Query 010516
Match_columns 508
No_of_seqs 245 out of 1464
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 08:29:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010516.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010516hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hr6_A Alpha-MPP, mitochondria 100.0 1.6E-63 5.6E-68 520.1 53.6 428 77-506 4-451 (475)
2 1hr6_B Beta-MPP, mitochondrial 100.0 1.6E-58 5.3E-63 478.2 51.7 427 75-506 3-442 (443)
3 3hdi_A Processing protease; CA 100.0 1.2E-58 4.1E-63 476.0 50.3 406 79-499 2-411 (421)
4 3eoq_A Putative zinc protease; 100.0 1.9E-58 6.7E-63 472.2 49.2 398 79-493 2-405 (406)
5 1pp9_A Ubiquinol-cytochrome C 100.0 2.6E-58 8.8E-63 477.1 50.3 423 77-506 12-442 (446)
6 1pp9_B Ubiquinol-cytochrome C 100.0 4.5E-57 1.5E-61 466.6 52.7 420 75-501 20-439 (439)
7 3ami_A Zinc peptidase; alpha/b 100.0 7.2E-56 2.5E-60 458.6 46.9 415 76-502 4-432 (445)
8 3gwb_A Peptidase M16 inactive 100.0 6.2E-55 2.1E-59 449.9 45.1 406 76-496 11-425 (434)
9 3cx5_A Cytochrome B-C1 complex 100.0 3.7E-54 1.3E-58 443.6 44.7 412 80-506 2-427 (431)
10 3amj_B Zinc peptidase inactive 100.0 1.7E-53 5.8E-58 437.9 45.9 405 77-497 2-419 (424)
11 3d3y_A Uncharacterized protein 100.0 7.4E-49 2.5E-53 403.1 44.4 391 82-493 6-423 (425)
12 3go9_A Insulinase family prote 100.0 1.3E-47 4.5E-52 400.7 38.4 405 77-506 24-462 (492)
13 1q2l_A Protease III; hydrolase 100.0 6.9E-46 2.4E-50 418.1 40.0 405 75-494 17-441 (939)
14 3cww_A Insulysin, insulin-degr 100.0 7.7E-43 2.6E-47 395.2 38.0 403 75-492 31-455 (990)
15 2fge_A Atprep2;, zinc metallop 100.0 1.4E-42 4.9E-47 393.0 32.7 400 77-494 36-486 (995)
16 3cx5_B Cytochrome B-C1 complex 100.0 2.9E-41 9.8E-46 338.2 28.2 346 88-500 1-351 (352)
17 3s5m_A Falcilysin; M16 metallo 100.0 1.4E-40 4.8E-45 373.5 36.1 403 75-492 83-587 (1193)
18 1q2l_A Protease III; hydrolase 100.0 2.4E-37 8.1E-42 348.6 35.3 411 56-493 474-907 (939)
19 2fge_A Atprep2;, zinc metallop 100.0 7.6E-36 2.6E-40 337.9 29.9 393 77-498 552-981 (995)
20 3cww_A Insulysin, insulin-degr 100.0 3.9E-34 1.3E-38 323.9 36.8 414 56-495 492-936 (990)
21 3s5m_A Falcilysin; M16 metallo 100.0 6.7E-30 2.3E-34 287.1 23.1 382 85-493 724-1174(1193)
22 3ih6_A Putative zinc protease; 99.9 2.8E-23 9.5E-28 189.8 21.3 175 302-492 18-194 (197)
23 3ih6_A Putative zinc protease; 98.3 2.1E-05 7.1E-10 70.6 15.6 160 98-265 23-192 (197)
24 3amj_B Zinc peptidase inactive 98.0 0.00024 8.2E-09 71.6 17.6 173 306-493 23-199 (424)
25 3hdi_A Processing protease; CA 97.9 0.00054 1.9E-08 69.0 18.1 168 305-493 20-193 (421)
26 3eoq_A Putative zinc protease; 97.8 0.00097 3.3E-08 66.8 19.6 167 305-492 20-191 (406)
27 3gwb_A Peptidase M16 inactive 97.8 0.00037 1.3E-08 70.4 16.5 168 306-493 33-206 (434)
28 3d3y_A Uncharacterized protein 97.8 0.00054 1.9E-08 68.9 17.7 175 305-493 21-210 (425)
29 3cx5_A Cytochrome B-C1 complex 97.8 0.00068 2.3E-08 68.3 18.4 164 306-493 20-189 (431)
30 3cx5_B Cytochrome B-C1 complex 97.8 0.00077 2.6E-08 66.0 17.1 165 305-492 9-176 (352)
31 1hr6_B Beta-MPP, mitochondrial 97.7 0.0015 5.3E-08 66.0 18.4 166 96-265 243-426 (443)
32 1pp9_A Ubiquinol-cytochrome C 97.7 0.0016 5.6E-08 66.0 18.6 171 303-493 29-204 (446)
33 1pp9_B Ubiquinol-cytochrome C 97.6 0.0016 5.5E-08 65.8 17.7 165 305-491 41-211 (439)
34 3ami_A Zinc peptidase; alpha/b 97.6 0.0017 5.7E-08 65.9 16.7 167 306-493 26-199 (445)
35 1hr6_A Alpha-MPP, mitochondria 97.6 0.0021 7.3E-08 65.8 17.4 168 305-492 23-194 (475)
36 3go9_A Insulinase family prote 96.4 0.042 1.4E-06 56.4 14.3 163 94-265 261-446 (492)
37 1zav_U 50S ribosomal protein L 25.2 89 0.003 18.0 3.3 23 457-479 3-25 (30)
38 2v75_A Nuclear polyadenylated 20.6 2.5E+02 0.0084 21.0 5.7 46 435-480 26-72 (104)
No 1
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=100.00 E-value=1.6e-63 Score=520.14 Aligned_cols=428 Identities=35% Similarity=0.552 Sum_probs=394.5
Q ss_pred CceEEEEcCCCcEEEEeeCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeEEeec
Q 010516 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (508)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (508)
+.++.++|+||++|++.+.+.+.+++++++++|+.+|++...|++||++||+|+||.+++..++.+.++..|++++++++
T Consensus 4 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~~~~~~~~~~~le~~G~~~na~t~ 83 (475)
T 1hr6_A 4 DNFKLSSLANGLKVATSNTPGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTEHVEGRAMAETLELLGGNYQCTSS 83 (475)
T ss_dssp TCCEEEECTTSCEEEEESCCCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBTTBCHHHHHHHHHHTTSCEEEEEC
T ss_pred CCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence 57899999999999998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCCCCCCCCh
Q 010516 157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPE 235 (508)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~~ 235 (508)
++++.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.+|+++..++|...+.+.++..+|++ +|+++.+|+.
T Consensus 84 ~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~ 163 (475)
T 1hr6_A 84 RENLMYQASVFNQDVGKMLQLMSETVRFPKITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR 163 (475)
T ss_dssp SSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred cCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 999999999999999999999999999999999999999999999999988999999999999999987 9999999999
Q ss_pred HHhccCCHHHHHHHHHhhcCCCCeEEEEcCCCHHHHHHHHHhhhcCCCCCCCC-CCCCCccCCCeeEee------CCCCc
Q 010516 236 SAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPR-EEPKSVYTGGDYRCQ------ADSGL 308 (508)
Q Consensus 236 ~~l~~l~~~~l~~f~~~~~~~~~~~l~i~Gv~~e~l~~~~~~~~~~lp~~~~~-~~~~~~~~~~~~~~~------~~~~~ 308 (508)
+.|++++.++|++||+++|+|+||+++++|+++++++++++++|+.||....+ ..+.+.+.++..++. .+.++
T Consensus 164 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~G~d~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (475)
T 1hr6_A 164 GLIPSISKYYLLDYRNKFYTPENTVAAFVGVPHEKALELTGKYLGDWQSTHPPITKKVAQYTGGESCIPPAPVFGNLPEL 243 (475)
T ss_dssp GGGGGCCHHHHHHHHHHHCCGGGEEEEEESSCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEECCCCCCSSSCCC
T ss_pred HHHhhcCHHHHHHHHHHhCCcccEEEEEeCCCHHHHHHHHHHHhccCCCCCCCCCCCCCCCcCCeEEEecccccCCCccc
Confidence 99999999999999999999999999999999999999999999999865443 222334445444443 56788
Q ss_pred eEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcceEEEEEE
Q 010516 309 THFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT 388 (508)
Q Consensus 309 ~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~i~~~ 388 (508)
+++.++|++++ | ++++.+++.|++.||+++++||+|||||||+++||++||++.|++|+++++...+.+.|.|+|+++
T Consensus 244 ~~v~~~~~~~~-~-~~~d~~~l~vl~~iLg~~~~f~~gg~g~~~~s~L~~~lr~~~gl~y~v~s~~~~~~~~g~~~i~~~ 321 (475)
T 1hr6_A 244 FHIQIGFEGLP-I-DHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVENCVAFNHSYSDSGIFGISLS 321 (475)
T ss_dssp EEEEEEEECCC-T-TCTTHHHHHHHHHHHCEEESSCCSSTTSCTTSHHHHHTTTTCSSEEEEEEEEEECSSCEEEEEEEE
T ss_pred eEEEEEEecCC-C-CCccHHHHHHHHHHhCCCcccccCCCCCCcCCHHHHHHHHhcCCeeEEEEeccccCCCceEEEEEE
Confidence 99999999776 4 678999999999999999999999999999999999999999999999999887778899999999
Q ss_pred eCcchHHHHHHHHHHHHHHhhCC--CCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCCHHHHHHHHhc
Q 010516 389 TGSDFVSKAIDLAARELISVATP--GEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEG 466 (508)
Q Consensus 389 ~~p~~~~~~~~~~~~~l~~l~~~--~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~ 466 (508)
++|+++.++++.+.+++.++.+. ++++++||+++|+.++.++....+++..+++.++++++.+|.+.+.+++.+.|++
T Consensus 322 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~t~~El~~ak~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~ 401 (475)
T 1hr6_A 322 CIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNLESKLVELEDMGRQVLMHGRKIPVNEMISKIED 401 (475)
T ss_dssp ECGGGHHHHHHHHHHHHHTTTTCTTSCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSCCCCHHHHHHHHHT
T ss_pred eCHHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHc
Confidence 99999999999999999998751 2599999999999999999999999999999999987667877778889999999
Q ss_pred CCHHHHHHHHHHHhcC----------CceEEEEcCCCCCCCHHHHHhHhh
Q 010516 467 VTAKDIASVAQKLLSS----------PLTMASYGDVINVPSYDAVSSKFK 506 (508)
Q Consensus 467 vT~~Di~~~a~~~l~~----------~~~~~~~G~~~~~p~~~~~~~~~~ 506 (508)
||++||++++++++.. +++++++|+...+|+++++.+.+.
T Consensus 402 vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~ 451 (475)
T 1hr6_A 402 LKPDDISRVAEMIFTGNVNNAGNGKGRATVVMQGDRGSFGDVENVLKAYG 451 (475)
T ss_dssp CCHHHHHHHHHHHHTTCCCCTTCCCCCCEEEEESCGGGGCCHHHHHHHTT
T ss_pred CCHHHHHHHHHHHhhhccccccccCCCcEEEEECCcccCcCHHHHHHHhc
Confidence 9999999999999974 789999999989999999988775
No 2
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=100.00 E-value=1.6e-58 Score=478.23 Aligned_cols=427 Identities=29% Similarity=0.456 Sum_probs=386.8
Q ss_pred CCCceEEEEcCCCcEEEEeeCCCC-eEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeEE
Q 010516 75 EPGKTKISTLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQA 153 (508)
Q Consensus 75 ~~~~~~~~~L~NGl~v~~~~~~~~-~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~ 153 (508)
..+.++.++|+||++|++.+++.+ .+++.+++++|+..|++...|++|+++||+|+||++++..++.+.++.+|+++++
T Consensus 3 ~~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e~~~~~G~ah~le~~~~~Gt~~~~~~~l~~~l~~~g~~~na 82 (443)
T 1hr6_B 3 QIPGTRTSKLPNGLTIATEYIPNTSSATVGIFVDAGSRAENVKNNGTAHFLEHLAFKGTQNRPQQGIELEIENIGSHLNA 82 (443)
T ss_dssp --CCCEEEECTTSCEEEEEECSSCSEEEEEEEEECSGGGCCTTTTTHHHHHHHHTTSBBSSCBHHHHHHHHHHTTCEEEE
T ss_pred CCCCceEEECCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhhcCCCCCCHHHHHHHHHHcCCeEEE
Confidence 346789999999999999888765 9999999999999999999999999999999999999999999999999999999
Q ss_pred eecceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCCCCCC
Q 010516 154 SASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLL 232 (508)
Q Consensus 154 ~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~ 232 (508)
+++.+++.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.++++...++|...+.+.++..+|++ +|+++..
T Consensus 83 ~t~~~~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (443)
T 1hr6_B 83 YTSRENTVYYAKSLQEDIPKAVDILSDILTKSVLDNSAIERERDVIIRESEEVDKMYDEVVFDHLHEITYKDQPLGRTIL 162 (443)
T ss_dssp EECSSEEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSS
T ss_pred EECCCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhCChHHHHHHHHHHHhcCCCCCCCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999977 9999989
Q ss_pred CChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCCCCCCCCCC------CCccCCCeeEe-eC
Q 010516 233 APESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP------KSVYTGGDYRC-QA 304 (508)
Q Consensus 233 ~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp~~~~~~~~------~~~~~~~~~~~-~~ 304 (508)
|+.+.|++++.++|++||+++|+|+||+++++| +++++++++++++|+.||....+... .+.+.+....+ ..
T Consensus 163 g~~~~i~~~~~~~l~~f~~~~y~~~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (443)
T 1hr6_B 163 GPIKNIKSITRTDLKDYITKNYKGDRMVLAGAGAVDHEKLVQYAQKYFGHVPKSESPVPLGSPRGPLPVFCRGERFIKEN 242 (443)
T ss_dssp CCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCCCSSCCCTTSCCSSCCCCCCEEEEEECT
T ss_pred CCHHHHhhCCHHHHHHHHHhcCcCCCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCcccccCCCCCCCCCeEEeccC
Confidence 999999999999999999999999999999999 99999999999999999865433211 22333334333 44
Q ss_pred CCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcceEE
Q 010516 305 DSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 384 (508)
Q Consensus 305 ~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~ 384 (508)
+.+++++.++|+.+. | ++++.+++.|++.+|+++. ...|+|+|+.+|||+.||++.|++|+++++...+.+.|.|.
T Consensus 243 ~~~~~~v~~~~~~~~-~-~~~~~~~l~vl~~iLg~~~--r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~ 318 (443)
T 1hr6_B 243 TLPTTHIAIALEGVS-W-SAPDYFVALATQAIVGNWD--RAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWG 318 (443)
T ss_dssp TCSEEEEEEEEECCC-T-TCTTHHHHHHHHHHHCEEE--TTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEE
T ss_pred CccceEEEEEEecCC-C-CCccHHHHHHHHHHhCCCc--ccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEE
Confidence 578999999999986 4 7789999999999998743 24567889999999999999999999999887777889999
Q ss_pred EEEEeC--cchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCCHHHHHH
Q 010516 385 IQGTTG--SDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLK 462 (508)
Q Consensus 385 i~~~~~--p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~ 462 (508)
+++.++ |++..++++.+.++++++.+ ++++++||+++|+.++.++....+++..++..+..+++.+|.+.+.+++.+
T Consensus 319 i~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 397 (443)
T 1hr6_B 319 MYIVTDSNEHNVRLIVNEILKEWKRIKS-GKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSPEEVFE 397 (443)
T ss_dssp EEEEEETTTCCHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCCHHHHHH
T ss_pred EEEEecCChhHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCCHHHHHH
Confidence 999999 99999999999999999998 789999999999999999999999999999999887755777777888999
Q ss_pred HHhcCCHHHHHHHHHHHhc-CCceEEEEcCCCCCCCHHHHHhHhh
Q 010516 463 TVEGVTAKDIASVAQKLLS-SPLTMASYGDVINVPSYDAVSSKFK 506 (508)
Q Consensus 463 ~i~~vT~~Di~~~a~~~l~-~~~~~~~~G~~~~~p~~~~~~~~~~ 506 (508)
.|++||++||++++++|+. ++.+++++||...+|+++++...+.
T Consensus 398 ~i~~vt~~dv~~~a~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~~ 442 (443)
T 1hr6_B 398 QVDKITKDDIIMWANYRLQNKPVSMVALGNTSTVPNVSYIEEKLN 442 (443)
T ss_dssp HHHTCCHHHHHHHHHHHSSSCCEEEEEEECGGGCCCHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHhccCCcEEEEECCcccCccHHHHHHHhc
Confidence 9999999999999999998 8899999999999999999988764
No 3
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=100.00 E-value=1.2e-58 Score=475.96 Aligned_cols=406 Identities=25% Similarity=0.390 Sum_probs=375.1
Q ss_pred eEEEEcCCCcEEEEeeCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeEEeecc
Q 010516 79 TKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 157 (508)
Q Consensus 79 ~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 157 (508)
++.++|+||++|++.+.+ .+.+++.+++++|+.+|++...|++||++||+|+||.+++..++.+.++..|++++++++.
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~leh~lf~gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (421)
T 3hdi_A 2 INTMTLDNGVRIITEKMSTVRSVSIGIWVGTGSRYESAEENGISHFLEHMFFKGTNTRSAQEIAEFFDSIGGQVNAFTSK 81 (421)
T ss_dssp CEEEECTTSCEEEEEECTTCSEEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSBBSSSBHHHHHHHHHTTTSCEEEEECS
T ss_pred ceEEEcCCCCEEEEEECCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHhCCceeeeecc
Confidence 578999999999998776 4799999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCCCCCCCChH
Q 010516 158 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPES 236 (508)
Q Consensus 158 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~~~ 236 (508)
+++.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.+|++...++|...+.+.++..+|++ +++++..|+.+
T Consensus 82 d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 161 (421)
T 3hdi_A 82 EYTCYYAKVLDDHAGQAIDTLSDMFFHSTFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILGTVE 161 (421)
T ss_dssp SCEEEEEEEEGGGHHHHHHHHHHHHHSBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTCCHH
T ss_pred ceEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 99999999999
Q ss_pred HhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCCCCCCCCC-CCCccCCCeeEeeCCCCceEEEEE
Q 010516 237 AINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE-PKSVYTGGDYRCQADSGLTHFVLA 314 (508)
Q Consensus 237 ~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~ 314 (508)
.|++++.++|++||+++|+|+||+++++| ++ ++++++++++|+.||....+.. ..|.+.+.......+.+++++.++
T Consensus 162 ~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~-~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~v~~~ 240 (421)
T 3hdi_A 162 TLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH-DELIDKIKETFSQVKPTTYNYQGEKPMFLPNRIVRKKETEQAHLCLG 240 (421)
T ss_dssp HHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC-HHHHHHHHHHTTSSCCCCCCCCCCCCCCCCCEEEEECCCSEEEEEEE
T ss_pred HHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC-HHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEecCCCCceEEEEE
Confidence 99999999999999999999999999999 99 9999999999999987654432 223334444445677889999999
Q ss_pred eecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcceEEEEEEeCcchH
Q 010516 315 FELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFV 394 (508)
Q Consensus 315 ~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~i~~~~~p~~~ 394 (508)
|+.+. .++++.+++.|++.||+|+ +.+|||++||++.|++|+++++...+.+.|.|.+++.++|++.
T Consensus 241 ~~~~~--~~~~d~~~l~vl~~iLgg~-----------~~srL~~~lRe~~glay~~~s~~~~~~~~g~~~i~~~~~~~~~ 307 (421)
T 3hdi_A 241 YPGLP--IGDKDVYALVLLNNVLGGS-----------MSSRLFQDIREKRGLCYSVFSYHSSFRDSGMLTIYAGTGHDQL 307 (421)
T ss_dssp EECCC--TTCTTHHHHHHHHHHHTSS-----------SSSHHHHHHTTTTCCCSCEEEEEEECSSCEEEEEEEEEEGGGH
T ss_pred EecCC--CCCchHHHHHHHHHHhCCC-----------cccHHHHHHHHhcCCEEEEEEeecccCCCceEEEEEEeCHHHH
Confidence 99886 4779999999999999976 4599999999999999999998887888999999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCHHHHHH
Q 010516 395 SKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIAS 474 (508)
Q Consensus 395 ~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vT~~Di~~ 474 (508)
+++++.+.++++++++ ++++++||+++|+.++.++...++++..++..++...+..+...+.+++.+.|++||++||++
T Consensus 308 ~~~~~~i~~~l~~l~~-~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~ 386 (421)
T 3hdi_A 308 DDLVYSIQETTSALAE-KGLTEKELENGKEQLKGSLMLSLESTNSRMSRNGKNELLLKKHRSLDEMIEQINAVQKQDVSR 386 (421)
T ss_dssp HHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHcCCHHHHHH
Confidence 9999999999999998 789999999999999999999999999999999887776777777899999999999999999
Q ss_pred HHHHHhcCCceEEEEcCCCCCCCHH
Q 010516 475 VAQKLLSSPLTMASYGDVINVPSYD 499 (508)
Q Consensus 475 ~a~~~l~~~~~~~~~G~~~~~p~~~ 499 (508)
++++|+.++.+++++||...+|++.
T Consensus 387 ~a~~~~~~~~~~~vvgp~~~ip~~~ 411 (421)
T 3hdi_A 387 LAKILLSASPSISLINANGELPKAL 411 (421)
T ss_dssp HHHHHTTSCCEEEEEESSCSCCSCS
T ss_pred HHHHHcccCcEEEEECchhcCcchh
Confidence 9999997788999999999999763
No 4
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=100.00 E-value=1.9e-58 Score=472.17 Aligned_cols=398 Identities=19% Similarity=0.233 Sum_probs=366.7
Q ss_pred eEEEEcCCCcEEEEeeCCC-CeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeEEeecc
Q 010516 79 TKISTLPNGVKIASETSVS-PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASR 157 (508)
Q Consensus 79 ~~~~~L~NGl~v~~~~~~~-~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~ 157 (508)
++.++|+||++|++.+++. +.+.+.+++++|+.+|++...|++|+++||+|+||.+++..++.+.++..|+.++++++.
T Consensus 2 ~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~G~ah~lehmlf~Gt~~~~~~~~~~~l~~~G~~~na~t~~ 81 (406)
T 3eoq_A 2 FREAELRNGLRVIAEVVPGARSVALGYFVKTGARDETKEESGVSHFLEHMVFKGPEDMDALAVNRAFDRMGAQYNAFTSE 81 (406)
T ss_dssp EEEEECTTSCEEEEEECTTCSCEEEEEEESCSGGGSCGGGTTHHHHHHHHHTTCCTTCCHHHHHHHHHHTTCEEEEEECS
T ss_pred ceeEEcCCCCEEEEEECCCCCeEEEEEEEccccCCCCCCCCCHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCccceecC
Confidence 5789999999999987775 799999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCCCCCCCChH
Q 010516 158 EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPES 236 (508)
Q Consensus 158 ~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~~~ 236 (508)
+++.|++++++++++.+|+++.+++ +|.|++++|+++|..+.+|++...++|...+.+.++..+|++ ||+++..|+.+
T Consensus 82 d~t~y~~~~~~~~l~~~l~ll~d~~-~p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~~~ 160 (406)
T 3eoq_A 82 EATVYYGAVLPEFAYDLLGLFAKLL-RPALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGTRE 160 (406)
T ss_dssp SCEEEEEEECGGGHHHHHHHHHHHT-SCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCCHH
T ss_pred CeEEEEEEecHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCCHH
Confidence 9999999999999999999999999 999999999999999999999999999999999999999987 99999999999
Q ss_pred HhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCCCCCCCCCCCC-ccCCCeeEeeCCC-CceEEEE
Q 010516 237 AINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPKS-VYTGGDYRCQADS-GLTHFVL 313 (508)
Q Consensus 237 ~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp~~~~~~~~~~-~~~~~~~~~~~~~-~~~~v~~ 313 (508)
.|++++.++|++||+++|+|+||+++++| ++++++.++++++|+.||..+.+....+ ...++...+..+. +++++.+
T Consensus 161 ~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~ 240 (406)
T 3eoq_A 161 SITALTREGMAAYHRRRYLPKNMVLAATGRVDFDRLLAEAERLTEAWPEGEAERAYPPLTPAFGVEERPYEKARALYLVA 240 (406)
T ss_dssp HHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCCCCCCCCCCCCCEEEEEECTTCSSEEEEE
T ss_pred HHhhCCHHHHHHHHHHhCCccCEEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEecCCccceEEEE
Confidence 99999999999999999999999999999 9999999999999999986543322111 2233344455566 8999999
Q ss_pred EeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcceEEEEEEeCcch
Q 010516 314 AFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDF 393 (508)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~i~~~~~p~~ 393 (508)
+|+++. .++++.+++.|++.||||+ +++|||++||+ .|++|+++++...+.+.|.|.+++.++|++
T Consensus 241 ~~~~~~--~~~~d~~~l~vl~~iLgg~-----------~~srL~~~lre-~gl~y~~~s~~~~~~~~g~~~i~~~~~~~~ 306 (406)
T 3eoq_A 241 LFPGVA--YQEEARFPGQVLAHLLGEE-----------GSGRLHFALVD-KGLAEVASFGLEEADRAGTFHAYVQADPAR 306 (406)
T ss_dssp EEECCC--TTCTTHHHHHHHHHHHHCT-----------TTSHHHHHTTT-TTSEEEEEEEEEECSSCEEEEEEEEECGGG
T ss_pred EecCCC--CCCchHHHHHHHHHHhCCC-----------cchHHHHHHHH-cCCeeEEEEEecccCCceEEEEEEEeCcch
Confidence 999987 4778999999999999986 45999999999 899999999988888899999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCHHHHH
Q 010516 394 VSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIA 473 (508)
Q Consensus 394 ~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vT~~Di~ 473 (508)
.+++++.+.++++++++ ++++++||+++|+.++.++....+++..++..++.+.+.++.+.+.+++.+.|++||++||+
T Consensus 307 ~~~~~~~i~~~l~~l~~-~~~t~~el~~ak~~l~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~ 385 (406)
T 3eoq_A 307 KGEVLAVLQEELDRLGR-EGVGEEEVERAKTPLATGLVFAGETPMQRLFHLGMEYLYTGRYLSLEEVKARVQRVTSREVN 385 (406)
T ss_dssp HHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhCCHHHHH
Confidence 99999999999999998 78999999999999999999999999999999999888778888899999999999999999
Q ss_pred HHHHHHhc-CCceEEEEcCCC
Q 010516 474 SVAQKLLS-SPLTMASYGDVI 493 (508)
Q Consensus 474 ~~a~~~l~-~~~~~~~~G~~~ 493 (508)
+++++|+. ++. ++++||..
