~vage 258 (429)
T KOG2583|consen 180 QVGSVSSSELKDFAAKHFVKGNAVLVGVNVDHDDLKQFADEYA-PIRDGLPLKPAPAKYSGGEARKDARGNRVHVAVAGE 258 (429)
T ss_pred cccCccHHHHHHHHHHHhhccceEEEecCCChHHHHHHHHHhc-cccCCCCCCCCCccccCCccccccCCceeEEEEecC
Confidence 8999999999999999999999999999999999999999983 344333333334578899998777777888877655
Q ss_pred cCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcceEEEEEEeCcchHHH
Q 010516 317 LPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSK 396 (508)
Q Consensus 317 ~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~i~~~~~p~~~~~ 396 (508)
.-.. .+.+...+..++.+.|+... |=|==.+-|-.-.-.-.+..-+++|++.+|.|.|+|++|+.....++.+
T Consensus 259 gAAa-~~~k~~~a~av~~~~Lg~~~------~~k~~t~~~~~aa~~a~~~~~s~sA~~a~ysDsGL~gv~~~~~~~~a~~ 331 (429)
T KOG2583|consen 259 GAAA-GNLKVLAAQAVLLAALGNSA------PVKRGTGLLSEAAGAAGEQGASASAFNAPYSDSGLFGVYVSAQGSQAGK 331 (429)
T ss_pred cccc-cchHHHHHHHHHHHHHhccc------ccccccchHHHHHhhccccCceeeeecccccCCceEEEEEEecCccHHH
Confidence 4431 35678888899999998642 1000012333223233334567789999999999999999998888888
Q ss_pred HHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCHHHHHHHH
Q 010516 397 AIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVA 476 (508)
Q Consensus 397 ~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vT~~Di~~~a 476 (508)
++......++..+. ..++-.....+++.++....+..+.... ... .. .+..-....+++.|++||..||++++
T Consensus 332 ~v~s~v~~lks~~~-~~id~~~~~a~~~~l~~~~~ss~~a~~~---~~~--~~-a~~~~~~d~~i~~id~Vt~sdV~~a~ 404 (429)
T KOG2583|consen 332 VVSSEVKKLKSALV-SDIDNAKVKAAIKALKASYLSSVEALEL---ATG--SQ-ANLVSEPDAFIQQIDKVTASDVQKAA 404 (429)
T ss_pred HHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHhhcchHHHHH---hhH--HH-hcCCCChHHHHHHhccccHHHHHHHH
Confidence 99888888888777 5577777777777766666555444221 111 11 22222568999999999999999999
Q ss_pred HHHhcCCceEEEEcCCCCCCCHHH
Q 010516 477 QKLLSSPLTMASYGDVINVPSYDA 500 (508)
Q Consensus 477 ~~~l~~~~~~~~~G~~~~~p~~~~ 500 (508)
++++..++.++.+|+...+|-+++
T Consensus 405 kk~~s~kls~aA~Gnl~~vPY~DE 428 (429)
T KOG2583|consen 405 KKFLSGKLSLAAYGNLSNVPYLDE 428 (429)
T ss_pred HHhccCcceeeeeccccCCccccc
Confidence 999999999999999999998876
No 7
>PRK15101 protease3; Provisional
Probab=100.00 E-value=6.1e-36 Score=337.86 Aligned_cols=414 Identities=10% Similarity=0.066 Sum_probs=328.3
Q ss_pred CCCCCCCCCCCCCCCCCCCC---CCCCCceEEEEcCCCcEEEEeeCC----CCeEEEEEEEcccccCCCCCCCcHHHHHH
Q 010516 53 SSPSLDFPLPGVSLPPSLPD---YVEPGKTKISTLPNGVKIASETSV----SPVASISLYVGCGSIYESPISFGTTHLLE 125 (508)
Q Consensus 53 ~~~~l~~pl~~~~~p~~~~~---~~~~~~~~~~~L~NGl~v~~~~~~----~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~ 125 (508)
..+.+.+|-+|.++|+++.. ......++.+.++||++||+++++ .|++.+.+.+.+|...+++...|++.|+.
T Consensus 494 ~~~~l~lP~~n~fip~~~~~~~~~~~~~~p~~i~~~~g~~vw~~~d~~f~~~Pk~~i~~~~~~~~~~~~~~~~~l~~L~~ 573 (961)
T PRK15101 494 QNIALSLPELNPYIPDDFSLIKADKAYKHPELIVDEPGLRVVYMPSQYFADEPKADISLVLRNPKAMDSARNQVLFALND 573 (961)
T ss_pred CCccCCCCCCCCccCCCCeeccCCCCCCCCeEEEcCCCeEEEEeCCCccccCCCEEEEEEEeCCCccCCHHHHHHHHHHH
Confidence 34568899999999988422 222345788999999999987665 48999999999999999999999999999
Q ss_pred HhhccCCCCCChHHHHHHHHHcCCeeEEeecceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHh
Q 010516 126 RMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISE 205 (508)
Q Consensus 126 ~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~ 205 (508)
.|+.. +..++.+..+..|.+++.+ +.+++.+++++++++++.+|+++.+.+.+|.|++++|+++|+.+.+++++
T Consensus 574 ~ll~~-----~l~e~~y~a~~aG~~~~~~-~~~g~~i~v~g~s~~l~~ll~~l~d~l~~~~~~~~~fe~~k~~~~~~l~~ 647 (961)
T PRK15101 574 YLAGL-----ALDQLSNQASVGGISFSTN-ANNGLMVNANGYTQRLPQLLQALLEGYFSFTPTEEQLAQAKSWYREQLDS 647 (961)
T ss_pred HHHHH-----HHHHHhchHHhcCcEEEEc-cCCCEEEEEEecChhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh
Confidence 99733 5667788888899999999 79999999999999999999999999999999999999999999999998
Q ss_pred hc-CChHHHHHHHHHHHhcCC-CCCCCCCCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCC
Q 010516 206 VS-NNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDL 282 (508)
Q Consensus 206 ~~-~~p~~~~~~~l~~~~~~~-~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~l 282 (508)
.. ..|...+...+. .+.+ ||+.+ .++.+.|+++|.+|+++|++++|.+.+++++|+| ++.+++.++++++++.+
T Consensus 648 ~~~~~~~~~~~~~~~--~~~~~py~~~-~~~~~~l~~it~edl~~f~~~~~~~~~~~~~v~GNi~~~ea~~l~~~~~~~l 724 (961)
T PRK15101 648 AEKGKAYEQAIMPAQ--MLSQVPYFER-DERRKLLPSITLKDVLAYRDALLSGATPEFLVVGNLTEEQVTTLARDVQKQL 724 (961)
T ss_pred hcccCcHHHHHHHHH--HHhcCCCCCH-HHHHHHHhcCCHHHHHHHHHHHHHhceEEEEEEcCCCHHHHHHHHHHHHHHh
Confidence 54 445544444332 2434 77764 5688999999999999999999999999999999 99999999999998888
Q ss_pred CCCCCCC-CC--CCccCCCeeE--eeCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHH
Q 010516 283 PSIHPRE-EP--KSVYTGGDYR--CQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLY 357 (508)
Q Consensus 283 p~~~~~~-~~--~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~ 357 (508)
+..+... .. .....+.... ......+..+.+.|..++ . +.....+++.||+++ |++|||
T Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~----~~~~~~v~~~lLg~~-----------~ssrlf 788 (961)
T PRK15101 725 GADGTEWWRGKDVVVDKKQSVNFEKAGSSTDSALAAVYVPTG-Y----DEYQSSAYSSLLGQI-----------IQPWFY 788 (961)
T ss_pred ccCCcccccccceEeCCCCeEEEecCCCCCCCeEEEEEEeCC-C----CCHHHHHHHHHHHHH-----------HhHHHH
Confidence 6532210 10 0011112222 223344555666664444 2 236677888888865 559999
Q ss_pred HHHHhhCCCeEEEEEeecCCCCcceEEEEEEeC---cchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhc
Q 010516 358 RRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTG---SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNL 434 (508)
Q Consensus 358 ~~lR~~~~~~Y~v~a~~~~~~~~g~~~i~~~~~---p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~ 434 (508)
++||++.|++|+|+++.....+.+.+.++++++ |+.+.+.++.+.+++.+... ++|++||+++|+++++.+....
T Consensus 789 ~~LRtk~qLgY~V~s~~~~~~~~~~~~~~vqs~~~~~~~l~~~i~~f~~~~~~~l~--~lt~eE~~~~k~~l~~~~~~~~ 866 (961)
T PRK15101 789 NQLRTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPAYLWQRYQAFFPQAEAKLR--AMKPEEFAQYQQALINQLLQAP 866 (961)
T ss_pred HHHHHHhhhceEEEEEeeccCCeeeEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999988777777777777665 67788888888888655444 4999999999999999999999
Q ss_pred cChHHHHHHHHHHHHHcCCCCC-HHHHHHHHhcCCHHHHHHHHHHH-hc-CC--ceEEEEcCCC
Q 010516 435 ESRMVVSEDIGRQVLTYGERKP-VEHFLKTVEGVTAKDIASVAQKL-LS-SP--LTMASYGDVI 493 (508)
Q Consensus 435 ~s~~~~~~~~~~~~~~~g~~~~-~~~~~~~i~~vT~~Di~~~a~~~-l~-~~--~~~~~~G~~~ 493 (508)
++....+.++|..+..++.+++ .+++.+.|++||++||+++++++ +. ++ .++.+.|...
T Consensus 867 ~sl~~~a~~~~~~i~~~~~~fd~~~~~~~~i~~vT~edv~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (961)
T PRK15101 867 QTLGEEASRLSKDFDRGNMRFDSRDKIIAQIKLLTPQKLADFFHQAVIEPQGLAILSQISGSQN 930 (961)
T ss_pred CCHHHHHHHHHHHHhcCCCCcChHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCEEEEEeeccCc
Confidence 9999999999999875555554 78999999999999999999998 65 44 3345556543
No 8
>PTZ00432 falcilysin; Provisional
Probab=100.00 E-value=1.3e-33 Score=316.05 Aligned_cols=387 Identities=15% Similarity=0.112 Sum_probs=299.0
Q ss_pred CceEEEEcCCCcEEEEeeCCC---CeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcC--Cee
Q 010516 77 GKTKISTLPNGVKIASETSVS---PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIG--GNV 151 (508)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~~~---~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g--~~~ 151 (508)
..+...-..||++|++..++. +.+.+.++|+.|+. ...|++|++|||+|+|+++++..++...++..| +.+
T Consensus 90 ~~~~~~H~~nGl~vl~~~~~d~~~~~~~f~i~f~T~~~----d~~G~aH~LEH~~f~GS~k~p~~~~~~~l~~~gl~~~l 165 (1119)
T PTZ00432 90 VATVYSHKKTGLQVISLKTNDSSGKEMCFDFYVPTPPH----NDKGIPHILEHSVLSGSKKYNYKDSFSLLVQGGFNSFL 165 (1119)
T ss_pred EEEEEEEcCCCCEEEEEecCCCccceeEEEEEecCCCC----CCcchhHHHHHHHhCCCCCCCcccHHHHHHhcCcCCCc
Confidence 355666678999999866554 47889999999973 458999999999999999999999999998866 679
Q ss_pred EEeecceeEEEEEEcccC-ChHHHHHHHHHhhhCCCCCHHHH--HH---------H--------------------HHHH
Q 010516 152 QASASREQMGYSFDALKT-YVPEMVELLIDCVRNPVFLDWEV--NE---------Q--------------------LTKV 199 (508)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~-~l~~~l~ll~~~~~~p~f~~~~~--~~---------~--------------------k~~~ 199 (508)
|++|+.+++.|.+.+.++ ++..+++++.+.+.+|.|+++++ .+ . +..+
T Consensus 166 NA~T~~D~T~Y~~~~~~e~d~~~~ldv~~d~v~~P~~~~~~~~f~qEgwh~E~~~~~~~~~~~~e~~~~~~~~l~~kgVV 245 (1119)
T PTZ00432 166 NAYTFKDRTSYLFASTNEKDFYNTADVYMDSVFQPNILEDKDIFKQEGWHYKVTKLKDDEKNADELGNVHDRHVSYSGIV 245 (1119)
T ss_pred cccCCCCceEEEeccCCHHHHHHHHHHHHHHHhCcCcccccchhhhhhhhccccccccccccccccccccccccchhhHH
Confidence 999999999999999885 79999999999999999988763 22 1 7789
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhcCC-CCCCCCCCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHh
Q 010516 200 KSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEP 277 (508)
Q Consensus 200 ~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~ 277 (508)
.+|++...++|...+.+.+.+.+| + ||+++..|++++|..++.+++++||+++|+|+|++++++| +++++++.++++
T Consensus 246 ~~Emk~~~~~p~~~~~~~~~~~lf-~~pY~~~~~G~~~~I~~lt~e~l~~Fh~~~Y~P~N~~l~v~Gdid~~~~l~~l~~ 324 (1119)
T PTZ00432 246 YSEMKKRFSDPLSFGYSVIYQNLF-SNVYKYDSGGDPKDIVELTYEELVEFYKTYYGPKTATVYFYGPNDVTERLEFVDN 324 (1119)
T ss_pred HHHHHHhhCCHHHHHHHHHHHHHh-CCCCCCCCCCChHhhccCCHHHHHHHHHHhcCccceEEEEEcCCCHHHHHHHHHH
Confidence 999999999999999999999999 7 9999999999999999999999999999999999999999 999999999999
Q ss_pred hhcCCCCCCCC------C---CCCC--c-cCCCe-eEe---eCCCCceEEEEE-eecCCCC----------CCCcchHHH
Q 010516 278 LLSDLPSIHPR------E---EPKS--V-YTGGD-YRC---QADSGLTHFVLA-FELPGGW----------HKDKDAMTL 330 (508)
Q Consensus 278 ~~~~lp~~~~~------~---~~~~--~-~~~~~-~~~---~~~~~~~~v~~~-~~~~~~~----------~~~~~~~~~ 330 (508)
+|+.+|..... . .+.+ . +.+.. ... ..+.++.++.++ |..+++. .+.++..++
T Consensus 325 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~e~~~l~~~~w~~~p~~~~~~~~~~~~~d~~~~~AL 404 (1119)
T PTZ00432 325 YLTKHPKTGQLSHTAYREDADENLLYEEYKDKPKHVKKKFSSHSEEEENLMSVSWLLNPKHNGSKDYDKSLIDPVDYLAL 404 (1119)
T ss_pred HHhhcccccccccccccccccccccccccccCCeEEEeccCCCccccccEEEEEEEcCCccccccccccccCCHHHHHHH
Confidence 99888754211 0 0011 1 11111 111 123345666665 9774210 123578999
Q ss_pred HHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEE-EEeecCCCCcceEEEEEE-eCc-------chHHHHHHHH
Q 010516 331 TVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSF-SAFSNIYNHSGMFGIQGT-TGS-------DFVSKAIDLA 401 (508)
Q Consensus 331 ~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v-~a~~~~~~~~g~~~i~~~-~~p-------~~~~~~~~~~ 401 (508)
.||+.||+++++ ++|++.||+ .|++|++ +++.....+.+.|.|++. +++ +.++++.+.+
T Consensus 405 ~VLs~lLggg~s-----------S~L~q~LrE-~GLa~svv~~~~~~~~~~~~f~I~l~g~~~~~~~~~~~~~~ev~~~I 472 (1119)
T PTZ00432 405 LVLNYLLLGTPE-----------SVLYKALID-SGLGKKVVGSGLDDYFKQSIFSIGLKGIKETNEKRKDKVHYTFEKVV 472 (1119)
T ss_pred HHHHHHHcCCCc-----------cHHHHHHHh-cCCCcCCCcCcccCCCCceEEEEEEEcCChHhccchhhhHHHHHHHH
Confidence 999999998865 999999996 7999986 344444567788888875 442 3467899999
Q ss_pred HHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccC----hHHHHHHHHHHHHHcCCCCC---HHHHHHHHhc---CCHHH
Q 010516 402 ARELISVATPGEVDQVQLDRAKQSTKSAILMNLES----RMVVSEDIGRQVLTYGERKP---VEHFLKTVEG---VTAKD 471 (508)
Q Consensus 402 ~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s----~~~~~~~~~~~~~~~g~~~~---~~~~~~~i~~---vT~~D 471 (508)
.++|+++.+ +++++++|+++++++...+...... ....+..+...++.++.+.. .+...+.|+. -+..-
T Consensus 473 ~~~L~~l~~-eGi~~eele~a~~qlef~~rE~~~~~~p~gl~~~~~~~~~~~~g~dp~~~l~~~~~l~~lr~~~~~~~~y 551 (1119)
T PTZ00432 473 LNALTKVVT-EGFNKSAVEASLNNIEFVMKELNLGTYPKGLMLIFLMQSRLQYGKDPFEILRFEKLLNELKLRIDNESKY 551 (1119)
T ss_pred HHHHHHHHH-hCCCHHHHHHHHHHHHHHhhhccCCCCCcHHHHHHHHHHHHhcCCCHHHHHhhHHHHHHHHHHHhcccHH
Confidence 999999998 7899999999999988877654321 23455566666663444433 2222333321 12346
Q ss_pred HHHHHHHHhc
Q 010516 472 IASVAQKLLS 481 (508)
Q Consensus 472 i~~~a~~~l~ 481 (508)
+++++++||-
T Consensus 552 ~e~Li~k~ll 561 (1119)
T PTZ00432 552 LEKLIEKHLL 561 (1119)
T ss_pred HHHHHHHHcc
Confidence 8899999987
No 9
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.1e-27 Score=250.72 Aligned_cols=402 Identities=17% Similarity=0.201 Sum_probs=310.0
Q ss_pred CCCCceEEEEcCCCcEEEEeeCCC-CeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCh-HHHHHHHHHcCCee
Q 010516 74 VEPGKTKISTLPNGVKIASETSVS-PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH-LRIVREVEAIGGNV 151 (508)
Q Consensus 74 ~~~~~~~~~~L~NGl~v~~~~~~~-~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~-~~l~~~l~~~g~~~ 151 (508)
.....++..+|+|||++.+..++. +++...+.|+.|+..+|.+..|+||++|||+|.|+++|+. ..+..+|+.+||+.
T Consensus 19 ~d~r~y~~I~LpNGl~~LlisDP~a~ks~aAL~V~vGs~~DP~e~~GLAHflEHmlfmGseKYP~~~~f~~fLskhgGs~ 98 (937)
T COG1025 19 LDDRKYRAIKLPNGLRALLVSDPQADKSSAALVVPVGSFDDPEEYPGLAHFLEHMLFMGSEKYPDEGGFSEFLSKHGGSH 98 (937)
T ss_pred ccCcceeEEECCCCceEEEecCCCCCccceeEEeecCCCCChhhcccHHHHHHHHHHhcCccCCCccchHHHHHHcCCcc
Confidence 344689999999999999877664 6999999999999999999999999999999999999875 67899999999999
Q ss_pred EEeecceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCCCC
Q 010516 152 QASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANP 230 (508)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~ 230 (508)
|++|..+.|.|.++..++.++.+|+.+++.|.+|.|+++..++++..|.+|......+-...+.......+-++ |+.+.
T Consensus 99 NA~T~~~~T~fyFeV~~~al~~ALDrFa~ff~~PLf~~e~~dRE~~AV~sE~~~~~~~D~~R~~~~~~~~~np~HP~srF 178 (937)
T COG1025 99 NASTAGERTAFYFEVENDALEGALDRFADFFIEPLFNKEALDRERNAVNSEFTMNLTSDGWRMYQVQALTANPGHPLSKF 178 (937)
T ss_pred ccccCCCceeEEEEecHHHHHHHHHHHHHHHhccccChHHHHHHHHHHHHHHhcCcCchHHHHHHHHHhhcCCCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999877766666666666666666 99998
Q ss_pred CCCChHHhcc----CCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCCCCCCCCCCC--Ccc----CCCe
Q 010516 231 LLAPESAINR----LNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK--SVY----TGGD 299 (508)
Q Consensus 231 ~~~~~~~l~~----l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp~~~~~~~~~--~~~----~~~~ 299 (508)
..|..++|.. -..+++.+||+++|.+++|+++|.| -+.+++.+++.++|+.+|......++. |.+ .+..
