Query 010517
Match_columns 508
No_of_seqs 394 out of 4381
Neff 9.2
Searched_HMMs 29240
Date Mon Mar 25 08:30:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gpm_A Engineered protein OR26 100.0 1.8E-35 6.2E-40 265.2 20.6 159 19-183 6-164 (169)
2 3b7b_A Euchromatic histone-lys 100.0 3E-35 1E-39 278.3 23.0 219 8-242 2-221 (237)
3 1oy3_D Transcription factor in 100.0 1.2E-35 4E-40 288.3 19.7 215 11-241 3-268 (282)
4 1yyh_A HN1;, notch 1, ankyrin 100.0 1.7E-35 5.8E-40 283.5 19.4 228 8-252 1-243 (253)
5 3d9h_A CDNA FLJ77766, highly s 100.0 1.4E-34 4.7E-39 282.4 24.7 223 9-252 51-273 (285)
6 2xai_A ASB-9, ankyrin repeat a 100.0 8.2E-35 2.8E-39 280.1 21.8 181 9-197 28-208 (261)
7 2xai_A ASB-9, ankyrin repeat a 100.0 9.8E-35 3.4E-39 279.6 22.1 208 16-241 2-209 (261)
8 1k1a_A B-cell lymphoma 3-encod 100.0 2.2E-34 7.4E-39 272.8 21.9 214 11-240 3-225 (241)
9 3ljn_A Hypothetical protein; a 100.0 3.1E-34 1.1E-38 289.6 20.4 231 5-254 8-266 (364)
10 2dzn_A Probable 26S proteasome 100.0 8.4E-34 2.9E-38 266.6 20.4 212 17-241 2-218 (228)
11 4b93_B Ankyrin repeat domain-c 100.0 3.1E-34 1.1E-38 277.3 17.2 216 11-241 5-228 (269)
12 1wdy_A 2-5A-dependent ribonucl 100.0 1.1E-32 3.9E-37 267.1 26.2 229 9-253 30-274 (285)
13 3utm_A Tankyrase-1; tankyrase, 100.0 3.5E-33 1.2E-37 279.2 23.1 217 7-239 48-321 (351)
14 1ikn_D Protein (I-kappa-B-alph 100.0 1.1E-34 3.8E-39 274.6 10.3 216 11-240 2-228 (236)
15 1yyh_A HN1;, notch 1, ankyrin 100.0 3.9E-33 1.3E-37 267.1 20.3 190 12-207 52-242 (253)
16 3aji_A 26S proteasome non-ATPa 100.0 1.3E-32 4.6E-37 259.1 22.1 211 14-240 3-214 (231)
17 2f8y_A Notch homolog 1, transl 100.0 1.7E-32 5.9E-37 256.8 22.7 192 13-210 21-213 (223)
18 3aji_A 26S proteasome non-ATPa 100.0 1.2E-32 4.3E-37 259.2 21.8 186 10-201 33-218 (231)
19 2fo1_E LIN-12 protein; beta-ba 100.0 4.1E-33 1.4E-37 282.5 17.5 230 8-252 115-366 (373)
20 1n11_A Ankyrin; clathrin, BAND 100.0 1.4E-32 4.9E-37 284.3 21.7 230 7-253 4-233 (437)
21 1oy3_D Transcription factor in 100.0 9.2E-33 3.2E-37 267.8 18.8 185 10-200 38-270 (282)
22 1wdy_A 2-5A-dependent ribonucl 100.0 4.8E-32 1.6E-36 262.7 23.8 226 15-253 3-240 (285)
23 3b7b_A Euchromatic histone-lys 100.0 4E-32 1.4E-36 256.9 22.1 198 7-210 34-232 (237)
24 1k1a_A B-cell lymphoma 3-encod 100.0 2.7E-32 9.3E-37 258.4 20.6 189 7-201 36-229 (241)
25 4b93_B Ankyrin repeat domain-c 100.0 7E-33 2.4E-37 267.9 16.3 184 10-199 45-229 (269)
26 2rfa_A Transient receptor pote 100.0 3.5E-32 1.2E-36 256.4 20.6 191 16-212 2-221 (232)
27 4g8k_A 2-5A-dependent ribonucl 100.0 6.8E-32 2.3E-36 269.5 23.6 227 13-253 21-294 (337)
28 1n11_A Ankyrin; clathrin, BAND 100.0 5.4E-32 1.8E-36 279.9 23.1 228 8-252 170-397 (437)
29 1s70_B 130 kDa myosin-binding 100.0 2E-32 7E-37 268.2 18.6 224 13-252 36-284 (299)
30 3d9h_A CDNA FLJ77766, highly s 100.0 1.7E-31 5.8E-36 260.4 23.4 183 8-198 83-265 (285)
31 2rfm_A Putative ankyrin repeat 100.0 2.6E-32 8.9E-37 249.9 16.5 163 10-178 28-190 (192)
32 2dzn_A Probable 26S proteasome 100.0 1.5E-31 5.1E-36 251.2 21.4 182 12-199 31-219 (228)
33 3eu9_A Huntingtin-interacting 100.0 2.5E-31 8.6E-36 251.0 23.0 228 11-254 3-232 (240)
34 2y1l_E Darpin-8.4; hydrolase-i 100.0 2.4E-31 8.2E-36 238.4 20.4 159 14-178 11-169 (169)
35 3kea_A K1L; tropism, ANK repea 100.0 1.6E-32 5.3E-37 267.8 13.5 220 9-255 23-244 (285)
36 1ihb_A P18-INK4C(INK6), cyclin 100.0 2E-31 6.9E-36 236.7 17.1 159 15-180 3-162 (162)
37 3utm_A Tankyrase-1; tankyrase, 100.0 4.5E-31 1.6E-35 263.9 21.6 229 9-254 16-302 (351)
38 3v31_A Ankyrin repeat family A 100.0 1.6E-31 5.6E-36 238.8 16.3 160 16-181 2-161 (167)
39 3ljn_A Hypothetical protein; a 100.0 1.7E-31 6E-36 269.4 18.1 226 7-242 43-300 (364)
40 3hra_A Ankyrin repeat family p 100.0 7.4E-31 2.5E-35 241.6 20.7 188 14-207 2-197 (201)
41 3v30_A DNA-binding protein rfx 100.0 2.3E-31 7.7E-36 239.1 16.1 164 17-186 2-166 (172)
42 1ikn_D Protein (I-kappa-B-alph 100.0 2.1E-31 7.2E-36 252.0 16.6 168 9-182 37-211 (236)
43 3hra_A Ankyrin repeat family p 100.0 8.4E-31 2.9E-35 241.2 19.3 164 9-178 31-201 (201)
44 2rfa_A Transient receptor pote 100.0 3.8E-31 1.3E-35 249.4 17.2 175 7-183 27-225 (232)
45 2fo1_E LIN-12 protein; beta-ba 100.0 3.2E-31 1.1E-35 268.7 17.5 196 7-208 156-366 (373)
46 2f8y_A Notch homolog 1, transl 100.0 3.2E-30 1.1E-34 241.4 21.9 169 7-181 48-217 (223)
47 1awc_B Protein (GA binding pro 100.0 3E-30 1E-34 227.2 19.3 151 17-174 2-152 (153)
48 3twr_A Tankyrase-2; ankyrin re 100.0 1.1E-30 3.8E-35 232.9 16.5 160 13-179 4-164 (165)
49 3f6q_A Integrin-linked protein 100.0 1.2E-30 4.2E-35 236.0 16.9 166 15-186 3-169 (179)
50 2etb_A Transient receptor pote 100.0 3.4E-31 1.2E-35 253.7 13.9 191 17-210 2-243 (256)
51 1s70_B 130 kDa myosin-binding 100.0 1.8E-30 6.1E-35 254.3 18.9 186 7-198 63-275 (299)
52 4gpm_A Engineered protein OR26 100.0 1.8E-30 6.1E-35 232.7 17.1 137 7-146 27-163 (169)
53 2etb_A Transient receptor pote 100.0 5.3E-31 1.8E-35 252.4 13.6 168 8-181 30-247 (256)
54 2pnn_A Transient receptor pote 100.0 7.3E-31 2.5E-35 254.0 14.2 202 8-212 4-257 (273)
55 4hbd_A KN motif and ankyrin re 100.0 2.2E-30 7.5E-35 251.4 16.7 163 10-178 104-273 (276)
56 1bd8_A P19INK4D CDK4/6 inhibit 100.0 9.9E-30 3.4E-34 224.4 18.3 154 16-177 1-155 (156)
57 3eu9_A Huntingtin-interacting 100.0 1.4E-29 4.8E-34 239.0 20.1 197 8-210 33-232 (240)
58 4g8k_A 2-5A-dependent ribonucl 100.0 3.8E-29 1.3E-33 249.5 24.1 225 8-252 49-321 (337)
59 2pnn_A Transient receptor pote 100.0 2.3E-30 7.8E-35 250.5 13.5 165 12-180 49-258 (273)
60 3kea_A K1L; tropism, ANK repea 100.0 4.8E-30 1.6E-34 250.2 15.6 183 16-212 61-245 (285)
61 3jxi_A Vanilloid receptor-rela 100.0 4.3E-30 1.5E-34 246.6 13.2 165 14-182 43-252 (260)
62 3jxi_A Vanilloid receptor-rela 100.0 5.1E-30 1.7E-34 246.1 12.0 194 14-211 2-248 (260)
63 1sw6_A Regulatory protein SWI6 100.0 8.3E-30 2.8E-34 253.5 13.5 177 8-198 121-326 (327)
64 1ycs_B 53BP2, P53BP2; ankyrin 100.0 7E-30 2.4E-34 242.4 11.6 167 14-187 2-171 (239)
65 2vge_A RELA-associated inhibit 100.0 3.7E-30 1.3E-34 242.7 6.0 186 10-204 14-204 (229)
66 2vge_A RELA-associated inhibit 100.0 5.1E-29 1.7E-33 234.9 13.0 192 33-241 1-198 (229)
67 1bi7_B P16INK4A, MTS1, multipl 100.0 7.8E-29 2.7E-33 219.0 10.8 143 11-159 6-149 (156)
68 1d9s_A Cyclin-dependent kinase 100.0 2.1E-28 7.3E-33 211.0 12.1 133 8-144 3-136 (136)
69 1sw6_A Regulatory protein SWI6 100.0 8.4E-29 2.9E-33 246.2 10.8 198 19-240 99-325 (327)
70 4hbd_A KN motif and ankyrin re 100.0 8.7E-29 3E-33 240.1 10.6 189 16-210 75-272 (276)
71 3v30_A DNA-binding protein rfx 100.0 7.4E-28 2.5E-32 216.1 15.4 143 10-157 29-171 (172)
72 1d9s_A Cyclin-dependent kinase 99.9 9.9E-28 3.4E-32 206.8 12.0 134 40-180 2-136 (136)
73 2rfm_A Putative ankyrin repeat 99.9 3.6E-27 1.2E-31 215.6 15.4 161 43-209 28-188 (192)
74 2jab_A H10-2-G3; HER2, darpin, 99.9 9.1E-27 3.1E-31 200.7 16.1 127 13-142 10-136 (136)
75 3t8k_A Uncharacterized protein 99.9 3.2E-28 1.1E-32 221.6 6.8 158 16-181 5-180 (186)
76 1n0r_A 4ANK, 4 ankyrin repeats 99.9 2.6E-26 8.7E-31 194.2 16.1 126 16-144 1-126 (126)
77 2y1l_E Darpin-8.4; hydrolase-i 99.9 2.8E-26 9.5E-31 205.3 17.1 133 7-142 37-169 (169)
78 1ihb_A P18-INK4C(INK6), cyclin 99.9 1.2E-26 4.3E-31 205.7 14.5 134 7-144 28-162 (162)
79 3f6q_A Integrin-linked protein 99.9 1.9E-26 6.5E-31 208.4 13.9 136 8-146 30-165 (179)
80 3v31_A Ankyrin repeat family A 99.9 4.8E-26 1.6E-30 203.1 16.2 156 49-210 2-157 (167)
81 1bi7_B P16INK4A, MTS1, multipl 99.9 3.1E-26 1.1E-30 202.2 11.8 143 43-192 5-148 (156)
82 1awc_B Protein (GA binding pro 99.9 2.3E-25 8E-30 195.8 15.5 148 50-204 2-149 (153)
83 1bd8_A P19INK4D CDK4/6 inhibit 99.9 2.2E-25 7.4E-30 196.4 14.8 129 8-141 27-155 (156)
84 1ycs_B 53BP2, P53BP2; ankyrin 99.9 2.7E-26 9.2E-31 217.6 9.5 148 14-167 34-193 (239)
85 3c5r_A BARD-1, BRCA1-associate 99.9 6.4E-26 2.2E-30 195.5 10.7 131 40-177 1-131 (137)
86 3c5r_A BARD-1, BRCA1-associate 99.9 2.3E-26 7.9E-31 198.3 7.8 129 12-143 5-133 (137)
87 2jab_A H10-2-G3; HER2, darpin, 99.9 2.5E-25 8.5E-30 191.7 14.2 127 46-178 10-136 (136)
88 1n0r_A 4ANK, 4 ankyrin repeats 99.9 6.4E-25 2.2E-29 185.6 15.8 126 49-180 1-126 (126)
89 3deo_A Signal recognition part 99.9 2.3E-25 7.9E-30 202.1 13.7 143 12-177 39-181 (183)
90 3twr_A Tankyrase-2; ankyrin re 99.9 7.8E-25 2.7E-29 194.8 16.4 149 46-201 4-153 (165)
91 3ui2_A Signal recognition part 99.9 1.4E-25 4.9E-30 213.3 11.6 146 12-180 40-185 (244)
92 3ehr_A Osteoclast-stimulating 99.9 6.7E-26 2.3E-30 212.2 8.5 139 10-153 66-205 (222)
93 3t8k_A Uncharacterized protein 99.9 4.6E-26 1.6E-30 207.3 6.7 134 10-146 30-181 (186)
94 3aaa_C Myotrophin, protein V-1 99.9 3.9E-25 1.3E-29 186.9 11.3 113 14-129 4-116 (123)
95 2b0o_E UPLC1; arfgap, structur 99.9 1.3E-24 4.4E-29 213.1 13.9 142 16-168 150-299 (301)
96 3aaa_C Myotrophin, protein V-1 99.9 1E-23 3.5E-28 178.1 11.7 114 46-165 3-116 (123)
97 3jue_A Arfgap with coiled-coil 99.9 1.8E-23 6E-28 210.0 15.1 147 13-163 195-345 (368)
98 3ehr_A Osteoclast-stimulating 99.9 4.2E-24 1.4E-28 199.9 8.7 134 46-185 69-203 (222)
99 2aja_A Ankyrin repeat family p 99.9 1.3E-25 4.4E-30 226.4 -2.0 158 12-183 87-253 (376)
100 3lvq_E ARF-GAP with SH3 domain 99.9 4.1E-23 1.4E-27 216.9 16.2 128 16-146 131-267 (497)
101 1dcq_A PYK2-associated protein 99.9 3.4E-22 1.2E-26 193.6 16.4 125 18-144 131-263 (278)
102 3deo_A Signal recognition part 99.9 7.8E-25 2.7E-29 198.7 -2.3 115 47-168 41-156 (183)
103 1dcq_A PYK2-associated protein 99.9 1.4E-21 4.9E-26 189.3 18.2 167 11-181 60-264 (278)
104 2b0o_E UPLC1; arfgap, structur 99.9 7.1E-22 2.4E-26 193.6 15.9 139 50-200 151-298 (301)
105 1n0q_A 3ANK, 3 ankyrin repeats 99.9 4.9E-22 1.7E-26 159.0 12.0 91 17-110 2-92 (93)
106 1n0q_A 3ANK, 3 ankyrin repeats 99.9 9.6E-22 3.3E-26 157.3 12.6 93 49-144 1-93 (93)
107 2l6b_A NR1C; ankyrin, consensu 99.9 2.8E-22 9.5E-27 167.1 7.6 107 13-122 5-111 (115)
108 2aja_A Ankyrin repeat family p 99.9 7.2E-23 2.5E-27 206.3 4.2 174 16-208 64-245 (376)
109 2l6b_A NR1C; ankyrin, consensu 99.9 9.8E-22 3.3E-26 163.7 8.7 109 45-158 4-112 (115)
110 3lvq_E ARF-GAP with SH3 domain 99.8 4E-21 1.4E-25 201.7 14.6 137 50-190 132-275 (497)
111 3ui2_A Signal recognition part 99.8 1.2E-21 4E-26 186.3 8.6 168 15-209 13-181 (244)
112 3jue_A Arfgap with coiled-coil 99.8 6E-21 2.1E-25 191.6 13.2 132 46-180 195-326 (368)
113 2zgd_A 3 repeat synthetic anky 99.8 6.5E-19 2.2E-23 145.5 11.7 92 11-105 18-109 (110)
114 2zgd_A 3 repeat synthetic anky 99.8 1.2E-18 4.1E-23 143.9 11.1 93 43-138 17-109 (110)
115 2vje_B MDM4 protein; proto-onc 99.5 9.6E-15 3.3E-19 106.7 3.5 56 453-508 6-63 (63)
116 2vje_A E3 ubiquitin-protein li 99.5 9.5E-15 3.3E-19 107.1 3.5 56 453-508 7-64 (64)
117 2ea5_A Cell growth regulator w 99.4 1.4E-13 4.9E-18 101.9 3.3 53 451-507 12-64 (68)
118 2yho_A E3 ubiquitin-protein li 99.2 1.3E-12 4.6E-17 99.8 2.0 51 453-507 17-67 (79)
119 4ic3_A E3 ubiquitin-protein li 99.2 3.4E-12 1.2E-16 96.5 2.0 52 453-508 23-74 (74)
120 2ecg_A Baculoviral IAP repeat- 99.2 3.9E-12 1.3E-16 96.5 0.8 52 453-508 24-75 (75)
121 2d8t_A Dactylidin, ring finger 99.1 4.9E-11 1.7E-15 89.5 4.6 49 452-501 13-61 (71)
122 2csy_A Zinc finger protein 183 99.1 8.1E-11 2.8E-15 90.7 5.5 52 450-502 11-62 (81)
123 2ecn_A Ring finger protein 141 99.1 5.4E-11 1.8E-15 89.0 3.7 53 452-506 13-65 (70)
124 2djb_A Polycomb group ring fin 99.1 1.2E-10 4E-15 87.6 4.9 52 450-502 11-63 (72)
125 2xeu_A Ring finger protein 4; 99.0 6E-11 2.1E-15 87.0 2.8 54 453-507 2-64 (64)
126 3ng2_A RNF4, snurf, ring finge 99.0 4.5E-11 1.6E-15 89.7 2.2 53 453-506 9-70 (71)
127 2ea6_A Ring finger protein 4; 99.0 1.1E-10 3.7E-15 87.0 3.3 49 452-501 13-68 (69)
128 1chc_A Equine herpes virus-1 r 99.0 1.1E-10 3.7E-15 86.8 3.1 52 454-506 5-57 (68)
129 2kiz_A E3 ubiquitin-protein li 99.0 3.1E-10 1.1E-14 84.5 5.0 53 451-504 11-66 (69)
130 2ysl_A Tripartite motif-contai 99.0 4.1E-10 1.4E-14 84.9 5.4 49 452-501 18-69 (73)
131 4ayc_A E3 ubiquitin-protein li 99.0 1.9E-10 6.6E-15 98.3 3.6 49 454-503 53-101 (138)
132 2ep4_A Ring finger protein 24; 98.9 3E-10 1E-14 85.8 3.2 54 451-505 12-68 (74)
133 2l0b_A E3 ubiquitin-protein li 98.9 4.8E-10 1.6E-14 88.4 4.3 49 452-501 38-89 (91)
134 2ecm_A Ring finger and CHY zin 98.9 3.8E-10 1.3E-14 79.9 3.2 46 454-500 5-54 (55)
135 2yur_A Retinoblastoma-binding 98.9 5E-10 1.7E-14 84.6 4.0 49 451-500 12-63 (74)
136 2ect_A Ring finger protein 126 98.9 4.7E-10 1.6E-14 85.7 3.6 50 451-501 12-64 (78)
137 2ct2_A Tripartite motif protei 98.9 9.4E-10 3.2E-14 86.2 5.3 49 451-500 12-67 (88)
138 1e4u_A Transcriptional repress 98.9 3.7E-10 1.3E-14 85.7 2.7 55 451-506 8-67 (78)
139 2ecy_A TNF receptor-associated 98.9 5.6E-10 1.9E-14 82.3 3.5 49 452-501 13-62 (66)
140 3ztg_A E3 ubiquitin-protein li 98.9 7.4E-10 2.5E-14 87.6 4.4 50 450-500 9-61 (92)
141 2ecw_A Tripartite motif-contai 98.9 9.8E-10 3.3E-14 85.4 5.0 48 452-500 17-70 (85)
142 1iym_A EL5; ring-H2 finger, ub 98.9 5E-10 1.7E-14 79.3 2.8 47 453-500 4-54 (55)
143 1x4j_A Ring finger protein 38; 98.9 6.5E-10 2.2E-14 84.2 2.8 48 453-501 22-72 (75)
144 1t1h_A Gspef-atpub14, armadill 98.9 1.4E-09 4.8E-14 83.0 4.5 49 452-501 6-55 (78)
145 2egp_A Tripartite motif-contai 98.9 3.8E-10 1.3E-14 86.5 1.1 49 451-500 9-64 (79)
146 2ecv_A Tripartite motif-contai 98.8 1.1E-09 3.7E-14 85.1 3.3 48 452-500 17-70 (85)
147 3lrq_A E3 ubiquitin-protein li 98.8 1.2E-09 4.1E-14 87.7 2.8 47 453-500 21-69 (100)
148 2ysj_A Tripartite motif-contai 98.8 3.8E-09 1.3E-13 77.0 5.0 43 452-495 18-63 (63)
149 1g25_A CDK-activating kinase a 98.8 1.9E-09 6.6E-14 79.1 2.4 47 454-501 3-55 (65)
150 3fl2_A E3 ubiquitin-protein li 98.8 2.3E-09 8E-14 89.7 3.1 48 453-501 51-99 (124)
151 2ecj_A Tripartite motif-contai 98.8 3.5E-09 1.2E-13 75.7 3.6 43 452-495 13-58 (58)
152 3t6p_A Baculoviral IAP repeat- 98.8 1.3E-09 4.6E-14 106.7 1.6 52 453-508 294-345 (345)
153 2y43_A E3 ubiquitin-protein li 98.8 2.9E-09 1E-13 85.3 3.2 48 453-501 21-69 (99)
154 2ckl_A Polycomb group ring fin 98.7 4.7E-09 1.6E-13 85.6 4.1 48 453-501 14-62 (108)
155 2kr4_A Ubiquitin conjugation f 98.7 9.2E-09 3.1E-13 79.7 5.2 49 452-501 12-60 (85)
156 1bor_A Transcription factor PM 98.7 7.1E-10 2.4E-14 78.7 -1.2 45 452-500 4-48 (56)
157 2y1n_A E3 ubiquitin-protein li 98.7 6.6E-09 2.3E-13 102.2 4.8 50 455-505 333-383 (389)
158 3l11_A E3 ubiquitin-protein li 98.7 2.6E-09 8.9E-14 88.2 0.9 48 453-501 14-62 (115)
159 1z6u_A NP95-like ring finger p 98.7 5.9E-09 2E-13 90.0 3.1 48 453-501 77-125 (150)
160 1wgm_A Ubiquitin conjugation f 98.7 2E-08 6.7E-13 79.9 5.4 49 452-501 20-69 (98)
161 3hct_A TNF receptor-associated 98.7 1.2E-08 4.1E-13 84.5 4.4 49 452-501 16-65 (118)
162 2ecl_A Ring-box protein 2; RNF 98.7 1.1E-08 3.9E-13 78.4 3.7 47 453-500 14-75 (81)
163 2kre_A Ubiquitin conjugation f 98.7 1.8E-08 6E-13 80.5 4.9 49 452-501 27-75 (100)
164 1v87_A Deltex protein 2; ring- 98.6 1E-08 3.5E-13 84.5 3.2 46 455-501 26-94 (114)
165 2ckl_B Ubiquitin ligase protei 98.6 1E-08 3.6E-13 90.3 3.4 48 452-500 52-101 (165)
166 3knv_A TNF receptor-associated 98.6 1.6E-08 5.4E-13 86.3 3.6 47 452-499 29-76 (141)
167 1jm7_A BRCA1, breast cancer ty 98.6 6.8E-09 2.3E-13 85.2 1.1 47 454-501 21-70 (112)
168 1rmd_A RAG1; V(D)J recombinati 98.6 1.8E-08 6.2E-13 83.2 3.1 48 453-501 22-70 (116)
169 4ap4_A E3 ubiquitin ligase RNF 98.6 2E-08 6.9E-13 85.0 3.2 53 453-506 6-67 (133)
170 4ap4_A E3 ubiquitin ligase RNF 98.6 2.4E-08 8.1E-13 84.6 3.0 53 453-506 71-132 (133)
171 3dpl_R Ring-box protein 1; ubi 98.5 1E-07 3.4E-12 76.8 4.1 47 453-500 36-100 (106)
172 1jm7_B BARD1, BRCA1-associated 98.4 2.5E-08 8.7E-13 82.4 -0.3 45 453-500 21-66 (117)
173 2c2l_A CHIP, carboxy terminus 98.3 2.4E-07 8.2E-12 89.0 4.5 48 453-501 207-255 (281)
174 3hcs_A TNF receptor-associated 98.3 2.6E-07 8.9E-12 81.7 3.6 49 452-501 16-65 (170)
175 2f42_A STIP1 homology and U-bo 98.3 4.2E-07 1.4E-11 79.9 4.2 48 453-501 105-153 (179)
176 2yu4_A E3 SUMO-protein ligase 98.3 5.4E-07 1.8E-11 71.1 4.1 45 453-498 6-59 (94)
177 4a0k_B E3 ubiquitin-protein li 98.2 1.6E-07 5.4E-12 76.6 0.5 46 454-500 48-111 (117)
178 2d8s_A Cellular modulator of i 98.0 1.8E-06 6.1E-11 65.5 2.8 48 453-501 14-70 (80)
179 3htk_C E3 SUMO-protein ligase 98.0 6.2E-06 2.1E-10 76.1 6.0 47 453-500 180-231 (267)
180 2bay_A PRE-mRNA splicing facto 98.0 4E-06 1.4E-10 60.0 3.3 51 455-506 4-57 (61)
181 1wim_A KIAA0161 protein; ring 97.8 4.9E-06 1.7E-10 65.6 1.6 44 454-498 5-61 (94)
182 3vk6_A E3 ubiquitin-protein li 97.7 3.8E-05 1.3E-09 59.2 4.3 49 456-505 3-53 (101)
183 2ct0_A Non-SMC element 1 homol 97.5 0.00011 3.7E-09 54.4 5.0 49 452-501 13-64 (74)
184 1vyx_A ORF K3, K3RING; zinc-bi 97.3 0.00013 4.5E-09 51.7 2.6 49 452-500 4-58 (60)
185 3k1l_B Fancl; UBC, ring, RWD, 96.9 0.00018 6E-09 68.7 0.9 49 452-501 306-373 (381)
186 2ko5_A Ring finger protein Z; 95.2 0.0077 2.6E-07 45.5 2.0 48 455-505 29-77 (99)
187 2cs3_A Protein C14ORF4, MY039 94.1 0.028 9.4E-07 40.9 2.5 33 453-486 14-50 (93)
188 3nw0_A Non-structural maintena 89.9 0.22 7.5E-06 45.7 3.8 47 454-501 180-229 (238)
189 2jun_A Midline-1; B-BOX, TRIM, 89.5 0.12 4.1E-06 40.5 1.5 31 454-485 3-36 (101)
190 1weo_A Cellulose synthase, cat 77.1 2.8 9.7E-05 31.3 4.1 46 454-500 16-69 (93)
191 3ql9_A Transcriptional regulat 75.7 2.2 7.7E-05 34.7 3.6 51 447-498 50-111 (129)
192 2fiy_A Protein FDHE homolog; F 69.9 0.68 2.3E-05 44.1 -0.9 45 454-498 182-231 (309)
193 2lbm_A Transcriptional regulat 67.4 4.8 0.00016 33.4 3.8 49 449-498 58-117 (142)
194 2lri_C Autoimmune regulator; Z 66.6 2.7 9.2E-05 29.9 1.9 44 454-498 12-59 (66)
195 1wil_A KIAA1045 protein; ring 56.9 9 0.00031 28.3 3.2 32 452-485 13-47 (89)
196 3mkq_B Coatomer subunit alpha; 54.7 51 0.0018 28.3 8.2 133 15-176 6-139 (177)
197 2d8v_A Zinc finger FYVE domain 52.5 7.3 0.00025 27.3 2.0 34 451-486 5-39 (67)
198 2l5u_A Chromodomain-helicase-D 48.7 9.2 0.00031 26.5 2.1 45 452-497 9-57 (61)
199 2yql_A PHD finger protein 21A; 48.3 2.7 9.1E-05 28.7 -0.8 46 451-497 6-55 (56)
200 1zbd_B Rabphilin-3A; G protein 47.0 1.3 4.5E-05 36.5 -2.9 45 453-498 54-107 (134)
201 2zet_C Melanophilin; complex, 43.4 2.4 8.1E-05 35.8 -2.0 45 453-498 67-117 (153)
202 1mm2_A MI2-beta; PHD, zinc fin 43.4 3.9 0.00013 28.5 -0.6 48 451-499 6-57 (61)
203 3m62_A Ubiquitin conjugation f 41.8 20 0.00068 39.4 4.3 51 450-501 887-938 (968)
204 1z60_A TFIIH basal transcripti 41.4 9.7 0.00033 26.3 1.2 40 455-495 16-58 (59)
205 3u5n_A E3 ubiquitin-protein li 40.9 4.1 0.00014 36.3 -1.0 48 451-499 4-55 (207)
206 1wev_A Riken cDNA 1110020M19; 38.8 3.3 0.00011 31.3 -1.6 48 453-501 15-75 (88)
207 3i2d_A E3 SUMO-protein ligase 38.2 16 0.00053 35.5 2.5 45 455-500 250-299 (371)
208 3zrh_A Ubiquitin thioesterase 37.5 69 0.0023 31.3 6.8 49 23-72 28-90 (454)
209 2l43_A N-teminal domain from h 34.7 16 0.00054 27.4 1.6 49 451-500 22-77 (88)
210 2csz_A Synaptotagmin-like prot 34.1 4.9 0.00017 29.2 -1.3 47 452-499 23-74 (76)
211 4fo9_A E3 SUMO-protein ligase 33.6 20 0.00069 34.5 2.5 45 455-500 216-265 (360)
212 1xwh_A Autoimmune regulator; P 33.5 8.3 0.00028 27.2 -0.2 47 453-500 7-57 (66)
213 4g26_A Pentatricopeptide repea 32.5 69 0.0024 32.4 6.6 140 21-174 33-197 (501)
214 1fp0_A KAP-1 corepressor; PHD 31.6 12 0.0004 28.2 0.4 48 450-498 21-72 (88)
215 2pv0_B DNA (cytosine-5)-methyl 31.5 33 0.0011 33.4 3.6 53 446-499 85-149 (386)
216 2e6r_A Jumonji/ARID domain-con 29.0 9.6 0.00033 28.9 -0.5 47 451-498 13-66 (92)
217 3a1b_A DNA (cytosine-5)-methyl 28.5 29 0.00099 29.2 2.3 52 447-499 72-135 (159)
218 2puy_A PHD finger protein 21A; 27.8 8.5 0.00029 26.5 -0.9 46 453-499 4-53 (60)
219 4g26_A Pentatricopeptide repea 24.2 1.5E+02 0.005 29.9 7.3 102 30-140 90-199 (501)
220 2yt5_A Metal-response element- 22.7 16 0.00053 25.6 -0.3 47 453-500 5-63 (66)
221 1y02_A CARP2, FYVE-ring finger 20.5 12 0.00041 30.0 -1.5 43 455-498 20-66 (120)
222 1joc_A EEA1, early endosomal a 20.4 27 0.00094 28.1 0.7 29 455-484 70-102 (125)
223 3zrh_A Ubiquitin thioesterase 20.0 2.2E+02 0.0074 27.9 6.8 59 62-141 33-91 (454)
No 1
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=100.00 E-value=1.8e-35 Score=265.24 Aligned_cols=159 Identities=31% Similarity=0.392 Sum_probs=150.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCC
Q 010517 19 ELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGL 98 (508)
Q Consensus 19 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~ 98 (508)
+.|+.||+.|+.++|+.||++|+|+|.+|.+|+||||+|+.. ++.+++++|+++|++++.+ |..|+||||+|+..|+
T Consensus 6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~-~~~~~~~~ll~~gad~~~~--d~~g~TpLh~A~~~g~ 82 (169)
T 4gpm_A 6 KRLIEAAENGNKDRVKDLIENGADVNASDSDGRTPLHHAAEN-GHKEVVKLLISKGADVNAK--DSDGRTPLHHAAENGH 82 (169)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHhcccchhhh--ccCCCCHHHHHHHcCC
Confidence 579999999999999999999999999999999999999997 9999999999999999998 8899999999999999
Q ss_pred HHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCC
Q 010517 99 EPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG 178 (508)
Q Consensus 99 ~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g 178 (508)
.++|++|+++|++++.+|.+|+||||+|+..|+.+++++|+++|++++ .+|.+|+|||| +|+..|+.+++++|+++|
T Consensus 83 ~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~-~A~~~g~~~iv~~Ll~~G 159 (169)
T 4gpm_A 83 KEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVN--TSDSDGRTPLD-LAREHGNEEVVKLLEKQG 159 (169)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHTC-
T ss_pred HHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999 99999999999 999999999999999999
Q ss_pred CCCCC
Q 010517 179 TANPS 183 (508)
Q Consensus 179 ~~~~~ 183 (508)
++++.
T Consensus 160 A~ie~ 164 (169)
T 4gpm_A 160 GWLEH 164 (169)
T ss_dssp -----
T ss_pred CCcCC
Confidence 98854
No 2
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=3e-35 Score=278.31 Aligned_cols=219 Identities=23% Similarity=0.242 Sum_probs=204.9
Q ss_pred cCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCC
Q 010517 8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87 (508)
Q Consensus 8 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~ 87 (508)
++.+.+|.+|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+.. |+.+++++|+++|++++.+ +..|.
T Consensus 2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~ 78 (237)
T 3b7b_A 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAEN-NHLEAVKYLIKAGALVDPK--DAEGS 78 (237)
T ss_dssp CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTTTCCCCCC--CTTSC
T ss_pred CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCccCCCCCCHHHHHHHh-CCHHHHHHHHhCCCCCCCC--CCCCC
Confidence 56788999999999999999999999999999999999999999999999998 9999999999999999988 88999
Q ss_pred cHHHHHHHcCCHHHHHHHHHCC-CCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcC
Q 010517 88 TPLHHAAKRGLEPTVRLLLSCG-ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM 166 (508)
Q Consensus 88 tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~ 166 (508)
||||+|+..|+.+++++|++.| ++++..+..|.||||+|+..|+.+++++|+++|++++ .++..|.|||| +|+..+
T Consensus 79 t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~ 155 (237)
T 3b7b_A 79 TCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN--IRDNEENICLH-WAAFSG 155 (237)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHC
T ss_pred cHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--ccCCCCCCHHH-HHHHCC
Confidence 9999999999999999999998 8999999999999999999999999999999999999 89999999999 999999
Q ss_pred CHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcC
Q 010517 167 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANE 242 (508)
Q Consensus 167 ~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~ 242 (508)
+.+++++|+++|++++..+..+.++++.++..+....+..|+ .++.| ++.+|..|+||+++|....
T Consensus 156 ~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll--------~~gad--~~~~d~~g~t~l~~A~~~~ 221 (237)
T 3b7b_A 156 CVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFL--------SRDSD--VTLKNKEGETPLQCASLNS 221 (237)
T ss_dssp CHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHH--------TTTCC--TTCCCTTSCCHHHHSCTTC
T ss_pred CHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHH--------HcCCC--CCccCCCCCCHHHHHHHHH
Confidence 999999999999999999989999999999988866555433 34777 7889999999999998654
No 3
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=1.2e-35 Score=288.28 Aligned_cols=215 Identities=20% Similarity=0.142 Sum_probs=186.9
Q ss_pred ccccCCchHHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCC
Q 010517 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGAS---LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87 (508)
Q Consensus 11 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~---~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~ 87 (508)
+.+|.+|.||||+|+..|+.++|++|+++|++ ++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~ 79 (282)
T 1oy3_D 3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL-GEASTVEKLYAAGAGVLVA--ERGGH 79 (282)
T ss_dssp CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSSCC--CTTSC
T ss_pred CccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCC
Confidence 56799999999999999999999999999998 889999999999999998 9999999999999999998 88999
Q ss_pred cHHHHHHHcCCHHHHHHHHHCCCC-----------------------------------------------ccccCCCCC
Q 010517 88 TPLHHAAKRGLEPTVRLLLSCGAN-----------------------------------------------ALVRNDDCH 120 (508)
Q Consensus 88 tpLh~A~~~g~~~~v~~Ll~~ga~-----------------------------------------------~~~~d~~g~ 120 (508)
||||+|+..|+.+++++|+++|++ ++..|..|.
T Consensus 80 tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 159 (282)
T 1oy3_D 80 TALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGH 159 (282)
T ss_dssp CHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSC
T ss_pred CHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCc
Confidence 999999999999999999998765 677889999
Q ss_pred cHHHHHHHhCCHHHHHHHHHcCCccccccccc-CCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCcccccccccccccc
Q 010517 121 TALGVARIKGHINVVRAIESHICYFCGWLREF-YGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDV 199 (508)
Q Consensus 121 TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~-~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~ 199 (508)
||||+|+..|+.+++++|+++|++++ .++. .|+|||| +|+..++.+++++|+++|++++.++..+.++++.++..+
T Consensus 160 t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~~~g~tpL~-~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~ 236 (282)
T 1oy3_D 160 TPLHVAVIHKDAEMVRLLRDAGADLN--KPEPTCGRTPLH-LAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRP 236 (282)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTSS
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCcCHHH-HHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHHHHHcC
Confidence 99999999999999999999999999 7774 5999999 999999999999999999999999999999999999998
Q ss_pred ChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhc
Q 010517 200 QPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN 241 (508)
Q Consensus 200 ~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~ 241 (508)
+...+..|+. ++++ ++.+|..|.||++++...
T Consensus 237 ~~~~v~~Ll~--------~ga~--~~~~~~~g~tpl~~a~~~ 268 (282)
T 1oy3_D 237 NPILARLLRA--------HGAP--EPEDGGDKLSPCSSSGSD 268 (282)
T ss_dssp CHHHHHHHHH--------TTCC--CCCCC-------------
T ss_pred CcHHHHHHHH--------cCCC--cCcCCCcccccccccCCc
Confidence 8666555443 3788 888999999999998753
No 4
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=1.7e-35 Score=283.51 Aligned_cols=228 Identities=21% Similarity=0.187 Sum_probs=173.5
Q ss_pred cCcccccCCchHHHHHHHHcC-------------CHHHHHHHHHcCCCCCc-cCCCCChHHHHHHHhCCCHHHHHHHHHc
Q 010517 8 MNQHQQRQSKDELLYQWVIAG-------------DVDAIRALRSQGASLEW-MDKEGKTPLIVACMDSGLINVAKTLIEL 73 (508)
Q Consensus 8 ~~~~~~~~~g~t~L~~Aa~~g-------------~~~~v~~Ll~~g~~~~~-~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ 73 (508)
+++|.+|.+|.||||+|+..| +.++|++|+++|++++. .|..|.||||+|+.. |+.+++++|+++
T Consensus 1 ~dvn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ 79 (253)
T 1yyh_A 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARY-SRSDAAKRLLEA 79 (253)
T ss_dssp ---------------------------------------------------CCCTTSCCHHHHHHHT-TCHHHHHHHHHT
T ss_pred CCCCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHc
Confidence 367889999999999999977 89999999999999865 589999999999998 999999999999
Q ss_pred CCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCC-CccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCccccccccc
Q 010517 74 GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGA-NALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREF 152 (508)
Q Consensus 74 ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga-~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~ 152 (508)
|++++.+ |..|+||||+|+..|+.+++++|++.++ +++..|..|.||||+|+..|+.+++++|++.|++++ .+|.
T Consensus 80 g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~d~ 155 (253)
T 1yyh_A 80 SADANIQ--DNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVN--AVDD 155 (253)
T ss_dssp TCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCCTT--CBCT
T ss_pred CCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCCCC--CcCC
Confidence 9999998 8899999999999999999999999987 899999999999999999999999999999999999 8999
Q ss_pred CCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCc
Q 010517 153 YGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATK 232 (508)
Q Consensus 153 ~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~ 232 (508)
.|.|||| +|+..++.+++++|+++|++++..+..+.++++.++..+....+..|+.. +++ ++.+|..|+
T Consensus 156 ~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~--------ga~--~~~~d~~g~ 224 (253)
T 1yyh_A 156 LGKSALH-WAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH--------FAN--RDITDHMDR 224 (253)
T ss_dssp TSCBHHH-HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT--------TCC--TTCCCTTCC
T ss_pred CCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc--------CCC--ccccccCCC
Confidence 9999999 99999999999999999999999999999999999998887666554443 677 778899999
Q ss_pred chhHhhhhcCCChhHHHHHH
Q 010517 233 IRYKFASANEGDKHQLQWLD 252 (508)
Q Consensus 233 t~l~~a~~~~~~~~~l~~l~ 252 (508)
||+++|... +....++.|.
T Consensus 225 tpl~~A~~~-g~~~i~~~l~ 243 (253)
T 1yyh_A 225 LPRDIAQER-MHHDIVRLLD 243 (253)
T ss_dssp CHHHHHHHT-TCHHHHHHHH
T ss_pred CHHHHHHHc-CCHHHHHHHH
Confidence 999999754 5556666654
No 5
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.4e-34 Score=282.40 Aligned_cols=223 Identities=19% Similarity=0.161 Sum_probs=202.3
Q ss_pred CcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCc
Q 010517 9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT 88 (508)
Q Consensus 9 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~t 88 (508)
..+.+|..|.||||+|+..|+.++|++|+++|++++.+|.+|.||||+|+.. |+.+++++|+++|++++.+ |..|+|
T Consensus 51 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~t 127 (285)
T 3d9h_A 51 PLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG-GHLSCVKILLKHGAQVNGV--TADWHT 127 (285)
T ss_dssp TTCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCEECTTCCCHHHHHHHT-TCHHHHHHHHHTTCCSSCC--CTTCCC
T ss_pred cccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHC-CcHHHHHHHHHCCCCCCCC--CCCCCC
Confidence 3567899999999999999999999999999999999999999999999997 9999999999999999998 889999
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCH
Q 010517 89 PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR 168 (508)
Q Consensus 89 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~ 168 (508)
|||+|+..|+.+++++|+++|++++.. ..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.
T Consensus 128 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~--~~d~~g~t~L~-~A~~~~~~ 203 (285)
T 3d9h_A 128 PLFNACVSGSWDCVNLLLQHGASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGNID--HKISHLGTPLY-LACENQQR 203 (285)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSSCS-CTTSCHHHHHHHHTCHHHHHHHHHTTCCTT--CCBTTTBCHHH-HHHHTTCH
T ss_pred HHHHHHHcCHHHHHHHHHHCCCCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHcCcH
Confidence 999999999999999999999999854 459999999999999999999999999999 89999999999 99999999
Q ss_pred HHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcCCChhHH
Q 010517 169 KIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQL 248 (508)
Q Consensus 169 ~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~~l 248 (508)
+++++|+++|++++. +..+.++++.++..++...+..|+.. ++| ++.+|..|+||+++|... ...+
T Consensus 204 ~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~--------gad--~~~~d~~g~t~l~~A~~~---~~~~ 269 (285)
T 3d9h_A 204 ACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDF--------GAD--TQAKNAEGKRPVELVPPE---SPLA 269 (285)
T ss_dssp HHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHT--------TCC--TTCCCTTSCCGGGGSCTT---SHHH
T ss_pred HHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHC--------CCC--CCCcCCCCCCHHHHhcCc---cHHH
Confidence 999999999999985 66789999999998887666554432 677 888999999999999832 3455
Q ss_pred HHHH
Q 010517 249 QWLD 252 (508)
Q Consensus 249 ~~l~ 252 (508)
+.|.
T Consensus 270 ~~Ll 273 (285)
T 3d9h_A 270 QLFL 273 (285)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 6
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=8.2e-35 Score=280.15 Aligned_cols=181 Identities=18% Similarity=0.196 Sum_probs=109.5
Q ss_pred CcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCc
Q 010517 9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT 88 (508)
Q Consensus 9 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~t 88 (508)
+++.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++. +..|.|
T Consensus 28 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~---~~~g~t 103 (261)
T 2xai_A 28 AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS-GSWDCVNLLLQHGASVQP---ESDLAS 103 (261)
T ss_dssp CSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSSC---SCTTCC
T ss_pred CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCC---CCCCCC
Confidence 4445555666666666666666666666666666666666666666666665 666666666666666554 234566
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCH
Q 010517 89 PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR 168 (508)
Q Consensus 89 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~ 168 (508)
|||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++ . +..|.|||| +|+..++.