T Consensus 386 ~~a~~~l~~~~~-~~vvGp~~ 405 (406)
T 3eoq_A 386 ALLERGFLEKGL-YYLVLPHG 405 (406)
T ss_dssp HHHHTTTTTSCE-EEEEECCC
T ss_pred HHHHHhcCcccE-EEEECCCC
Confidence 99999999 666 99999864
No 5
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=100.00 E-value=2.6e-58 Score=477.09 Aligned_cols=423 Identities=27% Similarity=0.470 Sum_probs=384.9
Q ss_pred CceEEEEcCCCcEEEEeeCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeEEeec
Q 010516 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS 156 (508)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~ 156 (508)
+.++..+|+||++|++.+.+.+.+++.+++++|+..|++...|++|+++||+|+||.+++..++.+.++..|++++++++
T Consensus 12 ~~~~~~~L~NGl~v~~~~~~~~~~~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~l~~~G~~~na~t~ 91 (446)
T 1pp9_A 12 PETQVSQLDNGLRVASEQSSQPTCTVGVWIDAGSRYESEKNNGAGYFVEHLAFKGTKNRPGNALEKEVESMGAHLNAYST 91 (446)
T ss_dssp CCCEEEECTTCCEEEEEECSCSEEEEEEEESCSGGGCCTTTTTHHHHHHHHTTSCBSSSTTTHHHHHHHHTTCEEEEEEC
T ss_pred cCceEEECCCCCEEEEEeCCCCEEEEEEEEccccCCCCCCCCcHHHHHHHHhcCCCCCCCHHHHHHHHHHcCCEEEEEEc
Confidence 57789999999999998887889999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCCCCCCCCh
Q 010516 157 REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPE 235 (508)
Q Consensus 157 ~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~~ 235 (508)
.+++.|++++++++++.+|+++.+++.+|.|++++|+++|+.+.+|++...++|...+.+.++..+|++ +|+++..|+.
T Consensus 92 ~d~t~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 171 (446)
T 1pp9_A 92 REHTAYYIKALSKDLPKAVELLADIVQNCSLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVEGPS 171 (446)
T ss_dssp SSCEEEEEEEEGGGHHHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCH
T ss_pred CCeEEEEEEecHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 999999999999999999999999999999999999999999999999999999999999999999977 9999999999
Q ss_pred HHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCCCCCCCCC--C--CCccCCCeeE-eeCCCCce
Q 010516 236 SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--P--KSVYTGGDYR-CQADSGLT 309 (508)
Q Consensus 236 ~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp~~~~~~~--~--~~~~~~~~~~-~~~~~~~~ 309 (508)
+.|++++.++|++||+++|+|+||+++++| ++++++.++++++|+.||....+.. . .+.+.+.... ...+.+++
T Consensus 172 ~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (446)
T 1pp9_A 172 ENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLEHRQLLDLAQKHFSGLSGTYDEDAVPTLSPCRFTGSQICHREDGLPLA 251 (446)
T ss_dssp HHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTSCSCCCSSCCCCCCCCCCCCEEEEEEETTSSSE
T ss_pred HHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCCHHHHHHHHHHHhccCCCCCCCCccccCCCCCCCCceEEEecCCccce
Confidence 999999999999999999999999999999 9999999999999999986544321 1 2233344443 34557899
Q ss_pred EEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcceEEEEEEe
Q 010516 310 HFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTT 389 (508)
Q Consensus 310 ~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~i~~~~ 389 (508)
++.++|+.+. .++++..++.|++.|||++.+ +.| +|+|+++|||++||+ .|++|+++++...+.+.|.|.+++.+
T Consensus 252 ~v~~~~~~~~--~~~~d~~al~vl~~iLg~~~~-~~~-~g~~~~srL~~~lr~-~glay~~~s~~~~~~~~g~~~i~~~~ 326 (446)
T 1pp9_A 252 HVAIAVEGPG--WAHPDNVALQVANAIIGHYDC-TYG-GGAHLSSPLASIAAT-NKLCQSFQTFNICYADTGLLGAHFVC 326 (446)
T ss_dssp EEEEEEEECC--TTCTHHHHHHHHHHHHCEEET-TCS-CGGGCSSHHHHHHHH-HTCCSEEEEEEEECSSCEEEEEEEEE
T ss_pred EEEEEEecCC--CCCccHHHHHHHHHHhCCCcc-cCC-CCCCCCCHHHHHHHh-cCCeEEEEEecccCCCCeEEEEEEEE
Confidence 9999999987 477899999999999987544 444 789999999999995 57899999988777788999999999
Q ss_pred CcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCH
Q 010516 390 GSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTA 469 (508)
Q Consensus 390 ~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vT~ 469 (508)
+|++..++++.+.++++++.+ + ++++||+++|+.++.++....+++..+++.++++++.+|.+.+.+++.+.|++||+
T Consensus 327 ~~~~~~~~~~~i~~~l~~l~~-~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vt~ 404 (446)
T 1pp9_A 327 DHMSIDDMMFVLQGQWMRLCT-S-ATESEVLRGKNLLRNALVSHLDGTTPVCEDIGRSLLTYGRRIPLAEWESRIAEVDA 404 (446)
T ss_dssp CTTSHHHHHHHHHHHHHHHHH-H-CCHHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHTSSCCCHHHHHHHHHTCCH
T ss_pred CHHHHHHHHHHHHHHHHHHhc-c-CCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHcCCH
Confidence 999999999999999999988 6 99999999999999999999999999999988887667887778889999999999
Q ss_pred HHHHHHHHHHhc-CCceEEEEcCCCCCCCHHHHHhHhh
Q 010516 470 KDIASVAQKLLS-SPLTMASYGDVINVPSYDAVSSKFK 506 (508)
Q Consensus 470 ~Di~~~a~~~l~-~~~~~~~~G~~~~~p~~~~~~~~~~ 506 (508)
+||++++++|+. ++.+++++||...+|.++++.+.+.
T Consensus 405 edv~~~a~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 442 (446)
T 1pp9_A 405 RVVREVCSKYFYDQCPAVAGFGPIEQLPDYNRIRSGMF 442 (446)
T ss_dssp HHHHHHHHHHTTTCCCEEEEEESCTTSCCHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCcEEEEECCcccCcCHHHHHhhHH
Confidence 999999999998 7899999999999999999988764
No 6
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=100.00 E-value=4.5e-57 Score=466.58 Aligned_cols=420 Identities=30% Similarity=0.504 Sum_probs=383.3
Q ss_pred CCCceEEEEcCCCcEEEEeeCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeEEe
Q 010516 75 EPGKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 154 (508)
Q Consensus 75 ~~~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 154 (508)
..+.++.++|+||++|++.++..|.+++.+++++|+..|++...|++|+++||+++|+++++..++.+.++..|++++++
T Consensus 20 ~~~~~~~~~L~nGl~v~~~~~~~~~~~~~~~~~~Gs~~e~~~~~g~a~lle~~~~~gt~~~~~~~~~~~l~~~G~~~na~ 99 (439)
T 1pp9_B 20 HPQDLEFTRLPNGLVIASLENYAPASRIGLFIKAGSRYENSNNLGTSHLLRLASSLTTKGASSFKITRGIEAVGGKLSVT 99 (439)
T ss_dssp -CCCCEEEECTTSCEEEEECCCCSEEEEEEEESCSGGGCCTTSTTHHHHHHHTTTSCBSSSCHHHHHHHHHHTTCEEEEE
T ss_pred cCCCceEEECCCCcEEEEEeCCCceEEEEEEEeccccCCCCCcCcHHHHHHHhhcCCCCcCCHHHHHHHHHHhCCeEEEE
Confidence 35788999999999999877777899999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCC
Q 010516 155 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAP 234 (508)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~ 234 (508)
++.+++.|++++++++++.+|+++.+.+.+|.|++++|+++|+.+.++++...++|...+.+.++..+|+++++++..|+
T Consensus 100 t~~~~t~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~ 179 (439)
T 1pp9_B 100 STRENMAYTVECLRDDVDILMEFLLNVTTAPEFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAAYRNALANSLYCP 179 (439)
T ss_dssp ECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHBSSGGGSCSSCC
T ss_pred ecceEEEEEEEeehhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHhcCCCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999976788888999
Q ss_pred hHHhccCCHHHHHHHHHhhcCCCCeEEEEcCCCHHHHHHHHHhhhcCCCCCCCCCCCCCccCCCeeEeeCCCCceEEEEE
Q 010516 235 ESAINRLNSTLLEEFVAENYTGPRMVLAASGVEHDQLVSVAEPLLSDLPSIHPREEPKSVYTGGDYRCQADSGLTHFVLA 314 (508)
Q Consensus 235 ~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~Gv~~e~l~~~~~~~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 314 (508)
.+.|++++.++|++||+++|+|+|++++++|-+++++.++++++|+ ||....+....+.+.++...+..+.+++++.++
T Consensus 180 ~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 258 (439)
T 1pp9_B 180 DYRIGKVTPVELHDYVQNHFTSARMALIGLGVSHPVLKQVAEQFLN-IRGGLGLSGAKAKYHGGEIREQNGDSLVHAALV 258 (439)
T ss_dssp GGGTTTCCHHHHHHHHHHHCSGGGEEEEEESSCHHHHHHHHHHHCC-CCCCC-CCCCCCCBCCEEEEEECCCSEEEEEEE
T ss_pred HHHHhhcCHHHHHHHHHHhCCCCceEEEEeCCCHHHHHHHHHHHhC-CCCCCCCCCCCCCCcCCeEEecCCccceEEEEE
Confidence 9999999999999999999999999999999888999999999998 886543322223334444445566788999999
Q ss_pred eecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcceEEEEEEeCcchH
Q 010516 315 FELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFV 394 (508)
Q Consensus 315 ~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~i~~~~~p~~~ 394 (508)
|+.+. .++++.+++.|++.||+++++|++|| ||.+|||++||++.|++|+++++...+.+.|.|.+++.++|+++
T Consensus 259 ~~~~~--~~~~~~~~~~ll~~iLg~~~~~~~~~---g~~s~L~~~lRe~~gl~Y~~~~~~~~~~~~g~~~i~~~~~~~~~ 333 (439)
T 1pp9_B 259 AESAA--IGSAEANAFSVLQHVLGAGPHVKRGS---NATSSLYQAVAKGVHQPFDVSAFNASYSDSGLFGFYTISQAASA 333 (439)
T ss_dssp EECCC--TTSHHHHHHHHHHHHHCCSCSBTTCC---CTTCHHHHHHHHHCCSCEEEEEEEEEETTEEEEEEEEEEEGGGH
T ss_pred ecCCC--CCchHHHHHHHHHHHhCCCcccCCCC---CccCHHHHHHHHhcCCceEEEEeeccccccceEEEEEEeCHHHH
Confidence 99887 47789999999999999999999888 88999999999999999999998876778899999999999999
Q ss_pred HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCHHHHHH
Q 010516 395 SKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIAS 474 (508)
Q Consensus 395 ~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vT~~Di~~ 474 (508)
.++++.+.+++.++++ ++++++||+++|+.++.++....+++..++..++..++.++.+.+.+++.+.|++||++||++
T Consensus 334 ~~~~~~~~~~l~~l~~-~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vt~~dv~~ 412 (439)
T 1pp9_B 334 GDVIKAAYNQVKTIAQ-GNLSNPDVQAAKNKLKAGYLMSVESSEGFLDEVGSQALAAGSYTPPSTVLQQIDAVADADVIN 412 (439)
T ss_dssp HHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHSSCCCHHHHHHHHHTCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCHHHHHH
Confidence 9999999999999998 679999999999999999999999999999999988876677777899999999999999999
Q ss_pred HHHHHhcCCceEEEEcCCCCCCCHHHH
Q 010516 475 VAQKLLSSPLTMASYGDVINVPSYDAV 501 (508)
Q Consensus 475 ~a~~~l~~~~~~~~~G~~~~~p~~~~~ 501 (508)
++++++.++.+++++|+...+|.++++
T Consensus 413 ~a~~~~~~~~~~~v~g~~~~~~~~~~~ 439 (439)
T 1pp9_B 413 AAKKFVSGRKSMAASGNLGHTPFIDEL 439 (439)
T ss_dssp HHHHHHHSCEEEEEEECGGGCCCGGGC
T ss_pred HHHHHhcCCceEEEECCcccCCccccC
Confidence 999999888899999999999998753
No 7
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=100.00 E-value=7.2e-56 Score=458.61 Aligned_cols=415 Identities=21% Similarity=0.294 Sum_probs=364.8
Q ss_pred CCceEEEEcCCCcEEEEeeCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeEEe
Q 010516 76 PGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 154 (508)
Q Consensus 76 ~~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 154 (508)
.+.++.++|+||++|++.+++ .+.+.+.+++++|+..|++...|++|+++||+|+||++++..++.+.++..|+.++++
T Consensus 4 ~~~~~~~~L~NGl~v~~~~~~~~~~v~~~~~~~~Gs~~e~~~~~Glah~lehmlf~Gt~~~~~~~l~~~l~~~g~~~na~ 83 (445)
T 3ami_A 4 AASTFETTLPNGLKVVVREDHRAPTLVHMVWYRVGSMDETTGTTGVAHALEHMMFKGTKDVGPGEFSKRVAAMGGRDNAF 83 (445)
T ss_dssp GGGEEEEECTTSCEEEEEECTTSSEEEEEEEESCCGGGCCTTCTTHHHHHHHHTTSCBSSSCTTHHHHHHHHTTCEEEEE
T ss_pred CcCcEEEECCCCCEEEEEECCCCCeEEEEEEEeeccCCCCCCCccHHHHHHHhhcCCCCCCCHHHHHHHHHHhCCccccc
Confidence 367899999999999987765 5799999999999999999999999999999999999999999999999999999999
Q ss_pred ecceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHH-hhcCChHHHHHHHHHHHhcCC-CCCCCCC
Q 010516 155 ASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEIS-EVSNNPQSLLLEAIHSAGYSG-ALANPLL 232 (508)
Q Consensus 155 ~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~-~~~~~p~~~~~~~l~~~~~~~-~~~~~~~ 232 (508)
++.+++.|.+++++++++.+|+++.+++.+|.|++++|+++|..+.+|++ ...++|...+.+.++..+|++ ||+++..
T Consensus 84 t~~d~t~y~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~ 163 (445)
T 3ami_A 84 TTRDYTAYYQQVPSSRLSDVMGLEADRMANLVVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVI 163 (445)
T ss_dssp ECSSCEEEEEEEEGGGHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTT
T ss_pred cCCCeEEEEEECCHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999 678999999999999999977 9999999
Q ss_pred CChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCCCCCCCCCC---CCccCCCe-eEeeCCCC
Q 010516 233 APESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP---KSVYTGGD-YRCQADSG 307 (508)
Q Consensus 233 ~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp~~~~~~~~---~~~~~~~~-~~~~~~~~ 307 (508)
|+.+.|++++.++|++||+++|.|+||+++++| +++++++++++++|+.||....+... .+...+.. ..+..+.+
T Consensus 164 G~~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d~~~~~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (445)
T 3ami_A 164 GWMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVEHEAVFRLAEQTYGKLARVEAPARKQQGEPQQAGVRRVTVKAPAE 243 (445)
T ss_dssp CCHHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCCHHHHHHHHHHTGGGSCCCCCCCCCCCCCCCCCSCEEEEEEEECS
T ss_pred CCHHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCCCceEEEEecCCC
Confidence 999999999999999999999999999999999 99999999999999999865433221 12222322 33444578
Q ss_pred ceEEEEEeecCCC--CCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecC-CCC-cceE
Q 010516 308 LTHFVLAFELPGG--WHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNI-YNH-SGMF 383 (508)
Q Consensus 308 ~~~v~~~~~~~~~--~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~-~~~-~g~~ 383 (508)
++++.++|+++.. |.+.++..++.+++.||+++ +++||++.||++.|++|+++++... ..+ .|.|
T Consensus 244 ~~~v~l~~~~~~~~~~~~~~~~~~~~vl~~iLg~~-----------~~srL~~~lre~~gl~y~v~~~~~~~~~~~~g~~ 312 (445)
T 3ami_A 244 LPYLALAWHVPAIVDLDKSRDAYALEILAAVLDGY-----------DGARMTRQLVRGNKHAVSAGAGYDSLSRGQQGLF 312 (445)
T ss_dssp SCEEEEEEEECCCSSTTCCHHHHHHHHHHHHHHSS-----------TTCHHHHHTTTTSCCEEEEEEECCCCCSSCCEEE
T ss_pred ccEEEEEEEcCCcccccCChhHHHHHHHHHHHcCC-----------cchHHHHHHhhcCCcEEEEEeeccccccCCCCeE
Confidence 8899999998752 43378899999999999976 4499999999999999999998764 456 8999
Q ss_pred EEEEEeCcch-HHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCCHHHHHH
Q 010516 384 GIQGTTGSDF-VSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLK 462 (508)
Q Consensus 384 ~i~~~~~p~~-~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~ 462 (508)
.|++.+.|+. .+++++.+.++++++.+ ++++++||+++|+.++.++....+++..++..+..+++.++...+.+++.+
T Consensus 313 ~i~~~~~~~~~~~~~~~~i~~~l~~l~~-~g~t~~el~~ak~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 391 (445)
T 3ami_A 313 ILEGVPSKGVTIAQLETDLRAQVRDIAA-KGVTEAELSRVKSQMVAGKVYEQDSLMGQATQIGGLEVLGLSWRDDDRFYQ 391 (445)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHTTTCCTTHHHHHHH
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHcCCChHHHHHHHH
Confidence 9999999884 89999999999999998 679999999999999999999999999999999988874444455789999
Q ss_pred HHhcCCHHHHHHHHHHHhc-CCceEEEEcCCCCCCCHHHHH
Q 010516 463 TVEGVTAKDIASVAQKLLS-SPLTMASYGDVINVPSYDAVS 502 (508)
Q Consensus 463 ~i~~vT~~Di~~~a~~~l~-~~~~~~~~G~~~~~p~~~~~~ 502 (508)
.|++||++||++++++|+. ++.+++++||...+|...+=.
T Consensus 392 ~i~~vt~~dv~~~a~~~l~~~~~~~~~~~p~~~~~~~~~~~ 432 (445)
T 3ami_A 392 QLRSVTAAEVKAAAARLLTDDTLTVANLVPLPPDPKAQQNE 432 (445)
T ss_dssp HHHTCCHHHHHHHHHTTSCSTTEEEEEEEEECC--------
T ss_pred HHHcCCHHHHHHHHHHHcCcCCeEEEEEccCccCccccccC
Confidence 9999999999999999998 889999999988887765543
No 8
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=100.00 E-value=6.2e-55 Score=449.88 Aligned_cols=406 Identities=17% Similarity=0.195 Sum_probs=366.1
Q ss_pred CCceEEEEcCCCcEEEEeeCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeEEe
Q 010516 76 PGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQAS 154 (508)
Q Consensus 76 ~~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~ 154 (508)
.++++.++|+||++|++.+++ .|.+++.+++++|+..+ +...|++|+++||+++|+++++..++.+.++..|++++++
T Consensus 11 ~~~~~~~~L~NGl~v~~~~~~~~~~~~~~~~~~~Gs~~e-~~~~g~a~lle~ll~~gt~~~~~~~l~~~l~~~g~~~~a~ 89 (434)
T 3gwb_A 11 NLNVQTWSTAEGAKVLFVEARELPMFDLRLIFAAGSSQD-GNAPGVALLTNAMLNEGVAGKDVGAIAQGFEGLGADFGNG 89 (434)
T ss_dssp -CCCEEEECTTCCEEEEEECCSSSEEEEEEEESCSGGGC-TTSTTHHHHHHHHGGGEETTEEHHHHHHHHHTTTCEEEEE
T ss_pred CCCCEEEEcCCCeEEEEEECCCCCEEEEEEEEecccccC-CcchhHHHHHHHHHhcCcccCCHHHHHHHHHHhCCEEEee
Confidence 367899999999999997776 48999999999999999 8899999999999999999999999999999999999999
Q ss_pred ecceeEEEEEEcccCC--hHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCCCCC
Q 010516 155 ASREQMGYSFDALKTY--VPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPL 231 (508)
Q Consensus 155 ~~~~~~~~~~~~~~~~--l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~ 231 (508)
++.+++.|++++++++ ++.+|+++.+++.+|.|++++|+++|+.+.+++++..++|...+.+.++..+|++ +++++.