T Consensus 179 s~GN~~TL~~~p~~~v~~el~ef~~~~YSa~~M~lviyg~q~ldeL~~~a~~~F~~Ipn~~~~~p~~p~p~~~d~~t~~i 258 (937)
T COG1025 179 STGNLETLSDKPGLVVQQELKEFHEKHYSANNMKLVIYGNQPLDELAKLAADLFGDIPNRARKIPPIPVPVVTDEQTGKI 258 (937)
T ss_pred CCCChhhhccCCCchHHHHHHHHHHHhcChhheEEEEecCCCHHHHHHHHHHHhCcCCCCCCCCCCCCCCCCChHHhCce
Confidence 8999999988 4578999999999999999999999 999999999999999999766554332 322 3444
Q ss_pred eEeeCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCC-
Q 010516 300 YRCQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYN- 378 (508)
Q Consensus 300 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~- 378 (508)
+++.+..+...+.+.|+.+... ..-..-....+..|+|..+. +-|- ....+.||+-++.|+.....
T Consensus 259 i~i~p~~~~~~L~i~f~i~~~~-~~~~~~~~~~~s~Lig~es~-----------gsL~-~~Lk~~Glit~l~a~~~~~~~ 325 (937)
T COG1025 259 IHIVPAKPRPRLRIYFPIDDNS-AKFRSKPDEYLSHLIGNESP-----------GSLL-AWLKKQGLITELSAGLDPISG 325 (937)
T ss_pred EEeccCCCCceEEEEEEcCCcc-cccccCCHHHHHHHhccCCC-----------chHH-HHHHhccchhhhccccccccC
Confidence 5566777888899999998732 21224456788888887643 3443 34457799999999887655
Q ss_pred CcceEEEEEEe---CcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCC
Q 010516 379 HSGMFGIQGTT---GSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERK 455 (508)
Q Consensus 379 ~~g~~~i~~~~---~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~ 455 (508)
+.|.|.|...- .-++.++++..+.+.+.-+.. .++....++....-. ++...+.+...-+.............
T Consensus 326 n~~~f~is~~LT~~Gl~~~~~VI~~~F~yl~~l~~-~~~~~~~f~Elq~v~--~l~f~y~~~t~~~~~~~~l~~~m~~~- 401 (937)
T COG1025 326 NYGVFAISYELTDKGLAHYDRVIALTFQYLNLLRE-KGIPKYTFDELQNVL--DLDFRYPSKTRPMDYVSWLADNMERE- 401 (937)
T ss_pred CcceEEEEeehhhcchhhHHHHHHHHHHHHHHHHh-ccchhhHHHHHHHHH--HhhhcccccCChHHHHHHHHHhcccC-
Confidence 67777776543 246778889999998888887 567777776654443 33333333222222222222222222
Q ss_pred CHHHH---HHHHhcCCHHHHHHHHHHHhcCCceEEEEcCC
Q 010516 456 PVEHF---LKTVEGVTAKDIASVAQKLLSSPLTMASYGDV 492 (508)
Q Consensus 456 ~~~~~---~~~i~~vT~~Di~~~a~~~l~~~~~~~~~G~~ 492 (508)
+++.+ .-.+..-..++++.+..-+.-++..+...++.
T Consensus 402 p~~~~~~~~~~~~~yd~~~~~~~l~~~~pen~R~~lis~~ 441 (937)
T COG1025 402 PVEHTLYASLVLPRYDPKAIQERLALMTPENARLWLISKL 441 (937)
T ss_pred ChhhhhchhhcccccCHHHHHHHHHhhCccceEEEEecCC
Confidence 33433 34467777888988887655466666666543
No 10
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=6.1e-27 Score=249.45 Aligned_cols=398 Identities=16% Similarity=0.143 Sum_probs=307.6
Q ss_pred CceEEEEcCCCcEEEEeeCCC-CeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCh-HHHHHHHHHcCCeeEEe
Q 010516 77 GKTKISTLPNGVKIASETSVS-PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH-LRIVREVEAIGGNVQAS 154 (508)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~~~-~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~-~~l~~~l~~~g~~~~~~ 154 (508)
-..+...|+||+++.+..++. ++.+..+-|..||..+|.+..|+||++|||+|.|+.+|+. +++..++..+||..||+
T Consensus 26 r~yr~~~L~Ngl~alLisDp~tD~ssaal~V~vGS~~DP~dl~GLAHF~EHMlFmGS~KYP~En~y~~~lsk~gGssNA~ 105 (974)
T KOG0959|consen 26 REYRGIELTNGLRALLISDPKTDKSSAALDVKVGSFSDPEDLQGLAHFCEHMLFMGSEKYPDENEYSKFLSKNGGSSNAY 105 (974)
T ss_pred cceeEEEecCCceEEEecCCCCCccceeeeeeccccCCccccccHHHHHHHHHhhccccCCCcchhHHHHHhcCCccccc
Confidence 478999999999999876664 4888999999999999999999999999999999999874 67788999999999999
Q ss_pred ecceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCCCCCCC
Q 010516 155 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLA 233 (508)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~ 233 (508)
|+.++|.|.+....++++.+|+.+++.+..|.|++++.++++..+..|.++..++-............-++ +++....|
T Consensus 106 T~~e~T~y~F~V~~~~l~~ALDrFaqFf~~Plf~~~a~eREv~AVdSE~~~nl~~D~wr~~ql~~~l~~~~hp~~kF~tG 185 (974)
T KOG0959|consen 106 TDSEHTNYYFDVQHDHLEGALDRFAQFFSDPLFNKSATEREVGAVDSEHEKNLNSDGWRFDQLLRSLSNPGHPYSKFSTG 185 (974)
T ss_pred cccccceEEEecchHHHHHHHHHHHHHhhCcccChHHHHHHHHHHHHHHHhccCcchhHHHHHHHHhcCCCCcchhcccc
Confidence 99999999999999999999999999999999999999999999999999987777777777777766677 99999999
Q ss_pred ChHHhccCC-----HHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCCCCCCCCCCC--Ccc----CCCeeE
Q 010516 234 PESAINRLN-----STLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK--SVY----TGGDYR 301 (508)
Q Consensus 234 ~~~~l~~l~-----~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp~~~~~~~~~--~~~----~~~~~~ 301 (508)
..+.|.... .+.|.+||++||.+++|+++|+| .+.+.+..++.+.|+.+++...+.+.- +++ .++.+.
T Consensus 186 N~~tL~~~p~~~~~r~~L~kF~k~~Yssn~M~l~i~G~eslD~Le~lv~~~F~~i~N~~~~~p~f~~~p~~~e~~~~~~~ 265 (974)
T KOG0959|consen 186 NKKTLLEGPREIDLRDELLKFYKNWYSSNIMTLVIVGKESLDVLESLVTRLFDEISNKKKPRPVFPEPPFLPEELKKLVR 265 (974)
T ss_pred chhhhhhccccchHHHHHHHHHHhhcccccceEEEEcCCChhHHHHHHHHHcccccccCCCCCcccCCCCChHHhCcEEE
Confidence 999999998 89999999999999999999999 999999999999999998776654322 222 234455
Q ss_pred eeCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecC-CCCc
Q 010516 302 CQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNI-YNHS 380 (508)
Q Consensus 302 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~-~~~~ 380 (508)
+.+-.....+.+.|+.|+.. ..-+.-....+..++|.-|. +-|...|+ ..||+-++.++... ..+.
T Consensus 266 v~pik~~~~l~is~~~p~~~-~~y~~kP~~y~~hLigheg~-----------GSL~~~Lk-~~gw~~sl~a~~~~~as~~ 332 (974)
T KOG0959|consen 266 VVPIKDGRSLMISWPVPPLN-HHYKSKPLRYLSHLIGHEGP-----------GSLLSYLK-RLGWATSLEAGIPEFASGY 332 (974)
T ss_pred EEeccccceEEEEEecCCcc-cccccCcHHHHHHHhccCCc-----------chHHHHHH-HhhchheeecCCCcccccc
Confidence 66777788888999999732 33345566788888887654 56666777 46999999888763 3355
Q ss_pred ceEEEEEEeC---cchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHh---ccChHHHHHHHHHHHHHcCCC
Q 010516 381 GMFGIQGTTG---SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMN---LESRMVVSEDIGRQVLTYGER 454 (508)
Q Consensus 381 g~~~i~~~~~---p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~---~~s~~~~~~~~~~~~~~~g~~ 454 (508)
+.|.+.+.-. -+++++++..+.+-+..+.+ .+..+.-++. .+.+...... .+.+...+..+...+. +-+.
T Consensus 333 ~~f~v~idLtd~G~e~~~~ii~~~f~yi~~l~~-~~~~~~i~~E--~~~~~~~~Frf~~k~~p~~~~~~~~~nlq-~~P~ 408 (974)
T KOG0959|consen 333 SFFNVSIDLTDEGLEHVDEIIGLVFNYIKLLQS-AGPEKWIFKE--LQLISEVKFRFQDKEPPMEYASEIASNLQ-YYPV 408 (974)
T ss_pred ceEEEEEEeccccchhHHHHHHHHHHHHHHHHh-cCchhHHHHH--HHHhhhhheeecccCCcHHHHHHHHhhcc-cCCh
Confidence 6666655433 46778888888888887776 3233222222 2223333322 2345555555655443 2222
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHhcCCceEEEEcC
Q 010516 455 KPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGD 491 (508)
Q Consensus 455 ~~~~~~~~~i~~vT~~Di~~~a~~~l~~~~~~~~~G~ 491 (508)
.+.-.....+....++-|+.+...+-..+..+.+++.
T Consensus 409 ~~il~~~~ll~~~~p~~i~~~~~~L~p~n~~v~~~s~ 445 (974)
T KOG0959|consen 409 EDVLTGSYLLTEFDPDLIQEVLSSLVPSNMRVILVSR 445 (974)
T ss_pred HHhhcchhhhhhcChHHHHHHHHhcCcccceeeeeee
Confidence 2233344568888889998888666556666655553
No 11
>COG1025 Ptr Secreted/periplasmic Zn-dependent peptidases, insulinase-like [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.1e-24 Score=228.37 Aligned_cols=412 Identities=12% Similarity=0.121 Sum_probs=324.8
Q ss_pred CCCCCCCCCCCCCCCCCCC---CCCCCceEEEEcCCCcEEEEeeCC---C-CeEEEEEEEcccccCCCCCCCcHHHHHHH
Q 010516 54 SPSLDFPLPGVSLPPSLPD---YVEPGKTKISTLPNGVKIASETSV---S-PVASISLYVGCGSIYESPISFGTTHLLER 126 (508)
Q Consensus 54 ~~~l~~pl~~~~~p~~~~~---~~~~~~~~~~~L~NGl~v~~~~~~---~-~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~ 126 (508)
.+.+.+|.||.++|.+++. ...-..+....-..|.++|..+.+ . |++.+.+.|+......++.......|+..
T Consensus 474 ~~~l~lP~~N~fIp~~~~~~~~~~~~~~p~ll~~~~~~~~wy~~~d~F~~~PK~~v~~~irsp~~~~s~r~~Vl~~l~~~ 553 (937)
T COG1025 474 SIELSLPEPNPFIPDDVSLIKSEKKFTFPQLLSEDPNLRLWYLKEDYFAVEPKASVSLAIRSPHASRSPRNQVLTELYAY 553 (937)
T ss_pred cccccCCCCCCCCCccccccccccCCCCchhhhcCCCceEEEecCCccccCCcceeEEEEeCcccccCHHHHHHHHHHHH
Confidence 3457799999999988654 111123444444568888875433 4 89999999999999998888888888888
Q ss_pred hhccCCCCCChHHHHHHHHHcCCeeEEeecceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHh-
Q 010516 127 MAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISE- 205 (508)
Q Consensus 127 l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~- 205 (508)
+++. ...++.+.+...|.+++...+.+++.++++|+++.++++++.+.+.+..-.++++.|...|.++.+++++
T Consensus 554 la~d-----al~~~~y~A~~aG~sfs~~~~~~Gl~ltisGft~~lp~L~~~~l~~l~~~~~~~~~f~~~K~~~~~~~~~a 628 (937)
T COG1025 554 LAND-----ALDKLSYQASLAGLSFSLAANSNGLDLTISGFTQRLPQLLRAFLDGLFSLPVDEDRFEQAKSQLSEELKNA 628 (937)
T ss_pred HHHH-----HHHhhhhHHHhcceEEEeecCCCceEEEeeccccchHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh
Confidence 8865 3445666678889999999999999999999999999999999999999999999999999999999998
Q ss_pred hcCChHHHHHHHHHHHhcCCCCCCCCCCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCCC
Q 010516 206 VSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPS 284 (508)
Q Consensus 206 ~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp~ 284 (508)
...+|+.++.+.+...+-.+ .++.....+.+++++.+++.+|....+++......++| ++.+++..+++.....++.
T Consensus 629 ~~~~p~~~~~~~l~~l~~~~--~~s~~e~~~~l~~v~~~e~~~f~~~l~~~~~lE~lv~Gn~~~~da~~l~~~~~~~l~~ 706 (937)
T COG1025 629 LTGKPYRQALDGLTGLLQVP--YWSREERRNALESVSVEEFAAFRDTLLNGVHLEMLVLGNLTEADATNLAETLQKKLPA 706 (937)
T ss_pred hhcCCHHHHHHHhhhhhCCC--CcCHHHHHHHhhhccHHHHHHHHHHhhhccceeeeeeccchHHHHHHHHHHHHhhhcc
Confidence 56899999999888776643 22223356889999999999999999999999999999 9999999998877666664
Q ss_pred CCCCCCCCC---ccCCCeeE---eeCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHH
Q 010516 285 IHPREEPKS---VYTGGDYR---CQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYR 358 (508)
Q Consensus 285 ~~~~~~~~~---~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~ 358 (508)
........+ ...++... ..........++.+.... .+.++.+...++.+++. ..+|.
T Consensus 707 ~~s~~~~~~~~~~~~~~~~~~e~~~~~~~~an~~i~~~~~~--~~~~~~a~s~Ll~~l~~---------------~~ff~ 769 (937)
T COG1025 707 IGSTWYRNPSVYLLKGGTRIFETVGGESDSANAAILYPQQY--DEIKSSALSSLLGQLIH---------------PWFFD 769 (937)
T ss_pred cCCcccCCCceeccCCCeeEeeeccCCcccccceeEecccc--chHHHHHHHHHHHHHHh---------------HHhHH
Confidence 443211111 12233322 122233333344443332 23455555568888876 89999
Q ss_pred HHHhhCCCeEEEEEeecCCCCcceEEEEEEeC---cchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcc
Q 010516 359 RVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTG---SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLE 435 (508)
Q Consensus 359 ~lR~~~~~~Y~v~a~~~~~~~~g~~~i~~~~~---p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~ 435 (508)
+||+|.|++|.|+++.....++..+.|+++++ |+...+.++.|.+.+..... + +++++|+..|..+++++.....
T Consensus 770 ~LRTkeQLGY~Vfs~~~~v~~~~gi~f~vqS~~~~p~~L~~r~~~F~~~~~~~l~-~-ms~e~Fe~~k~alin~il~~~~ 847 (937)
T COG1025 770 QLRTKEQLGYAVFSGPREVGRTPGIGFLVQSNSKSPSYLLERINAFLETAEPELR-E-MSEEDFEQIKKALINQILQPPQ 847 (937)
T ss_pred HhhhhhhcceEEEecceeecCccceEEEEeCCCCChHHHHHHHHHHHHHHHHHHH-h-CCHHHHHHHHHHHHHHHHccCC
Confidence 99999999999999999888888889999987 67888999999999988887 4 9999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHcCCCCC-HHHHHHHHhcCCHHHHHHHHHHHhc----CCceEEEEcC
Q 010516 436 SRMVVSEDIGRQVLTYGERKP-VEHFLKTVEGVTAKDIASVAQKLLS----SPLTMASYGD 491 (508)
Q Consensus 436 s~~~~~~~~~~~~~~~g~~~~-~~~~~~~i~~vT~~Di~~~a~~~l~----~~~~~~~~G~ 491 (508)
+....+.++|..+..+...++ ++..++.++.+|.+++.+++...+. ..+.+.+.|+
T Consensus 848 nl~e~a~r~~~~~~~g~~~Fd~~ek~i~~vk~LT~~~l~~f~~~~l~~~~g~~l~~~i~g~ 908 (937)
T COG1025 848 NLAEEASRLWKAFGRGNLDFDHREKKIEAVKTLTKQKLLDFFENALSYEQGSKLLSHIRGQ 908 (937)
T ss_pred CHHHHHHHHHHHhccCCCCcCcHHHHHHHHHhcCHHHHHHHHHHhhcccccceeeeeeecc
Confidence 999999999966653333444 6889999999999999999998887 3455777784
No 12
>KOG0959 consensus N-arginine dibasic convertase NRD1 and related Zn2+-dependent endopeptidases, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=1.4e-22 Score=216.42 Aligned_cols=402 Identities=12% Similarity=0.112 Sum_probs=326.7
Q ss_pred CCCCCCCCCCCCCCCCCCC---CC-CCCCceEEEEcCCCcEEEEeeCC---CCeEEEEEEEcccccCCCCCCCcHHHHHH
Q 010516 53 SSPSLDFPLPGVSLPPSLP---DY-VEPGKTKISTLPNGVKIASETSV---SPVASISLYVGCGSIYESPISFGTTHLLE 125 (508)
Q Consensus 53 ~~~~l~~pl~~~~~p~~~~---~~-~~~~~~~~~~L~NGl~v~~~~~~---~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~ 125 (508)
..+.+.+|.||.++|.+.. .+ .+...+..+.-....++|++.++ -|++.+.+.+.+.-+...+...+++.++.
