Query 010521
Match_columns 508
No_of_seqs 250 out of 1622
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 08:35:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9z_H Sigma factor SIGA; heli 100.0 3.3E-50 1.1E-54 426.6 33.0 310 191-506 94-438 (438)
2 2a6h_F RNA polymerase sigma fa 100.0 9.6E-50 3.3E-54 422.7 28.9 306 191-505 79-422 (423)
3 3iyd_F RNA polymerase sigma fa 100.0 2.7E-40 9.3E-45 365.0 -6.4 270 194-506 341-612 (613)
4 3ugo_A RNA polymerase sigma fa 100.0 1E-33 3.5E-38 279.8 15.0 208 189-396 5-245 (245)
5 1rp3_A RNA polymerase sigma fa 100.0 1.7E-29 5.9E-34 242.3 23.5 221 263-498 11-237 (239)
6 1l0o_C Sigma factor; bergerat 100.0 3.1E-31 1.1E-35 254.2 6.1 239 200-493 4-243 (243)
7 1or7_A Sigma-24, RNA polymeras 99.9 8.6E-23 2.9E-27 190.4 19.0 167 264-497 23-189 (194)
8 2q1z_A RPOE, ECF SIGE; ECF sig 99.9 1.7E-23 5.7E-28 193.9 8.6 157 264-496 27-183 (184)
9 3mzy_A RNA polymerase sigma-H 99.8 9.1E-21 3.1E-25 170.9 14.6 155 288-500 1-160 (164)
10 2lfw_A PHYR sigma-like domain; 99.7 4.3E-20 1.5E-24 169.0 -4.7 141 266-498 3-143 (157)
11 1sig_A Sigma70, RNA polymerase 99.7 1.9E-16 6.6E-21 162.5 10.8 109 192-337 230-338 (339)
12 3n0r_A Response regulator; sig 99.6 5.1E-16 1.7E-20 155.7 7.1 140 263-496 20-159 (286)
13 3t72_q RNA polymerase sigma fa 99.4 4.8E-13 1.6E-17 114.5 10.9 79 428-507 3-82 (99)
14 3hug_A RNA polymerase sigma fa 99.3 9.1E-12 3.1E-16 104.1 10.4 74 423-500 16-89 (92)
15 2p7v_B Sigma-70, RNA polymeras 99.2 7.2E-12 2.5E-16 98.9 2.2 63 444-506 4-67 (68)
16 1tty_A Sigma-A, RNA polymerase 99.1 6.5E-11 2.2E-15 98.1 6.2 71 436-507 10-81 (87)
17 2o7g_A Probable RNA polymerase 99.1 1.6E-10 5.5E-15 99.0 8.8 72 264-338 24-95 (112)
18 1ku3_A Sigma factor SIGA; heli 99.0 5.8E-11 2E-15 94.9 2.7 67 438-505 4-72 (73)
19 2o8x_A Probable RNA polymerase 99.0 6.1E-10 2.1E-14 87.3 6.8 65 433-501 4-68 (70)
20 1h3l_A RNA polymerase sigma fa 98.9 9.9E-10 3.4E-14 89.8 6.6 75 261-337 9-83 (87)
21 1xsv_A Hypothetical UPF0122 pr 98.8 1.4E-08 4.7E-13 88.5 10.5 72 429-503 9-80 (113)
22 1s7o_A Hypothetical UPF0122 pr 98.7 3E-08 1E-12 86.4 7.9 65 435-502 12-76 (113)
23 3clo_A Transcriptional regulat 98.7 4.4E-11 1.5E-15 117.8 -13.0 153 255-496 87-244 (258)
24 2rnj_A Response regulator prot 98.5 4.4E-08 1.5E-12 81.4 3.5 59 431-494 16-74 (91)
25 1jhg_A Trp operon repressor; c 98.5 7.7E-08 2.6E-12 82.3 5.0 68 429-497 19-90 (101)
26 3c57_A Two component transcrip 98.5 1.6E-07 5.5E-12 78.9 6.5 57 433-494 16-72 (95)
27 1x3u_A Transcriptional regulat 98.5 1.9E-07 6.6E-12 74.8 6.0 54 436-494 8-61 (79)
28 1je8_A Nitrate/nitrite respons 98.4 2.8E-07 9.7E-12 75.3 4.6 56 437-497 14-69 (82)
29 1fse_A GERE; helix-turn-helix 98.2 1.7E-06 5.7E-11 68.1 5.2 51 440-495 7-57 (74)
30 3ulq_B Transcriptional regulat 98.1 4.9E-06 1.7E-10 69.4 6.3 47 444-494 28-74 (90)
31 1p4w_A RCSB; solution structur 98.0 9.9E-06 3.4E-10 68.8 6.2 47 444-494 33-79 (99)
32 2jpc_A SSRB; DNA binding prote 98.0 5.7E-06 2E-10 62.9 4.2 43 448-494 1-43 (61)
33 2q0o_A Probable transcriptiona 97.5 0.00011 3.9E-09 70.7 7.0 46 445-494 175-220 (236)
34 1l3l_A Transcriptional activat 97.5 0.00012 4.1E-09 70.4 6.8 45 445-493 173-217 (234)
35 3szt_A QCSR, quorum-sensing co 97.4 0.00019 6.6E-09 69.4 6.3 46 444-493 174-219 (237)
36 3qp6_A CVIR transcriptional re 97.3 0.00031 1.1E-08 69.3 6.3 46 445-494 197-242 (265)
37 1tc3_C Protein (TC3 transposas 97.1 0.00058 2E-08 48.4 4.9 40 445-487 5-44 (51)
38 2w7n_A TRFB transcriptional re 96.9 0.0021 7.2E-08 54.8 7.0 46 445-493 18-63 (101)
39 2x48_A CAG38821; archeal virus 96.6 0.0012 4.2E-08 48.9 3.2 39 446-488 17-55 (55)
40 1yio_A Response regulatory pro 96.5 0.0071 2.4E-07 55.5 8.4 50 439-493 137-186 (208)
41 1a04_A Nitrate/nitrite respons 96.4 0.0057 1.9E-07 56.6 6.9 46 444-493 153-198 (215)
42 3c3w_A Two component transcrip 96.1 0.0075 2.6E-07 56.6 6.3 46 444-493 148-193 (225)
43 3iyd_F RNA polymerase sigma fa 95.8 0.0013 4.6E-08 72.4 -0.5 59 189-277 94-152 (613)
44 3klo_A Transcriptional regulat 95.4 0.011 3.7E-07 55.3 4.3 46 444-493 158-203 (225)
45 3p7n_A Sensor histidine kinase 94.8 0.072 2.5E-06 50.2 8.2 57 433-494 187-243 (258)
46 1p2f_A Response regulator; DRR 93.8 0.055 1.9E-06 50.0 4.7 49 445-493 145-196 (220)
47 1jko_C HIN recombinase, DNA-in 93.7 0.051 1.7E-06 38.6 3.4 33 451-487 12-44 (52)
48 2gwr_A DNA-binding response re 93.5 0.075 2.6E-06 49.9 5.3 49 445-493 153-206 (238)
49 2oqr_A Sensory transduction pr 93.3 0.068 2.3E-06 49.6 4.5 49 445-493 156-209 (230)
50 3kor_A Possible Trp repressor; 93.1 0.22 7.5E-06 43.5 7.1 39 445-489 61-99 (119)
51 1kgs_A DRRD, DNA binding respo 92.8 0.082 2.8E-06 48.8 4.3 50 445-494 151-205 (225)
52 1ys7_A Transcriptional regulat 92.5 0.078 2.7E-06 49.2 3.8 50 445-494 159-213 (233)
53 1zx4_A P1 PARB, plasmid partit 92.0 0.17 5.7E-06 47.8 5.3 36 450-489 14-49 (192)
54 1u78_A TC3 transposase, transp 92.0 0.16 5.6E-06 43.7 4.9 40 445-487 6-45 (141)
55 1pdn_C Protein (PRD paired); p 91.9 0.23 7.8E-06 41.6 5.6 41 445-488 17-57 (128)
56 2hqr_A Putative transcriptiona 91.2 0.069 2.4E-06 49.4 1.7 46 445-494 143-197 (223)
57 3ugo_A RNA polymerase sigma fa 91.0 0.041 1.4E-06 53.6 0.0 51 438-493 192-244 (245)
58 1qgp_A Protein (double strande 90.8 0.26 8.8E-06 39.4 4.6 40 448-487 14-54 (77)
59 3q9s_A DNA-binding response re 90.8 0.14 4.9E-06 48.8 3.6 49 445-493 182-235 (249)
60 1k78_A Paired box protein PAX5 90.4 0.36 1.2E-05 42.4 5.6 41 445-488 32-72 (149)
61 3frw_A Putative Trp repressor 90.1 0.45 1.5E-05 40.8 5.6 40 444-483 35-77 (107)
62 2elh_A CG11849-PA, LD40883P; s 89.6 0.52 1.8E-05 38.1 5.5 26 463-488 37-62 (87)
63 3r0j_A Possible two component 89.5 0.49 1.7E-05 44.7 6.1 50 445-494 176-230 (250)
64 2w48_A Sorbitol operon regulat 88.9 0.4 1.4E-05 47.9 5.2 36 452-490 12-47 (315)
65 1oyi_A Double-stranded RNA-bin 88.4 0.37 1.2E-05 39.4 3.7 25 463-487 29-53 (82)
66 3k2z_A LEXA repressor; winged 88.3 0.55 1.9E-05 43.6 5.4 41 445-485 2-45 (196)
67 1qbj_A Protein (double-strande 88.0 0.54 1.8E-05 38.1 4.5 38 450-487 12-50 (81)
68 2heo_A Z-DNA binding protein 1 87.7 0.6 2.1E-05 36.1 4.4 40 446-486 8-47 (67)
69 3r0a_A Putative transcriptiona 87.5 0.96 3.3E-05 38.9 6.1 42 444-487 22-65 (123)
70 2cfx_A HTH-type transcriptiona 87.3 0.94 3.2E-05 39.7 6.1 41 445-487 2-42 (144)
71 2jn6_A Protein CGL2762, transp 86.9 0.71 2.4E-05 37.7 4.7 40 446-488 6-47 (97)
72 2glo_A Brinker CG9653-PA; prot 86.8 0.75 2.6E-05 34.3 4.4 47 446-496 6-56 (59)
73 2cyy_A Putative HTH-type trans 86.5 1.3 4.4E-05 39.1 6.5 41 445-487 4-44 (151)
74 2lkp_A Transcriptional regulat 86.4 2.2 7.4E-05 35.8 7.6 39 446-487 30-68 (119)
75 2dbb_A Putative HTH-type trans 86.3 1.2 4.2E-05 39.1 6.3 42 444-487 5-46 (151)
76 3tgn_A ADC operon repressor AD 86.3 1.2 4.3E-05 38.0 6.2 40 445-487 35-74 (146)
77 3nqo_A MARR-family transcripti 86.2 1.9 6.6E-05 39.3 7.8 54 434-488 28-81 (189)
78 1i1g_A Transcriptional regulat 86.1 1.2 4.1E-05 38.5 6.0 40 446-487 2-41 (141)
79 2d1h_A ST1889, 109AA long hypo 86.0 1.3 4.3E-05 35.9 5.8 43 444-487 17-59 (109)
80 2w25_A Probable transcriptiona 86.0 1.1 3.8E-05 39.4 5.8 42 444-487 3-44 (150)
81 2cg4_A Regulatory protein ASNC 86.0 1.4 4.7E-05 38.9 6.5 41 445-487 5-45 (152)
82 1sfx_A Conserved hypothetical 86.0 1.1 3.7E-05 36.2 5.3 41 445-487 17-57 (109)
83 2l0k_A Stage III sporulation p 85.9 1.2 4.2E-05 37.0 5.6 38 448-488 7-44 (93)
84 2k27_A Paired box protein PAX- 85.8 0.39 1.3E-05 42.8 2.7 40 445-487 25-64 (159)
85 1uxc_A FRUR (1-57), fructose r 85.8 0.7 2.4E-05 35.7 3.8 24 465-488 1-24 (65)
86 2pn6_A ST1022, 150AA long hypo 85.3 1.3 4.6E-05 38.7 6.0 40 446-487 1-40 (150)
87 2p5v_A Transcriptional regulat 85.2 1.3 4.5E-05 39.5 6.0 41 445-487 7-47 (162)
88 3bro_A Transcriptional regulat 85.1 3.3 0.00011 35.0 8.3 44 445-488 31-74 (141)
89 1u78_A TC3 transposase, transp 85.0 4.1 0.00014 34.6 8.9 77 367-487 23-102 (141)
90 1r1u_A CZRA, repressor protein 84.9 2.4 8.1E-05 35.1 7.1 41 444-487 21-62 (106)
91 3i4p_A Transcriptional regulat 84.7 1.5 5E-05 39.4 6.1 41 446-488 1-41 (162)
92 3o9x_A Uncharacterized HTH-typ 84.4 2.3 7.8E-05 36.5 7.0 48 435-487 59-107 (133)
93 3eco_A MEPR; mutlidrug efflux 84.3 2.9 9.8E-05 35.4 7.5 53 436-488 18-71 (139)
94 3ech_A MEXR, multidrug resista 84.2 2 6.9E-05 36.7 6.6 52 435-488 21-75 (142)
95 2o3f_A Putative HTH-type trans 84.0 2.3 8E-05 36.1 6.7 61 436-497 10-76 (111)
96 3jth_A Transcription activator 83.7 2.2 7.6E-05 34.5 6.3 37 447-486 22-58 (98)
97 3pqk_A Biofilm growth-associat 83.7 3.1 0.0001 34.0 7.2 38 447-487 22-59 (102)
98 2dk5_A DNA-directed RNA polyme 83.6 0.79 2.7E-05 37.9 3.4 44 444-487 16-59 (91)
99 3bdd_A Regulatory protein MARR 82.8 3.3 0.00011 34.9 7.3 42 445-488 28-69 (142)
100 2gxg_A 146AA long hypothetical 82.8 1.9 6.5E-05 36.8 5.8 41 445-488 34-74 (146)
101 2e1c_A Putative HTH-type trans 82.7 1.9 6.5E-05 39.3 6.0 41 445-487 24-64 (171)
102 2fa5_A Transcriptional regulat 82.6 4.9 0.00017 34.9 8.6 42 445-488 46-87 (162)
103 2x4h_A Hypothetical protein SS 82.4 1.8 6.1E-05 37.1 5.5 43 445-487 10-54 (139)
104 2zkz_A Transcriptional repress 82.4 2.7 9.1E-05 34.5 6.3 45 437-487 19-64 (99)
105 3cuo_A Uncharacterized HTH-typ 82.4 3.1 0.00011 33.2 6.7 39 447-487 23-61 (99)
106 2ia0_A Putative HTH-type trans 82.1 1.9 6.6E-05 39.1 5.8 42 444-487 13-54 (171)
107 1ku9_A Hypothetical protein MJ 82.1 3.4 0.00012 35.1 7.1 42 445-487 23-64 (152)
108 3bpv_A Transcriptional regulat 82.1 2.2 7.4E-05 36.0 5.8 41 445-487 26-66 (138)
109 1r1t_A Transcriptional repress 81.7 5 0.00017 34.3 8.0 46 436-487 37-82 (122)
110 3iwf_A Transcription regulator 81.3 3.1 0.00011 35.2 6.4 62 435-497 5-72 (107)
111 2nnn_A Probable transcriptiona 81.2 3 0.0001 35.1 6.4 41 445-487 35-75 (140)
112 3hsr_A HTH-type transcriptiona 81.1 3.1 0.00011 35.5 6.5 51 436-488 23-74 (140)
113 3cdh_A Transcriptional regulat 81.1 5.2 0.00018 34.5 8.1 42 445-488 40-81 (155)
114 1q1h_A TFE, transcription fact 80.8 1.2 4.2E-05 36.9 3.7 41 444-485 14-54 (110)
115 4hbl_A Transcriptional regulat 80.6 5.1 0.00018 34.5 7.8 43 444-488 37-79 (149)
116 2a6c_A Helix-turn-helix motif; 80.5 1.9 6.3E-05 34.0 4.5 26 462-487 29-54 (83)
117 2qww_A Transcriptional regulat 80.4 4.2 0.00014 35.0 7.2 42 445-488 38-79 (154)
118 3nrv_A Putative transcriptiona 80.3 2.6 8.9E-05 36.1 5.8 42 445-488 37-78 (148)
119 1uly_A Hypothetical protein PH 80.3 2.5 8.7E-05 39.3 6.0 39 446-487 18-56 (192)
120 2kko_A Possible transcriptiona 80.3 4.7 0.00016 33.5 7.2 37 448-487 25-61 (108)
121 3qq6_A HTH-type transcriptiona 80.2 1.7 5.8E-05 34.0 4.1 26 462-487 21-46 (78)
122 1jgs_A Multiple antibiotic res 80.2 4.8 0.00016 33.9 7.4 52 435-488 20-72 (138)
123 4b8x_A SCO5413, possible MARR- 80.1 3.9 0.00013 35.7 6.9 53 436-488 22-75 (147)
124 1hlv_A CENP-B, major centromer 79.7 2.2 7.7E-05 36.3 5.1 44 445-491 7-52 (131)
125 2xi8_A Putative transcription 79.6 1.7 5.7E-05 31.9 3.7 25 463-487 13-37 (66)
126 1zug_A Phage 434 CRO protein; 79.6 1.9 6.4E-05 32.2 4.1 25 463-487 15-39 (71)
127 3oop_A LIN2960 protein; protei 79.2 3.3 0.00011 35.3 6.1 42 445-488 34-75 (143)
128 2a61_A Transcriptional regulat 79.2 2.6 8.7E-05 35.9 5.3 42 445-488 30-71 (145)
129 1r69_A Repressor protein CI; g 79.2 2 6.7E-05 31.9 4.1 25 463-487 13-37 (69)
130 2htj_A P fimbrial regulatory p 79.1 4.4 0.00015 31.8 6.3 25 463-487 13-37 (81)
131 1y0u_A Arsenical resistance op 78.7 7.3 0.00025 31.4 7.7 36 447-486 30-65 (96)
132 3kz3_A Repressor protein CI; f 78.6 1.3 4.4E-05 34.5 3.0 25 463-487 24-48 (80)
133 3bj6_A Transcriptional regulat 78.6 5.4 0.00019 34.1 7.3 42 445-488 37-78 (152)
134 1s3j_A YUSO protein; structura 78.5 3.8 0.00013 35.2 6.3 43 444-488 33-75 (155)
135 2rdp_A Putative transcriptiona 78.4 2.7 9.1E-05 36.1 5.2 42 445-488 39-80 (150)
136 2fbh_A Transcriptional regulat 78.4 2.7 9.4E-05 35.6 5.3 42 445-487 34-75 (146)
137 3s2w_A Transcriptional regulat 78.3 3.4 0.00012 36.1 5.9 42 445-488 47-88 (159)
138 1y7y_A C.AHDI; helix-turn-heli 78.2 2.2 7.5E-05 32.1 4.1 25 463-487 25-49 (74)
139 2pex_A Transcriptional regulat 78.2 2.5 8.5E-05 36.5 5.0 42 445-488 44-85 (153)
140 1on2_A Transcriptional regulat 78.0 2.3 7.9E-05 36.6 4.7 25 463-487 21-45 (142)
141 3f6w_A XRE-family like protein 77.9 1.7 5.8E-05 33.8 3.5 25 463-487 26-50 (83)
142 3cjn_A Transcriptional regulat 77.9 2.5 8.6E-05 36.9 5.0 42 445-488 49-90 (162)
143 3b7h_A Prophage LP1 protein 11 77.9 2.6 8.7E-05 32.1 4.5 26 462-487 18-43 (78)
144 3g3z_A NMB1585, transcriptiona 77.9 6.1 0.00021 33.6 7.4 42 444-487 27-68 (145)
145 2oqg_A Possible transcriptiona 77.8 5.4 0.00018 32.8 6.8 38 447-487 20-57 (114)
146 3t76_A VANU, transcriptional r 77.8 2.1 7.3E-05 34.8 4.1 26 462-487 35-60 (88)
147 1sfu_A 34L protein; protein/Z- 77.8 4 0.00014 32.7 5.5 27 463-489 28-54 (75)
148 1p6r_A Penicillinase repressor 77.7 2.7 9.2E-05 33.0 4.6 43 444-488 5-51 (82)
149 2b5a_A C.BCLI; helix-turn-heli 77.7 2.3 7.8E-05 32.3 4.1 25 463-487 22-46 (77)
150 2nyx_A Probable transcriptiona 77.6 4.2 0.00014 36.0 6.5 42 445-488 42-83 (168)
151 2r1j_L Repressor protein C2; p 77.6 1.9 6.4E-05 31.8 3.5 25 463-487 17-41 (68)
152 2k9q_A Uncharacterized protein 77.4 1.8 6.2E-05 33.3 3.5 25 463-487 14-38 (77)
153 3f3x_A Transcriptional regulat 77.4 5.5 0.00019 33.9 7.0 41 445-488 34-74 (144)
154 2fbi_A Probable transcriptiona 77.3 2.2 7.5E-05 36.1 4.3 42 445-488 33-74 (142)
155 3omt_A Uncharacterized protein 77.3 1.6 5.4E-05 33.2 3.0 25 463-487 20-44 (73)
156 3k0l_A Repressor protein; heli 77.2 5.5 0.00019 34.9 7.0 42 445-488 43-84 (162)
157 4ghj_A Probable transcriptiona 77.1 2.2 7.4E-05 35.8 4.1 26 462-487 47-72 (101)
158 2wiu_B HTH-type transcriptiona 77.1 2.9 9.8E-05 32.7 4.6 25 463-487 24-48 (88)
159 2fu4_A Ferric uptake regulatio 77.1 6 0.0002 30.9 6.5 42 445-486 14-60 (83)
160 3eus_A DNA-binding protein; st 76.8 2.2 7.5E-05 33.9 3.9 26 462-487 25-50 (86)
161 1neq_A DNA-binding protein NER 76.7 2.1 7E-05 33.8 3.6 26 462-487 20-45 (74)
162 2qvo_A Uncharacterized protein 76.6 1.8 6.2E-05 35.1 3.4 42 445-487 9-53 (95)
163 3kp7_A Transcriptional regulat 76.5 4.3 0.00015 35.0 6.1 41 445-488 35-75 (151)
164 1jhf_A LEXA repressor; LEXA SO 76.4 1.9 6.4E-05 39.8 3.8 43 444-486 2-48 (202)
165 3s8q_A R-M controller protein; 76.2 2.6 8.9E-05 32.7 4.1 25 463-487 23-47 (82)
166 2eth_A Transcriptional regulat 76.1 2.8 9.7E-05 36.4 4.7 42 445-488 41-82 (154)