T Consensus 104 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~-~~~g~t~Lh-~A~~~~~~ 179 (261)
T 2xai_A 104 PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN--Q-GKGQDSPLH-AVARTASE 179 (261)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHHTCCTT--C-CBTTBCHHH-HHHHHTCH
T ss_pred HHHHHHHcCcHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCC--C-CCCCCChHH-HHHHcCCH
Confidence 6666666666666666666666666666666666666666666666666666666655 2 555666666 66666666
Q ss_pred HHHHHhhhCCCCCCCCCcccccccccccc
Q 010517 169 KIWVVVIPCGTANPSKPLRFELVIYPSLQ 197 (508)
Q Consensus 169 ~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~ 197 (508)
+++++|+++|++++.++..++++++.+..
T Consensus 180 ~~v~~Ll~~gad~~~~d~~g~tpl~~A~~ 208 (261)
T 2xai_A 180 ELACLLMDFGADTQAKNAEGKRPVELVPP 208 (261)
T ss_dssp HHHHHHHHTTCCTTCCCTTSCCGGGGSCT
T ss_pred HHHHHHHHcCCCCCCcCCCCCChhhhccc
Confidence 66666666666666665556666666553
No 7
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription regulation, autoantibody; 2.58A {Homo sapiens}
Probab=100.00 E-value=9.8e-35 Score=279.58 Aligned_cols=208 Identities=20% Similarity=0.188 Sum_probs=191.7
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHH
Q 010517 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95 (508)
Q Consensus 16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~ 95 (508)
+|.||||+|+..|+.++|++|+++|++++.+|.+|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+|+.
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~ 78 (261)
T 2xai_A 2 SDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLG-GHLSCVKILLKHGAQVNGV--TADWHTPLFNACV 78 (261)
T ss_dssp --CCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCCHHHHHHH
Confidence 689999999999999999999999999999999999999999998 9999999999999999998 8899999999999
Q ss_pred cCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhh
Q 010517 96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI 175 (508)
Q Consensus 96 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll 175 (508)
.|+.+++++|+++|++++. +..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll 154 (261)
T 2xai_A 79 SGSWDCVNLLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNID--HKISHLGTPLY-LACENQQRACVKKLL 154 (261)
T ss_dssp HTCHHHHHHHHHTTCCSSC-SCTTCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCBTTTBCHHH-HHHHTTCHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCC--cCCCCCCCHHH-HHHHhCCHHHHHHHH
Confidence 9999999999999999985 5569999999999999999999999999999 89999999999 999999999999999
Q ss_pred hCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhc
Q 010517 176 PCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN 241 (508)
Q Consensus 176 ~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~ 241 (508)
++|++++. +..+.++++.++..+....+..|+. .++| ++.+|..|+||+++|...
T Consensus 155 ~~g~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~--------~gad--~~~~d~~g~tpl~~A~~~ 209 (261)
T 2xai_A 155 ESGADVNQ-GKGQDSPLHAVARTASEELACLLMD--------FGAD--TQAKNAEGKRPVELVPPE 209 (261)
T ss_dssp HHTCCTTC-CBTTBCHHHHHHHHTCHHHHHHHHH--------TTCC--TTCCCTTSCCGGGGSCTT
T ss_pred HcCCCCCC-CCCCCChHHHHHHcCCHHHHHHHHH--------cCCC--CCCcCCCCCChhhhcccc
Confidence 99999986 5678999999998888766655443 3778 788999999999999843
No 8
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.2e-34 Score=272.85 Aligned_cols=214 Identities=21% Similarity=0.162 Sum_probs=196.7
Q ss_pred ccccCCchHHHHHHHHcCCHHHHHHHHH----cCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517 11 HQQRQSKDELLYQWVIAGDVDAIRALRS----QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86 (508)
Q Consensus 11 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g 86 (508)
+.+|.+|.||||+|+..|+.++|++|++ .|.+++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|
T Consensus 3 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g 79 (241)
T 1k1a_A 3 TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT-TLPSVVRLLVTAGASPMAL--DRHG 79 (241)
T ss_dssp ----CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTS
T ss_pred cccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHHc-CCHHHHHHHHHcCCCcccc--CCCC
Confidence 5679999999999999999999999997 7999999999999999999998 9999999999999999998 8899
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCC----CccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccc-cCCCCHHHHH
Q 010517 87 GTPLHHAAKRGLEPTVRLLLSCGA----NALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEAL 161 (508)
Q Consensus 87 ~tpLh~A~~~g~~~~v~~Ll~~ga----~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~-~~g~tpL~~~ 161 (508)
+||||+|+..|+.+++++|++.++ +++..|..|.||||+|+..|+.+++++|+++|++++ ..+ ..|.|||| +
T Consensus 80 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~~g~t~L~-~ 156 (241)
T 1k1a_A 80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADID--AVDIKSGRSPLI-H 156 (241)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTTCCCHHH-H
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCcc--cccccCCCcHHH-H
Confidence 999999999999999999999987 889999999999999999999999999999999998 777 78999999 9
Q ss_pred HhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhh
Q 010517 162 APQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA 240 (508)
Q Consensus 162 A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~ 240 (508)
|+..++.+++++|+++|++++..+..+.++++.++..+....+..|+. +++| ++.+|..|+||+++|..
T Consensus 157 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------~ga~--~~~~~~~g~tpl~~A~~ 225 (241)
T 1k1a_A 157 AVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR--------SGAD--SSLKNCHNDTPLMVARS 225 (241)
T ss_dssp HHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH--------TTCC--TTCCCTTSCCTTTTCSS
T ss_pred HHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHh--------cCCC--CCCcCCCCCCHHHHHHh
Confidence 999999999999999999999999999999999999888766655544 3677 78899999999999975
No 9
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=100.00 E-value=3.1e-34 Score=289.57 Aligned_cols=231 Identities=15% Similarity=0.079 Sum_probs=204.8
Q ss_pred ccccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCC
Q 010517 5 LNSMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGG 84 (508)
Q Consensus 5 ~~~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~ 84 (508)
+..++.+.+|.+|.||||+|+..|+.++|++||++|++++.+|..|.||||+|+.. |+.++|++|+++|++++ +.
T Consensus 8 ~~~~~~~~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~----~~ 82 (364)
T 3ljn_A 8 FPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKF-GCVDTAKYLASVGEVHS----LW 82 (364)
T ss_dssp --------CCHHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-CCHHHHHHHHHHCCCCC----CB
T ss_pred ccCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCcHHHHHHHc-CCHHHHHHHHHCCCCcc----cc
Confidence 45677888999999999999999999999999999999999999999999999998 99999999999999776 45
Q ss_pred CCCcHHHHHHHcCCHHHHHHHHHC----CCCccc-----------------cCCCCCcHHHHHHHhC--CHHHHHHHHHc
Q 010517 85 RGGTPLHHAAKRGLEPTVRLLLSC----GANALV-----------------RNDDCHTALGVARIKG--HINVVRAIESH 141 (508)
Q Consensus 85 ~g~tpLh~A~~~g~~~~v~~Ll~~----ga~~~~-----------------~d~~g~TpLh~A~~~g--~~~~v~~Ll~~ 141 (508)
.|+||||+|+..|+.+++++|+++ |++++. .|..|.||||+|+..| +.+++++|+++
T Consensus 83 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ 162 (364)
T 3ljn_A 83 HGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQL 162 (364)
T ss_dssp TTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHc
Confidence 799999999999999999999999 888877 8899999999999999 99999999999
Q ss_pred CCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCC-----CCCCCccccccccccccccChHHHHHHHHhhhcCCC
Q 010517 142 ICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA-----NPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPK 216 (508)
Q Consensus 142 ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~-----~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~ 216 (508)
|++++ .+|..|.|||| +|+..|+.+++++|+++|++ ++..+..+.++++.++..++...+..|+
T Consensus 163 ga~~~--~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll-------- 231 (364)
T 3ljn_A 163 GASPT--AKDKADETPLM-RAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFV-------- 231 (364)
T ss_dssp TCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHH--------
T ss_pred CCCCc--ccCCCCCCHHH-HHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHH--------
Confidence 99999 89999999999 99999999999999999998 8888889999999999998866555444
Q ss_pred CCCCCCcceeccCCCcchhHhhhhcCCChhHHHHHHHh
Q 010517 217 FHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNA 254 (508)
Q Consensus 217 ~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~~l~~l~~~ 254 (508)
.+++| ++..|..|.|||++|+.. +....++.|+..
T Consensus 232 ~~gad--~~~~d~~g~tpL~~A~~~-g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 232 EMGID--VNMEDNEHTVPLYLSVRA-AMVLLTKELLQK 266 (364)
T ss_dssp TTTCC--TTCCCTTSCCHHHHHHHT-CCHHHHHHHHHH
T ss_pred HcCCC--CCCCCCCCCCHHHHHHHh-ChHHHHHHHHHc
Confidence 34778 788999999999999865 667777777744
No 10
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=100.00 E-value=8.4e-34 Score=266.61 Aligned_cols=212 Identities=17% Similarity=0.122 Sum_probs=192.6
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCC-ccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccC-CCCCCCcHHHHHH
Q 010517 17 KDELLYQWVIAGDVDAIRALRSQGASLE-WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR-PGGRGGTPLHHAA 94 (508)
Q Consensus 17 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~-~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~-~d~~g~tpLh~A~ 94 (508)
|+||||+|+..|+.++|+.|++.|.++. .+|..|.||||+|+.. |+.+++++|+++|++++... .+..|+||||+|+
T Consensus 2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~ 80 (228)
T 2dzn_A 2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSF-QAHEITSFLLSKMENVNLDDYPDDSGWTPFHIAC 80 (228)
T ss_dssp -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHH
T ss_pred CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHc-CCHHHHHHHHhccccccccccCCCCCCCHHHHHH
Confidence 7899999999999999999999998765 4899999999999998 99999999999995554432 3889999999999
Q ss_pred HcCCHHHHHHHHHCC--CCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHH
Q 010517 95 KRGLEPTVRLLLSCG--ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV 172 (508)
Q Consensus 95 ~~g~~~~v~~Ll~~g--a~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~ 172 (508)
..|+.+++++|+++| ++++..|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.++++
T Consensus 81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~ 157 (228)
T 2dzn_A 81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVR--IKDKFNQIPLH-RAASVGSLKLIE 157 (228)
T ss_dssp HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHH
Confidence 999999999999998 8999999999999999999999999999999999999 89999999999 999999999999
Q ss_pred HhhhCC-CCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhc
Q 010517 173 VVIPCG-TANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN 241 (508)
Q Consensus 173 ~Ll~~g-~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~ 241 (508)
+|+++| ++++..+..+.++++.++..++...+..|+... ++| ++.+|..|+||+++|...
T Consensus 158 ~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~-------ga~--~~~~~~~g~t~l~~A~~~ 218 (228)
T 2dzn_A 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY-------GAE--YDLVDNKGAKAEDVALNE 218 (228)
T ss_dssp HHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHH-------CCC--SCCBCTTSCBGGGGCSST
T ss_pred HHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhc-------CCC--CCccCCCCCcHHHHHHHH
Confidence 999999 999999999999999999999887777666332 677 788999999999999643
No 11
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.1e-34 Score=277.34 Aligned_cols=216 Identities=21% Similarity=0.203 Sum_probs=171.1
Q ss_pred ccccCCchHHHHHHHHcCCHHHHHHHHHcCCC--------CCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCC
Q 010517 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGAS--------LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRP 82 (508)
Q Consensus 11 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~--------~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~ 82 (508)
.++|..+.++|+.|+..|+.++|++||+.|++ ++..|..|.||||+|+..++...++++|++.|+++|.+
T Consensus 5 ~kkd~~~~~~L~~A~~~G~~~~v~~LL~~~~~~~~~~~~~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~-- 82 (269)
T 4b93_B 5 TKKDYREVEKLLRAVADGDLEMVRYLLEWTEEDLEDAEDTVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVT-- 82 (269)
T ss_dssp --CCCHHHHHHHHHHHTTCHHHHHHHHTCC----------------------------------------CCCCTTCC--
T ss_pred cccCccchhHHHHHHHcCCHHHHHHHHHCCCcccccccccccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCc--
Confidence 45688899999999999999999999999875 46678889999999998734456899999999999998
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHH
Q 010517 83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALA 162 (508)
Q Consensus 83 d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A 162 (508)
|..|+||||+|+..|+.++|++|++.|++++..+..|.||||+|+..++.+++++|++.|++++ .+|..|+|||| +|
T Consensus 83 d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~~n--~~d~~g~TpL~-~A 159 (269)
T 4b93_B 83 SQDGSSPLHVAALHGRADLIPLLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN--KKDLSGNTPLI-YA 159 (269)
T ss_dssp CTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTCCCHHH-HH
T ss_pred CCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCccCCCCCCccccccccChHHHHHHHHHCCCCCC--CCCCCCCCHHH-HH
Confidence 8899999999999999999999999999999999999999999999999999999999999999 89999999999 99
Q ss_pred hhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhc
Q 010517 163 PQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN 241 (508)
Q Consensus 163 ~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~ 241 (508)
+..|+.+++++|+++|++++..+..+.++++.++..++...+..|+. +|+| ++++|..|+|||++|+.+
T Consensus 160 ~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~--------~Gad--~~~~d~~G~TpL~~A~~~ 228 (269)
T 4b93_B 160 CSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLL--------HGAS--VQVLNKRQRTAVDCAEQN 228 (269)
T ss_dssp HHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH--------TTCC--SCCCCTTSCCSGGGSCTT
T ss_pred HHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHH--------CCCC--CCCcCCCCCCHHHHHHhC
Confidence 99999999999999999999999999999999999998776665543 3778 888999999999999754
No 12
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.1e-32 Score=267.07 Aligned_cols=229 Identities=21% Similarity=0.177 Sum_probs=186.8
Q ss_pred Ccccc-cCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCC
Q 010517 9 NQHQQ-RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87 (508)
Q Consensus 9 ~~~~~-~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~ 87 (508)
+.+.+ +..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.. |..|+
T Consensus 30 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~ 106 (285)
T 1wdy_A 30 NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA-GSVKLLKLFLSKGADVNEC--DFYGF 106 (285)
T ss_dssp CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCB--CTTCC
T ss_pred CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CcccC
Confidence 34444 67788888888888888888888888888888888888888888887 8888888888888888887 77888
Q ss_pred cHHHHHHHcCCHHHHHHHHHCCCCcccc----------CCCCCcHHHHHHHhCCHHHHHHHHHc-CCcccccccccCCCC
Q 010517 88 TPLHHAAKRGLEPTVRLLLSCGANALVR----------NDDCHTALGVARIKGHINVVRAIESH-ICYFCGWLREFYGPS 156 (508)
Q Consensus 88 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~----------d~~g~TpLh~A~~~g~~~~v~~Ll~~-ga~~~~~~~~~~g~t 156 (508)
||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|+.+++++|++. |++++ .+|..|.|
T Consensus 107 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~g~t 184 (285)
T 1wdy_A 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN--ACDNMGRN 184 (285)
T ss_dssp BHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTT--CCCTTSCC
T ss_pred CHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCC--ccCCCCCC
Confidence 8888888888888888888888888776 77788888888888888888888887 88888 78888888
Q ss_pred HHHHHHhhcCC----HHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCc
Q 010517 157 FLEALAPQLMS----RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATK 232 (508)
Q Consensus 157 pL~~~A~~~~~----~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~ 232 (508)
||| .|+..++ .+++++|+++|++++..+..+.++++.++..++...+..|+.. .+.+ ++.+|..|+
T Consensus 185 ~l~-~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-------~g~~--~~~~~~~g~ 254 (285)
T 1wdy_A 185 ALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ-------EHIE--INDTDSDGK 254 (285)
T ss_dssp HHH-HHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHS-------SSCC--TTCCCTTSC
T ss_pred HHH-HHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhc-------cCCC--ccccCCCCC
Confidence 888 8888888 8888888888888888887888888888888776666555442 2566 777888888
Q ss_pred chhHhhhhcCCChhHHHHHHH
Q 010517 233 IRYKFASANEGDKHQLQWLDN 253 (508)
Q Consensus 233 t~l~~a~~~~~~~~~l~~l~~ 253 (508)
||+++|... +....++.|..
T Consensus 255 t~l~~A~~~-~~~~i~~~Ll~ 274 (285)
T 1wdy_A 255 TALLLAVEL-KLKKIAELLCK 274 (285)
T ss_dssp CHHHHHHHT-TCHHHHHHHHH
T ss_pred cHHHHHHHc-CcHHHHHHHHH
Confidence 998888764 45566666653
No 13
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=100.00 E-value=3.5e-33 Score=279.22 Aligned_cols=217 Identities=22% Similarity=0.152 Sum_probs=199.0
Q ss_pred ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86 (508)
Q Consensus 7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g 86 (508)
..+.+.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.. |..|
T Consensus 48 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~iv~~Ll~~g~~~~~~--~~~g 124 (351)
T 3utm_A 48 NVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSY-GHYEVTELLLKHGACVNAM--DLWQ 124 (351)
T ss_dssp TTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTC
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHC-CCHHHHHHHHHCCCCCCCC--CCCC
Confidence 345678899999999999999999999999999999999999999999999998 9999999999999999998 8899
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCccccC--------------------------------------------------
Q 010517 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRN-------------------------------------------------- 116 (508)
Q Consensus 87 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d-------------------------------------------------- 116 (508)
+||||+|+..|+.+++++|+++|++++..+
T Consensus 125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 204 (351)
T 3utm_A 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN 204 (351)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc
Confidence 999999999999999999999999987654
Q ss_pred ----CCCCcHHHHHHHh---CCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCcccc
Q 010517 117 ----DDCHTALGVARIK---GHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFE 189 (508)
Q Consensus 117 ----~~g~TpLh~A~~~---g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~ 189 (508)
..|.||||+|+.. +..+++++|++.|++++ .+|.+|.|||| +|+..|+.+++++|+++|++++..+..+.
T Consensus 205 ~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~ 281 (351)
T 3utm_A 205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN--EKNKDFMTPLH-VAAERAHNDVMEVLHKHGAKMNALDSLGQ 281 (351)
T ss_dssp CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSC
T ss_pred ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCC
Confidence 5677999999998 55899999999999999 89999999999 99999999999999999999999999999
Q ss_pred ccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhh
Q 010517 190 LVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFAS 239 (508)
Q Consensus 190 ~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~ 239 (508)
++++.++..++...+..|+. +++| +++.|..|+|+++++.
T Consensus 282 t~L~~A~~~~~~~~v~~Ll~--------~gad--~~~~~~~g~tal~~a~ 321 (351)
T 3utm_A 282 TALHRAALAGHLQTCRLLLS--------YGSD--PSIISLQGFTAAQMGN 321 (351)
T ss_dssp CHHHHHHHHTCHHHHHHHHH--------TTCC--TTCCCTTSCCHHHHSC
T ss_pred CHHHHHHHcCcHHHHHHHHH--------cCCC--CCCcCCCCCChhhhhh
Confidence 99999999888766665544 3777 7789999999999984
No 14
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=100.00 E-value=1.1e-34 Score=274.62 Aligned_cols=216 Identities=20% Similarity=0.201 Sum_probs=189.5
Q ss_pred ccccCCchHHHHHHHHcCCHHHHHHHHHcCC----CCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGA----SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86 (508)
Q Consensus 11 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~----~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g 86 (508)
+.+|.+|.||||+|+..|+.++|++|++.+. +++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|
T Consensus 2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g 78 (236)
T 1ikn_D 2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVIT-NQPEIAEALLGAGCDPELR--DFRG 78 (236)
T ss_dssp -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCCCCTTCCCHHHHHHHT-TCHHHHHCCCSCCCCSCCC--CTTC
T ss_pred CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCC
Confidence 5678999999999999999999999998765 7899999999999999998 9999999999999999998 8899
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCC------ccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCccccccccc-CCCCHHH
Q 010517 87 GTPLHHAAKRGLEPTVRLLLSCGAN------ALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREF-YGPSFLE 159 (508)
Q Consensus 87 ~tpLh~A~~~g~~~~v~~Ll~~ga~------~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~-~g~tpL~ 159 (508)
+||||+|+..|+.+++++|++.|++ ++..+..|.||||+|+..|+.+++++|+++|++++ .++. .|.||||
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~~g~tpL~ 156 (236)
T 1ikn_D 79 NTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVN--AQEPCNGRTALH 156 (236)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTT--CCCTTTCCCHHH
T ss_pred CCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCCHHH
Confidence 9999999999999999999999876 57788899999999999999999999999999999 8887 9999999
Q ss_pred HHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhh
Q 010517 160 ALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFAS 239 (508)
Q Consensus 160 ~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~ 239 (508)
+|+..++.+++++|+++|++++..+..+.++++.++..++...+..|+ .+++++.....+..+.|+++..+
T Consensus 157 -~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll--------~~ga~~~~~~~~~~~~~~~~~~~ 227 (236)
T 1ikn_D 157 -LAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLG--------QLTLENLQMLPESEDEESYDTES 227 (236)
T ss_dssp -HHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHH--------TTSCGGGSSCCCCCTTTCCCCC-
T ss_pred -HHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHH--------HcchhhhhcCCccchHHHHhhhc
Confidence 999999999999999999999999999999999999988865544433 34777777788889999888765
Q ss_pred h
Q 010517 240 A 240 (508)
Q Consensus 240 ~ 240 (508)
+
T Consensus 228 ~ 228 (236)
T 1ikn_D 228 E 228 (236)
T ss_dssp -
T ss_pred c
Confidence 4
No 15
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A
Probab=100.00 E-value=3.9e-33 Score=267.08 Aligned_cols=190 Identities=20% Similarity=0.098 Sum_probs=181.3
Q ss_pred cccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCC-CCcccCCCCCCCcHH
Q 010517 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRGGTPL 90 (508)
Q Consensus 12 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga-~~n~~~~d~~g~tpL 90 (508)
.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|+ +++.+ +..|.|||
T Consensus 52 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~--~~~g~t~L 128 (253)
T 1yyh_A 52 QTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA-DAQGVFQILIRNRATDLDAR--MHDGTTPL 128 (253)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHSTTSCTTCC--CTTCCCHH
T ss_pred ccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCcccc--CCCCCcHH
Confidence 4588999999999999999999999999999999999999999999998 99999999999987 88888 88999999
Q ss_pred HHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHH
Q 010517 91 HHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKI 170 (508)
Q Consensus 91 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i 170 (508)
|+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.++
T Consensus 129 ~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpL~-~A~~~~~~~~ 205 (253)
T 1yyh_A 129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLF-LAAREGSYET 205 (253)
T ss_dssp HHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHH
T ss_pred HHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999 89999999999 9999999999
Q ss_pred HHHhhhCCCCCCCCCccccccccccccccChHHHHHH
Q 010517 171 WVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL 207 (508)
Q Consensus 171 ~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l 207 (508)
+++|+++|++.+.++..++++++.+.+.++.+.+..+
T Consensus 206 v~~Ll~~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l 242 (253)
T 1yyh_A 206 AKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242 (253)
T ss_dssp HHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHcCCCccccccCCCCHHHHHHHcCCHHHHHHH
Confidence 9999999999999999999999999998886665543
No 16
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.3e-32 Score=259.05 Aligned_cols=211 Identities=18% Similarity=0.199 Sum_probs=192.3
Q ss_pred cCCchHHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHH
Q 010517 14 RQSKDELLYQWVIAGDVDAIRALRSQGAS-LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92 (508)
Q Consensus 14 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~ 92 (508)
+..+.++||+|+..|+.+.|+.|++.+.. ++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+
T Consensus 3 ~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~ 79 (231)
T 3aji_A 3 GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSA-GHTEIVEFLLQLGVPVNDK--DDAGWSPLHI 79 (231)
T ss_dssp CCCSSSHHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSCCC--CTTSCCHHHH
T ss_pred CccccchHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHc-CcHHHHHHHHHhCCCCCCc--CCCCCCHHHH
Confidence 45678999999999999999999997754 678899999999999998 9999999999999999988 8899999999
Q ss_pred HHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHH
Q 010517 93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWV 172 (508)
Q Consensus 93 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~ 172 (508)
|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .++..|.|||| +|+..++.++++
T Consensus 80 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~ 156 (231)
T 3aji_A 80 AASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD--AKDHYDATAMH-RAAAKGNLKMVH 156 (231)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHH
T ss_pred HHHcCHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCcHHH-HHHHcCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 89999999999 999999999999
Q ss_pred HhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhh
Q 010517 173 VVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASA 240 (508)
Q Consensus 173 ~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~ 240 (508)
+|+++|++++..+..+.++++.++..++...+..|+. +++| ++.+|..|+||+++|..
T Consensus 157 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------~ga~--~~~~~~~g~t~l~~A~~ 214 (231)
T 3aji_A 157 ILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT--------QGAS--IYIENKEEKTPLQVAKG 214 (231)
T ss_dssp HHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH--------TTCC--SCCCCTTSCCHHHHSCH
T ss_pred HHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHH--------CCCC--CCCCCCCCCCHHHHHHh
Confidence 9999999999999899999999998888665554443 3677 77889999999999964
No 17
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=100.00 E-value=1.7e-32 Score=256.83 Aligned_cols=192 Identities=19% Similarity=0.081 Sum_probs=182.2
Q ss_pred ccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCC-CCcccCCCCCCCcHHH
Q 010517 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRGGTPLH 91 (508)
Q Consensus 13 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga-~~n~~~~d~~g~tpLh 91 (508)
.|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++++ +++.. +..|.||||
T Consensus 21 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~--~~~g~t~L~ 97 (223)
T 2f8y_A 21 TDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSA-DAQGVFQILIRNRATDLDAR--MHDGTTPLI 97 (223)
T ss_dssp CTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHBTTSCTTCC--CTTCCCHHH
T ss_pred cCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCcccC--CCCCCcHHH
Confidence 488999999999999999999999999999999999999999999998 99999999999987 88887 889999999
Q ss_pred HHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHH
Q 010517 92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW 171 (508)
Q Consensus 92 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~ 171 (508)
+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++
T Consensus 98 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v 174 (223)
T 2f8y_A 98 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD--MQNNREETPLF-LAAREGSYETA 174 (223)
T ss_dssp HHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHHTCHHHH
T ss_pred HHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCcCHHH-HHHHcCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999 89999999999 99999999999
Q ss_pred HHhhhCCCCCCCCCccccccccccccccChHHHHHHHHh
Q 010517 172 VVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKA 210 (508)
Q Consensus 172 ~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~ 210 (508)
++|+++|++.+..+..+.++++.+.+.++.+.+..|+..
T Consensus 175 ~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~ 213 (223)
T 2f8y_A 175 KVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY 213 (223)
T ss_dssp HHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHHc
Confidence 999999999999998999999999998887766655544
No 18
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=100.00 E-value=1.2e-32 Score=259.25 Aligned_cols=186 Identities=22% Similarity=0.206 Sum_probs=178.0
Q ss_pred cccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcH
Q 010517 10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89 (508)
Q Consensus 10 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tp 89 (508)
.+.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||
T Consensus 33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~ 109 (231)
T 3aji_A 33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA-GXDEIVKALLVKGAHVNAV--NQNGCTP 109 (231)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCH
T ss_pred hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCCcCCCCCCHHHHHHHc-CHHHHHHHHHHcCCCCCCC--CCCCCCH
Confidence 466789999999999999999999999999999999999999999999998 9999999999999999998 8899999
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHH
Q 010517 90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRK 169 (508)
Q Consensus 90 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~ 169 (508)
||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+
T Consensus 110 L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~ 186 (231)
T 3aji_A 110 LHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTN--IQDTEGNTPLH-LACDEERVE 186 (231)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcc--ccCCCCCCHHH-HHHHCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999 89999999999 999999999
Q ss_pred HHHHhhhCCCCCCCCCccccccccccccccCh
Q 010517 170 IWVVVIPCGTANPSKPLRFELVIYPSLQDVQP 201 (508)
Q Consensus 170 i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~ 201 (508)
++++|+++|++++.++..+.++++.+.+....
T Consensus 187 ~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~ 218 (231)
T 3aji_A 187 EAKFLVTQGASIYIENKEEKTPLQVAKGGLGL 218 (231)
T ss_dssp HHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHH
T ss_pred HHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHH
Confidence 99999999999999998999999988765443
No 19
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=100.00 E-value=4.1e-33 Score=282.52 Aligned_cols=230 Identities=16% Similarity=0.140 Sum_probs=205.5
Q ss_pred cCccccc-CCchHHHHHHHHcCCHHHHHHHH--------HcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCc
Q 010517 8 MNQHQQR-QSKDELLYQWVIAGDVDAIRALR--------SQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANIN 78 (508)
Q Consensus 8 ~~~~~~~-~~g~t~L~~Aa~~g~~~~v~~Ll--------~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n 78 (508)
..++.+| ..|.||||+|+..|+.++|++|+ +.|+++|.+|..|.||||+|+.. |+.++|++|+++|++++
T Consensus 115 ~~~n~~d~~~g~t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~-g~~~iv~~Ll~~ga~~~ 193 (373)
T 2fo1_E 115 ESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA-RRRRLVAYLMKAGADPT 193 (373)
T ss_dssp TTTTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCSC
T ss_pred ccccccCCcCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHc-ChHHHHHHHHHCCCCCc
Confidence 4566777 78999999999999998887776 89999999999999999999998 99999999999999999
Q ss_pred ccCCCCCCCcHHHHHHHcCCHHHHHHHHHCC---CCccccCCCCCcHHHHHHHhC---CHHHHHHHHHcCCcccc-----
Q 010517 79 AYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG---ANALVRNDDCHTALGVARIKG---HINVVRAIESHICYFCG----- 147 (508)
Q Consensus 79 ~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g---a~~~~~d~~g~TpLh~A~~~g---~~~~v~~Ll~~ga~~~~----- 147 (508)
.+ |..|.||||+|+..|+.+++++|++++ ++++..|..|.||||+|+..+ +.+++++|+++|++++.
T Consensus 194 ~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~ 271 (373)
T 2fo1_E 194 IY--NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAAR 271 (373)
T ss_dssp CC--CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGG
T ss_pred cc--CCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccc
Confidence 98 889999999999999999999999998 899999999999999999998 89999999999999871
Q ss_pred -cccccCCCCHHHHHHhhcCCHHHHHHhhhCC-CCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcce
Q 010517 148 -WLREFYGPSFLEALAPQLMSRKIWVVVIPCG-TANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLT 225 (508)
Q Consensus 148 -~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g-~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~ 225 (508)
..+|..|.|||| +|+..|+.+++++|++++ ++++..+..+.++++.++..++...+..|+. ++++ ++
T Consensus 272 ~~~~d~~g~t~Lh-~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~--------~gad--~~ 340 (373)
T 2fo1_E 272 KDSEKYKGRTALH-YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ--------QGAS--VE 340 (373)
T ss_dssp TSSSSCCCCCTHH-HHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHH--------TTCC--SS
T ss_pred cCcccccCCCHHH-HHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHH--------cCCC--cc
Confidence 125779999999 999999999999999886 9999999999999999999988766665544 3777 88
Q ss_pred eccCCCcchhHhhhhcCCChhHHHHHH
Q 010517 226 IYDQATKIRYKFASANEGDKHQLQWLD 252 (508)
Q Consensus 226 ~~d~~~~t~l~~a~~~~~~~~~l~~l~ 252 (508)
.+|..|+|++++|... +....++.|.
T Consensus 341 ~~d~~g~t~l~~A~~~-g~~~iv~~Ll 366 (373)
T 2fo1_E 341 AVDATDHTARQLAQAN-NHHNIVDIFD 366 (373)
T ss_dssp CCCSSSCCHHHHHHHT-TCHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHc-CCHHHHHHHH
Confidence 8999999999999864 5566666665
No 20
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=1.4e-32 Score=284.27 Aligned_cols=230 Identities=20% Similarity=0.148 Sum_probs=191.8
Q ss_pred ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86 (508)
Q Consensus 7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g 86 (508)
+.+++..+..|.||||+|+..|+.++|++|+++|++++..|..|.||||+|+.. |+.+++++|+++|+++|.+ |..|
T Consensus 4 g~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g 80 (437)
T 1n11_A 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARA-GHTEVAKYLLQNKAKVNAK--AKDD 80 (437)
T ss_dssp -----------CCHHHHHHHHTCHHHHHHHHHTTCCSCCSSSCCCCHHHHHHHH-TCHHHHHHHHHHTCCSSCC--CTTS
T ss_pred CCCccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhCCCCCCCC--CCCC
Confidence 345677889999999999999999999999999999999999999999999998 9999999999999999988 8899
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcC
Q 010517 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM 166 (508)
Q Consensus 87 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~ 166 (508)
+||||+|+..|+.+++++|+++|++++..+..|.||||+|+..|+.+++++|++++++.+ ..+..|.|||| +|+..|
T Consensus 81 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--~~~~~g~t~L~-~A~~~g 157 (437)
T 1n11_A 81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQA--CMTKKGFTPLH-VAAKYG 157 (437)
T ss_dssp CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSC--CCCTTSCCHHH-HHHHTT
T ss_pred CCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCc--CCCCCCCCHHH-HHHHcC
Confidence 999999999999999999999999999999999999999999999999999999999988 78899999999 999999
Q ss_pred CHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcCCChh
Q 010517 167 SRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKH 246 (508)
Q Consensus 167 ~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~ 246 (508)
+.+++++|+++|++.+..+..+.++++.++..++...+..|+. .+.+ +...+..|.|+|++|+. .+...
T Consensus 158 ~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~--------~g~~--~~~~~~~g~t~L~~A~~-~~~~~ 226 (437)
T 1n11_A 158 KVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLP--------RGGS--PHSPAWNGYTPLHIAAK-QNQVE 226 (437)
T ss_dssp CHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHHHHGG--------GTCC--SCCCCTTCCCHHHHHHH-TTCHH
T ss_pred CHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHh--------CCCC--CCCcCCCCCCHHHHHHH-cCCHH
Confidence 9999999999999998888888899999988888655554332 2444 45566677778877764 34455
Q ss_pred HHHHHHH
Q 010517 247 QLQWLDN 253 (508)
Q Consensus 247 ~l~~l~~ 253 (508)
.++.|..
T Consensus 227 ~~~~Ll~ 233 (437)
T 1n11_A 227 VARSLLQ 233 (437)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555553
No 21
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D
Probab=100.00 E-value=9.2e-33 Score=267.83 Aligned_cols=185 Identities=21% Similarity=0.139 Sum_probs=162.5
Q ss_pred cccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCC-------------
Q 010517 10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN------------- 76 (508)
Q Consensus 10 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~------------- 76 (508)
++.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++
T Consensus 38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~~~ 116 (282)
T 1oy3_D 38 LDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV-RAHTCACVLLQPRPSHPRDASDTYLTQS 116 (282)
T ss_dssp GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCHHHHHTTT-TCHHHHHHHSSSCCSSCCCC--------
T ss_pred ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCcchhHhhhccCCCCchhhHHHHhhcc
Confidence 677899999999999999999999999999999999999999999999997 999999999998866
Q ss_pred ----------------------------------CcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCC-CCc
Q 010517 77 ----------------------------------INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD-CHT 121 (508)
Q Consensus 77 ----------------------------------~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~-g~T 121 (508)
++.+ |..|+||||+|+..|+.+++++|+++|++++..+.. |.|
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t 194 (282)
T 1oy3_D 117 QDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE--NYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRT 194 (282)
T ss_dssp ---------------------------CCCGGGGTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCC
T ss_pred cccCcchhcchhhhccccccchhhhhhhhhhhhcCCCc--CCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 5555 789999999999999999999999999999999864 999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccC
Q 010517 122 ALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ 200 (508)
Q Consensus 122 pLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~ 200 (508)
|||+|+..|+.+++++|+++|++++ .+|..|+|||| +|+..++.+++++|+++|++++.++..+.+++..+.....
T Consensus 195 pL~~A~~~~~~~~v~~Ll~~gad~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~a~~~~~ 270 (282)
T 1oy3_D 195 PLHLAVEAQAASVLELLLKAGADPT--ARMYGGRTPLG-SALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSD 270 (282)
T ss_dssp HHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHTSSCHHHHHHHHHTTCCCCCCC---------------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCc--ccccCCCCHHH-HHHHcCCcHHHHHHHHcCCCcCcCCCcccccccccCCccc
Confidence 9999999999999999999999999 99999999999 9999999999999999999999999889888887765443
No 22
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=4.8e-32 Score=262.65 Aligned_cols=226 Identities=21% Similarity=0.174 Sum_probs=201.6
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHHcCCCCCcc-CCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHH
Q 010517 15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWM-DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA 93 (508)
Q Consensus 15 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~-d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A 93 (508)
.+|.|+||+|++.|+.++|++|+++|++++.. +..|.||||+|+.. |+.+++++|+++|++++.+ |..|.||||+|
T Consensus 3 ~~g~~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A 79 (285)
T 1wdy_A 3 VEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-SREDIVELLLRHGADPVLR--KKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHH
T ss_pred cccchHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCccc--CCCCCCHHHHH
Confidence 36899999999999999999999999999988 78899999999998 9999999999999999998 88999999999
Q ss_pred HHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCccccccc----------ccCCCCHHHHHHh
Q 010517 94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLR----------EFYGPSFLEALAP 163 (508)
Q Consensus 94 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~----------~~~g~tpL~~~A~ 163 (508)
+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++ .+ +..|.|||| .|+
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~~~~~~~~~~~g~t~L~-~A~ 156 (285)
T 1wdy_A 80 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVN--LRRKTKEDQERLRKGGATALM-DAA 156 (285)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT--CCCCCCHHHHHTTCCCCCHHH-HHH
T ss_pred HHcCCHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcc--cccccHHHHHhhccCCCcHHH-HHH
Confidence 99999999999999999999999999999999999999999999999999988 55 788999999 999
Q ss_pred hcCCHHHHHHhhhC-CCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcC
Q 010517 164 QLMSRKIWVVVIPC-GTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANE 242 (508)
Q Consensus 164 ~~~~~~i~~~Ll~~-g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~ 242 (508)
..++.+++++|+++ |.+++..+..+.++++.++..+....+..+++..+ ..+.+ ++.+|..|.||||+|...
T Consensus 157 ~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll----~~g~~--~~~~~~~g~t~L~~A~~~- 229 (285)
T 1wdy_A 157 EKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLL----DHGAD--VNVRGERGKTPLILAVEK- 229 (285)
T ss_dssp HHTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHH----HTTCC--SSCCCTTSCCHHHHHHHT-
T ss_pred HcCCHHHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHH----HcCCC--CCCcCCCCCcHHHHHHHc-
Confidence 99999999999987 99999999899999999988777533332222222 23667 788899999999999864
Q ss_pred CChhHHHHHHH
Q 010517 243 GDKHQLQWLDN 253 (508)
Q Consensus 243 ~~~~~l~~l~~ 253 (508)
+....++.|+.
T Consensus 230 ~~~~~v~~Ll~ 240 (285)
T 1wdy_A 230 KHLGLVQRLLE 240 (285)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHh
Confidence 56777777774
No 23
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=100.00 E-value=4e-32 Score=256.85 Aligned_cols=198 Identities=21% Similarity=0.231 Sum_probs=186.8
Q ss_pred ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcC-CCCcccCCCCC
Q 010517 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELG-ANINAYRPGGR 85 (508)
Q Consensus 7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~g-a~~n~~~~d~~ 85 (508)
+.+++.++..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++| .+++.. +..
T Consensus 34 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~~~~~~~~~--~~~ 110 (237)
T 3b7b_A 34 GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKK-GHYEVVQYLLSNGQMDVNCQ--DDG 110 (237)
T ss_dssp TCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHT-TCHHHHHHHHTTTCCCTTCC--CTT
T ss_pred CCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHhCCCCCcccC--CCC
Confidence 346677889999999999999999999999999999999999999999999998 9999999999999 889988 889
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhc
Q 010517 86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL 165 (508)
Q Consensus 86 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~ 165 (508)
|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..
T Consensus 111 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~ 187 (237)
T 3b7b_A 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLH--AVNIHGDSPLH-IAARE 187 (237)
T ss_dssp SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHHHHTTTCCTT--CCCTTCCCHHH-HHHHT
T ss_pred CCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999 89999999999 99999
Q ss_pred CCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHh
Q 010517 166 MSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKA 210 (508)
Q Consensus 166 ~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~ 210 (508)
++.+++++|+++|++++.++..+.++++.+...++...+..+.+.
T Consensus 188 ~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~ 232 (237)
T 3b7b_A 188 NRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKA 232 (237)
T ss_dssp TCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHH
T ss_pred CCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999988887666665544
No 24
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=100.00 E-value=2.7e-32 Score=258.38 Aligned_cols=189 Identities=20% Similarity=0.169 Sum_probs=179.9
Q ss_pred ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCC----CCcccCC
Q 010517 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGA----NINAYRP 82 (508)
Q Consensus 7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga----~~n~~~~ 82 (508)
..+++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++++ +++..
T Consensus 36 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~~~~-- 112 (241)
T 1k1a_A 36 GRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEH-RSPTCLRALLDSAAPGTLDLEAR-- 112 (241)
T ss_dssp TCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCTTSCCTTCC--
T ss_pred CCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcccccccc--
Confidence 456778899999999999999999999999999999999999999999999998 99999999999998 78877
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccC-CCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 010517 83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEAL 161 (508)
Q Consensus 83 d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~ 161 (508)
|..|+||||+|+..|+.+++++|+++|++++..+ ..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +
T Consensus 113 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~ 189 (241)
T 1k1a_A 113 NYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVN--AQMYSGSSALH-S 189 (241)
T ss_dssp CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CBCTTSCBHHH-H
T ss_pred CcCCCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-H
Confidence 8899999999999999999999999999999998 899999999999999999999999999999 89999999999 9
Q ss_pred HhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccCh
Q 010517 162 APQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQP 201 (508)
Q Consensus 162 A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~ 201 (508)
|+..++.+++++|+++|++++.++..+.++++.+...+..
T Consensus 190 A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~ 229 (241)
T 1k1a_A 190 ASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVI 229 (241)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHH
T ss_pred HHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHHHHHhcCcH
Confidence 9999999999999999999999999999999999877663
No 25
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=100.00 E-value=7e-33 Score=267.86 Aligned_cols=184 Identities=20% Similarity=0.176 Sum_probs=150.8
Q ss_pred cccccCCchHHHHHHHHcCCHH-HHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCc
Q 010517 10 QHQQRQSKDELLYQWVIAGDVD-AIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT 88 (508)
Q Consensus 10 ~~~~~~~g~t~L~~Aa~~g~~~-~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~t 88 (508)
.+..+..|.||||+|+..++.+ ++++|++.|+++|.+|.+|+||||+|+.. |+.++|++|++.|++++.+ +..|.|
T Consensus 45 ~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~-g~~~~v~~Ll~~~a~~~~~--~~~g~t 121 (269)
T 4b93_B 45 VSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNVTSQDGSSPLHVAALH-GRADLIPLLLKHGANAGAR--NADQAV 121 (269)
T ss_dssp ------------------------------CCCCTTCCCTTSCCHHHHHHHT-TCTTHHHHHHHTTCCTTCC--CTTCCC
T ss_pred ccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CcHHHHHHHHhcCCCcCcc--CCCCCC
Confidence 4567888999999999888764 88999999999999999999999999998 9999999999999999998 889999
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCH
Q 010517 89 PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR 168 (508)
Q Consensus 89 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~ 168 (508)
|||+|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++ .++..|.|||| +|+..|+.