T Consensus 480 ~~~~l~lP~~nefI~t~f~~~~~~~~~~~~P~Li~~~~~~~lw~k~dd~f~~Pka~~~~~~~~p~~~~~~~~~~l~~l~~ 559 (974)
T KOG0959|consen 480 LNPELHLPTPNEFIPTDFSILPAPIPKLEYPVLISDTPFSELWYKQDDKFNVPKAYTKFDFICPGATQSPLNSVLSTLYV 559 (974)
T ss_pred ccccccCCCCCcccccccccccccCccccCCeeeecCCcceeEEecccccccchhheeeeecCcccccCHHHHHHHHHHH
Confidence 3477999999999997631 11 12233455555677899987655 38999999999999999999999999999
Q ss_pred HhhccCCCCCChHHHHHHHHHcCCeeEEeecceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHh
Q 010516 126 RMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISE 205 (508)
Q Consensus 126 ~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~ 205 (508)
.++.. ...+..+.+...|..+..+.+..+..+++.+++++++.+++.+.+.+.+...++..|+..++.+.+++++
T Consensus 560 ~~l~d-----~l~E~~Y~A~~aGl~~~~~~s~~G~~~~v~Gfnekl~~ll~~~~~~~~~f~~~~~rf~iike~~~~~~~n 634 (974)
T KOG0959|consen 560 RLLKD-----QLNEYLYPALLAGLTYSLSSSSKGVELRVSGFNEKLPLLLEKVVQMMANFELDEDRFEIIKELLKRELRN 634 (974)
T ss_pred HHHHH-----HHhHHHHHHHhccceEEeeecCCceEEEEeccCcccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhh
Confidence 99865 4456677788899999999999999999999999999999999999999999999999999999999999
Q ss_pred -hcCChHHHHHHHHHHHhcCCCCCCCCCCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCC
Q 010516 206 -VSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLP 283 (508)
Q Consensus 206 -~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp 283 (508)
...+|+.++.+.++..+-.. .|......+.++.++++++..|...++++..+.++|.| ++.+++..+++.....+
T Consensus 635 ~~~~~p~~~a~~~~~lll~~~--~W~~~e~~~al~~~~le~~~~F~~~~~~~~~~e~~i~GN~te~~A~~l~~~v~d~l- 711 (974)
T KOG0959|consen 635 HAFDNPYQLANDYLLLLLEES--IWSKEELLEALDDVTLEDLESFISEFLQPFHLELLIHGNLTEKEALQLLKSVLDIL- 711 (974)
T ss_pred hhhccHHHHHHHHHHHHhhcc--ccchHHHHHHhhcccHHHHHHHHHHHhhhhheEEEEecCcchHHHHHHHHHHHhhh-
Confidence 67889988888877766543 33333466889999999999999999999999999999 99999999876666555
Q ss_pred CCCCCCC-CC----------CccC-CCeeEe----eCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCC
Q 010516 284 SIHPREE-PK----------SVYT-GGDYRC----QADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGG 347 (508)
Q Consensus 284 ~~~~~~~-~~----------~~~~-~~~~~~----~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~ 347 (508)
+...+.. +. -..+ |..+.. +...+++.+...|++.. .+..+...+.++.+++.
T Consensus 712 ~~~~~~~~p~~~~~~~~~~~~~lp~G~~~~~~~~~n~~~~ns~i~~~~Q~~~--~~~~~~~~~~L~~~li~--------- 780 (974)
T KOG0959|consen 712 KSAAPNSRPLFRSEHLPRREIQLPNGDYYFYRHLLNKTDDNSCIEVYYQIGV--QDTRDNAVLGLLEQLIK--------- 780 (974)
T ss_pred hccCCCCccccccccCcccceeccCCceEEEEcccccCCCCceEEEEEEccc--chhHHHHHHHHHHHHhc---------
Confidence 2221111 10 1122 222221 23446888888888744 67788889999999998
Q ss_pred CCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcceEEEEEEeC--cchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHH
Q 010516 348 PGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTG--SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQS 425 (508)
Q Consensus 348 pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~i~~~~~--p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~ 425 (508)
.++|+.||++.+++|.|++......+.-.+.|.++++ ++.+++.|+.+.+.+.+... .+++++++.-+.+
T Consensus 781 ------ep~Fd~LRTkeqLGYiv~~~~r~~~G~~~~~i~Vqs~~~~~~le~rIe~fl~~~~~~i~--~m~~e~Fe~~~~~ 852 (974)
T KOG0959|consen 781 ------EPAFDQLRTKEQLGYIVSTGVRLNYGTVGLQITVQSEKSVDYLEERIESFLETFLEEIV--EMSDEEFEKHKSG 852 (974)
T ss_pred ------cchHHhhhhHHhhCeEeeeeeeeecCcceeEEEEccCCCchHHHHHHHHHHHHHHHHHH--hcchhhhhhhHHH
Confidence 8999999999999999999888766666666666654 78899999999999988887 4999999999999
Q ss_pred HHHHHHHhccChHHHHHHHHHHHHHcCCCCC-HHHHHHHHhcCCHHHHHHHHHHHhc
Q 010516 426 TKSAILMNLESRMVVSEDIGRQVLTYGERKP-VEHFLKTVEGVTAKDIASVAQKLLS 481 (508)
Q Consensus 426 ~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~-~~~~~~~i~~vT~~Di~~~a~~~l~ 481 (508)
++.....+..+......++|..+......++ .+..++++..+|++|+..+.+.++.
T Consensus 853 lI~~~~ek~~~l~~e~~~~w~ei~~~~y~f~r~~~~v~~l~~i~k~~~i~~f~~~~~ 909 (974)
T KOG0959|consen 853 LIASKLEKPKNLSEESSRYWDEIIIGQYNFDRDEKEVEALKKITKEDVINFFDEYIR 909 (974)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHHhhhhcchhhHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 9999999999999999999999985555555 4677888999999999999999986
No 13
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.92 E-value=1.7e-22 Score=212.82 Aligned_cols=394 Identities=12% Similarity=0.114 Sum_probs=297.5
Q ss_pred EEcCCCcEEEEeeCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCC--eeEEeeccee
Q 010516 82 STLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGG--NVQASASREQ 159 (508)
Q Consensus 82 ~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~--~~~~~~~~~~ 159 (508)
..-+.|+++++..++.+.....+.|+.-. ....|++|+|||+.++|+.+|+..+..-.+-.... -+||.|..|.
T Consensus 25 ~H~~TGa~l~hi~~~d~~~vFsi~F~T~p----~dstGVaHiLEHtvlcGS~kYPvkdPF~~ml~rSLntF~NA~T~~D~ 100 (978)
T COG1026 25 EHEKTGAELAHIKNEDPNNVFSIAFKTEP----HDSTGVAHILEHTVLCGSKKYPVKDPFFKMLKRSLNTFLNAFTFPDK 100 (978)
T ss_pred eeccCCceEEEecCCCcCceEEEEeecCC----CCCCCcchHHHHHhhhCCCCCCCCChHHHHHHHhHHHHHhhccCCCc
Confidence 33348999998777777777777776543 45679999999999999999998776555544332 3899999999
Q ss_pred EEEEEEccc-CChHHHHHHHHHhhhCCCCCHHHHHHH--------------HHHHHHHHHhhcCChHHHHHHHHHHHhcC
Q 010516 160 MGYSFDALK-TYVPEMVELLIDCVRNPVFLDWEVNEQ--------------LTKVKSEISEVSNNPQSLLLEAIHSAGYS 224 (508)
Q Consensus 160 ~~~~~~~~~-~~l~~~l~ll~~~~~~p~f~~~~~~~~--------------k~~~~~e~~~~~~~p~~~~~~~l~~~~~~ 224 (508)
|.|-+++.. +++-.++.+.+|.+.+|.+.++.|.++ +..|..|++....++..++.+.+.+.+|+
T Consensus 101 T~YP~sS~~~~Df~NLl~VYlDavf~PlL~~e~F~QEgwr~e~~~~~~l~~~GVVyNEMKGa~ss~~~~~~~~~~~slfp 180 (978)
T COG1026 101 TVYPASSANEKDFYNLLSVYLDAVFHPLLTKESFLQEGWRIEFKDESNLKYKGVVYNEMKGAYSSGESVLSRAMQQSLFP 180 (978)
T ss_pred ceeeccccCcchHHHHHHHHHHhhhCcccchHHHhhhhhccccCCCccceeeeEEeehhcccccCchhHHHHHHHHhhCC
Confidence 999998864 789999999999999999999999876 45667788888899999999999999998
Q ss_pred C-CCCCCCCCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhh-hcCCCCCCCCC--CCCCccC---
Q 010516 225 G-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPL-LSDLPSIHPRE--EPKSVYT--- 296 (508)
Q Consensus 225 ~-~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~-~~~lp~~~~~~--~~~~~~~--- 296 (508)
+ .|+....|.+..|..|+.+++++||+++|+|+|+.++++| ++.++.+..++.. +...+...... ++...+.
T Consensus 181 ~~ty~~~SGG~P~~I~~LtyE~~r~FHkk~Y~pSN~~i~~yGni~~~~~L~~iee~~l~~~~k~~~~~~i~~~~~~~~~~ 260 (978)
T COG1026 181 GTTYGVNSGGDPKNIPDLTYEEFRAFHKKHYHPSNCKIFVYGNIPTERLLDFIEEKVLRPFGKRELDVPIPDQKAFKKPR 260 (978)
T ss_pred CccccccCCCCcccccccCHHHHHHHHHHhCCccceEEEEECCCCHHHHHHHHHHhhhccccccccCCCCCcccccCccc
Confidence 7 8888888999999999999999999999999999999999 9999999999987 55554443111 1111111
Q ss_pred CCeeE--ee---CCCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCe-EEE
Q 010516 297 GGDYR--CQ---ADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQV-QSF 370 (508)
Q Consensus 297 ~~~~~--~~---~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~-Y~v 370 (508)
..... +. .+..++.+.+.|.++. ..+..+..++.||..+|-++.+ ++|.+.|.+. |++ +.+
T Consensus 261 ~~~~~ypi~~~~~de~q~~~~lsWl~~~-~~d~~~~lal~vL~~iLl~~~a-----------sPl~~~lies-glg~~~~ 327 (978)
T COG1026 261 RKVLEYPISFDEEDEDQGLLSLSWLGGS-ASDAEDSLALEVLEEILLDSAA-----------SPLTQALIES-GLGFADV 327 (978)
T ss_pred ccceeeccCCCCCCCceeEEEEEEecCC-cccHHHHHHHHHHHHHHccCcc-----------cHHHHHHHHc-CCCcccc
Confidence 11111 21 2346888889998886 3466788999999999999887 9999999875 444 444
Q ss_pred EEeecCCCCcceEEEEEE-eCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChH--HHHHHHHHH
Q 010516 371 SAFSNIYNHSGMFGIQGT-TGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRM--VVSEDIGRQ 447 (508)
Q Consensus 371 ~a~~~~~~~~g~~~i~~~-~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~--~~~~~~~~~ 447 (508)
+..+....-...|.+.++ ++.+..++.-+.+.+.|+++.. ++++.+.++.++.++.-++......+. ..+.+....
T Consensus 328 ~g~~~~~~~~~~f~v~~~gv~~ek~~~~k~lV~~~L~~l~~-~gi~~~~ie~~~~q~E~s~ke~~s~pfgl~l~~~~~~g 406 (978)
T COG1026 328 SGSYDSDLKETIFSVGLKGVSEEKIAKLKNLVLSTLKELVK-NGIDKKLIEAILHQLEFSLKEVKSYPFGLGLMFRSLYG 406 (978)
T ss_pred cceeccccceeEEEEEecCCCHHHHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHhhhhhcCCCccHHHHHHhccc
Confidence 433333334456666554 5577888888999999999999 679999999999998888877644443 345555566
Q ss_pred HHHcCCCCC---HHHHHHHHhcCCHHH--HHHHHHHHhc-CC-ceEEEEcCCC
Q 010516 448 VLTYGERKP---VEHFLKTVEGVTAKD--IASVAQKLLS-SP-LTMASYGDVI 493 (508)
Q Consensus 448 ~~~~g~~~~---~~~~~~~i~~vT~~D--i~~~a~~~l~-~~-~~~~~~G~~~ 493 (508)
++.++.+.+ ...+.+.|++--.++ ++++.++||- .+ .+++++-|..
T Consensus 407 w~~G~dp~~~Lr~~~~~~~Lr~~le~~~~fe~LI~ky~l~N~h~~~v~~~Ps~ 459 (978)
T COG1026 407 WLNGGDPEDSLRFLDYLQNLREKLEKGPYFEKLIRKYFLDNPHYVTVIVLPSP 459 (978)
T ss_pred cccCCChhhhhhhHHHHHHHHHhhhcChHHHHHHHHHhhcCCccEEEEEecCh
Confidence 665666554 234455554444444 9999999998 44 4555555443
No 14
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=99.89 E-value=2.9e-20 Score=196.09 Aligned_cols=399 Identities=19% Similarity=0.203 Sum_probs=272.9
Q ss_pred CCCCCCCCCceEEEEcCCCcEEEEeeCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHc
Q 010516 69 SLPDYVEPGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAI 147 (508)
Q Consensus 69 ~~~~~~~~~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~ 147 (508)
++|+..+... ....-.|..+|++.+.. +..++++++++.+..... ....+.-+...+...||.+++..++..+++.+
T Consensus 518 dvp~~~~k~~-l~~~~~~~~~v~~~~~~tn~i~yl~~~~~~~~l~~~-llpyL~L~~~~l~~lgt~~~~y~e~~~~i~~~ 595 (978)
T COG1026 518 DVPDPIEKTS-LETEVSNEAKVLHHDLFTNGITYLRLYFDLDMLPSE-LLPYLPLFAFALTNLGTETYSYKELLNQIERH 595 (978)
T ss_pred cCCCcccccc-eeeeccCCcceEEeecCCCCeEEEEEEeecCCCChh-hhhhHHHHHHHHHhcCCCCcCHHHHHHHHHHH
Confidence 3444444322 33444677888876655 569999999999666554 55666666666667899999999999999998
Q ss_pred CCeeEEeec-----------ceeEEEEEEcccCChHHHHHHHHHhhhCCCC-CHHHHHHHHHHHHHHHHhhc-CChHHHH
Q 010516 148 GGNVQASAS-----------REQMGYSFDALKTYVPEMVELLIDCVRNPVF-LDWEVNEQLTKVKSEISEVS-NNPQSLL 214 (508)
Q Consensus 148 g~~~~~~~~-----------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f-~~~~~~~~k~~~~~e~~~~~-~~p~~~~ 214 (508)
.|+++++.+ +..+++++.++.++.+++++++.+++.++.| |.++++...++.+..+.... +.+...+
T Consensus 596 TGgis~~~~~~~~~~~~~~~~~~~~i~~K~l~~k~~~~~~~i~~~l~~~~F~D~~Rlkell~q~~~~l~~~vr~sG~~~A 675 (978)
T COG1026 596 TGGISVSLSVDTDPGDDGEYRPSFSISGKALRSKVEKLFELIREILANTDFHDRERLKELLEQYLSDLTSSVRNSGHSIA 675 (978)
T ss_pred hCCceeeEeeccCCCccccccceEEEEEEehhhhhhHHHHHHHHHHhcCCcCcHHHHHHHHHHHHhhhHHhhhccchHHH
Confidence 665544432 3468999999999999999999999999999 77788888877777777744 4477777
Q ss_pred HHHHHHHhcCC-CCCCCCCC--ChHHhccCC-----------HHHHHHHHHhhcCCCCeEEEEcCCCHHHHHHHHHhhhc
Q 010516 215 LEAIHSAGYSG-ALANPLLA--PESAINRLN-----------STLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLS 280 (508)
Q Consensus 215 ~~~l~~~~~~~-~~~~~~~~--~~~~l~~l~-----------~~~l~~f~~~~~~~~~~~l~i~Gv~~e~l~~~~~~~~~ 280 (508)
.....+.++.. .+.....| ..+-|..|. .+.|++.+++++...|+.+++.| +.+.+...+++-|.
T Consensus 676 ~~~~~s~~~~~~~l~e~~~Gl~q~k~i~~l~~~~~~~~~~ei~~kL~~l~~~i~~~~n~~i~i~~-~~~~~~~~~e~~l~ 754 (978)
T COG1026 676 SSLANSRLSSAGALKELLNGLSQVKFLRELSSNFEENFEKEIADKLQALRKKIFQTNNLRIAIIG-DIDKILDLLENPLL 754 (978)
T ss_pred HHHhhcccccchhHHHHhcChhHHHHHHHHHHhhcccccHHHHHHHHHHHHHHhhcCceEEEEec-ChhhhHHHHHHHhh
Confidence 66666655543 33222212 123333332 24688889999999999888888 22233444444433
Q ss_pred CCCC-----CCCCCCCC-C--ccCC-CeeEeeCCCCceEEEEEeecCC-CCCCCcchHHHHHHHHhcCCCCCCCCCCCCC
Q 010516 281 DLPS-----IHPREEPK-S--VYTG-GDYRCQADSGLTHFVLAFELPG-GWHKDKDAMTLTVLQMLLGGGGSFSAGGPGK 350 (508)
Q Consensus 281 ~lp~-----~~~~~~~~-~--~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~ 350 (508)
++.. ...+..+. + ...+ .......+++..+.+++|.... .| +++|++++.|+..+|+.
T Consensus 755 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~p~a~~~l~fs~~~~~y-~hpd~~~l~vls~~L~~----------- 822 (978)
T COG1026 755 KFLEHLLPGFELPTPPKNPHLDLISSLSEATIIPSPVAYNALAFSIGGLPY-THPDYAALQVLSEYLGS----------- 822 (978)
T ss_pred hhhcccCcccccCCCCCCcchhhhccccceEEeccHHHHHHHhhhccCCCC-CCccchHHHHHHHHhcc-----------
Confidence 3321 11111111 1 1111 1111222334445555554321 24 78999999999999995
Q ss_pred CcccHHHHHHHhhCCCeEEEEEeecCCCCcceEEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHH
Q 010516 351 GMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAI 430 (508)
Q Consensus 351 g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~i~~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~ 430 (508)
..||..||++ |+|||+++..+ .+.|.|.++...+| +..+..+.+.+.++.+++ +.++++|+++++-.+++.+
T Consensus 823 ---~~lw~~IR~~-GGAYGa~as~~--~~~G~f~f~sYRDP-n~~kt~~v~~~~v~~l~s-~~~~~~d~~~~ilg~i~~~ 894 (978)
T COG1026 823 ---GYLWNKIREK-GGAYGASASID--ANRGVFSFASYRDP-NILKTYKVFRKSVKDLAS-GNFDERDLEEAILGIISTL 894 (978)
T ss_pred ---chhHHHHHhh-ccccccccccc--cCCCeEEEEecCCC-cHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHhhccc
Confidence 7999999988 55999888765 45677887777777 456788999999999999 7899999999999999888
Q ss_pred HHhccChHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCHHHHHHHHHHHhc---CCceEEEEcC
Q 010516 431 LMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLS---SPLTMASYGD 491 (508)
Q Consensus 431 ~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vT~~Di~~~a~~~l~---~~~~~~~~G~ 491 (508)
.+.. ++......-....+.+-.+...+.++++|.++|++||++++++|+. +.-+++++|.
T Consensus 895 d~p~-sp~~~~~~s~~~~~sg~~~~~~qa~re~~l~vt~~di~~~~~~yl~~~~~e~~i~~~~~ 957 (978)
T COG1026 895 DTPE-SPASEGSKSFYRDLSGLTDEERQAFRERLLDVTKEDIKEVMDKYLLNFSSENSIAVFAG 957 (978)
T ss_pred cccc-CCcceehhhHHHHHhcCCHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccccceEEEEec
Confidence 6654 5544443333333323333447889999999999999999999987 5666777775
No 15
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=99.88 E-value=1.2e-21 Score=171.69 Aligned_cols=146 Identities=38% Similarity=0.582 Sum_probs=138.7
Q ss_pred EEEEeeC-CCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeEEeecceeEEEEEEcc
Q 010516 89 KIASETS-VSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDAL 167 (508)
Q Consensus 89 ~v~~~~~-~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~ 167 (508)
||++..+ ..+.+.+.+++++|+.+|++...|++||++||+++|+.+++..++.+.++..|+.++++++++++.|.++++
T Consensus 1 ~V~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~a~ll~~l~~~gs~~~~~~~l~~~l~~~G~~~~~~t~~d~t~~~~~~~ 80 (149)
T PF00675_consen 1 KVVLVEDPGSPVVSVSLVFKAGSRYEPPGKPGLAHLLEHLLFRGSKKYSSDELQEELESLGASFNASTSRDSTSYSASVL 80 (149)
T ss_dssp EEEEEESTTSSEEEEEEEES-SGGGSCTTTTTHHHHHHHHTTSBBSSSBHHHHHHHHHHTTCEEEEEEESSEEEEEEEEE
T ss_pred CEEEEEcCCCCEEEEEEEEeeccCCCCCCCCchhhhhhhhcccccchhhhhhhHHHhhhhccccceEecccceEEEEEEe
Confidence 6887666 578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCCCCCCCC
Q 010516 168 KTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAP 234 (508)
Q Consensus 168 ~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~ 234 (508)
+++++.+|+++.+++.+|.|++++|+++|..+..+++....+|...+.+.+++.+|.+ ||++++.|+
T Consensus 81 ~~~~~~~l~~l~~~~~~P~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~~p~~~~~~~~ 148 (149)
T PF00675_consen 81 SEDLEKALELLADMLFNPSFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFRGHPYGNPLLGP 148 (149)
T ss_dssp GGGHHHHHHHHHHHHHSBGGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSGGGSHSS-T
T ss_pred cccchhHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhccCCCCCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999987 999998876
No 16
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=99.87 E-value=2.9e-21 Score=174.92 Aligned_cols=174 Identities=26% Similarity=0.369 Sum_probs=145.1
Q ss_pred cCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCCCCC---CCCC-CC--C--ccCCCeeE-eeCCCCce
Q 010516 240 RLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIH---PREE-PK--S--VYTGGDYR-CQADSGLT 309 (508)
Q Consensus 240 ~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp~~~---~~~~-~~--~--~~~~~~~~-~~~~~~~~ 309 (508)
+||.++|++||++||+|+||+++++| ++++++.++++++|+.||... .... .. + ...+.... ...+.+..