167 1lj9_A Transcriptional regulat 76.1 2.4 8.1E-05 36.1 4.2 42 445-488 26-67 (144)
168 3fmy_A HTH-type transcriptiona 76.0 1.8 6.1E-05 33.4 3.0 37 446-487 11-47 (73)
169 1x57_A Endothelial differentia 76.0 3.7 0.00012 32.6 5.0 26 462-487 24-49 (91)
170 2kpj_A SOS-response transcript 75.7 3 0.0001 33.5 4.5 26 462-487 20-45 (94)
171 1adr_A P22 C2 repressor; trans 75.3 2.3 7.8E-05 32.1 3.5 25 463-487 17-41 (76)
172 2ef8_A C.ECOT38IS, putative tr 75.3 2.8 9.7E-05 32.3 4.1 25 463-487 22-46 (84)
173 2rn7_A IS629 ORFA; helix, all 75.1 1.8 6E-05 35.9 3.0 24 465-488 31-54 (108)
174 2ewt_A BLDD, putative DNA-bind 74.4 3.6 0.00012 30.7 4.4 25 463-487 20-46 (71)
175 3bs3_A Putative DNA-binding pr 74.3 2.8 9.6E-05 31.7 3.8 25 463-487 22-46 (76)
176 2jt1_A PEFI protein; solution 74.2 2.3 7.8E-05 34.1 3.3 24 463-486 23-46 (77)
177 3bd1_A CRO protein; transcript 73.5 2.9 9.8E-05 32.4 3.7 25 463-488 11-35 (79)
178 2ppx_A AGR_C_3184P, uncharacte 73.5 3 0.0001 34.0 3.9 25 463-487 42-66 (99)
179 1tbx_A ORF F-93, hypothetical 73.4 2.8 9.7E-05 33.8 3.8 42 445-488 5-50 (99)
180 2r0q_C Putative transposon TN5 73.1 2.9 9.8E-05 39.0 4.2 32 451-486 166-197 (209)
181 3u2r_A Regulatory protein MARR 72.8 3.8 0.00013 36.2 4.8 44 445-488 43-86 (168)
182 2p5k_A Arginine repressor; DNA 72.7 5.3 0.00018 29.4 4.9 25 462-486 17-46 (64)
183 2jsc_A Transcriptional regulat 72.7 4.7 0.00016 34.1 5.1 38 447-487 20-57 (118)
184 2frh_A SARA, staphylococcal ac 72.6 2.6 9E-05 35.8 3.6 43 445-487 34-76 (127)
185 3g5g_A Regulatory protein; tra 72.5 3.4 0.00012 34.0 4.1 25 463-487 40-64 (99)
186 1gdt_A GD resolvase, protein ( 72.4 3.4 0.00012 37.6 4.4 31 452-486 150-180 (183)
187 2hin_A GP39, repressor protein 72.4 3 0.0001 32.8 3.5 22 466-487 12-33 (71)
188 3fm5_A Transcriptional regulat 72.3 9.7 0.00033 32.6 7.2 42 445-487 36-77 (150)
189 1ub9_A Hypothetical protein PH 72.2 2.8 9.7E-05 33.4 3.5 39 447-487 15-53 (100)
190 1rp3_A RNA polymerase sigma fa 72.1 50 0.0017 29.9 12.6 35 227-261 104-138 (239)
191 2ecc_A Homeobox and leucine zi 72.0 4.6 0.00016 32.3 4.6 50 445-494 9-60 (76)
192 2da4_A Hypothetical protein DK 71.8 7.4 0.00025 30.7 5.8 47 445-494 14-69 (80)
193 1xmk_A Double-stranded RNA-spe 71.7 2.4 8.4E-05 34.1 2.9 26 462-487 23-49 (79)
194 2o38_A Hypothetical protein; a 71.7 3.5 0.00012 35.4 4.1 26 462-487 51-76 (120)
195 3bja_A Transcriptional regulat 71.5 2.1 7.4E-05 36.0 2.7 42 445-488 30-71 (139)
196 3f6o_A Probable transcriptiona 71.3 5.8 0.0002 33.4 5.4 45 437-487 10-54 (118)
197 1lmb_3 Protein (lambda repress 71.1 2.8 9.6E-05 33.2 3.2 25 463-487 29-53 (92)
198 2l8n_A Transcriptional repress 71.0 1.8 6E-05 33.6 1.9 23 464-486 9-31 (67)
199 3e6m_A MARR family transcripti 71.0 6.9 0.00024 34.1 6.1 42 445-488 50-91 (161)
200 3jw4_A Transcriptional regulat 70.8 2.9 9.8E-05 36.0 3.4 44 445-488 38-81 (148)
201 2hr3_A Probable transcriptiona 70.7 3.4 0.00012 35.2 3.9 43 445-488 32-74 (147)
202 1z91_A Organic hydroperoxide r 70.7 3.4 0.00012 35.3 3.9 43 445-489 37-79 (147)
203 1okr_A MECI, methicillin resis 70.5 4.3 0.00015 33.9 4.4 44 444-489 6-53 (123)
204 3trb_A Virulence-associated pr 70.5 4.3 0.00015 33.9 4.3 26 462-487 25-50 (104)
205 2bv6_A MGRA, HTH-type transcri 70.2 2.4 8.3E-05 36.0 2.8 41 445-487 34-74 (142)
206 2wus_R RODZ, putative uncharac 70.1 4.9 0.00017 34.1 4.7 26 462-487 18-43 (112)
207 3kxa_A NGO0477 protein, putati 70.1 2.6 9E-05 37.1 3.0 26 462-487 79-104 (141)
208 2pij_A Prophage PFL 6 CRO; tra 70.0 4.4 0.00015 30.1 3.9 22 463-485 13-34 (67)
209 1rzs_A Antirepressor, regulato 70.0 2.4 8.3E-05 31.8 2.4 21 465-485 11-31 (61)
210 2ict_A Antitoxin HIGA; helix-t 69.7 3.9 0.00013 32.7 3.8 25 463-487 20-44 (94)
211 3deu_A Transcriptional regulat 69.7 4.7 0.00016 35.8 4.7 43 445-488 50-92 (166)
212 3sqn_A Conserved domain protei 69.6 6.9 0.00023 41.5 6.7 105 364-492 30-136 (485)
213 3boq_A Transcriptional regulat 69.5 5.7 0.00019 34.4 5.1 43 445-488 44-86 (160)
214 1pdn_C Protein (PRD paired); p 69.4 12 0.00041 30.7 6.9 24 367-390 34-57 (128)
215 1u2w_A CADC repressor, cadmium 69.4 7.8 0.00027 32.9 5.8 39 447-487 41-79 (122)
216 2vn2_A DNAD, chromosome replic 69.0 4.7 0.00016 34.8 4.4 45 445-489 29-76 (128)
217 2wte_A CSA3; antiviral protein 68.8 5.6 0.00019 38.4 5.3 42 444-487 148-189 (244)
218 3vk0_A NHTF, transcriptional r 68.6 3.8 0.00013 34.2 3.6 25 463-487 33-57 (114)
219 2jt1_A PEFI protein; solution 68.4 6.6 0.00022 31.3 4.8 28 364-391 22-49 (77)
220 2auw_A Hypothetical protein NE 68.2 4.2 0.00014 37.5 4.1 37 446-487 90-126 (170)
221 3op9_A PLI0006 protein; struct 67.8 4.6 0.00016 33.4 4.0 25 463-487 21-45 (114)
222 4aik_A Transcriptional regulat 67.5 9.1 0.00031 33.5 6.0 43 445-488 28-70 (151)
223 3a03_A T-cell leukemia homeobo 67.3 8.5 0.00029 28.2 4.9 50 445-494 3-54 (56)
224 2ao9_A Phage protein; structur 67.3 12 0.0004 34.0 6.8 44 444-487 22-71 (155)
225 3hyi_A Protein DUF199/WHIA; la 67.1 13 0.00044 37.2 7.6 43 444-488 242-284 (295)
226 3mlf_A Transcriptional regulat 67.1 5.3 0.00018 33.4 4.2 25 463-487 35-59 (111)
227 4ham_A LMO2241 protein; struct 66.8 13 0.00044 32.1 6.8 27 463-493 36-63 (134)
228 1b0n_A Protein (SINR protein); 66.5 5.4 0.00019 32.5 4.1 25 463-487 13-37 (111)
229 2l49_A C protein; P2 bacteriop 66.2 4.7 0.00016 32.3 3.6 25 463-487 16-40 (99)
230 2cw1_A SN4M; lambda CRO fold, 65.8 4.8 0.00016 31.1 3.4 22 465-486 14-35 (65)
231 2b0l_A GTP-sensing transcripti 65.8 5.8 0.0002 33.0 4.2 28 463-494 41-69 (102)
232 1yz8_P Pituitary homeobox 2; D 65.7 16 0.00054 27.8 6.4 52 445-496 9-62 (68)
233 2g9w_A Conserved hypothetical 65.6 8.7 0.0003 33.1 5.5 44 444-488 5-52 (138)
234 3qwg_A ESX-1 secretion-associa 65.6 4.4 0.00015 35.0 3.5 39 448-486 8-51 (123)
235 1ft9_A Carbon monoxide oxidati 65.6 5.6 0.00019 36.3 4.4 27 464-494 163-189 (222)
236 1rr7_A Middle operon regulator 65.5 9.4 0.00032 33.4 5.6 40 447-491 80-119 (129)
237 3ryp_A Catabolite gene activat 65.4 5.5 0.00019 35.7 4.3 27 464-494 167-193 (210)
238 3ivp_A Putative transposon-rel 65.1 6.9 0.00024 33.0 4.6 25 463-487 24-48 (126)
239 4fx0_A Probable transcriptiona 65.1 10 0.00034 33.1 5.8 44 445-488 30-76 (148)
240 2gau_A Transcriptional regulat 65.0 24 0.00082 32.1 8.7 47 444-494 149-206 (232)
241 2da1_A Alpha-fetoprotein enhan 64.9 14 0.00049 28.1 6.0 50 445-494 13-64 (70)
242 2oz6_A Virulence factor regula 64.9 5.7 0.00019 35.5 4.3 27 464-494 164-190 (207)
243 1j5y_A Transcriptional regulat 64.9 7.3 0.00025 35.7 5.0 39 447-486 20-58 (187)
244 3cec_A Putative antidote prote 64.7 4.4 0.00015 33.0 3.2 25 463-487 30-54 (104)
245 3dv8_A Transcriptional regulat 64.7 6.1 0.00021 35.7 4.5 27 464-494 169-195 (220)
246 3b73_A PHIH1 repressor-like pr 64.6 5.7 0.00019 33.9 3.9 40 446-487 11-52 (111)
247 3e97_A Transcriptional regulat 64.5 6 0.00021 36.2 4.5 27 464-494 175-201 (231)
248 2fxa_A Protease production reg 64.4 6.8 0.00023 36.4 4.8 42 445-488 45-86 (207)
249 1ais_B TFB TFIIB, protein (tra 64.0 85 0.0029 28.4 16.8 179 270-492 9-193 (200)
250 2zcw_A TTHA1359, transcription 64.0 6.1 0.00021 35.5 4.3 27 464-494 146-172 (202)
251 1g2h_A Transcriptional regulat 63.9 6.1 0.00021 29.7 3.6 22 465-486 34-55 (61)
252 2o0m_A Transcriptional regulat 63.8 1.4 5E-05 44.5 0.0 44 445-490 17-60 (345)
253 2eby_A Putative HTH-type trans 63.8 6.3 0.00022 32.5 4.0 26 462-487 22-47 (113)
254 1k78_A Paired box protein PAX5 63.6 20 0.00069 30.8 7.5 24 367-390 49-72 (149)
255 1fx7_A Iron-dependent represso 63.4 4 0.00014 38.6 3.0 43 445-487 3-47 (230)
256 3d0s_A Transcriptional regulat 63.3 6.5 0.00022 35.9 4.4 27 464-494 177-203 (227)
257 2fmy_A COOA, carbon monoxide o 63.0 6.4 0.00022 35.8 4.3 28 463-494 166-193 (220)
258 2cue_A Paired box protein PAX6 62.9 17 0.0006 28.5 6.3 54 445-498 13-68 (80)
259 4ev0_A Transcription regulator 62.8 6.5 0.00022 35.4 4.3 28 463-494 162-189 (216)
260 1sd4_A Penicillinase repressor 62.6 7.5 0.00026 32.5 4.3 43 444-488 6-52 (126)
261 3k2a_A Homeobox protein MEIS2; 62.5 4.4 0.00015 31.2 2.6 52 445-496 4-60 (67)
262 2v79_A DNA replication protein 62.4 8.7 0.0003 33.7 4.8 46 445-490 29-77 (135)
263 1xn7_A Hypothetical protein YH 62.2 8.2 0.00028 30.8 4.2 25 463-487 15-39 (78)
264 1ahd_P Antennapedia protein mu 62.2 20 0.00067 27.3 6.3 51 445-495 8-60 (68)
265 3nau_A Zinc fingers and homeob 62.1 11 0.00038 29.3 4.8 49 447-495 12-62 (66)
266 1ig7_A Homeotic protein MSX-1; 62.1 10 0.00035 27.7 4.5 50 445-494 6-57 (58)
267 1r71_A Transcriptional repress 62.1 9.1 0.00031 35.3 5.1 42 444-487 34-75 (178)
268 3fym_A Putative uncharacterize 62.1 7 0.00024 33.7 4.1 27 462-488 14-40 (130)
269 1jgg_A Segmentation protein EV 62.0 11 0.00038 27.9 4.7 50 445-494 7-58 (60)
270 3lfp_A CSP231I C protein; tran 62.0 6.1 0.00021 31.8 3.5 25 463-487 13-41 (98)
271 2dmq_A LIM/homeobox protein LH 62.0 10 0.00035 29.7 4.8 53 445-497 13-67 (80)
272 3la7_A Global nitrogen regulat 61.8 7.1 0.00024 36.4 4.5 27 464-494 193-219 (243)
273 3iwz_A CAP-like, catabolite ac 61.8 7 0.00024 35.6 4.3 27 464-494 187-213 (230)
274 3e6c_C CPRK, cyclic nucleotide 61.6 7.2 0.00025 36.3 4.5 27 464-494 177-203 (250)
275 3uj3_X DNA-invertase; helix-tu 61.5 1.7 5.8E-05 40.0 0.0 34 451-488 149-182 (193)
276 3f52_A CLP gene regulator (CLG 61.4 5.5 0.00019 33.1 3.2 25 463-487 40-64 (117)
277 3f6v_A Possible transcriptiona 61.3 7.4 0.00025 34.7 4.2 39 446-487 56-94 (151)
278 3b02_A Transcriptional regulat 61.0 6.1 0.00021 35.4 3.7 27 464-494 139-165 (195)
279 1b72_B Protein (PBX1); homeodo 60.9 12 0.00042 29.8 5.1 56 445-500 7-67 (87)
280 2dmn_A Homeobox protein TGIF2L 60.6 14 0.00048 29.5 5.4 53 445-497 13-70 (83)
281 2hzt_A Putative HTH-type trans 60.6 7.3 0.00025 32.2 3.8 41 444-487 9-51 (107)
282 1nk2_P Homeobox protein VND; h 60.5 13 0.00046 29.0 5.2 55 445-499 15-71 (77)
283 3dkw_A DNR protein; CRP-FNR, H 60.5 6.4 0.00022 35.8 3.8 27 464-494 178-204 (227)
284 2dmu_A Homeobox protein goosec 60.4 12 0.0004 28.6 4.8 51 445-495 13-65 (70)
285 1z4h_A TORI, TOR inhibition pr 60.2 7 0.00024 29.7 3.4 24 465-488 11-34 (66)
286 3r1f_A ESX-1 secretion-associa 60.2 6.3 0.00022 34.5 3.5 40 447-486 9-53 (135)
287 2hdd_A Protein (engrailed home 60.0 10 0.00035 28.2 4.2 50 445-494 9-60 (61)
288 3e7l_A Transcriptional regulat 59.7 8.6 0.00029 28.9 3.8 23 464-486 32-54 (63)
289 3lsg_A Two-component response 59.4 34 0.0012 27.4 7.8 33 453-488 10-43 (103)
290 2l1p_A DNA-binding protein SAT 59.4 5.6 0.00019 32.4 2.7 24 464-487 32-55 (83)
291 1puf_B PRE-B-cell leukemia tra 59.4 10 0.00035 29.3 4.2 55 445-499 7-66 (73)
292 1x2n_A Homeobox protein pknox1 59.2 8.8 0.0003 29.7 3.8 52 445-496 13-69 (73)
293 3tqn_A Transcriptional regulat 59.2 19 0.00065 30.1 6.3 27 463-493 31-58 (113)
294 2e1o_A Homeobox protein PRH; D 58.9 13 0.00043 28.5 4.7 51 445-495 13-65 (70)
295 1zq3_P PRD-4, homeotic bicoid 58.7 20 0.00069 27.2 5.8 53 445-497 8-62 (68)
296 1zyb_A Transcription regulator 58.6 8.3 0.00028 35.6 4.3 27 464-494 186-212 (232)
297 2h1k_A IPF-1, pancreatic and d 58.6 15 0.0005 27.5 4.9 50 445-494 9-60 (63)
298 2jvl_A TRMBF1; coactivator, he 58.5 5.6 0.00019 33.0 2.7 25 463-487 48-72 (107)
299 3a02_A Homeobox protein arista 58.4 9.4 0.00032 28.3 3.8 51 445-495 5-57 (60)
300 2qq9_A Diphtheria toxin repres 58.1 4.2 0.00014 38.4 2.1 43 445-487 3-47 (226)
301 1ic8_A Hepatocyte nuclear fact 57.9 23 0.00078 33.1 7.1 49 433-486 15-65 (194)
302 4a0z_A Transcription factor FA 57.9 9.7 0.00033 35.4 4.6 36 448-486 12-48 (190)
303 3oou_A LIN2118 protein; protei 57.9 16 0.00056 29.8 5.6 33 453-488 13-45 (108)
304 3plo_X DNA-invertase; resolvas 57.8 2.1 7.3E-05 39.4 0.0 34 452-489 150-183 (193)
305 2h8r_A Hepatocyte nuclear fact 57.6 9.9 0.00034 36.4 4.6 25 463-487 43-67 (221)
306 3mn2_A Probable ARAC family tr 57.4 16 0.00055 29.7 5.4 33 453-488 10-42 (108)
307 1j1v_A Chromosomal replication 57.4 23 0.00079 29.1 6.3 30 463-492 45-75 (94)
308 2fbk_A Transcriptional regulat 57.4 8.5 0.00029 34.4 4.0 44 445-488 66-110 (181)
309 3bdn_A Lambda repressor; repre 57.2 7.3 0.00025 36.4 3.7 26 462-487 28-53 (236)
310 2k40_A Homeobox expressed in E 57.0 18 0.00061 27.3 5.2 50 445-494 7-58 (67)
311 3oio_A Transcriptional regulat 57.0 30 0.001 28.4 7.1 27 462-488 21-47 (113)
312 1z7u_A Hypothetical protein EF 56.9 14 0.00048 30.7 5.0 45 439-487 13-59 (112)
313 2p5t_A Putative transcriptiona 56.8 2.3 7.8E-05 37.9 0.0 26 462-487 12-37 (158)
314 2bnm_A Epoxidase; oxidoreducta 56.7 9 0.00031 34.7 4.1 25 463-487 22-46 (198)
315 1y9q_A Transcriptional regulat 56.7 8.8 0.0003 34.7 4.0 25 463-487 23-47 (192)
316 2pg4_A Uncharacterized protein 56.5 12 0.0004 30.0 4.3 26 463-488 29-55 (95)
317 1k61_A Mating-type protein alp 56.0 16 0.00053 27.0 4.6 50 445-494 4-58 (60)
318 3neu_A LIN1836 protein; struct 55.6 24 0.00081 30.1 6.4 27 463-493 35-62 (125)
319 2hwv_A DNA-binding response re 55.5 27 0.00091 29.6 6.6 49 445-493 43-96 (121)
320 3sxy_A Transcriptional regulat 55.2 12 0.00043 34.6 4.9 39 451-494 23-61 (218)
321 1fjl_A Paired protein; DNA-bin 55.2 20 0.00068 28.2 5.4 52 445-496 24-77 (81)
322 1b72_A Protein (homeobox prote 55.2 17 0.00058 29.8 5.1 53 444-496 39-93 (97)
323 3kcc_A Catabolite gene activat 55.0 10 0.00035 35.8 4.3 27 464-494 217-243 (260)
324 1hw1_A FADR, fatty acid metabo 54.6 22 0.00077 33.1 6.6 28 462-493 28-56 (239)
325 1j9i_A GPNU1 DBD;, terminase s 54.4 5.9 0.0002 30.2 2.0 24 465-488 3-26 (68)
326 1akh_A Protein (mating-type pr 54.4 11 0.00038 27.9 3.6 47 445-491 11-59 (61)
327 1puf_A HOX-1.7, homeobox prote 54.3 20 0.00069 27.9 5.3 53 445-497 19-73 (77)
328 2yu3_A DNA-directed RNA polyme 54.3 20 0.00067 29.8 5.4 43 444-486 33-75 (95)
329 3rkq_A Homeobox protein NKX-2. 54.2 16 0.00056 26.4 4.5 48 445-492 8-57 (58)
330 3hrs_A Metalloregulator SCAR; 54.1 13 0.00045 34.7 4.9 26 462-487 18-43 (214)
331 2k02_A Ferrous iron transport 54.1 8.1 0.00028 31.6 2.9 25 463-487 15-39 (87)
332 1vz0_A PARB, chromosome partit 54.0 24 0.00081 33.6 6.7 42 444-487 116-157 (230)
333 3oio_A Transcriptional regulat 53.9 88 0.003 25.4 10.2 35 355-389 11-46 (113)
334 1ftt_A TTF-1 HD, thyroid trans 53.7 18 0.00061 27.5 4.7 51 445-495 8-60 (68)
335 3rkx_A Biotin-[acetyl-COA-carb 53.4 12 0.00039 37.7 4.6 41 448-488 3-43 (323)
336 2k4j_A Putative transcriptiona 53.4 21 0.00072 30.0 5.6 50 445-494 41-95 (115)