T Consensus 90 t~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 169 (434)
T 3gwb_A 90 AYKDMAVASLRSLSAVDKREPALKLFAEVVGKPTFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHAS 169 (434)
T ss_dssp ECSSCEEEEEEEECSHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCT
T ss_pred ecCCeEEEEEEecCccccHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCC
Confidence 9999999999999998 9999999999999999999999999999999999999999999999999999987 999999
Q ss_pred CCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCCCCCCCCCCC-C-ccCCCeeEeeCCCCc
Q 010516 232 LAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK-S-VYTGGDYRCQADSGL 308 (508)
Q Consensus 232 ~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp~~~~~~~~~-~-~~~~~~~~~~~~~~~ 308 (508)
.|+.+.|++++.++|++||+++|+|+|++++++| ++++++.++++++|+.||..+.+..+. + ...++...+..+..+
T Consensus 170 ~G~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (434)
T 3gwb_A 170 DGDAKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLSRSDAEAIAAQVSAALPKGPALAKIEQPAEPKASIGHIEFPSSQ 249 (434)
T ss_dssp TCCTTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHHHHHHHSCCCCCCCCCCCCCCCCCEEEEEECCSSE
T ss_pred CCCHHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEEeCCCCc
Confidence 9999999999999999999999999999999999 999999999999999998764433221 2 222334445556689
Q ss_pred eEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcceEEEEEE
Q 010516 309 THFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGT 388 (508)
Q Consensus 309 ~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~i~~~ 388 (508)
+++.++|..+. .+.++.+++.|++.|||++ ||+++||++||++.|++|+++++...+.+.|.|.++++
T Consensus 250 ~~v~~~~~~~~--~~~~d~~~l~vl~~iLg~~----------~~~s~L~~~lRe~~gl~Y~v~~~~~~~~~~g~~~i~~~ 317 (434)
T 3gwb_A 250 TSLMLAQLGID--RDDPDYAAVSLGNQILGGG----------GFGTRLMSEVREKRGLTYGVYSGFTPMQARGPFMINLQ 317 (434)
T ss_dssp EEEEEEEECCB--TTCTTHHHHHHHHHHHHSS----------SSCSHHHHHHTTTTCCCSCEEEEECCBSSCCEEEEEEE
T ss_pred eeEEecCcCCC--CCCcchHHHHHHHHHhCCC----------cccchhHHHHHhhcCCcceeeeecccCCCceeEEEEEe
Confidence 99999999886 4778999999999999965 36699999999999999999999888888899999999
Q ss_pred eCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCC-HHHHHHHHhcC
Q 010516 389 TGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKP-VEHFLKTVEGV 467 (508)
Q Consensus 389 ~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~-~~~~~~~i~~v 467 (508)
++|++++++++.+.+++.++.+ ++++++||+++|+.++.++....+++..++..++.... +|.+.+ .+++.+.|++|
T Consensus 318 ~~~~~~~~~~~~i~~~l~~l~~-~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~v 395 (434)
T 3gwb_A 318 TRAEMSEGTLKLVQDVFAEYLK-NGPTQKELDDAKRELAGSFPLSTASNADIVGQLGAMGF-YNLPLSYLEDFMRQSQEL 395 (434)
T ss_dssp EEGGGHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHC---CCCCHHHHHHHHHHHHH-TTCCTTHHHHHHHHHHHC
T ss_pred cchhhHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHH-cCCCccHHHHHHHHHHhC
Confidence 9999999999999999999988 68999999999999999999999999999999998775 565544 78999999999
Q ss_pred CHHHHHHHHHHHhc-CCceEEEEcCCCCCC
Q 010516 468 TAKDIASVAQKLLS-SPLTMASYGDVINVP 496 (508)
Q Consensus 468 T~~Di~~~a~~~l~-~~~~~~~~G~~~~~p 496 (508)
|++||++++++|+. ++.+++++||...-|
T Consensus 396 t~~dv~~~a~~~l~~~~~~~~vvg~~~~~~ 425 (434)
T 3gwb_A 396 TVEQVKAAMNKHLNVDKMVIVSAGPTVAQK 425 (434)
T ss_dssp CHHHHHHHHHHHCCGGGCEEEEEECCCCCC
T ss_pred CHHHHHHHHHHhcChhhEEEEEEcCccccC
Confidence 99999999999999 899999999976543
No 9
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=100.00 E-value=3.7e-54 Score=443.62 Aligned_cols=412 Identities=19% Similarity=0.300 Sum_probs=368.3
Q ss_pred EEEEcCCCcEEEEeeCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeEEeecce
Q 010516 80 KISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASRE 158 (508)
Q Consensus 80 ~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~ 158 (508)
+.++|+||++|++.+++ .+.+.+.+++++|+..|+++..|++|+++||+++|+.+ +.++..|++++++++.+
T Consensus 2 ~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~gt~~-------~~~~~~G~~~na~t~~~ 74 (431)
T 3cx5_A 2 EVTQLSNGIVVATEHNPSAHTASVGVVFGSGAANENPYNNGVSNLWKNIFLSKENS-------AVAAKEGLALSSNISRD 74 (431)
T ss_dssp CCEEEESSSEEEEEECTTCSSEEEEEEESCCGGGSCTTTTTHHHHHHHHHTSHHHH-------HHHHHTTCEEEEEECSS
T ss_pred eEEECCCCCEEEEEECCCCCEEEEEEEEecCccCCCCCCcchHHHHHHHHhcCCCc-------ccHHHcCCeeeeeecCC
Confidence 45789999999998776 47999999999999999999999999999999998642 35788999999999999
Q ss_pred eEEEEEEcccCChHHHHHHHHHhhhCCC---CCHHHHHHHHHHHHHHHHhhcCCh-HHHHHHHHHHHhcCC-CCCCCCCC
Q 010516 159 QMGYSFDALKTYVPEMVELLIDCVRNPV---FLDWEVNEQLTKVKSEISEVSNNP-QSLLLEAIHSAGYSG-ALANPLLA 233 (508)
Q Consensus 159 ~~~~~~~~~~~~l~~~l~ll~~~~~~p~---f~~~~~~~~k~~~~~e~~~~~~~p-~~~~~~~l~~~~~~~-~~~~~~~~ 233 (508)
++.|++++++++++.+|+++.+++.+|. |++++|+++|+.+.+++++..++| ...+.+.++..+|++ +++++..|
T Consensus 75 ~t~~~~~~~~~~l~~~l~ll~~~~~~p~~~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g 154 (431)
T 3cx5_A 75 FQSYIVSSLPGSTDKSLDFLNQSFIQQKANLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRG 154 (431)
T ss_dssp CEEEEEEECSTTHHHHHHHHHHHHHTCSTTTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTC
T ss_pred eEEEEEEechhhHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCC
Confidence 9999999999999999999999999999 999999999999999999988999 999999999999977 99999899
Q ss_pred ChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCCCCCCCCCCC-CccCCCeeEe-eCCCCceE
Q 010516 234 PESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPK-SVYTGGDYRC-QADSGLTH 310 (508)
Q Consensus 234 ~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp~~~~~~~~~-~~~~~~~~~~-~~~~~~~~ 310 (508)
+.+.|++++.++|++||+++|.|+|++++++| +++++++++++++|+.||....+.... +.+.+..... ..+.++++
T Consensus 155 ~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (431)
T 3cx5_A 155 TLESLENLVVADLESFANNHFLNSNAVVVGTGNIKHEDLVNSIESKNLSLQTGTKPVLKKKAAFLGSEVRLRDDTLPKAW 234 (431)
T ss_dssp CHHHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCCHHHHHHHHTTSCCCSSCSCCCCCCCCCCCCCEEEEEECTTSSSEE
T ss_pred CHHHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCCHHHHHHHHHHHhCCCCCCCCCCCCCCCcccCceEEEcCCCCCceE
Confidence 99999999999999999999999999999999 999999999999888898654332211 2233333433 44568999
Q ss_pred EEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCC-cccHHHHHHHhhCCCeEEEEEeecCCCCcceEEEEEEe
Q 010516 311 FVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKG-MYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTT 389 (508)
Q Consensus 311 v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g-~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~i~~~~ 389 (508)
+.++|+.+. .++++..++.+++.||+++ ++||||+| |.++||+.||+ .|++|+++++...+.+.|.|++++.+
T Consensus 235 v~~~~~~~~--~~~~~~~~~~vl~~iL~~~---~~~~~~~~~~~s~L~~~lRe-~gl~y~v~~~~~~~~~~g~~~i~~~~ 308 (431)
T 3cx5_A 235 ISLAVEGEP--VNSPNYFVAKLAAQIFGSY---NAFEPASRLQGIKLLDNIQE-YQLCDNFNHFSLSYKDSGLWGFSTAT 308 (431)
T ss_dssp EEEEEECCC--TTCTTHHHHHHHHHHHCEE---ETTCTTGGGSSCTHHHHHHT-TTCCSEEEEEEEECSSCEEEEEEEEE
T ss_pred EEEEeecCC--CCCccHHHHHHHHHHcCCC---ccCCCCccccccHHHHHHHh-cCceeeEeEeecccCCCceEEEEEee
Confidence 999999887 4778999999999999964 56899996 78999999996 59999999988767778999999999
Q ss_pred Cc-chHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH--hccChHHHHHHHHHHHHHcCCCCCHHHHHHHHhc
Q 010516 390 GS-DFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM--NLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEG 466 (508)
Q Consensus 390 ~p-~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~--~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~ 466 (508)
+| ++..++++.+.+++.++.+ + ++++||+++|+.++.++.. ..+++..++..++.+++.+|.+.+.+++.+.|++
T Consensus 309 ~~~~~~~~~~~~~~~~l~~l~~-~-~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~ 386 (431)
T 3cx5_A 309 RNVTMIDDLIHFTLKQWNRLTI-S-VTDTEVERAKSLLKLQLGQLYESGNPVNDANLLGAEVLIKGSKLSLGEAFKKIDA 386 (431)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHH-T-CCHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHSSCCCHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHHHHHhc-C-CCHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhc
Confidence 99 9999999999999999987 4 9999999999999999999 9999999999999876556776678899999999
Q ss_pred CCHHHHHHHHHHHhc-CCceEEEEcCCCCCCCHHHHHhHhh
Q 010516 467 VTAKDIASVAQKLLS-SPLTMASYGDVINVPSYDAVSSKFK 506 (508)
Q Consensus 467 vT~~Di~~~a~~~l~-~~~~~~~~G~~~~~p~~~~~~~~~~ 506 (508)
||++||++++++++. ++.+++++|+...+|+++++.+.+.
T Consensus 387 vt~~dv~~~a~~~l~~~~~~~~v~g~~~~~~~~~~~~~~~~ 427 (431)
T 3cx5_A 387 ITVKDVKAWAGKRLWDQDIAIAGTGQIEGLLDYMRIRSDMS 427 (431)
T ss_dssp CCHHHHHHHHHHHTTTCCCEEEEEESCTTSCCHHHHHHTTS
T ss_pred CCHHHHHHHHHHHcccCCcEEEEEcchhcccCHHHHHhHHH
Confidence 999999999999998 8899999999999999999988753
No 10
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=100.00 E-value=1.7e-53 Score=437.88 Aligned_cols=405 Identities=17% Similarity=0.251 Sum_probs=361.7
Q ss_pred CceEEEEcCCCcEEEEeeCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCC----CCChHHHHHHHHHcCCee
Q 010516 77 GKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTR----NRSHLRIVREVEAIGGNV 151 (508)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~----~~s~~~l~~~l~~~g~~~ 151 (508)
++++.++|+||++|++.+++ .|.+.+.+++++|+..|+++..|++|+++||+++||+ +++..++.+.++..|+++
T Consensus 2 ~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~~~~~~~~~~~~~~~l~~~G~~~ 81 (424)
T 3amj_B 2 IKIEHWTAPSGAQVYYVENRTLPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTGSGKSALDENAIADRLADIGARL 81 (424)
T ss_dssp CCCEEEECTTSCEEEEEECCSSSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEECSTTSCEEHHHHHHHHHHTTCEE
T ss_pred CccEEEECCCCcEEEEEECCCCCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccCCCccCCCHHHHHHHHHHhCCEE
Confidence 46789999999999998776 5799999999999999999999999999999999999 999999999999999999
Q ss_pred EEeecceeEEEEEEcccCCh--HHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCC
Q 010516 152 QASASREQMGYSFDALKTYV--PEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALA 228 (508)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~l--~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~ 228 (508)
+++++.+++.|+++++++++ +.+|+++.+++.+|.|++++|+++|+.+.+++++..++|...+.+.+...+|++ ||+
T Consensus 82 ~a~t~~~~t~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~ 161 (424)
T 3amj_B 82 GGGAEADRASFSLRVLSSPAERNSALTILRDILAHPTFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYG 161 (424)
T ss_dssp EEEECSSCEEEEEEEESSHHHHHHHHHHHHHHHHCBCCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGG
T ss_pred EeecCCCeEEEEEEEeccccChhHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCC
Confidence 99999999999999999998 999999999999999999999999999999999988999999999999999976 998
Q ss_pred CCCCCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCCCCCCCCC-CCCcc-CCCeeEeeCC
Q 010516 229 NPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE-PKSVY-TGGDYRCQAD 305 (508)
Q Consensus 229 ~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp~~~~~~~-~~~~~-~~~~~~~~~~ 305 (508)
++. +.+.|++++.++|++||+++|.|+||+++++| +++++++++++++|+.||....+.. +.+.. .+..+....+
T Consensus 162 ~~~--~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (424)
T 3amj_B 162 HVS--SVATLQKISRDQLVSFHRTHYVARTAVVTLVGDITRAEAETIAQQLTADLPAGATLPPLPDPAMPRATVERIANP 239 (424)
T ss_dssp CCC--CHHHHHHCCHHHHHHHHHHHSCTTSCEEEEEESCCHHHHHHHHHHTTTTSCCCCCCCCCCCCCCCCCEEEEEECS
T ss_pred CCC--CHHHHHhCCHHHHHHHHHHhcCCCceEEEEEeCCCHHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCceEEeeCC
Confidence 886 88999999999999999999999999999999 9999999999999999986544322 11222 2333345555
Q ss_pred CCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcceEEE
Q 010516 306 SGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGI 385 (508)
Q Consensus 306 ~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~i 385 (508)
.+++++.++|+.+. .+.++.+++.+++.||+++ |+++|||+.||++.|++|+++++...+.+.|.|.+
T Consensus 240 ~~~~~v~~~~~~~~--~~~~~~~~~~vl~~iLg~~----------~~~srL~~~lR~~~gl~y~v~~~~~~~~~~g~~~i 307 (424)
T 3amj_B 240 ATQAHIAIGMPTLK--RGDPDFFPLVVGNYALGGG----------GFESRLMKEIRDKRGLSYGAYSYFSPQKSMGLFQI 307 (424)
T ss_dssp SSEEEEEEEEEEEB--TTCTTHHHHHHHHHHHTTS----------GGGSHHHHHHTTTTCCEEEEEEEECCBSSCEEEEE
T ss_pred CCccEEEeeccCCC--CCCcchHHHHHHHHHhCCC----------CccchhHHHHHHhCCeEEEeeeeeccCCCceeEEE
Confidence 68999999999876 4778999999999999964 36699999999999999999998887778899999
Q ss_pred EEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCC-CHHHHHHHH
Q 010516 386 QGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERK-PVEHFLKTV 464 (508)
Q Consensus 386 ~~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~-~~~~~~~~i 464 (508)
+++++|++..++++.+.+++.++++ ++++++||+++|+.++.++....+++..++..++.... +|.+. ..+++.+.|
T Consensus 308 ~~~~~~~~~~~~~~~i~~~l~~l~~-~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i 385 (424)
T 3amj_B 308 GFETRAEKADEAVQVANDTLDAFLR-EGPTDAELQAAKDNLINGFALRLDSNAKILGQVAVIGY-YGLPLDYLDHYTERV 385 (424)
T ss_dssp EEEEESTTHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHTSGGGGSSHHHHHHHHHHHHH-TTCCTTTTTSHHHHH
T ss_pred EEEeCcccHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHhhhhHhcCCHHHHHHHHHHHHH-cCCChhHHHHHHHHH
Confidence 9999999999999999999999988 67999999999999999999999999999999987665 56554 367889999
Q ss_pred hcCCHHHHHHHHHHHhc-CCceEEEEcCCCCCCC
Q 010516 465 EGVTAKDIASVAQKLLS-SPLTMASYGDVINVPS 497 (508)
Q Consensus 465 ~~vT~~Di~~~a~~~l~-~~~~~~~~G~~~~~p~ 497 (508)
++||++||++++++|+. ++.+++++||...+.+
T Consensus 386 ~~vt~~dv~~~a~~~l~~~~~~~~~~~~~~~~~~ 419 (424)
T 3amj_B 386 QAVTVEQVREAFARHVKRENLITVVVGGKASLEH 419 (424)
T ss_dssp HTCCHHHHHHHHHHHCCGGGCEEEEEECC-----
T ss_pred HcCCHHHHHHHHHHhcCccceEEEEECChhhhhh
Confidence 99999999999999998 8999999999876644
No 11
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=100.00 E-value=7.4e-49 Score=403.14 Aligned_cols=391 Identities=15% Similarity=0.177 Sum_probs=343.2
Q ss_pred EEcCCCcEEEEeeCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCC-ChHHHHHHHHHc-CCeeEEeecce
Q 010516 82 STLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNR-SHLRIVREVEAI-GGNVQASASRE 158 (508)
Q Consensus 82 ~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~-s~~~l~~~l~~~-g~~~~~~~~~~ 158 (508)
++|+||++|++.+++ .+.+.+.+++++|+..++ .|++|+++||+++|+.++ +..++.+.++.. |++++++++.+
T Consensus 6 ~~L~nG~~v~~~~~~~~~~~~~~~~~~~g~~~e~---~g~a~ll~~~l~~gt~~~~~~~~~~~~l~~~~G~~~~a~t~~~ 82 (425)
T 3d3y_A 6 VQLVKGVNLHVIPTEKYKTVRLLVRFNTRLNHET---ITKRTLLSSLMETNSLNYPNQVKLSERLAELYGASFGIGVSKK 82 (425)
T ss_dssp EEEETTEEEEEEECSSCSEEEEEEEEEEECCTTT---HHHHHHHHHHHHHCCSSSCSHHHHHHHHHHTTSCEEEEEEEEE
T ss_pred eeccCCcEEEEEecCccceEEEEEEEeCCCCccc---hhHHHHHHHHHHhhhhcCCCHHHHHHHHHHHhCceEeeeeeec
Confidence 889999999998775 589999999999997654 699999999999999998 888999999998 99999999988
Q ss_pred e----EEEEEEcccC-------ChHHHHHHHHHhhhCCC-----CCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh
Q 010516 159 Q----MGYSFDALKT-------YVPEMVELLIDCVRNPV-----FLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAG 222 (508)
Q Consensus 159 ~----~~~~~~~~~~-------~l~~~l~ll~~~~~~p~-----f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~ 222 (508)
+ +.|+++++++ +++.+|+++.+++.+|. |++++|+++|+.+.+++++..++|...+.+.++..+
T Consensus 83 ~t~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~ 162 (425)
T 3d3y_A 83 GNQHWFNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQAGQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVY 162 (425)
T ss_dssp TTEEEEEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEETTEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred CceEEEEEEEEecChhhccchhHHHHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHh
Confidence 7 6999999987 69999999999999999 999999999999999999988999999999999999
Q ss_pred c-CC-CCCCCCCCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCCCCCCCCCCCC--ccCC
Q 010516 223 Y-SG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEPKS--VYTG 297 (508)
Q Consensus 223 ~-~~-~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp~~~~~~~~~~--~~~~ 297 (508)
| ++ +++++..|+.+.|++++.++|++||+++|.|+|++++++| ++++++++++ ++|+ ||....+....+ ...+
T Consensus 163 ~~~~~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~ 240 (425)
T 3d3y_A 163 FNQSEDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVNEAELVPLF-KQLP-FTPREEGKAAIFYNQPIR 240 (425)
T ss_dssp TTTCTTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCCHHHHHHHH-HTSC-CCCCCCCCCCSCCCCCCC
T ss_pred ccCCCCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCCHHHHHHHH-HhCC-CCccccccccccccccCC
Confidence 9 76 9999989999999999999999999999999999999999 9999999999 9999 986543221111 1111
Q ss_pred --C-eeEeeCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEee
Q 010516 298 --G-DYRCQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFS 374 (508)
Q Consensus 298 --~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~ 374 (508)
. ......+.+++++.++|+.+..| +.++.+++.|++.||||+ +++|||++||++.|++|++++..
T Consensus 241 ~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~vl~~iLg~~-----------~~s~L~~~lRe~~glaY~v~~~~ 308 (425)
T 3d3y_A 241 NVIEERTEREVLAQSKLNLAYNTDIYY-GDSYYFALQVFNGIFGGF-----------PHSKLFMNVREKEHLAYYASSSI 308 (425)
T ss_dssp SSCEEEEEEEECSSEEEEEEEECCCCT-TSTTHHHHHHHHHHHTTS-----------TTSHHHHHTTTTSCCCSEEEEEE
T ss_pred CcceeEEecCCccccEEEEEeecCCCC-CCchHHHHHHHHHHhCCC-----------hhhHHHHHHHHhcCeEEEEeccc
Confidence 1 12234567899999999986334 678999999999999976 44999999999999999999876
Q ss_pred cCCCCcceEEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCC
Q 010516 375 NIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGER 454 (508)
Q Consensus 375 ~~~~~~g~~~i~~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~ 454 (508)
.. +.|.|.+++.++|+++.++++.+.+++.++++ ++++++||+++|+.++.++....+++..++..++..++.+|.+
T Consensus 309 ~~--~~g~~~i~~~~~~~~~~~~~~~~~~~l~~l~~-~~~~~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 385 (425)
T 3d3y_A 309 DT--FRGFMTVQTGIDGKNRNQVLRLISTELENIRL-GKIRELEIEQTKAMLKNQYILALDNAGAWLEKEYLNELMPQTM 385 (425)
T ss_dssp ET--TTTEEEEEEEECGGGHHHHHHHHHHHHHHHHT-TCCCHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHSTTSC
T ss_pred cc--cCceEEEEEecCHhhHHHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHhHHhcccCHHHHHHHHHHHHhhcCCC
Confidence 64 47889999999999999999999999999998 7899999999999999999999999999999999888743766
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHhcCCceEEEEcCCC
Q 010516 455 KPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVI 493 (508)
Q Consensus 455 ~~~~~~~~~i~~vT~~Di~~~a~~~l~~~~~~~~~G~~~ 493 (508)
.+.+++.+.|++||++||++++++|+.+ ..+++.|+..
T Consensus 386 ~~~~~~~~~i~~vt~edv~~~a~~~~~~-~~~~v~g~~~ 423 (425)
T 3d3y_A 386 LTAEEWIARINAVTIPEIQEVAKRLELQ-AIFFLEGETE 423 (425)
T ss_dssp CCHHHHHHHHHHCCHHHHHHHHHHCEEE-EEEEEEEECC
T ss_pred CCHHHHHHHHHhCCHHHHHHHHHhccCc-eEEEEeCCCC
Confidence 6788999999999999999999998755 4456666543
No 12
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=100.00 E-value=1.3e-47 Score=400.68 Aligned_cols=405 Identities=16% Similarity=0.127 Sum_probs=331.6
Q ss_pred CceEEEEcCCCcEEEEeeCC---CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHH----HcCC
Q 010516 77 GKTKISTLPNGVKIASETSV---SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVE----AIGG 149 (508)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~~---~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~----~~g~ 149 (508)
+.++.++|+||++|++.+++ .|.+.+.+++++|+.+|+++..|++||++||+|+||++++..++.+.++ ..|+
T Consensus 24 p~~~~~~L~NGl~v~~~~~~~~~~~~v~~~l~~~~Gs~~e~~~~~Glahllehmlf~GT~~~~~~~~~~~~~~~~~~~G~ 103 (492)
T 3go9_A 24 PAWQQGKLDNGFSWQLLATPQRPSDRIELRLIVNTGSLSENTQEVGFAHLLPRLALMSSASFTPAQLQSLWQQGIDNERP 103 (492)
T ss_dssp TTEEEEECTTSCEEEEEECTTSTTSCEEEEEEESCCGGGCCGGGTTHHHHHHHHHHHCCTTCCHHHHHHHHHTCSCSSSC
T ss_pred CCeEEEECCCCCEEEEEECCCCCCCeEEEEEEEecccCCCCCCCcCHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhcCC
Confidence 57899999999999975443 5699999999999999999999999999999999999999999998765 4789
Q ss_pred eeEEeecceeEEEEEEccc---CChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-
Q 010516 150 NVQASASREQMGYSFDALK---TYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG- 225 (508)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~---~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~- 225 (508)
.++++++.+++.|.+++++ ++++.+|+++.+.+.+|.|++++|+++|..+.++++...++|....+ ...+++.
T Consensus 104 ~~na~t~~d~t~y~~~~~~~~~~~l~~~l~ll~d~~~~p~f~~~~~~~er~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 180 (492)
T 3go9_A 104 LPPAITSYDFTLYSLSLPNNRPDLLKDALAWLSDTAGNLAVSEQTVNAALNTATDPIATFPQNIQEPWW---RYRLKGSS 180 (492)
T ss_dssp CCSEEECSSCEEEEEEECTTCHHHHHHHHHHHHHHHHCCCCSHHHHHHHHTCSSCCEEESSSCTTCHHH---HHHTTTST
T ss_pred CcceEeCCCeEEEEEECCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcccchhhHHH---HHHhccCC
Confidence 9999999999999999998 67999999999999999999999999998777777776677765433 2345555
Q ss_pred CCCCCCCCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCCCCCCCCC--C-CCccCCC-ee
Q 010516 226 ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--P-KSVYTGG-DY 300 (508)
Q Consensus 226 ~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp~~~~~~~--~-~~~~~~~-~~ 300 (508)
+++++..+ +.|++++.++|++||++||+|+||+++++| ++++++.++++++|+.||....... + .++..+. ..
T Consensus 181 ~~~~~~~~--~~i~~it~~dL~~fy~~~Y~p~n~~l~vvGdvd~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (492)
T 3go9_A 181 LIGHDPGQ--PVTQPVDVEKLKQFYQQWYTPDAMTLYVVGNVDSRSIAAQISKAFSELKGKRTAPAAVATLAPLPPEPVS 258 (492)
T ss_dssp TTTCCTTC--CCCSSCCHHHHHHHHHHHCCGGGEEEEEEESCCHHHHHHHHHHHHTTCCCCCSSCCCCCCCCCCCSSCEE
T ss_pred cccCCCch--hhhhcCCHHHHHHHHHHhcCcCceEEEEEcCCCHHHHHHHHHHHhhcCCCCCCCCCCCCCCCCCCCCceE
Confidence 66776533 578999999999999999999999999999 9999999999999999987643211 1 1222222 23
Q ss_pred EeeCCCCceEEEEEeecCCCCCCCcchHHH------HHHHHhcCCCCCCCCCCCCCCcccHHHHHHHh--hCCCeEEEEE
Q 010516 301 RCQADSGLTHFVLAFELPGGWHKDKDAMTL------TVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLN--EFPQVQSFSA 372 (508)
Q Consensus 301 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~------~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~--~~~~~Y~v~a 372 (508)
....+.+++++.++|..+. ...++..++ .+++.+|+ ++|+.+||+ +.+++|++++
T Consensus 259 ~~~~~~~q~~v~l~~~~~~--~~~~d~~~l~~~~~~~v~~~iLg---------------~~L~~~lre~~~~gl~y~~~s 321 (492)
T 3go9_A 259 LMNEQAAQDTLSLMWDTPW--HPIQDSMALSRYWRSDLAREALF---------------WHIKQVLEKNNQKNLKLGFDC 321 (492)
T ss_dssp EEESSCSSEEEEEEEEEEC--CCCCSHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHSCCTTCEEEEEE
T ss_pred EEcCCCCCcEEEEEecCCC--CCcccHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHhhccccccccCc
Confidence 3566778999999999986 455665554 79999998 799999999 8899999999
Q ss_pred eecCCCCcceEEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhcc-----ChHHHHHHHHHH
Q 010516 373 FSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLE-----SRMVVSEDIGRQ 447 (508)
Q Consensus 373 ~~~~~~~~g~~~i~~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~-----s~~~~~~~~~~~ 447 (508)
+.....+.+. +++++++++.+++++.+.++++++.+ +++|++||+++|+.+++++...++ ++...++.+.+.