T Consensus 1 ~it~e~l~~f~~~~y~p~n~~l~i~Gd~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (184)
T PF05193_consen 1 NITLEDLRAFYKKFYRPSNMTLVIVGDIDPDELEKLIEKYFGSLPKSSIPPKPKPRSPPLPPSEPQGKEIVIPSKDESQS 80 (184)
T ss_dssp C--HHHHHHHHHHHSSGGGEEEEEEESSGHHHHHHHHHHHHTTSSHSCHGGSSSCSSSSSSCGGSSEEEEEEEESSSSSE
T ss_pred CCCHHHHHHHHHHhcCccceEEEEEcCccHHHHHHHHHhhhhhhcccccccccccccccccccccccccccccccccccc
Confidence 47899999999999999999999999 999999999999999998654 2211 11 1 12222333 33444899
Q ss_pred EEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcceEEEEEEe
Q 010516 310 HFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTT 389 (508)
Q Consensus 310 ~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~i~~~~ 389 (508)
.+.++|+.+.. .+.++..++.++..+|+++ ++++|+..||++.+++|+++++...+.+.+.|++++++
T Consensus 81 ~v~~~~~~~~~-~~~~~~~~~~~l~~~l~~~-----------~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~~~i~~~~ 148 (184)
T PF05193_consen 81 IVSIAFPGPPI-KDSKDYFALNLLSSLLGNG-----------MSSRLFQELREKQGLAYSVSASNSSYRDSGLFSISFQV 148 (184)
T ss_dssp EEEEEEEEEET-GTSTTHHHHHHHHHHHHCS-----------TTSHHHHHHHTTTTSESEEEEEEEEESSEEEEEEEEEE
T ss_pred ccccccccccc-cccchhhHHHHHHHHHhcC-----------ccchhHHHHHhccccceEEEeeeeccccceEEEEEEEc
Confidence 99999999872 2778999999999999986 55999999999999999999998777789999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHH
Q 010516 390 GSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQST 426 (508)
Q Consensus 390 ~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~ 426 (508)
.|++..++++.+.++++++.. ++++++||+++|+++
T Consensus 149 ~~~~~~~~~~~~~~~l~~l~~-~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 149 TPENLDEAIEAILQELKRLRE-GGISEEELERAKNQL 184 (184)
T ss_dssp EGGGHHHHHHHHHHHHHHHHH-HCS-HHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHhcC
Confidence 999999999999999999999 679999999999875
No 17
>PTZ00432 falcilysin; Provisional
Probab=99.87 E-value=1.4e-19 Score=203.44 Aligned_cols=387 Identities=14% Similarity=0.081 Sum_probs=268.7
Q ss_pred EcCCCcEEEEeeCCCC-eEEEEEEEcccccCCCCCCCcHHHHHHHh-hccCCCCCChHHHHHHHHHcCCeeEEe----ec
Q 010516 83 TLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERM-AFRSTRNRSHLRIVREVEAIGGNVQAS----AS 156 (508)
Q Consensus 83 ~L~NGl~v~~~~~~~~-~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l-~~~gt~~~s~~~l~~~l~~~g~~~~~~----~~ 156 (508)
...+|++|+..+.+++ .+++.++++.....+. ......|+..+ ...||.++++.++...++...|+++++ ++
T Consensus 664 ~~~~~~~~~~~~~~TnGi~y~~~~fdl~~l~~e--~~~yl~L~~~~l~~~gT~~~s~~el~~~i~~~tGg~~~~~~~~~~ 741 (1119)
T PTZ00432 664 SDGGSVTVLVHPIESRGILYLDFAFSLDSLTVD--ELKYLNLFKALLKENGTDKLSSEEFTYKREKNLGGLSASTAFYSE 741 (1119)
T ss_pred ccCCCcceEEEecCCCCeEEEEEEecCCCCCHH--HHhhHHHHHHHHHhcCCCCCCHHHHHHHHHHhCCCeEEEEEEecc
Confidence 3468999998777765 9999999999987653 34444555555 446999999999999999987766654 22
Q ss_pred ------------ceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHH-HHHHHHHHHHHHHhhc-CChHHHHHHHHHHHh
Q 010516 157 ------------REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWE-VNEQLTKVKSEISEVS-NNPQSLLLEAIHSAG 222 (508)
Q Consensus 157 ------------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~-~~~~k~~~~~e~~~~~-~~p~~~~~~~l~~~~ 222 (508)
...+.+++.++.++++++++++.+++.++.|++.+ +....++.+..+.+.. ++....+...+.+..
T Consensus 742 ~~~~~~~~~~~~~~~~~v~~k~l~~~~~~~~~l~~eil~~~~f~d~~rl~~il~~~~~~~~~~~~~~Gh~~A~~~~~s~~ 821 (1119)
T PTZ00432 742 TNNLTYDDPYNGVGYLNVRAKVLKHKVNEMVDIVLEALKDADFSNSKKGVEILKRKINGMKTVFSSKGHKFALKRMKSKF 821 (1119)
T ss_pred ccccccCcccccceEEEEEEEEhhhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhcC
Confidence 33689999999999999999999999999998755 7777777777777643 355555554443322
Q ss_pred cCC-CCCCCCCC--ChHHhccCC-----------HHHHHHHHHhhcCCCCeEEEEcC-C-CHHHHHHHHHhhhcCCCCC-
Q 010516 223 YSG-ALANPLLA--PESAINRLN-----------STLLEEFVAENYTGPRMVLAASG-V-EHDQLVSVAEPLLSDLPSI- 285 (508)
Q Consensus 223 ~~~-~~~~~~~~--~~~~l~~l~-----------~~~l~~f~~~~~~~~~~~l~i~G-v-~~e~l~~~~~~~~~~lp~~- 285 (508)
... .+.....| ...-|+.+. .+.|.+++++.|+.+++.+.++| . ..+.+.+.+..++..++..
T Consensus 822 S~~~~~~e~~~G~~~~~fl~~l~~~~~e~~~~~v~~~L~~i~~~i~~~~~l~~~vt~~~~~~~~~~~~~~~~~~~l~~~~ 901 (1119)
T PTZ00432 822 SVSDYADELVNGYSQLLFLKETLVPLAEKDWSKVESKLNEIRNKLLSMKNLTVNVTGDSELLDSLLDDSTTFLKKLSSTF 901 (1119)
T ss_pred CHHHHHHHHhcCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCcCCcEEEEEeCHHHHHHHHHHHHHHHHhccccc
Confidence 211 11111111 112222211 34578889999999999999999 5 4566667666677766421
Q ss_pred ---C--CC-CCCCC-c-----cCC--CeeEeeCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCC
Q 010516 286 ---H--PR-EEPKS-V-----YTG--GDYRCQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKG 351 (508)
Q Consensus 286 ---~--~~-~~~~~-~-----~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g 351 (508)
. .. ..... . +.. ....+..+....+++.+..... ..+++..++.|+.++|+.
T Consensus 902 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~V~yv~~~~~~~~--~~~~~~~~l~Vl~~~L~~------------ 967 (1119)
T PTZ00432 902 KENDNKSSDKVWVKEVLDKKLMESVDKNEFIVLPTRVNFVGMGGKLFD--KSDKVDGSFQVIVHYLKN------------ 967 (1119)
T ss_pred ccccccccccccccccccccccCCcccceEEEccCceeEEEEeccccc--CCCccCHHHHHHHHHHcc------------
Confidence 1 01 00000 0 111 1112334456667777644333 356779999999999995
Q ss_pred cccHHHHHHHhhCCCeEEEEEeecCCCCcceEEEEEEeCcchHHHHHHHHHHHHHHhhCCC--CCCHHHHHHHHHHHHHH
Q 010516 352 MYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPG--EVDQVQLDRAKQSTKSA 429 (508)
Q Consensus 352 ~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~i~~~~~p~~~~~~~~~~~~~l~~l~~~~--~i~~~el~~ak~~~~~~ 429 (508)
+.||..||++.| +||+++... ..|.|.++...+| ++.+.++.+.+....+.+ + .+|+++++++|.++++.
T Consensus 968 --~yLw~~IR~~GG-AYG~~~~~~---~~G~~~f~SYRDP-n~~~Tl~~f~~~~~~l~~-~~~~~~~~~l~~~iig~~~~ 1039 (1119)
T PTZ00432 968 --SYLWKTVRMSLG-AYGVFADLL---YTGHVIFMSYADP-NFEKTLEVYKEVASALRE-AAETLTDKDLLRYKIGKISN 1039 (1119)
T ss_pred --ccchHHHcccCC-ccccCCccC---CCCeEEEEEecCC-CHHHHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHhc
Confidence 799999998855 999986543 3488888777777 556788888777777765 3 39999999999999999
Q ss_pred HHHhccChHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCCHHHHHHHHHHHhc--CCceEEEEcCCCCC
Q 010516 430 ILMNLESRMVVSEDIGRQVLTYGER-KPVEHFLKTVEGVTAKDIASVAQKLLS--SPLTMASYGDVINV 495 (508)
Q Consensus 430 ~~~~~~s~~~~~~~~~~~~~~~g~~-~~~~~~~~~i~~vT~~Di~~~a~~~l~--~~~~~~~~G~~~~~ 495 (508)
+.... ++..........++ .|.. ..++++++.|-++|++||+++|+++.. +...++++|+...+
T Consensus 1040 ~D~p~-~p~~~g~~~~~~~l-~g~t~e~rq~~R~~il~~t~edi~~~a~~~~~~~~~~~~~v~g~~~~~ 1106 (1119)
T PTZ00432 1040 IDKPL-HVDELSKLALLRII-RNESDEDRQKFRKDILETTKEDFYRLADLMEKSKEWEKVIAVVNSKTS 1106 (1119)
T ss_pred cCCCC-ChHHHHHHHHHHHH-cCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCeEEEEECHHHh
Confidence 97755 55555544444454 4544 457899999999999999999999998 55678889986544
No 18
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=7.3e-18 Score=168.84 Aligned_cols=383 Identities=15% Similarity=0.168 Sum_probs=273.9
Q ss_pred CCCcEEEEeeCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHc-CCeeEEeecceeEEEE
Q 010516 85 PNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAI-GGNVQASASREQMGYS 163 (508)
Q Consensus 85 ~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~-g~~~~~~~~~~~~~~~ 163 (508)
.-|++|++-..+++.+ +.+|-... |...+.|+.|-+|||.|+|.++|+...+...+... -++.|+.|+.+++.|+
T Consensus 27 ~Tkl~va~~~~pts~v--hG~f~v~T--Ea~~d~G~PHTLEHL~FMGSKkYP~kGvLd~~anr~l~dtNAwTDtD~T~Yt 102 (1022)
T KOG0961|consen 27 NTKLRVAIGEVPTSMV--HGAFSVVT--EADSDDGLPHTLEHLVFMGSKKYPFKGVLDVIANRCLADTNAWTDTDHTAYT 102 (1022)
T ss_pred ccceEEEEeecCCcce--eeeEEeee--eecCCCCCchhHHHHhhhccccCCcccHHHHhhcchhcccccccccCcceEE
Confidence 3578898877776643 44433332 22356899999999999999999998887766554 3579999999999999
Q ss_pred EEcc-cCChHHHHHHHHHhhhCCCCCHHHHHHH----------HHHHHHHHHhhcCChHHHHHHHHHHHhcC-C-CCCCC
Q 010516 164 FDAL-KTYVPEMVELLIDCVRNPVFLDWEVNEQ----------LTKVKSEISEVSNNPQSLLLEAIHSAGYS-G-ALANP 230 (508)
Q Consensus 164 ~~~~-~~~l~~~l~ll~~~~~~p~f~~~~~~~~----------k~~~~~e~~~~~~~p~~~~~~~l~~~~~~-~-~~~~~ 230 (508)
+++. .+.+-++|....+.+..|.+++++|-.+ +..+..|+++....-.....+.....+|+ . +|...
T Consensus 103 LStag~dGFlklLPvy~dHiL~P~Ltdeaf~TEVyHI~geg~d~GVVySEMq~~es~~~~im~~~~~~~~yP~~sgY~~e 182 (1022)
T KOG0961|consen 103 LSTAGSDGFLKLLPVYIDHILTPMLTDEAFATEVYHITGEGNDAGVVYSEMQDHESEMESIMDRKTKEVIYPPFSGYAVE 182 (1022)
T ss_pred eecccccchHHHhHHHHHhhcCcccchhhhhhheeeecCCCCccceeehhhhhhhcccchhhhhhhheeecCCCCCceec
Confidence 9886 4779999999999999999999999876 46677888887777777888888889995 4 88888
Q ss_pred CCCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCCCCCCCCC---CCC------cc--CCC
Q 010516 231 LLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE---PKS------VY--TGG 298 (508)
Q Consensus 231 ~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp~~~~~~~---~~~------~~--~~~ 298 (508)
..|..+.|+.+|.+.+++|++++|.++||++.++| |++++++...+..-..++......+ +.| .+ ...
T Consensus 183 TGG~~knLR~lt~ekIR~yHK~~Y~~sN~cviVcG~v~~d~lL~~m~~~~neile~~s~vP~~~~rPf~~tn~~~~i~e~ 262 (1022)
T KOG0961|consen 183 TGGRLKNLRELTLEKIRDYHKKFYHLSNMCVIVCGMVDHDQLLEIMNNVENEILEHMSTVPDHFPRPFSFTNALSDIKES 262 (1022)
T ss_pred cCCChhhHHHhhHHHHHHHHHHhccccceEEEEecCcCHHHHHHHHHHHHhhhhhccccCCCCCCCCcccccCcccCCcc
Confidence 78889999999999999999999999999999999 9999999988776554443221111 111 11 111
Q ss_pred -eeEe--e-CCCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHh-hCCCeEEEEEe
Q 010516 299 -DYRC--Q-ADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLN-EFPQVQSFSAF 373 (508)
Q Consensus 299 -~~~~--~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~-~~~~~Y~v~a~ 373 (508)
..++ . .+..+..+.++|-++. ..+.....++.+|..+|+...- +++-+.+-+ +-.++-+++..
T Consensus 263 t~~tVefp~~Des~G~v~~aW~g~s-~sD~~t~~a~~vL~dyls~sav-----------apf~~~fVeieDP~assv~f~ 330 (1022)
T KOG0961|consen 263 TVHTVEFPTDDESRGAVEVAWFGHS-PSDLETHSALHVLFDYLSNSAV-----------APFQKDFVEIEDPLASSVSFH 330 (1022)
T ss_pred ceeeeecCCcccccceEEEEEcCCC-HHHhhhHHHHHHHHHHhccccc-----------cccccceEEecCccccceeee
Confidence 1112 2 3446788899998876 3455677899999999987543 555555433 33455555544
Q ss_pred ecCCCCcceEEEEEE-eCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHH--HHHHHHHHHHH
Q 010516 374 SNIYNHSGMFGIQGT-TGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMV--VSEDIGRQVLT 450 (508)
Q Consensus 374 ~~~~~~~g~~~i~~~-~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~--~~~~~~~~~~~ 450 (508)
.. +.-...+.+.++ .+-+++.+....+++.+.+-++ ++-+-+.....+.+-+++.+++.+.. .+..+....+
T Consensus 331 ~~-~~vrc~i~L~f~gVP~EKi~~~~~k~l~~l~et~~---iDm~Rm~~~i~~t~~~yL~nlE~n~~s~fms~ii~d~~- 405 (1022)
T KOG0961|consen 331 IA-EGVRCDIRLNFAGVPVEKIDECAPKFLDKLVETAN---IDMERMGYLIDQTILNYLVNLETNAPSDFMSHIIGDQL- 405 (1022)
T ss_pred ee-cccceeEEEeecCCcHHHhhhhhHHHHHHHHHhcc---cCHHHHHHHHHHHHHHHHHhhhcCChHHHHHHHhhhhh-
Confidence 43 222334555554 4456777777777776655444 77777777777778888888876542 3444444443
Q ss_pred cCCCC--C------HHHHHHHHhcCCHHHHHHHHHHHhc-CCceEEE
Q 010516 451 YGERK--P------VEHFLKTVEGVTAKDIASVAQKLLS-SPLTMAS 488 (508)
Q Consensus 451 ~g~~~--~------~~~~~~~i~~vT~~Di~~~a~~~l~-~~~~~~~ 488 (508)
+|... . .-++.+.+.+-..+|.+++.+||+. .+.++++
T Consensus 406 ygnedg~~l~~~lk~l~~~~~L~~w~~kdW~~Llnk~Fven~s~tVi 452 (1022)
T KOG0961|consen 406 YGNEDGELLKKRLKELDFLKKLKSWPAKDWVQLLNKYFVENPSATVI 452 (1022)
T ss_pred ccCcchhHHHHHHHhHHHHHHHhhccHHHHHHHHHHHhccCCCeEEE
Confidence 44432 1 1246778999999999999999999 4444444
No 19
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=4.3e-17 Score=163.64 Aligned_cols=382 Identities=17% Similarity=0.111 Sum_probs=263.2
Q ss_pred EEcCCCcEEEEeeCCC-CeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeEEee--cc-
Q 010516 82 STLPNGVKIASETSVS-PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASA--SR- 157 (508)
Q Consensus 82 ~~L~NGl~v~~~~~~~-~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~--~~- 157 (508)
...-||++|...+... ..+++++.+..++..+. --..+.-+|+.++..||+..+..++.+.+..+.|.++++. ..
T Consensus 564 v~dingvkv~~~dl~tngi~Y~r~~~~l~~~p~e-L~PylPlfc~sll~lGt~~lsf~el~qqI~rkTGGiS~~p~~~s~ 642 (998)
T KOG2019|consen 564 VGDINGVKVQRCDLFTNGITYTRVVFDLNSLPEE-LLPYLPLFCQSLLNLGTGDLSFVELEQQIGRKTGGISVSPLVSSD 642 (998)
T ss_pred eeeccCceeEEeeccCCceEEEEEeeccccCcHH-hhcchHHHHHHHHhcCCCcccHHHHHHHhhhhcCceeecceeccC
Confidence 3446899999887775 49999999999998776 5678888999999999999999999999999877665553 21
Q ss_pred -------eeEEEEEEcccCChHHHHHHHHHhhhCCCCCH-HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcC-C-CC
Q 010516 158 -------EQMGYSFDALKTYVPEMVELLIDCVRNPVFLD-WEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYS-G-AL 227 (508)
Q Consensus 158 -------~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~-~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~-~-~~ 227 (508)
-.+.++..++..+.+.+++++..++.++.|.+ +.|+.......+++.+.-.+....+...-..+.+. . ..