T Consensus 122 ~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn--~~~~~g~t~Lh-~A~~~g~~ 198 (269)
T 4b93_B 122 PLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASIN--ASNNKGNTALH-EAVIEKHV 198 (269)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTT--CBCTTSCBHHH-HHHHTTCH
T ss_pred ccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCC--ccccCCCcHHH-HHHHcCCH
Confidence 9999999999999999999999999999999999999999999999999999999999 89999999999 99999999
Q ss_pred HHHHHhhhCCCCCCCCCcccccccccccccc
Q 010517 169 KIWVVVIPCGTANPSKPLRFELVIYPSLQDV 199 (508)
Q Consensus 169 ~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~ 199 (508)
+++++|+++|++++.++..++++++.|.+.+
T Consensus 199 ~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~~ 229 (269)
T 4b93_B 199 FVVELLLLHGASVQVLNKRQRTAVDCAEQNS 229 (269)
T ss_dssp HHHHHHHHTTCCSCCCCTTSCCSGGGSCTTC
T ss_pred HHHHHHHHCCCCCCCcCCCCCCHHHHHHhCC
Confidence 9999999999999999999999999997654
No 26
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=100.00 E-value=3.5e-32 Score=256.44 Aligned_cols=191 Identities=18% Similarity=0.113 Sum_probs=176.6
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCC-----cccCCCCCCCcH
Q 010517 16 SKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANI-----NAYRPGGRGGTP 89 (508)
Q Consensus 16 ~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~-----n~~~~d~~g~tp 89 (508)
.|+||||+|+..|+.++|++|++. |++++.+|..|+||||+|+.. |+.+++++|+++|+++ +.+ |..|+||
T Consensus 2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~--~~~g~t~ 78 (232)
T 2rfa_A 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALY-DNLEAAMVLMEAAPELVFEPMTSE--LYEGQTA 78 (232)
T ss_dssp CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHCGGGGGCCCCST--TTTTCCH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCHHHHHHHHHcCchhcccccccc--CCCCcCH
Confidence 589999999999999999999997 999999999999999999998 9999999999999987 444 7789999
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCccccCC-------------CCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCC
Q 010517 90 LHHAAKRGLEPTVRLLLSCGANALVRND-------------DCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPS 156 (508)
Q Consensus 90 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~-------------~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~t 156 (508)
||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.+++++|+++|++++ .+|.+|.|
T Consensus 79 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~t 156 (232)
T 2rfa_A 79 LHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIR--AQDSLGNT 156 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTSCC
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCC
Confidence 9999999999999999999999988765 79999999999999999999999999999 89999999
Q ss_pred HHHHHHhhcCCHHHH----HHhhhCCCCC------CCCCccccccccccccccChHHHHHHHHhhh
Q 010517 157 FLEALAPQLMSRKIW----VVVIPCGTAN------PSKPLRFELVIYPSLQDVQPRAVIALWKAKI 212 (508)
Q Consensus 157 pL~~~A~~~~~~~i~----~~Ll~~g~~~------~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~ 212 (508)
||| +|+..++.+++ ++|+++|++. +..+..+.++++.+++.++...+..|+....
T Consensus 157 ~L~-~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~g~ 221 (232)
T 2rfa_A 157 VLH-ILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRK 221 (232)
T ss_dssp HHH-HHHTCSCHHHHHHHHHHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHH-HHHHcCChHHHHHHHHHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhcCc
Confidence 999 99999999988 9999999987 4677789999999999999887777766543
No 27
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=100.00 E-value=6.8e-32 Score=269.49 Aligned_cols=227 Identities=21% Similarity=0.163 Sum_probs=192.8
Q ss_pred ccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCChHHHHHHHhCCCHHHHHHHHHcCCCCcccC----------
Q 010517 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYR---------- 81 (508)
Q Consensus 13 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~-~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~---------- 81 (508)
.+.+|.|+||.|++.|++++|++||++|+|+|.++. .|+||||+|+.. |+.++|++||++|++++.++
T Consensus 21 ~~~~~~t~L~~Av~~g~~~~V~~LL~~Gadvn~~~~~~g~TpLh~A~~~-g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~ 99 (337)
T 4g8k_A 21 AAVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQM-SREDIVELLLRHGADPVLRKKNGATPFILA 99 (337)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred CCCCCChHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCcCHHHHHHHc-CCHHHHHHHHHcCCchhhhccCCCchhHHH
Confidence 345689999999999999999999999999999876 599999999998 99999999999998776532
Q ss_pred ---------------------CCCCCCcHHHHHHHcCCHHHHHHHHHCCCCcccc----------CCCCCcHHHHHHHhC
Q 010517 82 ---------------------PGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVR----------NDDCHTALGVARIKG 130 (508)
Q Consensus 82 ---------------------~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~----------d~~g~TpLh~A~~~g 130 (508)
.|..|+||||+|+..|+.+++++|+++|++++.. +..|.||||+|+..|
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g 179 (337)
T 4g8k_A 100 AIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 179 (337)
T ss_dssp HHHTCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHT
T ss_pred HhcccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCC
Confidence 2567899999999999999999999999988653 456899999999999
Q ss_pred CHHHHHHHHH-cCCcccccccccCCCCHHHHHHhhcCC----HHHHHHhhhCCCCCCCCCccccccccccccccChHHHH
Q 010517 131 HINVVRAIES-HICYFCGWLREFYGPSFLEALAPQLMS----RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVI 205 (508)
Q Consensus 131 ~~~~v~~Ll~-~ga~~~~~~~~~~g~tpL~~~A~~~~~----~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~ 205 (508)
+.++|++|++ .|++++ .+|..|.|+|+ .++..+. ..++++|+++|++++.++..+.++++.++..+....+.
T Consensus 180 ~~~~v~~LL~~~gad~n--~~d~~g~t~l~-~~~~~~~~~~~~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~ 256 (337)
T 4g8k_A 180 HVEVLKILLDEMGADVN--ACDNMGRNALI-HALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQ 256 (337)
T ss_dssp CHHHHHHHHHHSCCCTT--CCCTTSCCHHH-HHHHHSCTTTHHHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHHhccCCCcC--ccCCCCCcHHH-HHHHHcCcccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHH
Confidence 9999999995 589999 89999999999 5544333 46889999999999999989999999999988877666
Q ss_pred HHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcCCChhHHHHHHH
Q 010517 206 ALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDN 253 (508)
Q Consensus 206 ~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~~l~~l~~ 253 (508)
.|+.. .+.+ ++.+|..|+||||+|+.. +....++.|+.
T Consensus 257 ~Ll~~-------~~~~--vn~~d~~G~TpL~~A~~~-g~~~iv~~Ll~ 294 (337)
T 4g8k_A 257 RLLEQ-------EHIE--INDTDSDGKTALLLAVEL-KLKKIAELLCK 294 (337)
T ss_dssp HHHTS-------TTCC--TTCBCTTSCBHHHHHHHT-TCHHHHHHHHT
T ss_pred HHHHh-------cCCc--ccCcCCCCCCHHHHHHHc-CCHHHHHHHHH
Confidence 54432 2566 888999999999999864 56666666663
No 28
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=100.00 E-value=5.4e-32 Score=279.92 Aligned_cols=228 Identities=22% Similarity=0.188 Sum_probs=193.7
Q ss_pred cCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCC
Q 010517 8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87 (508)
Q Consensus 8 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~ 87 (508)
.+.+.++..|.||||+|+..|+.++|++|+++|++++..+..|.||||+|+.. |+.+++++|+++|++++.. +..|.
T Consensus 170 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~ 246 (437)
T 1n11_A 170 AHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQ-NQVEVARSLLQYGGSANAE--SVQGV 246 (437)
T ss_dssp CCTTCCCSSCCCHHHHHHHTTCHHHHHHHGGGTCCSCCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCC
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCC
Confidence 34566777888888888888888888888888888888888888888888887 8888888888888888887 77889
Q ss_pred cHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCC
Q 010517 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS 167 (508)
Q Consensus 88 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~ 167 (508)
||||+|+..|+.+++++|++.|++++..|..|.||||+|+..|+.+++++|+++|++++ .++..|+|||| +|+..|+
T Consensus 247 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~g~ 323 (437)
T 1n11_A 247 TPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD--ATTRMGYTPLH-VASHYGN 323 (437)
T ss_dssp CHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCCTT--CCCSSCCCHHH-HHHHSSC
T ss_pred CHHHHHHHCCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCccCC--CCCCCCCCHHH-HHHHcCc
Confidence 99999999999999999999999999999999999999999999999999999999998 88999999999 9999999
Q ss_pred HHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcCCChhH
Q 010517 168 RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQ 247 (508)
Q Consensus 168 ~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~~ 247 (508)
.+++++|+++|++++.++..+.++++.+++.++...+..|+. ++++ ++.+|..|+||+++|... +....
T Consensus 324 ~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~--------~ga~--~~~~~~~g~t~l~~A~~~-g~~~~ 392 (437)
T 1n11_A 324 IKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLK--------NGAS--PNEVSSDGTTPLAIAKRL-GYISV 392 (437)
T ss_dssp SHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH--------TTCC--SCCCCSSSCCHHHHHHHT-TCHHH
T ss_pred HHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHH--------CcCC--CCCCCCCCCCHHHHHHHc-CcHHH
Confidence 999999999999999988889999999998888766655443 3777 778899999999998764 33444
Q ss_pred HHHHH
Q 010517 248 LQWLD 252 (508)
Q Consensus 248 l~~l~ 252 (508)
.+.|.
T Consensus 393 ~~~l~ 397 (437)
T 1n11_A 393 TDVLK 397 (437)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 29
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=100.00 E-value=2e-32 Score=268.16 Aligned_cols=224 Identities=20% Similarity=0.200 Sum_probs=197.1
Q ss_pred ccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHH
Q 010517 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92 (508)
Q Consensus 13 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~ 92 (508)
.+..|.|+||+|+..|+.++|++||++|+++|..|..|.||||+|+.. |+.+++++|+++|++++.. |..|+||||+
T Consensus 36 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~tpL~~ 112 (299)
T 1s70_B 36 VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACID-DNVDMVKFLVENGANINQP--DNEGWIPLHA 112 (299)
T ss_dssp CEECHHHHHHHHHHHTCHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred cccCCccHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCcHHHH
Confidence 456789999999999999999999999999999999999999999998 9999999999999999998 8899999999
Q ss_pred HHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHc-CCcccc------------------------
Q 010517 93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH-ICYFCG------------------------ 147 (508)
Q Consensus 93 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~-ga~~~~------------------------ 147 (508)
|+..|+.+++++|+++|++++..|..|.||||+|+..++.++++.|+.. +.+++.
T Consensus 113 A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 192 (299)
T 1s70_B 113 AASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHIND 192 (299)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcch
Confidence 9999999999999999999999999999999999999999999877653 343320
Q ss_pred cccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceec
Q 010517 148 WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIY 227 (508)
Q Consensus 148 ~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~ 227 (508)
...+..|.|||| +|+..|+.+++++|+++|++++..+..+.++++.++..++...+..|+. +++| ++.+
T Consensus 193 ~~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~--------~gad--~~~~ 261 (299)
T 1s70_B 193 VRHAKSGGTALH-VAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVE--------NLCD--MEAV 261 (299)
T ss_dssp CCCTTTCCCHHH-HHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH--------TTCC--TTCC
T ss_pred hhhcCCCCCHHH-HHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHH--------cCCC--CCCc
Confidence 134678999999 9999999999999999999999999999999999999998776665554 3677 7889
Q ss_pred cCCCcchhHhhhhcCCChhHHHHHH
Q 010517 228 DQATKIRYKFASANEGDKHQLQWLD 252 (508)
Q Consensus 228 d~~~~t~l~~a~~~~~~~~~l~~l~ 252 (508)
|..|+||+++|.+ .....+.++.
T Consensus 262 d~~g~t~l~~A~~--~~~~~l~~l~ 284 (299)
T 1s70_B 262 NKVGQTAFDVADE--DILGYLEELQ 284 (299)
T ss_dssp CTTSCCTTTSCCS--GGGHHHHHHH
T ss_pred CCCCCCHHHHHHH--HHHHHHHHHH
Confidence 9999999999954 3344444444
No 30
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.7e-31 Score=260.45 Aligned_cols=183 Identities=18% Similarity=0.195 Sum_probs=174.7
Q ss_pred cCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCC
Q 010517 8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87 (508)
Q Consensus 8 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~ 87 (508)
.+++.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.. ..|.
T Consensus 83 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~---~~g~ 158 (285)
T 3d9h_A 83 WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVS-GSWDCVNLLLQHGASVQPE---SDLA 158 (285)
T ss_dssp CCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCSSCS---CTTS
T ss_pred CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CHHHHHHHHHHCCCCCCCC---CCCC
Confidence 46778899999999999999999999999999999999999999999999998 9999999999999999864 4699
Q ss_pred cHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCC
Q 010517 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS 167 (508)
Q Consensus 88 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~ 167 (508)
||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|++++ .+..|.|||| +|+..++
T Consensus 159 t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~---~~~~g~t~L~-~A~~~~~ 234 (285)
T 3d9h_A 159 SPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN---QGKGQDSPLH-AVVRTAS 234 (285)
T ss_dssp CHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTT---CCBTTBCHHH-HHHHTTC
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCC---CCCCCCCHHH-HHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999998 3889999999 9999999
Q ss_pred HHHHHHhhhCCCCCCCCCccccccccccccc
Q 010517 168 RKIWVVVIPCGTANPSKPLRFELVIYPSLQD 198 (508)
Q Consensus 168 ~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~ 198 (508)
.+++++|+++|++++.++..+.++++.+...
T Consensus 235 ~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~ 265 (285)
T 3d9h_A 235 EELACLLMDFGADTQAKNAEGKRPVELVPPE 265 (285)
T ss_dssp HHHHHHHHHTTCCTTCCCTTSCCGGGGSCTT
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHhcCc
Confidence 9999999999999999999999999999843
No 31
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=100.00 E-value=2.6e-32 Score=249.89 Aligned_cols=163 Identities=25% Similarity=0.227 Sum_probs=158.1
Q ss_pred cccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcH
Q 010517 10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89 (508)
Q Consensus 10 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tp 89 (508)
.|.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+||
T Consensus 28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~ 104 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKN-NRLGIAEKLLSKGSNVNTK--DFSGKTP 104 (192)
T ss_dssp HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHTCCTTCC--CTTSCCH
T ss_pred HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhccccccccccCccHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCcH
Confidence 567899999999999999999999999999999999999999999999998 9999999999999999998 8899999
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHH
Q 010517 90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRK 169 (508)
Q Consensus 90 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~ 169 (508)
||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+
T Consensus 105 L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~ 181 (192)
T 2rfm_A 105 LMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADIS--ARDLTGLTAEA-SARIFGRQE 181 (192)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CBCTTSCBHHH-HHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHhCcHH
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999 999999999
Q ss_pred HHHHhhhCC
Q 010517 170 IWVVVIPCG 178 (508)
Q Consensus 170 i~~~Ll~~g 178 (508)
++++|++++
T Consensus 182 ~v~~Ll~~~ 190 (192)
T 2rfm_A 182 VIKIFTEVR 190 (192)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcc
Confidence 999999865
No 32
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=99.98 E-value=1.5e-31 Score=251.21 Aligned_cols=182 Identities=19% Similarity=0.126 Sum_probs=172.1
Q ss_pred cccCCchHHHHHHHHcCCHHHHHHHHHcC--CCCCc-cCCCCChHHHHHHHhCCCHHHHHHHHHcC--CCCcccCCCCCC
Q 010517 12 QQRQSKDELLYQWVIAGDVDAIRALRSQG--ASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELG--ANINAYRPGGRG 86 (508)
Q Consensus 12 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~-~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~g--a~~n~~~~d~~g 86 (508)
.+|..|.||||+|+..|+.+++++|+++| .+++. .|..|.||||+|+.. |+.+++++|+++| ++++.. |..|
T Consensus 31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~~~--~~~g 107 (228)
T 2dzn_A 31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSV-GNLEVVKSLYDRPLKPDLNKI--TNQG 107 (228)
T ss_dssp CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHH-CCHHHHHHHHSSSSCCCTTCC--CTTC
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHc-CCHHHHHHHHhCCCCcccccC--CcCC
Confidence 47899999999999999999999999999 56666 789999999999998 9999999999999 888877 8899
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcC-CcccccccccCCCCHHHHHHhhc
Q 010517 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLREFYGPSFLEALAPQL 165 (508)
Q Consensus 87 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~~g~tpL~~~A~~~ 165 (508)
.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.| ++++ .+|..|+|||| +|+..
T Consensus 108 ~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~d~~g~t~L~-~A~~~ 184 (228)
T 2dzn_A 108 VTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN--WQDKQGWTPLF-HALAE 184 (228)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSC--CCCTTSCCHHH-HHHHT
T ss_pred CCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccccc--CcCCCCCCHHH-HHHHc
Confidence 99999999999999999999999999999999999999999999999999999999 9998 89999999999 99999
Q ss_pred CCHHHHHHhh-hCCCCCCCCCcccccccccccccc
Q 010517 166 MSRKIWVVVI-PCGTANPSKPLRFELVIYPSLQDV 199 (508)
Q Consensus 166 ~~~~i~~~Ll-~~g~~~~~~~~~~~~~l~~a~~~~ 199 (508)
++.+++++|+ ++|++++..+..+.++++.+.+..
T Consensus 185 ~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~~ 219 (228)
T 2dzn_A 185 GHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNEQ 219 (228)
T ss_dssp TCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSSTT
T ss_pred CCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHHH
Confidence 9999999999 999999999999999999987653
No 33
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.98 E-value=2.5e-31 Score=251.05 Aligned_cols=228 Identities=17% Similarity=0.135 Sum_probs=204.7
Q ss_pred ccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHH
Q 010517 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL 90 (508)
Q Consensus 11 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpL 90 (508)
+..|..|.|+||+|+..|+.+++++|++.|++++.+|..|.||||+|+.. |+.+++++|+++|++++... +..|.|||
T Consensus 3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~-~~~~~t~L 80 (240)
T 3eu9_A 3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAIN-NRIDLVKYYISKGAIVDQLG-GDLNSTPL 80 (240)
T ss_dssp CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCB-TTTTBCHH
T ss_pred cccccccchHHHHHHHcCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHh-CCHHHHHHHHHcCCcchhhc-CCcCCChh
Confidence 34688999999999999999999999999999999999999999999998 99999999999999998763 56699999
Q ss_pred HHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCC-HH
Q 010517 91 HHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS-RK 169 (508)
Q Consensus 91 h~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~-~~ 169 (508)
|+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++ .++..|.|||| +|+..++ .+
T Consensus 81 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~--~~~~~g~t~l~-~a~~~~~~~~ 157 (240)
T 3eu9_A 81 HWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD--MMDQNGMTPLM-WAAYRTHSVD 157 (240)
T ss_dssp HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHCCSST
T ss_pred HHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCcc--ccCCCCCcHHH-HHHHhCChHH
Confidence 99999999999999999999999999999999999999999999999999999999 89999999999 7775555 89
Q ss_pred HHHHhhhCCCCCCCCCc-cccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcCCChhHH
Q 010517 170 IWVVVIPCGTANPSKPL-RFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQL 248 (508)
Q Consensus 170 i~~~Ll~~g~~~~~~~~-~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~~l 248 (508)
++++|++.|.+++..+. .+.++++.++..+....+..|+.. +.+ ++..|..|+||+++|... +....+
T Consensus 158 ~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~--------g~~--~~~~~~~g~t~l~~A~~~-~~~~~v 226 (240)
T 3eu9_A 158 PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA--------GAN--VDAQNIKGESALDLAKQR-KNVWMI 226 (240)
T ss_dssp THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHH--------TCC--TTCBCTTSCBHHHHHHHT-TCHHHH
T ss_pred HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHHHc--------CCC--CCCcCCCCCCHHHHHHHc-CcHHHH
Confidence 99999999999998876 788999999998887766655543 667 778899999999999764 567777
Q ss_pred HHHHHh
Q 010517 249 QWLDNA 254 (508)
Q Consensus 249 ~~l~~~ 254 (508)
+.|...
T Consensus 227 ~~L~~~ 232 (240)
T 3eu9_A 227 NHLQEA 232 (240)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 777643
No 34
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.98 E-value=2.4e-31 Score=238.44 Aligned_cols=159 Identities=25% Similarity=0.349 Sum_probs=152.5
Q ss_pred cCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHH
Q 010517 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA 93 (508)
Q Consensus 14 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A 93 (508)
...+.++|++|++.|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+|
T Consensus 11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A 87 (169)
T 2y1l_E 11 GSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFN-GHLEIVEVLLKNGADVNAV--DHAGMTPLRLA 87 (169)
T ss_dssp --CHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHH
T ss_pred CCcccchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHH
Confidence 45678999999999999999999999999999999999999999998 9999999999999999998 88999999999
Q ss_pred HHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHH
Q 010517 94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV 173 (508)
Q Consensus 94 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~ 173 (508)
+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++
T Consensus 88 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~ 164 (169)
T 2y1l_E 88 ALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN--AQDKFGKTAFD-ISIDNGNEDLAEI 164 (169)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHhCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 89999999999 9999999999999
Q ss_pred hhhCC
Q 010517 174 VIPCG 178 (508)
Q Consensus 174 Ll~~g 178 (508)
|++.|
T Consensus 165 L~~~G 169 (169)
T 2y1l_E 165 LQKLN 169 (169)
T ss_dssp HHTC-
T ss_pred HHHcC
Confidence 99876
No 35
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.98 E-value=1.6e-32 Score=267.82 Aligned_cols=220 Identities=13% Similarity=0.067 Sum_probs=191.0
Q ss_pred CcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCc
Q 010517 9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT 88 (508)
Q Consensus 9 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~t 88 (508)
.++.+|..|.||||+|+..|+.++|++|+++|++++.+| |.||||+|+.. |+.+++++|+++|++++.+ |..|+|
T Consensus 23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~--g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--d~~g~t 97 (285)
T 3kea_A 23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLLE--NEFPLHQAATL-EDTKIVKILLFSGLDDSQF--DDKGNT 97 (285)
T ss_dssp TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSCCT--TCCHHHHHTTS-SSCHHHHHHHHTTCCTTCC--CTTSCC
T ss_pred CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCC--CCCHHHHHHHc-CCHHHHHHHHHCCCCCCCc--CCCCCc
Confidence 578899999999999999999999999999999998884 99999999997 9999999999999999998 889999
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCccccCCCC-CcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCC
Q 010517 89 PLHHAAKRGLEPTVRLLLSCGANALVRNDDC-HTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS 167 (508)
Q Consensus 89 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g-~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~ 167 (508)
|||+|+..|+.+++++|+++|++++..|..| .||||+|+..|+.+++++|+++|++.. . ...|.|||| +|+..|+
T Consensus 98 ~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~-~~~g~t~L~-~A~~~g~ 173 (285)
T 3kea_A 98 ALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--D-LAILLSCIH-ITIKNGH 173 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTC--C-CSTHHHHHH-HHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccc--c-ccCCccHHH-HHHHcCh
Confidence 9999999999999999999999999999999 899999999999999999999998875 1 128999999 9999999
Q ss_pred HHHHHHhhhCCCCCCCCCcccccc-ccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcCCChh
Q 010517 168 RKIWVVVIPCGTANPSKPLRFELV-IYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKH 246 (508)
Q Consensus 168 ~~i~~~Ll~~g~~~~~~~~~~~~~-l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~ 246 (508)
.+++++|+++|++++..+..+.++ ++.++..++...+.. +..+++| ++..|. . +...++..
T Consensus 174 ~~~v~~Ll~~gad~n~~~~~g~t~~L~~A~~~~~~~~v~~--------Ll~~gad--~~~~~~-------~-a~~~~~~~ 235 (285)
T 3kea_A 174 VDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQA--------LFKYDIN--IYSANL-------E-NVLLDDAE 235 (285)
T ss_dssp HHHHHHHHHHHHHTCTTCCCBCCTTHHHHHHHTCHHHHHH--------HTTSCBC--STTTTG-------G-GGTTTCHH
T ss_pred HHHHHHHHHcCCCCCcccCCCCChHHHHHHHcCCHHHHHH--------HHHcCCC--CCCCCh-------h-hhhcCCHH
Confidence 999999999999999999888887 899988887544433 3344777 544442 1 12345666
Q ss_pred HHHHHHHhh
Q 010517 247 QLQWLDNAC 255 (508)
Q Consensus 247 ~l~~l~~~~ 255 (508)
.++.|...-
T Consensus 236 iv~~Ll~~g 244 (285)
T 3kea_A 236 IAKMIIEKH 244 (285)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHcC
Confidence 677776443
No 36
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.97 E-value=2e-31 Score=236.74 Aligned_cols=159 Identities=22% Similarity=0.290 Sum_probs=150.5
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHH
Q 010517 15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA 94 (508)
Q Consensus 15 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~ 94 (508)
+...|+||+|+..|+.++|++|+++|++++.+|..|.||||+|+. |+.+++++|+++|++++.+ |..|+||||+|+
T Consensus 3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~--~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~ 78 (162)
T 1ihb_A 3 EPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKL--GNPEIARRLLLRGANPDLK--DRTGFAVIHDAA 78 (162)
T ss_dssp --CHHHHHHHHHHTCHHHHHHHTTSCCCTTCCCTTSCCHHHHCCS--SCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHH
T ss_pred chHhhHHHHHHHcCCHHHHHHHHhCCCCccccCccCccHHHHHHc--CcHHHHHHHHHcCCCCCCC--CCCCCCHHHHHH
Confidence 456899999999999999999999999999999999999999885 8999999999999999998 889999999999
Q ss_pred HcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCc-ccccccccCCCCHHHHHHhhcCCHHHHHH
Q 010517 95 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY-FCGWLREFYGPSFLEALAPQLMSRKIWVV 173 (508)
Q Consensus 95 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~-~~~~~~~~~g~tpL~~~A~~~~~~~i~~~ 173 (508)
..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++ ++ .+|..|.|||| +|+..++.+++++
T Consensus 79 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~ 155 (162)
T 1ihb_A 79 RAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVG--HRNHKGDTACD-LARLYGRNEVVSL 155 (162)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTT--CCCTTSCCHHH-HHHHTTCHHHHHH
T ss_pred HcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCC--CcCCCCCcHHH-HHHHcCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999998 47 89999999999 9999999999999
Q ss_pred hhhCCCC
Q 010517 174 VIPCGTA 180 (508)
Q Consensus 174 Ll~~g~~ 180 (508)
|+++|++
T Consensus 156 Ll~~GAd 162 (162)
T 1ihb_A 156 MQANGAG 162 (162)
T ss_dssp HHHTC--
T ss_pred HHHhCCC
Confidence 9999985
No 37
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=99.97 E-value=4.5e-31 Score=263.86 Aligned_cols=229 Identities=19% Similarity=0.157 Sum_probs=203.7
Q ss_pred CcccccCCchHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCC
Q 010517 9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87 (508)
Q Consensus 9 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~ 87 (508)
+.+..+..|.++||.|+..|+.+.|+.|+.. +.+++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+
T Consensus 16 ~~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~ 92 (351)
T 3utm_A 16 KAVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGY-NRVRIVQLLLQHGADVHAK--DKGGL 92 (351)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCC
T ss_pred eeeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCC
Confidence 3455677899999999999999999988875 889999999999999999998 9999999999999999998 88999
Q ss_pred cHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCccccccc-----------------
Q 010517 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLR----------------- 150 (508)
Q Consensus 88 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~----------------- 150 (508)
||||+|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|++++ ..
T Consensus 93 t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~~~l~~a~~~~~~ 170 (351)
T 3utm_A 93 VPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPT--LVNCHGKSAVDMAPTPELR 170 (351)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHHHCSSHHHH
T ss_pred cHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--cccCCCCcchHHHhhhhhH
Confidence 99999999999999999999999999999999999999999999999999999999876 33
Q ss_pred -------------------------------------ccCCCCHHHHHHhhc---CCHHHHHHhhhCCCCCCCCCccccc
Q 010517 151 -------------------------------------EFYGPSFLEALAPQL---MSRKIWVVVIPCGTANPSKPLRFEL 190 (508)
Q Consensus 151 -------------------------------------~~~g~tpL~~~A~~~---~~~~i~~~Ll~~g~~~~~~~~~~~~ 190 (508)
+..|.|||| +|+.. +..+++++|+++|++++..+..+.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~-~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t 249 (351)
T 3utm_A 171 ERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALH-CAVASLHPKRKQVAELLLRKGANVNEKNKDFMT 249 (351)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHH-HHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCC
T ss_pred HHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHH-HHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCC
Confidence 356789999 88888 5589999999999999999999999
Q ss_pred cccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcCCChhHHHHHHHh
Q 010517 191 VIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLDNA 254 (508)
Q Consensus 191 ~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~~l~~l~~~ 254 (508)
+++.++..++...+..|+.. +.+ ++.+|..|+||||+|... +....++.|+..
T Consensus 250 ~L~~A~~~g~~~~v~~Ll~~--------ga~--~n~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~ 302 (351)
T 3utm_A 250 PLHVAAERAHNDVMEVLHKH--------GAK--MNALDSLGQTALHRAALA-GHLQTCRLLLSY 302 (351)
T ss_dssp HHHHHHHTTCHHHHHHHHHT--------TCC--TTCCCTTSCCHHHHHHHH-TCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHC--------CCC--CCCcCCCCCCHHHHHHHc-CcHHHHHHHHHc
Confidence 99999999987666655443 677 888999999999999864 566677777643
No 38
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.97 E-value=1.6e-31 Score=238.79 Aligned_cols=160 Identities=23% Similarity=0.231 Sum_probs=155.0
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHH
Q 010517 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95 (508)
Q Consensus 16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~ 95 (508)
.|.||||+|+..|+.++|++|++.|.+++.+|..|.||||+|+.. |+.+++++|+++|++++.. |..|.||||+|+.
T Consensus 2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~ 78 (167)
T 3v31_A 2 ANSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAH-GQIAVVEFLLQNGADPQLL--GKGRESALSLACS 78 (167)
T ss_dssp TTCCCHHHHHHTTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHH
T ss_pred CCcchHHHHHHCCCHHHHHHHHHcCCCcCCCCCCCCCHHHHHHHC-CCHHHHHHHHHcCCCCCCc--CCCCCcHHHHHHH
Confidence 578999999999999999999999999999999999999999998 9999999999999999998 8899999999999
Q ss_pred cCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhh
Q 010517 96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI 175 (508)
Q Consensus 96 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll 175 (508)
.|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~L~ 155 (167)
T 3v31_A 79 KGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPT--IETDSGYNSMD-LAVALGYRSVQQVIE 155 (167)
T ss_dssp HTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 89999999999 999999999999999
Q ss_pred hCCCCC
Q 010517 176 PCGTAN 181 (508)
Q Consensus 176 ~~g~~~ 181 (508)
+++.+.
T Consensus 156 ~~~~~~ 161 (167)
T 3v31_A 156 SHLLKL 161 (167)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988654
No 39
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=99.97 E-value=1.7e-31 Score=269.41 Aligned_cols=226 Identities=17% Similarity=0.148 Sum_probs=198.4
Q ss_pred ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHc----CCCCcc---
Q 010517 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL----GANINA--- 79 (508)
Q Consensus 7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~----ga~~n~--- 79 (508)
+.+++.+|..|.||||+|+..|+.++|++|+++|++++. .+|.||||+|+.. |+.+++++|+++ |++++.
T Consensus 43 g~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~~~ 119 (364)
T 3ljn_A 43 GVSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL--WHGQKPIHLAVMA-NKTDLVVALVEGAKERGQMPESLLN 119 (364)
T ss_dssp TCCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC--BTTBCHHHHHHHT-TCHHHHHHHHHHHHHHTCCHHHHHT
T ss_pred CCCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCHHHHHHHc-CCHHHHHHHHHhccccCCCHHHHHh
Confidence 356778899999999999999999999999999997644 5799999999998 999999999999 888876
Q ss_pred --------------cCCCCCCCcHHHHHHHcC--CHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCC
Q 010517 80 --------------YRPGGRGGTPLHHAAKRG--LEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 143 (508)
Q Consensus 80 --------------~~~d~~g~tpLh~A~~~g--~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga 143 (508)
. |..|.||||+|+..| +.++|++|+++|++++..|..|.||||+|+..|+.+++++|+++|+
T Consensus 120 ~~~~~~~~~~~~~~~--~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~ 197 (364)
T 3ljn_A 120 ECDEREVNEIGSHVK--HCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVP 197 (364)
T ss_dssp CCCCCCEEEETTEEE--EESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCS
T ss_pred hcchHhhhhhccccC--CCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence 6 778999999999999 9999999999999999999999999999999999999999999999
Q ss_pred c-----ccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhh----cC
Q 010517 144 Y-----FCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKI----DE 214 (508)
Q Consensus 144 ~-----~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~----~~ 214 (508)
+ ++ .+|..|.|||| +|+..|+.+++++|+++|++++..+..+.++++.++..++...+..|+...- ..
T Consensus 198 ~~~~~~~~--~~~~~g~t~L~-~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~~~~~~~~~ 274 (364)
T 3ljn_A 198 SKSSLRLD--YANKQGNSHLH-WAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQA 274 (364)
T ss_dssp CSSSCCTT--CCCTTCCCTTH-HHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHHSCHHHHHT
T ss_pred cccccccc--ccCCCCCcHHH-HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHcCCchhhhc
Confidence 9 88 89999999999 9999999999999999999999999999999999999999888877765421 11
Q ss_pred CCCCCCCCcceeccCCCcchhHhhhhcC
Q 010517 215 PKFHQPDPSLTIYDQATKIRYKFASANE 242 (508)
Q Consensus 215 ~~~~~~d~~i~~~d~~~~t~l~~a~~~~ 242 (508)
...+... ....+..+.++++.++...
T Consensus 275 ~~~~~~~--~~~~~~~~~~~l~~aa~~~ 300 (364)
T 3ljn_A 275 CPYHNGT--TVLPDRVVWLDFVPAAADP 300 (364)
T ss_dssp CTTBSSS--SBCGGGCCCCTTSCSSCCH
T ss_pred CcccCcc--cccccccccccchhhhhcc
Confidence 1122222 3345777888888877543
No 40
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=7.4e-31 Score=241.60 Aligned_cols=188 Identities=21% Similarity=0.195 Sum_probs=173.3
Q ss_pred cCCchHHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHH
Q 010517 14 RQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92 (508)
Q Consensus 14 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~ 92 (508)
+..+.|+||+|+..|+.+.|+.||+.+. +++.+|.+|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~l~~ 78 (201)
T 3hra_A 2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN-NDIEIAKALIDRGADINLQ--NSISDSPYLY 78 (201)
T ss_dssp -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHH
T ss_pred CcccccHHHHHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHH
Confidence 3568899999999999999999999876 9999999999999999998 9999999999999999998 8899999999
Q ss_pred HHHcCCHHHHHHHH-HCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcC-CcccccccccCCCCHHHHHHhhcCC---
Q 010517 93 AAKRGLEPTVRLLL-SCGANALVRNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLREFYGPSFLEALAPQLMS--- 167 (508)
Q Consensus 93 A~~~g~~~~v~~Ll-~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~~g~tpL~~~A~~~~~--- 167 (508)
|+..|+.+++++|+ ..+++++..|..|.||||+|+..|+.+++++|+++| ++++ .+|..|.|||| +|+..+.
T Consensus 79 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~--~~~~~g~t~L~-~A~~~~~~~~ 155 (201)
T 3hra_A 79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDID--FQNDFGYTALI-EAVGLREGNQ 155 (201)
T ss_dssp HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTT--CCCTTSCCHHH-HHHHSSCCSH
T ss_pred HHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcC--CCCCCCCCHHH-HHHHhccchh
Confidence 99999999999999 667899999999999999999999999999999999 8888 89999999999 8988887
Q ss_pred --HHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHH
Q 010517 168 --RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIAL 207 (508)
Q Consensus 168 --~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l 207 (508)
.+++++|+++|++++..+..+.++++.+++.++.+.+..|
T Consensus 156 ~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L 197 (201)
T 3hra_A 156 LYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKIL 197 (201)
T ss_dssp HHHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHH
T ss_pred hHHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHH
Confidence 9999999999999999998999999999988886665543
No 41
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.97 E-value=2.3e-31 Score=239.09 Aligned_cols=164 Identities=23% Similarity=0.206 Sum_probs=154.7
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCC-CCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHH
Q 010517 17 KDELLYQWVIAGDVDAIRALRSQGAS-LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95 (508)
Q Consensus 17 g~t~L~~Aa~~g~~~~v~~Ll~~g~~-~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~ 95 (508)
+.||||+|+..|+.++|+.|++.+.+ ++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+|+.
T Consensus 2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~ 78 (172)
T 3v30_A 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAF-GEIETVRFLLEWGADPHIL--AKERESALSLAST 78 (172)
T ss_dssp --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHT-TCHHHHHHHHHHTCCTTCC--CTTCCCHHHHHHH
T ss_pred chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCchhh--cccCCCHHHHHHH
Confidence 46899999999999999999999987 899999999999999998 9999999999999999998 8899999999999
Q ss_pred cCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhh
Q 010517 96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVI 175 (508)
Q Consensus 96 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll 175 (508)
.|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+
T Consensus 79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~~~~~L~ 155 (172)
T 3v30_A 79 GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLT--TEADSGYTPMD-LAVALGYRKVQQVIE 155 (172)
T ss_dssp TTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTCHHHHHHHH
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHhCcHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 89999999999 999999999999999
Q ss_pred hCCCCCCCCCc
Q 010517 176 PCGTANPSKPL 186 (508)
Q Consensus 176 ~~g~~~~~~~~ 186 (508)
+++++....+.
T Consensus 156 ~~~~~~~~~~~ 166 (172)
T 3v30_A 156 NHILKLFQSNL 166 (172)
T ss_dssp HHHHHHSCC--
T ss_pred HHHHHHhcccC
Confidence 99987765553
No 42
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Probab=99.97 E-value=2.1e-31 Score=252.02 Aligned_cols=168 Identities=24% Similarity=0.180 Sum_probs=160.1
Q ss_pred CcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCC------CcccCC
Q 010517 9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGAN------INAYRP 82 (508)
Q Consensus 9 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~------~n~~~~ 82 (508)
.++.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++ ++..
T Consensus 37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~-- 113 (236)
T 1ikn_D 37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ-GCLASVGVLTQSCTTPHLHSILKAT-- 113 (236)
T ss_dssp CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHH-TCHHHHHHHHHSTTTTSSSCGGGCC--
T ss_pred HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHhcccchhHHHHhhcc--
Confidence 5678899999999999999999999999999999999999999999999998 999999999999986 3444
Q ss_pred CCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCC-CCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHH
Q 010517 83 GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRND-DCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEAL 161 (508)
Q Consensus 83 d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~-~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~ 161 (508)
+..|+||||+|+..|+.+++++|+++|++++.++. .|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +
T Consensus 114 ~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~ 190 (236)
T 1ikn_D 114 NYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVN--RVTYQGYSPYQ-L 190 (236)
T ss_dssp CTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSC--CCCTTCCCGGG-G
T ss_pred CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC--cccCCCCCHHH-H
Confidence 78899999999999999999999999999999998 99999999999999999999999999999 99999999999 9
Q ss_pred HhhcCCHHHHHHhhhCCCCCC
Q 010517 162 APQLMSRKIWVVVIPCGTANP 182 (508)
Q Consensus 162 A~~~~~~~i~~~Ll~~g~~~~ 182 (508)
|+..++.+++++|+++|++..
T Consensus 191 A~~~~~~~~~~~Ll~~ga~~~ 211 (236)
T 1ikn_D 191 TWGRPSTRIQQQLGQLTLENL 211 (236)
T ss_dssp CTTSSCHHHHHHHHTTSCGGG
T ss_pred HHccCchHHHHHHHHcchhhh
Confidence 999999999999999999764
No 43
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=99.97 E-value=8.4e-31 Score=241.22 Aligned_cols=164 Identities=20% Similarity=0.218 Sum_probs=157.4
Q ss_pred CcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHH-HcCCCCcccCCCCCCC
Q 010517 9 NQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLI-ELGANINAYRPGGRGG 87 (508)
Q Consensus 9 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll-~~ga~~n~~~~d~~g~ 87 (508)
+++.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+ ..+++++.. |..|.
T Consensus 31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~-~~~~~~~~Ll~~~~~~~~~~--~~~g~ 107 (201)
T 3hra_A 31 QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQ-GRTEILAYMLKHATPDLNKH--NRYGG 107 (201)
T ss_dssp CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHSCCCTTCC--CTTSC
T ss_pred CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHhccCcccccc--cCCCC
Confidence 6778899999999999999999999999999999999999999999999998 9999999999 667799988 88999
Q ss_pred cHHHHHHHcCCHHHHHHHHHCC-CCccccCCCCCcHHHHHHHhCC-----HHHHHHHHHcCCcccccccccCCCCHHHHH
Q 010517 88 TPLHHAAKRGLEPTVRLLLSCG-ANALVRNDDCHTALGVARIKGH-----INVVRAIESHICYFCGWLREFYGPSFLEAL 161 (508)
Q Consensus 88 tpLh~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~TpLh~A~~~g~-----~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~ 161 (508)
||||+|+..|+.+++++|+++| ++++.+|..|.||||+|+..++ .+++++|+++|++++ .+|..|.|||| +
T Consensus 108 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~ 184 (201)
T 3hra_A 108 NALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQS--IKDNSGRTAMD-Y 184 (201)
T ss_dssp CSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTT--CCCTTSCCHHH-H
T ss_pred cHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCC--ccCCCCCCHHH-H
Confidence 9999999999999999999999 9999999999999999999998 999999999999999 99999999999 9
Q ss_pred HhhcCCHHHHHHhhhCC
Q 010517 162 APQLMSRKIWVVVIPCG 178 (508)
Q Consensus 162 A~~~~~~~i~~~Ll~~g 178 (508)
|+..++.+++++|+++|
T Consensus 185 A~~~~~~~~~~~Ll~~G 201 (201)
T 3hra_A 185 ANQKGYTEISKILAQYN 201 (201)
T ss_dssp HHHHTCHHHHHHHHTCC
T ss_pred HHHcCCHhHHHHHHhcC
Confidence 99999999999999886
No 44
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=99.97 E-value=3.8e-31 Score=249.39 Aligned_cols=175 Identities=20% Similarity=0.156 Sum_probs=159.3
Q ss_pred ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCC-----CccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccC
Q 010517 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASL-----EWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYR 81 (508)
Q Consensus 7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~-----~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~ 81 (508)
..+++.+|..|.||||+|+..|+.++|++|+++|+++ +.+|..|.||||+|+.. |+.+++++|+++|++++.++
T Consensus 27 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~~ 105 (232)
T 2rfa_A 27 GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVIN-QNVNLVRALLARGASVSARA 105 (232)
T ss_dssp CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHT-TCHHHHHHHHHTTCCTTCCC
T ss_pred CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHc-CCHHHHHHHHhCCCCCCccc
Confidence 4567888999999999999999999999999999987 67788999999999998 99999999999999999873
Q ss_pred C-----------CCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHH----HHHHHcCCccc
Q 010517 82 P-----------GGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVV----RAIESHICYFC 146 (508)
Q Consensus 82 ~-----------d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v----~~Ll~~ga~~~ 146 (508)
. |..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++ ++|++.|++..
T Consensus 106 ~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~ 185 (232)
T 2rfa_A 106 TGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDH 185 (232)
T ss_dssp CSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCS
T ss_pred CCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchh
Confidence 2 23799999999999999999999999999999999999999999999999988 99999999872
Q ss_pred c----cccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCC
Q 010517 147 G----WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPS 183 (508)
Q Consensus 147 ~----~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~ 183 (508)
. +.+|..|+|||| +|+..|+.+++++|+++|.....
T Consensus 186 ~~~~~~~~~~~g~tpl~-~A~~~g~~~~v~~Ll~~g~~~~~ 225 (232)
T 2rfa_A 186 LKSLELVPNNQGLTPFK-LAGVEGNIVMFQHLMQKRKHIAA 225 (232)
T ss_dssp SCCGGGCCCTTSCCHHH-HHHHHTCHHHHHHHHHHHHHC--
T ss_pred hhhhhccCCCCCCCHHH-HHHHcCCHHHHHHHHhcCccchh
Confidence 0 178999999999 99999999999999999976644
No 45
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Probab=99.97 E-value=3.2e-31 Score=268.67 Aligned_cols=196 Identities=15% Similarity=0.079 Sum_probs=183.2
Q ss_pred ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcC---CCCcccCCC
Q 010517 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELG---ANINAYRPG 83 (508)
Q Consensus 7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~g---a~~n~~~~d 83 (508)
+.++|.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|++++ ++++.. |
T Consensus 156 ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~~--d 232 (373)
T 2fo1_E 156 GADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAAN-RDFGMMVYMLNSTKLKGDIEEL--D 232 (373)
T ss_dssp CCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHT-TCHHHHHHHTTSHHHHHTTSCC--C
T ss_pred CCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHHHHC-CCHHHHHHHHhcCccccChhhc--C
Confidence 456788899999999999999999999999999999999999999999999998 9999999999998 899988 8
Q ss_pred CCCCcHHHHHHHcC---CHHHHHHHHHCCCCccc--------cCCCCCcHHHHHHHhCCHHHHHHHHHcC-Ccccccccc
Q 010517 84 GRGGTPLHHAAKRG---LEPTVRLLLSCGANALV--------RNDDCHTALGVARIKGHINVVRAIESHI-CYFCGWLRE 151 (508)
Q Consensus 84 ~~g~tpLh~A~~~g---~~~~v~~Ll~~ga~~~~--------~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-a~~~~~~~~ 151 (508)
..|+||||+|+..+ +.+++++|+++|++++. .|..|.||||+|+..|+.+++++|++++ ++++ .+|
T Consensus 233 ~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n--~~d 310 (373)
T 2fo1_E 233 RNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKD--KQD 310 (373)
T ss_dssp TTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTT--CCC
T ss_pred CCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCcc--CcC
Confidence 89999999999998 89999999999999886 6779999999999999999999999886 9999 999
Q ss_pred cCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHH
Q 010517 152 FYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW 208 (508)
Q Consensus 152 ~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~ 208 (508)
.+|.|||| +|+..|+.+++++|+++|++++..+..+.++++.++..++...+..|+
T Consensus 311 ~~g~TpL~-~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll 366 (373)
T 2fo1_E 311 EDGKTPIM-LAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 366 (373)
T ss_dssp TTCCCHHH-HHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred CCCCCHHH-HHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence 99999999 999999999999999999999999999999999999988866655443
No 46
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=99.97 E-value=3.2e-30 Score=241.40 Aligned_cols=169 Identities=22% Similarity=0.209 Sum_probs=162.2
Q ss_pred ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCC
Q 010517 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR 85 (508)
Q Consensus 7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~ 85 (508)
..+.+.+|..|.||||+|+..|+.+++++|++++. +++.++..|.||||+|+.. |+.+++++|+++|++++.+ |..