T Consensus 322 ~~~~~~~~~~--~~i~~~~~~~~~a~~~i~~el~~l~~-~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~ 398 (492)
T 3go9_A 322 RVQYQRAQCA--IHLNTPVENLTANMTFVARELAALRA-NGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRS 398 (492)
T ss_dssp EEETTEEEEE--EEEEECGGGHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHH
T ss_pred hhhhhhcceE--EEEEcCcccHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 8776555554 44556899999999999999999998 789999999999999999987654 466778888877
Q ss_pred HHHcCCCCCHHH----HHHHHhcCCHHHHHHHHHHHhcCCceEEEEcCCCCCC-CHHHHHhHhh
Q 010516 448 VLTYGERKPVEH----FLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVINVP-SYDAVSSKFK 506 (508)
Q Consensus 448 ~~~~g~~~~~~~----~~~~i~~vT~~Di~~~a~~~l~~~~~~~~~G~~~~~p-~~~~~~~~~~ 506 (508)
+.........++ +.+.|++||++||++++++++..+..++++|+...+. +.+++...+.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~i~~vT~edV~~~a~~~l~~~~~~vvvg~~~~~e~~~~~l~~~~~ 462 (492)
T 3go9_A 399 QQSGVVDIAPEQYQKLRQAFLSGLTLAELNRELKQQLSQDTTLVLMQPKGEPEVNVKALQEIYN 462 (492)
T ss_dssp HHHTCCCBCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCEEEEEEETTSCCCCHHHHHHHHH
T ss_pred HhcCCCcCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhCCCCeEEEEcCCCCCCccHHHHHHHHH
Confidence 764443333333 3466999999999999999999667788888877765 4666665543
No 13
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=6.9e-46 Score=418.09 Aligned_cols=405 Identities=13% Similarity=0.106 Sum_probs=347.2
Q ss_pred CCCceEEEEcCCCcEEEEeeCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCC-hHHHHHHHHHcCCeeE
Q 010516 75 EPGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRS-HLRIVREVEAIGGNVQ 152 (508)
Q Consensus 75 ~~~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s-~~~l~~~l~~~g~~~~ 152 (508)
....++..+|+||++|++.+++ .+.+.+.+++++|+.+|+++..|++|++|||+|+||.+++ ..++.+.++.+|+++|
T Consensus 17 d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~e~~~~~GlAH~lEHmlf~Gt~~~p~~~~~~~~l~~~Gg~~N 96 (939)
T 1q2l_A 17 DNRQYQAIRLDNGMVVLLVSDPQAVKSLSALVVPVGSLEDPEAYQGLAHYLEHMSLMGSKKYPQADSLAEYLKMHGGSHN 96 (939)
T ss_dssp CCCEEEEEEETTSCEEEEEECTTCSSEEEEEEESCCGGGCCGGGTTHHHHHHHHTTSCBSSSCSTTHHHHHHHTTTCEEE
T ss_pred CCcceEEEEecCCCEEEEEECCCCCceEEEEEeCccCCCCCCCCCchHHHHHHHHccCCCCCCCcchHHHHHHHcCCcce
Confidence 3346889999999999987766 5689999999999999999999999999999999999997 4799999999999999
Q ss_pred EeecceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCCCCC
Q 010516 153 ASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPL 231 (508)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~ 231 (508)
++|+.+++.|.+++++++++.+|+++.+++.+|.|++++|++++..+.+|++...++|...+.+.+...+|++ ||+++.
T Consensus 97 A~T~~d~T~y~~~~~~~~l~~~L~~l~d~~~~p~f~~~~~~~Er~~v~~E~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 176 (939)
T 1q2l_A 97 ASTAPYRTAFYLEVENDALPGAVDRLADAIAEPLLDKKYAERERNAVNAELTMARTRDGMRMAQVSAETINPAHPGSKFS 176 (939)
T ss_dssp EEECSSCEEEEEEECGGGHHHHHHHHHHHHHCBCCCSTTHHHHHHHHHHHHHHHTTSHHHHHHHHHHHSSCTTSGGGSCC
T ss_pred EEECCCcEEEEEEeCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHhcCCCCCCccCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999977 999999
Q ss_pred CCChHHhcc----CCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCCCCCCCCC--CCCccCC----Cee
Q 010516 232 LAPESAINR----LNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREE--PKSVYTG----GDY 300 (508)
Q Consensus 232 ~~~~~~l~~----l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp~~~~~~~--~~~~~~~----~~~ 300 (508)
.|+.+.|++ ++.++|++||++||+|+||+++|+| ++++++.++++++|+.||....+.. ..+.+.. ..+
T Consensus 177 ~G~~~~l~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~G~~~~~~l~~~v~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (939)
T 1q2l_A 177 GGNLETLSDKPGNPVQQALKDFHEKYYSANLMKAVIYSNKPLPELAKMAADTFGRVPNKESKKPEITVPVVTDAQKGIII 256 (939)
T ss_dssp SCCHHHHSCBTTBCHHHHHHHHHHHHCCTTTCEEEEEESSCHHHHHHHHHHTGGGSCCCCCCCCCCCSCSCCGGGSSEEE
T ss_pred CCCHHHHhcCCCchHHHHHHHHHHhccCHhheEEEEEcCCCHHHHHHHHHHHhhhhccCCCCCCCCCCCCCCHHHcCEEE
Confidence 999999999 9999999999999999999999999 9999999999999999987543322 1122222 122
Q ss_pred EeeCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEee--cCCC
Q 010516 301 RCQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFS--NIYN 378 (508)
Q Consensus 301 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~--~~~~ 378 (508)
...+..+++++.++|+.|. +....+..++.+++.+||++++ ++|+..||+ .|++|+++++. ..+.
T Consensus 257 ~~~~~~~~~~l~i~~~~~~-~~~~~~~~~~~~l~~lLg~~~~-----------s~L~~~L~~-~gl~~~~~a~~~~~~~~ 323 (939)
T 1q2l_A 257 HYVPALPRKVLRVEFRIDN-NSAKFRSKTDELITYLIGNRSP-----------GTLSDWLQK-QGLVEGISANSDPIVNG 323 (939)
T ss_dssp EECCSSCCCEEEEEEEEEC-CGGGGGGCHHHHHHHHHHCCCT-----------TSHHHHHHH-TTCEEEEEEEEESSTTS
T ss_pred EEEeCCCCcEEEEEEEcCC-hHHhhhhCHHHHHHHHhcCCCC-----------CcHHHHHHH-cCCchheeeccccccCC
Confidence 2445668899999999987 3233366788999999998754 899999995 69999999874 3345
Q ss_pred CcceEEEEEEeCc---chHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhc-cChHHHHHHHHHHHHHcCCC
Q 010516 379 HSGMFGIQGTTGS---DFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNL-ESRMVVSEDIGRQVLTYGER 454 (508)
Q Consensus 379 ~~g~~~i~~~~~p---~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~-~s~~~~~~~~~~~~~~~g~~ 454 (508)
+.|.|.|++.+.+ ++.+++++.+.++++++.+ ++++++||+++|+.+..++.... +++...+..+...+. +...
T Consensus 324 ~~g~f~i~~~~~~~~~~~~~~~~~~i~~~l~~l~~-~g~~~~el~~~k~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~ 401 (939)
T 1q2l_A 324 NSGVLAISASLTDKGLANRDQVVAAIFSYLNLLRE-KGIDKQYFDELANVLDIDFRYPSITRDMDYVEWLADTMI-RVPV 401 (939)
T ss_dssp SEEEEEEEEEECHHHHHTHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHSCCCCCSHHHHHHHHHHHT-TSCG
T ss_pred CceEEEEEEEEChhhhhhHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHhh-cCCH
Confidence 7799999999887 4889999999999999988 67999999999999999998766 667778888887765 3322
Q ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHhcCCceEEEEcCCCC
Q 010516 455 KPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDVIN 494 (508)
Q Consensus 455 ~~~~~~~~~i~~vT~~Di~~~a~~~l~~~~~~~~~G~~~~ 494 (508)
.........++++|++||+++++++..++.+++++||...
T Consensus 402 ~~~~~~~~~i~~vt~~~i~~~~~~l~~~~~~~~~~~p~~~ 441 (939)
T 1q2l_A 402 EHTLDAVNIADRYDAKAVKERLAMMTPQNARIWYISPKEP 441 (939)
T ss_dssp GGTTTTTTCCCCCCHHHHHHHHHHCSGGGCEEEEECTTCC
T ss_pred HHHhcCchhhhccCHHHHHHHHHhcCHHHcEEEEEcCCCC
Confidence 2233445679999999999999874348888999998654
No 14
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=7.7e-43 Score=395.23 Aligned_cols=403 Identities=16% Similarity=0.152 Sum_probs=337.5
Q ss_pred CCCceEEEEcCCCcEEEEeeCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCCh-HHHHHHHHHcCCeeE
Q 010516 75 EPGKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSH-LRIVREVEAIGGNVQ 152 (508)
Q Consensus 75 ~~~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~-~~l~~~l~~~g~~~~ 152 (508)
....++..+|+||++|++.+++ .+.+.+.+++++|+..|+++..|++|++|||+|+||.+++. .++.+.++.+|+.+|
T Consensus 31 d~~~~~~~~L~NGl~v~~~~~~~~~~~~~~l~v~~Gs~~ep~~~~GlAH~lEHmlf~GT~~~p~~~~~~~~l~~~Gg~~N 110 (990)
T 3cww_A 31 DKREYRGLELANGIKVLLISDPTTDKSSAALDVHIGSLSDPPNIAGLSHFLQHMLFLGTKKYPKENEYSQFLSEHAGSSN 110 (990)
T ss_dssp CCCEEEEEEETTCCEEEEEECTTCSEEEEEEEESCCGGGSCTTSTTHHHHHHHHGGGCBSSSCSTTHHHHHHHTTTCEEE
T ss_pred CCcceEEEEeCCCCEEEEEECCCCCcEEEEEEecccCCCCCCCCCChHHHHHHHHhcCCCCCCCcchHHHHHHHcCCcee
Confidence 3467899999999999987666 46999999999999999999999999999999999999987 799999999999999
Q ss_pred EeecceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCC-CCCCCC
Q 010516 153 ASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSG-ALANPL 231 (508)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~ 231 (508)
++|+.+++.|.+++++++++.+|+++.+++.+|.|++++|++++..+.+|++...++|...+.+.+...++++ ||+++.
T Consensus 111 A~T~~d~T~y~~~~~~~~l~~~l~~~~d~~~~p~f~~~~~~~E~~~V~~E~~~~~~~~~~~~~~~~~~~~~~~~py~~~~ 190 (990)
T 3cww_A 111 AFTSGEHTNYYFDVSHEHLEGALDRFAQFFLSPLFDESAKDREVNAVDSEHEKNVMNDAWRLFQLEKATGNPKHPFSKFG 190 (990)
T ss_dssp EEECSSCEEEEEEEEGGGHHHHHHHHHGGGTCBCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTSCTTSGGGCCC
T ss_pred EEECCCceEEEEEeCHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHhcCCCCCcccCC
Confidence 9999999999999999999999999999999999999999999999999999988999998888888888877 999999
Q ss_pred CCChHHhccC-------CHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCCCCCCCCCC--CCccCC----
Q 010516 232 LAPESAINRL-------NSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIHPREEP--KSVYTG---- 297 (508)
Q Consensus 232 ~~~~~~l~~l-------~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp~~~~~~~~--~~~~~~---- 297 (508)
.|+.+.|+.+ +.++|++||++||+|+||+++++| +++++++++++++|+.||....+... .+++..
T Consensus 191 ~G~~~~l~~~~~~~~~~~~~~l~~f~~~~Y~p~n~~l~v~Gd~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 270 (990)
T 3cww_A 191 TGNKYTLETRPNQEGIDVRQELLKFHSAYYSSNLMAVVVLGRESLDDLTNLVVKLFSEVENKNVPLPEFPEHPFQEEHLK 270 (990)
T ss_dssp SCCHHHHTHHHHHTTCCHHHHHHHHHHHHCCGGGEEEEEEESSCHHHHHHHHHHHHTTSCCCCCCCCCCCSCSSCGGGSS
T ss_pred CCCHHHHhhccccccchHHHHHHHHHHHhCCHhheEEEEEcCCCHHHHHHHHHHHhcCCccCCCCCCCCCCCCCChHHcC
Confidence 9999999999 999999999999999999999999 99999999999999999876443221 112211
Q ss_pred CeeEeeCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecC-
Q 010516 298 GDYRCQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNI- 376 (508)
Q Consensus 298 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~- 376 (508)
......+..+++++.++|..|. .....+..++.+++.||++++. +.|+..||+ .|++|+++++...
T Consensus 271 ~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~l~~lLg~~~~-----------~sl~~~Lr~-~g~~~~~~a~~~~~ 337 (990)
T 3cww_A 271 QLYKIVPIKDIRNLYVTFPIPD-LQKYYKSNPGHYLGHLIGHEGP-----------GSLLSELKS-KGWVNTLVGGQKAG 337 (990)
T ss_dssp EEEEECCSSSCCEEEEEEEECC-CGGGTTTCHHHHHHHHHTCCST-----------TCHHHHHHH-TTSCSCEEEEEEEE
T ss_pred eEEEEEECCCCcEEEEEEEcCC-hhhhhhhCHHHHHHHHhcCCCC-----------CcHHHHHHH-CCCcceeeeccccC
Confidence 1222344457899999999987 2223567889999999986422 346779996 5999999887653
Q ss_pred CCCcceEEEEEEeCc---chHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHh-ccChHHHHHHHHHHHHHcC
Q 010516 377 YNHSGMFGIQGTTGS---DFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMN-LESRMVVSEDIGRQVLTYG 452 (508)
Q Consensus 377 ~~~~g~~~i~~~~~p---~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~-~~s~~~~~~~~~~~~~~~g 452 (508)
..+.+.|.|++.+.+ ++.+++++.+.++++++.+ +++++++|++++......+... .+++...+..+...+. ..
T Consensus 338 ~~~~~~f~i~~~~~~~g~~~~~~~~~~i~~~l~~l~~-~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~ 415 (990)
T 3cww_A 338 ARGFMFFIINVDLTEEGLLHVEDIILHMFQYIQKLRA-EGPQEWVFQELKDLNAVAFRFKDKERPRGYTSKIAGILH-YY 415 (990)
T ss_dssp ETTEEEEEEEEECCHHHHHTHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHTCCCCCHHHHHHHHHHHTT-TS
T ss_pred CCCccEEEEEEEEChHHhhhHHHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHhcccCCcCCHHHHHHHHHHHHh-hC
Confidence 456789999999765 4889999999999999988 6799999999998887777654 4567777777765543 32
Q ss_pred CCCCHHHHHHHHhcCCHHHHHHHHHHHhcCCceEEEEcCC
Q 010516 453 ERKPVEHFLKTVEGVTAKDIASVAQKLLSSPLTMASYGDV 492 (508)
Q Consensus 453 ~~~~~~~~~~~i~~vT~~Di~~~a~~~l~~~~~~~~~G~~ 492 (508)
.+.......+.|+++|++||+++++++..++.+++++|+.
T Consensus 416 ~~~~~~~~~~~i~~~t~~~i~~~~~~l~~~~~~~~~~~p~ 455 (990)
T 3cww_A 416 PLEEVLTAEYLLEEFRPDLIEMVLDKLRPENVRVAIVSKS 455 (990)
T ss_dssp CGGGTTTTTTCCCCCCHHHHHHHHTTCSGGGCEEEEECGG
T ss_pred CHHHHhccchhhhcCCHHHHHHHHHhcCHhHEEEEEEcCC
Confidence 2222334457799999999999998655577788888874
No 15
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=1.4e-42 Score=393.02 Aligned_cols=400 Identities=12% Similarity=0.068 Sum_probs=328.1
Q ss_pred CceEEEEcCCCcEEEEeeCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHH-HHHHH-HcCCeeEEe
Q 010516 77 GKTKISTLPNGVKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRI-VREVE-AIGGNVQAS 154 (508)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l-~~~l~-~~g~~~~~~ 154 (508)
..++..+|+||++|++.+++.... ++..|+..+++...|++|++|||+|+||.+++..++ .+.+. ..|+.+|++
T Consensus 36 ~~~~~~~l~nGl~v~~~~~~~~~~----~~~vg~~~e~~~~~GlAH~lEHm~f~Gt~~~p~~~~~~~~l~~~~g~~~NA~ 111 (995)
T 2fge_A 36 KAILFKHKKTGCEVMSVSNEDENK----VFGVVFRTPPKDSTGIPHILQHSVLCGSRKYPVKEPFVELLKGSLHTFLNAF 111 (995)
T ss_dssp EEEEEEETTTCCEEEEEECSCSSE----EEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCSSCHHHHHHHHCCEEEECCE
T ss_pred eEEEEEECCCCCEEEEEEcCCCcc----EEEEEeCCCCcCCCChHHHHHHHHhCCCCCCCCccHHHHHHHhccCCCceee
Confidence 456778999999999987775433 356788889999999999999999999999998774 44454 468899999
Q ss_pred ecceeEEEEEEcc-cCChHHHHHHHHHhhhCCCC--CHHHHHHH---------------HHHHHHHHHhhcCChHHHHHH
Q 010516 155 ASREQMGYSFDAL-KTYVPEMVELLIDCVRNPVF--LDWEVNEQ---------------LTKVKSEISEVSNNPQSLLLE 216 (508)
Q Consensus 155 ~~~~~~~~~~~~~-~~~l~~~l~ll~~~~~~p~f--~~~~~~~~---------------k~~~~~e~~~~~~~p~~~~~~ 216 (508)
|+.+++.|.+.+. .++++.+|+++.+.+.+|.| ++++|+++ |..+.+|++...++|...+.+
T Consensus 112 T~~d~T~y~~~~~~~~~~~~~l~~~~d~~~~p~~~~~~~~~~~E~~~~e~~~~~~~~~~r~vV~~E~~~~~~~p~~~~~~ 191 (995)
T 2fge_A 112 TYPDRTCYPVASTNTKDFYNLVDVYLDAVFFPKCVDDAHTFQQEGWHYELNDPSEDISYKGVVFNEMKGVYSQPDNILGR 191 (995)
T ss_dssp ECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTSSHHHHHHTCEEECSCTTSCCEEECHHHHHHHHHTTSHHHHHHH
T ss_pred ECCCceEEEEecCCHHHHHHHHHHHHHHHhCCCCCCCHHHHHHhhhhhhcccccccccccchHHHHHHhhhCCHHHHHHH
Confidence 9999999999875 56999999999999999999 99999999 899999999999999999999
Q ss_pred HHHHHhcCC-CCCCCCCCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCC--CCCC--CCC
Q 010516 217 AIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLP--SIHP--REE 290 (508)
Q Consensus 217 ~l~~~~~~~-~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp--~~~~--~~~ 290 (508)
.+...+|++ ||+++..|+.+.|++++.++|++||++||+|+||+++++| +++++++++++++|+.|| .... +..
T Consensus 192 ~~~~~~~~~~py~~~~~G~~~~i~~~t~~~l~~f~~~~Y~p~n~~l~v~Gd~d~~~~~~~i~~~f~~~~~~~~~~~~~~~ 271 (995)
T 2fge_A 192 IAQQALSPENTYGVDSGGDPKDIPNLTFEEFKEFHRQYYHPSNARIWFYGDDDPVHRLRVLSEYLDMFEASPSPNSSKIK 271 (995)
T ss_dssp HHHHHHCTTSGGGSCTTCCTTTGGGCCHHHHHHHHHHHSSGGGEEEEEEESSCHHHHHHHHHHHHTTCCCCSHHHHSCCC
T ss_pred HHHHHhCCCCCCCCCCCCChHhhhhcCHHHHHHHHHHhCCccceEEEEEcCCCHHHHHHHHHHHHhhCCccccCCCcccC
Confidence 999999987 9999999999999999999999999999999999999999 999999999999999998 4221 111
Q ss_pred CCCccCCCe---eEe-----eCCCCceEEEEEeecCCCCC-CCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHH
Q 010516 291 PKSVYTGGD---YRC-----QADSGLTHFVLAFELPGGWH-KDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVL 361 (508)
Q Consensus 291 ~~~~~~~~~---~~~-----~~~~~~~~v~~~~~~~~~~~-~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR 361 (508)
..+.+.... ... .++.+++++.++|..|. +. +.++..++.+++.+|+++. .+||++.||
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~a~~vl~~~Lg~~~-----------~S~L~~~l~ 339 (995)
T 2fge_A 272 FQKLFSEPVRLVEKYPAGRDGDLKKKHMLCVNWLLSE-KPLDLQTQLALGFLDHLMLGTP-----------ASPLRKILL 339 (995)
T ss_dssp CCCCCSSCEEEEEEEECCSSSCGGGCEEEEEEEECCS-SCCCHHHHHHHHHHHHHHHSST-----------TSHHHHHHH
T ss_pred CCCCCCCCceEEEecccCCCCCccCccEEEEEEEcCC-CcCCHHHHHHHHHHHHHHcCCC-----------CCHHHHHHH
Confidence 122333321 112 23357999999999987 33 3578999999999998753 499999999
Q ss_pred hhCCCeEEEEEe-ecCCCCcceEEEE-EEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhc--cCh
Q 010516 362 NEFPQVQSFSAF-SNIYNHSGMFGIQ-GTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNL--ESR 437 (508)
Q Consensus 362 ~~~~~~Y~v~a~-~~~~~~~g~~~i~-~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~--~s~ 437 (508)
++ |++|+++++ .....+.+.|.|. ..+++++.+++++.+.++++++.+ ++++++||+++|+.++..+.... +++
T Consensus 340 e~-gl~~~~~~~~~~~~~~~~~f~i~~~~~~~~~~~~~~~~i~~~l~~l~~-~g~~~~el~~ak~~~~~~~~~~~~~~~~ 417 (995)
T 2fge_A 340 ES-GLGEALVSSGLSDELLQPQFGIGLKGVSEENVQKVEELIMDTLKKLAE-EGFDNDAVEASMNTIEFSLRENNTGSFP 417 (995)
T ss_dssp HT-TSCSEECSCEEECSSSSCEEEEEEEEECGGGHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHCCCTTSC
T ss_pred hc-CCCcceeeccccccccCeEEEEEEEeCCHHHHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHHhccCCCCc
Confidence 86 899999875 5444557889985 468999999999999999999988 78999999999999999887654 234
Q ss_pred H--HHHHHHHHHHHHcCCCCCHHHHHHHHhcCCH----H----HHHHHHHHHhc-C-CceEEEEcCCCC
Q 010516 438 M--VVSEDIGRQVLTYGERKPVEHFLKTVEGVTA----K----DIASVAQKLLS-S-PLTMASYGDVIN 494 (508)
Q Consensus 438 ~--~~~~~~~~~~~~~g~~~~~~~~~~~i~~vT~----~----Di~~~a~~~l~-~-~~~~~~~G~~~~ 494 (508)
. ..+..+...++.++.+....++.+.+++++. + ||++++++|+. + +.++++++|...
T Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~~~~p~~~ 486 (995)
T 2fge_A 418 RGLSLMLQSISKWIYDMDPFEPLKYTEPLKALKTRIAEEGSKAVFSPLIEKLILNNSHRVTIEMQPDPE 486 (995)
T ss_dssp HHHHHHHHHHHHHTTTSCSSGGGCCHHHHHHHHHHHHHHCHHHHHHHHHHHHTTTCCCEEEEEEEEETT
T ss_pred cHHHHHHHHHHHHhcCCChHHHhhhHHHHHHHHHHhcCCccHHHHHHHHHHHhcCCCceEEEEEEcCcc
Confidence 4 4566777777655566655555566666666 8 89999999997 3 456777776543
No 16
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=100.00 E-value=2.9e-41 Score=338.22 Aligned_cols=346 Identities=23% Similarity=0.310 Sum_probs=289.1
Q ss_pred cEEEEeeCCCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeEEeecceeEEEEEEcc
Q 010516 88 VKIASETSVSPVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDAL 167 (508)
Q Consensus 88 l~v~~~~~~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~ 167 (508)
+||++++.+.|.+++.+++++|+.+| ...|++|+++||+|+||++++..++.+.++..|++++++++.+++.|+++++
T Consensus 1 l~v~~~~~~~~~v~~~~~~~~Gs~~e--~~~G~ah~leh~lf~Gt~~~~~~~l~~~l~~~G~~~na~t~~~~t~~~~~~~ 78 (352)
T 3cx5_B 1 LTVSARDAPTKISTLAVKVHGGSRYA--TKDGVAHLLNRFNFQNTNTRSALKLVRESELLGGTFKSTLDREYITLKATFL 78 (352)
T ss_dssp CEEEEECCSCSEEEEEEEESCSGGGC--SSTTHHHHHHHHTTSCBSSSCHHHHHHHHHHHTCEEEEEECSSCEEEEEEEE
T ss_pred CEEEEeeCCCceEEEEEEEeeeccCC--CcccHHHHHHHHhccCcCCCCHHHHHHHHHHhCCeEEEEEccceEEEEEEec
Confidence 68999888889999999999999997 3789999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHHHHHHHhhhCCCCCHHHHH-HHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChHHhccCCHHHH
Q 010516 168 KTYVPEMVELLIDCVRNPVFLDWEVN-EQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLL 246 (508)
Q Consensus 168 ~~~l~~~l~ll~~~~~~p~f~~~~~~-~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~l 246 (508)
+++++.+|+++.+++.+|.|++++|+ ++|+.+.++++...++|...+.+.++..+|++|++++.. .+.|++++.+++
T Consensus 79 ~~~l~~~l~ll~d~~~~p~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~p~~~~~~--~~~l~~it~~~l 156 (352)
T 3cx5_B 79 KDDLPYYVNALADVLYKTAFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITFRKGLGNPLL--YDGVERVSLQDI 156 (352)
T ss_dssp GGGHHHHHHHHHHHHHHBCCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTTTSCSS--CCSSSCCCHHHH
T ss_pred hhhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCCCccc--hhhhccCCHHHH
Confidence 99999999999999999999999998 999999999999999999999999999999668888863 689999999999
Q ss_pred HHHHHhhcCCCCeEEEEcCCCHHHHHHHH-HhhhcCCCCCCCCCC--CCCccCCCeeEeeCCCCceEEEEEeecCCCCCC
Q 010516 247 EEFVAENYTGPRMVLAASGVEHDQLVSVA-EPLLSDLPSIHPREE--PKSVYTGGDYRCQADSGLTHFVLAFELPGGWHK 323 (508)
Q Consensus 247 ~~f~~~~~~~~~~~l~i~Gv~~e~l~~~~-~~~~~~lp~~~~~~~--~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 323 (508)
++||+++|.|+||+++++|++++++++++ +++|+.||....+.. +.+.+.++...... ..++.+.+++.. +
T Consensus 157 ~~f~~~~y~~~n~~l~v~G~~~~~~~~~i~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----~ 230 (352)
T 3cx5_B 157 KDFADKVYTKENLEVSGENVVEADLKRFVDESLLSTLPAGKSLVSKSEPKFFLGEENRVRF-IGDSVAAIGIPV-----N 230 (352)
T ss_dssp HHHHHHHCCGGGEEEEEESSCHHHHHHHHHHSTTTTSCCCCCCCCCSCCCCCCSCEEEEEC-SSSEEEEEEEEE-----C
T ss_pred HHHHHHhCCcCcEEEEEeCCCHHHHHHHHHHHhhccCCCCCCCCCCCCCCCccCCeEEEec-CCCceEEEecCC-----C
Confidence 99999999999999999999999999999 899999986544321 11223343444433 356666665432 4
Q ss_pred CcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcceEEEEEEeC-cchHHHHHHHHH
Q 010516 324 DKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTG-SDFVSKAIDLAA 402 (508)
Q Consensus 324 ~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~i~~~~~-p~~~~~~~~~~~ 402 (508)
+++.+++.|++.||+ + +||++.|++ ++++...+.+.|.|.++++++ ++.+.+ .+.