T Consensus 643 ~~~d~p~~~i~~~~~~l~rn~~dlfel~n~il~e~~f~n~dkfkvlvk~s~s~~~n~i~dsGH~~A~~rs~a~l~~ag~i 722 (998)
T KOG2019|consen 643 DGMDEPELGIVFSGSMLDRNADDLFELWNKILQETCFTNQDKFKVLVKQSASRMTNGIADSGHGFAAARSAAMLTPAGWI 722 (998)
T ss_pred CCCCccceeEEechhhhcCChhHHHHHHHHHhcccCcccHHHHHHHHHHHHHHhhccCCcccchhHhhhhhcccCcccch
Confidence 24778888888999999999999999999975 56777777777777764444333333333333332 1 11
Q ss_pred CCCCCCChHH---hccC---C-------HHHHHHHHHhhcCCCCeEEEEcC--CCHHHHHHHHHhhhcCCCC-CCCCCC-
Q 010516 228 ANPLLAPESA---INRL---N-------STLLEEFVAENYTGPRMVLAASG--VEHDQLVSVAEPLLSDLPS-IHPREE- 290 (508)
Q Consensus 228 ~~~~~~~~~~---l~~l---~-------~~~l~~f~~~~~~~~~~~l~i~G--v~~e~l~~~~~~~~~~lp~-~~~~~~- 290 (508)
...+ +-.+. +.+| . .+.|.++.+-+...++|.+.|.. ..+..+.+.+++++..+|. .+....
T Consensus 723 ~Eql-gGl~ql~fl~~L~~~~d~d~~~i~~kL~eIrk~ll~~ng~~~~itAd~~q~~~vEkav~kFl~~lp~e~p~g~~s 801 (998)
T KOG2019|consen 723 SEQL-GGLSQLEFLHRLEEKVDNDWEPIVSKLTEIRKSLLNTNGMIVNITADPKQLTNVEKAVEKFLDSLPRENPSGSKS 801 (998)
T ss_pred HhHh-cchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCeEEEEecCcccchhHHHHHHHHHHhccccCCCCCcc
Confidence 1111 11111 1111 1 24566666667788999999987 8999999999999998884 222221
Q ss_pred -CCCccC--CCeeEeeCC-CCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCC
Q 010516 291 -PKSVYT--GGDYRCQAD-SGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQ 366 (508)
Q Consensus 291 -~~~~~~--~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~ 366 (508)
+.+..+ ...+++.-+ -+..++.-+..+-+ .++++-..+.|++.+|.. ..||.+||++.|
T Consensus 802 t~d~r~p~~~~~i~~~~P~fqvnyvgka~~~vp--yt~~d~asl~vlS~~lt~--------------k~Lh~evRekGG- 864 (998)
T KOG2019|consen 802 TWDARLPLRSEAIRVVIPTFQVNYVGKAGLGVP--YTHPDGASLQVLSKLLTN--------------KWLHDEVREKGG- 864 (998)
T ss_pred CccccCCCCceeEEEeccccchhhhhhhccccc--CCCCCCcHHHHHHHHHHH--------------HHHHHHHHHhcC-
Confidence 112111 112222222 22333333333333 477999999999999985 899999999855
Q ss_pred eEEEEEeecCCCCcceEEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHH
Q 010516 367 VQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGR 446 (508)
Q Consensus 367 ~Y~v~a~~~~~~~~g~~~i~~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~ 446 (508)
+|+.++.++. ..|.|.+|...+|. ..+.++.+...-.-++. ..+++++|+.||-.+++...... .+.... +.+
T Consensus 865 AYGgg~s~~s--h~GvfSf~SYRDpn-~lktL~~f~~tgd~~~~-~~~~~~dldeAkl~~f~~VDap~-~P~~kG--~~~ 937 (998)
T KOG2019|consen 865 AYGGGCSYSS--HSGVFSFYSYRDPN-PLKTLDIFDGTGDFLRG-LDVDQQDLDEAKLGTFGDVDAPQ-LPDAKG--LLR 937 (998)
T ss_pred ccCCcccccc--ccceEEEEeccCCc-hhhHHHhhcchhhhhhc-CCccccchhhhhhhhcccccCCc-CCcccc--hHH
Confidence 9998877664 46788888777774 45677777776666666 66999999999999998875543 232222 333
Q ss_pred HHHHcCCCC-CHHHHHHHHhcCCHHHHHHHHHHHhc-CC--ceEEEEcC
Q 010516 447 QVLTYGERK-PVEHFLKTVEGVTAKDIASVAQKLLS-SP--LTMASYGD 491 (508)
Q Consensus 447 ~~~~~g~~~-~~~~~~~~i~~vT~~Di~~~a~~~l~-~~--~~~~~~G~ 491 (508)
.+ +|... ..+...+.|-+++.+|+.++|++|+. .. ..+++.|+
T Consensus 938 fl--~gvtDemkQarREqll~vSl~d~~~vae~yl~~~~~~~~vav~g~ 984 (998)
T KOG2019|consen 938 FL--LGVTDEMKQARREQLLAVSLKDFKAVAEAYLGVGDKGVAVAVAGP 984 (998)
T ss_pred HH--hcCCHHHHHHHHHHHHhhhHHHHHHHHHHHhccCCcceEEEeeCc
Confidence 23 45544 35777889999999999999999998 33 34555554
No 20
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=5.7e-17 Score=162.77 Aligned_cols=396 Identities=13% Similarity=0.097 Sum_probs=286.6
Q ss_pred EEEEcCCCcEEEEeeCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHH-HHHHHHHc-CCeeEEeecc
Q 010516 80 KISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLR-IVREVEAI-GGNVQASASR 157 (508)
Q Consensus 80 ~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~-l~~~l~~~-g~~~~~~~~~ 157 (508)
....-.-|.++.+.+.+.+--.+++.|+... +...|+.|++||-...|+.+|+-.+ +.+.|.+- .--+|++|..
T Consensus 55 ~lkH~~Tgae~lhl~reD~N~vFsI~FrTpp----~dstGiPHILEHtvLCGS~KYPvrdPFfkmLnrSLatFmNAfT~p 130 (998)
T KOG2019|consen 55 LLKHKKTGAEVLHLDREDENNVFSIVFRTPP----KDSTGIPHILEHTVLCGSRKYPVRDPFFKMLNRSLATFMNAFTAP 130 (998)
T ss_pred eeeecCCCceeEeeccCCCCceeEEEeecCC----CccCCCchhhhhheeeccCcCcccChHHHHHHHHHHHHHhhccCC
Confidence 3333457999998766644344556666553 4567999999999999999887533 44444332 2247999999
Q ss_pred eeEEEEEEccc-CChHHHHHHHHHhhhCCCCCHHHHHHH------------------HHHHHHHHHhhcCChHHHHHHHH
Q 010516 158 EQMGYSFDALK-TYVPEMVELLIDCVRNPVFLDWEVNEQ------------------LTKVKSEISEVSNNPQSLLLEAI 218 (508)
Q Consensus 158 ~~~~~~~~~~~-~~l~~~l~ll~~~~~~p~f~~~~~~~~------------------k~~~~~e~~~~~~~p~~~~~~~l 218 (508)
+++.|-+.+.+ +++..+.++..|....|..-+..|.++ |..+-.|++..-.+|...+...+
T Consensus 131 D~T~yPfattN~kDf~NL~dVYLDAtffPklr~~dF~QEGWr~Eh~dpsd~~SpivfkGVVfNEMKG~~S~~~~if~~~~ 210 (998)
T KOG2019|consen 131 DYTFYPFATTNTKDFYNLRDVYLDATFFPKLRKLDFQQEGWRLEHNDPSDPISPIVFKGVVFNEMKGQYSDPDYIFGMLF 210 (998)
T ss_pred CcceeecccCChHHHHHHHHHhhhcccchHHHhhhhhhhcceeecCCCCCCcccceeeeeeeecccccccChhHHHHHHH
Confidence 99999988765 689999999999999999777777764 56777888888899999999999
Q ss_pred HHHhcCC-CCCCCCCCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCCCCCCCCCCCC--c
Q 010516 219 HSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPKS--V 294 (508)
Q Consensus 219 ~~~~~~~-~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp~~~~~~~~~~--~ 294 (508)
.+.++++ .|+....|.+..|..|+.+++.+|++++|+|+|..++.+| +..+...++++.-|....+......... .
T Consensus 211 Qq~L~p~~tYgv~SGGDPl~IpdLt~eelk~FHr~~YHPSNAri~tYGn~Pl~~~l~~l~e~~~~~sk~~~s~kv~~qk~ 290 (998)
T KOG2019|consen 211 QQALFPENTYGVNSGGDPLDIPDLTYEELKEFHRQHYHPSNARIFTYGNFPLEDLLKQLEEDFSPFSKRELSSKVTFQKL 290 (998)
T ss_pred HHhhCccccccccCCCCcccCccccHHHHHHHHHhccCCCcceeEeecCchHHHHHHHHHHhhcccccccccCccccccc
Confidence 9999987 9998888999999999999999999999999999999999 9999999999987766644433322111 1
Q ss_pred cC-CCeeE-------eeCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCC
Q 010516 295 YT-GGDYR-------CQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQ 366 (508)
Q Consensus 295 ~~-~~~~~-------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~ 366 (508)
+. ...+. ......++.+.+.|..+.. .+..+..++.+|..||-+|.| |++|+.|-|. |+
T Consensus 291 f~kp~rvve~~p~d~~~~p~Kq~~~s~s~L~~~p-~d~~etfaL~~L~~Ll~~gps-----------Sp~yk~LiES-GL 357 (998)
T KOG2019|consen 291 FDKPRRVVEKGPADPGDLPKKQTKCSNSFLSNDP-LDTYETFALKVLSHLLLDGPS-----------SPFYKALIES-GL 357 (998)
T ss_pred cccCceeeeecCCCCCCCccceeEEEEEeecCCc-hhHHHHHHHHHHHHHhcCCCc-----------cHHHHHHHHc-CC
Confidence 11 11111 1122356677777766542 355778999999999998866 9999998875 44
Q ss_pred e--EEEEEeecCCCCcceEEEEEEeC-cchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChH-HHHH
Q 010516 367 V--QSFSAFSNIYNHSGMFGIQGTTG-SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRM-VVSE 442 (508)
Q Consensus 367 ~--Y~v~a~~~~~~~~g~~~i~~~~~-p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~-~~~~ 442 (508)
+ .++.+.+....-.+.|++-.+.- .++++++.+.+...+.+++. .+++.+.++....++.-++..+-.... ..+.
T Consensus 358 GtEfsvnsG~~~~t~~~~fsVGLqGvseediekve~lV~~t~~~lae-~gfd~drieAil~qiEislk~qst~fGL~L~~ 436 (998)
T KOG2019|consen 358 GTEFSVNSGYEDTTLQPQFSVGLQGVSEEDIEKVEELVMNTFNKLAE-TGFDNDRIEAILHQIEISLKHQSTGFGLSLMQ 436 (998)
T ss_pred CcccccCCCCCcccccceeeeeeccccHHHHHHHHHHHHHHHHHHHH-hccchHHHHHHHHHhhhhhhccccchhHHHHH
Confidence 4 56666666555667888877654 56778888899999999998 679999999988887666655443322 3445
Q ss_pred HHHHHHHHcCCCCCHH-------HHHHHHhcCCHHHHHHHHHHHhc-CC--ceEEEEcCCC
Q 010516 443 DIGRQVLTYGERKPVE-------HFLKTVEGVTAKDIASVAQKLLS-SP--LTMASYGDVI 493 (508)
Q Consensus 443 ~~~~~~~~~g~~~~~~-------~~~~~i~~vT~~Di~~~a~~~l~-~~--~~~~~~G~~~ 493 (508)
.+...|.+...+.... .+...+..-...=++...++|+. .+ +++.+.++.+
T Consensus 437 ~i~~~W~~d~DPfE~Lk~~~~L~~lk~~l~ek~~~lfq~lIkkYilnn~h~~t~smqpd~e 497 (998)
T KOG2019|consen 437 SIISKWINDMDPFEPLKFEEQLKKLKQRLAEKSKKLFQPLIKKYILNNPHCFTFSMQPDPE 497 (998)
T ss_pred HHhhhhccCCCccchhhhhhHHHHHHHHHhhhchhHHHHHHHHHHhcCCceEEEEecCCch
Confidence 5555565555555322 23334444456668889999998 33 4455555543
No 21
>KOG0961 consensus Predicted Zn2+-dependent endopeptidase, insulinase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.2e-11 Score=124.82 Aligned_cols=365 Identities=13% Similarity=0.135 Sum_probs=232.2
Q ss_pred CCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhc------cCCCCC----ChHHHHHHHHHcCCeeEEe-----ecceeE
Q 010516 96 VSPVASISLYVGCGSIYESPISFGTTHLLERMAF------RSTRNR----SHLRIVREVEAIGGNVQAS-----ASREQM 160 (508)
Q Consensus 96 ~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~------~gt~~~----s~~~l~~~l~~~g~~~~~~-----~~~~~~ 160 (508)
++..+.+..+++.....- .....-.++..+++ .|+-+- +..++.+.+....++.+.. +-++-+
T Consensus 559 ps~Fvel~fl~dss~i~~--sl~pYl~~f~~l~~~~pa~ldgtiptp~~~s~~~v~~~~~s~~id~si~~g~~G~~~~lv 636 (1022)
T KOG0961|consen 559 PSKFVELFFLLDSSNISI--SLRPYLFLFTDLLFESPAMLDGTIPTPVLTSADDVAKHFTSDLIDHSIQVGVSGLYDRLV 636 (1022)
T ss_pred chHHHhHhhhhccccCch--hhhhHHHHHHHHHhcCHHHhcCCCCcchhhhHHHHHHHHHhhhhhhhhcccccccchhhe
Confidence 344666666666665552 23333344444443 465443 3455555554433322222 235678
Q ss_pred EEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCCCC--CCCChHH
Q 010516 161 GYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANP--LLAPESA 237 (508)
Q Consensus 161 ~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~--~~~~~~~ 237 (508)
.+.+.+-.++.+..++++..++....||++++....+++..++..++.|....+..+....+|+. .+... .+..++-
T Consensus 637 n~~Ikv~a~~Y~~~v~Wi~~~l~~~VfD~~Ri~~~~~~~l~~i~~~KRdg~~vlss~~~~~lY~~~slk~s~d~L~~Ek~ 716 (1022)
T KOG0961|consen 637 NLRIKVGADKYPLLVKWIQIFLQGVVFDPSRIHQCAQKLLGEIRDRKRDGCTVLSSAVASMLYGKNSLKISFDELVLEKL 716 (1022)
T ss_pred eEEEEEccCCcchhHHHHHHHhhhhccCHHHHHHHHHHHHhhhhhhhcCccEehHHHHHHHHhcccchhhcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999965 43332 1222233
Q ss_pred hccCCH----------HHHHHHHHhhcCCCCeEEEEcC-CCH-HHHHHHHHhhhcCCCCCCCCCCC---------CCccC
Q 010516 238 INRLNS----------TLLEEFVAENYTGPRMVLAASG-VEH-DQLVSVAEPLLSDLPSIHPREEP---------KSVYT 296 (508)
Q Consensus 238 l~~l~~----------~~l~~f~~~~~~~~~~~l~i~G-v~~-e~l~~~~~~~~~~lp~~~~~~~~---------~~~~~ 296 (508)
++.|.. +.++...+-....+.+.+.++| ++. +....-+..++.+..-+.+...- .+.-.
T Consensus 717 l~ei~~~v~n~~~~Il~~~e~mR~y~l~~n~~~ihvvgDI~kid~~~~~Wn~l~~~~~~~nP~~~f~~tf~~~~~~s~e~ 796 (1022)
T KOG0961|consen 717 LEEISKDVMNNPEAILEKLEQMRSYALFSNGVNIHVVGDIDKIDPKMLSWNWLQADPRFGNPGHQFSATFEAGENVSLEL 796 (1022)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhhcceEEEEEeehhcCCccccCchhhhcCcccCCchhhcccccccCcccceec
Confidence 344421 2233333312355788889999 642 33332233333332212111110 11111
Q ss_pred C-C--eeEee-CCCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEE
Q 010516 297 G-G--DYRCQ-ADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSA 372 (508)
Q Consensus 297 ~-~--~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a 372 (508)
| + ...+. +.++.+.+....+....| .+++.+...++.++|+. |.+++|+.||-. |++|+++.
T Consensus 797 gsssk~~~I~~p~sESs~l~~sip~~~~w-~dpel~~~~l~~~YL~~------------~eGPfW~~IRG~-GLAYGanm 862 (1022)
T KOG0961|consen 797 GSSSKELLIGVPGSESSFLYQSIPLDANW-NDPELIPAMLFGQYLSQ------------CEGPFWRAIRGD-GLAYGANM 862 (1022)
T ss_pred cCCcceeEecCCCccccceeeeccccccc-CCcchhHHHHHHHHHHh------------cccchhhhhccc-chhcccee
Confidence 1 1 22232 344555555554555568 66899999999999996 668999999965 89999999
Q ss_pred eecCCCCcceEEEEEEeCcchHHHHHHHHHHHHHHhhC-CCCCCHHHHHHHHHHHHHHHHHhccChHHHHH--HHHHHHH
Q 010516 373 FSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVAT-PGEVDQVQLDRAKQSTKSAILMNLESRMVVSE--DIGRQVL 449 (508)
Q Consensus 373 ~~~~~~~~g~~~i~~~~~p~~~~~~~~~~~~~l~~l~~-~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~--~~~~~~~ 449 (508)
+..+..+...|.||...+|...-+.- .+.++++.+ .+++++.+|+-||...+..+......-.+-+. .+...+
T Consensus 863 ~~~~d~~~~~~~iyr~ad~~kaye~~---rdiV~~~vsG~~e~s~~~~egAk~s~~~~~~~~Eng~~~~a~~~~~l~~~- 938 (1022)
T KOG0961|consen 863 FVKPDRKQITLSIYRCADPAKAYERT---RDIVRKIVSGSGEISKAEFEGAKRSTVFEMMKRENGTVSGAAKISILNNF- 938 (1022)
T ss_pred EEeccCCEEEEEeecCCcHHHHHHHH---HHHHHHHhcCceeecHHHhccchHHHHHHHHHHhccceechHHHHHHHHH-
Confidence 98877777788888888775544444 444444444 13599999999999998887654422222121 222223
Q ss_pred HcCCCCC-HHHHHHHHhcCCHHHHHHHHHHHhc
Q 010516 450 TYGERKP-VEHFLKTVEGVTAKDIASVAQKLLS 481 (508)
Q Consensus 450 ~~g~~~~-~~~~~~~i~~vT~~Di~~~a~~~l~ 481 (508)
.+.+.+ ...++++|.+||.+|+.+..+.|+.