337 2ek5_A Predicted transcription 53.3 22 0.00077 30.6 5.9 27 463-493 26-53 (129)
338 2kfs_A Conserved hypothetical 52.8 7.2 0.00025 35.2 2.6 23 465-487 32-54 (148)
339 1bia_A BIRA bifunctional prote 52.5 18 0.00062 36.0 5.9 41 446-488 3-43 (321)
340 2lk2_A Homeobox protein TGIF1; 52.2 16 0.00056 30.0 4.4 53 445-497 11-68 (89)
341 4bbr_M Transcription initiatio 52.1 34 0.0012 34.6 7.9 189 274-499 130-327 (345)
342 3nrv_A Putative transcriptiona 52.1 59 0.002 27.2 8.5 75 305-390 3-78 (148)
343 2y75_A HTH-type transcriptiona 52.1 19 0.00066 30.5 5.2 25 462-486 24-48 (129)
344 3eco_A MEPR; mutlidrug efflux 52.1 99 0.0034 25.5 10.0 64 320-390 7-71 (139)
345 1p4x_A Staphylococcal accessor 51.9 18 0.00061 34.9 5.5 44 445-488 155-198 (250)
346 2bgc_A PRFA; bacterial infecti 51.6 9.7 0.00033 35.2 3.5 27 464-494 169-196 (238)
347 2vz4_A Tipal, HTH-type transcr 51.5 8.7 0.0003 32.1 2.8 26 464-489 1-26 (108)
348 2ovg_A Phage lambda CRO; trans 51.4 12 0.00042 28.7 3.4 20 466-485 15-34 (66)
349 1uhs_A HOP, homeodomain only p 51.2 25 0.00087 26.9 5.3 52 445-496 7-61 (72)
350 2dms_A Homeobox protein OTX2; 51.1 15 0.00051 28.9 4.0 51 445-495 13-65 (80)
351 2k9l_A RNA polymerase sigma fa 51.0 32 0.0011 26.9 6.0 49 432-484 16-68 (76)
352 3fm5_A Transcriptional regulat 51.0 1.1E+02 0.0038 25.7 10.7 65 319-390 14-78 (150)
353 2ofy_A Putative XRE-family tra 50.8 10 0.00034 29.5 3.0 34 466-499 29-67 (86)
354 3fx3_A Cyclic nucleotide-bindi 50.8 9.2 0.00032 35.1 3.2 23 464-486 178-200 (237)
355 3mky_B Protein SOPB; partition 50.5 25 0.00085 32.9 6.0 43 445-488 23-66 (189)
356 2f2e_A PA1607; transcription f 50.5 19 0.00066 31.5 5.1 26 462-487 35-60 (146)
357 2da3_A Alpha-fetoprotein enhan 50.4 9.2 0.00031 29.9 2.6 49 446-494 24-74 (80)
358 3rqi_A Response regulator prot 50.2 12 0.00041 33.1 3.7 39 445-485 139-177 (184)
359 2dn0_A Zinc fingers and homeob 49.9 13 0.00043 29.0 3.4 50 445-494 14-65 (76)
360 3rjp_A COVR; winged helix-turn 49.9 34 0.0012 27.2 6.1 49 445-493 22-75 (96)
361 2k9s_A Arabinose operon regula 49.6 22 0.00075 28.9 5.0 26 463-488 19-44 (107)
362 1zs4_A Regulatory protein CII; 49.6 21 0.00071 29.0 4.6 36 464-499 24-59 (83)
363 2obp_A Putative DNA-binding pr 49.4 26 0.00089 29.1 5.4 43 445-487 13-59 (96)
364 1stz_A Heat-inducible transcri 49.2 19 0.00065 36.4 5.4 41 446-486 15-60 (338)
365 2h09_A Transcriptional regulat 49.1 19 0.00064 31.2 4.8 25 463-487 53-77 (155)
366 4ich_A Transcriptional regulat 49.1 12 0.00041 36.2 3.9 24 462-485 138-161 (311)
367 3deu_A Transcriptional regulat 48.8 1.3E+02 0.0046 26.0 10.5 65 319-390 28-92 (166)
368 3ihu_A Transcriptional regulat 48.8 26 0.00088 32.5 5.9 38 451-493 27-64 (222)
369 3egq_A TETR family transcripti 48.7 18 0.0006 30.9 4.5 24 462-485 22-45 (170)
370 2k27_A Paired box protein PAX- 48.7 35 0.0012 29.8 6.5 24 367-390 42-65 (159)
371 2hi3_A Homeodomain-only protei 48.0 29 0.001 26.7 5.2 52 445-496 8-62 (73)
372 3knw_A Putative transcriptiona 48.0 1.1E+02 0.0036 26.6 9.8 74 237-310 33-107 (212)
373 2dmt_A Homeobox protein BARH-l 48.0 14 0.00047 29.2 3.3 50 445-494 23-74 (80)
374 3oop_A LIN2960 protein; protei 47.9 1.1E+02 0.0039 25.3 9.6 63 320-390 13-75 (143)
375 1y6u_A XIS, excisionase from t 47.9 10 0.00036 29.6 2.5 24 464-487 16-39 (70)
376 2hs5_A Putative transcriptiona 47.9 29 0.001 32.7 6.3 38 451-493 39-76 (239)
377 3c7j_A Transcriptional regulat 47.5 16 0.00055 34.6 4.4 28 462-493 47-74 (237)
378 1ntc_A Protein (nitrogen regul 47.4 10 0.00035 30.7 2.5 38 447-486 49-86 (91)
379 2k9s_A Arabinose operon regula 47.4 1.1E+02 0.0037 24.6 9.6 25 365-389 19-43 (107)
380 2di3_A Bacterial regulatory pr 47.2 35 0.0012 31.9 6.7 39 451-494 15-54 (239)
381 2dmp_A Zinc fingers and homeob 47.1 20 0.00068 29.0 4.3 51 444-494 18-70 (89)
382 3by6_A Predicted transcription 46.8 12 0.00043 32.0 3.1 27 463-493 33-60 (126)
383 4dyq_A Gene 1 protein; GP1, oc 46.5 25 0.00086 30.7 5.1 40 446-488 13-53 (140)
384 2da2_A Alpha-fetoprotein enhan 46.5 13 0.00044 28.4 2.9 50 445-494 13-64 (70)
385 2pmu_A Response regulator PHOP 46.4 27 0.00094 28.8 5.2 49 445-493 34-87 (110)
386 2r5y_A Homeotic protein sex co 46.4 24 0.00083 28.2 4.7 51 444-494 33-85 (88)
387 1gxq_A PHOB, phosphate regulon 46.3 32 0.0011 28.1 5.5 49 445-493 31-84 (106)
388 1b8i_A Ultrabithorax, protein 46.3 21 0.00073 28.1 4.2 52 444-495 25-78 (81)
389 3f8m_A GNTR-family protein tra 46.2 31 0.0011 32.9 6.2 27 463-493 34-61 (248)
390 2jrt_A Uncharacterized protein 45.8 33 0.0011 28.3 5.5 40 446-488 33-73 (95)
391 1umq_A Photosynthetic apparatu 45.1 16 0.00055 29.3 3.3 22 465-486 55-76 (81)
392 2da5_A Zinc fingers and homeob 45.1 19 0.00066 28.0 3.7 50 445-494 13-64 (75)
393 1bl0_A Protein (multiple antib 45.0 41 0.0014 28.3 6.2 27 462-488 25-51 (129)
394 2qlz_A Transcription factor PF 44.5 24 0.00082 33.8 5.1 26 462-487 176-201 (232)
395 1v4r_A Transcriptional repress 44.2 8.5 0.00029 31.4 1.6 23 463-485 33-56 (102)
396 3mkl_A HTH-type transcriptiona 44.1 24 0.00081 29.4 4.5 26 462-487 21-46 (120)
397 2k4b_A Transcriptional regulat 44.0 7 0.00024 32.5 1.0 44 444-489 31-78 (99)
398 2p4w_A Transcriptional regulat 43.7 21 0.00072 33.3 4.4 38 447-487 14-51 (202)
399 3mn2_A Probable ARAC family tr 43.7 1.2E+02 0.0042 24.2 11.3 27 363-389 15-41 (108)
400 1iuf_A Centromere ABP1 protein 43.6 13 0.00043 32.7 2.7 44 444-488 10-60 (144)
401 1opc_A OMPR, OMPRC; transcript 43.5 19 0.00066 29.6 3.7 49 445-493 31-84 (110)
402 2cra_A Homeobox protein HOX-B1 43.4 12 0.00041 28.6 2.3 50 445-494 13-64 (70)
403 3dn7_A Cyclic nucleotide bindi 43.3 10 0.00035 33.6 2.1 25 463-487 167-191 (194)
404 1xwr_A Regulatory protein CII; 43.2 25 0.00086 29.3 4.3 36 463-498 22-57 (97)
405 2k9m_A RNA polymerase sigma fa 43.1 63 0.0022 28.1 7.1 41 445-485 16-60 (130)
406 3e6m_A MARR family transcripti 43.0 1.4E+02 0.0046 25.5 9.5 64 319-390 28-91 (161)
407 3eup_A Transcriptional regulat 42.9 83 0.0028 27.0 8.1 73 238-310 31-103 (204)
408 1l9z_H Sigma factor SIGA; heli 42.6 1.6E+02 0.0054 30.8 11.4 26 365-390 394-419 (438)
409 1r8d_A Transcription activator 42.6 11 0.00039 31.4 2.1 24 465-488 3-26 (109)
410 2m0c_A Homeobox protein arista 42.2 25 0.00087 26.9 4.0 50 445-494 15-66 (75)
411 3neu_A LIN1836 protein; struct 42.1 1.4E+02 0.0048 25.1 9.2 27 365-391 36-62 (125)
412 2djn_A Homeobox protein DLX-5; 41.9 13 0.00045 28.4 2.2 49 445-493 13-63 (70)
413 2ly9_A Zinc fingers and homeob 41.9 19 0.00065 27.7 3.2 50 445-494 12-63 (74)
414 1mnm_C Protein (MAT alpha-2 tr 41.8 26 0.00088 28.0 4.1 50 444-493 32-86 (87)
415 3eet_A Putative GNTR-family tr 41.8 51 0.0017 31.9 7.0 27 463-493 51-78 (272)
416 3hot_A Transposable element ma 41.7 1.2E+02 0.004 29.4 9.9 25 463-487 85-109 (345)
417 1bw5_A ISL-1HD, insulin gene e 41.6 15 0.0005 27.7 2.5 49 445-493 9-59 (66)
418 3oou_A LIN2118 protein; protei 41.3 1.4E+02 0.0047 24.0 11.7 27 363-389 18-44 (108)
419 2vi6_A Homeobox protein nanog; 41.2 16 0.00055 27.1 2.6 49 445-493 9-59 (62)
420 3hot_A Transposable element ma 41.1 23 0.00077 34.7 4.4 36 450-488 11-53 (345)
421 3pvv_A Chromosomal replication 41.0 59 0.002 27.1 6.3 31 463-493 49-79 (101)
422 4aik_A Transcriptional regulat 40.8 1.7E+02 0.0059 25.0 11.4 29 362-390 42-70 (151)
423 2jml_A DNA binding domain/tran 40.8 12 0.00042 29.4 2.0 23 465-487 6-28 (81)
424 2wv0_A YVOA, HTH-type transcri 40.6 56 0.0019 30.9 7.0 27 463-493 32-59 (243)
425 3mkl_A HTH-type transcriptiona 40.6 1.5E+02 0.0052 24.3 10.0 26 364-389 21-46 (120)
426 3qbm_A TETR transcriptional re 40.5 1.7E+02 0.0058 24.8 10.7 76 234-309 22-98 (199)
427 3rd3_A Probable transcriptiona 40.0 1.7E+02 0.0059 24.7 10.5 80 235-314 26-107 (197)
428 2l7z_A Homeobox protein HOX-A1 39.9 19 0.00065 27.8 2.9 51 445-495 13-65 (73)
429 1z6r_A MLC protein; transcript 39.9 37 0.0013 34.4 6.0 38 451-490 19-56 (406)
430 3iuo_A ATP-dependent DNA helic 39.7 42 0.0014 28.7 5.4 35 451-489 23-57 (122)
431 3nar_A ZHX1, zinc fingers and 39.7 24 0.00083 28.8 3.7 50 445-494 31-82 (96)
432 2fjr_A Repressor protein CI; g 39.6 18 0.00062 32.4 3.2 22 466-487 22-43 (189)
433 3k2z_A LEXA repressor; winged 39.4 53 0.0018 29.9 6.4 31 360-390 18-48 (196)
434 1le8_B Mating-type protein alp 39.2 26 0.00091 27.7 3.8 51 445-495 8-63 (83)
435 3zq7_A KDP operon transcriptio 39.1 45 0.0016 26.8 5.3 49 445-493 28-81 (102)
436 3edp_A LIN2111 protein; APC883 39.1 52 0.0018 31.0 6.5 27 463-493 31-58 (236)
437 3bwg_A Uncharacterized HTH-typ 38.5 26 0.00088 33.2 4.2 28 463-494 27-55 (239)
438 2fsw_A PG_0823 protein; alpha- 38.4 26 0.00087 28.7 3.7 26 462-487 36-62 (107)
439 1tc3_C Protein (TC3 transposas 38.4 74 0.0025 20.9 5.7 42 202-260 2-43 (51)
440 2kt0_A Nanog, homeobox protein 38.3 16 0.00055 28.9 2.3 49 445-493 28-78 (84)
441 3qkx_A Uncharacterized HTH-typ 38.2 1.5E+02 0.0051 24.9 9.0 72 235-306 24-96 (188)
442 3lwf_A LIN1550 protein, putati 37.9 53 0.0018 29.4 6.0 25 463-487 43-67 (159)
443 2zcm_A Biofilm operon icaabcd 37.9 28 0.00094 30.3 4.1 27 457-485 22-48 (192)
444 3pas_A TETR family transcripti 37.4 1.4E+02 0.0047 25.3 8.6 71 238-308 28-98 (195)
445 3vpr_A Transcriptional regulat 37.3 33 0.0011 29.8 4.5 24 462-485 21-44 (190)
446 2jzy_A Transcriptional regulat 37.3 31 0.001 28.7 4.0 49 445-493 28-81 (112)
447 3a01_A Homeodomain-containing 37.2 34 0.0012 27.8 4.2 53 445-497 23-77 (93)
448 3bqz_B HTH-type transcriptiona 37.0 29 0.001 29.9 4.1 29 454-484 14-42 (194)
449 1du6_A PBX1, homeobox protein 37.0 9.6 0.00033 28.6 0.7 49 445-493 9-62 (64)
450 2oa4_A SIR5; structure, struct 36.8 30 0.001 29.1 3.8 33 453-488 42-74 (101)
451 1eto_A FIS, factor for inversi 36.7 31 0.001 28.6 3.9 36 449-486 58-93 (98)
452 3dcf_A Transcriptional regulat 36.5 2.1E+02 0.0071 24.7 10.6 71 238-308 51-121 (218)
453 1yyv_A Putative transcriptiona 36.4 33 0.0011 29.5 4.2 26 462-487 46-72 (131)
454 1hsj_A Fusion protein consisti 36.3 33 0.0011 35.3 5.0 43 445-487 401-443 (487)
455 3bro_A Transcriptional regulat 36.2 1.8E+02 0.006 23.8 11.2 64 320-390 10-74 (141)
456 2fq4_A Transcriptional regulat 35.8 33 0.0011 30.0 4.3 27 457-485 27-53 (192)
457 2v57_A TETR family transcripti 35.7 1.8E+02 0.0062 24.6 9.2 60 237-296 31-90 (190)
458 2heo_A Z-DNA binding protein 1 35.5 45 0.0015 25.2 4.4 29 362-390 21-49 (67)
459 3knw_A Putative transcriptiona 35.5 34 0.0012 29.9 4.3 24 462-485 32-55 (212)
460 2eh3_A Transcriptional regulat 35.4 35 0.0012 29.4 4.3 24 462-485 20-43 (179)
461 2e19_A Transcription factor 8; 35.3 43 0.0015 25.3 4.2 42 448-489 12-55 (64)
462 3k0l_A Repressor protein; heli 35.3 1.7E+02 0.0056 25.0 8.8 65 318-390 20-84 (162)
463 3ppb_A Putative TETR family tr 35.2 2E+02 0.0069 24.2 10.7 72 237-308 28-99 (195)
464 3df8_A Possible HXLR family tr 35.1 36 0.0012 28.2 4.1 25 463-487 39-66 (111)
465 3lwj_A Putative TETR-family tr 34.8 35 0.0012 29.7 4.3 27 457-485 27-53 (202)
466 3qkx_A Uncharacterized HTH-typ 34.7 35 0.0012 29.1 4.2 23 462-484 26-48 (188)
467 3kkc_A TETR family transcripti 34.5 26 0.00088 29.9 3.2 23 462-484 30-52 (177)
468 3t8r_A Staphylococcus aureus C 34.5 45 0.0015 29.1 4.8 25 463-487 27-51 (143)
469 3b81_A Transcriptional regulat 34.4 31 0.0011 30.0 3.8 26 457-484 26-51 (203)
470 2qtq_A Transcriptional regulat 34.4 40 0.0014 29.4 4.6 30 454-485 28-57 (213)
471 2fa5_A Transcriptional regulat 34.2 2.1E+02 0.0072 24.1 10.4 25 366-390 63-87 (162)
472 3by6_A Predicted transcription 34.2 37 0.0013 28.9 4.2 26 365-390 34-59 (126)
473 1ylf_A RRF2 family protein; st 34.1 58 0.002 28.3 5.6 25 463-487 29-53 (149)
474 1ku3_A Sigma factor SIGA; heli 34.1 41 0.0014 25.4 4.0 26 365-390 29-54 (73)
475 1sig_A Sigma70, RNA polymerase 34.1 14 0.00048 36.9 1.6 42 205-276 1-42 (339)
476 3dew_A Transcriptional regulat 34.1 30 0.001 29.9 3.7 24 462-485 26-49 (206)
477 1lva_A Selenocysteine-specific 34.0 3.1E+02 0.011 26.0 14.5 45 354-398 144-192 (258)
478 2cuf_A FLJ21616 protein; homeo 33.8 48 0.0016 26.9 4.6 53 445-497 13-82 (95)
479 3bhq_A Transcriptional regulat 33.6 40 0.0014 29.9 4.5 30 454-485 24-53 (211)
480 3nxc_A HTH-type protein SLMA; 33.6 1.4E+02 0.0047 25.8 8.1 71 237-307 44-114 (212)
481 2ecb_A Zinc fingers and homeob 33.4 38 0.0013 27.6 3.9 50 445-494 17-68 (89)
482 3dpj_A Transcription regulator 33.4 47 0.0016 28.6 4.9 37 448-484 8-48 (194)
483 3s2w_A Transcriptional regulat 33.3 2.2E+02 0.0075 24.0 10.4 64 319-390 25-88 (159)
484 1rkt_A Protein YFIR; transcrip 33.2 32 0.0011 30.4 3.8 26 454-481 24-49 (205)
485 3on4_A Transcriptional regulat 32.9 33 0.0011 29.4 3.7 27 457-485 25-51 (191)
486 2l9r_A Homeobox protein NKX-3. 32.9 23 0.00077 27.5 2.3 48 446-493 11-60 (69)
487 3qbm_A TETR transcriptional re 32.8 34 0.0012 29.5 3.8 23 462-484 25-47 (199)
488 3g7r_A Putative transcriptiona 32.8 1.6E+02 0.0056 26.0 8.6 71 238-308 55-125 (221)
489 1u8b_A ADA polyprotein; protei 32.8 71 0.0024 26.9 5.8 26 463-488 92-117 (133)
490 3lhq_A Acrab operon repressor 32.7 40 0.0014 29.4 4.3 29 454-484 26-54 (220)
491 3on4_A Transcriptional regulat 32.7 2.1E+02 0.0073 24.0 9.1 63 238-300 30-93 (191)
492 3cjn_A Transcriptional regulat 32.7 2.2E+02 0.0075 24.0 9.1 25 366-390 66-90 (162)
493 2g7s_A Transcriptional regulat 32.7 34 0.0012 29.3 3.7 29 454-484 20-48 (194)
494 2d6y_A Putative TETR family re 32.6 42 0.0014 29.7 4.4 24 462-485 26-49 (202)
495 1z05_A Transcriptional regulat 32.6 42 0.0014 34.4 5.0 38 451-490 42-79 (429)
496 3vib_A MTRR; helix-turn-helix 32.5 39 0.0013 29.8 4.2 27 456-484 24-50 (210)
497 2i10_A Putative TETR transcrip 32.4 43 0.0015 29.7 4.5 28 456-485 25-52 (202)
498 1sgm_A Putative HTH-type trans 32.4 2.2E+02 0.0077 23.8 10.1 75 235-309 22-98 (191)
499 3col_A Putative transcription 32.3 1.5E+02 0.0051 25.1 8.0 72 238-309 30-103 (196)
500 4g6q_A Putative uncharacterize 32.3 45 0.0015 30.3 4.6 37 447-486 22-59 (182)
No 1
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=100.00 E-value=3.3e-50 Score=426.60 Aligned_cols=310 Identities=31% Similarity=0.495 Sum_probs=272.5
Q ss_pred hhHHHHHHhhcccCCCCHHHHHHHHHHHHcCCccchhHH------------------HHHHhhCCCCchHHHHH------
Q 010521 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKL------------------RLKERLGCEPSMEQLAA------ 246 (508)
Q Consensus 191 ~~~~~yl~~i~~~~lLt~~EE~eL~~~ik~Gd~l~~~~~------------------~l~~~~g~~p~~~~~a~------ 246 (508)
|.++.||++|+++|+||++||++|+++++.|..+++... +.....++.|+.++|+.