T Consensus 48 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~ 124 (223)
T 2f8y_A 48 SADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARL-AVEGMLEDLINSHADVNAV--DDL 124 (223)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCTTCB--CTT
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHHHHHHh-CcHHHHHHHHHcCCCCcCc--CCC
Confidence 34567789999999999999999999999999987 8999999999999999998 9999999999999999998 889
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhc
Q 010517 86 GGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL 165 (508)
Q Consensus 86 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~ 165 (508)
|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||+ +|+..
T Consensus 125 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~ 201 (223)
T 2f8y_A 125 GKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRD--ITDHMDRLPRD-IAQER 201 (223)
T ss_dssp SCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCc--cccccCCCHHH-HHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999 89999999999 99999
Q ss_pred CCHHHHHHhhhCCCCC
Q 010517 166 MSRKIWVVVIPCGTAN 181 (508)
Q Consensus 166 ~~~~i~~~Ll~~g~~~ 181 (508)
++.+++++|+++|+..
T Consensus 202 ~~~~i~~~L~~~g~~~ 217 (223)
T 2f8y_A 202 MHHDIVRLLDEYNLVR 217 (223)
T ss_dssp TCHHHHHHHHHTTCSS
T ss_pred cchHHHHHHHHcCCCc
Confidence 9999999999999865
No 47
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.97 E-value=3e-30 Score=227.22 Aligned_cols=151 Identities=24% Similarity=0.258 Sum_probs=146.1
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHc
Q 010517 17 KDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR 96 (508)
Q Consensus 17 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~ 96 (508)
..++||+|+..|+.++|++|+++|++++ .|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+|+..
T Consensus 2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~-~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~ 77 (153)
T 1awc_B 2 LGKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQY-GHFSTTEVLLRAGVSRDAR--TKVDRTPLHMAASE 77 (153)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTCCCC-CCTTCCCHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CTTCCCHHHHHHHH
T ss_pred ccHHHHHHHHcCCHHHHHHHHHcCCCCC-cCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHHHc
Confidence 5799999999999999999999999886 588999999999998 9999999999999999998 88999999999999
Q ss_pred CCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHh
Q 010517 97 GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV 174 (508)
Q Consensus 97 g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~L 174 (508)
|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..|+.+++++|
T Consensus 78 ~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~i~~~L 152 (153)
T 1awc_B 78 GHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVH--TQSKFCKTAFD-ISIDNGNEDLAEIL 152 (153)
T ss_dssp TCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHH
T ss_pred ChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--ccCCCCCCHHH-HHHHcCCHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999 89999999999 99999999999987
No 48
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.97 E-value=1.1e-30 Score=232.87 Aligned_cols=160 Identities=24% Similarity=0.241 Sum_probs=149.5
Q ss_pred ccCCchHHHHHHHHcCCHHHHHHHHH-cCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHH
Q 010517 13 QRQSKDELLYQWVIAGDVDAIRALRS-QGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH 91 (508)
Q Consensus 13 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~-~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh 91 (508)
.|..|.|+||+|++.|+.++|+.|++ .+.+++..+..|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||
T Consensus 4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~ 80 (165)
T 3twr_A 4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGY-NRVSVVEYLLQHGADVHAK--DKGGLVPLH 80 (165)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHH
T ss_pred CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHc-ChHHHHHHHHhcCCCCCcc--CCCCCCHHH
Confidence 47789999999999999999999999 5567888899999999999998 9999999999999999998 889999999
Q ss_pred HHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHH
Q 010517 92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW 171 (508)
Q Consensus 92 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~ 171 (508)
+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|.+|.|||| +|.. ++.+++
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~a~~-~~~~i~ 156 (165)
T 3twr_A 81 NACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPT--KKNRDGNTPLD-LVKD-GDTDIQ 156 (165)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCTGG-GSCT-TCHHHH
T ss_pred HHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCc--ccCCCCCChhH-hHhc-CChHHH
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999 7766 899999
Q ss_pred HHhhhCCC
Q 010517 172 VVVIPCGT 179 (508)
Q Consensus 172 ~~Ll~~g~ 179 (508)
++|+++|+
T Consensus 157 ~~L~~~gA 164 (165)
T 3twr_A 157 DLLRGDAA 164 (165)
T ss_dssp HHHHTC--
T ss_pred HHHhhccc
Confidence 99999885
No 49
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.97 E-value=1.2e-30 Score=236.00 Aligned_cols=166 Identities=23% Similarity=0.251 Sum_probs=156.3
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHH
Q 010517 15 QSKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA 93 (508)
Q Consensus 15 ~~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A 93 (508)
..+.++||.|+..|+.++|++|++. +.+++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+|
T Consensus 3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A 79 (179)
T 3f6q_A 3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACRE-GRSAVVEMLIMRGARINVM--NRGDDTPLHLA 79 (179)
T ss_dssp ----CCHHHHHHHTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhcCcccccccCCCCCCHHHHHHHc-CcHHHHHHHHHcCCCCCCc--CCCCCCHHHHH
Confidence 4578999999999999999999998 678999999999999999998 9999999999999999998 88999999999
Q ss_pred HHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHH
Q 010517 94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV 173 (508)
Q Consensus 94 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~ 173 (508)
+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||+ +|+..++.+++++
T Consensus 80 ~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~A~~~~~~~~~~~ 156 (179)
T 3f6q_A 80 ASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVS--ICNKYGEMPVD-KAKAPLRELLRER 156 (179)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSS--BCCTTSCCGGG-GSCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcc--hhccCCCCcHH-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999 99999999999 9999999999999
Q ss_pred hhhCCCCCCCCCc
Q 010517 174 VIPCGTANPSKPL 186 (508)
Q Consensus 174 Ll~~g~~~~~~~~ 186 (508)
|+++|++.+..+.
T Consensus 157 L~~~g~~~~~~~~ 169 (179)
T 3f6q_A 157 AEKMGQNLNRIPY 169 (179)
T ss_dssp HHHTTCCCSCBCC
T ss_pred HHHhhcCcccCCc
Confidence 9999999977653
No 50
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=3.4e-31 Score=253.73 Aligned_cols=191 Identities=16% Similarity=0.136 Sum_probs=142.8
Q ss_pred chHHHHHHHHcCCHH----HHHHHHHcCCCCCc----cCCCCChHHHHHHHh--CCCHHHHHHHHHcCCCCccc------
Q 010517 17 KDELLYQWVIAGDVD----AIRALRSQGASLEW----MDKEGKTPLIVACMD--SGLINVAKTLIELGANINAY------ 80 (508)
Q Consensus 17 g~t~L~~Aa~~g~~~----~v~~Ll~~g~~~~~----~d~~G~TpLh~Aa~~--~g~~~~v~~Ll~~ga~~n~~------ 80 (508)
|+||||+|+..|+.+ ++++|+++|++++. +|..|.||||+|+.. .|+.+++++|+++|++++..
T Consensus 2 G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~ 81 (256)
T 2etb_A 2 DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNA 81 (256)
T ss_dssp CHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGC
T ss_pred CccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhccc
Confidence 678888888888876 55666667888877 777888888888762 16778888888877766532
Q ss_pred ---CCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCC-------------CCcHHHHHHHhCCHHHHHHHHH---c
Q 010517 81 ---RPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD-------------CHTALGVARIKGHINVVRAIES---H 141 (508)
Q Consensus 81 ---~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~-------------g~TpLh~A~~~g~~~~v~~Ll~---~ 141 (508)
+.|..|+||||+|+..|+.+++++|+++|++++..|.. |.||||+|+..|+.+++++|++ .
T Consensus 82 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ 161 (256)
T 2etb_A 82 QCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQ 161 (256)
T ss_dssp CCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSC
T ss_pred ccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccc
Confidence 12456788888888888888888888888888777765 7888888888888888888888 7
Q ss_pred CCcccccccccCCCCHHHHHHhh--cCCHH-------HHHHhhhCCCCC-------CCCCccccccccccccccChHHHH
Q 010517 142 ICYFCGWLREFYGPSFLEALAPQ--LMSRK-------IWVVVIPCGTAN-------PSKPLRFELVIYPSLQDVQPRAVI 205 (508)
Q Consensus 142 ga~~~~~~~~~~g~tpL~~~A~~--~~~~~-------i~~~Ll~~g~~~-------~~~~~~~~~~l~~a~~~~~~~~v~ 205 (508)
|++++ .+|.+|+|||| +|+. .++.+ ++++|+++|+++ +.++..+.++++.++..++...+.
T Consensus 162 ga~~n--~~d~~g~TpLh-~A~~~~~~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~ 238 (256)
T 2etb_A 162 PASLE--ATDSLGNTVLH-ALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFR 238 (256)
T ss_dssp CCCTT--CCCTTSCCHHH-HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred CCCcC--ccCCCCCCHHH-HHHHcccCCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHH
Confidence 78877 77788888888 7776 66776 888888888777 667777778888877777766665
Q ss_pred HHHHh
Q 010517 206 ALWKA 210 (508)
Q Consensus 206 ~l~~~ 210 (508)
.|+..
T Consensus 239 ~Ll~~ 243 (256)
T 2etb_A 239 HILQR 243 (256)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 55443
No 51
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Probab=99.97 E-value=1.8e-30 Score=254.31 Aligned_cols=186 Identities=22% Similarity=0.224 Sum_probs=172.1
Q ss_pred ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86 (508)
Q Consensus 7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g 86 (508)
+.+++.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.. |..|
T Consensus 63 g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g 139 (299)
T 1s70_B 63 GADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASC-GYLDIAEYLISQGAHVGAV--NSEG 139 (299)
T ss_dssp CCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTS
T ss_pred CCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-CCHHHHHHHHhCCCCCCCc--CCCC
Confidence 346777899999999999999999999999999999999999999999999998 9999999999999999998 8899
Q ss_pred CcHHHHHHHcCCHHHHHHHHHC-CCCcc--------------------------ccCCCCCcHHHHHHHhCCHHHHHHHH
Q 010517 87 GTPLHHAAKRGLEPTVRLLLSC-GANAL--------------------------VRNDDCHTALGVARIKGHINVVRAIE 139 (508)
Q Consensus 87 ~tpLh~A~~~g~~~~v~~Ll~~-ga~~~--------------------------~~d~~g~TpLh~A~~~g~~~~v~~Ll 139 (508)
.||||+|+..++.++++.|+.. +.+++ ..+..|.||||+|+..|+.+++++|+
T Consensus 140 ~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll 219 (299)
T 1s70_B 140 DTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLI 219 (299)
T ss_dssp CCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHH
Confidence 9999999999999999877753 44443 35678999999999999999999999
Q ss_pred HcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccc
Q 010517 140 SHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQD 198 (508)
Q Consensus 140 ~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~ 198 (508)
++|++++ .+|..|.|||| +|+..|+.+++++|+++|++++..+..+.++++.+.+.
T Consensus 220 ~~g~d~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~ 275 (299)
T 1s70_B 220 QARYDVN--IKDYDGWTPLH-AAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADED 275 (299)
T ss_dssp TTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCSG
T ss_pred HcCCCCC--CcCCCCCcHHH-HHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHH
Confidence 9999999 99999999999 99999999999999999999999999999999998653
No 52
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=99.97 E-value=1.8e-30 Score=232.72 Aligned_cols=137 Identities=33% Similarity=0.462 Sum_probs=128.8
Q ss_pred ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86 (508)
Q Consensus 7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g 86 (508)
+.++|.+|..|.||||+|+..++.+++++|+++|++++.+|.+|+||||+|+.. |+.++|++|+++|+++|.+ |..|
T Consensus 27 Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~~d~~g~TpLh~A~~~-g~~~~v~~Ll~~gadvn~~--d~~G 103 (169)
T 4gpm_A 27 GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAEN-GHKEVVKLLISKGADVNAK--DSDG 103 (169)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTS
T ss_pred CCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhhhccCCCCHHHHHHHc-CCHHHHHHHHHCcCCCCCC--CCCC
Confidence 457788999999999999999999999999999999999999999999999998 9999999999999999998 8899
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCccc
Q 010517 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC 146 (508)
Q Consensus 87 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~ 146 (508)
+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++|+++.
T Consensus 104 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie 163 (169)
T 4gpm_A 104 RTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLE 163 (169)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-----
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcC
Confidence 999999999999999999999999999999999999999999999999999999999986
No 53
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=99.97 E-value=5.3e-31 Score=252.44 Aligned_cols=168 Identities=17% Similarity=0.107 Sum_probs=155.8
Q ss_pred cCccc----ccCCchHHHHHHHHc---CCHHHHHHHHHcCCCCCcc-----------CCCCChHHHHHHHhCCCHHHHHH
Q 010517 8 MNQHQ----QRQSKDELLYQWVIA---GDVDAIRALRSQGASLEWM-----------DKEGKTPLIVACMDSGLINVAKT 69 (508)
Q Consensus 8 ~~~~~----~~~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~~~~~~-----------d~~G~TpLh~Aa~~~g~~~~v~~ 69 (508)
.+++. +|..|.||||+|+.. |+.++|++|+++|++++.. |..|.||||+|+.. |+.+++++
T Consensus 30 ~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~ 108 (256)
T 2etb_A 30 KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK-RSLQCVKL 108 (256)
T ss_dssp CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHT-TCHHHHHH
T ss_pred CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHc-CCHHHHHH
Confidence 45555 799999999999999 9999999999999887643 47899999999998 99999999
Q ss_pred HHHcCCCCcccCCCCC-------------CCcHHHHHHHcCCHHHHHHHHH---CCCCccccCCCCCcHHHHHHH--hCC
Q 010517 70 LIELGANINAYRPGGR-------------GGTPLHHAAKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARI--KGH 131 (508)
Q Consensus 70 Ll~~ga~~n~~~~d~~-------------g~tpLh~A~~~g~~~~v~~Ll~---~ga~~~~~d~~g~TpLh~A~~--~g~ 131 (508)
|+++|++++.+ |.. |+||||+|+..|+.+++++|++ +|++++.+|..|+||||+|+. .++
T Consensus 109 Ll~~ga~~~~~--~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~ 186 (256)
T 2etb_A 109 LVENGADVHLR--ACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNS 186 (256)
T ss_dssp HHHTTCCTTCC--CCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSC
T ss_pred HHHcCCCCCcc--cccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCC
Confidence 99999999998 554 9999999999999999999999 999999999999999999999 888
Q ss_pred HH-------HHHHHHHcCCcc-------cccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCC
Q 010517 132 IN-------VVRAIESHICYF-------CGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN 181 (508)
Q Consensus 132 ~~-------~v~~Ll~~ga~~-------~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~ 181 (508)
.+ ++++|+++|+++ + .+|..|+|||| +|+..|+.+++++|+++|.+.
T Consensus 187 ~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~--~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~g~~~ 247 (256)
T 2etb_A 187 PENSALVIHMYDGLLQMGARLCPTVQLEE--ISNHQGLTPLK-LAAKEGKIEIFRHILQREFSG 247 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCGGG--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHcCCCccccccccc--ccCCCCCCHHH-HHHHhCCHHHHHHHHhCCCCC
Confidence 88 999999999999 7 89999999999 999999999999999998754
No 54
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=7.3e-31 Score=254.04 Aligned_cols=202 Identities=15% Similarity=0.166 Sum_probs=169.2
Q ss_pred cCcccccCCchHHHHHHHHcCCHHHHHHHHH----cCCCCC----ccCCCCChHHHHHHHh--CCCHHHHHHHHHcCCCC
Q 010517 8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRS----QGASLE----WMDKEGKTPLIVACMD--SGLINVAKTLIELGANI 77 (508)
Q Consensus 8 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~----~g~~~~----~~d~~G~TpLh~Aa~~--~g~~~~v~~Ll~~ga~~ 77 (508)
...+..|..|.|+||+|+..|+.++|+.||+ .+++++ ..|..|.||||+|+.. .|+.+++++|+++|+++
T Consensus 4 a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~ 83 (273)
T 2pnn_A 4 AGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKT 83 (273)
T ss_dssp -------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHT
T ss_pred ccCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccc
Confidence 3456678999999999999999998888887 566665 4588999999999962 38899999999998653
Q ss_pred -------c--ccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCC--------------CCCcHHHHHHHhCCHHH
Q 010517 78 -------N--AYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRND--------------DCHTALGVARIKGHINV 134 (508)
Q Consensus 78 -------n--~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~--------------~g~TpLh~A~~~g~~~~ 134 (508)
+ ..+.|..|+||||+|+..|+.+++++|+++|++++..+. .|.||||+|+..|+.++
T Consensus 84 ~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~ 163 (273)
T 2pnn_A 84 DSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAI 163 (273)
T ss_dssp TCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHH
T ss_pred cchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccccccccccccccccccCCCCHHHHHHHcCCHHH
Confidence 2 222367899999999999999999999999999999887 79999999999999999
Q ss_pred HHHHHH---cCCcccccccccCCCCHHHHHHhhcCC---------HHHHHHhhhCCCCCC-------CCCcccccccccc
Q 010517 135 VRAIES---HICYFCGWLREFYGPSFLEALAPQLMS---------RKIWVVVIPCGTANP-------SKPLRFELVIYPS 195 (508)
Q Consensus 135 v~~Ll~---~ga~~~~~~~~~~g~tpL~~~A~~~~~---------~~i~~~Ll~~g~~~~-------~~~~~~~~~l~~a 195 (508)
+++|++ .|++++ .+|.+|+|||| +|+..++ .+++++|+++|++++ ..+..+.++++.+
T Consensus 164 v~~Ll~~~~~gad~~--~~d~~g~tpLh-~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A 240 (273)
T 2pnn_A 164 VKFLLQNSWQPADIS--ARDSVGNTVLH-ALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALA 240 (273)
T ss_dssp HHHHHHCSSCCCCTT--CCCTTSCCHHH-HHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHH
T ss_pred HHHHHhcccCCCCce--eeCCCCCcHHH-HHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHH
Confidence 999999 899999 89999999999 8998888 799999999999886 3777889999999
Q ss_pred ccccChHHHHHHHHhhh
Q 010517 196 LQDVQPRAVIALWKAKI 212 (508)
Q Consensus 196 ~~~~~~~~v~~l~~~~~ 212 (508)
+..++...+..|+....
T Consensus 241 ~~~g~~~iv~~Ll~~ga 257 (273)
T 2pnn_A 241 ASSGKIGVLAYILQREI 257 (273)
T ss_dssp HHTTCHHHHHHHHHHHT
T ss_pred HHhChHHHHHHHHHCCC
Confidence 99999887777776654
No 55
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.97 E-value=2.2e-30 Score=251.39 Aligned_cols=163 Identities=21% Similarity=0.262 Sum_probs=156.1
Q ss_pred cccccCCchHHHHHHHHcCCHHHHHHHHHcCC-CCCccCCCCChHHHHHH-----HhCCCHHHHHHHHHcCCCCcccCCC
Q 010517 10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGA-SLEWMDKEGKTPLIVAC-----MDSGLINVAKTLIELGANINAYRPG 83 (508)
Q Consensus 10 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~-~~~~~d~~G~TpLh~Aa-----~~~g~~~~v~~Ll~~ga~~n~~~~d 83 (508)
+|.+|.+|.||||+|+..|+.++|++||++|+ +++..|..|.||||+|+ .. ++.+++++|++.|.+++.. |
T Consensus 104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~-~~~~~v~~Ll~~g~~~~~~--~ 180 (276)
T 4hbd_A 104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQ-DDIETVLQLFRLGNINAKA--S 180 (276)
T ss_dssp HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSH-HHHHHHHHHHHHSCTTCCC--T
T ss_pred CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhh-hhHHHHHHHHHcCCCcccc--C
Confidence 67889999999999999999999999999998 99999999999999999 55 7899999999999998887 7
Q ss_pred CCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHH-cCCcccccccccCCCCHHHHHH
Q 010517 84 GRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES-HICYFCGWLREFYGPSFLEALA 162 (508)
Q Consensus 84 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~-~ga~~~~~~~~~~g~tpL~~~A 162 (508)
..|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..|+.+++++|++ .|++++ .+|.+|.|||| +|
T Consensus 181 ~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~--~~d~~g~TpL~-~A 257 (276)
T 4hbd_A 181 QAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDIS--LTDRDGSTALM-VA 257 (276)
T ss_dssp TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTT--CCCTTSCCHHH-HH
T ss_pred CCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCc--CcCCCCCCHHH-HH
Confidence 899999999999999999999999999999999999999999999999999999999 899999 99999999999 99
Q ss_pred hhcCCHHHHHHhhhCC
Q 010517 163 PQLMSRKIWVVVIPCG 178 (508)
Q Consensus 163 ~~~~~~~i~~~Ll~~g 178 (508)
+..|+.+++++|+++.
T Consensus 258 ~~~g~~~iv~~Ll~~~ 273 (276)
T 4hbd_A 258 LDAGQSEIASMLYSRM 273 (276)
T ss_dssp HHHTCHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHhcc
Confidence 9999999999999875
No 56
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.97 E-value=9.9e-30 Score=224.39 Aligned_cols=154 Identities=27% Similarity=0.322 Sum_probs=147.2
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHc-CCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHH
Q 010517 16 SKDELLYQWVIAGDVDAIRALRSQ-GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA 94 (508)
Q Consensus 16 ~g~t~L~~Aa~~g~~~~v~~Ll~~-g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~ 94 (508)
.|.|+||+|+..|+.+++++|++. +.+++.+|..|.||||+ +.. |+.+++++|+++|++++.+ |..|+||||+|+
T Consensus 1 r~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~ 76 (156)
T 1bd8_A 1 RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMF-GSTAIALELLKQGASPNVQ--DTSGTSPVHDAA 76 (156)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHH
T ss_pred CcchHHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHc-CCHHHHHHHHHCCCCCCCc--CCCCCCHHHHHH
Confidence 367999999999999999999998 44899999999999999 877 9999999999999999998 889999999999
Q ss_pred HcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHh
Q 010517 95 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVV 174 (508)
Q Consensus 95 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~L 174 (508)
..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++. ++++ .+|.+|.|||| +|+..++.+++++|
T Consensus 77 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~--~~~~~g~t~l~-~A~~~~~~~~v~~L 152 (156)
T 1bd8_A 77 RTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLH--RRDARGLTPLE-LALQRGAQDLVDIL 152 (156)
T ss_dssp HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTT--CCCTTSCCHHH-HHHHSCCHHHHHHH
T ss_pred HcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCC--CcCCCCCCHHH-HHHHcCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 9998 89999999999 99999999999999
Q ss_pred hhC
Q 010517 175 IPC 177 (508)
Q Consensus 175 l~~ 177 (508)
+++
T Consensus 153 l~~ 155 (156)
T 1bd8_A 153 QGH 155 (156)
T ss_dssp HTT
T ss_pred Hhh
Confidence 864
No 57
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=239.04 Aligned_cols=197 Identities=19% Similarity=0.204 Sum_probs=182.5
Q ss_pred cCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCC-CCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517 8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDK-EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86 (508)
Q Consensus 8 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~-~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g 86 (508)
.+.+.++..|.||||+|+..|+.++|++|+++|++++..+. .|.||||+|+.. |+.+++++|+++|++++.+ |..|
T Consensus 33 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g 109 (240)
T 3eu9_A 33 YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ-GHLSMVVQLMKYGADPSLI--DGEG 109 (240)
T ss_dssp CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTS
T ss_pred CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHc-CCHHHHHHHHHcCCCCccc--CCCC
Confidence 56677889999999999999999999999999999876654 599999999998 9999999999999999998 8899
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCC-HHHHHHHHHcCCccccccccc-CCCCHHHHHHhh
Q 010517 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGH-INVVRAIESHICYFCGWLREF-YGPSFLEALAPQ 164 (508)
Q Consensus 87 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~-~~~v~~Ll~~ga~~~~~~~~~-~g~tpL~~~A~~ 164 (508)
.||||+|+..|+.+++++|+++|++++..|..|.||||+|+..++ .+++++|++.|++++ ..+. .|.|||| +|+.
T Consensus 110 ~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~--~~~~~~g~t~L~-~A~~ 186 (240)
T 3eu9_A 110 CSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVN--LGDKYHKNTALH-WAVL 186 (240)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTT--CCCTTTCCCHHH-HHHH
T ss_pred CCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcc--hhhccCCCcHHH-HHHH
Confidence 999999999999999999999999999999999999999997776 899999999999999 7776 8999999 9999
Q ss_pred cCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHh
Q 010517 165 LMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKA 210 (508)
Q Consensus 165 ~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~ 210 (508)
.++.+++++|+++|++++..+..+.++++.+.+.++...+..|+..
T Consensus 187 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 187 AGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 9999999999999999999998999999999999887777665544
No 58
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=99.97 E-value=3.8e-29 Score=249.52 Aligned_cols=225 Identities=20% Similarity=0.100 Sum_probs=191.0
Q ss_pred cCcccccC-CchHHHHHHHHcCCHHHHHHHHHcCCCC---------------------------------CccCCCCChH
Q 010517 8 MNQHQQRQ-SKDELLYQWVIAGDVDAIRALRSQGASL---------------------------------EWMDKEGKTP 53 (508)
Q Consensus 8 ~~~~~~~~-~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---------------------------------~~~d~~G~Tp 53 (508)
.++|.++. .|.||||+|+..|+.++|++||++|+++ +.+|..|.||
T Consensus 49 advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~t~ 128 (337)
T 4g8k_A 49 ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTA 128 (337)
T ss_dssp CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCBCTTCCBH
T ss_pred CCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhcccchhhHHhhhccchhhhhccCCCCH
Confidence 45666654 5999999999999999999999998765 4567789999
Q ss_pred HHHHHHhCCCHHHHHHHHHcCCCCcccC--------CCCCCCcHHHHHHHcCCHHHHHHHHH-CCCCccccCCCCCcHHH
Q 010517 54 LIVACMDSGLINVAKTLIELGANINAYR--------PGGRGGTPLHHAAKRGLEPTVRLLLS-CGANALVRNDDCHTALG 124 (508)
Q Consensus 54 Lh~Aa~~~g~~~~v~~Ll~~ga~~n~~~--------~d~~g~tpLh~A~~~g~~~~v~~Ll~-~ga~~~~~d~~g~TpLh 124 (508)
||+|+.. |+.+++++|+++|++++... .+..|.||||+|+..|+.++|++||+ .|++++.+|..|.|+||
T Consensus 129 l~~A~~~-~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~~d~~g~t~l~ 207 (337)
T 4g8k_A 129 FMEAAVY-GKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALI 207 (337)
T ss_dssp HHHHHHT-TCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTCCCTTSCCHHH
T ss_pred HHHHHHc-CcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCccCCCCCcHHH
Confidence 9999998 99999999999999998652 14468999999999999999999995 69999999999999999
Q ss_pred HHHHhCC----HHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhC-CCCCCCCCcccccccccccccc
Q 010517 125 VARIKGH----INVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC-GTANPSKPLRFELVIYPSLQDV 199 (508)
Q Consensus 125 ~A~~~g~----~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~-g~~~~~~~~~~~~~l~~a~~~~ 199 (508)
+++..++ .+++++|+++|++++ .+|.+|+|||| +|+..++.+++++|+.. |++++.++..++++++.|++.+
T Consensus 208 ~~~~~~~~~~~~~i~~lLl~~gad~n--~~d~~g~t~L~-~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g 284 (337)
T 4g8k_A 208 HALLSSDDSDVEAITHLLLDHGADVN--VRGERGKTPLI-LAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELK 284 (337)
T ss_dssp HHHHHSCTTTHHHHHHHHHHTTCCTT--CCCGGGCCHHH-HHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTT
T ss_pred HHHHHcCcccHHHHHHHHHHCCCCCC--CcCCCCCCHHH-HHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcC
Confidence 9887654 468999999999999 89999999999 99999999999999875 8899999999999999999999
Q ss_pred ChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhcCCChhHHHHHH
Q 010517 200 QPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASANEGDKHQLQWLD 252 (508)
Q Consensus 200 ~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~~~~~~~l~~l~ 252 (508)
+...+..|+ .+|+| ++ .+++|++|... ++...++.|+
T Consensus 285 ~~~iv~~Ll--------~~GAd--~n-----~~~~L~~A~~~-~~~~iv~~Ll 321 (337)
T 4g8k_A 285 LKKIAELLC--------KRGAS--TD-----CGDLVMTARRN-YDHSLVKVLL 321 (337)
T ss_dssp CHHHHHHHH--------TTSCS--ST-----TCCHHHHHHHT-TCHHHHHHHH
T ss_pred CHHHHHHHH--------HCCCC--CC-----CCCHHHHHHHc-CCHHHHHHHH
Confidence 866655444 34676 33 35799998764 4556666665
No 59
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=99.97 E-value=2.3e-30 Score=250.54 Aligned_cols=165 Identities=19% Similarity=0.140 Sum_probs=152.0
Q ss_pred cccCCchHHHHHHHHc---CCHHHHHHHHHcCCCC-------Cc----cCCCCChHHHHHHHhCCCHHHHHHHHHcCCCC
Q 010517 12 QQRQSKDELLYQWVIA---GDVDAIRALRSQGASL-------EW----MDKEGKTPLIVACMDSGLINVAKTLIELGANI 77 (508)
Q Consensus 12 ~~~~~g~t~L~~Aa~~---g~~~~v~~Ll~~g~~~-------~~----~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~ 77 (508)
.+|..|.||||+|+.. |+.++|++||++|+++ +. .|..|.||||+|+.. |+.+++++|+++|+++
T Consensus 49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~-g~~~~v~~Ll~~ga~~ 127 (273)
T 2pnn_A 49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIER-RNMTLVTLLVENGADV 127 (273)
T ss_dssp SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHT-TCHHHHHHHHHTTCCT
T ss_pred ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHc-CCHHHHHHHHHCCCCc
Confidence 3588999999999987 9999999999998653 22 567999999999998 9999999999999999
Q ss_pred cccCCCC--------------CCCcHHHHHHHcCCHHHHHHHHH---CCCCccccCCCCCcHHHHHHHhCC---------
Q 010517 78 NAYRPGG--------------RGGTPLHHAAKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARIKGH--------- 131 (508)
Q Consensus 78 n~~~~d~--------------~g~tpLh~A~~~g~~~~v~~Ll~---~ga~~~~~d~~g~TpLh~A~~~g~--------- 131 (508)
+.+ +. .|+||||+|+..|+.+++++|++ +|++++.+|..|+||||+|+..|+
T Consensus 128 ~~~--~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~ 205 (273)
T 2pnn_A 128 QAA--ANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFV 205 (273)
T ss_dssp TCC--BCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHH
T ss_pred Ccc--ccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHH
Confidence 998 54 79999999999999999999999 999999999999999999999998
Q ss_pred HHHHHHHHHcCCcccc-----cccccCCCCHHHHHHhhcCCHHHHHHhhhCCCC
Q 010517 132 INVVRAIESHICYFCG-----WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 180 (508)
Q Consensus 132 ~~~v~~Ll~~ga~~~~-----~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~ 180 (508)
.+++++|+++|++++. ..+|..|+|||| +|+..|+.+++++|+++|+.
T Consensus 206 ~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~-~A~~~g~~~iv~~Ll~~ga~ 258 (273)
T 2pnn_A 206 TSMYNEILILGAKLHPTLKLEEITNRKGLTPLA-LAASSGKIGVLAYILQREIH 258 (273)
T ss_dssp HHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH-HHHHTTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhhhhcccccccccccCCCCCCHHH-HHHHhChHHHHHHHHHCCCC
Confidence 8999999999999862 258999999999 99999999999999999993
No 60
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=99.97 E-value=4.8e-30 Score=250.18 Aligned_cols=183 Identities=15% Similarity=0.090 Sum_probs=165.2
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC-CcHHHHHH
Q 010517 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG-GTPLHHAA 94 (508)
Q Consensus 16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g-~tpLh~A~ 94 (508)
+|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..| .||||+|+
T Consensus 61 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--~~~g~~t~L~~A~ 137 (285)
T 3kea_A 61 ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDS-GNMQTVKLFVKKNWRLMFY--GKTGWKTSFYHAV 137 (285)
T ss_dssp TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHHCGGGGGC--SSSGGGSHHHHHH
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHc-CCHHHHHHHHhcCCCCCcc--CCCCCCCHHHHHH
Confidence 599999999999999999999999999999999999999999998 9999999999999999998 7888 79999999
Q ss_pred HcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCH-HHHHHhhcCCHHHHHH
Q 010517 95 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSF-LEALAPQLMSRKIWVV 173 (508)
Q Consensus 95 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tp-L~~~A~~~~~~~i~~~ 173 (508)
..|+.+++++|+++|+++... ..|.||||+|+..|+.+++++|+++|++++ .+|..|+|| || +|+..++.+++++
T Consensus 138 ~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n--~~~~~g~t~~L~-~A~~~~~~~~v~~ 213 (285)
T 3kea_A 138 MLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTN--TNNSLLFIPDIK-LAIDNKDIEMLQA 213 (285)
T ss_dssp HTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTC--TTCCCBCCTTHH-HHHHHTCHHHHHH
T ss_pred HcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCC--cccCCCCChHHH-HHHHcCCHHHHHH
Confidence 999999999999999886322 289999999999999999999999999999 899999998 99 9999999999999
Q ss_pred hhhCCCCCCCCCccccccccccccccChHHHHHHHHhhh
Q 010517 174 VIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKI 212 (508)
Q Consensus 174 Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~ 212 (508)
|+++|++++..+. .+...++...+..|+....
T Consensus 214 Ll~~gad~~~~~~-------~a~~~~~~~iv~~Ll~~g~ 245 (285)
T 3kea_A 214 LFKYDINIYSANL-------ENVLLDDAEIAKMIIEKHV 245 (285)
T ss_dssp HTTSCBCSTTTTG-------GGGTTTCHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCCh-------hhhhcCCHHHHHHHHHcCC
Confidence 9999999988772 3344566666666555443
No 61
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=4.3e-30 Score=246.59 Aligned_cols=165 Identities=20% Similarity=0.116 Sum_probs=151.0
Q ss_pred cCCchHHHHHHH---HcCCHHHHHHHHHcCCC-----------CCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcc
Q 010517 14 RQSKDELLYQWV---IAGDVDAIRALRSQGAS-----------LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINA 79 (508)
Q Consensus 14 ~~~g~t~L~~Aa---~~g~~~~v~~Ll~~g~~-----------~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~ 79 (508)
|..|.||||+|+ ..|+.++|++|++.|++ ++..|..|.||||+|+.. |+.++|++|+++|++++.
T Consensus 43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~ 121 (260)
T 3jxi_A 43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIER-RCKHYVELLVEKGADVHA 121 (260)
T ss_dssp TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHT-TCHHHHHHHHHTTCCTTC
T ss_pred cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHc-CCHHHHHHHHhCCCCcCc
Confidence 477999999999 77999999999998754 445566899999999998 999999999999999999
Q ss_pred cCCC--------------CCCCcHHHHHHHcCCHHHHHHHHH---CCCCccccCCCCCcHHHHHHHhCC---------HH
Q 010517 80 YRPG--------------GRGGTPLHHAAKRGLEPTVRLLLS---CGANALVRNDDCHTALGVARIKGH---------IN 133 (508)
Q Consensus 80 ~~~d--------------~~g~tpLh~A~~~g~~~~v~~Ll~---~ga~~~~~d~~g~TpLh~A~~~g~---------~~ 133 (508)
+ + ..|+||||+|+..|+.+++++|++ +|++++.+|..|+||||+|+..++ .+
T Consensus 122 ~--~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~ 199 (260)
T 3jxi_A 122 Q--ARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTK 199 (260)
T ss_dssp C--CEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHH
T ss_pred c--ccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHH
Confidence 8 5 689999999999999999999999 999999999999999999999888 79
Q ss_pred HHHHHHHcCCcccc-----cccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCC
Q 010517 134 VVRAIESHICYFCG-----WLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANP 182 (508)
Q Consensus 134 ~v~~Ll~~ga~~~~-----~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~ 182 (508)
++++|+++|++++. +.+|..|+|||| +|+..|+.+++++|+++|.+..
T Consensus 200 ~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~-~A~~~g~~~~v~~Ll~~g~~~~ 252 (260)
T 3jxi_A 200 MYDLLLIKCAKLFPDTNLEALLNNDGLSPLM-MAAKTGKIGIFQHIIRREIADA 252 (260)
T ss_dssp HHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH-HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCcccccccchhhcccCCCCCHHH-HHHHcCCHHHHHHHHHhCCCcc
Confidence 99999999999831 279999999999 9999999999999999997553
No 62
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=99.96 E-value=5.1e-30 Score=246.08 Aligned_cols=194 Identities=16% Similarity=0.119 Sum_probs=170.7
Q ss_pred cCCchHHHHHHHHcCCHHHHHHH----HHcCCCCCccC----CCCChHHHHHH---HhCCCHHHHHHHHHcCCC------
Q 010517 14 RQSKDELLYQWVIAGDVDAIRAL----RSQGASLEWMD----KEGKTPLIVAC---MDSGLINVAKTLIELGAN------ 76 (508)
Q Consensus 14 ~~~g~t~L~~Aa~~g~~~~v~~L----l~~g~~~~~~d----~~G~TpLh~Aa---~~~g~~~~v~~Ll~~ga~------ 76 (508)
+..|+++||.|++.|+.+.|+.| ++.|++++..+ ..|.||||+|+ .. |+.+++++|+++|++
T Consensus 2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~-g~~~~v~~Ll~~g~~~~~~~~ 80 (260)
T 3jxi_A 2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSA-GRNDTIPILLDIAEKTGNMRE 80 (260)
T ss_dssp CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBT-TBCTHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhc-CCHHHHHHHHHhcccccchHh
Confidence 45789999999999999955544 45999998776 77999999999 55 999999999999854
Q ss_pred ---CcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccC--------------CCCCcHHHHHHHhCCHHHHHHHH
Q 010517 77 ---INAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN--------------DDCHTALGVARIKGHINVVRAIE 139 (508)
Q Consensus 77 ---~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d--------------~~g~TpLh~A~~~g~~~~v~~Ll 139 (508)
.+..+.|..|+||||+|+..|+.++|++|+++|++++..+ ..|.||||+|+..|+.+++++|+
T Consensus 81 ~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll 160 (260)
T 3jxi_A 81 FINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLT 160 (260)
T ss_dssp HHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHH
T ss_pred hhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHH
Confidence 2222225689999999999999999999999999999998 68999999999999999999999
Q ss_pred H---cCCcccccccccCCCCHHHHHHhhcCC---------HHHHHHhhhCCCCC-------CCCCccccccccccccccC
Q 010517 140 S---HICYFCGWLREFYGPSFLEALAPQLMS---------RKIWVVVIPCGTAN-------PSKPLRFELVIYPSLQDVQ 200 (508)
Q Consensus 140 ~---~ga~~~~~~~~~~g~tpL~~~A~~~~~---------~~i~~~Ll~~g~~~-------~~~~~~~~~~l~~a~~~~~ 200 (508)
+ .|++++ .+|..|+|||| +|+..++ .+++++|+++|+++ +..+..+.++++.++..++
T Consensus 161 ~~~~~ga~~~--~~d~~g~TpLh-~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~ 237 (260)
T 3jxi_A 161 ENGHKQADLR--RQDSRGNTVLH-ALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGK 237 (260)
T ss_dssp HCSSCCCCTT--CCCTTSCCHHH-HHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTC
T ss_pred hccccCCCCc--ccCCCCCcHHH-HHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHHHHHHHcCC
Confidence 9 999999 99999999999 8998777 79999999999988 5688889999999999999
Q ss_pred hHHHHHHHHhh
Q 010517 201 PRAVIALWKAK 211 (508)
Q Consensus 201 ~~~v~~l~~~~ 211 (508)
...+..|+...
T Consensus 238 ~~~v~~Ll~~g 248 (260)
T 3jxi_A 238 IGIFQHIIRRE 248 (260)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 88777776554
No 63
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.96 E-value=8.3e-30 Score=253.49 Aligned_cols=177 Identities=13% Similarity=0.079 Sum_probs=148.7
Q ss_pred cCccc-ccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCC---HHHHHHHHHcC-CCCcccCC
Q 010517 8 MNQHQ-QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGL---INVAKTLIELG-ANINAYRP 82 (508)
Q Consensus 8 ~~~~~-~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~---~~~v~~Ll~~g-a~~n~~~~ 82 (508)
.++|. +|..|.||||+|+..|+.++|++||++|++++.+|.+|+||||+|+.. |+ .++++.|++++ ++++.+
T Consensus 121 ~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~-g~~~~~~~~~~ll~~~~~~~~~~-- 197 (327)
T 1sw6_A 121 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKS-VNNYDSGTFEALLDYLYPCLILE-- 197 (327)
T ss_dssp CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHS-SHHHHTTCHHHHHHHHGGGGGEE--
T ss_pred CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHh-cccccHHHHHHHHHhhhccccCC--
Confidence 56677 799999999999999999999999999999999999999999999987 77 68888888886 778888
Q ss_pred CCCCCcHHHHHHH----cCCHHHHHHHHHC--------------------CCCccccCCCCCcHHHHHHHhCCHHHHHHH
Q 010517 83 GGRGGTPLHHAAK----RGLEPTVRLLLSC--------------------GANALVRNDDCHTALGVARIKGHINVVRAI 138 (508)
Q Consensus 83 d~~g~tpLh~A~~----~g~~~~v~~Ll~~--------------------ga~~~~~d~~g~TpLh~A~~~g~~~~v~~L 138 (508)
|..|+||||+|+. .|+.+++++|++. |++++.+|..|.||||+|+. +++|
T Consensus 198 d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~L 271 (327)
T 1sw6_A 198 DSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWI 271 (327)
T ss_dssp CTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHH
T ss_pred CCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHH
Confidence 8899999999998 8999999999877 88999999999999999985 8888
Q ss_pred HHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccc
Q 010517 139 ESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQD 198 (508)
Q Consensus 139 l~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~ 198 (508)
+++ +++ .+|.+|+|||| +|+..|+.+++++|+++|++++.++..+.++++.+++.
T Consensus 272 l~~--~~n--~~d~~G~TpLh-~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~ 326 (327)
T 1sw6_A 272 IAN--MLN--AQDSNGDTCLN-IAARLGNISIVDALLDYGADPFIANKSGLRPVDFGAGL 326 (327)
T ss_dssp HHH--TTT--CCCTTSCCHHH-HHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTCC-
T ss_pred HHh--CCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHhc
Confidence 888 466 78999999999 99999999999999999999999999999999998754
No 64
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.96 E-value=7e-30 Score=242.38 Aligned_cols=167 Identities=12% Similarity=0.040 Sum_probs=125.1
Q ss_pred cCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHH
Q 010517 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA 93 (508)
Q Consensus 14 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A 93 (508)
+..|.||||.|+..|+.++++.||++|++++. +..|.||||+|+.. |+.+++++|+++|+++|.+ |..|+||||+|
T Consensus 2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~-~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~A 77 (239)
T 1ycs_B 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLE-GEFDLVQRIIYEVDDPSLP--NDEGITALHNA 77 (239)
T ss_dssp ------------------------------------CHHHHHHHHHH-TCHHHHHHHTSTTSSCCCC--CTTSCCHHHHH
T ss_pred CccccccCchhhhhhhHHHHHHHhccCCCccc-CchhhHHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHH
Confidence 34799999999999999999999999999986 47899999999998 9999999999999999998 88999999999
Q ss_pred HHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCC-CHHHHHH--hhcCCHHH
Q 010517 94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGP-SFLEALA--PQLMSRKI 170 (508)
Q Consensus 94 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~-tpL~~~A--~~~~~~~i 170 (508)
+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .++..|. |||| +| +..|+.++
T Consensus 78 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~~~~t~l~-~a~~~~~g~~~~ 154 (239)
T 1ycs_B 78 VCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVF--AMTYSDMQTAAD-KCEEMEEGYTQC 154 (239)
T ss_dssp HHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCSSSCCCHHH-HCCSSSTTCCCH
T ss_pred HHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--eecCCCCcchHH-HHHHhhhccHHH
Confidence 99999999999999999999999999999999999999999999999999999 8887777 9999 88 78899999
Q ss_pred HHHhhhCCCCCCCCCcc
Q 010517 171 WVVVIPCGTANPSKPLR 187 (508)
Q Consensus 171 ~~~Ll~~g~~~~~~~~~ 187 (508)
+++|+++|++.+..+..