T Consensus 231 ~~~~~~l~vl~~iLg---------------~----~lre~~gl~--~~~~~~~~~~~g~~~i~~~~~~~~~~~~---~i~ 286 (352)
T 3cx5_B 231 KASLAQYEVLANYLT---------------S----ALSELSGLI--SSAKLDKFTDGGLFTLFVRDQDSAVVSS---NIK 286 (352)
T ss_dssp TTTHHHHHHHHHHHH---------------S----TTSTTGGGC--SEEEEEEETTEEEEEEEEEESCHHHHHH---HHH
T ss_pred ChhHHHHHHHHHHhC---------------c----chhcccCce--EEEeecCcCcceeEEEEEEeCCHHHHHH---HHH
Confidence 578999999999998 3 678888876 455555566789999999997 554444 444
Q ss_pred HHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCCHHHHHHHHhcCCHHHHHHHHHHHhcC
Q 010516 403 RELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLKTVEGVTAKDIASVAQKLLSS 482 (508)
Q Consensus 403 ~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~vT~~Di~~~a~~~l~~ 482 (508)
+++.+ +++++||+++|+.++.++....++. |.+.+. .|++||++ + + +
T Consensus 287 ~~l~~-----~~t~~el~~ak~~~~~~~~~~~~~~--------------~~~~~~-----~i~~vt~~-------~-~-~ 333 (352)
T 3cx5_B 287 KIVAD-----LKKGKDLSPAINYTKLKNAVQNESV--------------SSPIEL-----NFDAVKDF-------K-L-G 333 (352)
T ss_dssp HHHHH-----HHSCEECGGGHHHHHHHHHHHCCST--------------TCCCCS-----CGGGCCEE-------C-C-C
T ss_pred HHHHh-----cCCHHHHHHHHHHHHHHHHhhhhcc--------------CCccce-----eeeeeeHh-------h-c-C
Confidence 44432 3889999999999999999988873 333333 59999933 2 5 8
Q ss_pred CceEEEEcCCCCCCCHHH
Q 010516 483 PLTMASYGDVINVPSYDA 500 (508)
Q Consensus 483 ~~~~~~~G~~~~~p~~~~ 500 (508)
+++++++||...+|.+++
T Consensus 334 ~~~~~~~G~~~~~~~~~~ 351 (352)
T 3cx5_B 334 KFNYVAVGDVSNLPYLDE 351 (352)
T ss_dssp SCEEEEEESGGGSCCGGG
T ss_pred CceEEEEccccccCcccc
Confidence 999999999999998875
No 17
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=100.00 E-value=1.4e-40 Score=373.50 Aligned_cols=403 Identities=13% Similarity=0.095 Sum_probs=323.3
Q ss_pred CCCceEEEEcCCCcEEEEeeCCCC-eEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHH--cCCee
Q 010516 75 EPGKTKISTLPNGVKIASETSVSP-VASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEA--IGGNV 151 (508)
Q Consensus 75 ~~~~~~~~~L~NGl~v~~~~~~~~-~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~--~g~~~ 151 (508)
..+.++...|+||++|++.+++.+ .+. ..+..|+..+++...|++|++|||+|+|+.+++..++...++. .|+.+
T Consensus 83 ~~~~~~~~~l~nGl~vl~i~~~~~~~~~--~~f~vg~~tep~~~~GvAH~lEHmlf~GS~k~p~~e~~~~l~~~slG~~l 160 (1193)
T 3s5m_A 83 KMTYTVYQHKKAKTQVISLGTNDPLDVE--QAFAFYVKTLTHSGKGIPHILEHSVLSGSKNYNYKNSIGLLEKGTLHTHL 160 (1193)
T ss_dssp TEEEEEEEETTTCCEEEEEEECCTTCCC--EEEEEEEECCCSSSSCHHHHHHHHTTSCBTTBCCTTHHHHHHHSCCEEEE
T ss_pred cccceEEEECCCCCEEEEEECCCCCeEE--EEEEEEECCCCCCCchHHHHHHHHHhCCCCCCChhhHHHHHHHhccCceE
Confidence 335788899999999998666543 222 3345567778889999999999999999999999999999988 88999
Q ss_pred EEeecceeEEEEEEccc-CChHHHHHHHHHhhhCCCCCHHH--HHHH-----------------------------HHHH
Q 010516 152 QASASREQMGYSFDALK-TYVPEMVELLIDCVRNPVFLDWE--VNEQ-----------------------------LTKV 199 (508)
Q Consensus 152 ~~~~~~~~~~~~~~~~~-~~l~~~l~ll~~~~~~p~f~~~~--~~~~-----------------------------k~~~ 199 (508)
|++|+.+++.|.+++.+ ++++.+|+++.+.+.+|.|++++ |.++ |..+
T Consensus 161 NA~T~~D~T~Y~~~~~~~~~l~~~L~l~~D~v~~P~l~~~~~~F~qE~~~~E~e~~~~~Er~~~~~~~~~~~~l~~k~vV 240 (1193)
T 3s5m_A 161 NAYTFNDRTVYMAGSMNNKDFFNIMGVYMDSVFQPNVLENKYIFETEGWTYEVEKLKEDEKGKAEIPQMKDYKVSFNGIV 240 (1193)
T ss_dssp EEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHSBGGGTCHHHHHHHTCEEEEEECCTTTTTCTTSCEETTEEEEEECHH
T ss_pred EeEEcCCeEEEEEEecCHHHHHHHHHHHHHHHhCCCCccccchhhhhhhhhhhhccchhhhccccccccccchhhHHHHH
Confidence 99999999999999887 89999999999999999998877 8776 5689
Q ss_pred HHHHHhhcCChHHHHHHHHHHHhcCC-CCCCCCCCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHh
Q 010516 200 KSEISEVSNNPQSLLLEAIHSAGYSG-ALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEP 277 (508)
Q Consensus 200 ~~e~~~~~~~p~~~~~~~l~~~~~~~-~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~ 277 (508)
.+|++...++|...+.+.+...+|++ ||+++..|+++.|..++.++|++||++||+|+|++++++| ++++++++++++
T Consensus 241 ~~E~k~~~~~p~~~~~~~l~~~lf~~hpY~~~~~G~~e~I~~lt~edl~~F~~~~Y~P~Na~l~v~Gdid~~~~~~~v~~ 320 (1193)
T 3s5m_A 241 YNEMKGALSSPLEDLYHEEMKYMFPDNVHSNNSGGDPKEITNLTYEEFKEFYYKNYNPKKVKVFFFSKNNPTELLNFVDQ 320 (1193)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHCTTSGGGSCTTCCHHHHTTCCHHHHHHHHHHHSCTTTCEEEEEESSCTHHHHHHHHH
T ss_pred HHHHHHhhCCHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHhhCCHHHHHHHHHHhcCccceEEEEEecCCHHHHHHHHHH
Confidence 99999999999999999999999987 9999999999999999999999999999999999999999 999999999999
Q ss_pred hhcCCCCCCCCC------CCCCccCCC-eeEe--e--CCCCceEEEEEeecCCC---CCC--------------------
Q 010516 278 LLSDLPSIHPRE------EPKSVYTGG-DYRC--Q--ADSGLTHFVLAFELPGG---WHK-------------------- 323 (508)
Q Consensus 278 ~~~~lp~~~~~~------~~~~~~~~~-~~~~--~--~~~~~~~v~~~~~~~~~---~~~-------------------- 323 (508)
+|+.|+..+.+. ...+...+. .... . .+.+++++.++|..|.. ..+
T Consensus 321 ~f~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~q~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~y~~~~ 400 (1193)
T 3s5m_A 321 YLGQLDYSKYRDDAVESVEYQTYKKGPFYIKKKYGDHSEEKENLVSVAWLLNPKVDKTNNHNNNHSNNQSSENNGYSNGS 400 (1193)
T ss_dssp HHTTCCGGGCCCCCCCCCCCCBCCCCCEEEEEEEECCCSSCCEEEEEEEESSCBCC----------------------CC
T ss_pred HhccCCCCCCCcccccccCCCCCCCCCeEEEEecCCCCCccccEEEEEEEecCccccccccccccccccccccccccccc
Confidence 999998654311 111222222 2222 1 34678999999998740 112
Q ss_pred ---------CcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEE-EeecCCCCcceEEEEE-EeCcc
Q 010516 324 ---------DKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFS-AFSNIYNHSGMFGIQG-TTGSD 392 (508)
Q Consensus 324 ---------~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~-a~~~~~~~~g~~~i~~-~~~p~ 392 (508)
.++.+++.||+.||+||.+ ||||+.||+ .|++|+++ ++.......+.|.|++ .++++
T Consensus 401 ~~~~~~~~~~~d~~al~vL~~iLggg~s-----------SrL~~~L~e-~gLa~~v~~~~~~~~~~~~~f~i~~~g~~~~ 468 (1193)
T 3s5m_A 401 HSSDLSLENPTDYFVLLIINNLLIHTPE-----------SVLYKALTD-CGLGNNVIDRGLNDSLVQYIFSIGLKGIKRN 468 (1193)
T ss_dssp CCSTTCCCSHHHHHHHHHHHHHHHSSTT-----------SHHHHHHHH-HCSCSEEEEEEEECSSSSCEEEEEEEEECTT
T ss_pred ccccccccCccHHHHHHHHHHHHCCCCC-----------CHHHHHHHh-cCCeeeecccccccccCCcEEEEEEecCChh
Confidence 4788999999999998744 999999997 59999997 5666566667888887 46554
Q ss_pred h--------H-HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHh-ccChHH--HHHHHHHHHHHcCCCCC---H
Q 010516 393 F--------V-SKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMN-LESRMV--VSEDIGRQVLTYGERKP---V 457 (508)
Q Consensus 393 ~--------~-~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~-~~s~~~--~~~~~~~~~~~~g~~~~---~ 457 (508)
+ + +++.+.+.++|+++.+ ++++++||+++|+++..++... ..++.. .+..+...++..|.+.. .
T Consensus 469 ~~~~~~~~~~~~~~~~~I~~~L~~l~~-~gi~~~ele~a~~~le~~~re~~~~~~~gl~~~~~~~~~w~~~~dp~~~l~~ 547 (1193)
T 3s5m_A 469 NEKIKNFDKVHYEVEDVIMNALKKVVK-EGFNKSAVEASINNIEFILKEANLKTSKSIDFVFEMTSKLNYNRDPLLIFEF 547 (1193)
T ss_dssp CTTCSCGGGHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHHHTTSTTHHHHHHHHHHHHHHTTCCTTTTTSH
T ss_pred hccccchhhHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 3 5 6899999999999998 7899999999999999988764 344443 34455666776777765 4
Q ss_pred HHHHHHHhcCC---HHHHHHHHHHHhc-CCc-eEEEEcCC
Q 010516 458 EHFLKTVEGVT---AKDIASVAQKLLS-SPL-TMASYGDV 492 (508)
Q Consensus 458 ~~~~~~i~~vT---~~Di~~~a~~~l~-~~~-~~~~~G~~ 492 (508)
++.++.++..+ ++++++++++||. ++. +++++-|.
T Consensus 548 ~~~l~~l~~~~~~~~~~~~~li~~yll~n~~~~~~~~~P~ 587 (1193)
T 3s5m_A 548 EKYLNIVKNKIKNEPMYLEKFVEKHFINNAHRSVILLEGD 587 (1193)
T ss_dssp HHHHHHHHHHHHHSTTHHHHHHHHHTTTCCCEEEEEEEEE
T ss_pred HHHHHHHHHHhhcChHHHHHHHHHHhccCCceEEEEEEcC
Confidence 55555555543 4599999999986 333 44444443
No 18
>1q2l_A Protease III; hydrolase; 2.20A {Escherichia coli str} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=2.4e-37 Score=348.56 Aligned_cols=411 Identities=9% Similarity=0.055 Sum_probs=326.7
Q ss_pred CCCCCCCCCCCCCCCC--C-CCCCCceEEEEcCCCcEEEEeeCC-C---CeEEEEEEEcccccCCCCCCCcHHHHHHHhh
Q 010516 56 SLDFPLPGVSLPPSLP--D-YVEPGKTKISTLPNGVKIASETSV-S---PVASISLYVGCGSIYESPISFGTTHLLERMA 128 (508)
Q Consensus 56 ~l~~pl~~~~~p~~~~--~-~~~~~~~~~~~L~NGl~v~~~~~~-~---~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~ 128 (508)
.+..|-++.++|.+.. . ......++.++|+||++||+++++ . |++.|.+.+.+|...+++...|+++|+..|+
T Consensus 474 ~~~~p~~n~~~~~~~~~~~~~~~~~~p~~~~l~ng~~v~~~~~~~f~~pp~~~i~l~~~~~~~~~~~~~~~~~~l~~~ll 553 (939)
T 1q2l_A 474 ALSLPELNPYIPDDFSLIKSEKKYDHPELIVDESNLRVVYAPSRYFASEPKADVSLILRNPKAMDSARNQVMFALNDYLA 553 (939)
T ss_dssp CCCCCCCCTTCCCCCCCCCCSSCCSSCEEEEEETTEEEEEECCSSCTTSSEEEEEEEEECGGGGSSHHHHHHHHHHHHHH
T ss_pred cccCCCCCcCCCcCcccccCcCCCCCCEEEEECCCceEeecCCCccCCCCcEEEEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 4555666666666531 1 122234578899999999998876 2 4999999999999998877889999999999
Q ss_pred ccCCCCCChHHHHHHHHHcCCeeEEeecceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhh-c
Q 010516 129 FRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEV-S 207 (508)
Q Consensus 129 ~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~-~ 207 (508)
..|+. ++....+..|.+++++. .+++.+++++.+++++.+|+++.+.+.+|.|++++|+++|+++++++++. .
T Consensus 554 ~~g~~-----~~~~~~~l~G~~~~~~~-~~g~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~l~~~~~ 627 (939)
T 1q2l_A 554 GLALD-----QLSNQASVGGISFSTNA-NNGLMVNANGYTQRLPQLFQALLEGYFSYTATEDQLEQAKSWYNQMMDSAEK 627 (939)
T ss_dssp HHHHH-----HHHHHHHHTTEEEEEEE-SSEEEEEEEEESSSHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHH-----HHhhHHHHcCcEEEEee-CCcEEEEEEcccHhHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhhh
Confidence 87654 33455666788888888 99999999999999999999999999999999999999999999999997 5
Q ss_pred CChHHHHHHHHHHHhcCCCCCCCCCCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHHHHhhhcCCCCCC
Q 010516 208 NNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSVAEPLLSDLPSIH 286 (508)
Q Consensus 208 ~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~~~~~~~~lp~~~ 286 (508)
++|..++.+.++..+|++ + ++..++.+.|++++.+++++|++++|.+.+++++++| +++++++++++++++.|+...
T Consensus 628 ~~p~~~a~~~l~~~l~~~-~-~~~~~~~~~l~~it~~~l~~f~~~~~~~~~~~~~vvGn~~~~~~~~l~~~~~~~l~~~~ 705 (939)
T 1q2l_A 628 GKAFEQAIMPAQMLSQVP-Y-FSRDERRKILPSITLKEVLAYRDALKSGARPEFMVIGNMTEAQATTLARDVQKQLGADG 705 (939)
T ss_dssp SCHHHHHHHHHHHTTSSS-C-CCHHHHHHHGGGCCHHHHHHHHHHHHTTCEEEEEEEESCCHHHHHHHHHHHHHHHTCCC
T ss_pred cChHHHHHHHHHHHhcCC-C-CCHHHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHccCC
Confidence 679999999999988864 3 4445678999999999999999999999999999999 999999999999998887543
Q ss_pred CCCCCC--CccCCC-eeE--eeCCCCceEE-EEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHH
Q 010516 287 PREEPK--SVYTGG-DYR--CQADSGLTHF-VLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRV 360 (508)
Q Consensus 287 ~~~~~~--~~~~~~-~~~--~~~~~~~~~v-~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~l 360 (508)
.+.... +...++ ... ...+..++.+ .+.|+.+. .+.++.+.+.+|+.++. ++||++|
T Consensus 706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lL~~~~~---------------s~lf~~L 768 (939)
T 1q2l_A 706 SEWCRNKDVVVDKKQSVIFEKAGNSTDSALAAVFVPTGY--DEYTSSAYSSLLGQIVQ---------------PWFYNQL 768 (939)
T ss_dssp SCCCCCEEECCCSCEEEEEEECCSSSCEEEEEEEECSSC--CHHHHHHHHHHHHHHHH---------------HHHTHHH
T ss_pred ccccccceEEeCCCceEEEecCCCCCCceeEEEEEecCC--CCHHHHHHHHHHHHHHH---------------HHHHHHH
Confidence 221111 111222 222 2333345555 56665543 34445555666666554 9999999
Q ss_pred HhhCCCeEEEEEeecCCC-Ccce-EEEEE-EeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccCh
Q 010516 361 LNEFPQVQSFSAFSNIYN-HSGM-FGIQG-TTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESR 437 (508)
Q Consensus 361 R~~~~~~Y~v~a~~~~~~-~~g~-~~i~~-~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~ 437 (508)
|++.|++|+|+++..... ..|. |.|+. .++|+++.++++.+.+++.++.. + ++++||+++|+.++.++....++.
T Consensus 769 Rek~gl~Y~v~s~~~~~~~~~g~~~~i~s~~~~p~~~~~~i~~~~~~~~~~~~-~-~t~~el~~~k~~l~~~~~~~~~s~ 846 (939)
T 1q2l_A 769 RTEEQLGYAVFAFPMSVGRQWGMGFLLQSNDKQPSFLWERYKAFFPTAEAKLR-A-MKPDEFAQIQQAVITQMLQAPQTL 846 (939)
T ss_dssp HTSCCSSSCEEEEEEEETTEEEEEEEEEESSSCHHHHHHHHHHHHHHHHHHHH-T-CCHHHHHHHHHHHHHHHTCCCSSH
T ss_pred HHHHHhCceeeeeEeecCCeeEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-h-CCHHHHHHHHHHHHHHhcCCCCCH
Confidence 999999999999876433 3342 55666 57899999999999999999886 4 999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHhcCCHHHHHHHHHHHhc--CCc--eEEEEcCCC
Q 010516 438 MVVSEDIGRQVLTYGERKP-VEHFLKTVEGVTAKDIASVAQKLLS--SPL--TMASYGDVI 493 (508)
Q Consensus 438 ~~~~~~~~~~~~~~g~~~~-~~~~~~~i~~vT~~Di~~~a~~~l~--~~~--~~~~~G~~~ 493 (508)
...+..+|..++..+..++ .+++.+.|++||++||++++++++. +.. ++.++|+..
T Consensus 847 ~~~~~~~w~~i~~~~~~~d~~~~~~~~i~~vT~~dv~~~a~~~l~~~~~~~l~v~v~G~~~ 907 (939)
T 1q2l_A 847 GEEASKLSKDFDRGNMRFDSRDKIVAQIKLLTPQKLADFFHQAVVEPQGMAILSQISGSQN 907 (939)
T ss_dssp HHHHHHHHHHHHHTCTTCCHHHHHHHHHHTCCHHHHHHHHHHHTTSCSSEEEEEEECCSSH
T ss_pred HHHHHHHHHHHhcCCCCCChHHHHHHHHhcCCHHHHHHHHHHHhcCCCCCEEEEEEecCCC
Confidence 9999999998886665555 6889999999999999999999876 333 456889863
No 19
>2fge_A Atprep2;, zinc metalloprotease (insulinase family); peptidasome, protease-peptide complex, hydrolase, plant protein; 2.10A {Arabidopsis thaliana} SCOP: d.185.1.1 d.185.1.1 d.185.1.1 d.185.1.1
Probab=100.00 E-value=7.6e-36 Score=337.94 Aligned_cols=393 Identities=10% Similarity=0.002 Sum_probs=312.7
Q ss_pred CceEEEEcCCCcEEEEeeCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcc-CCCCCChHHHHHHHHHcCCeeEE-
Q 010516 77 GKTKISTLPNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAFR-STRNRSHLRIVREVEAIGGNVQA- 153 (508)
Q Consensus 77 ~~~~~~~L~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~-gt~~~s~~~l~~~l~~~g~~~~~- 153 (508)
.+++.. +.||++|++++++ .+.+++.+++++|+. +++..+.++++.++++. ||++++..++.+.++...+.+++
T Consensus 552 ~~~~~~-~~nG~~v~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~Gt~~~s~~el~~~l~~~~ggl~~~ 628 (995)
T 2fge_A 552 VPTEVG-DINGVKVLRHDLFTNDIIYTEVVFDIGSL--KHELLPLVPLFCQSLLEMGTKDLTFVQLNQLIGRKTGGISVY 628 (995)
T ss_dssp CCCEEE-ESSSSEEEEEECCCSSEEEEEEEEECTTS--CTTTGGGHHHHHHHHHHSCCSSSCHHHHHHHHHHHSSEEEEE
T ss_pred CCceee-ecCCceEEEEecCCCCeEEEEEEeeCCCC--CHHHhhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhcCceEee
Confidence 344443 4899999998776 469999999999886 45678999999898875 99999999999999966555555
Q ss_pred ----eecc-----eeEEEEEEcccCChHHHHHHHHHhhhCCCCCHH-HHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHh
Q 010516 154 ----SASR-----EQMGYSFDALKTYVPEMVELLIDCVRNPVFLDW-EVNEQLTKVKSEISEVS-NNPQSLLLEAIHSAG 222 (508)
Q Consensus 154 ----~~~~-----~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~-~~~~~k~~~~~e~~~~~-~~p~~~~~~~l~~~~ 222 (508)
+++. +++.+++++++++++.+++++.+++++|.|+++ +|++++++++.++++.. +++..++...++..+
T Consensus 629 ~~~~~~~~~~~~~~~~~i~~~~l~~~l~~~l~ll~e~l~~p~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~A~~~~~~~~ 708 (995)
T 2fge_A 629 PLTSSVRGKDEPCSKIIVRGKSMAGRADDLFNLMNCLLQEVQFTDQQRFKQFVSQSRARMENRLRGSGHGIAAARMDAML 708 (995)
T ss_dssp EEEEEETTEEEEEEEEEEEEEEEGGGHHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTT
T ss_pred ccccccCccccccceEEEEEEEehhhHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHhC
Confidence 5544 899999999999999999999999999999999 99999999999999875 577777788887654
Q ss_pred cCC-CCCCCCC-----CCh--------HHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCH-HHHHHHHHhhhcCC-CCC
Q 010516 223 YSG-ALANPLL-----APE--------SAINRLNSTLLEEFVAENYTGPRMVLAASG-VEH-DQLVSVAEPLLSDL-PSI 285 (508)
Q Consensus 223 ~~~-~~~~~~~-----~~~--------~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~-e~l~~~~~~~~~~l-p~~ 285 (508)
.++ ++..... +.. +.++.+ .++|++||+++|++++|+++++| +++ +++.++++++|+.+ |..