T Consensus 94 d~~~~Yl~ei~~~pLLt~eEE~~La~~i~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (438)
T 1l9z_H 94 DPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVEE 173 (438)
T ss_pred ChHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhHHHHHHhhhccchhhhhhhhhhhhhhcccccccccccccccchhhhh
Confidence 688999999999999999999999999999975443221 11234567888777642
Q ss_pred ------HhccChHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccCCCCCCcchhH
Q 010521 247 ------SLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTY 320 (508)
Q Consensus 247 ------~~~~s~~~L~~~l~e~~~A~e~LIe~yl~LV~sIAkrY~~~g~d~EDLiQEG~IgLirAiekFDperG~rFsTY 320 (508)
.++++..+|...+.++..|+++||..|+++|++||++|.++|.+++||+||||||||+|+++|||++|++|+||
T Consensus 174 ~~~~~~~~~~~~~eLi~~~~~d~~A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rFsTY 253 (438)
T 1l9z_H 174 VDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFSTY 253 (438)
T ss_pred hhhhhhcccchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCChHHH
Confidence 23567788999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHH-HcCCCCCHHHHHHHhC--CCHHHHHHHHHHhCcccccc
Q 010521 321 VYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLN--MSQKKVRNATEAIGKVFSLD 397 (508)
Q Consensus 321 A~~wIR~~I~~~Ird~~R~irip~~~~~~l~kir~a~~~l~-~~Gr~Pt~eEIA~~Lg--is~e~v~~~l~~~~~~~SLD 397 (508)
|+||||+.|.++|++++|.+++|+|+.+.+++++++++.+. ..|+.|+.++||+.+| +++++|..++.....++|+|
T Consensus 254 A~~wIR~~I~~~i~~~~R~irlp~~~~~~l~~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~~~~~~~~~~SLd 333 (438)
T 1l9z_H 254 ATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVSLE 333 (438)
T ss_pred HHHHHHHHHHHHHHHhcchhccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhcccccccc
Confidence 99999999999999999999999999999999999988874 7899999999999999 99999999998888899999
Q ss_pred ccCCCCCCCCCCCccccccccccCCCCccchHHHHHHHHHHHHHHHccCCHHHHHHHhHHhccC-CCCCCHHHHHHHHCC
Q 010521 398 REAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLD-KECLTWEDISKRIGL 476 (508)
Q Consensus 398 ~~~~~~~~~~~~~~l~d~i~d~~~e~~Pe~~ve~~el~e~L~~~L~~~Lp~rER~VI~LryGLd-~eg~TleEIAe~LgI 476 (508)
.++ +++++..+.+++++.. ..+|++.+...+....|..+| +.||++||.||.+||||+ ++++|++|||+.|||
T Consensus 334 ~~~----~~d~d~~l~d~l~d~~-~~~pee~~~~~~~~~~L~~aL-~~L~ereR~VI~LRygL~~~e~~TleEIAe~LgI 407 (438)
T 1l9z_H 334 TPI----GDEKDSFYGDFIPDEN-LPSPVEAAAQSLLSEELEKAL-SKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGV 407 (438)
T ss_pred ccc----ccccchhhhhhhcccc-cCCHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCc
Confidence 874 2223345666776653 246888888888889999999 899999999999999984 579999999999999
Q ss_pred CHHHHHHHHHHHHHHHH-HHHHHhhHHHhhh
Q 010521 477 SRERVRQVGLVALEKLK-HAARKKKMEAMLV 506 (508)
Q Consensus 477 S~erVrqi~~rALkKLR-~~L~~~~l~~~l~ 506 (508)
|++||+|++++|++||| +.+....++.||.
T Consensus 408 S~erVRqi~~RAlkKLR~~~~~~~~l~~yl~ 438 (438)
T 1l9z_H 408 TRERIRQIENKALRKLKYHESRTRKLRDFLE 438 (438)
T ss_pred CHHHHHHHHHHHHHHHHHhHhhHHHHHHhhC
Confidence 99999999999999999 8888888999873
No 2
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=100.00 E-value=9.6e-50 Score=422.73 Aligned_cols=306 Identities=32% Similarity=0.526 Sum_probs=264.0
Q ss_pred hhHHHHHHhhcccCCCCHHHHHHHHHHHHcCCccchhHHHHHHh---------------------hCCCCchHH------
Q 010521 191 NRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKER---------------------LGCEPSMEQ------ 243 (508)
Q Consensus 191 ~~~~~yl~~i~~~~lLt~~EE~eL~~~ik~Gd~l~~~~~~l~~~---------------------~g~~p~~~~------ 243 (508)
+++++||++|+++|+||++||++|+++++.|+.+.. .|... .++.|+.++
T Consensus 79 d~~~~Yl~ei~~~plLt~eEE~~La~ri~~g~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (423)
T 2a6h_F 79 DPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIK---KLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKT 155 (423)
T ss_dssp HHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHH---HHHHHHCCCHHHHHHHHHHHHHCCHHHHHTTSCSSSCTTHH
T ss_pred cHHHHHHHHhcccCCCCHHHHHHHHHHHHhchhHHH---HHHHhhccchhhhhhhHhhhhhhhhhcccccchhhhhhhhh
Confidence 689999999999999999999999999999975332 22222 345555333
Q ss_pred ---HH---HHhccChHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccCCCCCCcc
Q 010521 244 ---LA---ASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKI 317 (508)
Q Consensus 244 ---~a---~~~~~s~~~L~~~l~e~~~A~e~LIe~yl~LV~sIAkrY~~~g~d~EDLiQEG~IgLirAiekFDperG~rF 317 (508)
|+ .+++++..+|...+.++..|+++||..|+++|++||++|.++|.+++||+||||+|||+|+++|||.+|++|
T Consensus 156 ~~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~igL~kav~kFd~~~g~~F 235 (423)
T 2a6h_F 156 VEEIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKF 235 (423)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHHHHHHHHHHHCCTTSCCCH
T ss_pred hhhhhhhhhcccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCH
Confidence 33 235678889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHH-HcCCCCCHHHHHHHhC--CCHHHHHHHHHHhCccc
Q 010521 318 STYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLN--MSQKKVRNATEAIGKVF 394 (508)
Q Consensus 318 sTYA~~wIR~~I~~~Ird~~R~irip~~~~~~l~kir~a~~~l~-~~Gr~Pt~eEIA~~Lg--is~e~v~~~l~~~~~~~ 394 (508)
+|||+||||+.|.++|++++|++++|+|+.+.+++++++.+.+. ..|+.|+.++||+.+| +++++|..++.....++
T Consensus 236 stYa~~wIr~~i~~~i~~~~r~ir~p~~~~~~~~~lrr~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v~~~~~~~~~~~ 315 (423)
T 2a6h_F 236 STYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPV 315 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHHHHHHHSCCE
T ss_pred HHHHHHHHHHHHHHHHHHccceeeccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccCCc
Confidence 99999999999999999999999999999999999999988774 7899999999999999 99999999999889999
Q ss_pred cccccCCCCCCCCCCCccccccccccCCCCccchHHHHHHHHHHHHHHHccCCHHHHHHHhHHhccC-CCCCCHHHHHHH
Q 010521 395 SLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLD-KECLTWEDISKR 473 (508)
Q Consensus 395 SLD~~~~~~~~~~~~~~l~d~i~d~~~e~~Pe~~ve~~el~e~L~~~L~~~Lp~rER~VI~LryGLd-~eg~TleEIAe~ 473 (508)
|+|.++ +++++..+.+++++.. ..+|++.+...+....|..+| ..||++||.||.+||||+ ++++|++|||+.
T Consensus 316 Sld~~~----~~~~~~~l~d~l~d~~-~~~pe~~~~~~~~~~~L~~aL-~~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~ 389 (423)
T 2a6h_F 316 SLETPI----GDEKDSFYGDFIPDEH-LPSPVDAATQSLLSEELEKAL-SKLSEREAMVLKLRKGLIDGREHTLEEVGAF 389 (423)
T ss_dssp ESSCBC----SSSSSCBGGGSSCCSS-SCCHHHHHHHHHHHHHHHHHH-HSSCHHHHHHHHHHHHTTCC-----CHHHHS
T ss_pred cccccc----CCCCccchhhhhcccc-CCCHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHhccCCCCCCCHHHHHHH
Confidence 999874 2223345777777654 247888888888889999999 899999999999999984 579999999999
Q ss_pred HCCCHHHHHHHHHHHHHHHH-HHHHHhhHHHhh
Q 010521 474 IGLSRERVRQVGLVALEKLK-HAARKKKMEAML 505 (508)
Q Consensus 474 LgIS~erVrqi~~rALkKLR-~~L~~~~l~~~l 505 (508)
||||++||+|++.+|++||| +.+....++.||
T Consensus 390 lgiS~erVrqi~~rAl~kLR~~~~~~~~l~~~l 422 (423)
T 2a6h_F 390 FGVTRERIRQIENKALRKLKYHESRTRKLRDFL 422 (423)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHTTSSSSCC
T ss_pred HCcCHHHHHHHHHHHHHHHHhhhhhhHHHHHhh
Confidence 99999999999999999999 788877777776
No 3
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=100.00 E-value=2.7e-40 Score=364.99 Aligned_cols=270 Identities=29% Similarity=0.550 Sum_probs=235.7
Q ss_pred HHHHHhhcccCCCCHHHHHHHHHHHHcCCccchhHHHHHHhhCCCCchHHHHHHhccChHHHHHhhhhhHHHHHHHHHHH
Q 010521 194 KGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSN 273 (508)
Q Consensus 194 ~~yl~~i~~~~lLt~~EE~eL~~~ik~Gd~l~~~~~~l~~~~g~~p~~~~~a~~~~~s~~~L~~~l~e~~~A~e~LIe~y 273 (508)
+.-|..|.....++..++.+|+.+++.||. ....|++.||..|
T Consensus 341 q~kL~~ie~~~~~~~~~~~~Li~~~~~Gd~-------------------------------------~A~~A~~~L~~~y 383 (613)
T 3iyd_F 341 LQKLQQIEEETGLTIEQVKDINRRMSIGEA-------------------------------------KARRAKKEMVEAN 383 (613)
T ss_dssp HHHHHHHHHHHTSCTTTHHHHHHTHHHHHH-------------------------------------HHHHHHTTTTTTT
T ss_pred HHHHHHHHHHhCCChHHHHHHHHHHHHHhh-------------------------------------hhHHHHHHHHHHH
Confidence 444555666666666677777777777775 0012499999999
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccCCCCCCcchhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHH
Q 010521 274 VRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI 353 (508)
Q Consensus 274 l~LV~sIAkrY~~~g~d~EDLiQEG~IgLirAiekFDperG~rFsTYA~~wIR~~I~~~Ird~~R~irip~~~~~~l~ki 353 (508)
+++|+++|++|++++.+++||+||||+|||+++++||+.+|++|+||++||||++|.++++++.|++++|.|+.+.++++
T Consensus 384 ~~~v~~ia~r~~~~~~~aeDlvQE~fi~l~~a~~~fd~~~g~~Fstyl~~~irn~i~~~lr~~~r~~rip~~~~~~~~k~ 463 (613)
T 3iyd_F 384 LRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKL 463 (613)
T ss_dssp THHHHHGGGSSSTTSSCSTTTTHHHHHHHHHHTTSCCTTSSSCSTTTHHHHHHHHHHHHTTTSCSSSCCCSHHHHTTTTT
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCccccCcHHHHHHHHHHHHHHHHHHhcCcceeCcHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHcCCCCCHHHHHHHhCCCHHHHHHHHHHhCccccccccCCCCCCCCCCCccccccccccCCCCccchHHHH
Q 010521 354 RNAKLRL-EEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDW 432 (508)
Q Consensus 354 r~a~~~l-~~~Gr~Pt~eEIA~~Lgis~e~v~~~l~~~~~~~SLD~~~~~~~~~~~~~~l~d~i~d~~~e~~Pe~~ve~~ 432 (508)
+++...+ ++.|++|+++|||+.+|+++++++.++.....++|++.++ +++++..+.+++.+.. ..+|++.+...
T Consensus 464 ~r~~~~l~~~~gr~pt~eela~~l~~~~~~v~~~~~~~~~~~sld~~~----~~~~~~~l~d~i~d~~-~~~p~~~~~~~ 538 (613)
T 3iyd_F 464 NRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPI----GDDEDSHLGDFIEDTT-LELPLDSATTE 538 (613)
T ss_dssp TTTTTTTTTTTCSCCCTTTTTTTSSCCSSHHHHHHHHSCCCCCSSCCC----SSSSSCCGGGSCCCSS-SCCHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhccCCcccCCCC----CCCCCccHHHHhcCCC-CCCHHHHHHHH
Confidence 8887777 4789999999999999999999999999999999999874 2334446777777654 34788888888
Q ss_pred HHHHHHHHHHHccCCHHHHHHHhHHhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhHHHhhh
Q 010521 433 ALKDEVNKLIIVTLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAMLV 506 (508)
Q Consensus 433 el~e~L~~~L~~~Lp~rER~VI~LryGLd~-eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~~~~l~~~l~ 506 (508)
++...|..+| ..||+++|.||.|+||++. +++|++|||+.||||++||++++++|+++||+.+....++.||+
T Consensus 539 e~~~~l~~aL-~~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~kLR~~~~~~~l~~~l~ 612 (613)
T 3iyd_F 539 SLRAATHDVL-AGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 612 (613)
T ss_dssp TTSSSHHHHT-TSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTTTTSCSSSCSSTTCC-
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHHhhCcchhhHHHHHhc
Confidence 8888899999 9999999999999998764 89999999999999999999999999999999998888888875
No 4
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=100.00 E-value=1e-33 Score=279.84 Aligned_cols=208 Identities=32% Similarity=0.527 Sum_probs=131.2
Q ss_pred hhhhHHHHHHhhcccCCCCHHHHHHHHHHHHcCCccchhHHH-------H--HH-----------------hhCCCCchH
Q 010521 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLR-------L--KE-----------------RLGCEPSME 242 (508)
Q Consensus 189 ~~~~~~~yl~~i~~~~lLt~~EE~eL~~~ik~Gd~l~~~~~~-------l--~~-----------------~~g~~p~~~ 242 (508)
..|++++||++|+++|+||++||++|+++|+.|....+.... + +. ..+.+|+..
T Consensus 5 ~~d~~~~yl~~i~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~~ 84 (245)
T 3ugo_A 5 TSDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTV 84 (245)
T ss_dssp CCHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCCCTTCCCCCCHHHH
T ss_pred CCCcHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcccccccccccchhH
Confidence 347999999999999999999999999999999863322111 0 00 024788999
Q ss_pred HHHHHhccChH----HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccCCCCCCcch
Q 010521 243 QLAASLRISRP----ELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKIS 318 (508)
Q Consensus 243 ~~a~~~~~s~~----~L~~~l~e~~~A~e~LIe~yl~LV~sIAkrY~~~g~d~EDLiQEG~IgLirAiekFDperG~rFs 318 (508)
+||.+.+++.. +|.+.+.++..|+++||+.|.++|+++|++|.+++.+++||+||||+|||+++++|||++|++|+
T Consensus 85 ~~~~~~~~~~~~~~~~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~fd~~~g~~F~ 164 (245)
T 3ugo_A 85 EEVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFS 164 (245)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHH
T ss_pred HHHHHhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCcccCCcHH
Confidence 99999998754 45556778899999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHH-HcCCCCCHHHHHHHhC--CCHHHHHHHHHHhCcccc
Q 010521 319 TYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLN--MSQKKVRNATEAIGKVFS 395 (508)
Q Consensus 319 TYA~~wIR~~I~~~Ird~~R~irip~~~~~~l~kir~a~~~l~-~~Gr~Pt~eEIA~~Lg--is~e~v~~~l~~~~~~~S 395 (508)
||++||||++|.++++++.+.+++|.++.+.++++..+.+.+. ..|+.|+.+|||+.|| +|+.+|...+......+|
T Consensus 165 tya~~~ir~~i~~~ir~~~r~~r~p~~l~e~i~~l~~~~~~L~~~~~~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~ls 244 (245)
T 3ugo_A 165 TYATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVS 244 (245)
T ss_dssp HHHHHHHHHHHHHHHHHHTC------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCCCHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999998888885 6799999999999999 999999999988877776
Q ss_pred c
Q 010521 396 L 396 (508)
Q Consensus 396 L 396 (508)
|
T Consensus 245 l 245 (245)
T 3ugo_A 245 L 245 (245)
T ss_dssp -
T ss_pred C
Confidence 5
No 5
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=99.97 E-value=1.7e-29 Score=242.26 Aligned_cols=221 Identities=22% Similarity=0.338 Sum_probs=186.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc---CCCCCHHHHHHHHHHHHHHhhhccCCCCCCcchhHHHHHHHHHHHHHHHHhccc
Q 010521 263 SLAREKLVMSNVRLVMSIAQRYD---NMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRT 339 (508)
Q Consensus 263 ~~A~e~LIe~yl~LV~sIAkrY~---~~g~d~EDLiQEG~IgLirAiekFDperG~rFsTYA~~wIR~~I~~~Ird~~R~ 339 (508)
..|++.|+..|.++|+++|++|. +++.+++||+|||+++||+++++||+.+|.+|.||+++||++.+.+++++..