T Consensus 155 ~~~Ll~~~a~~~~~~~~ 171 (239)
T 1ycs_B 155 SQFLYGVQEKMGIMNKG 171 (239)
T ss_dssp HHHHHHHHHHTTTTGGG
T ss_pred HHHHHHhhhcccccccc
Confidence 99999999988776533
No 65
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.7e-30 Score=242.67 Aligned_cols=186 Identities=19% Similarity=0.083 Sum_probs=168.5
Q ss_pred cccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcH
Q 010517 10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89 (508)
Q Consensus 10 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tp 89 (508)
.+..+.+|.|+||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|+++|.+ |..|+||
T Consensus 14 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~-g~~~~v~~Ll~~ga~~n~~--d~~g~tp 90 (229)
T 2vge_A 14 ARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICG-ANYSIVDFLITAGANVNSP--DSHGWTP 90 (229)
T ss_dssp CCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCCH
T ss_pred ccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHCCCCCCCC--CCCCCCH
Confidence 345678899999999999999999999999999999999999999999998 9999999999999999998 8899999
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCccccC-CCCCcHHHHH--HHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcC
Q 010517 90 LHHAAKRGLEPTVRLLLSCGANALVRN-DDCHTALGVA--RIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLM 166 (508)
Q Consensus 90 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~TpLh~A--~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~ 166 (508)
||+|+..|+.+++++|+++|++++..+ ..|.||||+| +..|+.+++++|++.|++++ .+|..|.|+++ .+....
T Consensus 91 Lh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~--~~~~~~~~~l~-~~~~~~ 167 (229)
T 2vge_A 91 LHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMG--LMNSGAVYALW-DYSAEF 167 (229)
T ss_dssp HHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTT--TSGGGEEEESS-CBCCSS
T ss_pred HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcc--cccCCchHHHH-HHhhcc
Confidence 999999999999999999999999987 6999999999 99999999999999999999 88999999999 444333
Q ss_pred CHHHHHHhhhCCCC--CCCCCccccccccccccccChHHH
Q 010517 167 SRKIWVVVIPCGTA--NPSKPLRFELVIYPSLQDVQPRAV 204 (508)
Q Consensus 167 ~~~i~~~Ll~~g~~--~~~~~~~~~~~l~~a~~~~~~~~v 204 (508)
..++|+..|++ ++.++..+.++++.++..++...+
T Consensus 168 ---~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v 204 (229)
T 2vge_A 168 ---GDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYV 204 (229)
T ss_dssp ---TTBCCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEE
T ss_pred ---ccccCccccccccccccCCCcccHHHHHHHcCCccee
Confidence 34688999988 567777899999999988874443
No 66
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}
Probab=99.96 E-value=5.1e-29 Score=234.88 Aligned_cols=192 Identities=13% Similarity=0.045 Sum_probs=163.1
Q ss_pred HHHHHHcCCCCCccC---CCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCC
Q 010517 33 IRALRSQGASLEWMD---KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCG 109 (508)
Q Consensus 33 v~~Ll~~g~~~~~~d---~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g 109 (508)
|+.||++|++++..+ .+|.||||+|+.. |+.+++++|++.|+++|.+ |..|+||||+|+..|+.+++++|+++|
T Consensus 1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--d~~g~tpLh~A~~~g~~~~v~~Ll~~g 77 (229)
T 2vge_A 1 MRSVLRKAGSPRKARRARLNPLVLLLDAALT-GELEVVQQAVKEMNDPSQP--NEEGITALHNAICGANYSIVDFLITAG 77 (229)
T ss_dssp ---------CCCCCCCTTSCHHHHHHHHHHH-TCHHHHHHHHHHSSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CeehhccCCCCccccccccchhHHHHHHHHc-CCHHHHHHHHhcCCCCCCC--CCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 578899999876554 4677889999998 9999999999999999998 889999999999999999999999999
Q ss_pred CCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccc-cCCCCHHHHHH--hhcCCHHHHHHhhhCCCCCCCCCc
Q 010517 110 ANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLRE-FYGPSFLEALA--PQLMSRKIWVVVIPCGTANPSKPL 186 (508)
Q Consensus 110 a~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~-~~g~tpL~~~A--~~~~~~~i~~~Ll~~g~~~~~~~~ 186 (508)
++++.+|..|.||||+|+..|+.+++++|+++|++++ .++ .+|+|||| +| +..++.+++++|+++|++++..+.
T Consensus 78 a~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~--~~~~~~g~tpL~-~A~a~~~~~~~~v~~Ll~~ga~~~~~~~ 154 (229)
T 2vge_A 78 ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIF--ATTLSDGATAFE-KCDPYREGYADCATYLADVEQSMGLMNS 154 (229)
T ss_dssp CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTT--CCCSSTTCCTGG-GCCTTSTTHHHHHHHHHHHHHHTTTSGG
T ss_pred CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcc--cccCCCCCCHHH-HHHHHhcChHHHHHHHHHcCCCcccccC
Confidence 9999999999999999999999999999999999999 665 69999999 88 999999999999999999999887
Q ss_pred cccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccCCCcchhHhhhhc
Q 010517 187 RFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQATKIRYKFASAN 241 (508)
Q Consensus 187 ~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~~~~t~l~~a~~~ 241 (508)
.+.++++....... .+.+...+.+..++.+|..|.|||++|+..
T Consensus 155 ~~~~~l~~~~~~~~-----------~~~ll~~ga~~~~~~~d~~G~TpL~~A~~~ 198 (229)
T 2vge_A 155 GAVYALWDYSAEFG-----------DELSFREGESVTVLRRDGPEETDWWWAALH 198 (229)
T ss_dssp GEEEESSCBCCSST-----------TBCCBCTTCEEEEEESSCTTCSSEEEEEET
T ss_pred CchHHHHHHhhccc-----------cccCccccccccccccCCCcccHHHHHHHc
Confidence 77777776554433 245556677766888999999999999753
No 67
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.95 E-value=7.8e-29 Score=219.03 Aligned_cols=143 Identities=25% Similarity=0.240 Sum_probs=120.9
Q ss_pred ccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCc-H
Q 010517 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGT-P 89 (508)
Q Consensus 11 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~t-p 89 (508)
+..++.|.|+||+|+..|+.++|++|+++|++++.+|..|+||||+|+ . |+.+++++|+++|++++.+ |..|+| |
T Consensus 6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~-~~~~~v~~Ll~~g~~~~~~--d~~g~ttp 81 (156)
T 1bi7_B 6 GSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMM-M-GSARVAELLLLHGAEPNCA--DPATLTRP 81 (156)
T ss_dssp ----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCSSSCCTTTSSC-T-TCHHHHHHHHTTTCCCCCC--CTTTCCCH
T ss_pred cCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHH-c-CCHHHHHHHHHcCCCCCCc--CCCCCcHH
Confidence 456788999999999999999999999999999999999999999985 6 9999999999999999998 889999 9
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHH
Q 010517 90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLE 159 (508)
Q Consensus 90 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~ 159 (508)
||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++++ .++..|.||.+
T Consensus 82 L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~~~ 149 (156)
T 1bi7_B 82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTR--GSNHARIDAAE 149 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC-----------------
T ss_pred HHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCC--ccCcCcCcccc
Confidence 999999999999999999999999999999999999999999999999999999999 89999999987
No 68
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.95 E-value=2.1e-28 Score=210.97 Aligned_cols=133 Identities=26% Similarity=0.309 Sum_probs=104.8
Q ss_pred cCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCC-C
Q 010517 8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGR-G 86 (508)
Q Consensus 8 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~-g 86 (508)
.+++.++..|.||||+|+..|+.++|++|+++|++++.+|..|+||||+|+. |+.+++++|+++|++++.+ |.. |
T Consensus 3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~--~~~~~v~~Ll~~g~~~~~~--~~~~g 78 (136)
T 1d9s_A 3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMM--GSAQVAELLLLHGAEPNCA--DPATL 78 (136)
T ss_dssp CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCTTTTTSTT--SCHHHHHHHHHHTCCSSCC--BTTTT
T ss_pred CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCCcCCCCCCHHHHHHc--CCHHHHHHHHHCCCCCCCc--CCCCC
Confidence 3556677778888888888888888888888888888888888888888775 7778888888888888777 666 7
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCc
Q 010517 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY 144 (508)
Q Consensus 87 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~ 144 (508)
+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|+++|++
T Consensus 79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp BCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 8888888888888888888888888888888888888888888888888888877764
No 69
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1
Probab=99.95 E-value=8.4e-29 Score=246.22 Aligned_cols=198 Identities=15% Similarity=-0.009 Sum_probs=163.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcC
Q 010517 19 ELLYQWVIAGDVDAIRALRSQGASLEW-MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRG 97 (508)
Q Consensus 19 t~L~~Aa~~g~~~~v~~Ll~~g~~~~~-~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g 97 (508)
+.+|+|+..+..+++++|++.|+++|. +|..|.||||+|+.. |+.++|++|+++|++++.+ |..|+||||+|+..|
T Consensus 99 ~~~~~a~~~~~~~~~~~l~~~g~dvn~~~d~~g~TpLh~Aa~~-g~~~~v~~Ll~~Gad~n~~--d~~g~TpLh~A~~~g 175 (327)
T 1sw6_A 99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSI-ANLELVKHLVKHGSNRLYG--DNMGESCLVKAVKSV 175 (327)
T ss_dssp -----CHHHHHHHHHHHCTTSCCCSCSCCSTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTBC--CTTCCCHHHHHHHSS
T ss_pred chhHHHHHhhHHHHHHHHHhcCCCcccccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHhc
Confidence 446888888899999999999999999 899999999999998 9999999999999999998 889999999999999
Q ss_pred C---HHHHHHHHHCC-CCccccCCCCCcHHHHHHH----hCCHHHHHHHHHc--------------------CCcccccc
Q 010517 98 L---EPTVRLLLSCG-ANALVRNDDCHTALGVARI----KGHINVVRAIESH--------------------ICYFCGWL 149 (508)
Q Consensus 98 ~---~~~v~~Ll~~g-a~~~~~d~~g~TpLh~A~~----~g~~~~v~~Ll~~--------------------ga~~~~~~ 149 (508)
+ .++++.|++++ ++++.+|..|.||||+|+. .|+.+++++|++. |++++ .
T Consensus 176 ~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~--~ 253 (327)
T 1sw6_A 176 NNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPN--D 253 (327)
T ss_dssp HHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC------------
T ss_pred ccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcc--c
Confidence 8 68888888886 7899999999999999999 8999999999987 78888 8
Q ss_pred cccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHHHhhhcCCCCCCCCCcceeccC
Q 010517 150 REFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWKAKIDEPKFHQPDPSLTIYDQ 229 (508)
Q Consensus 150 ~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~~~~~~~~~~~d~~i~~~d~ 229 (508)
++..|.|||| .|+. +++|+++ +++.++..+.+++|.++..++...+..|+. +++| ++.+|.
T Consensus 254 ~~~~g~t~L~-~a~~------~~~Ll~~--~~n~~d~~G~TpLh~A~~~g~~~~v~~Ll~--------~Gad--~~~~d~ 314 (327)
T 1sw6_A 254 KNGERKDSIL-ENLD------LKWIIAN--MLNAQDSNGDTCLNIAARLGNISIVDALLD--------YGAD--PFIANK 314 (327)
T ss_dssp ------CHHH-HHCS------HHHHHHH--TTTCCCTTSCCHHHHHHHHCCHHHHHHHHH--------TTCC--TTCCCT
T ss_pred ccccCCChhH-HHHH------HHHHHHh--CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH--------cCCC--CcccCC
Confidence 9999999999 7775 8889888 477778889999999999998766665543 3788 888999
Q ss_pred CCcchhHhhhh
Q 010517 230 ATKIRYKFASA 240 (508)
Q Consensus 230 ~~~t~l~~a~~ 240 (508)
.|+||||+|+.
T Consensus 315 ~G~TpL~~A~~ 325 (327)
T 1sw6_A 315 SGLRPVDFGAG 325 (327)
T ss_dssp TSCCGGGGTCC
T ss_pred CCCCHHHHHHh
Confidence 99999999975
No 70
>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}
Probab=99.95 E-value=8.7e-29 Score=240.11 Aligned_cols=189 Identities=16% Similarity=0.136 Sum_probs=175.9
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCC--CCccCCCCChHHHHHHHhCCCHHHHHHHHHcCC-CCcccCCCCCCCcHHHH
Q 010517 16 SKDELLYQWVIAGDVDAIRALRSQGAS--LEWMDKEGKTPLIVACMDSGLINVAKTLIELGA-NINAYRPGGRGGTPLHH 92 (508)
Q Consensus 16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~--~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga-~~n~~~~d~~g~tpLh~ 92 (508)
.+.+++|.|+..|+.+.++.|++.+.+ +|.+|.+|.||||+|+.. |+.+++++|++.|+ +++.. |..|+||||+
T Consensus 75 ~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~~d~~g~T~Lh~A~~~-g~~~~v~~Ll~~g~~~~~~~--~~~g~tpL~~ 151 (276)
T 4hbd_A 75 ACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSH-ANFPVVQQLLDSGVCKVDKQ--NRAGYSPIML 151 (276)
T ss_dssp HHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTSCCCTTCC--CTTSCCHHHH
T ss_pred HhccCCCHHHHHHHHHHHHHHHHHHHhhcCcCCCCCCCCHHHHHHHC-CCHHHHHHHHHCCCCcCCCC--CCCCCCHHHH
Confidence 356778999999999999999998766 899999999999999998 99999999999998 99988 8899999999
Q ss_pred HH-----HcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCC
Q 010517 93 AA-----KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS 167 (508)
Q Consensus 93 A~-----~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~ 167 (508)
|+ ..++.+++++|++.|.+++..|..|.||||+|+..|+.+++++|+++|++++ .+|.+|+|||| +|+..|+
T Consensus 152 a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n--~~d~~G~TpLh-~A~~~g~ 228 (276)
T 4hbd_A 152 TALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVN--VQDDDGSTALM-CACEHGH 228 (276)
T ss_dssp GGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHHTC
T ss_pred HHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCC--CCCCCCCCHHH-HHHHCCC
Confidence 99 6689999999999999999999999999999999999999999999999999 99999999999 9999999
Q ss_pred HHHHHHhhh-CCCCCCCCCccccccccccccccChHHHHHHHHh
Q 010517 168 RKIWVVVIP-CGTANPSKPLRFELVIYPSLQDVQPRAVIALWKA 210 (508)
Q Consensus 168 ~~i~~~Ll~-~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~~ 210 (508)
.+++++|++ .|++++..+..+.++++.++..++...+..|+..
T Consensus 229 ~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ 272 (276)
T 4hbd_A 229 KEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSR 272 (276)
T ss_dssp HHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence 999999999 8999999999999999999999887776665543
No 71
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A
Probab=99.95 E-value=7.4e-28 Score=216.06 Aligned_cols=143 Identities=25% Similarity=0.296 Sum_probs=132.3
Q ss_pred cccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcH
Q 010517 10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89 (508)
Q Consensus 10 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tp 89 (508)
.+.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+||
T Consensus 29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~ 105 (172)
T 3v30_A 29 VNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTG-GYTDIVGLLLERDVDINIY--DWNGGTP 105 (172)
T ss_dssp GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHTTTCCTTCC--CTTSCCH
T ss_pred ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchhhcccCCCHHHHHHHC-CCHHHHHHHHHcCCCCCCC--CCCCCCH
Confidence 577899999999999999999999999999999999999999999999998 9999999999999999998 8899999
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCH
Q 010517 90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSF 157 (508)
Q Consensus 90 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tp 157 (508)
||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++++++. .++..|.||
T Consensus 106 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~--~~~~~~~~p 171 (172)
T 3v30_A 106 LLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLF--QSNLVPADP 171 (172)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHS--CC-------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHh--cccCCCCCC
Confidence 999999999999999999999999999999999999999999999999999999988 788888876
No 72
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1
Probab=99.95 E-value=9.9e-28 Score=206.79 Aligned_cols=134 Identities=18% Similarity=0.225 Sum_probs=129.7
Q ss_pred CCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCC-
Q 010517 40 GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDD- 118 (508)
Q Consensus 40 g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~- 118 (508)
+++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+|+. |+.+++++|+++|++++.+|..
T Consensus 2 ~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~ 77 (136)
T 1d9s_A 2 SPGIHMLGGSSDAGLATAAAR-GQVETVRQLLEAGADPNAL--NRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPAT 77 (136)
T ss_dssp CCCCSCCCCCCSCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTT
T ss_pred CCCccCCCCCCccHHHHHHHc-CCHHHHHHHHHcCCCcCCc--CCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCC
Confidence 578999999999999999998 9999999999999999998 8899999999999 9999999999999999999999
Q ss_pred CCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCC
Q 010517 119 CHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 180 (508)
Q Consensus 119 g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~ 180 (508)
|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|+|
T Consensus 78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~~~~Ll~~Gad 136 (136)
T 1d9s_A 78 LTRPVHDAAREGFLDTLVVLHRAGARLD--VCDAWGRLPVD-LAEEQGHRDIARYLHAATGD 136 (136)
T ss_dssp TBCHHHHHHHHTCHHHHHHHHHTCCCCC--CCSSSSSCHHH-HHHHHTCHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHcCCHHHHHHHHHcCCCCC--ccCCCCCCHHH-HHHHcCCHHHHHHHHHcCCC
Confidence 9999999999999999999999999999 99999999999 99999999999999999875
No 73
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Probab=99.95 E-value=3.6e-27 Score=215.60 Aligned_cols=161 Identities=21% Similarity=0.153 Sum_probs=152.2
Q ss_pred CCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcH
Q 010517 43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTA 122 (508)
Q Consensus 43 ~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tp 122 (508)
+|.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+|+..|+.+++++|+++|++++..|..|.||
T Consensus 28 ~n~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~ 104 (192)
T 2rfm_A 28 RNYRDSYNRTPLMVACML-GMENAIDKLVENFDKLEDK--DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTP 104 (192)
T ss_dssp HTCCCTTCCCHHHHHHHH-TCGGGHHHHHHHHCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCH
T ss_pred HhCcCCCCCCHHHHHHHc-CCHHHHHHHHHhccccccc--cccCccHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Confidence 467899999999999998 9999999999999999988 8899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChH
Q 010517 123 LGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPR 202 (508)
Q Consensus 123 Lh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~ 202 (508)
||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++++..+..+.++++.++..++..
T Consensus 105 L~~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~ 181 (192)
T 2rfm_A 105 LMWSIIFGYSEMSYFLLEHGANVN--DRNLEGETPLI-VASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQE 181 (192)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCSS--CCCTTCCCHHH-HHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHH
Confidence 999999999999999999999999 89999999999 999999999999999999999999989999999999888876
Q ss_pred HHHHHHH
Q 010517 203 AVIALWK 209 (508)
Q Consensus 203 ~v~~l~~ 209 (508)
.+..|+.
T Consensus 182 ~v~~Ll~ 188 (192)
T 2rfm_A 182 VIKIFTE 188 (192)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6655443
No 74
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.94 E-value=9.1e-27 Score=200.73 Aligned_cols=127 Identities=28% Similarity=0.360 Sum_probs=119.3
Q ss_pred ccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHH
Q 010517 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92 (508)
Q Consensus 13 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~ 92 (508)
....|.|+||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+
T Consensus 10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--d~~g~t~L~~ 86 (136)
T 2jab_A 10 HGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAH-GHLEIVEVLLKNGADVNAV--DAIGFTPLHL 86 (136)
T ss_dssp --CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHH
T ss_pred ccccccHHHHHHHHhCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcC--CCCCCCHHHH
Confidence 356789999999999999999999999999999999999999999998 9999999999999999988 8899999999
Q ss_pred HHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcC
Q 010517 93 AAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI 142 (508)
Q Consensus 93 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g 142 (508)
|+..|+.+++++|+++|++++..|..|.||||+|+..|+.+++++|+++|
T Consensus 87 A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 87 AAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999876
No 75
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.94 E-value=3.2e-28 Score=221.63 Aligned_cols=158 Identities=15% Similarity=0.059 Sum_probs=142.3
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCCccC-CCCChHHHHHHHhCCCH----HHHHHHHHcCCCCcccCCCCCCCcHH
Q 010517 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMD-KEGKTPLIVACMDSGLI----NVAKTLIELGANINAYRPGGRGGTPL 90 (508)
Q Consensus 16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d-~~G~TpLh~Aa~~~g~~----~~v~~Ll~~ga~~n~~~~d~~g~tpL 90 (508)
.+.++|+.|++.|+++.++.+++.+. +.++ ..|+||||+|+.. |+. +++++|+++|+++|.+ |..|+|||
T Consensus 5 ~~~~~l~~Aa~~g~~~~~~~l~~~~~--~~~~~~~g~T~Lh~A~~~-~~~~~~~~iv~~Ll~~Gadvn~~--d~~g~TpL 79 (186)
T 3t8k_A 5 SEYRTVSAAAMLGTYEDFLELFEKGY--EDKESVLKSNILYDVLRN-NNDEARYKISMFLINKGADIKSR--TKEGTTLF 79 (186)
T ss_dssp HHCSSHHHHHHHSCHHHHHHHHHHSS--SCHHHHHTTTHHHHHTTC-SCHHHHHHHHHHHHHTTCCSSCC--CTTCCCTH
T ss_pred ccccHHHHHHHcCCHHHHHHHHhcCc--ccccccCCCCHHHHHHHc-CCcchHHHHHHHHHHCCCCCCCC--CCCCCcHH
Confidence 35688999999999999999999864 4555 7899999999987 764 5999999999999998 89999999
Q ss_pred HHHHHcCC------HHHHHHHHHCCCCccccCCCCC-cHHHHHHHhC-----CHHHHHHHHH-cCCcccccccccCCCCH
Q 010517 91 HHAAKRGL------EPTVRLLLSCGANALVRNDDCH-TALGVARIKG-----HINVVRAIES-HICYFCGWLREFYGPSF 157 (508)
Q Consensus 91 h~A~~~g~------~~~v~~Ll~~ga~~~~~d~~g~-TpLh~A~~~g-----~~~~v~~Ll~-~ga~~~~~~~~~~g~tp 157 (508)
|+|+..++ .+++++|+++|++++.+|..|. ||||+|+..+ +.+++++|++ +|++++ .+|..|+||
T Consensus 80 h~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~--~~d~~G~Tp 157 (186)
T 3t8k_A 80 FPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLL--IKDKWGLTA 157 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTT--CCCTTSCCH
T ss_pred HHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCc--ccCCCCCCH
Confidence 99999987 6889999999999999999999 9999999944 4679999999 999999 999999999
Q ss_pred HHHHHhhcCCHHHHHHhhhCCCCC
Q 010517 158 LEALAPQLMSRKIWVVVIPCGTAN 181 (508)
Q Consensus 158 L~~~A~~~~~~~i~~~Ll~~g~~~ 181 (508)
|| +|+..++.+++++|.....+.
T Consensus 158 L~-~A~~~~~~~~v~~L~~~~~~~ 180 (186)
T 3t8k_A 158 LE-FVKRCQKPIALKMMEDYIKKY 180 (186)
T ss_dssp HH-HHHTTTCHHHHHHHHHHHHHH
T ss_pred HH-HHHHcCCHHHHHHHHHHHHHH
Confidence 99 999999999999998766443
No 76
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.94 E-value=2.6e-26 Score=194.20 Aligned_cols=126 Identities=34% Similarity=0.514 Sum_probs=118.6
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHH
Q 010517 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAK 95 (508)
Q Consensus 16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~ 95 (508)
+|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. ++.+++++|+++|++++.+ |..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~l~~A~~ 77 (126)
T 1n0r_A 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAAR 77 (126)
T ss_dssp CCCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHH
T ss_pred CCccHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHc-CcHHHHHHHHHcCCCCccc--CCCCCcHHHHHHH
Confidence 588999999999999999999999999999999999999999998 9999999999999999988 7899999999999
Q ss_pred cCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCc
Q 010517 96 RGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY 144 (508)
Q Consensus 96 ~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~ 144 (508)
.|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 78 NGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred cChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999999999999999999875
No 77
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Probab=99.94 E-value=2.8e-26 Score=205.35 Aligned_cols=133 Identities=26% Similarity=0.345 Sum_probs=127.3
Q ss_pred ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86 (508)
Q Consensus 7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g 86 (508)
+.+++.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|
T Consensus 37 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g 113 (169)
T 2y1l_E 37 GADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALF-GHLEIVEVLLKNGADVNAN--DMEG 113 (169)
T ss_dssp TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTS
T ss_pred CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCC
Confidence 356677899999999999999999999999999999999999999999999998 9999999999999999998 8899
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcC
Q 010517 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHI 142 (508)
Q Consensus 87 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~g 142 (508)
+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|++.|
T Consensus 114 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G 169 (169)
T 2y1l_E 114 HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN 169 (169)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999875
No 78
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A
Probab=99.94 E-value=1.2e-26 Score=205.69 Aligned_cols=134 Identities=28% Similarity=0.341 Sum_probs=126.9
Q ss_pred ccCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517 7 SMNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRG 86 (508)
Q Consensus 7 ~~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g 86 (508)
..+.+.+|..|.||||+|+. |+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|
T Consensus 28 ~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g 103 (162)
T 1ihb_A 28 NVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDLKDRTGFAVIHDAARA-GFLDTLQTLLEFQADVNIE--DNEG 103 (162)
T ss_dssp CCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTS
T ss_pred CCCccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCC
Confidence 45667889999999999999 999999999999999999999999999999998 9999999999999999998 8899
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCC-ccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCc
Q 010517 87 GTPLHHAAKRGLEPTVRLLLSCGAN-ALVRNDDCHTALGVARIKGHINVVRAIESHICY 144 (508)
Q Consensus 87 ~tpLh~A~~~g~~~~v~~Ll~~ga~-~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~ 144 (508)
+||||+|+..|+.+++++|+++|++ ++..|..|.||||+|+..|+.+++++|+++|++
T Consensus 104 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd 162 (162)
T 1ihb_A 104 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162 (162)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred CCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence 9999999999999999999999998 699999999999999999999999999999985
No 79
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A
Probab=99.94 E-value=1.9e-26 Score=208.40 Aligned_cols=136 Identities=21% Similarity=0.206 Sum_probs=131.9
Q ss_pred cCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCC
Q 010517 8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87 (508)
Q Consensus 8 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~ 87 (508)
...+.+|..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+
T Consensus 30 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--d~~g~ 106 (179)
T 3f6q_A 30 NDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASH-GHRDIVQKLLQYKADINAV--NEHGN 106 (179)
T ss_dssp SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSC
T ss_pred ccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCC
Confidence 35677899999999999999999999999999999999999999999999998 9999999999999999998 88999
Q ss_pred cHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCccc
Q 010517 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC 146 (508)
Q Consensus 88 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~ 146 (508)
||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|++.|++++
T Consensus 107 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~ 165 (179)
T 3f6q_A 107 VPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLN 165 (179)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCS
T ss_pred CHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 99999999999999999999999999999999999999999999999999999999998
No 80
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Probab=99.94 E-value=4.8e-26 Score=203.14 Aligned_cols=156 Identities=19% Similarity=0.085 Sum_probs=147.8
Q ss_pred CCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHH
Q 010517 49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI 128 (508)
Q Consensus 49 ~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~ 128 (508)
.|.||||+|+.. |+.+++++|++.|++++.+ |..|+||||+|+..|+.+++++|+++|++++..|..|.||||+|+.
T Consensus 2 ~~~t~L~~A~~~-g~~~~v~~ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~ 78 (167)
T 3v31_A 2 ANSLSVHQLAAQ-GEMLYLATRIEQENVINHT--DEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACS 78 (167)
T ss_dssp TTCCCHHHHHHT-TCHHHHHHHHHHSSCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHH
T ss_pred CCcchHHHHHHC-CCHHHHHHHHHcCCCcCCC--CCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHH
Confidence 589999999998 9999999999999999988 8899999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHH
Q 010517 129 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW 208 (508)
Q Consensus 129 ~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~ 208 (508)
.|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++++..+..+.++++.+...++...+..|+
T Consensus 79 ~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~ 155 (167)
T 3v31_A 79 KGYTDIVKMLLDCGVDVN--EYDWNGGTPLL-YAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIE 155 (167)
T ss_dssp HTCHHHHHHHHHHTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred cCCHHHHHHHHHCCCCCC--cCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999 89999999999 999999999999999999999999989999999999988877766655
Q ss_pred Hh
Q 010517 209 KA 210 (508)
Q Consensus 209 ~~ 210 (508)
..
T Consensus 156 ~~ 157 (167)
T 3v31_A 156 SH 157 (167)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 81
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A
Probab=99.93 E-value=3.1e-26 Score=202.22 Aligned_cols=143 Identities=19% Similarity=0.167 Sum_probs=121.0
Q ss_pred CCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCc-
Q 010517 43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHT- 121 (508)
Q Consensus 43 ~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~T- 121 (508)
.+..+..|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+|+ .|+.+++++|+++|++++.+|..|.|
T Consensus 5 ~~~~~~~~~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~tt 80 (156)
T 1bi7_B 5 AGSSMEPSADWLATAAAR-GRVEEVRALLEAGANPNAP--NSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTR 80 (156)
T ss_dssp -----CCSTTHHHHHHHH-TCHHHHHHHHTTTCCTTCC--CSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCC
T ss_pred ccCCCccchHHHHHHHHc-CCHHHHHHHHHcCCCCCCC--CCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcH
Confidence 345678899999999998 9999999999999999998 889999999985 99999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccc
Q 010517 122 ALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVI 192 (508)
Q Consensus 122 pLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l 192 (508)
|||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++++..+..+.++.
T Consensus 81 pL~~A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~ 148 (156)
T 1bi7_B 81 PVHDAAREGFLDTLVVLHRAGARLD--VRDAWGRLPVD-LAEELGHRDVARYLRAAAGGTRGSNHARIDAA 148 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCSS--CCCTTCCCHHH-HHHHHTCHHHHHHHSSCC--------------
T ss_pred HHHHHHHCCCHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHhCHHHHHHHHHHcCCCCCccCcCcCccc
Confidence 9999999999999999999999999 99999999999 99999999999999999999988776555443
No 82
>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1
Probab=99.93 E-value=2.3e-25 Score=195.79 Aligned_cols=148 Identities=21% Similarity=0.221 Sum_probs=139.7
Q ss_pred CChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHh
Q 010517 50 GKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIK 129 (508)
Q Consensus 50 G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~ 129 (508)
+.|+||+|+.. |+.+++++|+++|++++. |..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..
T Consensus 2 ~~~~L~~A~~~-g~~~~v~~Ll~~g~~~~~---~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 77 (153)
T 1awc_B 2 LGKKLLEAARA-GQDDEVRILMANGAPFTT---DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASE 77 (153)
T ss_dssp HHHHHHHHHHH-TCHHHHHHHHHHTCCCCC---CTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHH
T ss_pred ccHHHHHHHHc-CCHHHHHHHHHcCCCCCc---CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHc
Confidence 46899999998 999999999999998873 78999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccChHHH
Q 010517 130 GHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAV 204 (508)
Q Consensus 130 g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v 204 (508)
|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++++..+..+.++++.+...++...+
T Consensus 78 ~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~ 149 (153)
T 1awc_B 78 GHANIVEVLLKHGADVN--AKDMLKMTALH-WATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLA 149 (153)
T ss_dssp TCHHHHHHHHTTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHH
T ss_pred ChHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHH
Confidence 99999999999999999 89999999999 99999999999999999999999998999999999888775443
No 83
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=99.93 E-value=2.2e-25 Score=196.44 Aligned_cols=129 Identities=26% Similarity=0.378 Sum_probs=124.1
Q ss_pred cCcccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCC
Q 010517 8 MNQHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGG 87 (508)
Q Consensus 8 ~~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~ 87 (508)
.+.+.+|..|.||||+ +..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+
T Consensus 27 ~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--~~~g~ 102 (156)
T 1bd8_A 27 VHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNVQDTSGTSPVHDAART-GFLDTLKVLVEHGADVNVP--DGTGA 102 (156)
T ss_dssp CCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCSCCC--CTTSC
T ss_pred cCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHc-CcHHHHHHHHHcCCCCCCc--CCCCC
Confidence 3677889999999999 999999999999999999999999999999999998 9999999999999999998 88999
Q ss_pred cHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHc
Q 010517 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141 (508)
Q Consensus 88 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ 141 (508)
||||+|+..|+.+++++|++. ++++.+|..|.||||+|+..|+.+++++|+++
T Consensus 103 t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~ 155 (156)
T 1bd8_A 103 LPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH 155 (156)
T ss_dssp CHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred cHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence 999999999999999999999 99999999999999999999999999999875
No 84
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B
Probab=99.93 E-value=2.7e-26 Score=217.62 Aligned_cols=148 Identities=21% Similarity=0.196 Sum_probs=134.7
Q ss_pred cCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHH
Q 010517 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA 93 (508)
Q Consensus 14 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A 93 (508)
+..|.|+||+|+..|+.++|++||++|++++.+|..|.||||+|+.. |+.+++++|+++|+++|.+ |..|+||||+|
T Consensus 34 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~--d~~g~tpL~~A 110 (239)
T 1ycs_B 34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCA-GHTEIVKFLVQFGVNVNAA--DSDGWTPLHCA 110 (239)
T ss_dssp ---CHHHHHHHHHHTCHHHHHHHTSTTSSCCCCCTTSCCHHHHHHHH-TCHHHHHHHHHHTCCTTCC--CTTCCCHHHHH
T ss_pred CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHH
Confidence 46789999999999999999999999999999999999999999998 9999999999999999998 88999999999
Q ss_pred HHcCCHHHHHHHHHCCCCccccCCCCC-cHHHHH--HHhCCHHHHHHHHHcCCccccccc---------ccCCCCHHHHH
Q 010517 94 AKRGLEPTVRLLLSCGANALVRNDDCH-TALGVA--RIKGHINVVRAIESHICYFCGWLR---------EFYGPSFLEAL 161 (508)
Q Consensus 94 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~-TpLh~A--~~~g~~~~v~~Ll~~ga~~~~~~~---------~~~g~tpL~~~ 161 (508)
+..|+.+++++|+++|++++..+..|. ||||+| +..|+.+++++|++.|++++ .. +..+.++++ +
T Consensus 111 ~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~--~~~~~~~~al~d~~~~~~~e-L 187 (239)
T 1ycs_B 111 ASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG--IMNKGVIYALWDYEPQNDDE-L 187 (239)
T ss_dssp HHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTT--TTGGGEEEESSCBCCSSTTB-C
T ss_pred HHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhccc--ccccceEEEEeccCCCCCCc-c
Confidence 999999999999999999999998887 999999 78899999999999999887 43 566778877 6
Q ss_pred HhhcCC
Q 010517 162 APQLMS 167 (508)
Q Consensus 162 A~~~~~ 167 (508)
+...|.
T Consensus 188 a~~~G~ 193 (239)
T 1ycs_B 188 PMKEGD 193 (239)
T ss_dssp CBCSSC
T ss_pred cccCCC
Confidence 665554
No 85
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.93 E-value=6.4e-26 Score=195.50 Aligned_cols=131 Identities=22% Similarity=0.265 Sum_probs=71.9
Q ss_pred CCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCC
Q 010517 40 GASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDC 119 (508)
Q Consensus 40 g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g 119 (508)
|+|+ .+|.+|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+|+..|+.+++++|+++|++++.+|..|
T Consensus 1 G~d~-~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g 76 (137)
T 3c5r_A 1 GIDP-FTNHRGETLLHIASIK-GDIPSVEYLLQNGSDPNVK--DHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQN 76 (137)
T ss_dssp ---C-CCCTTCCCHHHHHHHH-TCHHHHHHHHHTTCCSCCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGG
T ss_pred CCCC-CcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcC--CCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCC
Confidence 3444 4455555555555555 5555555555555555555 4555555555555555555555555555555555555
Q ss_pred CcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhC
Q 010517 120 HTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPC 177 (508)
Q Consensus 120 ~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~ 177 (508)
.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..+..+++++|.+.
T Consensus 77 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~tpl~-~A~~~~~~~~l~~l~~~ 131 (137)
T 3c5r_A 77 DSPLHDAAKNGHVDIVKLLLSYGASRN--AVNIFGLRPVD-YTDDESMKSLLLLPEKN 131 (137)
T ss_dssp CCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTSCCGGG-GCCCHHHHHHHSCC---
T ss_pred CCHHHHHHHcCCHHHHHHHHHcCCCCC--CCCCCCCCHHH-HHhhccHHHHHhhcccc
Confidence 555555555555555555555555555 55555555555 55555555555544443
No 86
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1
Probab=99.93 E-value=2.3e-26 Score=198.31 Aligned_cols=129 Identities=28% Similarity=0.321 Sum_probs=120.2
Q ss_pred cccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHH
Q 010517 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH 91 (508)
Q Consensus 12 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh 91 (508)
.+|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||
T Consensus 5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--~~~g~t~L~ 81 (137)
T 3c5r_A 5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNH-GHLKVVELLLQHKALVNTT--GYQNDSPLH 81 (137)
T ss_dssp CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CGGGCCHHH
T ss_pred CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHc-CCHHHHHHHHHcCCcccCc--CCCCCCHHH
Confidence 4688999999999999999999999999999999999999999999998 9999999999999999998 889999999
Q ss_pred HHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCC
Q 010517 92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHIC 143 (508)
Q Consensus 92 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga 143 (508)
+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.+++++|.+.+.
T Consensus 82 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~ 133 (137)
T 3c5r_A 82 DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNES 133 (137)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC-----
T ss_pred HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhcccccc
Confidence 9999999999999999999999999999999999999999999988876654
No 87
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C
Probab=99.93 E-value=2.5e-25 Score=191.67 Aligned_cols=127 Identities=20% Similarity=0.236 Sum_probs=120.5
Q ss_pred cCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHH
Q 010517 46 MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125 (508)
Q Consensus 46 ~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~ 125 (508)
....|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+|+..|+.+++++|+++|++++..|..|.||||+
T Consensus 10 ~~~~~~t~l~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~ 86 (136)
T 2jab_A 10 HGSDLGKKLLEAARA-GQDDEVRILMANGADVNAK--DEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHL 86 (136)
T ss_dssp --CHHHHHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHH
T ss_pred ccccccHHHHHHHHh-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHH
Confidence 345689999999998 9999999999999999998 8899999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCC
Q 010517 126 ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCG 178 (508)
Q Consensus 126 A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g 178 (508)
|+..|+.+++++|+++|++++ .+|.+|.|||| +|+..++.+++++|+++|
T Consensus 87 A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~tpl~-~A~~~~~~~~~~~Ll~~G 136 (136)
T 2jab_A 87 AAFIGHLEIAEVLLKHGADVN--AQDKFGKTAFD-ISIGNGNEDLAEILQKLN 136 (136)
T ss_dssp HHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHC-
T ss_pred HHHcCCHHHHHHHHHcCCCCc--CcCCCCCCHHH-HHHHCCCHHHHHHHHHcC
Confidence 999999999999999999999 89999999999 999999999999999876
No 88
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1
Probab=99.93 E-value=6.4e-25 Score=185.55 Aligned_cols=126 Identities=32% Similarity=0.465 Sum_probs=122.3
Q ss_pred CCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHH
Q 010517 49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI 128 (508)
Q Consensus 49 ~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~ 128 (508)
+|+||||+|+.. |+.+++++|+++|++++.+ |..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~-~~~~~v~~Ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~ 77 (126)
T 1n0r_A 1 NGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77 (126)
T ss_dssp CCCCHHHHHHHH-TCHHHHHHHHHHTCCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCccHHHHHHHc-CcHHHHHHHHHcCCCCCCc--CCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Confidence 589999999998 9999999999999999988 8899999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCC
Q 010517 129 KGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 180 (508)
Q Consensus 129 ~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~ 180 (508)
.|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++
T Consensus 78 ~~~~~~~~~Ll~~g~~~~--~~~~~g~t~l~-~A~~~~~~~~~~~Ll~~Gad 126 (126)
T 1n0r_A 78 NGHLEVVKLLLEAGADVN--AKDKNGRTPLH-LAARNGHLEVVKLLLEAGAY 126 (126)
T ss_dssp TTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHTCC
T ss_pred cChHHHHHHHHHcCCCCc--ccCCCCCCHHH-HHHHcCcHHHHHHHHHcCCC
Confidence 999999999999999999 89999999999 99999999999999999975
No 89
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.93 E-value=2.3e-25 Score=202.14 Aligned_cols=143 Identities=21% Similarity=0.174 Sum_probs=131.9
Q ss_pred cccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHH
Q 010517 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH 91 (508)
Q Consensus 12 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh 91 (508)
..+..|.||||+|+..|+.+++++||+ |++++.+|..|.||||+|+.. |+.+++++|+++|+++|.++ +..|+||||
T Consensus 39 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~~-~~~g~tpL~ 115 (183)
T 3deo_A 39 DVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHRD-MRGGLTALH 115 (183)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTCCCTTSCCHHHHHHHH-TCHHHHHHHHHTTCCTTCCC-SSSSCCHHH
T ss_pred cCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCCcCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcCC-CCCCCCHHH
Confidence 446789999999999999999999999 999999999999999999998 99999999999999999883 389999999
Q ss_pred HHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHH
Q 010517 92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW 171 (508)
Q Consensus 92 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~ 171 (508)
+|+..|+.+++++|+++|++++.+|..|.||||+|+..++ ...+.++|+ +++..|+.+++
T Consensus 116 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~-------------------~~~~~~~l~-~a~~~~~~~i~ 175 (183)
T 3deo_A 116 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILK-------------------TTPKGNPMQ-FGRRIGLEKVI 175 (183)
T ss_dssp HHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHH-------------------TCCCCSHHH-HHHHHHHHHHH
T ss_pred HHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhcc-------------------CcccccHHH-HHHHcCHHHHH
Confidence 9999999999999999999999999999999999987422 245789999 99999999999
Q ss_pred HHhhhC
Q 010517 172 VVVIPC 177 (508)
Q Consensus 172 ~~Ll~~ 177 (508)
++|.++
T Consensus 176 ~~L~~~ 181 (183)
T 3deo_A 176 NVLEGQ 181 (183)
T ss_dssp HHHHTC
T ss_pred HHHHHh
Confidence 998765
No 90
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=99.92 E-value=7.8e-25 Score=194.85 Aligned_cols=149 Identities=21% Similarity=0.199 Sum_probs=137.5
Q ss_pred cCCCCChHHHHHHHhCCCHHHHHHHHHc-CCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHH
Q 010517 46 MDKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALG 124 (508)
Q Consensus 46 ~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~-ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh 124 (508)
.|.+|.|+||+|+.. |+.++++.|++. +.+++.. +..|+||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 4 ~~~~~~~~l~~A~~~-g~~~~v~~ll~~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~ 80 (165)
T 3twr_A 4 GNSEADRQLLEAAKA-GDVETVKKLCTVQSVNCRDI--EGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLH 80 (165)
T ss_dssp --CHHHHHHHHHHHH-TCHHHHHHHCCTTTTTCCCT--TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred CcchhhHHHHHHHHh-CCHHHHHHHHHcCCCCcccc--ccCCCCHHHHHHHcChHHHHHHHHhcCCCCCccCCCCCCHHH
Confidence 467889999999998 999999999985 5566655 788999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccCh
Q 010517 125 VARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQP 201 (508)
Q Consensus 125 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~ 201 (508)
+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..++.+++++|+++|++++..+..+.++++.+.+ ++.
T Consensus 81 ~A~~~~~~~~v~~Ll~~g~~~~--~~~~~g~t~L~-~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~ 153 (165)
T 3twr_A 81 NACSYGHYEVAELLVKHGAVVN--VADLWKFTPLH-EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDT 153 (165)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCH
T ss_pred HHHHcCcHHHHHHHHhCCCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CCh
Confidence 9999999999999999999999 89999999999 9999999999999999999999999999999999766 443
No 91
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.92 E-value=1.4e-25 Score=213.33 Aligned_cols=146 Identities=21% Similarity=0.181 Sum_probs=134.3
Q ss_pred cccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHH
Q 010517 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLH 91 (508)
Q Consensus 12 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh 91 (508)
..+..|.||||+|+..|+.++|++||+ |+++|.+|..|.||||+|+.. |+.++|++|+++|+++|.++ +..|+||||
T Consensus 40 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~ga~~~~~~-~~~g~t~L~ 116 (244)
T 3ui2_A 40 DVVSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGL-GSDKCVRLLAEAGADLDHRD-MRGGLTALH 116 (244)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTCBCTTSCBHHHHHHHH-TCHHHHHHHHHTTCCTTCCC-SSSCCCHHH
T ss_pred ccccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCCcCCCCCCHHHHHHHC-CCHHHHHHHHHcCCCCCcCC-CCCCCCHHH
Confidence 345689999999999999999999999 999999999999999999998 99999999999999999983 388999999
Q ss_pred HHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHH
Q 010517 92 HAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIW 171 (508)
Q Consensus 92 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~ 171 (508)
+|+..|+.+++++|+++|++++.+|..|.||||+|+.. .....+.|||| +|+..|+.+++
T Consensus 117 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~-------------------~~~~~~~~~l~-~a~~~g~~~iv 176 (244)
T 3ui2_A 117 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI-------------------LKTTPKGNPMQ-FGRRIGLEKVI 176 (244)
T ss_dssp HHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH-------------------HTTCCCSSHHH-HHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHH-------------------HhccCCCCHHH-HHHHcChHHHH
Confidence 99999999999999999999999999999999999862 22356899999 99999999999
Q ss_pred HHhhhCCCC
Q 010517 172 VVVIPCGTA 180 (508)
Q Consensus 172 ~~Ll~~g~~ 180 (508)
++|++++.+
T Consensus 177 ~~L~~~~~~ 185 (244)
T 3ui2_A 177 NVLEGQVFE 185 (244)
T ss_dssp HHHHHHHEE
T ss_pred HHHHHhccc
Confidence 999987654
No 92
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.92 E-value=6.7e-26 Score=212.18 Aligned_cols=139 Identities=24% Similarity=0.286 Sum_probs=110.9
Q ss_pred cccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHc-CCCCcccCCCCCCCc
Q 010517 10 QHQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIEL-GANINAYRPGGRGGT 88 (508)
Q Consensus 10 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~-ga~~n~~~~d~~g~t 88 (508)
++.++..|.|+||+|+..|+.++|++||+.|++++.+|..|.||||+|+.. |+.++|++|+++ |++++.+ |..|+|
T Consensus 66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~~g~~~~~~--d~~g~t 142 (222)
T 3ehr_A 66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHG-GHKDIVEMLFTQPNIELNQQ--NKLGDT 142 (222)
T ss_dssp HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHTTSTTCCCCCC--CTTSCC
T ss_pred ccccccccccccccccccCcHHHHHHHHhCCCCccccCCCCCCHHHHHHHc-CCHHHHHHHHcCCCCCcccc--CCCCCC
Confidence 345677888999999999999999999999999999999999999999987 899999999988 8999988 788999
Q ss_pred HHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccC
Q 010517 89 PLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFY 153 (508)
Q Consensus 89 pLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~ 153 (508)
|||+|+..|+.+++++|+++|++++.+|..|.||||+|+..++.++++.|++.++... .++..