T Consensus 939 -~q~~~~fn~~~leri~nvT~~~~~~~~~~y~~ 970 (1022)
T KOG0961|consen 939 -RQTPHPFNIDLLERIWNVTSEEMVKIGGPYLA 970 (1022)
T ss_pred -HhcCCcccHHHHHHHHHhhHHHHHHhccccee
Confidence 233332 4889999999999999999988764
No 22
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=98.59 E-value=1.4e-06 Score=82.74 Aligned_cols=121 Identities=20% Similarity=0.239 Sum_probs=82.0
Q ss_pred CCCCCCCCCCCceEEEEcCCCcEEEEeeCCC-CeEEEEEEEcccccCCCCCCCcHHHHHHHhhc-cCCCCCChHHHHHHH
Q 010516 67 PPSLPDYVEPGKTKISTLPNGVKIASETSVS-PVASISLYVGCGSIYESPISFGTTHLLERMAF-RSTRNRSHLRIVREV 144 (508)
Q Consensus 67 p~~~~~~~~~~~~~~~~L~NGl~v~~~~~~~-~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~-~gt~~~s~~~l~~~l 144 (508)
..+++...+...+....+ +|++|++.+.++ ..+++.++|+.+..... ..-...|+..++. -||+++++.++...+
T Consensus 59 ~~Di~~~~~~~~~~~~~~-~~~~v~~~~~~TnGI~Y~~l~fdl~~l~~e--~l~yl~Ll~~ll~~lgT~~~sy~el~~~i 135 (248)
T PF08367_consen 59 LSDIPREIEKIPLEVEKL-GGIPVLFHEQPTNGIVYVRLYFDLSDLPEE--DLPYLPLLTDLLGELGTKNYSYEELSNEI 135 (248)
T ss_dssp GGGS-SS------EECCC-TTCEEEEEE---TTEEEEEEEEE-TTS-CC--CHCCHHHHHHHCCCS-BSSS-HHHHHHHH
T ss_pred HHhcCCCCCCCCceeeec-CCccEEEEEcCCCCeEEEEEEecCCCCCHH--HHHhHHHHHHHHHhCCCCCCCHHHHHHHH
Confidence 455665555555555443 689999877664 59999999999976653 3444455555544 599999999999999
Q ss_pred HHcCCeeEEeec-----------ceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHH
Q 010516 145 EAIGGNVQASAS-----------REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDW 190 (508)
Q Consensus 145 ~~~g~~~~~~~~-----------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~ 190 (508)
..+.|++++++. ..++.++++|+.++++++++++.+++.++.|++.
T Consensus 136 ~~~tGGis~~~~~~~~~~~~~~~~~~l~is~k~L~~~~~~~~~ll~eil~~~~f~d~ 192 (248)
T PF08367_consen 136 DLYTGGISFSIEVYTDYDDDDKYRPYLVISAKCLDEKLDEAFELLSEILTETDFDDK 192 (248)
T ss_dssp HHHSSEEEEEEEEEEEECTECCCEEEEEEEEEEEGGGHHHHHHHHHHHHHCB-TT-H
T ss_pred HHhCCCeEEEeeeccCCCCccceeEEEEEEEEeHhhhHHHHHHHHHHHHhccCCCcH
Confidence 998877766652 1268899999999999999999999999999875
No 23
>PF03410 Peptidase_M44: Protein G1; InterPro: IPR005072 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This group of metallopeptidases belong to MEROPS peptidase family M44 (clan ME). The active site residues for members of this family and family M16 occur in the motif HXXEHProtein. The type example is the vaccinia virus-type metalloendopeptidase G1 from vaccinia virus, it is a metalloendopeptidase expressed by many Poxviridae which appears to play a role in the maturation of viral proteins.; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0019067 viral assembly, maturation, egress, and release
Probab=98.00 E-value=0.00017 Score=71.21 Aligned_cols=185 Identities=19% Similarity=0.252 Sum_probs=115.2
Q ss_pred EEcCCCcEEEEeeCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeEEeecceeEE
Q 010516 82 STLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMG 161 (508)
Q Consensus 82 ~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~ 161 (508)
..|+||+||...+.-...+++++. +.|.-.+-.+-.|+|||+||++-. +++..+ ..||+|++.+|+
T Consensus 2 IvL~NGVRiFin~~M~KDIYlGIs-~FGFe~DI~~iLGiAHLLEHILIs----FD~~~F---------~ANASTaRsYMS 67 (590)
T PF03410_consen 2 IVLSNGVRIFINPSMKKDIYLGIS-NFGFENDIGEILGIAHLLEHILIS----FDSSKF---------LANASTARSYMS 67 (590)
T ss_pred eEecCceEEEecCccccceEEeec-ccccccchHHHHhHHHHHHHHeee----cchHHh---------hcccchhhhhhh
Confidence 579999999998877777888775 455555556778999999999753 222222 358999999999
Q ss_pred EEEEcccCC-hHHHHHHHHHhhhCCC-----CCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCCh
Q 010516 162 YSFDALKTY-VPEMVELLIDCVRNPV-----FLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPE 235 (508)
Q Consensus 162 ~~~~~~~~~-l~~~l~ll~~~~~~p~-----f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (508)
|=+.+.... ...++..+..++..-. |+...++...+.+..|+ .-.|-...+++.+.-. .+|.+-+ .|..
T Consensus 68 FWC~si~g~~~~DAvrtliSWFF~~g~Lk~~F~~~~i~~hikELENEY--YFRnEvfHCmDvLtfL-~gGDLYN--GGRi 142 (590)
T PF03410_consen 68 FWCKSIRGRTYIDAVRTLISWFFDNGKLKDNFSRSKIKNHIKELENEY--YFRNEVFHCMDVLTFL-GGGDLYN--GGRI 142 (590)
T ss_pred hhhhhccCCChhHHHHHHHHHhhcCCcccccccHhHHHHHHHHHhhhh--hhhhhHHHHHHHHHHh-cCCcccC--CchH
Confidence 998888765 4567777777775522 44444433332222222 1233334555555432 2332222 2455
Q ss_pred HHhccCCHHHHHHHHHhh---cCCCCeEEEEcCCCHHHHHHHHHhhhcCCCCCCCC
Q 010516 236 SAINRLNSTLLEEFVAEN---YTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR 288 (508)
Q Consensus 236 ~~l~~l~~~~l~~f~~~~---~~~~~~~l~i~Gv~~e~l~~~~~~~~~~lp~~~~~ 288 (508)
..+++++ ++++..... ....|+++++=-.+ +.+..++++.||.||.-+..
T Consensus 143 ~ML~~l~--~i~~mL~~RM~~I~GpniVIFVk~l~-~~~l~lL~~TFGtLP~cP~~ 195 (590)
T PF03410_consen 143 DMLNNLN--DIRNMLSNRMHRIIGPNIVIFVKELN-PNILSLLSNTFGTLPSCPLT 195 (590)
T ss_pred HHHhhhH--HHHHHHHHHHHhhcCCcEEEEEeccC-HHHHHHHHHhcCCCCCCccc
Confidence 5666553 333333332 34567776665577 45789999999999976644
No 24
>COG0612 PqqL Predicted Zn-dependent peptidases [General function prediction only]
Probab=97.89 E-value=0.00036 Score=72.39 Aligned_cols=181 Identities=17% Similarity=0.143 Sum_probs=120.2
Q ss_pred CCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCccc-HHHHHHHhhCCCeEEEEEeecCCCCcceEE
Q 010516 306 SGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYS-RLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 384 (508)
Q Consensus 306 ~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s-~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~ 384 (508)
.+...+.+.+.....+..........+|.+++..|.. +..+ -+.+.+- +.|.. ..|+.+. +. ..
T Consensus 36 ~~~vs~~~~v~~Gs~~e~~~~~G~AH~lehm~fkgt~--------~~~~~~i~~~~~-~~G~~--~na~ts~--d~--t~ 100 (438)
T COG0612 36 APTVSLDVWVKAGSRAEPAGKAGIAHFLEHMAFKGTT--------GLPSAELAEAFE-KLGGQ--LNAFTSF--DY--TV 100 (438)
T ss_pred CCEEEEEEEEeecccCCCCCcccHHHHHHHHHccCCC--------CCChHHHHHHHH-HhcCe--eeccccc--hh--hh
Confidence 3555555555543333344455667788888765411 0001 3554554 34433 3343331 11 12
Q ss_pred EEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCC--CHHHHHH
Q 010516 385 IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERK--PVEHFLK 462 (508)
Q Consensus 385 i~~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~--~~~~~~~ 462 (508)
.++.+.+++.+++++.+.+.+.+- .+++++|++-|..++..+.+..+++...+.......+..+.+. +..-..+
T Consensus 101 y~~~~l~~~~~~~l~llad~l~~p----~f~~~~~e~Ek~vil~ei~~~~d~p~~~~~~~l~~~~~~~~p~~~~~~G~~e 176 (438)
T COG0612 101 YYLSVLPDNLDKALDLLADILLNP----TFDEEEVEREKGVILEEIRMRQDDPDDLAFERLLEALYGNHPLGRPILGTEE 176 (438)
T ss_pred hhhhhchhhhHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHhhccCCCCCCCCCCHH
Confidence 233357888888888888776652 4999999999999999999999999999888888877444443 2333478
Q ss_pred HHhcCCHHHHHHHHHHHhc-CCceEEEEcCCCCCCCHHHHHhHh
Q 010516 463 TVEGVTAKDIASVAQKLLS-SPLTMASYGDVINVPSYDAVSSKF 505 (508)
Q Consensus 463 ~i~~vT~~Di~~~a~~~l~-~~~~~~~~G~~~~~p~~~~~~~~~ 505 (508)
.|+++|++||+++.++|.. ++.+++++||+..---.+.+.+.|
T Consensus 177 ~I~~it~~dl~~f~~k~Y~p~n~~l~vvGdi~~~~v~~~~~~~f 220 (438)
T COG0612 177 SIEAITREDLKDFYQKWYQPDNMVLVVVGDVDAEEVVELIEKYF 220 (438)
T ss_pred HHHhCCHHHHHHHHHHhcCcCceEEEEecCCCHHHHHHHHHHHH
Confidence 8999999999999999999 999999999975433334444443
No 25
>PHA03081 putative metalloprotease; Provisional
Probab=97.83 E-value=0.00049 Score=68.23 Aligned_cols=185 Identities=18% Similarity=0.226 Sum_probs=117.6
Q ss_pred EEcCCCcEEEEeeCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeEEeecceeEE
Q 010516 82 STLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMG 161 (508)
Q Consensus 82 ~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~ 161 (508)
.+|+||+||...+.-...+++++. +.|.-.+-.+-.|++||+||++.. +++.. ...++++.+.+++
T Consensus 2 i~~~ngvr~f~~~~m~kdiy~gi~-~fgfe~di~~~lg~ahllehili~----fd~~~---------f~anast~r~yms 67 (595)
T PHA03081 2 IVLSNGVRIFINPSMKKDIYLGIS-NFGFENDIGEILGIAHLLEHILIS----FDSSK---------FVANASTARSYMS 67 (595)
T ss_pred eEecCceEEEecCccccceEEeec-ccccccchHHHHhHHHHHHHHeee----cchHH---------hcccchhhhhhHh
Confidence 578999999998877777777765 455555555778999999999753 22221 1357889999999
Q ss_pred EEEEcccCC-hHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHhcCCCCCCCCCCCh
Q 010516 162 YSFDALKTY-VPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVS-----NNPQSLLLEAIHSAGYSGALANPLLAPE 235 (508)
Q Consensus 162 ~~~~~~~~~-l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~~~~~~ 235 (508)
|-+.+.... ...++..+..++..+.-....|...+ ++.-+++.+ .+-...+++.+.-. .+|.+-+ .|-.
T Consensus 68 fwc~sirg~~y~DAvrtliSWFF~~~~Lr~~F~~~~--ik~~ikELENEYYFRnEvfHCmDvLTfL-~gGDLYN--GGRi 142 (595)
T PHA03081 68 FWCKSIRGRSYIDAIRTLISWFFDNGKLKDNFSLSK--IRNHIKELENEYYFRNEVFHCMDVLTFL-GGGDLYN--GGRI 142 (595)
T ss_pred HhhHhhcCCchHHHHHHHHHHhccCCccccccchhh--HHHHHHHHhhhhhhhhhhHHHHHHHHHh-cCCcccC--CchH
Confidence 988887654 46888888888877664444444322 333333322 33334555555432 2332222 2455
Q ss_pred HHhccCCHHHHHHHHHhh---cCCCCeEEEEcCCCHHHHHHHHHhhhcCCCCCCCC
Q 010516 236 SAINRLNSTLLEEFVAEN---YTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR 288 (508)
Q Consensus 236 ~~l~~l~~~~l~~f~~~~---~~~~~~~l~i~Gv~~e~l~~~~~~~~~~lp~~~~~ 288 (508)
..|+++ +++++..... ....|+++++=-.+ +.+..++++.||.||.-+..
T Consensus 143 ~ML~~l--~~i~~~L~~RM~~I~GpniVIFVk~ln-~~~l~lL~~TFGtLP~~P~~ 195 (595)
T PHA03081 143 DMLDNL--NDVRDMLSNRMHRISGPNIVIFVKELN-PNTLSLLNNTFGTLPSCPET 195 (595)
T ss_pred HHHhhh--HHHHHHHHHHHHhhcCCcEEEEEeccC-HHHHHHHHHhcCCCCCCccc
Confidence 666655 3444444333 34567776665577 45789999999999976643
No 26
>TIGR02110 PQQ_syn_pqqF coenzyme PQQ biosynthesis probable peptidase PqqF. In a subset of species that make coenzyme PQQ (pyrrolo-quinoline-quinone), this probable peptidase is found in the PQQ biosynthesis region and is thought to act as a protease on PqqA (TIGR02107), a probable peptide precursor of the coenzyme. PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.
Probab=97.71 E-value=0.0036 Score=67.70 Aligned_cols=169 Identities=8% Similarity=-0.030 Sum_probs=109.5
Q ss_pred CCCCceEEEEEeecCCCCCCCc--chHHHHHHHHhcCCCCCCCCCCCCCCcccH-HHHHHHhhCCCeEEEEEeecCCCCc
Q 010516 304 ADSGLTHFVLAFELPGGWHKDK--DAMTLTVLQMLLGGGGSFSAGGPGKGMYSR-LYRRVLNEFPQVQSFSAFSNIYNHS 380 (508)
Q Consensus 304 ~~~~~~~v~~~~~~~~~~~~~~--~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~-L~~~lR~~~~~~Y~v~a~~~~~~~~ 380 (508)
+..+...+.+.+.... .+++ ......++..+|..|. +.+... =+.+.-++.|..+++ +.+ .
T Consensus 17 p~~p~vav~l~v~aGS--~~Ep~~~~GLAHfLEHMLFkGT--------~~~~~~~~i~~~le~lGG~lNA--~Ts----~ 80 (696)
T TIGR02110 17 PDAKRAAALLRVAAGS--HDEPSAWPGLAHFLEHLLFLGG--------ERFQGDDRLMPWVQRQGGQVNA--TTL----E 80 (696)
T ss_pred CCCCEEEEEEEEeecc--CCCCCCCCcHHHHHHHHHhcCC--------CCCCcHHHHHHHHHHhCCeEEE--EEc----C
Confidence 3446677777776654 3332 3445567766665542 122221 133444555654443 322 2
Q ss_pred ceEEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCC--CHH
Q 010516 381 GMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERK--PVE 458 (508)
Q Consensus 381 g~~~i~~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~--~~~ 458 (508)
-...+++.+.+++.+++++.+.+.+.+ --++++++++-|..++..+....+++...+.......++.+.+. +..
T Consensus 81 d~T~y~~~v~~~~l~~aL~lLaD~l~~----P~f~eeeierEr~vvl~Ei~~~~ddp~~~~~~~l~~~l~~~HPy~~~~i 156 (696)
T TIGR02110 81 RTTAFFFELPAAALAAGLARLCDMLAR----PLLTAEDQQREREVLEAEYIAWQNDADTLREAALLDALQAGHPLRRFHA 156 (696)
T ss_pred CeEEEEEEecHHHHHHHHHHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCCCCCCC
Confidence 235567788888888888777665554 23999999999999999999998888887776666555333222 111
Q ss_pred HHHHHHhc---CCHHHHHHHHHHHhc-CCceEEEEcCC
Q 010516 459 HFLKTVEG---VTAKDIASVAQKLLS-SPLTMASYGDV 492 (508)
Q Consensus 459 ~~~~~i~~---vT~~Di~~~a~~~l~-~~~~~~~~G~~ 492 (508)
-..+.|++ +|.+||+++.+++.. ++.+++++||.
T Consensus 157 Gt~esL~~it~~t~edL~~F~~~~Y~p~NmvLvIvGdv 194 (696)
T TIGR02110 157 GSRDSLALPNTAFQQALRDFHRRHYQAGNMQLWLQGPQ 194 (696)
T ss_pred CCHHHHhCcccchHHHHHHHHHHhcchhcEEEEEEeCC
Confidence 12344554 559999999999998 99999999986
No 27
>KOG0960 consensus Mitochondrial processing peptidase, beta subunit, and related enzymes (insulinase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.038 Score=54.02 Aligned_cols=171 Identities=15% Similarity=0.134 Sum_probs=118.9
Q ss_pred CCCceEEEEEeecCCCCCCCcchHHHHHHHH-hcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcceE
Q 010516 305 DSGLTHFVLAFELPGGWHKDKDAMTLTVLQM-LLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMF 383 (508)
Q Consensus 305 ~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~-lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~ 383 (508)
....+.|.+.+....-+-+.++......|.. ++.|.. .|--..|-.+ ...+++..+.|...-.-
T Consensus 51 ~a~TATVGVwidaGSR~EnekNNG~ahFLEhlaFKGT~------------~Rs~~alElE---ieniGahLNAytSReqT 115 (467)
T KOG0960|consen 51 SASTATVGVWIDAGSRFENEKNNGTAHFLEHLAFKGTK------------NRSQAALELE---IENIGAHLNAYTSREQT 115 (467)
T ss_pred CCcceEEEEEeccCccccccccccHHHHHHHHHhcCCC------------cchhHHHHHH---HHHHHHHhcccccccce
Confidence 4456666666655542346778888888877 444321 3332333222 22233444444433444
Q ss_pred EEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCC--HHHHH
Q 010516 384 GIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKP--VEHFL 461 (508)
Q Consensus 384 ~i~~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~--~~~~~ 461 (508)
..|+.|-++.++++++.+.+.+.+ ..+.+.++++-|..++..+....++-....-++.+...+.|.|.. ..--.
T Consensus 116 ~yyakal~~dv~kavdiLaDIlqn----s~L~~s~IerER~vILrEmqevd~~~~eVVfdhLHatafQgtPL~~tilGp~ 191 (467)
T KOG0960|consen 116 VYYAKALSKDVPKAVDILADILQN----SKLEESAIERERDVILREMQEVDKNHQEVVFDHLHATAFQGTPLGRTILGPS 191 (467)
T ss_pred eeehhhccccchHHHHHHHHHHHh----CccchhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhcCCcccccccChh
Confidence 567888899999999988886554 348999999999999999988777777777777777777777763 45567
Q ss_pred HHHhcCCHHHHHHHHHHHhc-CCceEEEEcCCCC
Q 010516 462 KTVEGVTAKDIASVAQKLLS-SPLTMASYGDVIN 494 (508)
Q Consensus 462 ~~i~~vT~~Di~~~a~~~l~-~~~~~~~~G~~~~ 494 (508)
+.|++|+.+|++++++.... .+++++..|.++.
T Consensus 192 enI~si~r~DL~~yi~thY~~~RmVlaaaGgV~H 225 (467)
T KOG0960|consen 192 ENIKSISRADLKDYINTHYKASRMVLAAAGGVKH 225 (467)
T ss_pred hhhhhhhHHHHHHHHHhcccCccEEEEecCCcCH
Confidence 88999999999999998777 8888888897643
No 28
>PF00675 Peptidase_M16: Insulinase (Peptidase family M16) This is family M16 in the peptidase classification. ; InterPro: IPR011765 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. The majority of the sequences in this entry are metallopeptidases and non-peptidase homologs belong to MEROPS peptidase family M16 (clan ME), subfamilies M16A, M16B and M16C; they include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The proteins classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. ; GO: 0004222 metalloendopeptidase activity, 0006508 proteolysis; PDB: 3P7L_A 3P7O_A 3TUV_A 3GO9_A 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B ....
Probab=95.86 E-value=0.6 Score=40.19 Aligned_cols=132 Identities=17% Similarity=0.119 Sum_probs=88.1
Q ss_pred eCCCCceEEEEEeecCCCCCCCc--chHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCc
Q 010516 303 QADSGLTHFVLAFELPGGWHKDK--DAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHS 380 (508)
Q Consensus 303 ~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~ 380 (508)
+++.+...+.+.|.+.. ..++ ......++..++..|+ +++.+.=+.+..++.|..+.+.+. .