T Consensus 11 ~~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~-- 88 (239)
T 1rp3_A 11 QIEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLD-- 88 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSS--
T ss_pred chHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC--
Confidence 36999999999999999999998 6789999999999999999999999998889999999999999999999875
Q ss_pred ccccccHHHHHHHHHHHHHHHH-HcCCCCCHHHHHHHhCCCHHHHHHHHHHhC--ccccccccCCCCCCCCCCCcccccc
Q 010521 340 LRLPNHLHERLGLIRNAKLRLE-EKGVTPSVDRIAEYLNMSQKKVRNATEAIG--KVFSLDREAFPSLNGLPGETHHSYI 416 (508)
Q Consensus 340 irip~~~~~~l~kir~a~~~l~-~~Gr~Pt~eEIA~~Lgis~e~v~~~l~~~~--~~~SLD~~~~~~~~~~~~~~l~d~i 416 (508)
+.|.+......++.++...+. ..|+.|+.+++|+.+|++++++..++.... ...|++.+.. ++++.. .+.
T Consensus 89 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~sl~~~~~----~~~~~~-~~~- 161 (239)
T 1rp3_A 89 -FGSRQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVFR----DFARDY-SEL- 161 (239)
T ss_dssp -TTCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH-TTT-
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHhccCCCcccccccc----CCCccc-ccc-
Confidence 466666777778888888885 679999999999999999999998877652 3456665310 000011 122
Q ss_pred ccccCCCCccchHHHHHHHHHHHHHHHccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 010521 417 ADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 496 (508)
Q Consensus 417 ~d~~~e~~Pe~~ve~~el~e~L~~~L~~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L 496 (508)
++. ..+|++.+...+....|..+| ..||+++|.||.++| ++|+|++|||+.||||+++|++++++|+++||+.+
T Consensus 162 ~~~--~~~~~~~~~~~e~~~~l~~~l-~~L~~~~r~vl~l~~---~~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 162 IPS--STNVEEEVIKRELTEKVKEAV-SKLPEREKLVIQLIF---YEELPAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp GGG--SCHHHHHHHHHHHHHHHHHHH-TTSCHHHHHHHHHHH---TSCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCC--CCCHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHH---hcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 222 236777788888889999999 999999999999999 79999999999999999999999999999999988
Q ss_pred HH
Q 010521 497 RK 498 (508)
Q Consensus 497 ~~ 498 (508)
..
T Consensus 236 ~~ 237 (239)
T 1rp3_A 236 SN 237 (239)
T ss_dssp HC
T ss_pred hc
Confidence 53
No 6
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.96 E-value=3.1e-31 Score=254.22 Aligned_cols=239 Identities=31% Similarity=0.404 Sum_probs=49.3
Q ss_pred hcccCCCCHHHHHHHHHHHHcCCccchhHHHHHHhhCCCCchHHHHHHhccChHHHHHhhhhhHHHHHHHHHHHHHHHHH
Q 010521 200 VVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMS 279 (508)
Q Consensus 200 i~~~~lLt~~EE~eL~~~ik~Gd~l~~~~~~l~~~~g~~p~~~~~a~~~~~s~~~L~~~l~e~~~A~e~LIe~yl~LV~s 279 (508)
+...+.++++++.+|+.+++.||. .|++.|+..|.++|++
T Consensus 4 ~~~~~~~~~~~~~~l~~~~~~gd~----------------------------------------~a~~~l~~~~~~~v~~ 43 (243)
T 1l0o_C 4 MQGQSPIKDQEMKELIRRSQEGDQ----------------------------------------EARDEIIEKNMRLVWS 43 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCCCCCCHHHHHHHHHHHHcCCH----------------------------------------HHHHHHHHHhHHHHHH
Confidence 455677888899999999999998 9999999999999999
Q ss_pred HHHHhcCCCCCHHHHHHHHHHHHHHhhhccCCCCCCcchhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHH
Q 010521 280 IAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLR 359 (508)
Q Consensus 280 IAkrY~~~g~d~EDLiQEG~IgLirAiekFDperG~rFsTYA~~wIR~~I~~~Ird~~R~irip~~~~~~l~kir~a~~~ 359 (508)
+|++|.++..+++|++|||++++|+++++|++.+|.+|.||+++++++.+.++++++. .+++|.+......+++++...
T Consensus 44 ~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~~~d~~r~~~-~~~~~~~~~~~~~~~~~~~~~ 122 (243)
T 1l0o_C 44 VVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGEIQRFLRDDG-TVKVSRSLKEMGNKIRKAKDE 122 (243)
T ss_dssp --------------------------------------------------------CC-CCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcC-CccCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998889999999999999999999987 788999999888888888888
Q ss_pred HH-HcCCCCCHHHHHHHhCCCHHHHHHHHHHhCccccccccCCCCCCCCCCCccccccccccCCCCccchHHHHHHHHHH
Q 010521 360 LE-EKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEV 438 (508)
Q Consensus 360 l~-~~Gr~Pt~eEIA~~Lgis~e~v~~~l~~~~~~~SLD~~~~~~~~~~~~~~l~d~i~d~~~e~~Pe~~ve~~el~e~L 438 (508)
+. +.++.|+..+++..+|++.+++...+.......|++.+... ++.+..++.+.+ |++.+...+....|
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~--~~~~~~~~~~~~--------~~~~~~~~~~~~~l 192 (243)
T 1l0o_C 123 LSKTRGRAPTVTEIADHLGISPEDVVLAQEAVRLPTSIHETVYE--NDGDPITLLDQI--------ADADEASWFDKIAL 192 (243)
T ss_dssp HHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHHHC----------------------------------------------
T ss_pred HHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHhccccCccccccc--cCCcccchhhcc--------CcchhHHHHHHHHH
Confidence 85 57899999999999999999999888777667777765210 011111222222 23334445666788
Q ss_pred HHHHHccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 439 NKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 439 ~~~L~~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
..+| ..||+++|.||.++| ++|+|++|||+.||||+++|++++++|+++||
T Consensus 193 ~~~l-~~L~~~~r~vl~l~~---~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 193 KKAI-EELDERERLIVYLRY---YKDQTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp -------------------------------------------------------
T ss_pred HHHH-HhCCHHHHHHHHHHH---hcCCCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 8999 899999999999999 79999999999999999999999999999997
No 7
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.90 E-value=8.6e-23 Score=190.42 Aligned_cols=167 Identities=22% Similarity=0.239 Sum_probs=130.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccCCCCCCcchhHHHHHHHHHHHHHHHHhccccccc
Q 010521 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP 343 (508)
Q Consensus 264 ~A~e~LIe~yl~LV~sIAkrY~~~g~d~EDLiQEG~IgLirAiekFDperG~rFsTYA~~wIR~~I~~~Ird~~R~irip 343 (508)
.|++.|+..|.+.|+.+|.++.+ ..+++|++||+|+++|+++++|++.. .|.+|++.++++.+.+++++..+....
T Consensus 23 ~a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n~~~d~~R~~~~~~~~- 98 (194)
T 1or7_A 23 KAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNTAKNYLVAQGRRPPS- 98 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHHHHHHHHHTTCCTH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHHHHHHHHHHHhccCcc-
Confidence 99999999999999999999999 99999999999999999999999865 599999999999999999876542110
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHhCccccccccCCCCCCCCCCCccccccccccCCC
Q 010521 344 NHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVEN 423 (508)
Q Consensus 344 ~~~~~~l~kir~a~~~l~~~Gr~Pt~eEIA~~Lgis~e~v~~~l~~~~~~~SLD~~~~~~~~~~~~~~l~d~i~d~~~e~ 423 (508)
.++.. .. ...++.+ . .+.+. +
T Consensus 99 --------------------------~~~~~-----------~~-----~~~~~~~----------~----~~~~~---~ 119 (194)
T 1or7_A 99 --------------------------SDVDA-----------IE-----AENFESG----------G----ALKEI---S 119 (194)
T ss_dssp --------------------------HHHHH-----------HH-----HHSCCSS----------C----C--------
T ss_pred --------------------------ccccc-----------cc-----ccccccc----------c----cccCC---C
Confidence 00000 00 0001100 0 01111 2
Q ss_pred CccchHHHHHHHHHHHHHHHccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q 010521 424 NPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 497 (508)
Q Consensus 424 ~Pe~~ve~~el~e~L~~~L~~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~ 497 (508)
+|++.+...+....|..+| ..||+++|.||.|+| .+|+|++|||+.||+|.++|++++++|+++||+.+.
T Consensus 120 ~~~~~~~~~e~~~~l~~~l-~~L~~~~r~vl~l~~---~~g~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 189 (194)
T 1or7_A 120 NPENLMLSEELRQIVFRTI-ESLPEDLRMAITLRE---LDGLSYEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 189 (194)
T ss_dssp ---CEEEHHHHHHHHHHHH-HHSCHHHHHHHHHHH---TTCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHC
T ss_pred ChHHHHHHHHHHHHHHHHH-HhCCHHHHHHhHHHH---HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3444445566677888999 899999999999999 799999999999999999999999999999999875
No 8
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.89 E-value=1.7e-23 Score=193.94 Aligned_cols=157 Identities=16% Similarity=0.192 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccCCCCCCcchhHHHHHHHHHHHHHHHHhccccccc
Q 010521 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLP 343 (508)
Q Consensus 264 ~A~e~LIe~yl~LV~sIAkrY~~~g~d~EDLiQEG~IgLirAiekFDperG~rFsTYA~~wIR~~I~~~Ird~~R~irip 343 (508)
.|++.|+..|.+.|+.+|.++.++..+++|++||+|+++|+++++|++..| .|.+|++.++++.+.+++++..+..
T Consensus 27 ~a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~~n~~~d~~R~~~~~~--- 102 (184)
T 2q1z_A 27 AAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIARNRRIDGLRKDRQPE--- 102 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHHHTSCCTTTCSSSCCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHHHHHHHHHHHhhcccc---
Confidence 999999999999999999999999999999999999999999999998776 7999999999997777765543210
Q ss_pred ccHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHhCccccccccCCCCCCCCCCCccccccccccCCC
Q 010521 344 NHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVEN 423 (508)
Q Consensus 344 ~~~~~~l~kir~a~~~l~~~Gr~Pt~eEIA~~Lgis~e~v~~~l~~~~~~~SLD~~~~~~~~~~~~~~l~d~i~d~~~e~ 423 (508)
.++. . ...+. ..
T Consensus 103 ---------------------------------------------------~~~~-----------~----~~~~~--~~ 114 (184)
T 2q1z_A 103 ---------------------------------------------------PEDL-----------F----WGPDS--EP 114 (184)
T ss_dssp ---------------------------------------------------CCCC-----------C----CCSSC--CC
T ss_pred ---------------------------------------------------cccc-----------c----ccCCC--CC
Confidence 0000 0 00111 23
Q ss_pred CccchHHHHHHHHHHHHHHHccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 010521 424 NPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 496 (508)
Q Consensus 424 ~Pe~~ve~~el~e~L~~~L~~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L 496 (508)
+|++.+...+....|..+| ..||+++|.||.++| .+|+|++|||+.||+|.++|++++++|+++||+.+
T Consensus 115 ~~~~~~~~~~~~~~l~~~l-~~L~~~~r~vl~l~~---~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 183 (184)
T 2q1z_A 115 DQADVYEMQQENARLGRAI-ARLPEAQRALIERAF---FGDLTHRELAAETGLPLGTIKSRIRLALDRLRQHM 183 (184)
T ss_dssp CHHHHHHHHHHHHHHHHHH-HTSCHHHHHHHHHHH---HSCCSSCCSTTTCCCCCHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 5777777778888899999 899999999999999 79999999999999999999999999999999875
No 9
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=99.85 E-value=9.1e-21 Score=170.93 Aligned_cols=155 Identities=17% Similarity=0.250 Sum_probs=108.7
Q ss_pred CCCHHHHHHHHHHHHHHhhhccCCCCCCcchhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHcCCCC
Q 010521 288 GADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTP 367 (508)
Q Consensus 288 g~d~EDLiQEG~IgLirAiekFDperG~rFsTYA~~wIR~~I~~~Ird~~R~irip~~~~~~l~kir~a~~~l~~~Gr~P 367 (508)
|.+++|++||+++++|+++.+||+.+ .+|.+|++.++++.+.+++++..+..+.+...
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~~~~~~~--------------------- 58 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQKHMVLNE--------------------- 58 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcccchhhHH---------------------
Confidence 57899999999999999999999987 68999999999999999998875432222110
Q ss_pred CHHHHHHHhCCCHHHHHHHHHHhCccccccccCCCCCCCCCCCccc----cccccccCCCCccchHHHHHHHHHHHHHHH
Q 010521 368 SVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHH----SYIADNRVENNPWHGVDDWALKDEVNKLII 443 (508)
Q Consensus 368 t~eEIA~~Lgis~e~v~~~l~~~~~~~SLD~~~~~~~~~~~~~~l~----d~i~d~~~e~~Pe~~ve~~el~e~L~~~L~ 443 (508)
.++.+.+. +++....+. +.+.+. ..+|++.+...+....|..+|
T Consensus 59 -------------------------~~~~~~~~----~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~e~~~~l~~~l- 106 (164)
T 3mzy_A 59 -------------------------ALKTNAIL----EDSAYFDDEGHNINNYKSS--ESNPEEAYLLKEEIEEFKKFS- 106 (164)
T ss_dssp --------------------------------------------------------------CHHHHHHHHHHHHHHHH-
T ss_pred -------------------------Hhhhhhhh----ccCCCCCcccchhhhhccc--CCCHHHHHHHHHHHHHHHHHH-
Confidence 01111100 000000110 111222 247888888888899999999
Q ss_pred c-cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 010521 444 V-TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKK 500 (508)
Q Consensus 444 ~-~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~~~~ 500 (508)
. .||+++|.||. +| .+|+|++|||+.||+|.++|++++++|+++||+.+...+
T Consensus 107 ~~~L~~~~r~v~~-~~---~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~~~~ 160 (164)
T 3mzy_A 107 ENNFSKFEKEVLT-YL---IRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIKEEE 160 (164)
T ss_dssp HHHSCHHHHHHHH-HH---TTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhCCHHHHHHHH-HH---HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 7 99999999999 67 699999999999999999999999999999999997653
No 10
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=99.73 E-value=4.3e-20 Score=169.04 Aligned_cols=141 Identities=11% Similarity=0.109 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccCCCCCCcchhHHHHHHHHHHHHHHHHhccccccccc
Q 010521 266 REKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNH 345 (508)
Q Consensus 266 ~e~LIe~yl~LV~sIAkrY~~~g~d~EDLiQEG~IgLirAiekFDperG~rFsTYA~~wIR~~I~~~Ird~~R~irip~~ 345 (508)
|+.|+..|.+.|+.+|.+++++..+++|++||+|+++|+++++|++.. .|.+|++..++|.+.+++++...
T Consensus 3 f~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~~--~~~~wl~~ia~n~~~d~~R~~~~------- 73 (157)
T 2lfw_A 3 LGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRDV--DPRLGLYRMFQGIWASANADGEA------- 73 (157)
T ss_dssp GGGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCSS--CTTHHHHHHHHHHHHHHTTTTSC-------
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCCC--cHHHHHHHHHHHHHHHHhhccCc-------
Confidence 567889999999999999999999999999999999999999999754 69999999999977777653210
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHhCccccccccCCCCCCCCCCCccccccccccCCCCc
Q 010521 346 LHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNP 425 (508)
Q Consensus 346 ~~~~l~kir~a~~~l~~~Gr~Pt~eEIA~~Lgis~e~v~~~l~~~~~~~SLD~~~~~~~~~~~~~~l~d~i~d~~~e~~P 425 (508)
+. .. . +. .
T Consensus 74 ---------------------------------------------------~~---------~~--~-----e~-----~ 81 (157)
T 2lfw_A 74 ---------------------------------------------------QT---------SQ--S-----DA-----E 81 (157)
T ss_dssp ---------------------------------------------------CC---------CC--C-----SC-----S
T ss_pred ---------------------------------------------------cc---------CC--c-----ch-----H
Confidence 00 00 0 00 0
Q ss_pred cchHHHHHHHHHHHHHHHccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q 010521 426 WHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 498 (508)
Q Consensus 426 e~~ve~~el~e~L~~~L~~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~~ 498 (508)
+....|..+| ..||+++|.||.|+| .+|+|++|||+.||+|.+||++.+.+|+++||+.+..
T Consensus 82 -------~~~~~l~~~l-~~Lp~~~r~vl~L~~---~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~ 143 (157)
T 2lfw_A 82 -------GTEAVARARL-ARMTPLSRQALLLTA---MEGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRA 143 (157)
T ss_dssp -------SSSSTTTTTT-TTSCTTHHHHHTTTS---SSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSC
T ss_pred -------HHHHHHHHHH-HhCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 0112355677 899999999999999 8999999999999999999999999999999987753
No 11
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=99.66 E-value=1.9e-16 Score=162.54 Aligned_cols=109 Identities=35% Similarity=0.698 Sum_probs=95.4
Q ss_pred hHHHHHHhhcccCCCCHHHHHHHHHHHHcCCccchhHHHHHHhhCCCCchHHHHHHhccChHHHHHhhhhhHHHHHHHHH
Q 010521 192 RLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVM 271 (508)
Q Consensus 192 ~~~~yl~~i~~~~lLt~~EE~eL~~~ik~Gd~l~~~~~~l~~~~g~~p~~~~~a~~~~~s~~~L~~~l~e~~~A~e~LIe 271 (508)
..+..|.++.....|+..++..|+.+++.||. ....|++.||.
T Consensus 230 ~~q~kl~~ie~~~~l~~~~~~~l~~~~~~gd~-------------------------------------~~~~A~~~L~~ 272 (339)
T 1sig_A 230 RALQKLQQIEEETGLTIEQVKDINRRMSIGEA-------------------------------------KARRAKKEMVE 272 (339)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-------------------------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHhccc-------------------------------------cchhhhHHHHH
Confidence 45566777777777788888888888888774 11279999999
Q ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccCCCCCCcchhHHHHHHHHHHHHHHHHhc
Q 010521 272 SNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENS 337 (508)
Q Consensus 272 ~yl~LV~sIAkrY~~~g~d~EDLiQEG~IgLirAiekFDperG~rFsTYA~~wIR~~I~~~Ird~~ 337 (508)
.|+++|+++|++|++++.+++||+||||+|||+++++|++.+|.+|+||++|||+|.|.++++++.
T Consensus 273 ~~~~~v~~~a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~f~twl~~iirn~~~~~lr~~~ 338 (339)
T 1sig_A 273 ANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQA 338 (339)
T ss_dssp HTHHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999998889999999999999999999875
No 12
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.60 E-value=5.1e-16 Score=155.70 Aligned_cols=140 Identities=11% Similarity=0.020 Sum_probs=115.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccCCCCCCcchhHHHHHHHHHHHHHHHHhcccccc
Q 010521 263 SLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRL 342 (508)
Q Consensus 263 ~~A~e~LIe~yl~LV~sIAkrY~~~g~d~EDLiQEG~IgLirAiekFDperG~rFsTYA~~wIR~~I~~~Ird~~R~iri 342 (508)
..+|+.|+..|.+.++.+|.+|+++..++||++||+|+.+|+...+|++.. .|.+|++..++|.+.++++...