T Consensus 143 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~--~~~~~ 205 (222)
T 3ehr_A 143 ALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRT--LSNAE 205 (222)
T ss_dssp HHHHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred HHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhh--ccchh
Confidence 9999999999999999999999999999999999999999999999999998888776 44443
No 93
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=99.92 E-value=4.6e-26 Score=207.32 Aligned_cols=134 Identities=20% Similarity=0.211 Sum_probs=121.6
Q ss_pred ccccc-CCchHHHHHHHHcCCH----HHHHHHHHcCCCCCccCCCCChHHHHHHHhCCC------HHHHHHHHHcCCCCc
Q 010517 10 QHQQR-QSKDELLYQWVIAGDV----DAIRALRSQGASLEWMDKEGKTPLIVACMDSGL------INVAKTLIELGANIN 78 (508)
Q Consensus 10 ~~~~~-~~g~t~L~~Aa~~g~~----~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~------~~~v~~Ll~~ga~~n 78 (508)
.+.++ ..|+||||+|+..|+. ++|++||++|+++|.+|.+|+||||+|+.. ++ .+++++|+++|+++|
T Consensus 30 ~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~-~~~~~~~~~~iv~~Ll~~Gadin 108 (186)
T 3t8k_A 30 YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQG-GGNDITGTTELCKIFLEKGADIT 108 (186)
T ss_dssp SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSCCCTTCCCTHHHHHHH-CTTCHHHHHHHHHHHHHTTCCSS
T ss_pred cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc-CCcchhhHHHHHHHHHHCCCCCC
Confidence 34445 7799999999999985 599999999999999999999999999998 65 689999999999999
Q ss_pred ccCCCCCCC-cHHHHHHHcC-----CHHHHHHHHH-CCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCccc
Q 010517 79 AYRPGGRGG-TPLHHAAKRG-----LEPTVRLLLS-CGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC 146 (508)
Q Consensus 79 ~~~~d~~g~-tpLh~A~~~g-----~~~~v~~Ll~-~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~ 146 (508)
.+ |..|+ ||||+|+..+ +.+++++|++ +|++++.+|..|.||||+|+..|+.++|++|++...+++
T Consensus 109 ~~--d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~ 181 (186)
T 3t8k_A 109 AL--YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYN 181 (186)
T ss_dssp SC--BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHT
T ss_pred cc--CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99 88999 9999999954 4569999999 999999999999999999999999999999998876655
No 94
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.92 E-value=3.9e-25 Score=186.88 Aligned_cols=113 Identities=28% Similarity=0.335 Sum_probs=100.3
Q ss_pred cCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHH
Q 010517 14 RQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHA 93 (508)
Q Consensus 14 ~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A 93 (508)
+..|.|+||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+|
T Consensus 4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~~~~--d~~g~tpL~~A 80 (123)
T 3aaa_C 4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADC-GQLEILEFLLLKGADINAP--DKHHITPLLSA 80 (123)
T ss_dssp ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCCTTSSCHHHHHHHT-TCHHHHHHHHTTTCCTTCC--CTTSCCHHHHH
T ss_pred ccccchHHHHHHHcCCHHHHHHHHHcCCCcCccCCCCCcHHHHHHHc-CCHHHHHHHHHcCCCCCcC--CCCCCCHHHHH
Confidence 56788999999999999999999999999999999999999999987 9999999999999999988 78899999999
Q ss_pred HHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHh
Q 010517 94 AKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIK 129 (508)
Q Consensus 94 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~ 129 (508)
+..|+.+++++|+++|++++.+|..|.||||+|...
T Consensus 81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~ 116 (123)
T 3aaa_C 81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQ 116 (123)
T ss_dssp HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCCH
T ss_pred HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCCH
Confidence 999999999999999999999999999999998443
No 95
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.91 E-value=1.3e-24 Score=213.15 Aligned_cols=142 Identities=20% Similarity=0.163 Sum_probs=122.3
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCCc------cCCCCChHHHHHHHh--CCCHHHHHHHHHcCCCCcccCCCCCCC
Q 010517 16 SKDELLYQWVIAGDVDAIRALRSQGASLEW------MDKEGKTPLIVACMD--SGLINVAKTLIELGANINAYRPGGRGG 87 (508)
Q Consensus 16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~------~d~~G~TpLh~Aa~~--~g~~~~v~~Ll~~ga~~n~~~~d~~g~ 87 (508)
.+.++|+.|+..|+.+.|+.|++.|++++. .|..|.||||+|+.. .|+.+++++|+++|+++|.+ |..|+
T Consensus 150 ~~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~--d~~G~ 227 (301)
T 2b0o_E 150 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAK--AADGN 227 (301)
T ss_dssp -CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCC--CTTCC
T ss_pred chHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCC--CCCCC
Confidence 356789999999999999999999999988 688999999999984 27899999999999999998 88999
Q ss_pred cHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCC
Q 010517 88 TPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMS 167 (508)
Q Consensus 88 tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~ 167 (508)
||||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++ .|.|||| +|+..|+
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~--------~g~tpLh-~A~~~g~ 298 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG--------TFAFPLH-VDYSWVI 298 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH--------TTSSCCC--------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC--------CCCChhH-HHHhcCC
Confidence 999999999999999999999999999999999999999999999999999998875 4789999 8888776
Q ss_pred H
Q 010517 168 R 168 (508)
Q Consensus 168 ~ 168 (508)
.
T Consensus 299 ~ 299 (301)
T 2b0o_E 299 S 299 (301)
T ss_dssp -
T ss_pred c
Confidence 3
No 96
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A
Probab=99.90 E-value=1e-23 Score=178.09 Aligned_cols=114 Identities=22% Similarity=0.231 Sum_probs=105.8
Q ss_pred cCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHH
Q 010517 46 MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125 (508)
Q Consensus 46 ~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~ 125 (508)
.+..|.||||+|+.. |+.+++++|++.|++++.+ |..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+
T Consensus 3 ~~~~~~~~l~~A~~~-~~~~~v~~ll~~~~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~ 79 (123)
T 3aaa_C 3 LGSMCDKEFMWALKN-GDLDEVKDYVAKGEDVNRT--LEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLS 79 (123)
T ss_dssp ----CHHHHHHHHHT-TCHHHHHHHHHTTCCTTSC--CTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHH
T ss_pred cccccchHHHHHHHc-CCHHHHHHHHHcCCCcCcc--CCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHH
Confidence 356789999999998 9999999999999999998 8899999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhc
Q 010517 126 ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQL 165 (508)
Q Consensus 126 A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~ 165 (508)
|+..|+.+++++|+++|++++ .+|.+|.|||| +|...
T Consensus 80 A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~ 116 (123)
T 3aaa_C 80 AVYEGHVSCVKLLLSKGADKT--VKGPDGLTAFE-ATDNQ 116 (123)
T ss_dssp HHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HCCCH
T ss_pred HHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HhCCH
Confidence 999999999999999999999 99999999999 78443
No 97
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.90 E-value=1.8e-23 Score=210.02 Aligned_cols=147 Identities=21% Similarity=0.297 Sum_probs=121.3
Q ss_pred ccCCchHHHHHHHHc-CCHHHHHHHHHcCCCCCccC--CCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcH
Q 010517 13 QRQSKDELLYQWVIA-GDVDAIRALRSQGASLEWMD--KEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTP 89 (508)
Q Consensus 13 ~~~~g~t~L~~Aa~~-g~~~~v~~Ll~~g~~~~~~d--~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tp 89 (508)
.+..+.|+||+|+.. |++++|++||++|+++|..| ..|.||||+|+.. |+.+++++|+++|+++|.+ |..|+||
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~-g~~~iv~~LL~~Gadvn~~--d~~G~Tp 271 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAA-NSLLACEFLLQNGANVNQA--DSAGRGP 271 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCH
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHC-CCHHHHHHHHHcCCCCCCC--CCCCCCH
Confidence 345678999999999 99999999999999999998 8999999999997 9999999999999999998 8899999
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCccc-ccccccCCCCHHHHHHh
Q 010517 90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC-GWLREFYGPSFLEALAP 163 (508)
Q Consensus 90 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~-~~~~~~~g~tpL~~~A~ 163 (508)
||+|+..|+.+++++||++|++++.+|..|.||||+|+..|+.+++++|++.+.... ....+..+.|+++ +..
T Consensus 272 Lh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l~-i~~ 345 (368)
T 3jue_A 272 LHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLD-IFR 345 (368)
T ss_dssp HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC---------------------
T ss_pred HHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHHH-HHH
Confidence 999999999999999999999999999999999999999999999999998874422 1145667888888 443
No 98
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A
Probab=99.90 E-value=4.2e-24 Score=199.90 Aligned_cols=134 Identities=17% Similarity=0.146 Sum_probs=117.2
Q ss_pred cCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHC-CCCccccCCCCCcHHH
Q 010517 46 MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSC-GANALVRNDDCHTALG 124 (508)
Q Consensus 46 ~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~-ga~~~~~d~~g~TpLh 124 (508)
.+..|.||||+|+.. |+.+++++|++.|++++.+ |..|+||||+|+..|+.++|++|++. |++++.+|..|.||||
T Consensus 69 ~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~~~~~--~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~ 145 (222)
T 3ehr_A 69 QAESIDNPLHEAAKR-GNLSWLRECLDNRVGVNGL--DKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALH 145 (222)
T ss_dssp HEEEESCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHH
T ss_pred ccccccccccccccc-CcHHHHHHHHhCCCCcccc--CCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHH
Confidence 466789999999998 9999999999999999998 88999999999999999999999999 9999999999999999
Q ss_pred HHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCC
Q 010517 125 VARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKP 185 (508)
Q Consensus 125 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~ 185 (508)
+|+..|+.+++++|+++|++++ .+|.+|.|||| +|+..++.++++.|+..++.....+
T Consensus 146 ~A~~~~~~~~v~~Ll~~ga~~~--~~~~~g~t~l~-~A~~~~~~~~l~~l~~~~~~~~~~~ 203 (222)
T 3ehr_A 146 AAAWKGYADIVQLLLAKGARTD--LRNIEKKLAFD-MATNAACASLLKKKQGTDAVRTLSN 203 (222)
T ss_dssp HHHHHTCHHHHHHHHHHTCCSC--CCCTTSCCHHH-HCCSHHHHHHHC-------------
T ss_pred HHHHcCCHHHHHHHHHcCCCCc--cccCCCCCHHH-HhcchhHHHHHHHHhccchhhhccc
Confidence 9999999999999999999999 99999999999 9999999999999999998775444
No 99
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.90 E-value=1.3e-25 Score=226.38 Aligned_cols=158 Identities=14% Similarity=0.041 Sum_probs=135.8
Q ss_pred cccCCchHHHHHHHHcCCHHHHHHHHHcCCCC---CccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCC---cccCCCCC
Q 010517 12 QQRQSKDELLYQWVIAGDVDAIRALRSQGASL---EWMDKEGKTPLIVACMDSGLINVAKTLIELGANI---NAYRPGGR 85 (508)
Q Consensus 12 ~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~---~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~---n~~~~d~~ 85 (508)
.++.++.||||+|++.|+.++|++|+++|+.. +..|..|.||||+|+.. |+.++|++|+++|+++ +.. +..
T Consensus 87 ~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~-G~~eiv~~Ll~~gad~~~~~i~--~~~ 163 (376)
T 2aja_A 87 KKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN-GHLHVLNRLCELAPTEIMAMIQ--AEN 163 (376)
T ss_dssp HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT-TCHHHHHHHHHSCTTTHHHHHS--HHH
T ss_pred HcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHc-CCHHHHHHHHhCCCCccccccC--CCC
Confidence 45677889999999999999999999999832 24456788999999998 9999999999999863 332 222
Q ss_pred CCcHHHHHHHcCCHHHHHHHHHCCCCccc--cCCCCCcHHHHHH-HhCCHHHHHHHHHcCCcccccccccCCCCHHHHHH
Q 010517 86 GGTPLHHAAKRGLEPTVRLLLSCGANALV--RNDDCHTALGVAR-IKGHINVVRAIESHICYFCGWLREFYGPSFLEALA 162 (508)
Q Consensus 86 g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~--~d~~g~TpLh~A~-~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A 162 (508)
+||||+|+..|+.++|++|+++|++++. .|..|.||||+|+ ..|+.++|++|++.|++ |.|||| .|
T Consensus 164 -~TpLh~Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~---------~~taL~-~A 232 (376)
T 2aja_A 164 -YHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM---------LAYAEI-HE 232 (376)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH---------HHHHHH-CT
T ss_pred -CCHHHHHHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc---------cchHHH-HH
Confidence 8999999999999999999999999887 8889999999999 99999999999997642 779999 99
Q ss_pred hhcCCHHHHHHhhhCCCCCCC
Q 010517 163 PQLMSRKIWVVVIPCGTANPS 183 (508)
Q Consensus 163 ~~~~~~~i~~~Ll~~g~~~~~ 183 (508)
+..|+.+++++|+++|++.+.
T Consensus 233 a~~g~~evv~lL~~~ga~~~~ 253 (376)
T 2aja_A 233 FEYGEKYVNPFIARHVNRLKE 253 (376)
T ss_dssp TTTTTTTHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHhcCccccc
Confidence 999999999999999987643
No 100
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.89 E-value=4.1e-23 Score=216.89 Aligned_cols=128 Identities=21% Similarity=0.207 Sum_probs=119.2
Q ss_pred CchHHHHHHHHcCCHHHHHHHHHcCCCCCcc------CCCCChHHHHHHH---hCCCHHHHHHHHHcCCCCcccCCCCCC
Q 010517 16 SKDELLYQWVIAGDVDAIRALRSQGASLEWM------DKEGKTPLIVACM---DSGLINVAKTLIELGANINAYRPGGRG 86 (508)
Q Consensus 16 ~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~------d~~G~TpLh~Aa~---~~g~~~~v~~Ll~~ga~~n~~~~d~~g 86 (508)
...+.||.|+..|+.++|+.||++|+++|.. |..|.||||+|+. . |+.+++++|+++|+++|.+ |..|
T Consensus 131 ~~~~~L~~A~~~g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~-g~~~~v~~Ll~~ga~vn~~--d~~g 207 (497)
T 3lvq_E 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQ-ASLPLVDFIIQNGGHLDAK--AADG 207 (497)
T ss_dssp -CHHHHHHHHHHTCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCT-TTHHHHHHHHHHSCCTTCC--CSSS
T ss_pred ccHHHHHHHHhccCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhccc-ccHHHHHHHHHcCCCCCcc--CCCC
Confidence 3457899999999999999999999999988 8899999999976 6 9999999999999999998 8899
Q ss_pred CcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCccc
Q 010517 87 GTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICYFC 146 (508)
Q Consensus 87 ~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~ 146 (508)
+||||+|+..|+.++|++||++|++++.+|..|.||||+|+..|+.+++++|+++|++++
T Consensus 208 ~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~ 267 (497)
T 3lvq_E 208 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTF 267 (497)
T ss_dssp CCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTCC---
T ss_pred CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999988
No 101
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.88 E-value=3.4e-22 Score=193.63 Aligned_cols=125 Identities=19% Similarity=0.222 Sum_probs=84.8
Q ss_pred hHHHHHHHHcCCHHHHHHHHHcCCCCC------ccCCCCChHHHHHHHhC--CCHHHHHHHHHcCCCCcccCCCCCCCcH
Q 010517 18 DELLYQWVIAGDVDAIRALRSQGASLE------WMDKEGKTPLIVACMDS--GLINVAKTLIELGANINAYRPGGRGGTP 89 (508)
Q Consensus 18 ~t~L~~Aa~~g~~~~v~~Ll~~g~~~~------~~d~~G~TpLh~Aa~~~--g~~~~v~~Ll~~ga~~n~~~~d~~g~tp 89 (508)
.++|+.|+..|+.+.++.+++.|++++ ..|..|.||||+|+..+ |+.+++++|+++|+++|.+ |..|+||
T Consensus 131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~--d~~g~Tp 208 (278)
T 1dcq_A 131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQ--TGKGSTA 208 (278)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCC--CTTCCCH
T ss_pred hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCcccc--CCCCCCH
Confidence 456677777777777777777766633 33566777777777642 5667777777777777766 6667777
Q ss_pred HHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHcCCc
Q 010517 90 LHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESHICY 144 (508)
Q Consensus 90 Lh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~ 144 (508)
||+|+..|+.+++++|+++|++++.+|..|.||||+|+..|+.+++++|+++|++
T Consensus 209 Lh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~ 263 (278)
T 1dcq_A 209 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSG 263 (278)
T ss_dssp HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence 7777777777777777777777777777777777777777777777777666654
No 102
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A
Probab=99.88 E-value=7.8e-25 Score=198.66 Aligned_cols=115 Identities=27% Similarity=0.234 Sum_probs=108.4
Q ss_pred CCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccC-CCCCcHHHH
Q 010517 47 DKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRN-DDCHTALGV 125 (508)
Q Consensus 47 d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d-~~g~TpLh~ 125 (508)
+.+|.||||+|+.. |+.+++++|++ |+++|.+ |..|+||||+|+..|+.+++++|+++|++++.+| ..|.||||+
T Consensus 41 ~~~g~t~L~~A~~~-g~~~~v~~Ll~-~~~~~~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~ 116 (183)
T 3deo_A 41 VSEYETPWWTAARK-ADEQALSQLLE-DRDVDAV--DENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM 116 (183)
T ss_dssp HHHHHHHHHHHHHT-TCHHHHHHHTT-TSCTTCC--CTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred CCCCCCHHHHHHHc-CCHHHHHHHHh-cCCCCCc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence 56899999999998 99999999999 9999998 8899999999999999999999999999999998 899999999
Q ss_pred HHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCH
Q 010517 126 ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSR 168 (508)
Q Consensus 126 A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~ 168 (508)
|+..|+.+++++|+++|++++ .+|.+|.|||| +|+..++.
T Consensus 117 A~~~~~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~ 156 (183)
T 3deo_A 117 AAGYVRPEVVEALVELGADIE--VEDERGLTALE-LAREILKT 156 (183)
T ss_dssp HHHTTCHHHHHHHHHHTCCTT--CCCTTSCCHHH-HHHHHHHT
T ss_pred HHhcCcHHHHHHHHHcCCCCc--CCCCCCCCHHH-HHHHhccC
Confidence 999999999999999999999 99999999999 88765443
No 103
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1
Probab=99.87 E-value=1.4e-21 Score=189.27 Aligned_cols=167 Identities=13% Similarity=-0.008 Sum_probs=141.3
Q ss_pred ccccCCchHHHHHHHHcCCHHHHHHHHHcCCC-----CCc--------------------------cCCCCChHHHHHHH
Q 010517 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGAS-----LEW--------------------------MDKEGKTPLIVACM 59 (508)
Q Consensus 11 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~-----~~~--------------------------~d~~G~TpLh~Aa~ 59 (508)
-..|.-+.+.|+++...|+..+.+++...-.. ++. .+....++|+.|+.
T Consensus 60 ~~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~ 139 (278)
T 1dcq_A 60 LTLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVK 139 (278)
T ss_dssp TTTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHH
T ss_pred eecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhh
Confidence 34578889999999999998776665432110 000 00112468999999
Q ss_pred hCCCHHHHHHHHHcCCCCccc----CCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCH
Q 010517 60 DSGLINVAKTLIELGANINAY----RPGGRGGTPLHHAAKR---GLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI 132 (508)
Q Consensus 60 ~~g~~~~v~~Ll~~ga~~n~~----~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~ 132 (508)
. |+.+.++.|++.|++++.. ..|..|+||||+|+.. |+.+++++|+++|++++.+|..|.||||+|+..|+.
T Consensus 140 ~-~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~~ 218 (278)
T 1dcq_A 140 T-RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNA 218 (278)
T ss_dssp T-TCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCH
T ss_pred h-cccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCCH
Confidence 7 9999999999999996532 1267899999999999 899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCC
Q 010517 133 NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTAN 181 (508)
Q Consensus 133 ~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~ 181 (508)
+++++|+++|++++ .+|.+|.|||| +|+..|+.+++++|+++|++.
T Consensus 219 ~~v~~Ll~~gad~~--~~d~~g~tpL~-~A~~~~~~~~v~~Ll~~ga~~ 264 (278)
T 1dcq_A 219 ECLKLLLRGKASIE--IANESGETPLD-IAKRLKHEHCEELLTQALSGR 264 (278)
T ss_dssp HHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCCC--CccCCCCCHHH-HHHHcCCHHHHHHHHHcCCCC
Confidence 99999999999999 99999999999 999999999999999999864
No 104
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}
Probab=99.87 E-value=7.1e-22 Score=193.64 Aligned_cols=139 Identities=14% Similarity=0.098 Sum_probs=124.1
Q ss_pred CChHHHHHHHhCCCHHHHHHHHHcCCCCcc------cCCCCCCCcHHHHHHHc---CCHHHHHHHHHCCCCccccCCCCC
Q 010517 50 GKTPLIVACMDSGLINVAKTLIELGANINA------YRPGGRGGTPLHHAAKR---GLEPTVRLLLSCGANALVRNDDCH 120 (508)
Q Consensus 50 G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~------~~~d~~g~tpLh~A~~~---g~~~~v~~Ll~~ga~~~~~d~~g~ 120 (508)
+.++||.|+.. |+.+.++.|++.|++++. . +..|+||||+|+.. |+.+++++|+++|++++.+|..|.
T Consensus 151 ~~~~L~~A~~~-g~~~~v~~ll~~g~d~~~~~~~~~~--~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~ 227 (301)
T 2b0o_E 151 EPQRLWTAICN-RDLLSVLEAFANGQDFGQPLPGPDA--QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN 227 (301)
T ss_dssp CHHHHHHHHHT-TCHHHHHHHHHTTCCTTSCEECSSS--CSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred hHHHHhhhhhc-cCHHHHHHHHhcCCcccccCCCccc--CCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence 34679999998 999999999999999987 4 78999999999997 899999999999999999999999
Q ss_pred cHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccccccccccccC
Q 010517 121 TALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQ 200 (508)
Q Consensus 121 TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~ 200 (508)
||||+|+..|+.+++++|+++|++++ .+|.+|.|||| +|+..++.+++++|+++|++. +.++++.++..+.
T Consensus 228 TpLh~A~~~g~~~~v~~Ll~~gad~~--~~d~~G~TpL~-~A~~~~~~~iv~~Ll~~ga~~------g~tpLh~A~~~g~ 298 (301)
T 2b0o_E 228 TALHYAALYNQPDCLKLLLKGRALVG--TVNEAGETALD-IARKKHHKECEELLEQAQAGT------FAFPLHVDYSWVI 298 (301)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTCCCS--CCCTTSCCHHH-HHHHHTCHHHHHHHHHHHHHT------TSSCCC-------
T ss_pred CHHHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHhcCCC------CCChhHHHHhcCC
Confidence 99999999999999999999999999 99999999999 999999999999999999873 5677887776554
No 105
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.87 E-value=4.9e-22 Score=159.03 Aligned_cols=91 Identities=38% Similarity=0.558 Sum_probs=51.4
Q ss_pred chHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHc
Q 010517 17 KDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKR 96 (508)
Q Consensus 17 g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~ 96 (508)
|+||||+|+..|+.+++++|+++|+++|.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+|+..
T Consensus 2 g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~-~~~~~v~~Ll~~ga~~~~~--d~~g~t~l~~A~~~ 78 (93)
T 1n0q_A 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARN 78 (93)
T ss_dssp -CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHT
T ss_pred CCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHHHHc
Confidence 45555555555555555555555555555555555555555554 5555555555555555555 45555555555555
Q ss_pred CCHHHHHHHHHCCC
Q 010517 97 GLEPTVRLLLSCGA 110 (508)
Q Consensus 97 g~~~~v~~Ll~~ga 110 (508)
|+.+++++|+++|+
T Consensus 79 ~~~~~~~~Ll~~ga 92 (93)
T 1n0q_A 79 GHLEVVKLLLEAGA 92 (93)
T ss_dssp TCHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHcCC
Confidence 55555555555554
No 106
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1
Probab=99.87 E-value=9.6e-22 Score=157.32 Aligned_cols=93 Identities=39% Similarity=0.608 Sum_probs=85.8
Q ss_pred CCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHH
Q 010517 49 EGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARI 128 (508)
Q Consensus 49 ~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~ 128 (508)
+|+||||+|+.. |+.+++++|+++|+++|.+ |..|+||||+|+..|+.+++++|+++|++++.+|..|.||||+|+.
T Consensus 1 ~g~t~L~~A~~~-~~~~~v~~Ll~~g~~~n~~--d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~ 77 (93)
T 1n0q_A 1 NGRTPLHLAARN-GHLEVVKLLLEAGADVNAK--DKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR 77 (93)
T ss_dssp --CCHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred CCCcHHHHHHHc-CCHHHHHHHHHcCCCCccc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence 488999999998 9999999999999999988 8899999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHcCCc
Q 010517 129 KGHINVVRAIESHICY 144 (508)
Q Consensus 129 ~g~~~~v~~Ll~~ga~ 144 (508)
.|+.+++++|+++|++
T Consensus 78 ~~~~~~~~~Ll~~ga~ 93 (93)
T 1n0q_A 78 NGHLEVVKLLLEAGAY 93 (93)
T ss_dssp TTCHHHHHHHHHTTCC
T ss_pred cCCHHHHHHHHHcCCC
Confidence 9999999999999875
No 107
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.86 E-value=2.8e-22 Score=167.06 Aligned_cols=107 Identities=30% Similarity=0.410 Sum_probs=62.9
Q ss_pred ccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHH
Q 010517 13 QRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHH 92 (508)
Q Consensus 13 ~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~ 92 (508)
+|++|.|+||+|+..|+.+++++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+
T Consensus 5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--d~~g~tpl~~ 81 (115)
T 2l6b_A 5 GSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKN-GHAEIVKLLLAKGADVNAR--SKDGNTPEHL 81 (115)
T ss_dssp CSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTT-TCHHHHHHHTTTTCCTTCC--CTTCCCTTHH
T ss_pred cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHc-CcHHHHHHHHHcCCCCccc--CCCCCCHHHH
Confidence 355566666666666666666666666666666666666666666654 5566666666666666555 5555666666
Q ss_pred HHHcCCHHHHHHHHHCCCCccccCCCCCcH
Q 010517 93 AAKRGLEPTVRLLLSCGANALVRNDDCHTA 122 (508)
Q Consensus 93 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tp 122 (508)
|+..|+.+++++|+++|++++.++..|.||
T Consensus 82 A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~ 111 (115)
T 2l6b_A 82 AKKNGHHEIVKLLDAKGADVNARSWGSSHH 111 (115)
T ss_dssp HHTTTCHHHHHHHHTTSSSHHHHSCCCC--
T ss_pred HHHCCCHHHHHHHHHcCCCCCcCCcccccc
Confidence 666666666666666666666555555554
No 108
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1
Probab=99.86 E-value=7.2e-23 Score=206.30 Aligned_cols=174 Identities=11% Similarity=0.034 Sum_probs=143.7
Q ss_pred CchHHHHHHHH-cCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCccc-CCCCCCCcHHHHH
Q 010517 16 SKDELLYQWVI-AGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAY-RPGGRGGTPLHHA 93 (508)
Q Consensus 16 ~g~t~L~~Aa~-~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~-~~d~~g~tpLh~A 93 (508)
.+.+++++|.. .++.++++.|+++|.+. .||||+|+.. |+.++|++|+++|+..... +.+..|.||||+|
T Consensus 64 ~~ll~~~~a~~~~~~~~~~~~l~~~g~~~-------~T~Lh~Aa~~-G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~A 135 (376)
T 2aja_A 64 RQLLCLYYAHYNRNAKQLWSDAHKKGIKS-------EVICFVAAIT-GCSSALDTLCLLLTSDEIVKVIQAENYQAFRLA 135 (376)
T ss_dssp HHHHHHHHHHTTTTCTTHHHHHHHHTCCH-------HHHHHHHHHH-CCHHHHHHHTTC--CCSSCC--CHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHcCCCc-------CCHHHHHHHc-CCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHH
Confidence 35678888887 57889999999987764 4999999998 9999999999999833111 1145678999999
Q ss_pred HHcCCHHHHHHHHHCCCCc---cccCCCCCcHHHHHHHhCCHHHHHHHHHcCCcccccc--cccCCCCHHHHHHh-hcCC
Q 010517 94 AKRGLEPTVRLLLSCGANA---LVRNDDCHTALGVARIKGHINVVRAIESHICYFCGWL--REFYGPSFLEALAP-QLMS 167 (508)
Q Consensus 94 ~~~g~~~~v~~Ll~~ga~~---~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~--~~~~g~tpL~~~A~-~~~~ 167 (508)
+.+|+.++|++|+++|+++ +..+.+ .||||+|+..|+.++|++|+++|++++ . .|..|.|||| +|+ ..|+
T Consensus 136 a~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~Ll~~ga~~~--~~~~d~~g~TpL~-~Aa~~~G~ 211 (376)
T 2aja_A 136 AENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNRLCELAPTEA--TAMIQAENYYAFR-WAAVGRGH 211 (376)
T ss_dssp HHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHHHHHSCGGGH--HHHHHHHHHHHHH-HHHSTTCC
T ss_pred HHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHHHHHcCCccc--hhccCCCCCCHHH-HHHHHCCC
Confidence 9999999999999999862 333333 899999999999999999999999987 5 8889999999 999 9999
Q ss_pred HHHHHHhhhCCCCCCCCCccccccccccccccChHHHHHHH
Q 010517 168 RKIWVVVIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALW 208 (508)
Q Consensus 168 ~~i~~~Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~ 208 (508)
.+++++|+++|+ .+.++++.++..++...+..|.
T Consensus 212 ~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~ 245 (376)
T 2aja_A 212 HNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIA 245 (376)
T ss_dssp HHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHH
T ss_pred HHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHH
Confidence 999999999875 3788899999888877554443
No 109
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}
Probab=99.85 E-value=9.8e-22 Score=163.73 Aligned_cols=109 Identities=34% Similarity=0.499 Sum_probs=102.6
Q ss_pred ccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHH
Q 010517 45 WMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALG 124 (508)
Q Consensus 45 ~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh 124 (508)
.+|.+|.||||+|+.. |+.+++++|+++|++++.+ |..|+||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus 4 ~~d~~g~t~L~~A~~~-~~~~~~~~Ll~~g~~~~~~--d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~ 80 (115)
T 2l6b_A 4 WGSKDGNTPLHNAAKN-GHAEEVKKLLSKGADVNAR--SKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEH 80 (115)
T ss_dssp CCSCSSCCHHHHHHHH-TCHHHHHHHTTTTCCSSCC--CSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTH
T ss_pred ccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCCCCc--CCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence 5789999999999998 9999999999999999998 889999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHcCCcccccccccCCCCHH
Q 010517 125 VARIKGHINVVRAIESHICYFCGWLREFYGPSFL 158 (508)
Q Consensus 125 ~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL 158 (508)
+|+..|+.+++++|+++|++++ .++..|.+|-
T Consensus 81 ~A~~~~~~~~~~~Ll~~ga~~n--~~~~~~~~~~ 112 (115)
T 2l6b_A 81 LAKKNGHHEIVKLLDAKGADVN--ARSWGSSHHH 112 (115)
T ss_dssp HHHTTTCHHHHHHHHTTSSSHH--HHSCCCC---
T ss_pred HHHHCCCHHHHHHHHHcCCCCC--cCCccccccc
Confidence 9999999999999999999999 8899998874
No 110
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.85 E-value=4e-21 Score=201.67 Aligned_cols=137 Identities=15% Similarity=0.120 Sum_probs=119.3
Q ss_pred CChHHHHHHHhCCCHHHHHHHHHcCCCCccc----CCCCCCCcHHHHHHH---cCCHHHHHHHHHCCCCccccCCCCCcH
Q 010517 50 GKTPLIVACMDSGLINVAKTLIELGANINAY----RPGGRGGTPLHHAAK---RGLEPTVRLLLSCGANALVRNDDCHTA 122 (508)
Q Consensus 50 G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~----~~d~~g~tpLh~A~~---~g~~~~v~~Ll~~ga~~~~~d~~g~Tp 122 (508)
..+.||.|+.. |+.++|+.|++.|+++|.. +.|..|+||||+|+. .|+.++|++||++|++++.+|..|+||
T Consensus 132 ~~~~L~~A~~~-g~~~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~Tp 210 (497)
T 3lvq_E 132 EPQRLWTAICN-RDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTA 210 (497)
T ss_dssp CHHHHHHHHHH-TCHHHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCH
T ss_pred cHHHHHHHHhc-cCHHHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcH
Confidence 44789999998 9999999999999999865 226789999999976 899999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCCCCCCCccccc
Q 010517 123 LGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTANPSKPLRFEL 190 (508)
Q Consensus 123 Lh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~~~~~~~~~~~ 190 (508)
||+|+..|+.+++++|+++|++++ .+|.+|.|||| +|+..|+.+++++|+++|++.+..+.+..+
T Consensus 211 Lh~A~~~g~~~~v~~Ll~~ga~~~--~~d~~g~tpl~-~A~~~~~~~~~~~Ll~~ga~~~~~~~h~~~ 275 (497)
T 3lvq_E 211 LHYAALYNQPDCLKLLLKGRALVG--TVNEAGETALD-IARKKHHKECEELLEQAQAGTFAFPLHVDY 275 (497)
T ss_dssp HHHHTTTTCHHHHHHHHHTCCCCS--CCCTTCCCHHH-HHHHTTCHHHHHHHHHTCC-----------
T ss_pred HHHHHHcCCHHHHHHHHHcCCCCC--CcCCCCCCHHH-HHHHcCCHHHHHHHHHhCCCCCCCcceeec
Confidence 999999999999999999999999 99999999999 999999999999999999999877655433
No 111
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A
Probab=99.85 E-value=1.2e-21 Score=186.27 Aligned_cols=168 Identities=20% Similarity=0.085 Sum_probs=137.9
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHH
Q 010517 15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA 94 (508)
Q Consensus 15 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~ 94 (508)
..+.+++++++..|+.+.++.+...+.+ .+.+|.||||+|+.. |+.+++++|++ |+++|.+ |..|+||||+|+
T Consensus 13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~---~~~~g~t~L~~A~~~-g~~~~v~~Ll~-~~~~~~~--d~~g~t~L~~A~ 85 (244)
T 3ui2_A 13 GEGAMEYLIEWKDGHSPSWVPSSYIAAD---VVSEYETPWWTAARK-ADEQALSQLLE-DRDVDAV--DENGRTALLFVA 85 (244)
T ss_dssp TTTEEEEEEEESSCCCCEEEEGGGSCHH---HHHHHHHHHHHHHTT-TCHHHHHHTTT-TCCTTCB--CTTSCBHHHHHH
T ss_pred CCCccHHHHHHHcCCCcccccccccccc---cccCCCCHHHHHHHc-CCHHHHHHHHc-CCCCCCc--CCCCCCHHHHHH
Confidence 3455666666666766665555544433 345789999999997 99999999999 9999998 889999999999
Q ss_pred HcCCHHHHHHHHHCCCCccccC-CCCCcHHHHHHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHH
Q 010517 95 KRGLEPTVRLLLSCGANALVRN-DDCHTALGVARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV 173 (508)
Q Consensus 95 ~~g~~~~v~~Ll~~ga~~~~~d-~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~ 173 (508)
..|+.++|++|+++|++++.++ ..|.||||+|+..|+.+++++|+++|++++ .+|..|.|||| +|+..+.
T Consensus 86 ~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~--~~d~~g~t~l~-~A~~~~~------ 156 (244)
T 3ui2_A 86 GLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIE--VEDERGLTALE-LAREILK------ 156 (244)
T ss_dssp HHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTTCCTT--CCCTTCCCHHH-HHHHHHT------
T ss_pred HCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC--CCCCCCCcHHH-HHHHHHh------
Confidence 9999999999999999999998 889999999999999999999999999999 99999999999 7765222
Q ss_pred hhhCCCCCCCCCccccccccccccccChHHHHHHHH
Q 010517 174 VIPCGTANPSKPLRFELVIYPSLQDVQPRAVIALWK 209 (508)
Q Consensus 174 Ll~~g~~~~~~~~~~~~~l~~a~~~~~~~~v~~l~~ 209 (508)
. ....++++.+++.+....+..|..
T Consensus 157 ---~--------~~~~~~l~~a~~~g~~~iv~~L~~ 181 (244)
T 3ui2_A 157 ---T--------TPKGNPMQFGRRIGLEKVINVLEG 181 (244)
T ss_dssp ---T--------CCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ---c--------cCCCCHHHHHHHcChHHHHHHHHH
Confidence 1 135667777777776665554444
No 112
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A
Probab=99.84 E-value=6e-21 Score=191.57 Aligned_cols=132 Identities=19% Similarity=0.131 Sum_probs=121.2
Q ss_pred cCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHH
Q 010517 46 MDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGV 125 (508)
Q Consensus 46 ~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~ 125 (508)
.+..+.|+||+|+...|+.+++++|+++|+++|..+.+..|.||||+|+..|+.++|++|+++|++++.+|..|.||||+
T Consensus 195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~ 274 (368)
T 3jue_A 195 GSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHH 274 (368)
T ss_dssp --CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred ccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHH
Confidence 34456789999997448999999999999999998433899999999999999999999999999999999999999999
Q ss_pred HHHhCCHHHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHHhhhCCCC
Q 010517 126 ARIKGHINVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVVVIPCGTA 180 (508)
Q Consensus 126 A~~~g~~~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~Ll~~g~~ 180 (508)
|+..|+.+++++|+++|++++ .+|.+|.|||| +|+..++.+++++|+..+..
T Consensus 275 A~~~g~~~~v~~LL~~Gad~~--~~d~~G~TpL~-~A~~~g~~~iv~lLl~~~~~ 326 (368)
T 3jue_A 275 ATILGHTGLACLFLKRGADLG--ARDSEGRDPLT-IAMETANADIVTLLRLAKMR 326 (368)
T ss_dssp HHHHTCHHHHHHHHHTTCCTT--CCCTTSCCHHH-HHHHTTCHHHHHHHHHHHC-
T ss_pred HHHcCcHHHHHHHHHCcCCCC--CcCCCCCCHHH-HHHHCCCHHHHHHHHHcCCC
Confidence 999999999999999999999 99999999999 99999999999999988753
No 113
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.79 E-value=6.5e-19 Score=145.52 Aligned_cols=92 Identities=30% Similarity=0.414 Sum_probs=60.0
Q ss_pred ccccCCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHH
Q 010517 11 HQQRQSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPL 90 (508)
Q Consensus 11 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpL 90 (508)
...|.+|.|+||+|+..|+.++|++|+++|++++.+|..|.||||+|+.. |+.+++++|+++|++++.+ |..|+|||
T Consensus 18 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~-~~~~~v~~Ll~~ga~~~~~--d~~g~tpl 94 (110)
T 2zgd_A 18 SHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARN-GHLEVVKLLLEAGADVXAQ--DKFGKTAF 94 (110)
T ss_dssp ----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHT-TCHHHHHHHHHTTCCTTCC--CTTSCCHH
T ss_pred cccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHc-CCHHHHHHHHHcCCCcccc--ccCCCcHH
Confidence 34466666666666666666666666666666666666666666666665 6666666666666666666 56666666
Q ss_pred HHHHHcCCHHHHHHH
Q 010517 91 HHAAKRGLEPTVRLL 105 (508)
Q Consensus 91 h~A~~~g~~~~v~~L 105 (508)
|+|+..|+.+++++|
T Consensus 95 ~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 95 DISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHTCHHHHHHH
T ss_pred HHHHHcCCHHHHHHh
Confidence 666666666666655
No 114
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Probab=99.77 E-value=1.2e-18 Score=143.92 Aligned_cols=93 Identities=27% Similarity=0.369 Sum_probs=82.8
Q ss_pred CCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcH
Q 010517 43 LEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTA 122 (508)
Q Consensus 43 ~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~Tp 122 (508)
+...|.+|.|+||+|+.. |+.+++++|+++|++++.+ |..|+||||+|+..|+.+++++|+++|++++.+|..|.||
T Consensus 17 ~~~~~~~g~t~L~~A~~~-g~~~~v~~Ll~~g~~i~~~--d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp 93 (110)
T 2zgd_A 17 GSHMGSDLGKKLLEAARA-GQDDEVRILMANGADVAAK--DKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA 93 (110)
T ss_dssp -----CCHHHHHHHHHHH-TCHHHHHHHHHTTCCTTCC--CTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred ccccCCccchHHHHHHHc-CCHHHHHHHHHcCCCCCcc--CCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcH
Confidence 345678899999999998 9999999999999999988 7899999999999999999999999999999999999999
Q ss_pred HHHHHHhCCHHHHHHH
Q 010517 123 LGVARIKGHINVVRAI 138 (508)
Q Consensus 123 Lh~A~~~g~~~~v~~L 138 (508)
||+|+..|+.+++++|
T Consensus 94 l~~A~~~~~~~~~~~L 109 (110)
T 2zgd_A 94 FDISIDNGNEDLAEIL 109 (110)
T ss_dssp HHHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHh
Confidence 9999999999999887
No 115
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=99.49 E-value=9.6e-15 Score=106.74 Aligned_cols=56 Identities=27% Similarity=0.790 Sum_probs=50.6
Q ss_pred CccccccccccCCceEEe--CCCCchhhHHhHHHHhccCCccccccccccceeEeeeC
Q 010517 453 SSSSCVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 508 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i~~~ 508 (508)
....|.||++.+.+++++ ||||.++|..|+.+++..++.||+||++|.++++||.+
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~s 63 (63)
T 2vje_B 6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFIA 63 (63)
T ss_dssp GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEEC
T ss_pred cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEecC
Confidence 346999999999999888 99999669999999997777899999999999999975
No 116
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=99.49 E-value=9.5e-15 Score=107.12 Aligned_cols=56 Identities=34% Similarity=0.823 Sum_probs=51.4
Q ss_pred CccccccccccCCceEEe--CCCCchhhHHhHHHHhccCCccccccccccceeEeeeC
Q 010517 453 SSSSCVICWEAPVEGACV--PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 508 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i~~~ 508 (508)
++..|.||++.+.+++++ ||||.++|..|+..++..+..||+||++|.+++++|.+
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~ 64 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP 64 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence 446899999999999998 99999779999999998778899999999999999974
No 117
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=1.4e-13 Score=101.91 Aligned_cols=53 Identities=28% Similarity=0.734 Sum_probs=47.3
Q ss_pred CCCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEeee
Q 010517 451 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT 507 (508)
Q Consensus 451 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i~~ 507 (508)
..+...|.||++.+.+++++||||.++|..|+..++ .||+||++|..+++||.
T Consensus 12 ~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~CR~~i~~~~~i~~ 64 (68)
T 2ea5_A 12 EENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCRQFVQESFALSG 64 (68)
T ss_dssp CCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHCS----SCTTTCCCCCCEECCCS
T ss_pred CCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcCC----CCCCCCcchhceEEeec
Confidence 445679999999999999999999955999999765 49999999999999985
No 118
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=99.25 E-value=1.3e-12 Score=99.85 Aligned_cols=51 Identities=33% Similarity=0.978 Sum_probs=46.4
Q ss_pred CccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEeee
Q 010517 453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYT 507 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i~~ 507 (508)
+...|.||++.+.+++++||||.++|..|+..++. ||+||.+|..++++|.