T Consensus 709 ~~~~~~~~~~~gl~~~~~~~~l~~~~~e~~~~i-~~~L~~~~~~~~~~~~~~~~v~Gd~~~~~~~~~~~~~~~~~l~p~~ 787 (995)
T 2fge_A 709 NIAGWMSEQMGGLSYLEFLHTLEKKVDEDWEGI-SSSLEEIRRSLLARNGCIVNMTADGKSLTNVEKSVAKFLDLLPENP 787 (995)
T ss_dssp CHHHHHHHHHHSHHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHCCSTTCEEEEEECHHHHHHHHHHHHHHHHTSCSSC
T ss_pred ChhHHHHHHHccHHHHHHHHHHHHhhhcCHHHH-HHHHHHHHHHHcCcCCcEEEEEeCHHHHHHHHHHHHHHHHhhCccC
Confidence 433 3322111 111 457889 99999999999999999999999 995 99999999999999 754
Q ss_pred CCCCCCCCccCCCe-e-EeeCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhh
Q 010516 286 HPREEPKSVYTGGD-Y-RCQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNE 363 (508)
Q Consensus 286 ~~~~~~~~~~~~~~-~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~ 363 (508)
..+..+. .++.+. . ....+....++..++.... .++++.+++.|++.||++ ++||++||+
T Consensus 788 ~~~~~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~d~~al~vl~~iLg~--------------~~L~~~iRe- 849 (995)
T 2fge_A 788 SGGLVTW-DGRLPLRNEAIVIPTQVNYVGKAGNIYS--TGYELDGSAYVISKHISN--------------TWLWDRVRV- 849 (995)
T ss_dssp SSCSCCC-CCCCCCCCEEEECSCSSBEEEEEEEGGG--GTCCCCTHHHHHHHHHHH--------------THHHHHTTT-
T ss_pred CCCCCcc-cccCCccceEEEecCceEEEEEecCCCC--CCCcccHHHHHHHHHHCC--------------CccHHHhhh-
Confidence 4332111 111111 1 1233345556665665544 377999999999999985 699999999
Q ss_pred CCCeEEEEEeecCCCCcceEE-EEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHH
Q 010516 364 FPQVQSFSAFSNIYNHSGMFG-IQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSE 442 (508)
Q Consensus 364 ~~~~Y~v~a~~~~~~~~g~~~-i~~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~ 442 (508)
.|++|+++++... .|.|+ ++...+| +..++++.+.+.++.+.+ +++|++||+++|.++++++ ....++...+.
T Consensus 850 ~g~aYg~~s~~~~---~G~~~~~~s~~dp-~~~~~~~~~~~~~~~l~~-~~~te~el~~ak~~li~~~-~~~~~~~~~~~ 923 (995)
T 2fge_A 850 SGGAYGGFCDFDS---HSGVFSYLSYRDP-NLLKTLDIYDGTGDFLRG-LDVDQETLTKAIIGTIGDV-DSYQLPDAKGY 923 (995)
T ss_dssp TTCCSEEEEEEET---TTTEEEEEEESBS-CSHHHHHHHHTHHHHHHT-CCCCHHHHHHHHHHHHHHH-TCCCCHHHHHH
T ss_pred cCCCcccceEeCC---CccEEEEEEEcCC-CHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhc-cCCCCHHHHHH
Confidence 7889999998764 48888 8888888 578888888888888876 6799999999999999998 45677787887
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHhcCCHHHHHHHHHHHhc--CCceEEEEcCCCCCCCH
Q 010516 443 DIGRQVLTYGERK-PVEHFLKTVEGVTAKDIASVAQKLLS--SPLTMASYGDVINVPSY 498 (508)
Q Consensus 443 ~~~~~~~~~g~~~-~~~~~~~~i~~vT~~Di~~~a~~~l~--~~~~~~~~G~~~~~p~~ 498 (508)
..+..++ .|.+. ..+++.+.|.+||++||+++|++|+. .+.+++++|+...+++.
T Consensus 924 ~~~~~~~-~g~~~~~~~~~~~~i~~vT~edv~~~a~~~~~~~~~~~~~vvG~~~~i~~~ 981 (995)
T 2fge_A 924 SSLLRHL-LGVTDEERQRKREEILTTSLKDFKDFAQAIDVVRDKGVAVAVASAEDIDAA 981 (995)
T ss_dssp HHHHHHH-TTCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHCEEEEEECHHHHHHH
T ss_pred HHHHHHH-cCcCHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhccCCEEEECCHHHHHhh
Confidence 7776665 56543 46888999999999999999999997 48889999987665554
No 20
>3cww_A Insulysin, insulin-degrading enzyme, insulinase; A-beta degrading enzyme, criptidase, kinins, hydrolase; 1.96A {Homo sapiens} PDB: 3ofi_A 2wc0_A 3h44_A 3n56_A 3n57_A 2wby_A 3qz2_A 3e4z_A 2wk3_A 3e4a_A* 2g47_A 2g48_A 2g49_A 2g54_A 2g56_A 2jbu_A 3e50_A 2jg4_A 3hgz_A 2yb3_A* ...
Probab=100.00 E-value=3.9e-34 Score=323.93 Aligned_cols=414 Identities=9% Similarity=0.048 Sum_probs=328.3
Q ss_pred CCCCCCCCCCCCCCCCC---C-CCCCceEEEEcCCCcEEEEeeCC---CCeEEEEEEEcccccCCCCCCCcHHHHHHHhh
Q 010516 56 SLDFPLPGVSLPPSLPD---Y-VEPGKTKISTLPNGVKIASETSV---SPVASISLYVGCGSIYESPISFGTTHLLERMA 128 (508)
Q Consensus 56 ~l~~pl~~~~~p~~~~~---~-~~~~~~~~~~L~NGl~v~~~~~~---~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~ 128 (508)
.+..|-++.++|.++.. . .....+..++++||++||+++++ .|...+.+.+.+|...+++...++++|+..|+
T Consensus 492 ~~~~p~~~~~ip~~~~~~~~~~~~~~~p~~~~~~ng~~v~~~~~~~f~~P~~~i~~~~~~~~~~~~~~~~~~~~L~~~ll 571 (990)
T 3cww_A 492 KFKLPTKNEFIPTNFEILPLEAAATPYPALIKDTAMSKLWFKQDDKFFLPKANLNFEFFSPFAYVDPLHSNMAYLYLELL 571 (990)
T ss_dssp TCCCCCCCTTCCCCCCCCCCCTTCCSSCEEEEECSSEEEEEEECSSCCCSEEEEEEEEECGGGTSSHHHHHHHHHHHHHH
T ss_pred cccCCCCCCCCCcccccccCCCCCCCCCeeeecCCCceEeeccCCccCCCcEEEEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 35556666666665321 1 12234577889999999998766 46888888888888888878889999999998
Q ss_pred ccCCCCCChHHHHHHHHHcCCeeEEeecceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHHHHHHHHHHHHHHHhhcC
Q 010516 129 FRSTRNRSHLRIVREVEAIGGNVQASASREQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWEVNEQLTKVKSEISEVSN 208 (508)
Q Consensus 129 ~~gt~~~s~~~l~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~~~~~k~~~~~e~~~~~~ 208 (508)
..+ ++..++...+ .|++++++++.+++.+++++++++++.+|+++.+.+.+|.|++++|+++|++++..+++...
T Consensus 572 ~~~---~~~~~~~~~l--~G~~~~~~~~~~~~~~~~~g~~~~l~~~l~ll~~~l~~p~~~~~~f~~~k~~~~~~~~~~~~ 646 (990)
T 3cww_A 572 KDS---LNEYAYAAEL--AGLSYDLQNTIYGMYLSVKGYNDKQPILLKKIIEKMATFEIDEARFEIIKEAYMRSLNNFRA 646 (990)
T ss_dssp HHH---HHHHHHHHHH--TTEEEEEEEETTEEEEEEEEESTTHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHGGG
T ss_pred HHH---HHHhhhHHHh--CCeEEEEEEcCCeEEEEEEeccHhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 653 2334443333 68899999999999999999999999999999999999999999999999999999999776
Q ss_pred -ChHHHHHHHHHHHhcCCCCCCCCCCChHHhccCCHHHHHHHHHhhcCCCCeEEEEcC-CCHHHHHHH---HHhhhcCCC
Q 010516 209 -NPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLEEFVAENYTGPRMVLAASG-VEHDQLVSV---AEPLLSDLP 283 (508)
Q Consensus 209 -~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~~e~l~~~---~~~~~~~lp 283 (508)
+|..++...+...+++.++.. .++.+.|++|+.++|.+|++++|.+.+++++++| ++.+++.++ ++++|+.+|
T Consensus 647 ~~p~~~a~~~~~~~l~~~~~~~--~~~~~~l~~lt~~~l~~~~~~~~~~~~~~~~v~Gn~~~~~~~~~~~~~~~~l~~l~ 724 (990)
T 3cww_A 647 EQPHQHAMYYLRLLMTEVAWTK--DELKEALADVTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIMQMVEDTLIEHA 724 (990)
T ss_dssp SCHHHHHHHHHHHHHBSSCCCH--HHHHHHHTTCCHHHHHHHHHHHHHEEEEEEEEEESCCHHHHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHhCCCCCCH--HHHHHHHhcCCHHHHHHHHHHHHhhheEEEEEEcCCCHHHHHHHHHHHHHHHhccC
Confidence 899999999999888544432 3467899999999999999999999999999999 999999888 677887665
Q ss_pred CCCCCC------CCCCccC-CCeeEe---eCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcc
Q 010516 284 SIHPRE------EPKSVYT-GGDYRC---QADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMY 353 (508)
Q Consensus 284 ~~~~~~------~~~~~~~-~~~~~~---~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~ 353 (508)
...... ....... +....+ .++..++.+.+.+..+. .+.++.+++.|+++||+
T Consensus 725 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~l~ll~~il~--------------- 787 (990)
T 3cww_A 725 HTKPLLPSQLAAYREVQLPDRGWFVYQQRNEVHNNSGIEIYYQTDM--QSTSENMFLELFAQIIS--------------- 787 (990)
T ss_dssp CCEECCGGGCCCCCBBCCCTTEEEEEEEECSSCSSEEEEEEEEEEE--CCHHHHHHHHHHHHHHH---------------
T ss_pred CCCCCchhhccccceEEcCCCCeEEEEecCCCCCCcEEEEEEeCCC--CCHHHHHHHHHHHHHHH---------------
Confidence 331111 0111112 222222 33456777777777654 46789999999999997
Q ss_pred cHHHHHHHhhCCCeEEEEEeecCCCCcceEEE--EEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHH
Q 010516 354 SRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGI--QGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAIL 431 (508)
Q Consensus 354 s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~i--~~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~ 431 (508)
++||++||++.|++|++++......+...|.+ +..++|+++.++++.+.+++..+++ + ++++||+++|.++++++.
T Consensus 788 ~~lf~~LRek~~lgY~v~s~~~~~~g~~~~~~~vqs~~dp~~~~~~i~~f~~~~~~l~~-~-~te~el~~~k~~li~~~~ 865 (990)
T 3cww_A 788 EPAFNTLRTKEQLGYIVFSGPRRANGIQGLRFIIQSEKPPHYLESRVEAFLITMEKSIE-D-MTEEAFQKHIQALAIRRL 865 (990)
T ss_dssp HHHHHHHTTTTCCCSEEEEEEEEETTEEEEEEEEEESSCHHHHHHHHHHHHHHHHHHHH-H-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCcEEEEEEEEeeCCEEEEEEEEeCCCCHHHHHHHHHHHHHHHHHHHH-h-cCHHHHHHHHHHHHHHhc
Confidence 99999999999999999998765444433333 4456799999999999999999987 4 999999999999999999
Q ss_pred HhccChHHHHHHHHHHHHHcCCCCC-HHHHHHHHhcCCHHHHHHHHHHHhc------CCceEEEEcCCCCC
Q 010516 432 MNLESRMVVSEDIGRQVLTYGERKP-VEHFLKTVEGVTAKDIASVAQKLLS------SPLTMASYGDVINV 495 (508)
Q Consensus 432 ~~~~s~~~~~~~~~~~~~~~g~~~~-~~~~~~~i~~vT~~Di~~~a~~~l~------~~~~~~~~G~~~~~ 495 (508)
...+++......+|..++.++...+ .+++.+.|++||++||++++++++. .+.+++++|+....
T Consensus 866 ~~~~~~~~~~~~~~~~i~~~~~~~d~~~~~~~~i~~vT~~di~~~a~~~l~~~~~~~~~~~v~v~g~~~~~ 936 (990)
T 3cww_A 866 DKPKKLSAESAKYWGEIISQQYNFDRDNTEVAYLKTLTKADIIKFYKEMLAVDAPRRHKVSVHVLAREMDS 936 (990)
T ss_dssp CCCSSHHHHHHHHHHHHHTTCCCTTHHHHHHHHHTTCCHHHHHHHHHHHTSTTCTTCEEEEEEEECTTC--
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCChHHHHHHHHHhCCHHHHHHHHHHHhhccCCCCCEEEEEEECCCCcc
Confidence 9999999999999998875554554 5888999999999999999999986 35779999987654
No 21
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=99.97 E-value=6.7e-30 Score=287.11 Aligned_cols=382 Identities=13% Similarity=0.075 Sum_probs=287.2
Q ss_pred CCCcEEEEeeCC-CCeEEEEEEEcccccCCCCCCCcHHHHHHHhhc-cCCCCCChHHHHHHHHHcCCeeEEeec------
Q 010516 85 PNGVKIASETSV-SPVASISLYVGCGSIYESPISFGTTHLLERMAF-RSTRNRSHLRIVREVEAIGGNVQASAS------ 156 (508)
Q Consensus 85 ~NGl~v~~~~~~-~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~-~gt~~~s~~~l~~~l~~~g~~~~~~~~------ 156 (508)
.||++|++.+.+ ++.+++.++++.|... .+..++..|+..++. .||++++..++...++.++|+++++++
T Consensus 724 ~~gv~v~~~~~~TNGIvY~~l~fdl~~l~--~e~l~yl~Lf~~~L~~lGT~~~sy~el~~~i~~~tGGis~s~~~~~~~~ 801 (1193)
T 3s5m_A 724 EGNVPILVYEMPTTGIVYLQFVFSLDHLT--VDELAYLNLFKTLILENKTNKRSSEDFVILREKNIGSMSANVALYSKDD 801 (1193)
T ss_dssp TTCEEEEEEECCCTTEEEEEEEEECTTCC--HHHHTTHHHHHHHTTTCCBSSSCHHHHHHHHHHHCSEEEEEEEEECCCB
T ss_pred cCCeEEEEEECCCCCeEEEEEEEECCCCC--HHHHhhHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCceEEEeeeecccc
Confidence 489999987766 4699999999999755 356677788877765 599999999999999999998888763
Q ss_pred ----------ceeEEEEEEcccCChHHHHHHHHHhhhCCCCCHHH-HHHHHHHHHHHHHh-hcCChHHHHHHHHHHHhcC
Q 010516 157 ----------REQMGYSFDALKTYVPEMVELLIDCVRNPVFLDWE-VNEQLTKVKSEISE-VSNNPQSLLLEAIHSAGYS 224 (508)
Q Consensus 157 ----------~~~~~~~~~~~~~~l~~~l~ll~~~~~~p~f~~~~-~~~~k~~~~~e~~~-~~~~p~~~~~~~l~~~~~~ 224 (508)
..++.+++.++.++++++++++.+++.+|+|++.+ ++..+++.+..+.+ ...+...++...+.+.+.+
T Consensus 802 ~~~~~~~~~~~~~~~vs~kaL~~n~~~~~~Ll~eiL~~~~F~d~eRlk~ll~~~ks~le~~i~~sGH~~A~~ra~s~~s~ 881 (1193)
T 3s5m_A 802 HLNVTDKYNAQALFNLEMHVLSHKCNDALNIALEAVKESDFSNKKKVIDILKRKINGMKTTFSEKGYAILMKYVKAHLNS 881 (1193)
T ss_dssp TTBCCCTTCCEEEEEEEEEEEGGGHHHHHHHHHHHHHSBCTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTTTTCH
T ss_pred cccccccccccceEEEEEEEhhhcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHhcCc
Confidence 34578999999999999999999999999999864 77777777777766 3455555666555554432
Q ss_pred C-CCCCCCCCChHH--------------hccCCHHHHHHHHHhhcCCCCeEEEEcC-CC-HHHHHHHHHhhhcCCCC---
Q 010516 225 G-ALANPLLAPESA--------------INRLNSTLLEEFVAENYTGPRMVLAASG-VE-HDQLVSVAEPLLSDLPS--- 284 (508)
Q Consensus 225 ~-~~~~~~~~~~~~--------------l~~l~~~~l~~f~~~~~~~~~~~l~i~G-v~-~e~l~~~~~~~~~~lp~--- 284 (508)
. ++.....| .+. ++.| .++|++++++.|+++++++.++| .+ .+++.+.++++++.|+.
T Consensus 882 ~~~~~e~~~G-l~~~~fl~~l~~~~e~~~~~l-~~~L~~i~~~if~~~nl~vsvtg~~~~~~~~~~~l~~~l~~l~~~~~ 959 (1193)
T 3s5m_A 882 KHYAHNIIYG-YENYLKLQEQLELAENDFKTL-ENILVRIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFE 959 (1193)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHHHHHCHHHH-HHHHHHHHHHHSCSTTEEEEEEECGGGTHHHHTTTHHHHHHHHHHHH
T ss_pred chhhhhhhCC-hHHHHHHHHHHHhhHhhHHHH-HHHHHHHHHHHcCCCCeEEEEEeChhhHHHHHHHHHHHHHhhhhccc
Confidence 2 22222112 112 2223 67999999999999999999999 75 47777766666655531
Q ss_pred -CCC----------CC-CC--------CCcc-C-CCe-eEeeCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCC
Q 010516 285 -IHP----------RE-EP--------KSVY-T-GGD-YRCQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGG 341 (508)
Q Consensus 285 -~~~----------~~-~~--------~~~~-~-~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~ 341 (508)
... .. .. ...+ . ... ..+..+.+..+++.++.... .++++++++.|++.|||+
T Consensus 960 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~p~~v~yv~~~~~~~~--~~~~d~~al~Vl~~iLg~-- 1035 (1193)
T 3s5m_A 960 ENDKYINDMQNKVNDPTVMGWNEEIKSKKLFDEEKVKKEFFVLPTFVNSVSMSGILFK--PGEYLDPSFTVIVAALKN-- 1035 (1193)
T ss_dssp HGGGGSCCCCSSSCCCCCCCHHHHHHHTTCCCTTCCEEEEEECCCSSBEEEEEEECSC--TTCBCCTHHHHHHHHHHH--
T ss_pred cccccccccccccccccccccccccccccccccccccceeEecCCcceEEEEEecCCC--CCCCchHHHHHHHHHHCc--
Confidence 000 00 00 0001 1 111 22556778899999988766 678999999999999994
Q ss_pred CCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcceEEEEEEeCcchHHHHHHHHHHHHHHhhCC-CCCCHHHHH
Q 010516 342 SFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGIQGTTGSDFVSKAIDLAARELISVATP-GEVDQVQLD 420 (508)
Q Consensus 342 s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~i~~~~~p~~~~~~~~~~~~~l~~l~~~-~~i~~~el~ 420 (508)
++||++||++.| +|+++++.. ..|.|.++...+| +..+.++.+.+++..+.+- +++|++||+
T Consensus 1036 ------------~~L~~eIREkgG-AYg~~s~~~---~~G~f~~~syrdp-~~~~tl~~~~~~~~~l~~~~~~~teeEL~ 1098 (1193)
T 3s5m_A 1036 ------------SYLWDTVRGLNG-AYGVFADIE---YDGSVVFLSARDP-NLEKTLATFRESAKGLRKMADTMTENDLL 1098 (1193)
T ss_dssp ------------THHHHHHTTTTC-CSEEEEEEC---TTSEEEEEEESBS-CSHHHHHHHHTHHHHHHHHHHHCCHHHHH
T ss_pred ------------cHHHHHHHhcCC-eeEEEEecc---CCCcEEEEEEeCC-CHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Confidence 799999999876 999999876 5688888888887 4677888887766665530 259999999
Q ss_pred HHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCC-CHHHHHHHHhcCCHHHHHHHHHHHhcC----CceEEEEcCCC
Q 010516 421 RAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERK-PVEHFLKTVEGVTAKDIASVAQKLLSS----PLTMASYGDVI 493 (508)
Q Consensus 421 ~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~-~~~~~~~~i~~vT~~Di~~~a~~~l~~----~~~~~~~G~~~ 493 (508)
+||.++++++. ...++...+...+...+ +|.+. ..+++.+.|.+||++||+++|++|+.. +.+++++|+..
T Consensus 1099 ~ak~~~~~~~d-~p~~p~~~a~~~~~~~~-~Gl~~d~~~~~~~~I~aVT~edv~~vA~~~~~~l~~~~~~~vvvG~~~ 1174 (1193)
T 3s5m_A 1099 RYIINTIGTID-KPRRGIELSKLSFLRLI-SNESEQDRVEFRKRIMNTKKEDFYKFADLLESKVNEFEKNIVIITTKE 1174 (1193)
T ss_dssp HHHHHHHHHHS-CCCCTHHHHHHHHHHHH-TTCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHTHHHHTTEEEEEECHH
T ss_pred HHHHHHHhccc-ccCChHHHHHHHHHHHH-cCcCHHHHHHHHHHHHcCCHHHHHHHHHHHhhhhcccCceEEEEcCHH
Confidence 99999999975 56677777777776665 77665 478999999999999999999999973 68899999853
No 22
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=99.91 E-value=2.8e-23 Score=189.79 Aligned_cols=175 Identities=17% Similarity=0.156 Sum_probs=156.4
Q ss_pred eeCCCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcc
Q 010516 302 CQADSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSG 381 (508)
Q Consensus 302 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g 381 (508)
+..+.+++++.++|.+|. .++++.+++.|++.||+|| +++|||++||++ |++|+++++...+.+.|
T Consensus 18 ~~~~~~~~~v~~~~~~~~--~~~~d~~al~vl~~iLggg-----------~sSrL~~~lre~-gl~y~~~~~~~~~~~~g 83 (197)
T 3ih6_A 18 LRRAGGTPLVAAMYHLPA--AGSPDFVGLDLAATILADT-----------PSSRLYHALVPT-KLASGVFGFTMDQLDPG 83 (197)
T ss_dssp ----CCSCEEEEEEECCC--TTSTTHHHHHHHHHHHHSS-----------TTSHHHHHHTTT-TSCSEEEEEEETTSSSC
T ss_pred EECCCCCceEEEEEecCC--CCCCcHHHHHHHHHHHcCC-----------CCchHHHHHHhc-CceEEEEeccccccCCe
Confidence 455678999999999997 4678999999999999976 449999999986 99999999888788899
Q ss_pred eEEEEEEeCcc-hHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCCHHHH
Q 010516 382 MFGIQGTTGSD-FVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHF 460 (508)
Q Consensus 382 ~~~i~~~~~p~-~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~ 460 (508)
.|.|++.++|+ +.+++++.+.+++.++.+ ++++++||+++|+.++.++....+++..++..++.+++ +|.+.+..++
T Consensus 84 ~~~i~~~~~~~~~~~~~~~~i~~~l~~l~~-~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~-~g~~~~~~~~ 161 (197)
T 3ih6_A 84 LAMFGAQLQPGMDQDKALQTLTATLESLSS-KPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIA-SGDWRLFFLQ 161 (197)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHHCTTT-SCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHH-TTCTTHHHHH
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH-cCCHHHHHHH
Confidence 99999999998 599999999999999998 78999999999999999999999999999999998887 5766667889
Q ss_pred HHHHhcCCHHHHHHHHHHHhc-CCceEEEEcCC
Q 010516 461 LKTVEGVTAKDIASVAQKLLS-SPLTMASYGDV 492 (508)
Q Consensus 461 ~~~i~~vT~~Di~~~a~~~l~-~~~~~~~~G~~ 492 (508)
.+.|++||++||++++++||. ++.++++++|.
T Consensus 162 ~~~i~~vT~~dv~~~a~~~l~~~~~~~~~~~P~ 194 (197)
T 3ih6_A 162 RDRVREAKLDDVQRAAVAYLVRSNRTEGRYIPT 194 (197)
T ss_dssp HHHHHTCCHHHHHHHHHHHSSGGGCEEEEECC-
T ss_pred HHHHHhCCHHHHHHHHHHhCCccCeEEEEEeCC
Confidence 999999999999999999998 88888999875
No 23
>3ih6_A Putative zinc protease; bordetella pertussis tohama I, struc genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 2.15A {Bordetella pertussis} PDB: 3ivl_A
Probab=98.28 E-value=2.1e-05 Score=70.60 Aligned_cols=160 Identities=5% Similarity=-0.060 Sum_probs=111.7
Q ss_pred CeEEEEEEEcccccCCCCCCCcHHHHHHHhhccCCCCCChHHHHHHHHHcCCeeEEeec------ceeEEEEEEcccC-C
Q 010516 98 PVASISLYVGCGSIYESPISFGTTHLLERMAFRSTRNRSHLRIVREVEAIGGNVQASAS------REQMGYSFDALKT-Y 170 (508)
Q Consensus 98 ~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~gt~~~s~~~l~~~l~~~g~~~~~~~~------~~~~~~~~~~~~~-~ 170 (508)
+...+.+.+.+..... .+.....++..++..|.. ..|.+.+...|..+++++. ...+.+.+.+.++ +
T Consensus 23 ~~~~v~~~~~~~~~~~--~d~~al~vl~~iLggg~s----SrL~~~lre~gl~y~~~~~~~~~~~~g~~~i~~~~~~~~~ 96 (197)
T 3ih6_A 23 GTPLVAAMYHLPAAGS--PDFVGLDLAATILADTPS----SRLYHALVPTKLASGVFGFTMDQLDPGLAMFGAQLQPGMD 96 (197)
T ss_dssp CSCEEEEEEECCCTTS--TTHHHHHHHHHHHHSSTT----SHHHHHHTTTTSCSEEEEEEETTSSSCEEEEEEECCTTSC
T ss_pred CCceEEEEEecCCCCC--CcHHHHHHHHHHHcCCCC----chHHHHHHhcCceEEEEeccccccCCeEEEEEEEECCCCC
Confidence 4445555555554433 345667778888765432 3555555445654444332 2346666777676 6
Q ss_pred hHHHHHHHHHhhhCC---CCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCCCCCCCChHHhccCCHHHHH
Q 010516 171 VPEMVELLIDCVRNP---VFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAGYSGALANPLLAPESAINRLNSTLLE 247 (508)
Q Consensus 171 l~~~l~ll~~~~~~p---~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~~~l~ 247 (508)
++++++.+...+.+. -+++++|++.|..+...+....+++...+.......+++.+. ......+.|+++|.+|+.