T Consensus 20 ~~~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~~--~~~~wL~~ia~n~~~d~~r~~~----- 92 (286)
T 3n0r_A 20 EMHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDANL--SPRVALYRVFHAIWLSSGAQLE----- 92 (286)
T ss_dssp CCCHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSSS--CHHHHHHHHHHHHHSCTTC--------
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCCc--ChHHHHHHHHHHHHHhhccccc-----
Confidence 379999999999999999999999999999999999999999999999753 6999999998886555443110
Q ss_pred cccHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHhCccccccccCCCCCCCCCCCccccccccccCC
Q 010521 343 PNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVE 422 (508)
Q Consensus 343 p~~~~~~l~kir~a~~~l~~~Gr~Pt~eEIA~~Lgis~e~v~~~l~~~~~~~SLD~~~~~~~~~~~~~~l~d~i~d~~~e 422 (508)
.+ ... +
T Consensus 93 -------------------------------------------------------~~------~~~---------~---- 98 (286)
T 3n0r_A 93 -------------------------------------------------------VG------HDQ---------G---- 98 (286)
T ss_dssp --------------------------------------------------------C------CCC---------C----
T ss_pred -------------------------------------------------------cC------CCc---------c----
Confidence 00 000 0
Q ss_pred CCccchHHHHHHHHHHHHHHHccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 010521 423 NNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 496 (508)
Q Consensus 423 ~~Pe~~ve~~el~e~L~~~L~~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L 496 (508)
... ...|.++| +.||+++|.||.|+| .+|+|++|||+.+|++.++|+....+|+++|+..+
T Consensus 99 ~~~---------~~~l~~al-~~Lp~~~R~v~~L~~---~eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l 159 (286)
T 3n0r_A 99 LHA---------GDDAAQRL-MRIAPRSRQAFLLTA---LEGFTPTEAAQILDCDFGEVERLIGDAQAEIDAEL 159 (286)
T ss_dssp CCT---------TSHHHHHH-HHHSCHHHHHHHHHH---TTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cch---------HHHHHHHH-HhCCHHHeeEEEEEe---eCCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhccC
Confidence 000 12477888 899999999999999 89999999999999999999999999999998643
No 13
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=99.44 E-value=4.8e-13 Score=114.49 Aligned_cols=79 Identities=27% Similarity=0.498 Sum_probs=72.5
Q ss_pred hHHHHHHHHHHHHHHHccCCHHHHHHHhHHhccC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhHHHhhh
Q 010521 428 GVDDWALKDEVNKLIIVTLGEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAMLV 506 (508)
Q Consensus 428 ~ve~~el~e~L~~~L~~~Lp~rER~VI~LryGLd-~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~~~~l~~~l~ 506 (508)
.+...++...|..+| +.|||+||.||.++||++ .+++|++|||+.||+|++||++++.+|+++||..+....++.|+.
T Consensus 3 ~~~~~el~~~l~~aL-~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~~~~~ 81 (99)
T 3t72_q 3 SATTESLRAATHDVL-AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSGSS 81 (99)
T ss_pred HHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677888999999 899999999999999885 479999999999999999999999999999999999999999885
Q ss_pred c
Q 010521 507 K 507 (508)
Q Consensus 507 ~ 507 (508)
.
T Consensus 82 ~ 82 (99)
T 3t72_q 82 G 82 (99)
T ss_pred h
Confidence 3
No 14
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=99.31 E-value=9.1e-12 Score=104.09 Aligned_cols=74 Identities=14% Similarity=0.150 Sum_probs=69.6
Q ss_pred CCccchHHHHHHHHHHHHHHHccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 010521 423 NNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKK 500 (508)
Q Consensus 423 ~~Pe~~ve~~el~e~L~~~L~~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~~~~ 500 (508)
.+|++.++..+....|..+| ..||+++|.||.|+| ++|+|++|||+.||||.+||++++++|+++||+.+...+
T Consensus 16 ~~~~~~~~~~~~~~~l~~~l-~~L~~~~r~vl~l~~---~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~~ 89 (92)
T 3hug_A 16 QSTPDEVNAALDRLLIADAL-AQLSAEHRAVIQRSY---YRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELG 89 (92)
T ss_dssp CCHHHHHHHHHHHHHHHHHH-HTSCHHHHHHHHHHH---TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCchHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 47888899999999999999 899999999999999 899999999999999999999999999999999997654
No 15
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=99.16 E-value=7.2e-12 Score=98.92 Aligned_cols=63 Identities=33% Similarity=0.625 Sum_probs=58.0
Q ss_pred ccCCHHHHHHHhHHhccC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhHHHhhh
Q 010521 444 VTLGEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAMLV 506 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd-~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~~~~l~~~l~ 506 (508)
+.|||+|+.||.++||++ ++|+|++|||+.||+|++||++++.+|+++||..+....+..|+.
T Consensus 4 ~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~~~~~~~~~~ 67 (68)
T 2p7v_B 4 AGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 67 (68)
T ss_dssp CCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGGGGGSCTTC
T ss_pred HcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 689999999999999884 589999999999999999999999999999999988887777764
No 16
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=99.12 E-value=6.5e-11 Score=98.12 Aligned_cols=71 Identities=35% Similarity=0.605 Sum_probs=63.7
Q ss_pred HHHHHHHHccCCHHHHHHHhHHhccC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhHHHhhhc
Q 010521 436 DEVNKLIIVTLGEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEAMLVK 507 (508)
Q Consensus 436 e~L~~~L~~~Lp~rER~VI~LryGLd-~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~~~~l~~~l~~ 507 (508)
..|..+| +.||+++|.||.++|+|+ .+++|++|||+.||+|++||++++.+|+++||..+....+..|+..
T Consensus 10 ~~l~~~l-~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~~~~~~~~~ 81 (87)
T 1tty_A 10 EELEKVL-KTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSL 81 (87)
T ss_dssp SHHHHHH-TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHHHHHHHHH
T ss_pred HHHHHHH-HhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4577888 899999999999999763 3799999999999999999999999999999999988888887754
No 17
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=99.11 E-value=1.6e-10 Score=99.00 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccCCCCCCcchhHHHHHHHHHHHHHHHHhcc
Q 010521 264 LAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSR 338 (508)
Q Consensus 264 ~A~e~LIe~yl~LV~sIAkrY~~~g~d~EDLiQEG~IgLirAiekFDperG~rFsTYA~~wIR~~I~~~Ird~~R 338 (508)
.|++.|+..|.+.++.+|.++ ++..+++|++||+|+.+|+.+.+|++.. .|.+|++..++|.+.+++++..+
T Consensus 24 ~a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl~~~~~~~~~~~~~--~~~~wl~~i~~n~~~d~~R~~~~ 95 (112)
T 2o7g_A 24 RALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSARS--SARTWLLAIARHVVADHIRHVRS 95 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHGGGCCCSS--CHHHHHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCCCC--CHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999 8888999999999999999999999643 69999999999999888876643
No 18
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=99.04 E-value=5.8e-11 Score=94.95 Aligned_cols=67 Identities=36% Similarity=0.567 Sum_probs=52.4
Q ss_pred HHHHHHccCCHHHHHHHhHHhccC-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHHHhhHHHhh
Q 010521 438 VNKLIIVTLGEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVALEKLK-HAARKKKMEAML 505 (508)
Q Consensus 438 L~~~L~~~Lp~rER~VI~LryGLd-~eg~TleEIAe~LgIS~erVrqi~~rALkKLR-~~L~~~~l~~~l 505 (508)
|..+| +.||++|+.||.++|+|+ .+|+|++|||+.||+|++||++++.+|+++|| ..+....++.|+
T Consensus 4 l~~~l-~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~~~~~~~~~ 72 (73)
T 1ku3_A 4 LEKAL-SKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFL 72 (73)
T ss_dssp CSSST-TTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHH-HhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhhHHHHHHhh
Confidence 34456 899999999999999764 37999999999999999999999999999999 888777777765
No 19
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=99.00 E-value=6.1e-10 Score=87.27 Aligned_cols=65 Identities=22% Similarity=0.175 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhH
Q 010521 433 ALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKM 501 (508)
Q Consensus 433 el~e~L~~~L~~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~~~~l 501 (508)
+....+..+| +.||++++.||.++| .+|+|++|||+.||+|+.+|++++++|+++||..+....+
T Consensus 4 e~~~~l~~~l-~~L~~~~r~il~l~~---~~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~~~~ 68 (70)
T 2o8x_A 4 EDLVEVTTMI-ADLTTDQREALLLTQ---LLGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDL 68 (70)
T ss_dssp HHHHHHHTTT-TSSCHHHHHHHHHHH---TSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHH-HhCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhcccC
Confidence 4456788888 899999999999999 7999999999999999999999999999999998876543
No 20
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=98.95 E-value=9.9e-10 Score=89.82 Aligned_cols=75 Identities=19% Similarity=0.207 Sum_probs=66.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccCCCCCCcchhHHHHHHHHHHHHHHHHhc
Q 010521 261 ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENS 337 (508)
Q Consensus 261 e~~~A~e~LIe~yl~LV~sIAkrY~~~g~d~EDLiQEG~IgLirAiekFDperG~rFsTYA~~wIR~~I~~~Ird~~ 337 (508)
+++.|++.|+..|.+.++.+|.++.++..++||++||+|+.+|+.+++|++. ..|.+|++..+++.+.+++++..
T Consensus 9 g~~~af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~~--~~~~~wl~~i~~n~~~d~~R~~~ 83 (87)
T 1h3l_A 9 ERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFREG--TNLKAWLYRILTNTFINSYRKKQ 83 (87)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCSS--SCHHHHHHHHHHHHHHHTCC---
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHHHHHHHHhc
Confidence 4568999999999999999999999999999999999999999999999975 36999999999998888776543
No 21
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=98.84 E-value=1.4e-08 Score=88.50 Aligned_cols=72 Identities=14% Similarity=0.156 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhHHH
Q 010521 429 VDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKMEA 503 (508)
Q Consensus 429 ve~~el~e~L~~~L~~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~~~~l~~ 503 (508)
++..+....+..+|...||+++|.||.++| .+|+|++|||+.||+|++||++++++|+++||..+...++..
T Consensus 9 ~e~~~~~~~l~~~l~~~L~~~~r~vl~l~~---~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~~~ 80 (113)
T 1xsv_A 9 LVKTLRMNYLFDFYQSLLTNKQRNYLELFY---LEDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLELYQ 80 (113)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHH---TSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHhHHh
Confidence 445556667777774689999999999999 799999999999999999999999999999999987765543
No 22
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=98.70 E-value=3e-08 Score=86.45 Aligned_cols=65 Identities=20% Similarity=0.265 Sum_probs=56.8
Q ss_pred HHHHHHHHHccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhhHH
Q 010521 435 KDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKKME 502 (508)
Q Consensus 435 ~e~L~~~L~~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~~~~l~ 502 (508)
...+..++...|||+++.||.++| .+|+|++|||+.+|+|++||++++++|+++||..+...++.
T Consensus 12 ~~~l~~~l~~~L~~~~r~vl~l~y---~~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~~ 76 (113)
T 1s7o_A 12 MNALFEFYAALLTDKQMNYIELYY---ADDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMKLHMY 76 (113)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHH---HTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 345555553689999999999998 79999999999999999999999999999999998776553
No 23
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.65 E-value=4.4e-11 Score=117.84 Aligned_cols=153 Identities=13% Similarity=0.056 Sum_probs=107.4
Q ss_pred HHHhhh-hhHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH----HHHHHHHHHhhhccCCCCCCcchhHHHHHHHHHH
Q 010521 255 LQSILM-ECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLV----QGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGV 329 (508)
Q Consensus 255 L~~~l~-e~~~A~e~LIe~yl~LV~sIAkrY~~~g~d~EDLi----QEG~IgLirAiekFDperG~rFsTYA~~wIR~~I 329 (508)
|..++. ++..+.+.+...|.++++.+............|+. ||.++.+|+.+..|++.. .|.+|++..+++.+
T Consensus 87 ll~~i~p~D~~~~~~~~~~~~~fi~~l~~~~~~~~~~~~dl~~~~~qe~fl~~~~~~~~~~~~~--~~~~WL~~ia~n~~ 164 (258)
T 3clo_A 87 IYRRIHPEDLVEKRLMEYKFFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTP--AGNVWLIFCLYSLS 164 (258)
T ss_dssp HHTTBCHHHHHHHHHHHHHHHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECT--TSCEEEEEEEEEEC
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHhcCHHhccCCeeeEEeecCCcCHHHHHHHHhHHhcCCCC--chHHHHHHHHHHHH
Confidence 444443 45678999999999999999988877777788886 999999999999998644 58888865444421
Q ss_pred HHHHHHhcccccccccHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHhCccccccccCCCCCCCCCC
Q 010521 330 SRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPG 409 (508)
Q Consensus 330 ~~~Ird~~R~irip~~~~~~l~kir~a~~~l~~~Gr~Pt~eEIA~~Lgis~e~v~~~l~~~~~~~SLD~~~~~~~~~~~~ 409 (508)
.++ .+.. .+.
T Consensus 165 ~d~----~r~~------------------------------------------------------~~~------------ 174 (258)
T 3clo_A 165 ADQ----RPEQ------------------------------------------------------GIY------------ 174 (258)
T ss_dssp SCC----CCCS------------------------------------------------------SCC------------
T ss_pred cch----hhhh------------------------------------------------------HHH------------
Confidence 111 0000 000
Q ss_pred CccccccccccCCCCccchHHHHHHHHHHHHHHHccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 010521 410 ETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVAL 489 (508)
Q Consensus 410 ~~l~d~i~d~~~e~~Pe~~ve~~el~e~L~~~L~~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rAL 489 (508)
..+.+....... .+. .+..++ ..||++||+||.|++ +|+|.+|||+.||+|.+||+.+++||+
T Consensus 175 ~~~~~~~~~~~~--~~~----------~~~~~~-~~L~~~erevl~L~~----~G~s~~EIA~~L~iS~~TVk~~l~ra~ 237 (258)
T 3clo_A 175 ATITQMERGEVE--TLS----------LSEEHR-NILSEREKEILRCIR----KGLSSKEIAATLYISVNTVNRHRQNIL 237 (258)
T ss_dssp CEEEETTTTEEE--ECC----------CHHHHT-TSSCHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHhhcccccc--cch----------hhHHHH-ccCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 000000000000 000 134566 899999999999976 899999999999999999999999999
Q ss_pred HHHHHHH
Q 010521 490 EKLKHAA 496 (508)
Q Consensus 490 kKLR~~L 496 (508)
+|||..-
T Consensus 238 ~kL~~~~ 244 (258)
T 3clo_A 238 EKLSVGN 244 (258)
T ss_dssp HHTTCSS
T ss_pred HHHcCCC
Confidence 9998643
No 24
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=98.51 E-value=4.4e-08 Score=81.44 Aligned_cols=59 Identities=22% Similarity=0.168 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 431 DWALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 431 ~~el~e~L~~~L~~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.......+..++ ..||++|+.||.+++ +|+|.+|||+.||+|..||+.++.++++||+.
T Consensus 16 ~~~~~~~l~~~l-~~Lt~~e~~vl~l~~----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 74 (91)
T 2rnj_A 16 RGSHMKKRAELY-EMLTEREMEILLLIA----KGYSNQEIASASHITIKTVKTHVSNILSKLEV 74 (91)
T ss_dssp ---------CTG-GGCCSHHHHHHHHHH----TTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHH-hcCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 344456677888 899999999999954 89999999999999999999999999999985
No 25
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=98.51 E-value=7.7e-08 Score=82.33 Aligned_cols=68 Identities=13% Similarity=0.125 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHhHHhccCC---CC-CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q 010521 429 VDDWALKDEVNKLIIVTLGEREREIIRLYYGLDK---EC-LTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 497 (508)
Q Consensus 429 ve~~el~e~L~~~L~~~Lp~rER~VI~LryGLd~---eg-~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~ 497 (508)
+......+.+..++.+.|+++|+.+|.+||||.. +| +|++|||+.+|+|+.||+++ .++|++|...+.
T Consensus 19 i~~~~~~~~l~~~l~~lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~~~~k 90 (101)
T 1jhg_A 19 LKNAYQNDLHLPLLNLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAPVELR 90 (101)
T ss_dssp HHHHHHTTCHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSCHHHH
T ss_pred HHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHccHHHH
Confidence 3344444556666645799999999999999942 45 99999999999999999999 899999987664
No 26
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=98.49 E-value=1.6e-07 Score=78.92 Aligned_cols=57 Identities=25% Similarity=0.281 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 433 ALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 433 el~e~L~~~L~~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
+....|..+| ..||++|++||.+++ +|+|.+|||+.||+|..||+.++.++++||+.
T Consensus 16 ~~~~~l~~~l-~~Lt~~e~~vl~l~~----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 16 PRGSHMQDPL-SGLTDQERTLLGLLS----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp ------------CCCHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHH-hcCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 3455677888 899999999999975 89999999999999999999999999999985
No 27
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=98.46 E-value=1.9e-07 Score=74.75 Aligned_cols=54 Identities=22% Similarity=0.318 Sum_probs=49.1
Q ss_pred HHHHHHHHccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 436 DEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 436 e~L~~~L~~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
..+..++ ..||++|+.||.++ .+|+|.+|||+.||+|..+|+++..++++||+.
T Consensus 8 ~~l~~~l-~~L~~~e~~vl~l~----~~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 8 NDIRARL-QTLSERERQVLSAV----VAGLPNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HHHHHHH-HHHCHHHHHHHHHH----TTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHH-HhCCHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 4566777 89999999999994 489999999999999999999999999999985
No 28
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=98.36 E-value=2.8e-07 Score=75.32 Aligned_cols=56 Identities=25% Similarity=0.369 Sum_probs=48.0
Q ss_pred HHHHHHHccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q 010521 437 EVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 497 (508)
Q Consensus 437 ~L~~~L~~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~ 497 (508)
.+..++ ..|+++|++||.++ .+|+|.+|||+.||+|..||+..+.++++||+....
T Consensus 14 ~~~~~~-~~Lt~~e~~vl~l~----~~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 69 (82)
T 1je8_A 14 TTERDV-NQLTPRERDILKLI----AQGLPNKMIARRLDITESTVKVHVKHMLKKMKLKSR 69 (82)
T ss_dssp ---CCG-GGSCHHHHHHHHHH----TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHH-ccCCHHHHHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 345566 89999999999995 489999999999999999999999999999986543
No 29
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=98.18 E-value=1.7e-06 Score=68.10 Aligned_cols=51 Identities=27% Similarity=0.258 Sum_probs=45.6
Q ss_pred HHHHccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010521 440 KLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 495 (508)
Q Consensus 440 ~~L~~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~ 495 (508)
..+ ..|+++|+.||.++ .+|+|.+|||+.||+|..+|++.+.+++++|+..
T Consensus 7 ~~~-~~L~~~e~~il~~~----~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 7 QSK-PLLTKREREVFELL----VQDKTTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp -CC-CCCCHHHHHHHHHH----TTTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCC-CCCCHHHHHHHHHH----HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 345 78999999999994 4899999999999999999999999999999854
No 30
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=98.08 E-value=4.9e-06 Score=69.40 Aligned_cols=47 Identities=21% Similarity=0.191 Sum_probs=43.8
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
..|+++|++||.+.+ +|+|.+|||+.||||..||+..+.++++||.-
T Consensus 28 ~~Lt~rE~~Vl~l~~----~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klgv 74 (90)
T 3ulq_B 28 DVLTPRECLILQEVE----KGFTNQEIADALHLSKRSIEYSLTSIFNKLNV 74 (90)
T ss_dssp -CCCHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 689999999999987 89999999999999999999999999999863
No 31
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=97.96 E-value=9.9e-06 Score=68.84 Aligned_cols=47 Identities=26% Similarity=0.349 Sum_probs=43.8
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
..||++|++||.+.+ +|+|.+|||+.||||..||+..+.++++||.-
T Consensus 33 ~~Lt~re~~Vl~l~~----~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 33 KRLSPKESEVLRLFA----EGFLVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp SSCCHHHHHHHHHHH----HTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 579999999999965 89999999999999999999999999999963
No 32
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=97.96 E-value=5.7e-06 Score=62.89 Aligned_cols=43 Identities=28% Similarity=0.397 Sum_probs=39.9
Q ss_pred HHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 448 EREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 448 ~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
|+|++|+.+ + .+|+|.+|||+.||+|..||+....++++||+.
T Consensus 1 ~re~~vl~l-~---~~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 1 LRERQVLKL-I---DEGYTNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp CHHHHHHHH-H---HTSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHH-H---HcCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 579999999 5 589999999999999999999999999999985
No 33
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=97.54 E-value=0.00011 Score=70.67 Aligned_cols=46 Identities=20% Similarity=0.044 Sum_probs=43.3
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.|+++|++|+.+.. +|+|.+|||+.||||..||+..+.++++||.-
T Consensus 175 ~Lt~~e~~vl~~~~----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 175 MLSPREMLCLVWAS----KGKTASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp SCCHHHHHHHHHHH----TTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 69999999999965 89999999999999999999999999999963
No 34
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=97.52 E-value=0.00012 Score=70.40 Aligned_cols=45 Identities=22% Similarity=0.202 Sum_probs=42.6
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
.|+++|++|+.+.. +|+|.+|||+.||+|..||+..+.++++||.
T Consensus 173 ~Lt~~e~~vl~~~~----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 173 WLDPKEATYLRWIA----VGKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCHHHHHHHHHHT----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 59999999999964 8999999999999999999999999999996
No 35
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=97.38 E-value=0.00019 Score=69.39 Aligned_cols=46 Identities=24% Similarity=0.304 Sum_probs=43.4
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
..|+++|++|+.+.. +|+|.+|||+.||||..||+..+.++++||.
T Consensus 174 ~~Lt~re~~vl~~~~----~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (237)
T 3szt_A 174 VRLTARETEMLKWTA----VGKTYGEIGLILSIDQRTVKFHIVNAMRKLN 219 (237)
T ss_dssp CCCCHHHHHHHHHHH----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHH----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 479999999999975 8999999999999999999999999999986
No 36
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=97.26 E-value=0.00031 Score=69.32 Aligned_cols=46 Identities=22% Similarity=0.210 Sum_probs=43.6
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.|+++|++|+.+.. +|+|.+|||+.||||..||+..+.++++||..