T Consensus 17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~~----CP~Cr~~i~~~~~i~~ 67 (79)
T 2yho_A 17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQS----CPVCRSRVEHVQHVYL 67 (79)
T ss_dssp HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCSB----CTTTCCBCCEEEECBC
T ss_pred CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcCc----CCCCCchhhCeEEEEe
Confidence 34689999999999999999999559999998864 9999999999999985
No 119
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=99.20 E-value=3.4e-12 Score=96.52 Aligned_cols=52 Identities=29% Similarity=0.750 Sum_probs=46.2
Q ss_pred CccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEeeeC
Q 010517 453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 508 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i~~~ 508 (508)
++..|+||++.+.+++++||||..+|..|+..|. .||+||++|.+.+++|.+
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~S 74 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKILMS 74 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTCS----BCTTTCCBCSEEEECBC-
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcCc----cCCCcCcCccCcEEEeeC
Confidence 4468999999999999999999933999999884 599999999999999974
No 120
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=3.9e-12 Score=96.52 Aligned_cols=52 Identities=29% Similarity=0.783 Sum_probs=46.0
Q ss_pred CccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEeeeC
Q 010517 453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 508 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i~~~ 508 (508)
+...|+||++.+.+++++||||.++|..|+..+. .||+||++|...++||.+
T Consensus 24 ~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~S 75 (75)
T 2ecg_A 24 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKIFMS 75 (75)
T ss_dssp HHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHCS----BCTTTCCBCCCCCBCCCC
T ss_pred CCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCCC----CCccCCceecCcEEEecC
Confidence 3468999999999999999999933999998764 499999999999999975
No 121
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=4.9e-11 Score=89.45 Aligned_cols=49 Identities=27% Similarity=0.670 Sum_probs=44.0
Q ss_pred CCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010517 452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 501 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 501 (508)
.+...|+||++.+.+++.+||||.| |..|+..|...+..||+||..|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVF-CYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEE-EHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEccCCCHH-HHHHHHHHHHCCCcCcCcCchhCH
Confidence 3457999999999999999999999 999999988777889999999863
No 122
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.10 E-value=8.1e-11 Score=90.74 Aligned_cols=52 Identities=23% Similarity=0.491 Sum_probs=45.8
Q ss_pred CCCCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccce
Q 010517 450 DDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV 502 (508)
Q Consensus 450 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~ 502 (508)
+..+...|+||++.+.+++.++|||.| |..|+..|......||+||.++...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~~ 62 (81)
T 2csy_A 11 EEEIPFRCFICRQAFQNPVVTKCRHYF-CESCALEHFRATPRCYICDQPTGGI 62 (81)
T ss_dssp CCCCCSBCSSSCSBCCSEEECTTSCEE-EHHHHHHHHHHCSBCSSSCCBCCSC
T ss_pred cCCCCCCCcCCCchhcCeeEccCCCHh-HHHHHHHHHHCCCcCCCcCcccccc
Confidence 344557999999999999999999999 9999999988778899999998643
No 123
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.08 E-value=5.4e-11 Score=88.99 Aligned_cols=53 Identities=23% Similarity=0.729 Sum_probs=46.4
Q ss_pred CCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEee
Q 010517 452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 506 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i~ 506 (508)
.+...|+||++.+.+ +.+||||.| |..|+..|...+..||+||+++.....+|
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSF-CQKCIDKWSDRHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEE-CHHHHHHSSCCCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcc-cHHHHHHHHHCcCcCCCcCCcccCCCccc
Confidence 345799999999999 888999998 99999999887788999999998766554
No 124
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.06 E-value=1.2e-10 Score=87.61 Aligned_cols=52 Identities=23% Similarity=0.507 Sum_probs=45.6
Q ss_pred CCCCccccccccccCCceEEe-CCCCchhhHHhHHHHhccCCccccccccccce
Q 010517 450 DDGSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQV 502 (508)
Q Consensus 450 ~~~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~ 502 (508)
+..+...|+||++.+.+++.+ +|||.| |..|+..|...+..||+||+++...
T Consensus 11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 11 ELTPYILCSICKGYLIDATTITECLHTF-CKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp CCCGGGSCTTTSSCCSSCEECSSSCCEE-CHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred hcCCCCCCCCCChHHHCcCEECCCCCHH-HHHHHHHHHHcCCcCCCcCcccCcc
Confidence 344567999999999999887 999999 9999999987778899999998753
No 125
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.05 E-value=6e-11 Score=86.97 Aligned_cols=54 Identities=35% Similarity=0.771 Sum_probs=46.5
Q ss_pred CccccccccccCCce-------EEeCCCCchhhHHhHHHHhccCCcccccccccc--ceeEeee
Q 010517 453 SSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLYT 507 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~i~i~~ 507 (508)
+...|+||++...+. +.++|||.| |..|+..|...+..||+||+++. ++++||.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEE-EHHHHHHHHHHCSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCch-hHHHHHHHHHcCCCCCCCCccCCccceeeeeC
Confidence 346899999987664 788999999 99999999888889999999997 5777773
No 126
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.05 E-value=4.5e-11 Score=89.66 Aligned_cols=53 Identities=36% Similarity=0.803 Sum_probs=46.0
Q ss_pred CccccccccccCCce-------EEeCCCCchhhHHhHHHHhccCCcccccccccc--ceeEee
Q 010517 453 SSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY 506 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~i~i~ 506 (508)
+...|+||++...+. +.++|||.| |..|+..|...+..||+||+++. ++++||
T Consensus 9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 70 (71)
T 3ng2_A 9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 70 (71)
T ss_dssp TCCBCTTTCCBHHHHHTTTCCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCCCSCCCCC
T ss_pred CCCCCcccChhhhccccccCCeEeCCCCChH-hHHHHHHHHHcCCCCCCCCCccChhheeecc
Confidence 447999999997765 888999999 99999999888889999999997 466666
No 127
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.1e-10 Score=86.99 Aligned_cols=49 Identities=37% Similarity=0.826 Sum_probs=42.7
Q ss_pred CCccccccccccCCce-------EEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010517 452 GSSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 501 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 501 (508)
.+...|+||++.+.+. +.++|||.| |..|+..|...+..||+||.+|..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEE-EHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChh-cHHHHHHHHHcCCCCCCCCCccCc
Confidence 3457999999987765 888999999 999999998878899999998864
No 128
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.02 E-value=1.1e-10 Score=86.76 Aligned_cols=52 Identities=27% Similarity=0.786 Sum_probs=45.9
Q ss_pred ccccccccccCCc-eEEeCCCCchhhHHhHHHHhccCCccccccccccceeEee
Q 010517 454 SSSCVICWEAPVE-GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLY 506 (508)
Q Consensus 454 ~~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i~ 506 (508)
...|+||++...+ ++.+||||.| |..|+..|...+..||+||.++...++.+
T Consensus 5 ~~~C~IC~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~ 57 (68)
T 1chc_A 5 AERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVVHTI 57 (68)
T ss_dssp CCCCSSCCSCCCSCEEETTTTEEE-STTHHHHHHHHSCSTTTTCCCCCCEECCC
T ss_pred CCCCeeCCccccCCcEecCCCCee-HHHHHHHHHhCcCcCcCCChhhHhhhhcc
Confidence 3689999999988 4788999998 99999999887889999999998877654
No 129
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.00 E-value=3.1e-10 Score=84.49 Aligned_cols=53 Identities=23% Similarity=0.621 Sum_probs=44.5
Q ss_pred CCCccccccccccC---CceEEeCCCCchhhHHhHHHHhccCCccccccccccceeE
Q 010517 451 DGSSSSCVICWEAP---VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIR 504 (508)
Q Consensus 451 ~~~~~~C~iC~~~~---~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~ 504 (508)
......|+||++.+ ..++.+||||.| |..|+..|...+..||+||..|...+.
T Consensus 11 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 66 (69)
T 2kiz_A 11 EDTEEKCTICLSILEEGEDVRRLPCMHLF-HQVCVDQWLITNKKCPICRVDIEAQLP 66 (69)
T ss_dssp TTCCCSBTTTTBCCCSSSCEEECTTSCEE-EHHHHHHHHHHCSBCTTTCSBSCSCCC
T ss_pred CCCCCCCeeCCccccCCCcEEEeCCCCHH-HHHHHHHHHHcCCCCcCcCccccCcCC
Confidence 44557999998876 457888999999 999999998888889999999976543
No 130
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.99 E-value=4.1e-10 Score=84.85 Aligned_cols=49 Identities=27% Similarity=0.739 Sum_probs=42.8
Q ss_pred CCccccccccccCCceEEeCCCCchhhHHhHHHHhc---cCCccccccccccc
Q 010517 452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA---KKGDCPVCRTKINQ 501 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~---~~~~CP~Cr~~i~~ 501 (508)
.+...|+||++.+.+++.++|||.| |..|+..|.. ....||+||+++..
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEE-EHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChh-hHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 3457999999999999999999999 9999999986 34579999999863
No 131
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=98.98 E-value=1.9e-10 Score=98.28 Aligned_cols=49 Identities=33% Similarity=0.775 Sum_probs=44.5
Q ss_pred ccccccccccCCceEEeCCCCchhhHHhHHHHhccCCcccccccccccee
Q 010517 454 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVI 503 (508)
Q Consensus 454 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i 503 (508)
+..|+||++.+.+++.+||||.| |..|+..|...+..||+||.+|....
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSF-CSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEE-EHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred cCCCcccCcccCCceECCCCCCc-cHHHHHHHHHcCCcCCCCCCcCCCCC
Confidence 35799999999999999999999 99999999888889999999997643
No 132
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=3e-10 Score=85.85 Aligned_cols=54 Identities=26% Similarity=0.501 Sum_probs=44.3
Q ss_pred CCCccccccccccCC---ceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEe
Q 010517 451 DGSSSSCVICWEAPV---EGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL 505 (508)
Q Consensus 451 ~~~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i 505 (508)
......|.||++.+. ..+.+||||.| |..|+..|...+..||+||++|....++
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~ 68 (74)
T 2ep4_A 12 LNLHELCAVCLEDFKPRDELGICPCKHAF-HRKCLIKWLEVRKVCPLCNMPVLQLAQL 68 (74)
T ss_dssp CCCSCBCSSSCCBCCSSSCEEEETTTEEE-EHHHHHHHHHHCSBCTTTCCBCSSCCSC
T ss_pred CCCCCCCcCCCcccCCCCcEEEcCCCCEe-cHHHHHHHHHcCCcCCCcCccccccccc
Confidence 345579999999864 44556999999 9999999988888999999999876544
No 133
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.94 E-value=4.8e-10 Score=88.37 Aligned_cols=49 Identities=35% Similarity=0.719 Sum_probs=43.0
Q ss_pred CCccccccccccCCc---eEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010517 452 GSSSSCVICWEAPVE---GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 501 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~---~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 501 (508)
+++..|+||++.+.. ++.+||||.| |..|+..|...+..||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~F-h~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYF-HKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEE-EHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChH-HHHHHHHHHHcCCcCcCcCccCCC
Confidence 355799999998776 7788999999 999999999888899999998864
No 134
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=98.94 E-value=3.8e-10 Score=79.88 Aligned_cols=46 Identities=33% Similarity=0.738 Sum_probs=41.0
Q ss_pred ccccccccccCCc----eEEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010517 454 SSSCVICWEAPVE----GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 500 (508)
Q Consensus 454 ~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 500 (508)
...|+||++...+ ++.++|||.| |..|+..|...+..||+||++|.
T Consensus 5 ~~~C~IC~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 5 SSGCPICLEDIHTSRVVAHVLPCGHLL-HRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCSCTTTCCCCCTTTSCEEECTTSCEE-ETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCcCcccChhhcCCCcCeEecCCCCcc-cHHHHHHHHHcCCcCCCCCCcCC
Confidence 4689999998755 8889999999 99999999887788999999875
No 135
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=98.93 E-value=5e-10 Score=84.57 Aligned_cols=49 Identities=22% Similarity=0.613 Sum_probs=43.0
Q ss_pred CCCccccccccccCCceEEeC-CCCchhhHHhHHHHhccC--Ccccccccccc
Q 010517 451 DGSSSSCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAKK--GDCPVCRTKIN 500 (508)
Q Consensus 451 ~~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~--~~CP~Cr~~i~ 500 (508)
..++..|+||++.+.+++.++ |||.| |..|+..|...+ ..||+||+++.
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 12 IPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp SCGGGSCSSSCCCCTTCEECSSSCCEE-CTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCCCcCCChHHhCCeEcCCCCCHH-HHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 345579999999999999999 99999 999999998754 58999999864
No 136
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.92 E-value=4.7e-10 Score=85.74 Aligned_cols=50 Identities=30% Similarity=0.653 Sum_probs=41.8
Q ss_pred CCCccccccccccCC---ceEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010517 451 DGSSSSCVICWEAPV---EGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 501 (508)
Q Consensus 451 ~~~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 501 (508)
..+...|+||++.+. .++.++|||.| |..|+.+|...+..||+||+.+..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f-c~~Ci~~~~~~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLF-HDSCIVPWLEQHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEE-ETTTTHHHHTTTCSCTTTCCCCCC
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCee-cHHHHHHHHHcCCcCcCcCCccCC
Confidence 345579999988764 44667999999 999999998877899999999874
No 137
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.92 E-value=9.4e-10 Score=86.16 Aligned_cols=49 Identities=31% Similarity=0.651 Sum_probs=42.8
Q ss_pred CCCccccccccccCCc----eEEeCCCCchhhHHhHHHHhccC---Ccccccccccc
Q 010517 451 DGSSSSCVICWEAPVE----GACVPCGHMAGCMSCLSEIKAKK---GDCPVCRTKIN 500 (508)
Q Consensus 451 ~~~~~~C~iC~~~~~~----~~~~pCgH~~~C~~C~~~~~~~~---~~CP~Cr~~i~ 500 (508)
..+...|+||++.+.+ ++.++|||.| |..|+..|...+ ..||+||.++.
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 12 LREVLECPICMESFTEEQLRPKLLHCGHTI-CRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp CCSCCBCTTTCCBCCTTSSCEEECSSSCEE-EHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred ccCCCCCccCCccccccCCCeEECCCCChh-hHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 3455799999999988 9999999999 999999998764 68999999875
No 138
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.92 E-value=3.7e-10 Score=85.74 Aligned_cols=55 Identities=27% Similarity=0.655 Sum_probs=43.3
Q ss_pred CCCccccccccccC--CceEEeC--CCCchhhHHhHHHHhcc-CCccccccccccceeEee
Q 010517 451 DGSSSSCVICWEAP--VEGACVP--CGHMAGCMSCLSEIKAK-KGDCPVCRTKINQVIRLY 506 (508)
Q Consensus 451 ~~~~~~C~iC~~~~--~~~~~~p--CgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~~i~i~ 506 (508)
..++..|+||++.. .+.+++| |||.| |..|+.+++.. ...||.||+++.....+|
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~f-C~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~ 67 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQI-CRFCWHRIRTDENGLCPACRKPYPEDPAVY 67 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCC-CHHHHHHHTTSSCSBCTTTCCBCSSCSSCC
T ss_pred cccCCcCCccCccCccccccccccCCCCCc-CHHHHHHHHhcCCCCCCCCCCccCCCchhh
Confidence 34557999999976 4556666 99999 99999998753 467999999998655444
No 139
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.91 E-value=5.6e-10 Score=82.29 Aligned_cols=49 Identities=22% Similarity=0.563 Sum_probs=42.8
Q ss_pred CCccccccccccCCceEEeCCCCchhhHHhHHHHhc-cCCccccccccccc
Q 010517 452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQ 501 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~ 501 (508)
.+...|+||++...+++.++|||.| |..|+..|.. .+..||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCC-CHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhcCeeECCCCCHH-HHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 3457999999999999999999999 9999999984 45689999999864
No 140
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.91 E-value=7.4e-10 Score=87.58 Aligned_cols=50 Identities=22% Similarity=0.597 Sum_probs=43.1
Q ss_pred CCCCccccccccccCCceEEeC-CCCchhhHHhHHHHhccC--Ccccccccccc
Q 010517 450 DDGSSSSCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAKK--GDCPVCRTKIN 500 (508)
Q Consensus 450 ~~~~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~--~~CP~Cr~~i~ 500 (508)
...++..|+||++.+.+++.+| |||.| |..|+..+.... ..||+||.++.
T Consensus 9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 9 PIPDELLCLICKDIMTDAVVIPCCGNSY-CDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CCCTTTEETTTTEECSSCEECTTTCCEE-CHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCcCCCCCCCChhhcCceECCCCCCHH-HHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3455689999999999999999 99999 999999987643 47999999973
No 141
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.91 E-value=9.8e-10 Score=85.42 Aligned_cols=48 Identities=33% Similarity=0.737 Sum_probs=42.8
Q ss_pred CCccccccccccCCceEEeCCCCchhhHHhHHHHhcc------CCcccccccccc
Q 010517 452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK------KGDCPVCRTKIN 500 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~------~~~CP~Cr~~i~ 500 (508)
.+...|+||++.+.+++.++|||.| |..|+..|... ...||+||.++.
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSF-CRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCB-CHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred ccCCCCcCCChhhCcceeCCCCCHH-HHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 3457999999999999999999999 99999998776 568999999986
No 142
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.90 E-value=5e-10 Score=79.25 Aligned_cols=47 Identities=23% Similarity=0.677 Sum_probs=40.8
Q ss_pred CccccccccccCCc---eEEeC-CCCchhhHHhHHHHhccCCcccccccccc
Q 010517 453 SSSSCVICWEAPVE---GACVP-CGHMAGCMSCLSEIKAKKGDCPVCRTKIN 500 (508)
Q Consensus 453 ~~~~C~iC~~~~~~---~~~~p-CgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 500 (508)
+...|+||++...+ ++.+| |||.| |..|+..|...+..||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f-~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGF-HAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEE-CTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcc-cHHHHHHHHHcCCcCcCCCCEeE
Confidence 34689999999876 77777 99999 99999999888889999998763
No 143
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=6.5e-10 Score=84.22 Aligned_cols=48 Identities=23% Similarity=0.605 Sum_probs=41.2
Q ss_pred CccccccccccCCce---EEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010517 453 SSSSCVICWEAPVEG---ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 501 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~---~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 501 (508)
+...|+||++.+... +.+||||.| |..|+..|...+..||+||+.+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~f-h~~Ci~~w~~~~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEF-HAKCVDKWLKANRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEE-ETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHh-HHHHHHHHHHcCCcCcCcCCcCCC
Confidence 447899999886543 778999999 999999998888899999998864
No 144
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=98.87 E-value=1.4e-09 Score=83.04 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=43.8
Q ss_pred CCccccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCccccccccccc
Q 010517 452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ 501 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~ 501 (508)
.++..|+||++.+.+++.++|||.| |..|+.+|... +..||+||+++..
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~f-c~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQTY-ERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEEE-EHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCCEEcCCCCee-cHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 3457999999999999999999999 99999999876 6789999999863
No 145
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.86 E-value=3.8e-10 Score=86.51 Aligned_cols=49 Identities=31% Similarity=0.725 Sum_probs=42.7
Q ss_pred CCCccccccccccCCceEEeCCCCchhhHHhHHHHhcc-------CCcccccccccc
Q 010517 451 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-------KGDCPVCRTKIN 500 (508)
Q Consensus 451 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-------~~~CP~Cr~~i~ 500 (508)
..+...|+||++.+.+++.+||||.| |..|+..|... ...||+||.++.
T Consensus 9 ~~~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 9 VQEEVTCPICLELLTEPLSLDCGHSL-CRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCCCEETTTTEECSSCCCCSSSCCC-CHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cccCCCCcCCCcccCCeeECCCCCHH-HHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 34557999999999999999999999 99999988765 457999999986
No 146
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=1.1e-09 Score=85.14 Aligned_cols=48 Identities=33% Similarity=0.794 Sum_probs=42.6
Q ss_pred CCccccccccccCCceEEeCCCCchhhHHhHHHHhcc------CCcccccccccc
Q 010517 452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK------KGDCPVCRTKIN 500 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~------~~~CP~Cr~~i~ 500 (508)
.+...|+||++.+.+++.++|||.| |..|+..|... ...||+||..+.
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSF-CQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCB-CTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred cCCCCCCCCCcccCCceeCCCCCHH-HHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 3457999999999999999999999 99999998765 568999999987
No 147
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=98.82 E-value=1.2e-09 Score=87.71 Aligned_cols=47 Identities=26% Similarity=0.728 Sum_probs=43.0
Q ss_pred CccccccccccCCceEE-eCCCCchhhHHhHHHHhccC-Ccccccccccc
Q 010517 453 SSSSCVICWEAPVEGAC-VPCGHMAGCMSCLSEIKAKK-GDCPVCRTKIN 500 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~~~-~pCgH~~~C~~C~~~~~~~~-~~CP~Cr~~i~ 500 (508)
++..|+||++.+.+++. ++|||.| |..|+..|.... ..||+||.++.
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCCccCCccccCccccCCCCChh-hHHHHHHHHHHCcCCCCCCCCcCC
Confidence 45799999999999999 9999999 999999998876 68999999985
No 148
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.81 E-value=3.8e-09 Score=76.98 Aligned_cols=43 Identities=28% Similarity=0.773 Sum_probs=38.0
Q ss_pred CCccccccccccCCceEEeCCCCchhhHHhHHHHhcc---CCccccc
Q 010517 452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK---KGDCPVC 495 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~---~~~CP~C 495 (508)
.++..|+||++.+.+++.++|||.| |..|+.+|... +..||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNF-CLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEE-CHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcc-hHHHHHHHHHcCCCCCcCcCC
Confidence 4557999999999999999999999 99999999873 4579998
No 149
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.78 E-value=1.9e-09 Score=79.10 Aligned_cols=47 Identities=28% Similarity=0.676 Sum_probs=38.0
Q ss_pred ccccccccc-cCCce----EEeCCCCchhhHHhHHHHhcc-CCccccccccccc
Q 010517 454 SSSCVICWE-APVEG----ACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ 501 (508)
Q Consensus 454 ~~~C~iC~~-~~~~~----~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~ 501 (508)
+..|+||++ ...+. +.++|||.| |..|+.++... ...||+||+++..
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTL-CESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCE-EHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHh-HHHHHHHHHHcCCCcCCCCCCcccc
Confidence 368999999 54444 567999999 99999999554 4579999999963
No 150
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.77 E-value=2.3e-09 Score=89.75 Aligned_cols=48 Identities=25% Similarity=0.616 Sum_probs=42.5
Q ss_pred CccccccccccCCceEEeCCCCchhhHHhHHHHhccC-Cccccccccccc
Q 010517 453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ 501 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CP~Cr~~i~~ 501 (508)
+...|+||++.+.+++.+||||.| |..|+..|.... ..||+||.++..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNV-CKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcc-cHHHHHHHHhHCcCCCCCCCccCCC
Confidence 346899999999999999999999 999999988754 489999999965
No 151
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.77 E-value=3.5e-09 Score=75.71 Aligned_cols=43 Identities=33% Similarity=0.774 Sum_probs=37.3
Q ss_pred CCccccccccccCCceEEeCCCCchhhHHhHHHHhc---cCCccccc
Q 010517 452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA---KKGDCPVC 495 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~---~~~~CP~C 495 (508)
.+...|+||++.+.+++.++|||.| |..|+..|.. .+..||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNF-CKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCC-CHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCcc-CHHHHHHHHHhcCCCCCCCCC
Confidence 3457999999999999999999999 9999999943 34679998
No 152
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.76 E-value=1.3e-09 Score=106.70 Aligned_cols=52 Identities=29% Similarity=0.876 Sum_probs=45.6
Q ss_pred CccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccceeEeeeC
Q 010517 453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQVIRLYTV 508 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i~~~ 508 (508)
++..|+||++.+.+++++||||.++|..|+..+. .||+||.+|...++||.+
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~~----~CP~CR~~i~~~~~i~~s 345 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLR----KCPICRGIIKGTVRTFLS 345 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGCS----BCTTTCCBCCEEEECC--
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcCC----cCCCCCCCccCeEEeecC
Confidence 4479999999999999999999944999999884 499999999999999964
No 153
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.76 E-value=2.9e-09 Score=85.33 Aligned_cols=48 Identities=25% Similarity=0.620 Sum_probs=43.5
Q ss_pred CccccccccccCCceEEe-CCCCchhhHHhHHHHhccCCccccccccccc
Q 010517 453 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 501 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 501 (508)
+...|+||++.+.+++.+ +|||.| |..|+..|...+..||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNY-CSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHh-hHHHHHHHHHCCCCCCCCCCcCCh
Confidence 446899999999999988 999999 999999998877889999999873
No 154
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.75 E-value=4.7e-09 Score=85.58 Aligned_cols=48 Identities=21% Similarity=0.646 Sum_probs=43.9
Q ss_pred CccccccccccCCceEEe-CCCCchhhHHhHHHHhccCCccccccccccc
Q 010517 453 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 501 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 501 (508)
+...|+||++.+.+++.+ +|||.| |..|+..|...+..||+||..+..
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSF-CKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CcCCCccCChHHhCcCEeCCCCChh-hHHHHHHHHHhCCcCcCCCccccc
Confidence 457999999999999998 999999 999999998877889999999874
No 155
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.74 E-value=9.2e-09 Score=79.65 Aligned_cols=49 Identities=10% Similarity=0.015 Sum_probs=44.8
Q ss_pred CCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010517 452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 501 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 501 (508)
.++..|+||++.+.++|.++|||.| |..|+..++.....||+||.++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTVM-DRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCEE-CHHHHHHHHhcCCCCCCCcCCCCh
Confidence 4567999999999999999999999 999999999877899999999863
No 156
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.73 E-value=7.1e-10 Score=78.66 Aligned_cols=45 Identities=24% Similarity=0.540 Sum_probs=38.9
Q ss_pred CCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010517 452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 500 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 500 (508)
.+...|+||++.+.+++.+||||.| |..|+..+ ...||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~f-C~~Ci~~~---~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTL-CSGCLEAS---GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCS-BTTTCSSS---SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcc-cHHHHccC---CCCCCcCCcEee
Confidence 3457899999999999999999999 99998763 347999999886
No 157
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.72 E-value=6.6e-09 Score=102.22 Aligned_cols=50 Identities=34% Similarity=0.792 Sum_probs=45.2
Q ss_pred cccccccccCCceEEeCCCCchhhHHhHHHHhc-cCCccccccccccceeEe
Q 010517 455 SSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA-KKGDCPVCRTKINQVIRL 505 (508)
Q Consensus 455 ~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~~~i~i 505 (508)
..|+||++...+++.+||||.| |..|+..|.. ....||+||++|.....+
T Consensus 333 ~~C~ICle~~~~pv~lpCGH~F-C~~Ci~~wl~~~~~~CP~CR~~i~~~~~i 383 (389)
T 2y1n_A 333 QLCKICAENDKDVKIEPCGHLM-CTSCLTSWQESEGQGCPFCRCEIKGTEPI 383 (389)
T ss_dssp SBCTTTSSSBCCEEEETTCCEE-CHHHHHHHHHHTCSBCTTTCCBCCEEEEC
T ss_pred CCCCccCcCCCCeEEeCCCChh-hHHHHHHHHhcCCCCCCCCCCccCCceeE
Confidence 6899999999999999999999 9999999877 467899999999876655
No 158
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.69 E-value=2.6e-09 Score=88.21 Aligned_cols=48 Identities=35% Similarity=0.807 Sum_probs=42.5
Q ss_pred CccccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCccccccccccc
Q 010517 453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ 501 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~ 501 (508)
++..|+||++.+.+++.++|||.| |..|+..|... +..||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCNHTL-CKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTSCEE-CHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCceeEcCCCCHH-hHHHHHHHHhHCcCCCCCCCcccCc
Confidence 457999999999999999999999 99999998765 5689999999863
No 159
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.69 E-value=5.9e-09 Score=90.04 Aligned_cols=48 Identities=31% Similarity=0.630 Sum_probs=42.8
Q ss_pred CccccccccccCCceEEeCCCCchhhHHhHHHHhccCC-ccccccccccc
Q 010517 453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKINQ 501 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i~~ 501 (508)
+...|+||++.+.+++.+||||.| |..|+..+..... .||+||.++..
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNV-CKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEE-EHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCEeecCChhhcCCEEcCCCCch-hHHHHHHHHHhCCCcCCCCCccCCC
Confidence 446899999999999999999999 9999999987643 79999999874
No 160
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.67 E-value=2e-08 Score=79.89 Aligned_cols=49 Identities=10% Similarity=-0.002 Sum_probs=44.6
Q ss_pred CCccccccccccCCceEEeCCC-CchhhHHhHHHHhccCCccccccccccc
Q 010517 452 GSSSSCVICWEAPVEGACVPCG-HMAGCMSCLSEIKAKKGDCPVCRTKINQ 501 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~~~~~pCg-H~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 501 (508)
.++..|+||++.+.++|.++|| |.| |..|+.+++.....||+||.++..
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~htf-~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVTV-DRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeECCCCCeEE-CHHHHHHHHHhCCCCCCCCCCCCh
Confidence 3557999999999999999999 999 999999999877789999999863
No 161
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.67 E-value=1.2e-08 Score=84.52 Aligned_cols=49 Identities=31% Similarity=0.602 Sum_probs=43.3
Q ss_pred CCccccccccccCCceEEeCCCCchhhHHhHHHHhccC-Cccccccccccc
Q 010517 452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ 501 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CP~Cr~~i~~ 501 (508)
.+...|+||++.+.+++.++|||.| |..|+..|.... ..||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCeEECCcCChh-hHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 4557999999999999999999999 999999987664 489999999874
No 162
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1.1e-08 Score=78.41 Aligned_cols=47 Identities=21% Similarity=0.535 Sum_probs=38.4
Q ss_pred CccccccccccCCc--------------eEEe-CCCCchhhHHhHHHHhccCCcccccccccc
Q 010517 453 SSSSCVICWEAPVE--------------GACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 500 (508)
Q Consensus 453 ~~~~C~iC~~~~~~--------------~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 500 (508)
++..|.||++.+.+ ++.+ +|||.| |..|+.+|...+..||+||+++.
T Consensus 14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~CR~~~~ 75 (81)
T 2ecl_A 14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSF-HNCCMSLWVKQNNRCPLCQQDWV 75 (81)
T ss_dssp CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEE-EHHHHHHHTTTCCBCTTTCCBCC
T ss_pred CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCcc-ChHHHHHHHHhCCCCCCcCCCcc
Confidence 34578888887754 4444 599999 99999999888889999999875
No 163
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.66 E-value=1.8e-08 Score=80.51 Aligned_cols=49 Identities=10% Similarity=0.032 Sum_probs=44.8
Q ss_pred CCccccccccccCCceEEeCCCCchhhHHhHHHHhccCCccccccccccc
Q 010517 452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKINQ 501 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 501 (508)
.++..|+||++.+.++|.+||||.| |..|+..|+.....||+||.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGhtf-~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTIM-DRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEEE-EHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCEE-chHHHHHHHHcCCCCCCCCCCCCh
Confidence 4567999999999999999999999 999999999877889999999863
No 164
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=98.64 E-value=1e-08 Score=84.46 Aligned_cols=46 Identities=26% Similarity=0.616 Sum_probs=38.0
Q ss_pred cccccccccCCce------------------EEeCCCCchhhHHhHHHHhc-----cCCccccccccccc
Q 010517 455 SSCVICWEAPVEG------------------ACVPCGHMAGCMSCLSEIKA-----KKGDCPVCRTKINQ 501 (508)
Q Consensus 455 ~~C~iC~~~~~~~------------------~~~pCgH~~~C~~C~~~~~~-----~~~~CP~Cr~~i~~ 501 (508)
..|+||++.+... ..++|+|.| |..|+..|.. .+..||+||+.+..
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~F-h~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAF-HLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEE-CHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcc-cHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 5899999997543 378999999 9999999983 34689999998864
No 165
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.64 E-value=1e-08 Score=90.34 Aligned_cols=48 Identities=27% Similarity=0.619 Sum_probs=42.8
Q ss_pred CCccccccccccCCceEEe-CCCCchhhHHhHHHHhcc-CCcccccccccc
Q 010517 452 GSSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAK-KGDCPVCRTKIN 500 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 500 (508)
.+...|+||++.+.+++.+ +|||.| |..|+..|... +..||+||.++.
T Consensus 52 ~~~~~C~IC~~~~~~p~~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~ 101 (165)
T 2ckl_B 52 HSELMCPICLDMLKNTMTTKECLHRF-CADCIITALRSGNKECPTCRKKLV 101 (165)
T ss_dssp HHHHBCTTTSSBCSSEEEETTTCCEE-EHHHHHHHHHTTCCBCTTTCCBCC
T ss_pred CCCCCCcccChHhhCcCEeCCCCChh-HHHHHHHHHHhCcCCCCCCCCcCC
Confidence 3456999999999999988 999999 99999999876 668999999985
No 166
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.61 E-value=1.6e-08 Score=86.30 Aligned_cols=47 Identities=23% Similarity=0.511 Sum_probs=41.8
Q ss_pred CCccccccccccCCceEEeCCCCchhhHHhHHHHhccC-Cccccccccc
Q 010517 452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKI 499 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CP~Cr~~i 499 (508)
.+...|+||++.+.+++.++|||.| |..|+..|.... ..||+||.++
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~F-C~~Ci~~~~~~~~~~CP~Cr~~~ 76 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRY-CSFCLASILSSGPQNCAACVHEG 76 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHGGGSCEECHHHHHTT
T ss_pred CcCcCCCCCChhhcCcEECCCCCcc-CHHHHHHHHhcCCCCCCCCCCcc
Confidence 3557999999999999999999999 999999998754 4899999975
No 167
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.61 E-value=6.8e-09 Score=85.23 Aligned_cols=47 Identities=30% Similarity=0.762 Sum_probs=41.5
Q ss_pred ccccccccccCCceEEeCCCCchhhHHhHHHHhccC---Cccccccccccc
Q 010517 454 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK---GDCPVCRTKINQ 501 (508)
Q Consensus 454 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~---~~CP~Cr~~i~~ 501 (508)
...|+||++.+.+++.+||||.| |..|+..|...+ ..||+||.++..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIF-CKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCC-CSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCHH-HHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 46899999999999999999999 999999988754 379999999863
No 168
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.59 E-value=1.8e-08 Score=83.20 Aligned_cols=48 Identities=27% Similarity=0.529 Sum_probs=43.2
Q ss_pred CccccccccccCCceEEeCCCCchhhHHhHHHHhcc-CCccccccccccc
Q 010517 453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQ 501 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~ 501 (508)
+...|+||++.+.+++.++|||.| |..|+..|... ...||+||.++..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLF-CRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcc-cHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 446899999999999999999999 99999999876 5689999999864
No 169
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.58 E-value=2e-08 Score=85.03 Aligned_cols=53 Identities=36% Similarity=0.803 Sum_probs=45.1
Q ss_pred CccccccccccCCce-------EEeCCCCchhhHHhHHHHhccCCcccccccccc--ceeEee
Q 010517 453 SSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY 506 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~i~i~ 506 (508)
++..|+||++.+.+. +.++|||.| |..|+.+|...+..||+||+.+. ...++|
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~ 67 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 67 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTCCEE-EHHHHHHHHTTCSBCTTTCCBCTTTCEEECB
T ss_pred CCCCCcccChhhhCccccccCeEecCCCChh-hHHHHHHHHHhCCCCCCCCCcCccccccccc
Confidence 346899999998776 889999999 99999999888889999999997 344444
No 170
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.56 E-value=2.4e-08 Score=84.61 Aligned_cols=53 Identities=36% Similarity=0.803 Sum_probs=46.3
Q ss_pred CccccccccccCCce-------EEeCCCCchhhHHhHHHHhccCCcccccccccc--ceeEee
Q 010517 453 SSSSCVICWEAPVEG-------ACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY 506 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~-------~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~i~i~ 506 (508)
+...|+||++.+.+. +..+|||.| |..|+.+|...++.||+||.++. +.+++|
T Consensus 71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~f-c~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~ 132 (133)
T 4ap4_A 71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVF-CSQCLRDSLKNANTCPTCRKKINHKRYHPIY 132 (133)
T ss_dssp SSCBCTTTCCBHHHHHHTTCCEEEETTSBEE-EHHHHHHHHHHCSBCTTTCCBCCGGGEEEEC
T ss_pred CCCCCCCCCCccccccccCcceEeCCCCChh-hHHHHHHHHHcCCCCCCCCCcCChhcceeee
Confidence 346899999987664 888999999 99999999988889999999997 577777
No 171
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.46 E-value=1e-07 Score=76.77 Aligned_cols=47 Identities=21% Similarity=0.457 Sum_probs=39.3
Q ss_pred CccccccccccCCc------------------eEEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010517 453 SSSSCVICWEAPVE------------------GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 500 (508)
Q Consensus 453 ~~~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 500 (508)
+...|.||++.+.. ++.++|+|.| |..|+..|...+..||+||+.+.
T Consensus 36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~F-H~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEE-EHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEE-CHHHHHHHHHcCCcCcCCCCcce
Confidence 34689999987653 4667999999 99999999888889999999853
No 172
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.42 E-value=2.5e-08 Score=82.41 Aligned_cols=45 Identities=31% Similarity=0.693 Sum_probs=40.7
Q ss_pred CccccccccccCCceEEe-CCCCchhhHHhHHHHhccCCcccccccccc
Q 010517 453 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 500 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 500 (508)
+...|+||++.+.+++.+ +|||.| |..|+..+.. ..||+||.++.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~f-C~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIF-CSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCB-CTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCHH-HHHHHHHHhc--CCCcCCCCcCc
Confidence 457999999999999999 999999 9999999875 57999999985
No 173
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.34 E-value=2.4e-07 Score=89.05 Aligned_cols=48 Identities=23% Similarity=0.188 Sum_probs=42.6
Q ss_pred CccccccccccCCceEEeCCCCchhhHHhHHHHhccCC-ccccccccccc
Q 010517 453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKKG-DCPVCRTKINQ 501 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~-~CP~Cr~~i~~ 501 (508)
....|+||++.+.++|.+||||.| |..|+..+...++ .||+||.++..
T Consensus 207 ~~~~c~i~~~~~~dPv~~~~gh~f-~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBCSSEEECSSCCEE-ETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred cccCCcCcCCHhcCCeECCCCCEE-CHHHHHHHHHHCCCCCcCCCCCCch
Confidence 447999999999999999999999 9999999987643 49999999863
No 174
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.31 E-value=2.6e-07 Score=81.75 Aligned_cols=49 Identities=31% Similarity=0.602 Sum_probs=43.2
Q ss_pred CCccccccccccCCceEEeCCCCchhhHHhHHHHhccC-Cccccccccccc
Q 010517 452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ 501 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CP~Cr~~i~~ 501 (508)
.+...|+||++.+.+++.++|||.| |..|+..|...+ ..||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~pv~~~CgH~f-C~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcCcEECCCCCHH-HHHHHHHHHHhCCCCCCCCccCcch
Confidence 4557999999999999999999999 999999987653 489999999874
No 175
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.28 E-value=4.2e-07 Score=79.91 Aligned_cols=48 Identities=21% Similarity=0.123 Sum_probs=42.9
Q ss_pred CccccccccccCCceEEeCCCCchhhHHhHHHHhccC-Cccccccccccc
Q 010517 453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKAKK-GDCPVCRTKINQ 501 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~-~~CP~Cr~~i~~ 501 (508)
+...|+||++.+.++|.+||||.| |..|+..+.... ..||+||.++..
T Consensus 105 ~~f~CPI~~elm~DPV~~~~Ghtf-er~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFELMREPCITPSGITY-DRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCSBCSSEEECTTSCEE-EHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred HhhcccCccccCCCCeECCCCCEE-CHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 457999999999999999999999 999999998764 369999999863
No 176
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.27 E-value=5.4e-07 Score=71.10 Aligned_cols=45 Identities=22% Similarity=0.399 Sum_probs=39.3
Q ss_pred CccccccccccCCceEEeC-CCCchhhHHhHHHHhccC------Ccccc--cccc
Q 010517 453 SSSSCVICWEAPVEGACVP-CGHMAGCMSCLSEIKAKK------GDCPV--CRTK 498 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~~~~p-CgH~~~C~~C~~~~~~~~------~~CP~--Cr~~ 498 (508)
++..|+||++.+.++|.++ |||.| |..|+..|+... ..||+ |+..
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f-~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTY-EEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEE-EHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhcCCEEcCCCCCee-cHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 4478999999999999996 99999 999999998653 47999 9865
No 177
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.24 E-value=1.6e-07 Score=76.64 Aligned_cols=46 Identities=22% Similarity=0.474 Sum_probs=0.4
Q ss_pred ccccccccccCCc------------------eEEeCCCCchhhHHhHHHHhccCCcccccccccc
Q 010517 454 SSSCVICWEAPVE------------------GACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKIN 500 (508)
Q Consensus 454 ~~~C~iC~~~~~~------------------~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 500 (508)
...|.||++.+.+ ++..+|+|.| |..|+..|...+..||+||+++.
T Consensus 48 ~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~F-H~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 48 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAF-HFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp C----------------------------------------------------------------
T ss_pred CCcCeECChhhcCcChhhhcccccccccccccccCCcCceE-cHHHHHHHHHcCCcCCCCCCeee
Confidence 3689999988754 2335999999 99999999887788999999853
No 178
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.05 E-value=1.8e-06 Score=65.53 Aligned_cols=48 Identities=23% Similarity=0.500 Sum_probs=38.9
Q ss_pred CccccccccccC--CceEEeCCC-----CchhhHHhHHHHhccC--Cccccccccccc
Q 010517 453 SSSSCVICWEAP--VEGACVPCG-----HMAGCMSCLSEIKAKK--GDCPVCRTKINQ 501 (508)
Q Consensus 453 ~~~~C~iC~~~~--~~~~~~pCg-----H~~~C~~C~~~~~~~~--~~CP~Cr~~i~~ 501 (508)
+...|.||++.. .+.+++||. |.| +..|+.+|...+ ..||+||..+.-
T Consensus 14 ~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~f-H~~Cl~~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 14 SQDICRICHCEGDDESPLITPCHCTGSLHFV-HQACLQQWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp TSCCCSSSCCCCCSSSCEECSSSCCSSSCCE-ETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred CCCCCeEcCccccCCCeeEeccccCCcCCee-CHHHHHHHHhhCCCCCCCCCCCeeec
Confidence 446899999764 355678996 999 999999997764 489999998863
No 179
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.00 E-value=6.2e-06 Score=76.09 Aligned_cols=47 Identities=17% Similarity=0.316 Sum_probs=41.3
Q ss_pred CccccccccccCCceEEe-CCCCchhhHHhHHHHhccC--Ccccc--cccccc
Q 010517 453 SSSSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKK--GDCPV--CRTKIN 500 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~--~~CP~--Cr~~i~ 500 (508)
.+..|+||++.+.++|.. .|||.| |..|+..++... ..||+ ||+.+.
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsF-cR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVF-DRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEE-EHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred eeeECcCccCcccCCeeeCCCCCcc-cHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 446999999999999985 999999 999999998753 47999 999875
No 180
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.97 E-value=4e-06 Score=60.01 Aligned_cols=51 Identities=14% Similarity=0.256 Sum_probs=45.2
Q ss_pred cccccccccCCceEEe-CCCCchhhHHhHHHHhccCCcccccccccc--ceeEee
Q 010517 455 SSCVICWEAPVEGACV-PCGHMAGCMSCLSEIKAKKGDCPVCRTKIN--QVIRLY 506 (508)
Q Consensus 455 ~~C~iC~~~~~~~~~~-pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~--~~i~i~ 506 (508)
..|+||++...++|.. +|||.| |..|+.+|...++.||+++.++. +.++++
T Consensus 4 ~~CpIs~~~m~dPV~~~~sG~~y-er~~I~~~l~~~~~cP~t~~~L~~~~Lip~~ 57 (61)
T 2bay_A 4 MLCAISGKVPRRPVLSPKSRTIF-EKSLLEQYVKDTGNDPITNEPLSIEEIVEIV 57 (61)
T ss_dssp CCCTTTCSCCSSEEEETTTTEEE-EHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred EEecCCCCCCCCCEEeCCCCcEE-cHHHHHHHHHhCCCCcCCcCCCChhhcEECc
Confidence 5899999999999999 999999 99999999877678999999985 456554
No 181
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=97.81 E-value=4.9e-06 Score=65.57 Aligned_cols=44 Identities=25% Similarity=0.558 Sum_probs=34.2
Q ss_pred ccccccccccCCceEE---eCCCCchhhHHhHHHHhcc--------CCcccc--cccc
Q 010517 454 SSSCVICWEAPVEGAC---VPCGHMAGCMSCLSEIKAK--------KGDCPV--CRTK 498 (508)
Q Consensus 454 ~~~C~iC~~~~~~~~~---~pCgH~~~C~~C~~~~~~~--------~~~CP~--Cr~~ 498 (508)
...|.||++....... .+|||.| |..|+...... ...||. |+..