T Consensus 97 ~~~~~~~i~~~l~~l~~~~it~~el~~ak~~~~~~~~~~~~~~~~~a~~l~~~~~~g~~~--~~~~~~~~i~~vT~~dv~ 174 (197)
T 3ih6_A 97 QDKALQTLTATLESLSSKPFSQEELERARSKWLTAWQQTYADPEKVGVALSEAIASGDWR--LFFLQRDRVREAKLDDVQ 174 (197)
T ss_dssp HHHHHHHHHHHHHCTTTSCCCHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHTTCTT--HHHHHHHHHHTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHhCCHHHHH
Confidence 898888887777553 489999999999999999988888888887777666653221 111235789999999999
Q ss_pred HHHHhhcCCCCeEEEEcC
Q 010516 248 EFVAENYTGPRMVLAASG 265 (508)
Q Consensus 248 ~f~~~~~~~~~~~l~i~G 265 (508)
++.++++.+.+.+++++|
T Consensus 175 ~~a~~~l~~~~~~~~~~~ 192 (197)
T 3ih6_A 175 RAAVAYLVRSNRTEGRYI 192 (197)
T ss_dssp HHHHHHSSGGGCEEEEEC
T ss_pred HHHHHhCCccCeEEEEEe
Confidence 999999999999988887
No 24
>3amj_B Zinc peptidase inactive subunit; alpha/beta, zinc binding, hydrolase; 3.00A {Sphingomonas}
Probab=97.96 E-value=0.00024 Score=71.63 Aligned_cols=173 Identities=9% Similarity=0.032 Sum_probs=112.0
Q ss_pred CCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcceEEE
Q 010516 306 SGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFGI 385 (508)
Q Consensus 306 ~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~i 385 (508)
.+...+.+.+..+.............++..++..|.. ..+| .+...=+.+..+..|..+++ +... ....+
T Consensus 23 ~~~~~~~l~~~~Gs~~e~~~~~g~ahlle~~l~~Gt~--~~~~--~~~~~~~~~~l~~~G~~~~a--~t~~----~~t~~ 92 (424)
T 3amj_B 23 LPMLDVQVDFDAGSAREPADQVGVASMTASLMDAGTG--SGKS--ALDENAIADRLADIGARLGG--GAEA----DRASF 92 (424)
T ss_dssp SSEEEEEEEESCSGGGSCTTSTTHHHHHHHTGGGEEC--STTS--CEEHHHHHHHHHHTTCEEEE--EECS----SCEEE
T ss_pred CCEEEEEEEEecCCccCCCccchHHHHHHHHHHhccC--CCcc--CCCHHHHHHHHHHhCCEEEe--ecCC----CeEEE
Confidence 4566667777665411122345667788888754210 0000 11122233444555654444 3321 13556
Q ss_pred EEEeCcchH--HHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCC-HHHHHH
Q 010516 386 QGTTGSDFV--SKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKP-VEHFLK 462 (508)
Q Consensus 386 ~~~~~p~~~--~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~-~~~~~~ 462 (508)
++.+.+++. +++++.+.+.+... .++++++++.|..++..+....+++...+.......+..+.+.. .. ..+
T Consensus 93 ~~~~~~~~~~l~~~l~ll~~~~~~p----~f~~~~~~~e~~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~-~~~ 167 (424)
T 3amj_B 93 SLRVLSSPAERNSALTILRDILAHP----TFPAPVLERERARAIAGLREAQTQPGSILGRRFTELAYGKHPYGHVS-SVA 167 (424)
T ss_dssp EEEEESSHHHHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHTTSGGGCCC-CHH
T ss_pred EEEEeccccChhHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHhcCCCCCCCCCC-CHH
Confidence 677777776 77777777766542 39999999999999999988878888777666666654443321 11 467
Q ss_pred HHhcCCHHHHHHHHHHHhc-CCceEEEEcCCC
Q 010516 463 TVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 493 (508)
Q Consensus 463 ~i~~vT~~Di~~~a~~~l~-~~~~~~~~G~~~ 493 (508)
.|+++|.+|++++.++++. ++.+++++||..
T Consensus 168 ~l~~it~~~l~~f~~~~y~~~~~~l~v~Gd~~ 199 (424)
T 3amj_B 168 TLQKISRDQLVSFHRTHYVARTAVVTLVGDIT 199 (424)
T ss_dssp HHHHCCHHHHHHHHHHHSCTTSCEEEEEESCC
T ss_pred HHHhCCHHHHHHHHHHhcCCCceEEEEEeCCC
Confidence 7899999999999999998 999999999874
No 25
>3hdi_A Processing protease; CAGE structure, M16B peptidase, metallopeptidase, peptidasome, protease, hydrolase; 2.70A {Bacillus halodurans c-125}
Probab=97.86 E-value=0.00054 Score=68.98 Aligned_cols=168 Identities=10% Similarity=0.072 Sum_probs=114.6
Q ss_pred CCCceEEEEEeecCCCCCCCc--chHHHHHHHHhcCCCCCCCCCCCCCCcc-cHHHHHHHhhCCCeEEEEEeecCCCCcc
Q 010516 305 DSGLTHFVLAFELPGGWHKDK--DAMTLTVLQMLLGGGGSFSAGGPGKGMY-SRLYRRVLNEFPQVQSFSAFSNIYNHSG 381 (508)
Q Consensus 305 ~~~~~~v~~~~~~~~~~~~~~--~~~~~~vl~~lL~~~~s~~~g~pg~g~~-s~L~~~lR~~~~~~Y~v~a~~~~~~~~g 381 (508)
..+...+.+.|.... ..++ ......++..++..|.. .+. ..+.+.+ +..|.... ++... +
T Consensus 20 ~~~~~~~~l~~~~Gs--~~e~~~~~G~ah~leh~lf~gt~--------~~~~~~~~~~l-~~~G~~~n--a~t~~--d-- 82 (421)
T 3hdi_A 20 TVRSVSIGIWVGTGS--RYESAEENGISHFLEHMFFKGTN--------TRSAQEIAEFF-DSIGGQVN--AFTSK--E-- 82 (421)
T ss_dssp TCSEEEEEEEESCCG--GGCCGGGTTHHHHHHHHTTSBBS--------SSBHHHHHHHH-HTTTSCEE--EEECS--S--
T ss_pred CCCEEEEEEEEcccc--CCCCCCCCcHHHHHHHHhcCCCC--------CCCHHHHHHHH-HHhCCcee--eeecc--c--
Confidence 345667777776654 3332 24466677777765421 111 1344444 44554443 33331 1
Q ss_pred eEEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCC--CHHH
Q 010516 382 MFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERK--PVEH 459 (508)
Q Consensus 382 ~~~i~~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~--~~~~ 459 (508)
...+++.+.+++.+++++.+.+.+..- .++++++++.|..++..+....+++...+.......+..+.+. +.--
T Consensus 83 ~t~~~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G 158 (421)
T 3hdi_A 83 YTCYYAKVLDDHAGQAIDTLSDMFFHS----TFQKEELEKERKVVFEEIKMVDDTPDDIVHDLLSSATYGKHSLGYPILG 158 (421)
T ss_dssp CEEEEEEEEGGGHHHHHHHHHHHHHSB----CCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTSGGGSCTTC
T ss_pred eEEEEEEecHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCCCCCCCCCcC
Confidence 245667777888888888888776553 3999999999999999999988888888777666666444332 2222
Q ss_pred HHHHHhcCCHHHHHHHHHHHhc-CCceEEEEcCCC
Q 010516 460 FLKTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 493 (508)
Q Consensus 460 ~~~~i~~vT~~Di~~~a~~~l~-~~~~~~~~G~~~ 493 (508)
..+.|+++|.+|++++.++++. ++.+++++|+..
T Consensus 159 ~~~~l~~it~~~l~~f~~~~y~p~n~~l~v~Gd~~ 193 (421)
T 3hdi_A 159 TVETLNSFNEGMLRHYMDRFYTGDYVVISVAGNVH 193 (421)
T ss_dssp CHHHHHHCCHHHHHHHHHHHSSTTTEEEEEEESCC
T ss_pred CHHHHHhCCHHHHHHHHHHhcCcccEEEEEEeCCC
Confidence 4577899999999999999999 999999999875
No 26
>3eoq_A Putative zinc protease; two similar domains of beta(2)-alpha(2)-beta(2)-alpha(5)- beta structure, hydrolase; 2.29A {Thermus thermophilus}
Probab=97.84 E-value=0.00097 Score=66.81 Aligned_cols=167 Identities=12% Similarity=0.114 Sum_probs=113.7
Q ss_pred CCCceEEEEEeecCCCCCCCc--chHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcce
Q 010516 305 DSGLTHFVLAFELPGGWHKDK--DAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGM 382 (508)
Q Consensus 305 ~~~~~~v~~~~~~~~~~~~~~--~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~ 382 (508)
..+...+.+.+.... ..++ ......++..++..|.. .-| ...+.+.+ +..|.. ++++.+. -.
T Consensus 20 ~~~~~~~~l~~~~Gs--~~e~~~~~G~ah~lehmlf~Gt~---~~~----~~~~~~~l-~~~G~~--~na~t~~----d~ 83 (406)
T 3eoq_A 20 GARSVALGYFVKTGA--RDETKEESGVSHFLEHMVFKGPE---DMD----ALAVNRAF-DRMGAQ--YNAFTSE----EA 83 (406)
T ss_dssp TCSCEEEEEEESCSG--GGSCGGGTTHHHHHHHHHTTCCT---TCC----HHHHHHHH-HHTTCE--EEEEECS----SC
T ss_pred CCCeEEEEEEEcccc--CCCCCCCCCHHHHHHHHHhCCCC---CCC----HHHHHHHH-HHhCCC--ccceecC----Ce
Confidence 346677777777654 3332 34556677777665421 001 12344444 445543 3444332 22
Q ss_pred EEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCC--CHHHH
Q 010516 383 FGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERK--PVEHF 460 (508)
Q Consensus 383 ~~i~~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~--~~~~~ 460 (508)
..+++.+.+++.+++++.+.+.+ . -.+++++|++.|..++..+....+++...+.......+..+.+. +..-.
T Consensus 84 t~y~~~~~~~~l~~~l~ll~d~~-~----p~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G~ 158 (406)
T 3eoq_A 84 TVYYGAVLPEFAYDLLGLFAKLL-R----PALREEDFQTEKLVILEEIARYQDRPGFMAYEWARARFFQGHPLGNSVLGT 158 (406)
T ss_dssp EEEEEEECGGGHHHHHHHHHHHT-S----CCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCGGGCCSSCC
T ss_pred EEEEEEecHHHHHHHHHHHHHHh-c----CCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCCCCCcCC
Confidence 55677888889888888887766 4 24999999999999999999888888888777766666444332 12224
Q ss_pred HHHHhcCCHHHHHHHHHHHhc-CCceEEEEcCC
Q 010516 461 LKTVEGVTAKDIASVAQKLLS-SPLTMASYGDV 492 (508)
Q Consensus 461 ~~~i~~vT~~Di~~~a~~~l~-~~~~~~~~G~~ 492 (508)
.+.|+++|.+|++++.++++. ++.+++++||.
T Consensus 159 ~~~i~~~t~~~l~~f~~~~y~p~n~~l~v~Gd~ 191 (406)
T 3eoq_A 159 RESITALTREGMAAYHRRRYLPKNMVLAATGRV 191 (406)
T ss_dssp HHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESC
T ss_pred HHHHhhCCHHHHHHHHHHhCCccCEEEEEEcCC
Confidence 567899999999999999999 99999999987
No 27
>3gwb_A Peptidase M16 inactive domain family protein; peptidase M16 family, PFL_5859, structural genomics, PSI-2, structure initiative; 1.90A {Pseudomonas fluorescens}
Probab=97.84 E-value=0.00037 Score=70.43 Aligned_cols=168 Identities=13% Similarity=0.026 Sum_probs=111.4
Q ss_pred CCceEEEEEeecCCCCCCC-cchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcceEE
Q 010516 306 SGLTHFVLAFELPGGWHKD-KDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMFG 384 (508)
Q Consensus 306 ~~~~~v~~~~~~~~~~~~~-~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~~ 384 (508)
.+...+.+.|..+. ..+ .......++..++..|.. + +...=+.+..+..|..++++... ..+.
T Consensus 33 ~~~~~~~~~~~~Gs--~~e~~~~g~a~lle~ll~~gt~-------~-~~~~~l~~~l~~~g~~~~a~t~~------~~~~ 96 (434)
T 3gwb_A 33 LPMFDLRLIFAAGS--SQDGNAPGVALLTNAMLNEGVA-------G-KDVGAIAQGFEGLGADFGNGAYK------DMAV 96 (434)
T ss_dssp SSEEEEEEEESCSG--GGCTTSTTHHHHHHHHGGGEET-------T-EEHHHHHHHHHTTTCEEEEEECS------SCEE
T ss_pred CCEEEEEEEEeccc--ccCCcchhHHHHHHHHHhcCcc-------c-CCHHHHHHHHHHhCCEEEeeecC------CeEE
Confidence 46677777777664 333 334455677777754311 0 11111233334456555544321 2345
Q ss_pred EEEEeCcch--HHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCC--HHHH
Q 010516 385 IQGTTGSDF--VSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKP--VEHF 460 (508)
Q Consensus 385 i~~~~~p~~--~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~--~~~~ 460 (508)
+++.+.+++ .+.+++.+.+.+.. -.++++++++.|..++..+....+++...+.......+..+.+.. ..-.
T Consensus 97 ~~~~~~~~~~~l~~~l~ll~~~~~~----p~f~~~~~~~~~~~~~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~ 172 (434)
T 3gwb_A 97 ASLRSLSAVDKREPALKLFAEVVGK----PTFPADSLARIKNQMLAGFEYQKQNPGKLASLELMKRLYGTHPYAHASDGD 172 (434)
T ss_dssp EEEEEECSHHHHHHHHHHHHHHHHS----CCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSTTSSCTTCC
T ss_pred EEEEecCccccHHHHHHHHHHHHhC----CCCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 566666655 78888887776655 249999999999999999998888888887666666654443322 1123
Q ss_pred HHHHhcCCHHHHHHHHHHHhc-CCceEEEEcCCC
Q 010516 461 LKTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 493 (508)
Q Consensus 461 ~~~i~~vT~~Di~~~a~~~l~-~~~~~~~~G~~~ 493 (508)
.+.|+++|.+|++++.++++. .+.+++++||..
T Consensus 173 ~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~~~ 206 (434)
T 3gwb_A 173 AKSIPPITLAQLKAFHAKAYAAGNVVIALVGDLS 206 (434)
T ss_dssp TTTTTTCCHHHHHHHHHHHSCGGGEEEEEEESCC
T ss_pred HHHHHhCCHHHHHHHHHHhcCcCCeEEEEEcCCC
Confidence 577999999999999999998 899999999874
No 28
>3d3y_A Uncharacterized protein; APC29635, conserved protein, enterococcus faecalis V583, STR genomics, PSI-2, protein structure initiative; 1.95A {Enterococcus faecalis}
Probab=97.84 E-value=0.00054 Score=68.87 Aligned_cols=175 Identities=16% Similarity=0.183 Sum_probs=114.0
Q ss_pred CCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCc-ccHHHHHHHhhC-CCeEEEEEeecCCCCcce
Q 010516 305 DSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGM-YSRLYRRVLNEF-PQVQSFSAFSNIYNHSGM 382 (508)
Q Consensus 305 ~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~-~s~L~~~lR~~~-~~~Y~v~a~~~~~~~~g~ 382 (508)
..+...+.+.|..+. .. +......++..+|..|.. ++ ...-+.+..+.. |..++++.... .....
T Consensus 21 ~~~~~~~~~~~~~g~--~~-e~~g~a~ll~~~l~~gt~--------~~~~~~~~~~~l~~~~G~~~~a~t~~~--~t~~~ 87 (425)
T 3d3y_A 21 KYKTVRLLVRFNTRL--NH-ETITKRTLLSSLMETNSL--------NYPNQVKLSERLAELYGASFGIGVSKK--GNQHW 87 (425)
T ss_dssp SCSEEEEEEEEEEEC--CT-TTHHHHHHHHHHHHHCCS--------SSCSHHHHHHHHHHTTSCEEEEEEEEE--TTEEE
T ss_pred ccceEEEEEEEeCCC--Cc-cchhHHHHHHHHHHhhhh--------cCCCHHHHHHHHHHHhCceEeeeeeec--CceEE
Confidence 346778888887765 33 334566777777754321 11 111233333443 66666655432 22233
Q ss_pred EEEEEEeCcc-------hHHHHHHHHHHHHHHhh--CCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHH-cC
Q 010516 383 FGIQGTTGSD-------FVSKAIDLAARELISVA--TPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLT-YG 452 (508)
Q Consensus 383 ~~i~~~~~p~-------~~~~~~~~~~~~l~~l~--~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~-~g 452 (508)
+.+++.+.++ +.+++++.+.+.+..-. . +.++++++++.|..++..+....+++...+.......+. .+
T Consensus 88 ~~~~~~~~~~~~~~~~~~l~~~l~ll~~~l~~p~~~~-~~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~ 166 (425)
T 3d3y_A 88 FNISMNIVNDHYLQDSQVLAEAVDFLKEIIFAPNIQA-GQFEAETFQREKENLKAYLESIVEDKQTYASLALQSVYFNQS 166 (425)
T ss_dssp EEEEEEEECGGGCSSCCHHHHHHHHHHHHHHSCSEET-TEECHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTTTC
T ss_pred EEEEEEecChhhccchhHHHHHHHHHHHHHhCccccc-CCCCHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHhccCC
Confidence 5566666554 57888888877765532 1 128999999999999999988777887777666565553 23
Q ss_pred CCC--CHHHHHHHHhcCCHHHHHHHHHHHhc-CCceEEEEcCCC
Q 010516 453 ERK--PVEHFLKTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 493 (508)
Q Consensus 453 ~~~--~~~~~~~~i~~vT~~Di~~~a~~~l~-~~~~~~~~G~~~ 493 (508)
.+. +.....+.|+++|.+|++++.++++. .+.+++++||..
T Consensus 167 ~~~~~~~~g~~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~ 210 (425)
T 3d3y_A 167 EDQKIPSFGTVAALAEETAASLAAYYQKMLAEDQVDIFVLGDVN 210 (425)
T ss_dssp TTTTSCTTCCHHHHHHCCHHHHHHHHHHHHHHSEEEEEEEESCC
T ss_pred CCccCCCCCCHHHHHhCCHHHHHHHHHHHHhcCCeEEEEECCCC
Confidence 332 22234677889999999999999998 999999999874
No 29
>3cx5_A Cytochrome B-C1 complex subunit 1, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1p84_A* 2ibz_A* 1kb9_A* 3cxh_A* 1ezv_A* 1kyo_A*
Probab=97.83 E-value=0.00068 Score=68.34 Aligned_cols=164 Identities=10% Similarity=0.048 Sum_probs=111.4
Q ss_pred CCceEEEEEeecCCCCCCC--cchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcceE
Q 010516 306 SGLTHFVLAFELPGGWHKD--KDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGMF 383 (508)
Q Consensus 306 ~~~~~v~~~~~~~~~~~~~--~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~ 383 (508)
.+...+.+.+..+. ..+ .+.....++..++..| +. ...-+..|..++ ++... ...
T Consensus 20 ~~~~~~~l~~~~Gs--~~e~~~~~g~ahlle~~l~~g-------------t~--~~~~~~~G~~~n--a~t~~----~~t 76 (431)
T 3cx5_A 20 AHTASVGVVFGSGA--ANENPYNNGVSNLWKNIFLSK-------------EN--SAVAAKEGLALS--SNISR----DFQ 76 (431)
T ss_dssp CSSEEEEEEESCCG--GGSCTTTTTHHHHHHHHHTSH-------------HH--HHHHHHTTCEEE--EEECS----SCE
T ss_pred CCEEEEEEEEecCc--cCCCCCCcchHHHHHHHHhcC-------------CC--cccHHHcCCeee--eeecC----CeE
Confidence 45677777777664 332 3566777888887643 22 122355565444 33321 135
Q ss_pred EEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccCh-HHHHHHHHHHHHHcCCCC--CHHHH
Q 010516 384 GIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESR-MVVSEDIGRQVLTYGERK--PVEHF 460 (508)
Q Consensus 384 ~i~~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~-~~~~~~~~~~~~~~g~~~--~~~~~ 460 (508)
.+++.+.+++.+++++.+.+.+..... ..++++++++.|..++..+....+++ ...+.......+..+.+. +....
T Consensus 77 ~~~~~~~~~~l~~~l~ll~~~~~~p~~-~~f~~~~~~~ek~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~g~ 155 (431)
T 3cx5_A 77 SYIVSSLPGSTDKSLDFLNQSFIQQKA-NLLSSSNFEATKKSVLKQVQDFEDNDHPNRVLEHLHSTAFQNTPLSLPTRGT 155 (431)
T ss_dssp EEEEEECSTTHHHHHHHHHHHHHTCST-TTTCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTTTSGGGSCTTCC
T ss_pred EEEEEechhhHHHHHHHHHHHHhCccc-ccCCHHHHHHHHHHHHHHHHhhhcCchhHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 677888888888888888877665321 01899999999999999988766677 666655555554333332 22234
Q ss_pred HHHHhcCCHHHHHHHHHHHhc-CCceEEEEcCCC
Q 010516 461 LKTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 493 (508)
Q Consensus 461 ~~~i~~vT~~Di~~~a~~~l~-~~~~~~~~G~~~ 493 (508)
.+.|+++|.+|++++.++++. ++.+++++||..
T Consensus 156 ~~~l~~~t~~~l~~f~~~~y~~~~~~l~v~G~~~ 189 (431)
T 3cx5_A 156 LESLENLVVADLESFANNHFLNSNAVVVGTGNIK 189 (431)
T ss_dssp HHHHHTCCHHHHHHHHHHHSCGGGEEEEEEESCC
T ss_pred HHHHhhCCHHHHHHHHHhcCCCCcEEEEEEcCCC
Confidence 677899999999999999998 899999999874
No 30
>3cx5_B Cytochrome B-C1 complex subunit 2, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1kb9_B* 1kyo_B* 1p84_B* 2ibz_B* 1ezv_B* 3cxh_B*
Probab=97.77 E-value=0.00077 Score=66.04 Aligned_cols=165 Identities=12% Similarity=0.053 Sum_probs=109.3
Q ss_pred CCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcc-cHHHHHHHhhCCCeEEEEEeecCCCCcceE
Q 010516 305 DSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMY-SRLYRRVLNEFPQVQSFSAFSNIYNHSGMF 383 (508)
Q Consensus 305 ~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~-s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~ 383 (508)
..+...+.+.+.... ..+.......++..++..|.. .+. ..+.+.+ +..|..++ ++.+ ....
T Consensus 9 ~~~~v~~~~~~~~Gs--~~e~~~G~ah~leh~lf~Gt~--------~~~~~~l~~~l-~~~G~~~n--a~t~----~~~t 71 (352)
T 3cx5_B 9 PTKISTLAVKVHGGS--RYATKDGVAHLLNRFNFQNTN--------TRSALKLVRES-ELLGGTFK--STLD----REYI 71 (352)
T ss_dssp SCSEEEEEEEESCSG--GGCSSTTHHHHHHHHTTSCBS--------SSCHHHHHHHH-HHHTCEEE--EEEC----SSCE
T ss_pred CCceEEEEEEEeeec--cCCCcccHHHHHHHHhccCcC--------CCCHHHHHHHH-HHhCCeEE--EEEc----cceE
Confidence 344445555554443 344455667777777754311 011 2344444 44464443 3332 2246
Q ss_pred EEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHH-HHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCCCHHHHHH
Q 010516 384 GIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLD-RAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERKPVEHFLK 462 (508)
Q Consensus 384 ~i~~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~-~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~ 462 (508)
.+++.+.+++.+.+++.+.+.+..- .+++++++ +.|..++..+....+++...+.......+. +.+.......+
T Consensus 72 ~~~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~~-~~p~~~~~~~~ 146 (352)
T 3cx5_B 72 TLKATFLKDDLPYYVNALADVLYKT----AFKPHELTESVLPAARYDYAVAEQCPVKSAEDQLYAITF-RKGLGNPLLYD 146 (352)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHB----CCCHHHHHHTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-TTTTTSCSSCC
T ss_pred EEEEEechhhHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CCCCCCccchh
Confidence 6677788888888888888877663 38999998 999999999988788888777665555553 33321111257
Q ss_pred HHhcCCHHHHHHHHHHHhc-CCceEEEEcCC
Q 010516 463 TVEGVTAKDIASVAQKLLS-SPLTMASYGDV 492 (508)
Q Consensus 463 ~i~~vT~~Di~~~a~~~l~-~~~~~~~~G~~ 492 (508)
.|+++|.+|++++.++++. ++.+++++| .