T Consensus 197 ~Lt~re~~vl~~~~----~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 197 PLSQREYDIFHWMS----RGKTNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp CCCHHHHHHHHHHH----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 69999999999986 89999999999999999999999999999863
No 37
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=97.11 E-value=0.00058 Score=48.40 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=33.3
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|++.++..|...+ .+|+|..|||+.||||+.||..++.+
T Consensus 5 ~l~~~~~~~i~~~~---~~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMK---LLNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 57888886555556 58899999999999999999988754
No 38
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=96.88 E-value=0.0021 Score=54.80 Aligned_cols=46 Identities=20% Similarity=0.223 Sum_probs=42.3
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
.+++.-..|-.++| .+|+|+.|||+.||+|+.+|++.+.+|...+.
T Consensus 18 ~~~~~~~~~A~lyY---v~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 18 EVGQQTIEIARGVL---VDGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCHHHHHHHHHHH---TTCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH---HcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 68888889999999 89999999999999999999999999987753
No 39
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=96.60 E-value=0.0012 Score=48.86 Aligned_cols=39 Identities=21% Similarity=0.153 Sum_probs=30.7
Q ss_pred CCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 446 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 446 Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
+++..+.|+.+ + .+|+|..|||+.||+|+.||++++.+|
T Consensus 17 ~~~~~~~i~~l-~---~~g~s~~eIA~~lgis~~TV~~~l~~a 55 (55)
T 2x48_A 17 EDDLVSVAHEL-A---KMGYTVQQIANALGVSERKVRRYLESC 55 (55)
T ss_dssp HHHHHHHHHHH-H---HTTCCHHHHHHHHTSCHHHHHHHHTC-
T ss_pred CHHHHHHHHHH-H---HcCCCHHHHHHHHCcCHHHHHHHHHhC
Confidence 34555667666 4 488999999999999999999987654
No 40
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=96.50 E-value=0.0071 Score=55.49 Aligned_cols=50 Identities=22% Similarity=0.373 Sum_probs=44.6
Q ss_pred HHHHHccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 439 NKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 439 ~~~L~~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
...+ ..|+++|++|+.+.. +|+|.++||+.+|+|..||+....++++||.
T Consensus 137 ~~~~-~~Lt~rE~~vl~~l~----~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~ 186 (208)
T 1yio_A 137 EQLF-SSLTGREQQVLQLTI----RGLMNKQIAGELGIAEVTVKVHRHNIMQKLN 186 (208)
T ss_dssp HHHH-HTSCHHHHHHHHHHT----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HHHH-HhcCHHHHHHHHHHH----cCCcHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 3344 579999999998864 7899999999999999999999999999996
No 41
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=96.36 E-value=0.0057 Score=56.55 Aligned_cols=46 Identities=28% Similarity=0.392 Sum_probs=42.9
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
..|+++|++|+.+.. +|+|.+|||+.+++|..||+..+.+.++||.
T Consensus 153 ~~Lt~rE~~vl~~l~----~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 153 NQLTPRERDILKLIA----QGLPNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp GGSCHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHH----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 469999999998875 8899999999999999999999999999995
No 42
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=96.10 E-value=0.0075 Score=56.63 Aligned_cols=46 Identities=30% Similarity=0.348 Sum_probs=42.6
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
..|+++|++|+.+-. +|+|.+|||+.+++|..||+..+.+.++||.
T Consensus 148 ~~LT~rE~~vL~~l~----~g~s~~eIa~~l~is~~TV~~hi~~l~~KL~ 193 (225)
T 3c3w_A 148 SGLTDQERTLLGLLS----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 193 (225)
T ss_dssp TTSCHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHH----CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 469999999998875 7899999999999999999999999999985
No 43
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=95.78 E-value=0.0013 Score=72.36 Aligned_cols=59 Identities=22% Similarity=0.341 Sum_probs=35.0
Q ss_pred hhhhHHHHHHhhcccCCCCHHHHHHHHHHHHcCCccchhHHHHHHhhCCCCchHHHHHHhccChHHHHHhhhhhHHHHHH
Q 010521 189 IQNRLKGYVKGVVSEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREK 268 (508)
Q Consensus 189 ~~~~~~~yl~~i~~~~lLt~~EE~eL~~~ik~Gd~l~~~~~~l~~~~g~~p~~~~~a~~~~~s~~~L~~~l~e~~~A~e~ 268 (508)
+.|+++|||++||++||||.++|++|+++|..|+. .+...+.+++-+.+.
T Consensus 94 ~~dpvrmyl~emg~~~ll~~~~e~~~ak~ie~g~~------------------------------~~~~~~~~~P~ti~~ 143 (613)
T 3iyd_F 94 TTDPVRMYMREMGTVELLTREGEIDIAKRIEDGIN------------------------------QVQCSVAEYPEAITY 143 (613)
T ss_dssp -----------C--------CSSSTTTHHHHHHHH------------------------------HHHHHHHSCHHHHHH
T ss_pred CCCcHHHHHHHhcccccCCchhHHHHHHHHHHhHH------------------------------HHHHHHccCHHHHHH
Confidence 45899999999999999999999999999999996 567777888899999
Q ss_pred HHHHHHHHH
Q 010521 269 LVMSNVRLV 277 (508)
Q Consensus 269 LIe~yl~LV 277 (508)
|+..|-.+.
T Consensus 144 il~~~~~l~ 152 (613)
T 3iyd_F 144 LLEQYNRVE 152 (613)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998888765
No 44
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=95.40 E-value=0.011 Score=55.33 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=42.3
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
..|+++|++|+.+.. +|+|.++||+.+++|..||+..+.+.++||.
T Consensus 158 ~~Lt~rE~~vL~~l~----~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~ 203 (225)
T 3klo_A 158 AKLTKREQQIIKLLG----SGASNIEIADKLFVSENTVKTHLHNVFKKIN 203 (225)
T ss_dssp HTSCHHHHHHHHHHT----TTCCHHHHHHHTTCCHHHHHHHHHHHTTTSC
T ss_pred ccCCHHHHHHHHHHH----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 469999999998864 7899999999999999999999999999984
No 45
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=94.81 E-value=0.072 Score=50.23 Aligned_cols=57 Identities=26% Similarity=0.399 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 433 ALKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 433 el~e~L~~~L~~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.........+ ..|+++++.|+.+.. .+++..+||..||+|..+|+....++++||.-
T Consensus 187 ~~~~~~~~~l-~~L~~r~~~i~~~~~----~g~~~~eia~~l~~s~~tv~~~l~~i~~kl~~ 243 (258)
T 3p7n_A 187 ARRERAAEML-KTLSPRQLEVTTLVA----SGLRNKEVAARLGLSEKTVKMHRGLVMEKLNL 243 (258)
T ss_dssp HHHHHHHHHH-TTSCHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH-hhcCHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 3445666777 899999999999875 78999999999999999999999999999863
No 46
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=93.76 E-value=0.055 Score=49.98 Aligned_cols=49 Identities=18% Similarity=0.118 Sum_probs=41.1
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHC---CCHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIG---LSRERVRQVGLVALEKLK 493 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~Lg---IS~erVrqi~~rALkKLR 493 (508)
.|+++|++|+.+-.-=.++.+|.+|||+.++ +|..||+..+.+.++||.
T Consensus 145 ~Lt~rE~~vl~~l~~~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~ 196 (220)
T 1p2f_A 145 HLPKKEFEILLFLAENAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIE 196 (220)
T ss_dssp CCCHHHHHHHHHHHHTTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHHHCCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHh
Confidence 5999999999876410023499999999999 999999999999999985
No 47
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=93.69 E-value=0.051 Score=38.55 Aligned_cols=33 Identities=12% Similarity=0.142 Sum_probs=26.3
Q ss_pred HHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 451 REIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 451 R~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
+.|+.+ + .++.|..+||+.+|||+.||.+++.+
T Consensus 12 ~~i~~l-~---~~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 12 EQISRL-L---EKGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHH-H---HTTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHH-H---HcCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 445555 3 36799999999999999999887654
No 48
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=93.53 E-value=0.075 Score=49.94 Aligned_cols=49 Identities=10% Similarity=0.047 Sum_probs=40.2
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~L-----gIS~erVrqi~~rALkKLR 493 (508)
.|+++|.+|+.+-.-=-+..+|.+|||+.+ ++|..||+..+.+.++||.
T Consensus 153 ~LT~rE~~vL~~l~~~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~ 206 (238)
T 2gwr_A 153 SLTPLEFDLLVALARKPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVE 206 (238)
T ss_dssp CCCHHHHHHHHHHHHSTTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHHCCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhc
Confidence 699999999987651001349999999999 9999999999999999985
No 49
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=93.26 E-value=0.068 Score=49.61 Aligned_cols=49 Identities=14% Similarity=0.084 Sum_probs=41.3
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~L-----gIS~erVrqi~~rALkKLR 493 (508)
.|+++|.+|+.+-.-=.++.+|.+|||+.+ ++|..||+..+.+.++||.
T Consensus 156 ~Lt~rE~~vL~~l~~~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl~ 209 (230)
T 2oqr_A 156 TLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIE 209 (230)
T ss_dssp CCCHHHHHHHHHHHHTTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHHhCCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHh
Confidence 699999999987651012349999999999 9999999999999999985
No 50
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=93.13 E-value=0.22 Score=43.49 Aligned_cols=39 Identities=18% Similarity=0.315 Sum_probs=28.7
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVAL 489 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rAL 489 (508)
.|+.| .+|+.+-. +|+|+.|||+.+|+|..||.+ ..++|
T Consensus 61 aLs~R-~eV~klL~----~G~syreIA~~~g~S~aTIsR-v~r~L 99 (119)
T 3kor_A 61 SLSQR-LQVAKMIK----QGYTYATIEQESGASTATISR-VKRSL 99 (119)
T ss_dssp HHHHH-HHHHHHHH----HTCCHHHHHHHHCCCHHHHHH-HHHHH
T ss_pred HHHHH-HHHHHHHH----cCCCHHHHHHHHCCCHHHHHH-HHHHH
Confidence 34444 56666643 789999999999999999976 34444
No 51
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=92.81 E-value=0.082 Score=48.77 Aligned_cols=50 Identities=14% Similarity=0.146 Sum_probs=41.2
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIG-----LSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~Lg-----IS~erVrqi~~rALkKLR~ 494 (508)
.|+++|.+|+.+-.-=.+..+|.+|||+.++ +|..||+..+.+.++||..
T Consensus 151 ~Lt~rE~~vL~~l~~~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 205 (225)
T 1kgs_A 151 DLTKKEYQILEYLVMNKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDK 205 (225)
T ss_dssp CCCHHHHHHHHHHHHTTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHHhCCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhhC
Confidence 6999999999876410012399999999998 9999999999999999863
No 52
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=92.53 E-value=0.078 Score=49.19 Aligned_cols=50 Identities=14% Similarity=0.084 Sum_probs=40.4
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIG-----LSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~Lg-----IS~erVrqi~~rALkKLR~ 494 (508)
.|+++|.+|+.+-.-=.+..+|.++||+.++ +|..||+..+.+.++||..
T Consensus 159 ~Lt~rE~~vL~~l~~g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 213 (233)
T 1ys7_A 159 DLTKREFDLLAVLAEHKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA 213 (233)
T ss_dssp CCCHHHHHHHHHHHHTTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHhCCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhcc
Confidence 6999999999886510012299999999998 9999999999999999963
No 53
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=92.04 E-value=0.17 Score=47.83 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=29.6
Q ss_pred HHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 010521 450 EREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVAL 489 (508)
Q Consensus 450 ER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rAL 489 (508)
-..+..+ | ..|+|++|||+.||||+.+|++++..|.
T Consensus 14 G~ria~~-y---~~g~tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 14 GLRLMRM-K---NDGMSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp HHHHHHH-H---HTTCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHHH-H---HcCCCHHHHHHHhCcCHHHHHHHHHHhc
Confidence 3345555 5 5889999999999999999999987764
No 54
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=91.99 E-value=0.16 Score=43.68 Aligned_cols=40 Identities=20% Similarity=0.236 Sum_probs=33.1
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|++.++..|...+ .+|+|..+||+.||+|+.||..++.+
T Consensus 6 ~~s~~~r~~i~~~~---~~G~s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 6 ALSDTERAQLDVMK---LLNVSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHc
Confidence 57777777665555 57899999999999999999998865
No 55
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=91.88 E-value=0.23 Score=41.63 Aligned_cols=41 Identities=17% Similarity=-0.001 Sum_probs=31.5
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.+++.++.-|...+ .+|+|..+||+.||||+.||++++.+.
T Consensus 17 ~~s~~~r~~i~~~~---~~g~s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 17 PLPNNIRLKIVEMA---ADGIRPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp CCCHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45666555444444 478999999999999999999998764
No 56
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=91.18 E-value=0.069 Score=49.39 Aligned_cols=46 Identities=9% Similarity=0.062 Sum_probs=41.3
Q ss_pred cCCHHHHHHHhHHhccCCCC----CCHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKEC----LTWEDISKRIG-----LSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg----~TleEIAe~Lg-----IS~erVrqi~~rALkKLR~ 494 (508)
.|+++|++|+.+-. ++ +|.+|||+.++ +|..||+..+.+.++||..
T Consensus 143 ~Lt~rE~~vL~~l~----~~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL~~ 197 (223)
T 2hqr_A 143 EVKGKPFEVLTHLA----RHRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDK 197 (223)
T ss_dssp CCCSTTTHHHHHHH----HTCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHH----hCCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHhc
Confidence 69999999998865 44 99999999999 9999999999999999863
No 57
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=91.03 E-value=0.041 Score=53.64 Aligned_cols=51 Identities=20% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHHHHccCCHHHHHHHhHHhccCCCCCCHHHHHHHHC--CCHHHHHHHHHHHHHHHH
Q 010521 438 VNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIG--LSRERVRQVGLVALEKLK 493 (508)
Q Consensus 438 L~~~L~~~Lp~rER~VI~LryGLd~eg~TleEIAe~Lg--IS~erVrqi~~rALkKLR 493 (508)
+...+ ..|++.++.+. ..+ +.+.|.+|||+.|| ||.++|+.++.+|++.|.
T Consensus 192 l~e~i-~~l~~~~~~L~-~~~---~~~ps~~EIAe~Lg~~is~~tVk~~l~~ar~~ls 244 (245)
T 3ugo_A 192 MVETI-NKLSRTARQLQ-QEL---GREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVS 244 (245)
T ss_dssp ----------------------------------------------------------
T ss_pred HHHHH-HHHHHHHHHHH-HHh---CCCCCHHHHHHHHCCCCCHHHHHHHHHHHhhccC
Confidence 34445 67777777744 455 47789999999999 999999999999987763
No 58
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=90.85 E-value=0.26 Score=39.44 Aligned_cols=40 Identities=20% Similarity=0.396 Sum_probs=27.8
Q ss_pred HHHHHHHhHHhccC-CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 448 EREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 448 ~rER~VI~LryGLd-~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
+.++.||.+-.-.+ +++.|..|||+.||||+.+|++++++
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~ 54 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYS 54 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 34566654433221 24689999999999999999766554
No 59
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=90.80 E-value=0.14 Score=48.83 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=40.8
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHH-----HHCCCHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISK-----RIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe-----~LgIS~erVrqi~~rALkKLR 493 (508)
.|+++|++|+.+..-=.+..+|.+|||+ .++++..||+..+.+.++||.
T Consensus 182 ~LT~rE~evL~ll~~g~~~~~s~~eIa~~l~~~~l~~s~~TV~~hi~~lr~KL~ 235 (249)
T 3q9s_A 182 RLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLR 235 (249)
T ss_dssp CCCHHHHHHHHHHHHSTTCCCCHHHHHHHHHTTCSCTTCSHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHHHCCCceEcHHHHHHHhcCCCCCCCccCHHHHHHHHHHHhh
Confidence 6999999999987611123499999999 588899999999999999985
No 60
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=90.44 E-value=0.36 Score=42.42 Aligned_cols=41 Identities=20% Similarity=0.080 Sum_probs=32.2
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.+++.++.-|...+ .+|+|..+||+.||||+.||++++.+.
T Consensus 32 ~~s~e~r~~iv~~~---~~G~s~~~iA~~lgis~~TV~rw~~~~ 72 (149)
T 1k78_A 32 PLPDVVRQRIVELA---HQGVRPCDISRQLRVSHGCVSKILGRY 72 (149)
T ss_dssp CCCHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45666665444444 478999999999999999999998774
No 61
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=90.14 E-value=0.45 Score=40.77 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=31.7
Q ss_pred ccCCHHHHHHHhHHhccC---CCCCCHHHHHHHHCCCHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLD---KECLTWEDISKRIGLSRERVRQ 483 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd---~eg~TleEIAe~LgIS~erVrq 483 (508)
+-|++.|+.-+-.|+-+- .+|+|+.||++.+|+|..||.+
T Consensus 35 dL~T~~E~~alaqR~~Ia~lL~~G~SyreIa~~tG~StaTIsR 77 (107)
T 3frw_A 35 DVCTINELLSLSQRFEVAKMLTDKRTYLDISEKTGASTATISR 77 (107)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCccHHHHHH
Confidence 447888887776665441 3789999999999999999975
No 62
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=89.62 E-value=0.52 Score=38.06 Aligned_cols=26 Identities=12% Similarity=0.166 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.+.|..+||+.+|||+.||.+++.+.
T Consensus 37 ~g~s~~~iA~~~gIs~sTl~rW~k~~ 62 (87)
T 2elh_A 37 DGESKASVARDIGVPESTLRGWCKNE 62 (87)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 56899999999999999999987544
No 63
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=89.51 E-value=0.49 Score=44.67 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=42.4
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~L-----gIS~erVrqi~~rALkKLR~ 494 (508)
.|+++|.+|+.+..-=.++..|.++|++.+ +++..||+..+.+.++||..
T Consensus 176 ~LT~rE~~iL~~l~~~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr~KL~~ 230 (250)
T 3r0j_A 176 SLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 230 (250)
T ss_dssp CCCHHHHHHHHHHHHTTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHHHCCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHHHhhcC
Confidence 699999999988752124569999999999 78999999999999999863
No 64
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=88.94 E-value=0.4 Score=47.95 Aligned_cols=36 Identities=25% Similarity=0.475 Sum_probs=31.0
Q ss_pred HHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 010521 452 EIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALE 490 (508)
Q Consensus 452 ~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALk 490 (508)
.|..++| .+++|..|||+.||||+.|||+.+..+.+
T Consensus 12 ~ia~l~~---~~~~~~~ela~~l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 12 KIAQLYY---EQDMTQAQIARELGIYRTTISRLLKRGRE 47 (315)
T ss_dssp HHHHHHH---TSCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 4667777 78899999999999999999988887654
No 65
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=88.41 E-value=0.37 Score=39.41 Aligned_cols=25 Identities=12% Similarity=0.221 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.+.|..|||+.||||+++|++++++
T Consensus 29 ~g~sa~eLAk~LgiSk~aVr~~L~~ 53 (82)
T 1oyi_A 29 EGATAAQLTRQLNMEKREVNKALYD 53 (82)
T ss_dssp STEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4599999999999999999987765
No 66
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=88.30 E-value=0.55 Score=43.58 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=32.2
Q ss_pred cCCHHHHHHHhHHhcc---CCCCCCHHHHHHHHCCCHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGL---DKECLTWEDISKRIGLSRERVRQVG 485 (508)
Q Consensus 445 ~Lp~rER~VI~LryGL---d~eg~TleEIAe~LgIS~erVrqi~ 485 (508)
.|+++|++|+..-... .+.+.|.+|||+.||+|..+|++++
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l 45 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHL 45 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHH
Confidence 5899999999875422 1346899999999999998876554
No 67
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=88.00 E-value=0.54 Score=38.09 Aligned_cols=38 Identities=21% Similarity=0.380 Sum_probs=25.8
Q ss_pred HHHHHhHHhccC-CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 450 EREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 450 ER~VI~LryGLd-~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
++.|+.+-...+ ++..|..|||+.||||+.+|++.+++
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~ 50 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYS 50 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 445554433211 24689999999999999998755443
No 68
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=87.72 E-value=0.6 Score=36.07 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=26.4
Q ss_pred CCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010521 446 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 486 (508)
Q Consensus 446 Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~ 486 (508)
+++..+.||.+--. +..++|..|||+.+|+|+.+|.+++.