T Consensus 7 ~~~~~~~~~~l~~~~Gs--~~e~~~~~G~a~ll~~l~~~gs--------~~~~~~~l~~~l~~~G~~~~~~t~------~ 70 (149)
T PF00675_consen 7 DPGSPVVSVSLVFKAGS--RYEPPGKPGLAHLLEHLLFRGS--------KKYSSDELQEELESLGASFNASTS------R 70 (149)
T ss_dssp STTSSEEEEEEEES-SG--GGSCTTTTTHHHHHHHHTTSBB--------SSSBHHHHHHHHHHTTCEEEEEEE------S
T ss_pred cCCCCEEEEEEEEeecc--CCCCCCCCchhhhhhhhccccc--------chhhhhhhHHHhhhhccccceEec------c
Confidence 34667788888887654 3332 2466777877776542 233333333444566766655443 2
Q ss_pred ceEEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCC
Q 010516 381 GMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER 454 (508)
Q Consensus 381 g~~~i~~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~ 454 (508)
....+++.+.+++.+++++.+.+.+..- .++++++++.|..++..+....+++...+..........+.+
T Consensus 71 d~t~~~~~~~~~~~~~~l~~l~~~~~~P----~f~~~~~~~~r~~~~~ei~~~~~~~~~~~~~~l~~~~f~~~p 140 (149)
T PF00675_consen 71 DSTSYSASVLSEDLEKALELLADMLFNP----SFDEEEFEREREQILQEIEEIKENPQELAFEKLHSAAFRGHP 140 (149)
T ss_dssp SEEEEEEEEEGGGHHHHHHHHHHHHHSB----GGCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSG
T ss_pred cceEEEEEEecccchhHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHhccCC
Confidence 3466778888888888888888776653 399999999999999999988878766666666666555443
No 29
>KOG2067 consensus Mitochondrial processing peptidase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.72 E-value=0.099 Score=51.29 Aligned_cols=122 Identities=16% Similarity=0.063 Sum_probs=88.3
Q ss_pred HHHHHcCCeeEEeecceeEEEEEEcccCChHHHHHHHHHhhhCCC--CCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 010516 142 REVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPV--FLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIH 219 (508)
Q Consensus 142 ~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~--f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~ 219 (508)
.+++...+-.+.|.+..-+++.++++++...++++++..-|.+.. .+++++++.|.+++..+-....+-.-.+.+.-+
T Consensus 319 ~wv~sctAfnhsy~DtGlfgi~~s~~P~~a~~aveli~~e~~~~~~~v~~~el~RAK~qlkS~LlMNLESR~V~~EDvGR 398 (472)
T KOG2067|consen 319 HWVYSCTAFNHSYSDTGLFGIYASAPPQAANDAVELIAKEMINMAGGVTQEELERAKTQLKSMLLMNLESRPVAFEDVGR 398 (472)
T ss_pred HHHHHhhhhhccccCCceeEEeccCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcccccchhHHHHhH
Confidence 345555666777778888999999999999999999988776643 889999999999999888655444445556666
Q ss_pred HHhcCCCCCCCCCCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC
Q 010516 220 SAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG 265 (508)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G 265 (508)
+.+-.+.+ .++..-.+.|++++.+|+.++..+.++ .+-++...|
T Consensus 399 QVL~~g~r-k~p~e~~~~Ie~lt~~DI~rva~kvlt-~~p~va~~G 442 (472)
T KOG2067|consen 399 QVLTTGER-KPPDEFIKKIEQLTPSDISRVASKVLT-GKPSVAAFG 442 (472)
T ss_pred HHHhccCc-CCHHHHHHHHHhcCHHHHHHHHHHHhc-CCceeccCC
Confidence 65543322 222223477899999999999998875 333444445
No 30
>PF05193 Peptidase_M16_C: Peptidase M16 inactive domain; InterPro: IPR007863 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. These metallopeptidases belong to MEROPS peptidase family M16 (clan ME). They include proteins, which are classified as non-peptidase homologues either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. The peptidases in this group of sequences include: Insulinase, insulin-degrading enzyme (3.4.24.56 from EC) Mitochondrial processing peptidase alpha subunit, (Alpha-MPP, 3.4.24.64 from EC) Pitrlysin, Protease III precursor (3.4.24.55 from EC) Nardilysin, (3.4.24.61 from EC) Ubiquinol-cytochrome C reductase complex core protein I,mitochondrial precursor (1.10.2.2 from EC) Coenzyme PQQ synthesis protein F (3.4.99 from EC) These proteins do not share many regions of sequence similarity; the most noticeable is in the N-terminal section. This region includes a conserved histidine followed, two residues later by a glutamate and another histidine. In pitrilysin, it has been shown [] that this H-x-x-E-H motif is involved in enzymatic activity; the two histidines bind zinc and the glutamate is necessary for catalytic activity. The mitochondrial processing peptidase consists of two structurally related domains. One is the active peptidase whereas the other, the C-terminal region, is inactive. The two domains hold the substrate like a clamp [].; GO: 0004222 metalloendopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 1BE3_B 1PP9_B 2A06_B 1SQB_B 1SQP_B 1L0N_B 1SQX_B 1NU1_B 1L0L_B 2FYU_B ....
Probab=87.48 E-value=5.2 Score=35.00 Aligned_cols=108 Identities=17% Similarity=0.187 Sum_probs=65.9
Q ss_pred CcEEEEeeCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHH-HcCCe--eEEee----ccee
Q 010516 87 GVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVE-AIGGN--VQASA----SREQ 159 (508)
Q Consensus 87 Gl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~-~~g~~--~~~~~----~~~~ 159 (508)
+-.+.....+.+...+.+.+.+...... .......++.+++..+ ....|...+. ..|.. ++++. +...
T Consensus 67 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~~~l~~~l~~~----~~s~l~~~lr~~~~l~y~v~~~~~~~~~~~~ 141 (184)
T PF05193_consen 67 GKEIVIPSKDESQSIVSIAFPGPPIKDS-KDYFALNLLSSLLGNG----MSSRLFQELREKQGLAYSVSASNSSYRDSGL 141 (184)
T ss_dssp EEEEEEEESSSSSEEEEEEEEEEETGTS-TTHHHHHHHHHHHHCS----TTSHHHHHHHTTTTSESEEEEEEEEESSEEE
T ss_pred cccccccccccccccccccccccccccc-chhhHHHHHHHHHhcC----ccchhHHHHHhccccceEEEeeeeccccceE
Confidence 3344444444355556666665555222 4567788888888664 3335666665 44433 33332 2245
Q ss_pred EEEEEEcccCChHHHHHHHHHhhhC---CCCCHHHHHHHHHHH
Q 010516 160 MGYSFDALKTYVPEMVELLIDCVRN---PVFLDWEVNEQLTKV 199 (508)
Q Consensus 160 ~~~~~~~~~~~l~~~l~ll~~~~~~---p~f~~~~~~~~k~~~ 199 (508)
+.+.+.+.++++.++++.+.+.+.. --|++++|++.|+++
T Consensus 142 ~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~s~~el~~~k~~L 184 (184)
T PF05193_consen 142 FSISFQVTPENLDEAIEAILQELKRLREGGISEEELERAKNQL 184 (184)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHHHHHHCS-HHHHHHHHHHH
T ss_pred EEEEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 7777888778888888877766644 238999999988764
No 31
>KOG2583 consensus Ubiquinol cytochrome c reductase, subunit QCR2 [Energy production and conversion]
Probab=73.34 E-value=57 Score=32.72 Aligned_cols=168 Identities=11% Similarity=0.076 Sum_probs=93.1
Q ss_pred eeCCCCceEEEEEeecCCCCCCCcch--HHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCC
Q 010516 302 CQADSGLTHFVLAFELPGGWHKDKDA--MTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNH 379 (508)
Q Consensus 302 ~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~ 379 (508)
.+...+.+++.+.|.... +.++.. ....+|...-+...- + ..=+.-+|+-.+.+ .......+
T Consensus 37 ~e~~~~is~l~l~~~AGS--RYe~~~~~G~sHllr~f~g~~Tq--------~--~sal~ivr~se~~G----G~Lss~~t 100 (429)
T KOG2583|consen 37 REAPTAISSLSLAFRAGS--RYEPADQQGLSHLLRNFVGRDTQ--------E--RSALKIVRESEQLG----GTLSSTAT 100 (429)
T ss_pred ccCCCcceEEEEEEecCc--cCCccccccHHHHHHHhcccCcc--------c--cchhhhhhhhHhhC----ceeeeeee
Confidence 456678999999998766 444433 444455544332211 0 11223456554432 22233344
Q ss_pred cceEEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHH-HHcCCCCCHH
Q 010516 380 SGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQV-LTYGERKPVE 458 (508)
Q Consensus 380 ~g~~~i~~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~-~~~g~~~~~~ 458 (508)
.-.|++.+.+..++++-.+..+ .++..+..+-+-||+...-..+ ......+++...+....+.. ...|.-. .
T Consensus 101 Re~~~~tvt~lrd~~~~~l~~L----~~V~~~paFkPwEl~D~~~~ti-~~~l~~~t~~~~a~e~lH~aAfRngLgn--s 173 (429)
T KOG2583|consen 101 RELIGLTVTFLRDDLEYYLSLL----GDVLDAPAFKPWELEDVVLATI-DADLAYQTPYTIAIEQLHAAAFRNGLGN--S 173 (429)
T ss_pred cceEEEEEEEecccHHHHHHHH----HHhhcccCcCchhhhhhhhhhh-HHHhhhcChHHHHHHHHHHHHHhcccCC--c
Confidence 5678888888777765444444 3444422477777766663111 12233445544443333333 2233222 2
Q ss_pred HHHH--HHhcCCHHHHHHHHHHHhc-CCceEEEEcCC
Q 010516 459 HFLK--TVEGVTAKDIASVAQKLLS-SPLTMASYGDV 492 (508)
Q Consensus 459 ~~~~--~i~~vT~~Di~~~a~~~l~-~~~~~~~~G~~ 492 (508)
-|.. +|.+++.+||..|+++.+. .+..++-+|..
T Consensus 174 lY~p~~~vg~vss~eL~~Fa~k~fv~gn~~lvg~nvd 210 (429)
T KOG2583|consen 174 LYSPGYQVGSVSSSELKDFAAKHFVKGNAVLVGVNVD 210 (429)
T ss_pred ccCCcccccCccHHHHHHHHHHHhhccceEEEecCCC
Confidence 3332 5999999999999998887 88887777743
No 32
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=67.76 E-value=8.1 Score=23.36 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=18.0
Q ss_pred HHHHhhCCCCCCHHHHHHHHHHHH
Q 010516 404 ELISVATPGEVDQVQLDRAKQSTK 427 (508)
Q Consensus 404 ~l~~l~~~~~i~~~el~~ak~~~~ 427 (508)
.+..+...|.+|++|+++.|..++
T Consensus 7 ~L~~l~~~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 7 KLKELYDKGEISEEEYEQKKARLL 30 (31)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHh
Confidence 444444448899999999998865
No 33
>KOG1374 consensus Gamma tubulin [Cytoskeleton]
Probab=56.92 E-value=33 Score=34.05 Aligned_cols=172 Identities=20% Similarity=0.244 Sum_probs=93.5
Q ss_pred HHHHHHHHhcCCCCCC--------CCCCCCCCcccHHHHHHHhhCC----CeEEEEEeecCCCC------cceEEE-EEE
Q 010516 328 MTLTVLQMLLGGGGSF--------SAGGPGKGMYSRLYRRVLNEFP----QVQSFSAFSNIYNH------SGMFGI-QGT 388 (508)
Q Consensus 328 ~~~~vl~~lL~~~~s~--------~~g~pg~g~~s~L~~~lR~~~~----~~Y~v~a~~~~~~~------~g~~~i-~~~ 388 (508)
-.+.++..=..+..|| -|||-|.||.+-|.++|++.+. ..|+|......-.+ ..++.+ ...
T Consensus 117 ~ImdiIdrEad~~DsleGF~l~hSiAGGTGSGlGS~llErL~drypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~ 196 (448)
T KOG1374|consen 117 DIMDIIDREADGSDSLEGFVLCHSIAGGTGSGLGSFLLERLNDRYPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLT 196 (448)
T ss_pred HHHHHHHHhhcCCCcccceeEEEeecCCCCcchHHHHHHHHHHhchhhhheeeeeccCCCCccceEEecchHHHHHHHHh
Confidence 3556666666677777 5999999999999999999875 36777654421111 111110 000
Q ss_pred eCcchH----HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH-----------cC-
Q 010516 389 TGSDFV----SKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLT-----------YG- 452 (508)
Q Consensus 389 ~~p~~~----~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~-----------~g- 452 (508)
-+++.+ -.++..+.... +.. ..+|=.++........+.-...+..+.+.-..+..-+.. .+
T Consensus 197 ~nsD~vVVlDN~AL~ria~~~--l~i-~~ptF~~iNqLvstims~st~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~ 273 (448)
T KOG1374|consen 197 ENSDCVVVLDNTALHRIAADR--LHI-QNPTFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLYASLIPTPELHFLMTGY 273 (448)
T ss_pred hCCCeEEEeccHHHHHHHHHH--hcC-CCCCHHHHHHHHHHHHhhccccccchhhccCcHHHHHhhcCCCCCeeeeeccC
Confidence 011111 11333333333 333 337888888777777777766666666655444432211 11
Q ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHHhcCCceEEEEcC-CCCCCCHHHHHhH
Q 010516 453 ERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGD-VINVPSYDAVSSK 504 (508)
Q Consensus 453 ~~~~~~~~~~~i~~vT~~Di~~~a~~~l~~~~~~~~~G~-~~~~p~~~~~~~~ 504 (508)
.|..-+.... . +++..-+-++.+++|..+-.++..++ ....|.|-.+-..
T Consensus 274 tP~~sd~~~~-~-~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~~si~n~ 324 (448)
T KOG1374|consen 274 TPLTSDNSLA-T-AVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCYISILNI 324 (448)
T ss_pred CcccChhhhh-h-hhhcchHHHHHHHHhCcchhhhhccccccCCcchHhHHhh
Confidence 1111122222 2 45666666777788875555555555 5567777665544
No 34
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=39.54 E-value=2.1e+02 Score=28.74 Aligned_cols=41 Identities=10% Similarity=0.245 Sum_probs=29.0
Q ss_pred CCCcccHHHHHHHhhCCCeEEEEEeecCCCCcceEEEEEEeCcch
Q 010516 349 GKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDF 393 (508)
Q Consensus 349 g~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~i~~~~~p~~ 393 (508)
|.||.+.+-.+||+-..++.-|.++.+ .-.-++....+|-+
T Consensus 84 GeGLGNkFL~~IRevdaI~hVVr~f~d----~di~hv~~~vDP~~ 124 (372)
T COG0012 84 GEGLGNKFLDNIREVDAIIHVVRCFGD----TDIEHVEGKVDPVE 124 (372)
T ss_pred CCCcchHHHHhhhhcCeEEEEEEecCC----CcccCCCCCcCcHH
Confidence 567779999999999888888888754 23334444477743
No 35
>PRK11032 hypothetical protein; Provisional
Probab=36.70 E-value=67 Score=28.00 Aligned_cols=38 Identities=8% Similarity=0.132 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHh
Q 010516 393 FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMN 433 (508)
Q Consensus 393 ~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~ 433 (508)
.+.++++.+.+.+.... .+|++|++.+++.++.++..-
T Consensus 25 ~l~~~ve~a~~~~~~~~---elT~dEl~lv~~ylkRDL~ef 62 (160)
T PRK11032 25 DIDALVESARKRVDAAG---ELTRDEVDLITRAVRRDLEEF 62 (160)
T ss_pred HHHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHHH
Confidence 36667777776666653 499999999999999888654
No 36
>PF08367 M16C_assoc: Peptidase M16C associated; InterPro: IPR013578 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Metalloproteases are the most diverse of the four main types of protease, with more than 50 families identified to date. In these enzymes, a divalent cation, usually zinc, activates the water molecule. The metal ion is held in place by amino acid ligands, usually three in number. The known metal ligands are His, Glu, Asp or Lys and at least one other residue is required for catalysis, which may play an electrophillic role. Of the known metalloproteases, around half contain an HEXXH motif, which has been shown in crystallographic studies to form part of the metal-binding site []. The HEXXH motif is relatively common, but can be more stringently defined for metalloproteases as 'abXHEbbHbc', where 'a' is most often valine or threonine and forms part of the S1' subsite in thermolysin and neprilysin, 'b' is an uncharged residue, and 'c' a hydrophobic residue. Proline is never found in this site, possibly because it would break the helical structure adopted by this motif in metalloproteases []. This domain appears in eukaryotes as well as bacteria and tends to be found near the C terminus of metalloproteases and related sequences belonging to MEROPS peptidase family M16 (subfamily M16C, clan ME). These include: eupitrilysin, falcilysin, PreP peptidase, CYM1 peptidase and subfamily M16C non-peptidase homologues.; GO: 0008237 metallopeptidase activity, 0008270 zinc ion binding, 0006508 proteolysis; PDB: 2FGE_B 3S5I_A 3S5H_A 3S5M_A 3S5K_A.
Probab=36.09 E-value=3.7e+02 Score=25.20 Aligned_cols=119 Identities=18% Similarity=0.208 Sum_probs=71.5
Q ss_pred CCCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCC-CeEEEEEeecC---CCC
Q 010516 304 ADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFP-QVQSFSAFSNI---YNH 379 (508)
Q Consensus 304 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~-~~Y~v~a~~~~---~~~ 379 (508)
....-+++.+.|+.+. ...++...+.++..+|+..|. . +-=+..|-..+...-| +..++.+.... ...
T Consensus 87 ~TnGI~Y~~l~fdl~~--l~~e~l~yl~Ll~~ll~~lgT-----~-~~sy~el~~~i~~~tGGis~~~~~~~~~~~~~~~ 158 (248)
T PF08367_consen 87 PTNGIVYVRLYFDLSD--LPEEDLPYLPLLTDLLGELGT-----K-NYSYEELSNEIDLYTGGISFSIEVYTDYDDDDKY 158 (248)
T ss_dssp --TTEEEEEEEEE-TT--S-CCCHCCHHHHHHHCCCS-B-----S-SS-HHHHHHHHHHHSSEEEEEEEEEEEECTECCC
T ss_pred CCCCeEEEEEEecCCC--CCHHHHHhHHHHHHHHHhCCC-----C-CCCHHHHHHHHHHhCCCeEEEeeeccCCCCccce
Confidence 4456889999999987 677888899999999996532 1 1112334444444444 23333333332 123
Q ss_pred cceEEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHH-HHHHHHHHHHHHHHHhc
Q 010516 380 SGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQV-QLDRAKQSTKSAILMNL 434 (508)
Q Consensus 380 ~g~~~i~~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~-el~~ak~~~~~~~~~~~ 434 (508)
...|.+.+.|-.++++++++.+.+.+.+. .+++. .|.......+..+....
T Consensus 159 ~~~l~is~k~L~~~~~~~~~ll~eil~~~----~f~d~~rl~~ll~~~~s~~~~~i 210 (248)
T PF08367_consen 159 RPYLVISAKCLDEKLDEAFELLSEILTET----DFDDKERLKELLKELKSDMESSI 210 (248)
T ss_dssp EEEEEEEEEEEGGGHHHHHHHHHHHHHCB-----TT-HHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEEEeHhhhHHHHHHHHHHHHhcc----CCCcHHHHHHHHHHHHHHHHHhh
Confidence 45678888888999999999988887663 26665 44555555555554443
No 37
>PF07295 DUF1451: Protein of unknown function (DUF1451); InterPro: IPR009912 This family consists of several hypothetical bacterial proteins of around 160 residues in length. Members of this family contain four highly conserved cysteine resides toward the C-terminal region of the protein. The function of this family is unknown.