T Consensus 147 ~l~~it~~~l~~f~~~~y~~~n~~l~v~G-~ 176 (352)
T 3cx5_B 147 GVERVSLQDIKDFADKVYTKENLEVSGEN-V 176 (352)
T ss_dssp SSSCCCHHHHHHHHHHHCCGGGEEEEEES-S
T ss_pred hhccCCHHHHHHHHHHhCCcCcEEEEEeC-C
Confidence 8999999999999999999 888999999 5
No 31
>1hr6_B Beta-MPP, mitochondrial processing peptidase beta subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_B 1hr8_B* 1hr9_B*
Probab=97.69 E-value=0.0015 Score=66.04 Aligned_cols=166 Identities=10% Similarity=0.019 Sum_probs=111.8
Q ss_pred CCCeEEEEEEEcccccCCCCCCCcHHHHHHHhhcc-----CCCCCChHHHHHHHH-HcCCeeEEee------cceeEEEE
Q 010516 96 VSPVASISLYVGCGSIYESPISFGTTHLLERMAFR-----STRNRSHLRIVREVE-AIGGNVQASA------SREQMGYS 163 (508)
Q Consensus 96 ~~~~~~i~l~~~~Gs~~e~~~~~g~a~ll~~l~~~-----gt~~~s~~~l~~~l~-~~g~~~~~~~------~~~~~~~~ 163 (508)
+.+...+.+.+.+..... .......++.+++.. |.+......|.+.+. ..|..++++. ....+.+.
T Consensus 243 ~~~~~~v~~~~~~~~~~~--~~~~~l~vl~~iLg~~~r~~~~g~~~~s~L~~~lre~~glay~~~~~~~~~~~~g~~~i~ 320 (443)
T 1hr6_B 243 TLPTTHIAIALEGVSWSA--PDYFVALATQAIVGNWDRAIGTGTNSPSPLAVAASQNGSLANSYMSFSTSYADSGLWGMY 320 (443)
T ss_dssp TCSEEEEEEEEECCCTTC--TTHHHHHHHHHHHCEEETTTBCSSSSCCHHHHHHHSTTCSCSEEEEEEEECSSCEEEEEE
T ss_pred CccceEEEEEEecCCCCC--ccHHHHHHHHHHhCCCcccCCCCCCcccHHHHHHHHHcCCeEEEEeeecCCCCceEEEEE
Confidence 346777777777654322 345556677777742 111122345666665 4555433322 23455666
Q ss_pred EEcc--cCChHHHHHHHHHhh---hCCCCCHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh-cCCCCCCCCCCChHH
Q 010516 164 FDAL--KTYVPEMVELLIDCV---RNPVFLDWEVNEQLTKVKSEISEVSNNPQSLLLEAIHSAG-YSGALANPLLAPESA 237 (508)
Q Consensus 164 ~~~~--~~~l~~~l~ll~~~~---~~p~f~~~~~~~~k~~~~~e~~~~~~~p~~~~~~~l~~~~-~~~~~~~~~~~~~~~ 237 (508)
+.+. ++++.++++.+.+.+ .+..++++++++.|..+...+.....++...+.......+ ++.+... ....+.
T Consensus 321 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~t~~el~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~ 398 (443)
T 1hr6_B 321 IVTDSNEHNVRLIVNEILKEWKRIKSGKISDAEVNRAKAQLKAALLLSLDGSTAIVEDIGRQVVTTGKRLSP--EEVFEQ 398 (443)
T ss_dssp EEEETTTCCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHHHSSCCCH--HHHHHH
T ss_pred EEecCChhHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhcCCcCCH--HHHHHH
Confidence 7777 788998888877655 4445999999999999999998877788766655555443 3322221 123477
Q ss_pred hccCCHHHHHHHHHhhcCCCCeEEEEcC
Q 010516 238 INRLNSTLLEEFVAENYTGPRMVLAASG 265 (508)
Q Consensus 238 l~~l~~~~l~~f~~~~~~~~~~~l~i~G 265 (508)
|.++|.+|++++.++++.+++++++++|
T Consensus 399 i~~vt~~dv~~~a~~~l~~~~~~~~v~g 426 (443)
T 1hr6_B 399 VDKITKDDIIMWANYRLQNKPVSMVALG 426 (443)
T ss_dssp HHTCCHHHHHHHHHHHSSSCCEEEEEEE
T ss_pred HHhCCHHHHHHHHHHHhccCCcEEEEEC
Confidence 9999999999999999999999999999
No 32
>1pp9_A Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_A* 1be3_A* 1l0n_A* 1ntk_A* 1ntm_A* 1ntz_A* 1nu1_A* 1l0l_A* 1ppj_A* 1sqq_A* 1sqv_A* 1sqx_A* 2a06_A* 2fyu_A* 2ybb_A* 1sqb_A* 1sqp_A* 1qcr_A* 1bcc_A* 2bcc_A* ...
Probab=97.69 E-value=0.0016 Score=66.03 Aligned_cols=171 Identities=15% Similarity=0.123 Sum_probs=112.7
Q ss_pred eCCCCceEEEEEeecCCCCCCC--cchHHHHHHHHhcCCCCCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCc
Q 010516 303 QADSGLTHFVLAFELPGGWHKD--KDAMTLTVLQMLLGGGGSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHS 380 (508)
Q Consensus 303 ~~~~~~~~v~~~~~~~~~~~~~--~~~~~~~vl~~lL~~~~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~ 380 (508)
..+.+...+.+.|..+. ..+ .......++..++..|. ..-|. ..+.+.+ +..|.. ++++... +
T Consensus 29 ~~~~~~~~~~l~~~~Gs--~~e~~~~~Glahllehmlf~GT---~~~~~----~~~~~~l-~~~G~~--~na~t~~--d- 93 (446)
T 1pp9_A 29 QSSQPTCTVGVWIDAGS--RYESEKNNGAGYFVEHLAFKGT---KNRPG----NALEKEV-ESMGAH--LNAYSTR--E- 93 (446)
T ss_dssp ECSCSEEEEEEEESCSG--GGCCTTTTTHHHHHHHHTTSCB---SSSTT----THHHHHH-HHTTCE--EEEEECS--S-
T ss_pred eCCCCEEEEEEEEcccc--CCCCCCCCcHHHHHHHHhcCCC---CCCCH----HHHHHHH-HHcCCE--EEEEEcC--C-
Confidence 33345566666666554 333 23455667777775431 11121 2333333 344543 4444332 2
Q ss_pred ceEEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCC--CHH
Q 010516 381 GMFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERK--PVE 458 (508)
Q Consensus 381 g~~~i~~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~--~~~ 458 (508)
...+++.+.+++.+++++.+.+.+... .++++++++.|..++..+....+++...+.......+..+.+. +..
T Consensus 94 -~t~~~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~ek~~v~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (446)
T 1pp9_A 94 -HTAYYIKALSKDLPKAVELLADIVQNC----SLEDSQIEKERDVILQELQENDTSMRDVVFNYLHATAFQGTPLAQSVE 168 (446)
T ss_dssp -CEEEEEEEEGGGHHHHHHHHHHHHHHB----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSS
T ss_pred -eEEEEEEecHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhcCCCCCCCCCc
Confidence 256677777888899998888877763 3999999999999999998888888777665555554333322 112
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhc-CCceEEEEcCCC
Q 010516 459 HFLKTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 493 (508)
Q Consensus 459 ~~~~~i~~vT~~Di~~~a~~~l~-~~~~~~~~G~~~ 493 (508)
-..+.|+++|.+|++++.++++. ++.+++++||..
T Consensus 169 G~~~~l~~~~~~~l~~f~~~~y~p~n~~l~v~Gd~~ 204 (446)
T 1pp9_A 169 GPSENVRKLSRADLTEYLSRHYKAPRMVLAAAGGLE 204 (446)
T ss_dssp CCHHHHHHCCHHHHHHHHHHHCCGGGEEEEEEESCC
T ss_pred CCHHHHHhCCHHHHHHHHHhccCCCCEEEEEEcCCC
Confidence 23567888999999999999998 999999999875
No 33
>1pp9_B Ubiquinol-cytochrome C reductase complex core Pro mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: d.185.1.1 d.185.1.1 PDB: 1bgy_B* 1be3_B* 1l0n_B* 1ntk_B* 1ntm_B* 1ntz_B* 1nu1_B* 1l0l_B* 1ppj_B* 1sqq_B* 1sqv_B* 1sqx_B* 2a06_B* 2fyu_B* 2ybb_B* 1sqb_B* 1sqp_B* 1qcr_B* 2bcc_B* 3bcc_B* ...
Probab=97.64 E-value=0.0016 Score=65.75 Aligned_cols=165 Identities=10% Similarity=0.027 Sum_probs=109.8
Q ss_pred CCCceEEEEEeecCCCCCCC--cchHHHHHHHHhcCCCCCCCCCCCCCCcc-cHHHHHHHhhCCCeEEEEEeecCCCCcc
Q 010516 305 DSGLTHFVLAFELPGGWHKD--KDAMTLTVLQMLLGGGGSFSAGGPGKGMY-SRLYRRVLNEFPQVQSFSAFSNIYNHSG 381 (508)
Q Consensus 305 ~~~~~~v~~~~~~~~~~~~~--~~~~~~~vl~~lL~~~~s~~~g~pg~g~~-s~L~~~lR~~~~~~Y~v~a~~~~~~~~g 381 (508)
..+...+.+.+..+. ..+ .......++..++..|.. .+. ..+...+ +..|..++ ++.. ..
T Consensus 41 ~~~~~~~~~~~~~Gs--~~e~~~~~g~a~lle~~~~~gt~--------~~~~~~~~~~l-~~~G~~~n--a~t~----~~ 103 (439)
T 1pp9_B 41 YAPASRIGLFIKAGS--RYENSNNLGTSHLLRLASSLTTK--------GASSFKITRGI-EAVGGKLS--VTST----RE 103 (439)
T ss_dssp CCSEEEEEEEESCSG--GGCCTTSTTHHHHHHHTTTSCBS--------SSCHHHHHHHH-HHTTCEEE--EEEC----SS
T ss_pred CCceEEEEEEEeccc--cCCCCCcCcHHHHHHHhhcCCCC--------cCCHHHHHHHH-HHhCCeEE--EEec----ce
Confidence 345566666666554 222 245666788887754311 111 1343333 45565444 3332 23
Q ss_pred eEEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCC--CHHH
Q 010516 382 MFGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERK--PVEH 459 (508)
Q Consensus 382 ~~~i~~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~--~~~~ 459 (508)
...+++.+.+++.+++++.+.+.+... .++++++++.|..++..+....+++...+.......+ ++.+. +...
T Consensus 104 ~t~~~~~~~~~~l~~~l~ll~~~~~~p----~f~~~~~~~~k~~v~~e~~~~~~~p~~~~~~~~~~~~-~~~~~~~~~~g 178 (439)
T 1pp9_B 104 NMAYTVECLRDDVDILMEFLLNVTTAP----EFRRWEVAALQPQLRIDKAVALQNPQAHVIENLHAAA-YRNALANSLYC 178 (439)
T ss_dssp CEEEEEEEEGGGHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH-BSSGGGSCSSC
T ss_pred EEEEEEEeehhhHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH-hcCCCCCCccC
Confidence 456677788888888888888776552 3899999999999999998877788777665555554 33211 1222
Q ss_pred HHHHHhcCCHHHHHHHHHHHhc-CCceEEEEcC
Q 010516 460 FLKTVEGVTAKDIASVAQKLLS-SPLTMASYGD 491 (508)
Q Consensus 460 ~~~~i~~vT~~Di~~~a~~~l~-~~~~~~~~G~ 491 (508)
..+.|+++|.+|++++.++++. ++.+++++|+
T Consensus 179 ~~~~l~~it~~~l~~f~~~~y~~~~~~l~v~G~ 211 (439)
T 1pp9_B 179 PDYRIGKVTPVELHDYVQNHFTSARMALIGLGV 211 (439)
T ss_dssp CGGGTTTCCHHHHHHHHHHHCSGGGEEEEEESS
T ss_pred CHHHHhhcCHHHHHHHHHHhCCCCceEEEEeCC
Confidence 3567899999999999999998 8999999997
No 34
>3ami_A Zinc peptidase; alpha/beta, zinc binding, hydrolase; 2.40A {Sphingomonas} PDB: 3amj_C
Probab=97.57 E-value=0.0017 Score=65.93 Aligned_cols=167 Identities=13% Similarity=0.109 Sum_probs=106.3
Q ss_pred CCceEEEEEeecCCCCCCCc--chHHHHHHHHhcCCC-CCCCCCCCCCCcccHHHHHHHhhCCCeEEEEEeecCCCCcce
Q 010516 306 SGLTHFVLAFELPGGWHKDK--DAMTLTVLQMLLGGG-GSFSAGGPGKGMYSRLYRRVLNEFPQVQSFSAFSNIYNHSGM 382 (508)
Q Consensus 306 ~~~~~v~~~~~~~~~~~~~~--~~~~~~vl~~lL~~~-~s~~~g~pg~g~~s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~ 382 (508)
.+...+.+.+.... ..++ ......++..++-.| ..+ |. ..|.+.+ +..|. .++++... + .
T Consensus 26 ~~~v~~~~~~~~Gs--~~e~~~~~Glah~lehmlf~Gt~~~----~~----~~l~~~l-~~~g~--~~na~t~~--d--~ 88 (445)
T 3ami_A 26 APTLVHMVWYRVGS--MDETTGTTGVAHALEHMMFKGTKDV----GP----GEFSKRV-AAMGG--RDNAFTTR--D--Y 88 (445)
T ss_dssp SSEEEEEEEESCCG--GGCCTTCTTHHHHHHHHTTSCBSSS----CT----THHHHHH-HHTTC--EEEEEECS--S--C
T ss_pred CCeEEEEEEEeecc--CCCCCCCccHHHHHHHhhcCCCCCC----CH----HHHHHHH-HHhCC--ccccccCC--C--e
Confidence 45556666665543 3322 345555666666533 211 21 2343333 44554 34454432 2 2
Q ss_pred EEEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHH-hccChHHHHHHHHHHHHHcCCCCC--HHH
Q 010516 383 FGIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILM-NLESRMVVSEDIGRQVLTYGERKP--VEH 459 (508)
Q Consensus 383 ~~i~~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~-~~~s~~~~~~~~~~~~~~~g~~~~--~~~ 459 (508)
..+++.+.+++++.+++.+.+.+..- .+++++|++.|..++..+.+ ..+++..++.......+..+.+.. ..-
T Consensus 89 t~y~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~e~~~v~~e~~~~~~~~p~~~~~~~~~~~~~~~~p~~~~~~G 164 (445)
T 3ami_A 89 TAYYQQVPSSRLSDVMGLEADRMANL----VVDDELFKKEIQVIAEERRWRTDDKPRSKAYEALMAASYVAHPYRVPVIG 164 (445)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHCSSSGGGSCTTC
T ss_pred EEEEEECCHHHHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHhccCCCCCCCCCC
Confidence 34455667788888888887776552 39999999999999999984 456777666555555553333321 112
Q ss_pred HHHHHhcCCHHHHHHHHHHHhc-CCceEEEEcCCC
Q 010516 460 FLKTVEGVTAKDIASVAQKLLS-SPLTMASYGDVI 493 (508)
Q Consensus 460 ~~~~i~~vT~~Di~~~a~~~l~-~~~~~~~~G~~~ 493 (508)
..+.|+++|.+|++++.++++. ++.+++++||..
T Consensus 165 ~~e~l~~it~~~l~~f~~~~y~p~n~~l~vvGd~d 199 (445)
T 3ami_A 165 WMNDIQNMTAQDVRDWYKRWYGPNNATVVVVGDVE 199 (445)
T ss_dssp CHHHHHHCCHHHHHHHHHHHCSGGGEEEEEEESCC
T ss_pred CHHHHhhCCHHHHHHHHHHhCCccceEEEEEcCCC
Confidence 3577899999999999999999 999999999863
No 35
>1hr6_A Alpha-MPP, mitochondrial processing peptidase alpha subunit; hxxeh zinc-binding motif, hydrolase; HET: EPE; 2.50A {Saccharomyces cerevisiae} SCOP: d.185.1.1 d.185.1.1 PDB: 1hr7_A 1hr8_A* 1hr9_A*
Probab=97.56 E-value=0.0021 Score=65.84 Aligned_cols=168 Identities=12% Similarity=0.035 Sum_probs=111.8
Q ss_pred CCCceEEEEEeecCCCCCCCcchHHHHHHHHhcCCCCCCCCCCCCCCcc-cHHHHHHHhhCCCeEEEEEeecCCCCcceE
Q 010516 305 DSGLTHFVLAFELPGGWHKDKDAMTLTVLQMLLGGGGSFSAGGPGKGMY-SRLYRRVLNEFPQVQSFSAFSNIYNHSGMF 383 (508)
Q Consensus 305 ~~~~~~v~~~~~~~~~~~~~~~~~~~~vl~~lL~~~~s~~~g~pg~g~~-s~L~~~lR~~~~~~Y~v~a~~~~~~~~g~~ 383 (508)
+.+...+.+.+..+.............++..++..|.. .+. ..+...+ +..|..+. ++.+. -..
T Consensus 23 ~~~~~~~~l~~~~Gs~~e~~~~~Glah~lehm~f~Gt~--------~~~~~~~~~~l-e~~G~~~n--a~t~~----d~t 87 (475)
T 1hr6_A 23 PGHFSALGLYIDAGSRFEGRNLKGCTHILDRLAFKSTE--------HVEGRAMAETL-ELLGGNYQ--CTSSR----ENL 87 (475)
T ss_dssp CCSSEEEEEEESCCGGGCTTTTTTHHHHHHHTTTSCBT--------TBCHHHHHHHH-HHTTSCEE--EEECS----SCE
T ss_pred CCCEEEEEEEEccccCCCCCCCCcHHHHHHHHHhCCCC--------CCCHHHHHHHH-HHcCCEEE--EEEcc----CeE
Confidence 34666777777665411112345566777777764311 011 1333333 44565444 33321 235
Q ss_pred EEEEEeCcchHHHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHcCCCC--CHHHHH
Q 010516 384 GIQGTTGSDFVSKAIDLAARELISVATPGEVDQVQLDRAKQSTKSAILMNLESRMVVSEDIGRQVLTYGERK--PVEHFL 461 (508)
Q Consensus 384 ~i~~~~~p~~~~~~~~~~~~~l~~l~~~~~i~~~el~~ak~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~--~~~~~~ 461 (508)
.+++.+.+++++.+++.+.+.+... .+++++|++.|..++..+....+++...+.......+..+.+. +..-..
T Consensus 88 ~y~~~~~~~~l~~~l~ll~d~~~~p----~f~~~~~~~er~~v~~e~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~G~~ 163 (475)
T 1hr6_A 88 MYQASVFNQDVGKMLQLMSETVRFP----KITEQELQEQKLSAEYEIDEVWMKPELVLPELLHTAAYSGETLGSPLICPR 163 (475)
T ss_dssp EEEEEECGGGHHHHHHHHHHHHHCB----CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTSGGGSCSSCCG
T ss_pred EEEEEecHHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCCCCCCCCCcCCH
Confidence 6677888888888888888776653 3899999999999999998877888877776666665433322 112234
Q ss_pred HHHhcCCHHHHHHHHHHHhc-CCceEEEEcCC
Q 010516 462 KTVEGVTAKDIASVAQKLLS-SPLTMASYGDV 492 (508)
Q Consensus 462 ~~i~~vT~~Di~~~a~~~l~-~~~~~~~~G~~ 492 (508)
+.|+++|.+||+++.++++. ++.+++++| .
T Consensus 164 ~~l~~it~~~l~~f~~~~y~p~n~~l~v~G-~ 194 (475)
T 1hr6_A 164 GLIPSISKYYLLDYRNKFYTPENTVAAFVG-V 194 (475)
T ss_dssp GGGGGCCHHHHHHHHHHHCCGGGEEEEEES-S
T ss_pred HHHhhcCHHHHHHHHHHhCCcccEEEEEeC-C
Confidence 67899999999999999998 899999999 5
No 36
>3go9_A Insulinase family protease; IDP00573, structural genomics, for structural genomics of infectious diseases, csgid, HYDR; HET: MSE; 1.62A {Yersinia pestis}
Probab=96.38 E-value=0.042 Score=56.45 Aligned_cols=163 Identities=10% Similarity=0.077 Sum_probs=94.8
Q ss_pred eCCCCeEEEEEEEcccccCCCCCCCc-----HHHHHHHhhccCCCCCChHHHHHHHH---HcCCeeEEee----cceeEE
Q 010516 94 TSVSPVASISLYVGCGSIYESPISFG-----TTHLLERMAFRSTRNRSHLRIVREVE---AIGGNVQASA----SREQMG 161 (508)
Q Consensus 94 ~~~~~~~~i~l~~~~Gs~~e~~~~~g-----~a~ll~~l~~~gt~~~s~~~l~~~l~---~~g~~~~~~~----~~~~~~ 161 (508)
..+.+...+.+.+++.....++ ... ...++..+++. .|...+. ..|..++++. .++...
T Consensus 261 ~~~~~q~~v~l~~~~~~~~~~d-~~~l~~~~~~~v~~~iLg~--------~L~~~lre~~~~gl~y~~~s~~~~~~~~~~ 331 (492)
T 3go9_A 261 NEQAAQDTLSLMWDTPWHPIQD-SMALSRYWRSDLAREALFW--------HIKQVLEKNNQKNLKLGFDCRVQYQRAQCA 331 (492)
T ss_dssp ESSCSSEEEEEEEEEECCCCCS-HHHHHHHHHHHHHHHHHHH--------HHHHHHHHSCCTTCEEEEEEEEETTEEEEE
T ss_pred cCCCCCcEEEEEecCCCCCccc-HHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhccccccccCchhhhhhcceE
Confidence 3344444555555555443321 111 12455555541 3443343 3455444443 334556
Q ss_pred EEEEcccCChHHHHHHHHHhhhC---CCCCHHHHHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHhcCCCCCCCCC-
Q 010516 162 YSFDALKTYVPEMVELLIDCVRN---PVFLDWEVNEQLTKVKSEISEVS-----NNPQSLLLEAIHSAGYSGALANPLL- 232 (508)
Q Consensus 162 ~~~~~~~~~l~~~l~ll~~~~~~---p~f~~~~~~~~k~~~~~e~~~~~-----~~p~~~~~~~l~~~~~~~~~~~~~~- 232 (508)
+.+.+..++.+++++.+...+.. --|+++++++.|..++..+.... .++...+...+........+..+..
T Consensus 332 ~~i~~~~~~~~~a~~~i~~el~~l~~~g~te~EL~~aK~~~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 411 (492)
T 3go9_A 332 IHLNTPVENLTANMTFVARELAALRANGLSQAEFDALMTQKNDQLSKLFATYARTDTDILMSQRLRSQQSGVVDIAPEQY 411 (492)
T ss_dssp EEEEECGGGHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHTHHHHHHTCCHHHHHHHHHHHHHHTCCCBCHHHH
T ss_pred EEEEcCcccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcCCHHHH
Confidence 77777788999988888776654 34899999999999988876532 2344445554444333222222210
Q ss_pred -CC-hHHhccCCHHHHHHHHHhhcCCCCeEEEEcC
Q 010516 233 -AP-ESAINRLNSTLLEEFVAENYTGPRMVLAASG 265 (508)
Q Consensus 233 -~~-~~~l~~l~~~~l~~f~~~~~~~~~~~l~i~G 265 (508)
.. .+.|+.+|.+|+.++.++++.+++..+++.+
T Consensus 412 ~~~~~~~i~~vT~edV~~~a~~~l~~~~~~vvvg~ 446 (492)
T 3go9_A 412 QKLRQAFLSGLTLAELNRELKQQLSQDTTLVLMQP 446 (492)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHTSCCEEEEEEE
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCCCCeEEEEcC
Confidence 01 1448999999999999999997655444443
No 37
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=25.21 E-value=89 Score=17.95 Aligned_cols=23 Identities=22% Similarity=0.589 Sum_probs=19.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 010516 457 VEHFLKTVEGVTAKDIASVAQKL 479 (508)
Q Consensus 457 ~~~~~~~i~~vT~~Di~~~a~~~ 479 (508)
.+++.+.|.++|.-++.++.+.+
T Consensus 3 ~~~iie~i~~lTvlEl~eLvk~l 25 (30)
T 1zav_U 3 IDEIIEAIEKLTVSELAELVKKL 25 (30)
T ss_dssp HHHHHHHHHHSBHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHH
Confidence 46889999999999999988754
No 38
>2v75_A Nuclear polyadenylated RNA-binding protein NAB2; metal-binding, nucleus, zinc-finger, nuclear PR; 1.8A {Saccharomyces cerevisiae} PDB: 2jps_A 3lcn_A
Probab=20.64 E-value=2.5e+02 Score=21.03 Aligned_cols=46 Identities=22% Similarity=0.264 Sum_probs=33.0
Q ss_pred cChHHHHHHHHHHHHHcCCCCC-HHHHHHHHhcCCHHHHHHHHHHHh
Q 010516 435 ESRMVVSEDIGRQVLTYGERKP-VEHFLKTVEGVTAKDIASVAQKLL 480 (508)
Q Consensus 435 ~s~~~~~~~~~~~~~~~g~~~~-~~~~~~~i~~vT~~Di~~~a~~~l 480 (508)
++..+.++.|.-.+.++|.+.+ .+++-...+++..+.+.++.+..|
T Consensus 26 EDv~YVAEyIvlLisNg~s~~sivqELssLFd~v~~~a~~~vVqt~F 72 (104)
T 2v75_A 26 EDIKYVAEYIVLLIVNGGTVESVVDELASLFDSVSRDTLANVVQTAF 72 (104)
T ss_dssp SCHHHHHHHHHHHHHTTCCHHHHHHHHHHHCTTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHhheeeeCCCChHHHHHHHHHHHccccHHHHHHHHHHHH
Confidence 5667888888877766665555 467777888899997777766433
Done!