T Consensus 5 ~~~C~IC~~~~~~~~~~~l~~CgH~F-C~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 5 SSGCKLCLGEYPVEQMTTIAQCQCIF-CTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp BCCCSSSCCCCBGGGEEEETTTTEEE-EHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CcCCcccCcccccccceEcCCCCCcc-cHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 3689999998765433 3799999 99999887652 137999 9988
No 182
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.66 E-value=3.8e-05 Score=59.19 Aligned_cols=49 Identities=22% Similarity=0.486 Sum_probs=36.9
Q ss_pred ccccccccCCce-EEeCCCCchhhHHhHHHHhcc-CCccccccccccceeEe
Q 010517 456 SCVICWEAPVEG-ACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKINQVIRL 505 (508)
Q Consensus 456 ~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~~~i~i 505 (508)
.|.+|--..... ..+||.|.| |..|+..+... .+.||.||.+|..+-++
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvF-CydCa~~~~~~~~k~Cp~C~~~V~rVe~~ 53 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVF-CYDCAILHEKKGDKMCPGCSDPVQRIEQC 53 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEE-EHHHHHHHHHTTCCBCTTTCCBCSEEEEE
T ss_pred ecCccCCCeEEEeeeccccccH-HHHHHHHHHhccCCCCcCcCCeeeeeEEe
Confidence 577775554333 355999999 99999998754 57899999999876554
No 183
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.52 E-value=0.00011 Score=54.44 Aligned_cols=49 Identities=22% Similarity=0.630 Sum_probs=39.4
Q ss_pred CCccccccccccCCce-EEeCCCCchhhHHhHHHHhccC--Cccccccccccc
Q 010517 452 GSSSSCVICWEAPVEG-ACVPCGHMAGCMSCLSEIKAKK--GDCPVCRTKINQ 501 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~~-~~~pCgH~~~C~~C~~~~~~~~--~~CP~Cr~~i~~ 501 (508)
+....|.||++..... ....|+|.| ...|+.+|.+.+ ..||+||+....
T Consensus 13 ~~i~~C~IC~~~i~~g~~C~~C~h~f-H~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCSSSEECSSSCCEE-CHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcccCCccCCCCchh-hHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 3447999999986533 344899999 999999998776 789999998763
No 184
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=97.25 E-value=0.00013 Score=51.75 Aligned_cols=49 Identities=27% Similarity=0.434 Sum_probs=37.7
Q ss_pred CCccccccccccCCceEEeCCCCc----hhhHHhHHHHhcc--CCcccccccccc
Q 010517 452 GSSSSCVICWEAPVEGACVPCGHM----AGCMSCLSEIKAK--KGDCPVCRTKIN 500 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~~~~~pCgH~----~~C~~C~~~~~~~--~~~CP~Cr~~i~ 500 (508)
++...|.||++...+..+.||.+. ++...|+.+|... +..||+||..+.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 345799999987666667897752 4499999999764 468999998764
No 185
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.94 E-value=0.00018 Score=68.69 Aligned_cols=49 Identities=27% Similarity=0.678 Sum_probs=37.4
Q ss_pred CCccccccccccCCc------eEE--eCCCCchhhHHhHHHHhccC-----------Cccccccccccc
Q 010517 452 GSSSSCVICWEAPVE------GAC--VPCGHMAGCMSCLSEIKAKK-----------GDCPVCRTKINQ 501 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~------~~~--~pCgH~~~C~~C~~~~~~~~-----------~~CP~Cr~~i~~ 501 (508)
+...+|.||++...+ .++ .+|+|.| ...|+..|.+.. +.||+||++|..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~F-H~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKC-HAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCB-CSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCcc-chHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 345799999987544 223 2799999 999999987541 469999999974
No 186
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.22 E-value=0.0077 Score=45.47 Aligned_cols=48 Identities=25% Similarity=0.735 Sum_probs=40.0
Q ss_pred cccccccccCCceEEeCCC-CchhhHHhHHHHhccCCccccccccccceeEe
Q 010517 455 SSCVICWEAPVEGACVPCG-HMAGCMSCLSEIKAKKGDCPVCRTKINQVIRL 505 (508)
Q Consensus 455 ~~C~iC~~~~~~~~~~pCg-H~~~C~~C~~~~~~~~~~CP~Cr~~i~~~i~i 505 (508)
..|-.|+-.....| .|. |.+ |..|...|......||+|..++...|++
T Consensus 29 ~nCKsCWf~~k~LV--~C~dHYL-Cl~CLtlmL~~SdrCpIC~~pLPtkl~~ 77 (99)
T 2ko5_A 29 QFCKSCWFENKGLV--ECNNHYL-CLNCLTLLLSVSNRCPICKMPLPTKLRP 77 (99)
T ss_dssp CCCCSSCSCCSSEE--ECSSCEE-EHHHHHHTCSSSSEETTTTEECCCCSCT
T ss_pred ccChhhccccCCee--eecchhh-HHHHHHHHHhhccCCcccCCcCCcceec
Confidence 58999998887554 477 777 9999999998888999999999877654
No 187
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=94.10 E-value=0.028 Score=40.91 Aligned_cols=33 Identities=30% Similarity=0.623 Sum_probs=28.0
Q ss_pred CccccccccccCCceEEeCCC----CchhhHHhHHHHh
Q 010517 453 SSSSCVICWEAPVEGACVPCG----HMAGCMSCLSEIK 486 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~~~~pCg----H~~~C~~C~~~~~ 486 (508)
....|.+|.++..+.-|+.|- |.| |+.|.....
T Consensus 14 a~l~CtlC~erLEdtHFVQCPsv~~HkF-CFpCsr~sI 50 (93)
T 2cs3_A 14 GPLCCTICHERLEDTHFVQCPSVPSHKF-CFPCSRESI 50 (93)
T ss_dssp CSCCCSSSCSCCSSTTSEECSSCSSCEE-CHHHHHHHH
T ss_pred CeeEeecchhhhccCceeeCCCccCCee-eccccHHHH
Confidence 336999999999999999884 999 999987743
No 188
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=89.90 E-value=0.22 Score=45.74 Aligned_cols=47 Identities=21% Similarity=0.594 Sum_probs=36.5
Q ss_pred ccccccccccCCc-eEEeCCCCchhhHHhHHHHhccC--Cccccccccccc
Q 010517 454 SSSCVICWEAPVE-GACVPCGHMAGCMSCLSEIKAKK--GDCPVCRTKINQ 501 (508)
Q Consensus 454 ~~~C~iC~~~~~~-~~~~pCgH~~~C~~C~~~~~~~~--~~CP~Cr~~i~~ 501 (508)
...|.||.+.... ..+-.|+|.| ...|+..+.+.+ ..||.|+.....
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~-H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEE-CHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHH-HHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 3689999998543 3344599999 999999987653 489999987653
No 189
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=89.50 E-value=0.12 Score=40.53 Aligned_cols=31 Identities=23% Similarity=0.510 Sum_probs=24.6
Q ss_pred cccccccccc-CCceEE--eCCCCchhhHHhHHHH
Q 010517 454 SSSCVICWEA-PVEGAC--VPCGHMAGCMSCLSEI 485 (508)
Q Consensus 454 ~~~C~iC~~~-~~~~~~--~pCgH~~~C~~C~~~~ 485 (508)
+..|.||.+. +..++. +.|+|.| |..|...+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~-C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSY-CDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEE-CHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHH-hHHHCHHH
Confidence 3689999974 444444 8999999 99999983
No 190
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=77.12 E-value=2.8 Score=31.26 Aligned_cols=46 Identities=30% Similarity=0.730 Sum_probs=32.7
Q ss_pred ccccccccccC-------CceEEeCCCCchhhHHhHHHHhcc-CCcccccccccc
Q 010517 454 SSSCVICWEAP-------VEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTKIN 500 (508)
Q Consensus 454 ~~~C~iC~~~~-------~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~i~ 500 (508)
...|.||-|.. .-+++.-|+--+ |..|..--++. +..||.|.+...
T Consensus 16 ~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPv-CrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 16 GQFCEICGDQIGLTVEGDLFVACNECGFPA-CRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp SCBCSSSCCBCCBCSSSSBCCSCSSSCCCC-CHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred CCccccccCccccCCCCCEEEeeeccCChh-hHHHHHHHHhccCccccccCCccc
Confidence 36999999872 122233566555 99999886554 678999998875
No 191
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=75.70 E-value=2.2 Score=34.73 Aligned_cols=51 Identities=22% Similarity=0.479 Sum_probs=37.4
Q ss_pred CCCCCCCccccccccccCCceEEeCCCCchhhHHhHHHH------h-----ccCCcccccccc
Q 010517 447 NVKDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEI------K-----AKKGDCPVCRTK 498 (508)
Q Consensus 447 ~~~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~------~-----~~~~~CP~Cr~~ 498 (508)
..++++.+..|.||-+.-.-...-.|-..| |..|+.+. . ...+.|+.|+.+
T Consensus 50 ~~d~Dg~~~~C~vC~dGG~LlcCd~Cpr~F-c~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 50 SRDSDGMDEQCRWCAEGGNLICCDFCHNAF-CKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp CBCTTSCBSSCTTTCCCSEEEECSSSSCEE-EHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred ccCCCCCCCcCeecCCCCeeEecCCCchhh-hHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 345566778899999886655555788888 99999863 1 234789999764
No 192
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=69.95 E-value=0.68 Score=44.12 Aligned_cols=45 Identities=22% Similarity=0.488 Sum_probs=34.6
Q ss_pred ccccccccccCCceEEe----CCCCch-hhHHhHHHHhccCCcccccccc
Q 010517 454 SSSCVICWEAPVEGACV----PCGHMA-GCMSCLSEIKAKKGDCPVCRTK 498 (508)
Q Consensus 454 ~~~C~iC~~~~~~~~~~----pCgH~~-~C~~C~~~~~~~~~~CP~Cr~~ 498 (508)
...|+||-..+...++. .=|+++ .|..|...|...+.+||.|-..
T Consensus 182 ~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 182 RTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp CSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 36999999998766654 245433 3999999998878899999875
No 193
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=67.38 E-value=4.8 Score=33.36 Aligned_cols=49 Identities=22% Similarity=0.491 Sum_probs=37.4
Q ss_pred CCCCCccccccccccCCceEEeCCCCchhhHHhHHHHh-----------ccCCcccccccc
Q 010517 449 KDDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIK-----------AKKGDCPVCRTK 498 (508)
Q Consensus 449 ~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~-----------~~~~~CP~Cr~~ 498 (508)
.+++.+..|.||.+.-.-...-.|-..| |..|+.... ...+.||.|+..
T Consensus 58 d~Dg~~d~C~vC~~GG~LlcCD~Cpr~F-h~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~ 117 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEGGNLICCDFCHNAF-CKKCILRNLGRKELSTIMDENNQWYCYICHPE 117 (142)
T ss_dssp CTTSCBCSCSSSCCCSSEEECSSSCCEE-EHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCC
T ss_pred cCCCCCCeecccCCCCcEEeCCCCCCee-eHhhcCCCCChhhhhhcccCCCCCEeecccCc
Confidence 4466778999999988766666888888 999998532 235789999853
No 194
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=66.56 E-value=2.7 Score=29.87 Aligned_cols=44 Identities=16% Similarity=0.375 Sum_probs=31.4
Q ss_pred ccccccccccCCceEEeCCCCchhhHHhHHHHhc----cCCcccccccc
Q 010517 454 SSSCVICWEAPVEGACVPCGHMAGCMSCLSEIKA----KKGDCPVCRTK 498 (508)
Q Consensus 454 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~----~~~~CP~Cr~~ 498 (508)
...|.||.+.......--|...| ...|...-.. ..+.||.|+..
T Consensus 12 ~~~C~vC~~~~~ll~Cd~C~~~~-H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 12 GARCGVCGDGTDVLRCTHCAAAF-HWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp TCCCTTTSCCTTCEECSSSCCEE-CHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCcCCCCCCCeEEECCCCCCce-ecccCCCccCcCCCCCEECccccCC
Confidence 35799999877655566888777 9999753222 24679999754
No 195
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=56.94 E-value=9 Score=28.30 Aligned_cols=32 Identities=22% Similarity=0.474 Sum_probs=22.0
Q ss_pred CCccccccccccCCceEEeCCC---CchhhHHhHHHH
Q 010517 452 GSSSSCVICWEAPVEGACVPCG---HMAGCMSCLSEI 485 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~~~~~pCg---H~~~C~~C~~~~ 485 (508)
.++..|.||-.-.... .+||+ -+| ...|..++
T Consensus 13 ~~D~~C~VC~~~t~~~-l~pCRvC~Rvf-H~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEVWTAES-LFPCRVCTRVF-HDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCCCCSSC-CSSCSSSSSCC-CHHHHHHH
T ss_pred CCCcccCccccccccc-eeccccccccc-cHhhcccc
Confidence 4557999997544333 33554 666 99999998
No 196
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=54.71 E-value=51 Score=28.27 Aligned_cols=133 Identities=10% Similarity=-0.043 Sum_probs=87.1
Q ss_pred CCchHHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHH
Q 010517 15 QSKDELLYQWVIAGDVDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVAKTLIELGANINAYRPGGRGGTPLHHAA 94 (508)
Q Consensus 15 ~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~ 94 (508)
.+.++-+-+|...|++++...+.+.. .+...+.-|--+|...|++++++.-..+--|+.. -+.+..
T Consensus 6 ~D~~~rF~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~---------L~~Ly~ 71 (177)
T 3mkq_B 6 QDPHIRFDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFDK---------LSFLYL 71 (177)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHH---------HHHHHH
T ss_pred CChHHHHHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHH---------HHHHHH
Confidence 35578899999999999988876642 1222334444455555999999999888655543 355555
Q ss_pred HcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCH-HHHHHHHHcCCcccccccccCCCCHHHHHHhhcCCHHHHHH
Q 010517 95 KRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHI-NVVRAIESHICYFCGWLREFYGPSFLEALAPQLMSRKIWVV 173 (508)
Q Consensus 95 ~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~-~~v~~Ll~~ga~~~~~~~~~~g~tpL~~~A~~~~~~~i~~~ 173 (508)
..|+.+-++.|.+.. ....+-..+++.+...|.+ +++++|.+.|--.. +.. .|..+|..++++-
T Consensus 72 ~tg~~e~L~kla~iA----~~~g~~n~af~~~l~lGdv~~~i~lL~~~~r~~e----------A~~-~A~t~g~~~~a~~ 136 (177)
T 3mkq_B 72 VTGDVNKLSKMQNIA----QTREDFGSMLLNTFYNNSTKERSSIFAEGGSLPL----------AYA-VAKANGDEAAASA 136 (177)
T ss_dssp HHTCHHHHHHHHHHH----HHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHH----------HHH-HHHHTTCHHHHHH
T ss_pred HhCCHHHHHHHHHHH----HHCccHHHHHHHHHHcCCHHHHHHHHHHCCChHH----------HHH-HHHHcCcHHHHHH
Confidence 677777766664321 1222334578888888887 58888877654322 333 6777888888886
Q ss_pred hhh
Q 010517 174 VIP 176 (508)
Q Consensus 174 Ll~ 176 (508)
+++
T Consensus 137 ~~~ 139 (177)
T 3mkq_B 137 FLE 139 (177)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 197
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=52.50 E-value=7.3 Score=27.30 Aligned_cols=34 Identities=29% Similarity=0.693 Sum_probs=26.1
Q ss_pred CCCccccccccccCCceEEeCC-CCchhhHHhHHHHh
Q 010517 451 DGSSSSCVICWEAPVEGACVPC-GHMAGCMSCLSEIK 486 (508)
Q Consensus 451 ~~~~~~C~iC~~~~~~~~~~pC-gH~~~C~~C~~~~~ 486 (508)
.++..-|+||.+- ...-.+.| |-.| |..|...+-
T Consensus 5 ~ee~pWC~ICneD-AtlrC~gCdgDLY-C~rC~rE~H 39 (67)
T 2d8v_A 5 SSGLPWCCICNED-ATLRCAGCDGDLY-CARCFREGH 39 (67)
T ss_dssp CCCCSSCTTTCSC-CCEEETTTTSEEE-CSSHHHHHT
T ss_pred CcCCCeeEEeCCC-CeEEecCCCCcee-hHHHHHHHc
Confidence 3445789999998 55778899 5555 999988875
No 198
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=48.66 E-value=9.2 Score=26.49 Aligned_cols=45 Identities=24% Similarity=0.496 Sum_probs=29.4
Q ss_pred CCccccccccccCCceEEeCCCCchhhHHhHHHHh----ccCCccccccc
Q 010517 452 GSSSSCVICWEAPVEGACVPCGHMAGCMSCLSEIK----AKKGDCPVCRT 497 (508)
Q Consensus 452 ~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~----~~~~~CP~Cr~ 497 (508)
.+...|.||.+...-...-.|.-.| ...|...-. ...+.||.|+.
T Consensus 9 ~~~~~C~vC~~~g~ll~CD~C~~~f-H~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 9 DHQDYCEVCQQGGEIILCDTCPRAY-HMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCCSSCTTTSCCSSEEECSSSSCEE-EHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCCccCCCCCcEEECCCCChhh-hhhccCCCCCCCCCCceECccccc
Confidence 3457899998865433344666666 888876521 22467999975
No 199
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=48.31 E-value=2.7 Score=28.70 Aligned_cols=46 Identities=24% Similarity=0.603 Sum_probs=28.6
Q ss_pred CCCccccccccccCCceEEeCCCCchhhHHhHHH-Hh---ccCCccccccc
Q 010517 451 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSE-IK---AKKGDCPVCRT 497 (508)
Q Consensus 451 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~-~~---~~~~~CP~Cr~ 497 (508)
..++..|.||.+...-+..--|...| ...|... +. ...+.||.|+.
T Consensus 6 ~~~~~~C~vC~~~g~ll~Cd~C~~~~-H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSGQLLMCDTCSRVY-HLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSSCCEECSSSSCEE-CSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCCeEEEcCCCCcce-ECccCCCCcCCCCCCceEChhhhC
Confidence 34557899999875444444666555 6667653 21 12456999964
No 200
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=47.02 E-value=1.3 Score=36.46 Aligned_cols=45 Identities=22% Similarity=0.569 Sum_probs=32.5
Q ss_pred CccccccccccC-----CceEEeCCCCchhhHHhHHHHhcc----CCcccccccc
Q 010517 453 SSSSCVICWEAP-----VEGACVPCGHMAGCMSCLSEIKAK----KGDCPVCRTK 498 (508)
Q Consensus 453 ~~~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~~~~~----~~~CP~Cr~~ 498 (508)
++..|.+|...+ ...++.-|.|.+ |..|....... .+.|-+|+..
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNV-CTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEE-ETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCccc-ccccCCccCCCCCccceechhhHHH
Confidence 346899999886 344677899999 99997655221 2469999764
No 201
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=43.42 E-value=2.4 Score=35.79 Aligned_cols=45 Identities=20% Similarity=0.550 Sum_probs=32.1
Q ss_pred CccccccccccC-----CceEEeCCCCchhhHHhHHHHhcc-CCcccccccc
Q 010517 453 SSSSCVICWEAP-----VEGACVPCGHMAGCMSCLSEIKAK-KGDCPVCRTK 498 (508)
Q Consensus 453 ~~~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~~~~~-~~~CP~Cr~~ 498 (508)
++..|.+|...+ .-.++.-|.|.+ |..|....... .+.|-+|+..
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~V-C~~C~~~~~~~~~W~C~vC~k~ 117 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFV-CKSCSHAHPEEQGWLCDPCHLA 117 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEE-CGGGEECCSSSSSCEEHHHHHH
T ss_pred CCccchhhcCccccccCCCCcCCCCCchh-hcccccccCCCCcEeeHHHHHH
Confidence 457999999973 456677899999 99997332211 2469999764
No 202
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=43.39 E-value=3.9 Score=28.47 Aligned_cols=48 Identities=21% Similarity=0.452 Sum_probs=29.4
Q ss_pred CCCccccccccccCCceEEeCCCCchhhHHhHHH-Hh---ccCCccccccccc
Q 010517 451 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSE-IK---AKKGDCPVCRTKI 499 (508)
Q Consensus 451 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~-~~---~~~~~CP~Cr~~i 499 (508)
+.++..|.||.+...-...-.|...| ...|... +. ...+.||.|+...
T Consensus 6 d~~~~~C~vC~~~g~ll~Cd~C~~~f-H~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDGGELLCCDTCPSSY-HIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCCSSCBCCSSSCCCB-CSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCCCCEEEcCCCCHHH-cccccCCCcCcCCCCccCChhhcCch
Confidence 34557899998765433344566555 6667653 22 2245799997654
No 203
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=41.77 E-value=20 Score=39.35 Aligned_cols=51 Identities=10% Similarity=0.025 Sum_probs=44.3
Q ss_pred CCCCccccccccccCCceEEeCCCC-chhhHHhHHHHhccCCccccccccccc
Q 010517 450 DDGSSSSCVICWEAPVEGACVPCGH-MAGCMSCLSEIKAKKGDCPVCRTKINQ 501 (508)
Q Consensus 450 ~~~~~~~C~iC~~~~~~~~~~pCgH-~~~C~~C~~~~~~~~~~CP~Cr~~i~~ 501 (508)
+.+++..|+|-++-..++|.+|.|| .+ =..++.+|....+.||+-|+++..
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~Ty-dR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNI-DRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEE-EHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEE-CHHHHHHHHhcCCCCCCCCCCCCc
Confidence 3456789999999999999999985 56 999999998777889999999864
No 204
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=41.42 E-value=9.7 Score=26.26 Aligned_cols=40 Identities=23% Similarity=0.605 Sum_probs=29.7
Q ss_pred cccccccccCCceE---EeCCCCchhhHHhHHHHhccCCccccc
Q 010517 455 SSCVICWEAPVEGA---CVPCGHMAGCMSCLSEIKAKKGDCPVC 495 (508)
Q Consensus 455 ~~C~iC~~~~~~~~---~~pCgH~~~C~~C~~~~~~~~~~CP~C 495 (508)
..|-.|...+.+.. .-.|++.| |.+|-.-+-..-..||.|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~F-C~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVF-CVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCB-CHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCc-ccchhHHHHhhccCCcCC
Confidence 35888988875543 33788888 999977766555679988
No 205
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=40.95 E-value=4.1 Score=36.31 Aligned_cols=48 Identities=19% Similarity=0.414 Sum_probs=30.5
Q ss_pred CCCccccccccccCCceEEeCCCCchhhHHhHHH----HhccCCccccccccc
Q 010517 451 DGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSE----IKAKKGDCPVCRTKI 499 (508)
Q Consensus 451 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~----~~~~~~~CP~Cr~~i 499 (508)
+.++..|.||.+...-..+-.|...| ...|... +-...+.||.|+..-
T Consensus 4 d~~~~~C~~C~~~g~ll~Cd~C~~~~-H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNGGDLLCCEKCPKVF-HLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCCEEEEECSSSSCEE-CTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCCCceEEcCCCCCcc-CCccCCCCCCCCCCCCEEeCceeCcc
Confidence 44557899998765444444677666 7777643 112346799998643
No 206
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.81 E-value=3.3 Score=31.28 Aligned_cols=48 Identities=19% Similarity=0.484 Sum_probs=29.8
Q ss_pred CccccccccccCC---ceE--EeCCCCchhhHHhHHH--------HhccCCccccccccccc
Q 010517 453 SSSSCVICWEAPV---EGA--CVPCGHMAGCMSCLSE--------IKAKKGDCPVCRTKINQ 501 (508)
Q Consensus 453 ~~~~C~iC~~~~~---~~~--~~pCgH~~~C~~C~~~--------~~~~~~~CP~Cr~~i~~ 501 (508)
+...|.||..... +.+ .-.|...| ...|... +-...+.|+.|+.....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~y-H~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLY-HQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEE-ETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeE-cCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 4568999997632 222 33676666 7777542 22335789999876543
No 207
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=38.21 E-value=16 Score=35.45 Aligned_cols=45 Identities=24% Similarity=0.580 Sum_probs=32.3
Q ss_pred cccccccccCCceE-EeCCCCchhhHHhHHHHh----ccCCcccccccccc
Q 010517 455 SSCVICWEAPVEGA-CVPCGHMAGCMSCLSEIK----AKKGDCPVCRTKIN 500 (508)
Q Consensus 455 ~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~~----~~~~~CP~Cr~~i~ 500 (508)
..|++-+.+...++ ...|.|.- |++-..-+. ...+.||+|.+.+.
T Consensus 250 L~CPlS~~ri~~PvRg~~C~HlQ-CFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 250 LQCPISYTRMKYPSKSINCKHLQ-CFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp SBCTTTSSBCSSEEEETTCCSSC-CEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred ecCCCccccccccCcCCcCCCcc-eECHHHHHHHhhcCCceeCCCCCcccC
Confidence 58999888877776 44899997 666543332 22578999998774
No 208
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=37.49 E-value=69 Score=31.31 Aligned_cols=49 Identities=24% Similarity=0.239 Sum_probs=35.1
Q ss_pred HHHHcCCHHHHHHHHHcCCCCCccC--------------CCCChHHHHHHHhCCCHHHHHHHHH
Q 010517 23 QWVIAGDVDAIRALRSQGASLEWMD--------------KEGKTPLIVACMDSGLINVAKTLIE 72 (508)
Q Consensus 23 ~Aa~~g~~~~v~~Ll~~g~~~~~~d--------------~~G~TpLh~Aa~~~g~~~~v~~Ll~ 72 (508)
..+..|+...|+..|..|.|++.+= .-|.|.+|+|++. .+.+++-.|+.
T Consensus 28 ~gv~e~~~~~ve~y~~~gg~~~r~lt~~e~~lln~~~af~~g~tlvhlair~-~r~~~l~~ll~ 90 (454)
T 3zrh_A 28 VGVVEGDLAAIEAYKSSGGDIARQLTADEVRLLNRPSAFDVGYTLVHLAIRF-QRQDMLAILLT 90 (454)
T ss_dssp HHHHHTCHHHHHHHHTTTCCTTCCCCHHHHHHHCCTTTCCTTCCHHHHHHHT-TCHHHHHHHHH
T ss_pred HHHHcCChhHHHHHHhcCCchhcccCHHHHHHhCCCcccccCchhhhhhhhh-hhhhHHHHhhh
Confidence 4557899999999999998875431 2466666666666 66666666665
No 209
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=34.74 E-value=16 Score=27.45 Aligned_cols=49 Identities=18% Similarity=0.320 Sum_probs=29.1
Q ss_pred CCCccccccccccC-----CceEEeCCCCchhhHHhHHHH--hccCCcccccccccc
Q 010517 451 DGSSSSCVICWEAP-----VEGACVPCGHMAGCMSCLSEI--KAKKGDCPVCRTKIN 500 (508)
Q Consensus 451 ~~~~~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~~--~~~~~~CP~Cr~~i~ 500 (508)
..++..|.||.+.. .-+..-.|.-.| ...|...- -...+.||.|.....
T Consensus 22 ~~~~~~C~vC~~~~s~~~~~ll~CD~C~~~f-H~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 22 IDEDAVCSICMDGESQNSNVILFCDMCNLAV-HQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCCSSCCSSSSCSEEEEEECSSSCCCC-CHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCCcCCcCCCCCCCCCCCEEECCCCCchh-hcccCCCCccCCCceECccccCccc
Confidence 34557999999764 222222565454 67776532 223567999976543
No 210
>2csz_A Synaptotagmin-like protein 4; exophilin 2, granuphilin, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.13 E-value=4.9 Score=29.24 Aligned_cols=47 Identities=26% Similarity=0.580 Sum_probs=32.9
Q ss_pred CCccccccccccC-----CceEEeCCCCchhhHHhHHHHhccCCccccccccc
Q 010517 452 GSSSSCVICWEAP-----VEGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTKI 499 (508)
Q Consensus 452 ~~~~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i 499 (508)
..+..|..|.+.+ .-.+..-|.|.+ |..|-.......+.|-+|-+..
T Consensus 23 ~~~r~CarC~~~LG~l~~~g~~C~~Ck~rV-C~~Crv~~~~~~W~C~VC~k~~ 74 (76)
T 2csz_A 23 YSDRTCARCQESLGRLSPKTNTCRGCNHLV-CRDCRIQESNGTWRCKVCSGPS 74 (76)
T ss_dssp CCCCBCSSSCCBCSSSCTTTSEETTTTEEC-CTTSEEECSTTCEEEHHHHSSC
T ss_pred CCccchhhhCccccccccCCCcCcccChhh-cccccccCCCCCEEEeeCchhh
Confidence 4457999999874 456677899999 9999443333345688886543
No 211
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=33.65 E-value=20 Score=34.53 Aligned_cols=45 Identities=22% Similarity=0.424 Sum_probs=32.8
Q ss_pred cccccccccCCceE-EeCCCCchhhHHhHHHHhc----cCCcccccccccc
Q 010517 455 SSCVICWEAPVEGA-CVPCGHMAGCMSCLSEIKA----KKGDCPVCRTKIN 500 (508)
Q Consensus 455 ~~C~iC~~~~~~~~-~~pCgH~~~C~~C~~~~~~----~~~~CP~Cr~~i~ 500 (508)
..|++-+.+...++ ...|.|.- |++-..-+.. ..+.||+|.+.+.
T Consensus 216 L~CPlS~~ri~~P~Rg~~C~Hlq-CFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLTIPCRAVTCTHLQ-CFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCSSEEEETTCCCCC-CEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceeccCCcCCCCCCCc-cCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 57999888877776 44899997 7666444332 2478999998875
No 212
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=33.54 E-value=8.3 Score=27.20 Aligned_cols=47 Identities=19% Similarity=0.511 Sum_probs=30.0
Q ss_pred CccccccccccCCceEEeCCCCchhhHHhHHH-Hh---ccCCcccccccccc
Q 010517 453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSE-IK---AKKGDCPVCRTKIN 500 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~-~~---~~~~~CP~Cr~~i~ 500 (508)
++..|.||.+...-+..--|.-.| ...|... +. ...+.||.|...-.
T Consensus 7 ~~~~C~vC~~~g~ll~CD~C~~~f-H~~Cl~ppl~~~P~g~W~C~~C~~~~~ 57 (66)
T 1xwh_A 7 NEDECAVCRDGGELICCDGCPRAF-HLACLSPPLREIPSGTWRCSSCLQATV 57 (66)
T ss_dssp CCCSBSSSSCCSSCEECSSCCCEE-CTTTSSSCCSSCCSSCCCCHHHHHTCC
T ss_pred CCCCCccCCCCCCEEEcCCCChhh-cccccCCCcCcCCCCCeECccccCccc
Confidence 457899999875544445676555 6677652 21 23457999976543
No 213
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=32.47 E-value=69 Score=32.44 Aligned_cols=140 Identities=14% Similarity=-0.018 Sum_probs=74.8
Q ss_pred HHHHHHcCCHHHH----HHHHHcCCCCCccCCCCChHHHHHHHhCCC-------------HHHHHHHHHcCCCCcccCCC
Q 010517 21 LYQWVIAGDVDAI----RALRSQGASLEWMDKEGKTPLIVACMDSGL-------------INVAKTLIELGANINAYRPG 83 (508)
Q Consensus 21 L~~Aa~~g~~~~v----~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~-------------~~~v~~Ll~~ga~~n~~~~d 83 (508)
|...++.|+++-+ +.+.+.|..+|... ++.|..++...+. .++.+.+.+.|..+|..
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~t---yn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~--- 106 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLSQYH---YNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA--- 106 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCCHHH---HHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH---
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCCHhH---HHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH---
Confidence 4444578887544 44455777665433 5667766654222 35667777888887754
Q ss_pred CCCCcHHHHHHHcCCHHHHHHH----HHCCCCccccCCCCCcHHHHHHHhCCHHHH----HHHHHcCCcccccccccCCC
Q 010517 84 GRGGTPLHHAAKRGLEPTVRLL----LSCGANALVRNDDCHTALGVARIKGHINVV----RAIESHICYFCGWLREFYGP 155 (508)
Q Consensus 84 ~~g~tpLh~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~TpLh~A~~~g~~~~v----~~Ll~~ga~~~~~~~~~~g~ 155 (508)
.-.+-+...+..|..+-+..| .+.|..++.... .+.+...++.|..+-+ +.+.+.|..++ ..-.
T Consensus 107 -tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty--n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd-----~~ty 178 (501)
T 4g26_A 107 -TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY--GPALFGFCRKGDADKAYEVDAHMVESEVVPE-----EPEL 178 (501)
T ss_dssp -HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH--HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCC-----HHHH
T ss_pred -HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee--hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCC-----HHHH
Confidence 222445566777887654444 455665543321 1344455677776533 34445555444 1112
Q ss_pred CHHHHHHhhcCCHHHHHHh
Q 010517 156 SFLEALAPQLMSRKIWVVV 174 (508)
Q Consensus 156 tpL~~~A~~~~~~~i~~~L 174 (508)
+.|....+..|..+-+..+
T Consensus 179 ~~Li~~~~~~g~~d~A~~l 197 (501)
T 4g26_A 179 AALLKVSMDTKNADKVYKT 197 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhhCCCHHHHHHH
Confidence 2333255666665444433
No 214
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=31.65 E-value=12 Score=28.20 Aligned_cols=48 Identities=19% Similarity=0.461 Sum_probs=29.4
Q ss_pred CCCCccccccccccCCceEEeCCCCchhhHHhHHH-H---hccCCcccccccc
Q 010517 450 DDGSSSSCVICWEAPVEGACVPCGHMAGCMSCLSE-I---KAKKGDCPVCRTK 498 (508)
Q Consensus 450 ~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~-~---~~~~~~CP~Cr~~ 498 (508)
.+.+...|.||.+.-.-...--|.-.| ...|... + -...+.||.|+..
T Consensus 21 ~d~n~~~C~vC~~~g~LL~CD~C~~~f-H~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 21 LDDSATICRVCQKPGDLVMCNQCEFCF-HLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSSCCSSSCSSSCCEECTTSSCEE-CTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred cCCCCCcCcCcCCCCCEEECCCCCCce-ecccCCCCCCCCcCCCcCCccccCC
Confidence 345667999999876544444565555 6666533 1 1224579999753
No 215
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=31.53 E-value=33 Score=33.40 Aligned_cols=53 Identities=25% Similarity=0.514 Sum_probs=39.8
Q ss_pred CCCCCCCCccccccccccCCceEEe--CCCCchhhHHhHHHHhc----------cCCccccccccc
Q 010517 446 SNVKDDGSSSSCVICWEAPVEGACV--PCGHMAGCMSCLSEIKA----------KKGDCPVCRTKI 499 (508)
Q Consensus 446 ~~~~~~~~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~~----------~~~~CP~Cr~~i 499 (508)
-..++++.+.-|.+|-+...-..+- .|...| |..|+.++.. .++.|=+|...-
T Consensus 85 f~~D~DG~~~yCr~C~~Gg~l~~Cdn~~C~r~F-C~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~p 149 (386)
T 2pv0_B 85 FLYDDDGYQSYCSICCSGETLLICGNPDCTRCY-CFECVDSLVGPGTSGKVHAMSNWVCYLCLPSS 149 (386)
T ss_dssp TCBCSSSSBCSCTTTCCCSSCEECCSTTCCCEE-CHHHHHHHTCTTHHHHHHHCSSCCCTTTSSCC
T ss_pred cccCCCCCcccceEcCCCCeEEEeCCCCCCcch-HHHHHHHhcChhHHHHhhccCCceEEEcCCcc
Confidence 3445567778999999987766666 788888 9999988752 246799997654
No 216
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=29.02 E-value=9.6 Score=28.94 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=27.6
Q ss_pred CCCccccccccccCC---ceEEeCCCCchhhHHhHHH-Hh---ccCCcccccccc
Q 010517 451 DGSSSSCVICWEAPV---EGACVPCGHMAGCMSCLSE-IK---AKKGDCPVCRTK 498 (508)
Q Consensus 451 ~~~~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~-~~---~~~~~CP~Cr~~ 498 (508)
..+...|.||..... -+..--|...| ...|... +. ...+.||.|+..
T Consensus 13 ~~~~~~C~vC~~~~~~~~ll~CD~C~~~~-H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 13 FIDSYICQVCSRGDEDDKLLFCDGCDDNY-HIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCCSSSCCSGGGGGCEECTTTCCEE-CSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred ccCCCCCccCCCcCCCCCEEEcCCCCchh-ccccCCCCcccCCCCCcCCccCcCc
Confidence 345568999987642 33333666555 5666542 21 224579999764
No 217
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=28.53 E-value=29 Score=29.17 Aligned_cols=52 Identities=27% Similarity=0.563 Sum_probs=35.8
Q ss_pred CCCCCCCccccccccccCCceEEe--CCCCchhhHHhHHHHhc----------cCCccccccccc
Q 010517 447 NVKDDGSSSSCVICWEAPVEGACV--PCGHMAGCMSCLSEIKA----------KKGDCPVCRTKI 499 (508)
Q Consensus 447 ~~~~~~~~~~C~iC~~~~~~~~~~--pCgH~~~C~~C~~~~~~----------~~~~CP~Cr~~i 499 (508)
..++++.+.-|.||-+...-...- .|-..| |..|+.++.. ..+.|=+|...-
T Consensus 72 ~~DeDG~~~yC~wC~~Gg~l~~Cdn~~C~r~F-C~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P~~ 135 (159)
T 3a1b_A 72 QYDDDGYQSYCTICCGGREVLMCGNNNCCRCF-CVECVDLLVGPGAAQAAIKEDPWNCYMCGHKG 135 (159)
T ss_dssp CBCTTSSBSSCTTTSCCSEEEECSSTTTCCEE-EHHHHHHHTCTTHHHHHHTSSSCCCTTTCSSC
T ss_pred ccCCCCCcceeeEecCCCeEEeeCCCCCCCch-hHHHHHHhcCHhHHHHHhccCCCEEEecCCcc
Confidence 345566778999999876433333 566777 9999888743 135798886543
No 218
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=27.80 E-value=8.5 Score=26.51 Aligned_cols=46 Identities=22% Similarity=0.580 Sum_probs=28.9
Q ss_pred CccccccccccCCceEEeCCCCchhhHHhHHH-Hh---ccCCccccccccc
Q 010517 453 SSSSCVICWEAPVEGACVPCGHMAGCMSCLSE-IK---AKKGDCPVCRTKI 499 (508)
Q Consensus 453 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~-~~---~~~~~CP~Cr~~i 499 (508)
++..|.||.+...-+..--|.-.| ...|... +. ...+.||.|+...
T Consensus 4 ~~~~C~vC~~~g~ll~Cd~C~~~f-H~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 4 HEDFCSVCRKSGQLLMCDTCSRVY-HLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCSSCTTTCCCSSCEECSSSSCEE-CGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCcCCCCCCcEEEcCCCCcCE-ECCcCCCCcCCCCCCceEChhccChh
Confidence 446899998875544444666555 6777653 21 1245799997654
No 219
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=24.21 E-value=1.5e+02 Score=29.95 Aligned_cols=102 Identities=11% Similarity=-0.007 Sum_probs=58.2
Q ss_pred HHHHHHHHHcCCCCCccCCCCChHHHHHHHhCCCHHHH----HHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHH---
Q 010517 30 VDAIRALRSQGASLEWMDKEGKTPLIVACMDSGLINVA----KTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTV--- 102 (508)
Q Consensus 30 ~~~v~~Ll~~g~~~~~~d~~G~TpLh~Aa~~~g~~~~v----~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v--- 102 (508)
.++++.+.+.|..+|... ++.|.-+..+.|..+-+ +.+.+.|..+|.. .-.+.|...+..|..+-+
T Consensus 90 ~~lf~~M~~~G~~Pd~~t---yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~----tyn~lI~~~~~~g~~~~A~~l 162 (501)
T 4g26_A 90 FDIFKQMIVDKVVPNEAT---FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR----SYGPALFGFCRKGDADKAYEV 162 (501)
T ss_dssp HHHHHHHHHTTCCCCHHH---HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH----HHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc----eehHHHHHHHHCCCHHHHHHH
Confidence 356777778888766543 35555444333776544 4445668777754 122445556778887644
Q ss_pred -HHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHH
Q 010517 103 -RLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIES 140 (508)
Q Consensus 103 -~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~ 140 (508)
+.+.+.|..++.... .+.+...++.|+.+-+.-|++
T Consensus 163 ~~~M~~~G~~Pd~~ty--~~Li~~~~~~g~~d~A~~ll~ 199 (501)
T 4g26_A 163 DAHMVESEVVPEEPEL--AALLKVSMDTKNADKVYKTLQ 199 (501)
T ss_dssp HHHHHHTTCCCCHHHH--HHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHhcCCCCCHHHH--HHHHHHHhhCCCHHHHHHHHH
Confidence 444566776554321 134555567788764444443
No 220
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=22.72 E-value=16 Score=25.59 Aligned_cols=47 Identities=30% Similarity=0.458 Sum_probs=28.2
Q ss_pred CccccccccccC-----CceEEeCCCCchhhHHhHHH------H-hccCCcccccccccc
Q 010517 453 SSSSCVICWEAP-----VEGACVPCGHMAGCMSCLSE------I-KAKKGDCPVCRTKIN 500 (508)
Q Consensus 453 ~~~~C~iC~~~~-----~~~~~~pCgH~~~C~~C~~~------~-~~~~~~CP~Cr~~i~ 500 (508)
++..|.||.... .-+..-.|.-.| ...|... + -...+.|+.|+....
T Consensus 5 ~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~-H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~ 63 (66)
T 2yt5_A 5 SSGVCTICQEEYSEAPNEMVICDKCGQGY-HQLCHTPHIDSSVIDSDEKWLCRQCVFATT 63 (66)
T ss_dssp CCCCBSSSCCCCCBTTBCEEECSSSCCEE-ETTTSSSCCCHHHHHSSCCCCCHHHHHTTS
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCChHH-HhhhCCCcccccccCCCCCEECCCCcCccc
Confidence 446899998762 222233666555 6667542 2 223568999976543
No 221
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=20.47 E-value=12 Score=29.97 Aligned_cols=43 Identities=26% Similarity=0.617 Sum_probs=28.1
Q ss_pred cccccccccCC----ceEEeCCCCchhhHHhHHHHhccCCcccccccc
Q 010517 455 SSCVICWEAPV----EGACVPCGHMAGCMSCLSEIKAKKGDCPVCRTK 498 (508)
Q Consensus 455 ~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~ 498 (508)
..|..|...+. .-....||..| |..|........+.|-.|...
T Consensus 20 ~~C~~C~~~Fs~~~RkHHCR~CG~if-C~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 20 PSCKSCGAHFANTARKQTCLDCKKNF-CMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp CCCTTTCCCCSSGGGCEECTTTCCEE-CGGGEEC----CCEEHHHHHH
T ss_pred CcccCcCCccccccccccCCCCCCee-CHHHhCCCCCCceECHHHHHH
Confidence 58999988763 34466899999 999955432223357777553
No 222
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=20.44 E-value=27 Score=28.08 Aligned_cols=29 Identities=24% Similarity=0.776 Sum_probs=22.6
Q ss_pred cccccccccCC----ceEEeCCCCchhhHHhHHH
Q 010517 455 SSCVICWEAPV----EGACVPCGHMAGCMSCLSE 484 (508)
Q Consensus 455 ~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~ 484 (508)
..|.+|...+. .--...||+.| |..|...
T Consensus 70 ~~C~~C~~~Fs~~~RrHHCR~CG~vf-C~~Cs~~ 102 (125)
T 1joc_A 70 QNCMACGKGFSVTVRRHHCRQCGNIF-CAECSAK 102 (125)
T ss_dssp CBCTTTCCBCCSSSCCEECTTTCCEE-CGGGSCE
T ss_pred CCCcCcCCccccccccccCCCCCeEE-ChHHhCC
Confidence 58999998764 33556899999 9999654
No 223
>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}
Probab=20.04 E-value=2.2e+02 Score=27.88 Aligned_cols=59 Identities=12% Similarity=-0.006 Sum_probs=41.1
Q ss_pred CCHHHHHHHHHcCCCCcccCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCcHHHHHHHhCCHHHHHHHHHc
Q 010517 62 GLINVAKTLIELGANINAYRPGGRGGTPLHHAAKRGLEPTVRLLLSCGANALVRNDDCHTALGVARIKGHINVVRAIESH 141 (508)
Q Consensus 62 g~~~~v~~Ll~~ga~~n~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~ 141 (508)
|+...|+.-+..|.|++-+ -|..-.+..+. .+ . -.-|.|-+|+|++..+.+++.+|+..
T Consensus 33 ~~~~~ve~y~~~gg~~~r~------lt~~e~~lln~------------~~--a-f~~g~tlvhlair~~r~~~l~~ll~~ 91 (454)
T 3zrh_A 33 GDLAAIEAYKSSGGDIARQ------LTADEVRLLNR------------PS--A-FDVGYTLVHLAIRFQRQDMLAILLTE 91 (454)
T ss_dssp TCHHHHHHHHTTTCCTTCC------CCHHHHHHHCC------------TT--T-CCTTCCHHHHHHHTTCHHHHHHHHHH
T ss_pred CChhHHHHHHhcCCchhcc------cCHHHHHHhCC------------Cc--c-cccCchhhhhhhhhhhhhHHHHhhhc
Confidence 7788888888888777643 34433332221 11 2 34689999999999999999999873
Done!