Probab=34.17 E-value=1.2e+02 Score=26.09 Aligned_cols=46 Identities=13% Similarity=0.080 Sum_probs=34.2
Q ss_pred cchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHH
Q 010516 391 SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMV 439 (508)
Q Consensus 391 p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~ 439 (508)
++.+.++++.+.+.+.... .+|++|++.++..++.++..-.+....
T Consensus 13 ~~~L~~~le~a~e~~~~~~---elT~eEl~lv~~ylkRDl~~~a~~~~~ 58 (146)
T PF07295_consen 13 EEELQEALEKAKEYLVAAG---ELTREELALVSAYLKRDLEEFARYYEE 58 (146)
T ss_pred HHHHHHHHHHHHHHHHHHh---hcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777776663 499999999999999988765444433
No 38
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=32.17 E-value=2.4e+02 Score=21.83 Aligned_cols=77 Identities=14% Similarity=0.150 Sum_probs=44.2
Q ss_pred cchHHHHHHHHHHHHHHhhC---CCC-CCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCC-CCCHHHHHHHHh
Q 010516 391 SDFVSKAIDLAARELISVAT---PGE-VDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGE-RKPVEHFLKTVE 465 (508)
Q Consensus 391 p~~~~~~~~~~~~~l~~l~~---~~~-i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~-~~~~~~~~~~i~ 465 (508)
|..+++++..+.+.+..... ++. ++.+||..+-............+.. ....+.+.+-..+. ..+.+++...+.
T Consensus 2 ~~~le~a~~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~-~v~~i~~elD~n~dG~Idf~EF~~l~~ 80 (93)
T cd05026 2 PTQLEGAMDTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPM-LVDKIMNDLDSNKDNEVDFNEFVVLVA 80 (93)
T ss_pred CcHHHHHHHHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHH-HHHHHHHHhCCCCCCCCCHHHHHHHHH
Confidence 45677888888888887772 133 8999998766554333222222323 33344444422222 345677777776
Q ss_pred cCC
Q 010516 466 GVT 468 (508)
Q Consensus 466 ~vT 468 (508)
.++
T Consensus 81 ~l~ 83 (93)
T cd05026 81 ALT 83 (93)
T ss_pred HHH
Confidence 553
No 39
>cd08804 Death_ank2 Death domain of Ankyrin-2. Death Domain (DD) of Ankyrin-2 (ANK-2) and related proteins. Ankyrins are modular proteins comprising three conserved domains, an N-terminal membrane-binding domain containing ANK repeats, a spectrin-binding domain and a C-terminal DD. ANK-2, also called ankyrin-B (for broadly expressed), is required for proper function of the Na/Ca ion exchanger-1 in cardiomyocytes, and is thought to function in linking integral membrane proteins to the underlying cytoskeleton. Human ANK-2 is associated with "Ankyrin-B syndrome", an atypical arrythmia disorder with risk of sudden cardiac death. It also plays key roles in the brain and striated muscle. Loss of ANK-2 is associated with significant nervous system defects and sarcomere disorganization. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other
Probab=32.07 E-value=2.1e+02 Score=21.88 Aligned_cols=57 Identities=14% Similarity=0.176 Sum_probs=36.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH-cCCCCCHHHHHHHHhcCCHHHHHHHH
Q 010516 413 EVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLT-YGERKPVEHFLKTVEGVTAKDIASVA 476 (508)
Q Consensus 413 ~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~-~g~~~~~~~~~~~i~~vT~~Di~~~a 476 (508)
++++.++++++..- .++.......+...+.. .|.......+...+.++...||..++
T Consensus 26 g~se~dI~~i~~~~-------~~~~~eq~~~mL~~W~~r~g~~At~~~L~~aL~~i~r~Div~~~ 83 (84)
T cd08804 26 DFTEEQIHQIRIEN-------PNSLQDQSHALLKYWLERDGKHATDTNLMKCLTKINRMDIVHLM 83 (84)
T ss_pred CCCHHHHHHHHHHC-------cccHHHHHHHHHHHHHHccCCCchHHHHHHHHHHcChHHHHHHh
Confidence 59999999988752 12222222233333322 34445577899999999999998775
No 40
>cd08779 Death_PIDD Death Domain of p53-induced protein with a death domain. Death domain (DD) found in PIDD (p53-induced protein with a death domain) and similar proteins. PIDD is a component of the PIDDosome complex, which is an oligomeric caspase-activating complex involved in caspase-2 activation and plays a role in mediating stress-induced apoptosis. The PIDDosome complex is composed of three components, PIDD, RAIDD and caspase-2, which interact through their DDs and DD-like domains. The DD of PIDD interacts with the DD of RAIDD, which also contains a Caspase Activation and Recruitment Domain (CARD) that interacts with the caspase-2 CARD. Autoproteolysis of PIDD determines the downstream signaling event, between pro-survival NF-kB or pro-death caspase-2 activation. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members
Probab=28.57 E-value=2.7e+02 Score=21.32 Aligned_cols=76 Identities=13% Similarity=0.128 Sum_probs=43.6
Q ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCHHHHHHHHHH
Q 010516 399 DLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQK 478 (508)
Q Consensus 399 ~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vT~~Di~~~a~~ 478 (508)
+.+-.....+...=++++.++++++...-.. +......+-..|.... .+.......+.+++.++...|+.+-.+.
T Consensus 10 ~~LG~~Wk~lar~LGlse~~Id~Ie~~~~~d----l~eq~~~mL~~W~~~~-~~~~atv~~L~~AL~~~gr~dlae~l~~ 84 (86)
T cd08779 10 GRLGLDWQAIGLHLGLSYRELQRIKYNNRDD----LDEQIFDMLFSWAQRQ-AGDPDAVGKLVTALEESGRQDLADEVRA 84 (86)
T ss_pred HHHhHHHHHHHHHcCCCHHHHHHHHHHCccC----HHHHHHHHHHHHHHhc-CCCchHHHHHHHHHHHcCHHHHHHHHHh
Confidence 3333333333332259999999988773211 1222222323343321 2333446789999999999999887765
Q ss_pred H
Q 010516 479 L 479 (508)
Q Consensus 479 ~ 479 (508)
.
T Consensus 85 ~ 85 (86)
T cd08779 85 V 85 (86)
T ss_pred h
Confidence 4
No 41
>PF05120 GvpG: Gas vesicle protein G ; InterPro: IPR007804 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in water to access oxygen and/or light. Proteins containing this family are involved in the formation of gas vesicles [].
Probab=27.20 E-value=1.9e+02 Score=21.94 Aligned_cols=39 Identities=10% Similarity=0.216 Sum_probs=26.3
Q ss_pred CcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH
Q 010516 390 GSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM 432 (508)
Q Consensus 390 ~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~ 432 (508)
+|+.+.+.+..+...+. . |.+|++++++....++..+..
T Consensus 29 Dp~~i~~~L~~L~~~~e---~-GEIseeEf~~~E~eLL~rL~~ 67 (79)
T PF05120_consen 29 DPAAIRRELAELQEALE---A-GEISEEEFERREDELLDRLEE 67 (79)
T ss_pred CHHHHHHHHHHHHHHHH---c-CCCCHHHHHHHHHHHHHHHHH
Confidence 45555444444443333 3 889999999999998877754
No 42
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=26.83 E-value=60 Score=28.67 Aligned_cols=42 Identities=24% Similarity=0.374 Sum_probs=33.5
Q ss_pred HHhccCCHHHHHHHHHhhc-CCCCeEEEEcC-CCHHHHHHHHHh
Q 010516 236 SAINRLNSTLLEEFVAENY-TGPRMVLAASG-VEHDQLVSVAEP 277 (508)
Q Consensus 236 ~~l~~l~~~~l~~f~~~~~-~~~~~~l~i~G-v~~e~l~~~~~~ 277 (508)
=.+++.+.+++++..+..- .+.++.+.++| ++.+.+.+.++.
T Consensus 104 I~lD~~~~~~~~~~v~~l~~~~~~v~ie~SGGI~~~ni~~ya~~ 147 (169)
T PF01729_consen 104 IMLDNMSPEDLKEAVEELRELNPRVKIEASGGITLENIAEYAKT 147 (169)
T ss_dssp EEEES-CHHHHHHHHHHHHHHTTTSEEEEESSSSTTTHHHHHHT
T ss_pred EEecCcCHHHHHHHHHHHhhcCCcEEEEEECCCCHHHHHHHHhc
Confidence 3568889999999998654 45679999999 999999888764
No 43
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=26.25 E-value=6.8e+02 Score=25.19 Aligned_cols=102 Identities=23% Similarity=0.145 Sum_probs=53.2
Q ss_pred EEEEEeCcchHHHHHHHHHHHHHH--------hhCCCCCCHHHHHHHHHHHHHHHHH--hccCh-HHHH-HHHHHHHHHc
Q 010516 384 GIQGTTGSDFVSKAIDLAARELIS--------VATPGEVDQVQLDRAKQSTKSAILM--NLESR-MVVS-EDIGRQVLTY 451 (508)
Q Consensus 384 ~i~~~~~p~~~~~~~~~~~~~l~~--------l~~~~~i~~~el~~ak~~~~~~~~~--~~~s~-~~~~-~~~~~~~~~~ 451 (508)
.+-+.|-|.+. +++...+.+.. ++..|.++++-|++..+- .+.. ..+|. .++. ..+....+ .
T Consensus 182 ~~afDtGPgN~--liD~~~~~~~~~~~D~~G~~A~~G~v~~~lL~~ll~~---pff~~~pPKStgrE~F~~~~~~~~l-~ 255 (365)
T PRK09585 182 VIGFDTGPGNA--LIDAWIQRHGGKPYDKDGAWAASGKVDEALLARLLAH---PYFALPPPKSTGRELFNLAWLERQL-A 255 (365)
T ss_pred eeEecCChhHH--HHHHHHHHHhCCCCCCCChHHhCCCCCHHHHHHHhcC---ccccCCCCCccChhhcCHHHHHHHH-H
Confidence 45678889877 66666666543 122155665555444322 1111 11111 1111 12222222 2
Q ss_pred CCCCCHHHHHHHHhcCCHHHHHHHHHHHhcCCceEEEEcC
Q 010516 452 GERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGD 491 (508)
Q Consensus 452 g~~~~~~~~~~~i~~vT~~Di~~~a~~~l~~~~~~~~~G~ 491 (508)
....+.++...-+-.+|.+.|.+.++++....-.+++.|-
T Consensus 256 ~~~~s~~D~~aTlt~~TA~sI~~~~~~~~~~~~~vlv~GG 295 (365)
T PRK09585 256 GFGLSPEDVQATLTELTAASIARAVRRLPPGPDELLVCGG 295 (365)
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCEEEEECC
Confidence 2224678888888889999998888766543223455553
No 44
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=24.46 E-value=1.1e+02 Score=29.06 Aligned_cols=45 Identities=13% Similarity=0.135 Sum_probs=38.4
Q ss_pred hHHhccCCHHHHHHHHHhhcCCCCeEEEEcCCCHHHHHHHHHhhh
Q 010516 235 ESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLL 279 (508)
Q Consensus 235 ~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~Gv~~e~l~~~~~~~~ 279 (508)
-.+++.|+.+.+++.+.+.-..-..++++|-.|.+|+.++..+..
T Consensus 163 FgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~ 207 (309)
T COG1125 163 FGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIA 207 (309)
T ss_pred ccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEE
Confidence 367899999999888888777788999999999999999988754
No 45
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=23.64 E-value=3.4e+02 Score=20.85 Aligned_cols=76 Identities=11% Similarity=0.178 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHhh-CCC---CCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCC-CCCHHHHHHHHhcC
Q 010516 393 FVSKAIDLAARELISVA-TPG---EVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGE-RKPVEHFLKTVEGV 467 (508)
Q Consensus 393 ~~~~~~~~~~~~l~~l~-~~~---~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~-~~~~~~~~~~i~~v 467 (508)
.+++++..+...+.+.. .++ .++.+||...-......+.....+...+ +.+...+-..+. ..+.+++...+..|
T Consensus 3 ~le~~i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~-~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 3 ETERCIESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVL-DRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred hHHHHHHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHH-HHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 45677788888887743 212 4999999888777665555433333333 334443321222 24577887777666
Q ss_pred CH
Q 010516 468 TA 469 (508)
Q Consensus 468 T~ 469 (508)
+.
T Consensus 82 ~~ 83 (89)
T cd05023 82 AV 83 (89)
T ss_pred HH
Confidence 43
No 46
>PF14659 Phage_int_SAM_3: Phage integrase, N-terminal SAM-like domain; PDB: 2KD1_A 2KOB_A 2KHQ_A 3LYS_E 2KIW_A 2KKP_A.
Probab=22.94 E-value=68 Score=21.88 Aligned_cols=17 Identities=29% Similarity=0.620 Sum_probs=12.3
Q ss_pred HhcCCHHHHHHHHHHHh
Q 010516 464 VEGVTAKDIASVAQKLL 480 (508)
Q Consensus 464 i~~vT~~Di~~~a~~~l 480 (508)
|++||+.||+++.++++
T Consensus 42 i~~It~~~i~~~~~~l~ 58 (58)
T PF14659_consen 42 IKDITPRDIQNFINELL 58 (58)
T ss_dssp GGG--HHHHHHHHHHH-
T ss_pred HHHCCHHHHHHHHHHcC
Confidence 78899999999988764
No 47
>cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa
Probab=21.01 E-value=2.4e+02 Score=19.52 Aligned_cols=45 Identities=9% Similarity=-0.003 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCeeEEee-cceeEEEEEEcccCChHHHHHHHHHhhh
Q 010516 139 RIVREVEAIGGNVQASA-SREQMGYSFDALKTYVPEMVELLIDCVR 183 (508)
Q Consensus 139 ~l~~~l~~~g~~~~~~~-~~~~~~~~~~~~~~~l~~~l~ll~~~~~ 183 (508)
++.+.+...|.++..-. +.....+++....++.+.+++.|++.+.
T Consensus 20 ~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~~~~~~lh~~~~ 65 (66)
T cd04922 20 TFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVHERFF 65 (66)
T ss_pred HHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHh
Confidence 45566777787765443 2244778888888889999999988775
No 48
>PF11517 Nab2: Nuclear abundant poly(A) RNA-bind protein 2 (Nab2); InterPro: IPR021083 Nab2 is a yeast heterogeneous nuclear ribonucleoprotein that modulates poly(A) tail length and mRNA. This is the N-terminal domain of the protein which mediates interactions with the C-terminal globular domain, Myosin-like protein 1 and the mRNA export factor, Gfd1 []. The N-terminal domain of Nab2 shows a structure of a helical fold. The N-terminal domain of Nab2 is thought to mediate protein:protein interactions that facilitate the nuclear export of mRNA []. An essential hydrophobic Phe73 patch on the N-terminal domain is thought to be an important component of the interface between Nab2 and Mlp1 [].; PDB: 3LCN_B 2V75_A 2JPS_A.
Probab=20.96 E-value=4.3e+02 Score=20.92 Aligned_cols=46 Identities=20% Similarity=0.217 Sum_probs=30.5
Q ss_pred cChHHHHHHHHHHHHHcCCCCC-HHHHHHHHhcCCHHHHHHHHHHHh
Q 010516 435 ESRMVVSEDIGRQVLTYGERKP-VEHFLKTVEGVTAKDIASVAQKLL 480 (508)
Q Consensus 435 ~s~~~~~~~~~~~~~~~g~~~~-~~~~~~~i~~vT~~Di~~~a~~~l 480 (508)
++..+.++.|.-.+.++|...+ .+++-...++|..+.+..+.+..|
T Consensus 28 EDv~YVAEyIvlLisNggs~esivqELssLFD~vs~~~l~~VVQtaF 74 (107)
T PF11517_consen 28 EDVNYVAEYIVLLISNGGSVESIVQELSSLFDSVSTEALTDVVQTAF 74 (107)
T ss_dssp SSHHHHHHHHHHHHHTT--HHHHHHHHHHH-TTS-HHHHHHHHHHHH
T ss_pred ccHHHHHHHhheeeeCCCCHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 4667788888877776666555 467777789999999888766433
No 49
>PF09568 RE_MjaI: MjaI restriction endonuclease; InterPro: IPR019068 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes the MjaI (recognises CTAG but cleavage site unknown) restriction endonuclease. ; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=20.45 E-value=4.9e+02 Score=22.93 Aligned_cols=24 Identities=13% Similarity=0.288 Sum_probs=20.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHh
Q 010516 457 VEHFLKTVEGVTAKDIASVAQKLL 480 (508)
Q Consensus 457 ~~~~~~~i~~vT~~Di~~~a~~~l 480 (508)
..++.+++++||.+|++++.+.+.
T Consensus 60 i~e~~~a~~~it~ed~~~wv~dLv 83 (170)
T PF09568_consen 60 ITEVKEALNKITEEDCINWVKDLV 83 (170)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhe
Confidence 467888899999999999998665
No 50
>COG3462 Predicted membrane protein [Function unknown]
Probab=20.34 E-value=1.6e+02 Score=23.71 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=20.8
Q ss_pred chHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHH
Q 010516 392 DFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTK 427 (508)
Q Consensus 392 ~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~ 427 (508)
++.+.+.+.+.+- .+. |++||||..+.++.+.
T Consensus 85 e~~sRA~eIlkER---~Ak-GEItEEEY~r~~~~ir 116 (117)
T COG3462 85 ERGSRAEEILKER---YAK-GEITEEEYRRIIRTIR 116 (117)
T ss_pred ccccHHHHHHHHH---Hhc-CCCCHHHHHHHHHHhc
Confidence 3444455555443 444 8899999999887653
No 51
>COG5023 Tubulin [Cytoskeleton]
Probab=20.05 E-value=62 Score=32.17 Aligned_cols=99 Identities=17% Similarity=0.211 Sum_probs=56.3
Q ss_pred CCCCCCCCcccHHHHHHHhhCC----CeEEEEEeecC-----CCCcceEEEEEEeCcc---h-H-HHHHHHHHHHHHHhh
Q 010516 344 SAGGPGKGMYSRLYRRVLNEFP----QVQSFSAFSNI-----YNHSGMFGIQGTTGSD---F-V-SKAIDLAARELISVA 409 (508)
Q Consensus 344 ~~g~pg~g~~s~L~~~lR~~~~----~~Y~v~a~~~~-----~~~~g~~~i~~~~~p~---~-~-~~~~~~~~~~l~~l~ 409 (508)
=+||-|.||.+-|..+||++++ +.|+|.-.... .+....+.++...+.. . + -+++-.+. ...+.
T Consensus 139 ~gGGTGSG~GslLLerl~~eypkK~~~tfSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~--~~~L~ 216 (443)
T COG5023 139 LGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDIC--RRNLR 216 (443)
T ss_pred ccCcCcccHHHHHHHHHHHhcchhheeEEEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHH--HHhcC
Confidence 4789999999999999999886 35655421100 0001111111100000 0 0 11222222 22333
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Q 010516 410 TPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIG 445 (508)
Q Consensus 410 ~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~ 445 (508)
. +.++=+++.+.+.++.+.....+.=+.+.-.++.
T Consensus 217 i-~~P~y~~lN~LIs~VmSsvTtslRfpG~ln~dl~ 251 (443)
T COG5023 217 I-QNPSYDDLNQLISTVMSSVTTSLRFPGYLNVDLR 251 (443)
T ss_pred C-CCCChHHHHHHHHHHHHhhhheeecCccccchHH
Confidence 4 4588999999999999999888877766655553
Done!