T Consensus 8 m~~~~~~IL~~L~~-~~~~~s~~eLA~~lglsr~tv~~~l~ 47 (67)
T 2heo_A 8 GDNLEQKILQVLSD-DGGPVAIFQLVKKCQVPKKTLNQVLY 47 (67)
T ss_dssp -CHHHHHHHHHHHH-HCSCEEHHHHHHHHCSCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH-cCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 34444455554320 13568999999999999999975543
No 69
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=87.54 E-value=0.96 Score=38.87 Aligned_cols=42 Identities=12% Similarity=0.229 Sum_probs=33.0
Q ss_pred ccCCHHHHHHHhHHhccCCCC--CCHHHHHHHHCCCHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKEC--LTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg--~TleEIAe~LgIS~erVrqi~~r 487 (508)
-.|++.+..|+..-.. ..+ +|..|||+.+|++++||.+.+.+
T Consensus 22 ~gLt~~e~~il~~L~~--~~~~~~t~~eLa~~l~~s~sTV~r~L~~ 65 (123)
T 3r0a_A 22 LNLTKADLNVMKSFLN--EPDRWIDTDALSKSLKLDVSTVQRSVKK 65 (123)
T ss_dssp HTCCHHHHHHHHHHHH--STTCCEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH--CCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4799999999876542 233 89999999999999999655443
No 70
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=87.31 E-value=0.94 Score=39.71 Aligned_cols=41 Identities=20% Similarity=0.208 Sum_probs=32.3
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|++.++.||.+-.. ....|..|||+.+|+|+.+|++++.+
T Consensus 2 ~ld~~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~ 42 (144)
T 2cfx_A 2 KLDQIDLNIIEELKK--DSRLSMRELGRKIKLSPPSVTERVRQ 42 (144)
T ss_dssp CCCHHHHHHHHHHHH--CSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 378888888876431 35699999999999999999766544
No 71
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=86.92 E-value=0.71 Score=37.67 Aligned_cols=40 Identities=15% Similarity=0.284 Sum_probs=30.3
Q ss_pred CCHHHHH-HHhHHhccCCC-CCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 446 LGERERE-IIRLYYGLDKE-CLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 446 Lp~rER~-VI~LryGLd~e-g~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.++.++. |+.++. .. +.|..+||+.+|||+.||.++..+.
T Consensus 6 ys~e~k~~~v~~~~---~~~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 6 YSEEFKRDAVALYE---NSDGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCHHHHHHHHHHHT---TGGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---HcCCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 4555554 555554 24 7999999999999999999998653
No 72
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=86.77 E-value=0.75 Score=34.29 Aligned_cols=47 Identities=6% Similarity=0.088 Sum_probs=31.6
Q ss_pred CCHHHHHHHhHHhccCCCCCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 010521 446 LGEREREIIRLYYGLDKECLT----WEDISKRIGLSRERVRQVGLVALEKLKHAA 496 (508)
Q Consensus 446 Lp~rER~VI~LryGLd~eg~T----leEIAe~LgIS~erVrqi~~rALkKLR~~L 496 (508)
.++..+.-+...+ ..+.| ..+||..+||++++|+++... ...++..+
T Consensus 6 ys~efK~~~~~~~---~~g~s~~~~~~~vA~~~gIs~~tl~~W~~~-~~~~~~~~ 56 (59)
T 2glo_A 6 FTPHFKLQVLESY---RNDNDCKGNQRATARKYNIHRRQIQKWLQC-ESNLRSSV 56 (59)
T ss_dssp CCHHHHHHHHHHH---HHCTTTTTCHHHHHHHTTSCHHHHHHHHTT-HHHHHHHH
T ss_pred CCHHHHHHHHHHH---HcCCCcchHHHHHHHHHCcCHHHHHHHHHH-HHHHHHHH
Confidence 3444444333333 35678 999999999999999999764 44444433
No 73
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=86.46 E-value=1.3 Score=39.06 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=32.3
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|++.++.||.+-.. ....|+.|||+.+|+|+.+|++++.+
T Consensus 4 ~ld~~~~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~ 44 (151)
T 2cyy_A 4 PLDEIDKKIIKILQN--DGKAPLREISKITGLAESTIHERIRK 44 (151)
T ss_dssp CCCHHHHHHHHHHHH--CTTCCHHHHHHHHCSCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 478888888875431 34689999999999999999766544
No 74
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=86.37 E-value=2.2 Score=35.82 Aligned_cols=39 Identities=18% Similarity=0.158 Sum_probs=31.5
Q ss_pred CCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 446 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 446 Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++.+..||..-. ..+.|..|||+.+|+|+.+|++.+.+
T Consensus 30 ~~~~~~~il~~L~---~~~~s~~ela~~l~is~stvsr~l~~ 68 (119)
T 2lkp_A 30 ATPSRLMILTQLR---NGPLPVTDLAEAIGMEQSAVSHQLRV 68 (119)
T ss_dssp CCHHHHHHHHHHH---HCCCCHHHHHHHHSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---HCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5677888887765 35799999999999999999866554
No 75
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=86.33 E-value=1.2 Score=39.13 Aligned_cols=42 Identities=12% Similarity=0.262 Sum_probs=32.5
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..|++.++.||.+--. ....|..|||+.+|+|+.+|++++.+
T Consensus 5 ~~ld~~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~ 46 (151)
T 2dbb_A 5 RKLDRVDMQLVKILSE--NSRLTYRELADILNTTRQRIARRIDK 46 (151)
T ss_dssp -CCCHHHHHHHHHHHH--CTTCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3588889888875431 35699999999999999999766544
No 76
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=86.28 E-value=1.2 Score=38.03 Aligned_cols=40 Identities=23% Similarity=0.345 Sum_probs=32.8
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|++.|..|+..-. ..+.|..|||+.+|+++++|++++.+
T Consensus 35 ~lt~~~~~iL~~l~---~~~~t~~eLa~~l~~s~~tvs~~l~~ 74 (146)
T 3tgn_A 35 ALTNTQEHILMLLS---EESLTNSELARRLNVSQAAVTKAIKS 74 (146)
T ss_dssp CCCHHHHHHHHHHT---TCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---hCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 57888888887765 34499999999999999999876654
No 77
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=86.16 E-value=1.9 Score=39.28 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=40.7
Q ss_pred HHHHHHHHHHccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 434 LKDEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 434 l~e~L~~~L~~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
+...+...+ ..|++.|..||..-+....++.|..+||+.+|+++++|.+++.+-
T Consensus 28 ~~~~~~~~~-~~lt~~q~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~L 81 (189)
T 3nqo_A 28 IQIEGDKYF-GILTSRQYMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANL 81 (189)
T ss_dssp HHHHHHHHH-CSSCHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHH-ccCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344455555 679999999987765222357999999999999999998766543
No 78
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=86.07 E-value=1.2 Score=38.47 Aligned_cols=40 Identities=23% Similarity=0.424 Sum_probs=30.7
Q ss_pred CCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 446 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 446 Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
|++.++.|+..-.. ....|..|||+.+|+|+.+|++.+.+
T Consensus 2 ld~~~~~il~~L~~--~~~~~~~ela~~lg~s~~tv~~~l~~ 41 (141)
T 1i1g_A 2 IDERDKIILEILEK--DARTPFTEIAKKLGISETAVRKRVKA 41 (141)
T ss_dssp CCSHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 67778888875431 35689999999999999999765543
No 79
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=86.01 E-value=1.3 Score=35.90 Aligned_cols=43 Identities=12% Similarity=0.103 Sum_probs=33.2
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..|++.+..+|...+. ...+.|..|||+.+|+|+.+|++++.+
T Consensus 17 ~~l~~~~~~~l~~l~~-~~~~~t~~ela~~l~is~~tv~~~l~~ 59 (109)
T 2d1h_A 17 YKITDTDVAVLLKMVE-IEKPITSEELADIFKLSKTTVENSLKK 59 (109)
T ss_dssp HTCCHHHHHHHHHHHH-HCSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHH-cCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4789998888755441 135799999999999999999765543
No 80
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=85.98 E-value=1.1 Score=39.40 Aligned_cols=42 Identities=21% Similarity=0.230 Sum_probs=32.8
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..|++.++.||.+-.. ....|..|||+.+|+|+.+|++++.+
T Consensus 3 ~~ld~~~~~iL~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~ 44 (150)
T 2w25_A 3 EALDDIDRILVRELAA--DGRATLSELATRAGLSVSAVQSRVRR 44 (150)
T ss_dssp -CCCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3588889888876431 35699999999999999999766554
No 81
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=85.96 E-value=1.4 Score=38.86 Aligned_cols=41 Identities=17% Similarity=0.319 Sum_probs=32.4
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|++.++.||.+-.. ....|..|||+.+|+|+.+|++++.+
T Consensus 5 ~ld~~d~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~ 45 (152)
T 2cg4_A 5 LIDNLDRGILEALMG--NARTAYAELAKQFGVSPETIHVRVEK 45 (152)
T ss_dssp CCCHHHHHHHHHHHH--CTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 478888888876431 35689999999999999999876554
No 82
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=85.95 E-value=1.1 Score=36.24 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=33.1
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|++.+..|+..-.. ..+.|..|||+.+|+++.+|.+.+.+
T Consensus 17 ~l~~~~~~il~~l~~--~~~~s~~ela~~l~is~~tv~~~l~~ 57 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLE--RGGMRVSEIARELDLSARFVRDRLKV 57 (109)
T ss_dssp CCCHHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 688999888876541 36799999999999999999766554
No 83
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=85.90 E-value=1.2 Score=37.00 Aligned_cols=38 Identities=24% Similarity=0.163 Sum_probs=28.7
Q ss_pred HHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 448 EREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 448 ~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
+|...|+.+.. ..+.|..+||+.+|||..||+..+..-
T Consensus 7 ~R~~~I~~~l~---~~~~ti~dlA~~~gVS~~TVsR~L~~~ 44 (93)
T 2l0k_A 7 ERTIKIGKYIV---ETKKTVRVIAKEFGVSKSTVHKDLTER 44 (93)
T ss_dssp HHHHHHHHHHH---HHCCCHHHHHHHHTSCHHHHHHHHTTH
T ss_pred HHHHHHHHHHH---HcCCCHHHHHHHHCCCHHHHHHHHcCC
Confidence 34455555443 345899999999999999999988753
No 84
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=85.80 E-value=0.39 Score=42.80 Aligned_cols=40 Identities=23% Similarity=0.097 Sum_probs=30.5
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++..++.-|...+ .+|+|..+||+.||||+.||++++.+
T Consensus 25 ~~s~e~r~~ii~l~---~~G~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 25 PLPEVVRQRIVDLA---HQGVRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp SSCHHHHHHHHHHH---HHTCCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 45555555444444 36899999999999999999998764
No 85
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=85.77 E-value=0.7 Score=35.73 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.5
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 465 LTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 465 ~TleEIAe~LgIS~erVrqi~~rA 488 (508)
+|+.|||+.+|||+.||+++++.-
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng~ 24 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVINGK 24 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHTC
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCC
Confidence 488999999999999999998743
No 86
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=85.28 E-value=1.3 Score=38.73 Aligned_cols=40 Identities=10% Similarity=0.188 Sum_probs=30.6
Q ss_pred CCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 446 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 446 Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
|++.++.||.+--. ....|..|||+.+|+|+++|++++.+
T Consensus 1 ld~~~~~il~~L~~--~~~~~~~ela~~lg~s~~tv~~~l~~ 40 (150)
T 2pn6_A 1 MDEIDLRILKILQY--NAKYSLDEIAREIRIPKATLSYRIKK 40 (150)
T ss_dssp CCHHHHHHHHHHTT--CTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 56777788765431 24689999999999999999766544
No 87
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=85.23 E-value=1.3 Score=39.53 Aligned_cols=41 Identities=22% Similarity=0.218 Sum_probs=32.5
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|++.++.||.+-.. ....|..|||+.+|+|+.+|++++.+
T Consensus 7 ~ld~~~~~il~~L~~--~~~~s~~ela~~lg~s~~tv~~~l~~ 47 (162)
T 2p5v_A 7 TLDKTDIKILQVLQE--NGRLTNVELSERVALSPSPCLRRLKQ 47 (162)
T ss_dssp CCCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 478888888876431 34689999999999999999876554
No 88
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=85.05 E-value=3.3 Score=34.95 Aligned_cols=44 Identities=9% Similarity=0.041 Sum_probs=34.4
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..|+..-+.-+..+.|..|||+.+|+++.+|.+.+.+-
T Consensus 31 ~lt~~~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~L 74 (141)
T 3bro_A 31 DLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRM 74 (141)
T ss_dssp TCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHH
Confidence 68999999887765322237999999999999999998665543
No 89
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=85.03 E-value=4.1 Score=34.58 Aligned_cols=77 Identities=18% Similarity=0.188 Sum_probs=48.3
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHhCccccccccCCCCCCCCCCCccccccccccCCCCccchHHHHHHHHHHHHHHHccC
Q 010521 367 PSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLIIVTL 446 (508)
Q Consensus 367 Pt~eEIA~~Lgis~e~v~~~l~~~~~~~SLD~~~~~~~~~~~~~~l~d~i~d~~~e~~Pe~~ve~~el~e~L~~~L~~~L 446 (508)
-+..+||+.+|++..+|.......... +... . . .-| ..|
T Consensus 23 ~s~~~ia~~lgis~~Tv~r~~~~~~~~------------g~~~------~--~---gr~------------------~~l 61 (141)
T 1u78_A 23 VSLHEMSRKISRSRHCIRVYLKDPVSY------------GTSK------R--A---PRR------------------KAL 61 (141)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHSGGGT------------TCCC------C--C---CCC------------------CSS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHccccc------------CCcC------C--C---CCC------------------CcC
Confidence 478999999999999999987654211 0000 0 0 011 122
Q ss_pred CHHHH-HHHhHHhccCCCCCCHHHHHHHHC--CCHHHHHHHHHH
Q 010521 447 GERER-EIIRLYYGLDKECLTWEDISKRIG--LSRERVRQVGLV 487 (508)
Q Consensus 447 p~rER-~VI~LryGLd~eg~TleEIAe~Lg--IS~erVrqi~~r 487 (508)
++.+. .|+.+.- ....|..+|+..|| +|.+||.+++.+
T Consensus 62 ~~~~~~~i~~~~~---~~~~s~~~i~~~lg~~~s~~tV~r~l~~ 102 (141)
T 1u78_A 62 SVRDERNVIRAAS---NSCKTARDIRNELQLSASKRTILNVIKR 102 (141)
T ss_dssp CHHHHHHHHHHHH---HCCCCHHHHHHHTTCCSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh---CCCCCHHHHHHHHCCCccHHHHHHHHHH
Confidence 33222 2332211 24589999999999 899999998875
No 90
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=84.92 E-value=2.4 Score=35.10 Aligned_cols=41 Identities=22% Similarity=0.207 Sum_probs=30.2
Q ss_pred ccCC-HHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 444 VTLG-EREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 444 ~~Lp-~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..|. +....||.+-. ..++|..|||+.+|+|+++|++.+..
T Consensus 21 ~~l~~~~r~~IL~~L~---~~~~~~~ela~~l~is~stvs~~L~~ 62 (106)
T 1r1u_A 21 KALGDYNRIRIMELLS---VSEASVGHISHQLNLSQSNVSHQLKL 62 (106)
T ss_dssp HHTCSHHHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3444 55566776544 46789999999999999999866543
No 91
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=84.74 E-value=1.5 Score=39.41 Aligned_cols=41 Identities=22% Similarity=0.345 Sum_probs=31.5
Q ss_pred CCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 446 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 446 Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
|++.++.||.+--. ....|+.|||+.+|+|+.+|+.++.+-
T Consensus 1 lD~~d~~il~~L~~--~~~~s~~~la~~lg~s~~tv~~rl~~L 41 (162)
T 3i4p_A 1 MDRLDRKILRILQE--DSTLAVADLAKKVGLSTTPCWRRIQKM 41 (162)
T ss_dssp CCHHHHHHHHHHTT--CSCSCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--CCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 56778888876531 246899999999999999998766553
No 92
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=84.37 E-value=2.3 Score=36.53 Aligned_cols=48 Identities=13% Similarity=-0.018 Sum_probs=33.8
Q ss_pred HHHHHHHHH-ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 435 KDEVNKLII-VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 435 ~e~L~~~L~-~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
...+...+. ..+++.+-.-++... ++|++++|+.+|+|+.+|++++.-
T Consensus 59 ~~e~~r~~~~~~~~~~~l~~~R~~~-----glsq~~la~~~g~s~~~i~~~E~g 107 (133)
T 3o9x_A 59 VKAFRASVNAETVAPEFIVKVRKKL-----SLTQKEASEIFGGGVNAFSRYEKG 107 (133)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHT-----TCCHHHHHHHHCSCTTHHHHHHHT
T ss_pred HHHHHHHHhhcCCCHHHHHHHHHHc-----CCCHHHHHHHHCCCHHHHHHHHCC
Confidence 334444442 335555544555444 699999999999999999999874
No 93
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=84.30 E-value=2.9 Score=35.44 Aligned_cols=53 Identities=13% Similarity=0.197 Sum_probs=38.6
Q ss_pred HHHHHHHH-ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 436 DEVNKLII-VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 436 e~L~~~L~-~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
..+...+. ..|++.|..|+..-+.-+.++.|..|||+.+|+++++|.+++.+-
T Consensus 18 ~~~~~~~~~~~lt~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~L 71 (139)
T 3eco_A 18 QKADQKLEQFDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNL 71 (139)
T ss_dssp HHHHHHHGGGTCCHHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHH
Confidence 34444441 268999999988765322248999999999999999998766553
No 94
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=84.25 E-value=2 Score=36.73 Aligned_cols=52 Identities=8% Similarity=0.166 Sum_probs=36.5
Q ss_pred HHHHHHHHH---ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 435 KDEVNKLII---VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 435 ~e~L~~~L~---~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
...+...+. ..|++.|..||..-+. ..+.|..|||+.+|+++++|.+++.+-
T Consensus 21 ~~~~~~~l~~~~~~lt~~~~~vL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~L 75 (142)
T 3ech_A 21 RTRIQSELDCQRLDLTPPDVHVLKLIDE--QRGLNLQDLGRQMCRDKALITRKIREL 75 (142)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHH--TTTCCHHHHHHHHC---CHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHh--CCCcCHHHHHHHhCCCHHHHHHHHHHH
Confidence 344555552 2599999999887652 358999999999999999998776553
No 95
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=83.99 E-value=2.3 Score=36.06 Aligned_cols=61 Identities=15% Similarity=0.070 Sum_probs=43.7
Q ss_pred HHHHHHHHccCCHHHHHHHhHHhcc--CCCCCCHHHHHHHHCCCHHHHHHHHHH----HHHHHHHHHH
Q 010521 436 DEVNKLIIVTLGEREREIIRLYYGL--DKECLTWEDISKRIGLSRERVRQVGLV----ALEKLKHAAR 497 (508)
Q Consensus 436 e~L~~~L~~~Lp~rER~VI~LryGL--d~eg~TleEIAe~LgIS~erVrqi~~r----ALkKLR~~L~ 497 (508)
..|.... ..|++.|+.|......- ....+|..|||+..|+|..||.+.-++ +...||..+.
T Consensus 10 ~~i~~~~-~~ls~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kklG~~gf~efk~~l~ 76 (111)
T 2o3f_A 10 AIIQSMX-HXLPPSERKLADYILAHPHXAIESTVNEISALANSSDAAVIRLCXSLGLKGFQDLXMRVA 76 (111)
T ss_dssp HHHHHHG-GGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHTTCCHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHh-ccCCHHHHHHHHHHHHChHHHHhcCHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4566666 79999999988765411 013699999999999999999766543 3445555543
No 96
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=83.70 E-value=2.2 Score=34.50 Aligned_cols=37 Identities=19% Similarity=0.264 Sum_probs=28.0
Q ss_pred CHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010521 447 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 486 (508)
Q Consensus 447 p~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~ 486 (508)
++....|+.+-. ..++|..|||+.+|+|+.+|++.+.
T Consensus 22 ~~~r~~Il~~L~---~~~~~~~ela~~l~is~~tvs~~L~ 58 (98)
T 3jth_A 22 NERRLQILCMLH---NQELSVGELCAKLQLSQSALSQHLA 58 (98)
T ss_dssp SHHHHHHHHHTT---TSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHh---cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 555556665543 4678999999999999999976554
No 97
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=83.66 E-value=3.1 Score=33.96 Aligned_cols=38 Identities=11% Similarity=0.106 Sum_probs=28.2
Q ss_pred CHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 447 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 447 p~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
+|.-..||.+-. ..++|..|||+.+|+|+.+|++.+..
T Consensus 22 ~~~r~~Il~~L~---~~~~~~~ela~~l~is~~tvs~~L~~ 59 (102)
T 3pqk_A 22 HPVRLMLVCTLV---EGEFSVGELEQQIGIGQPTLSQQLGV 59 (102)
T ss_dssp SHHHHHHHHHHH---TCCBCHHHHHHHHTCCTTHHHHHHHH
T ss_pred CHHHHHHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 455555665544 45799999999999999999765543
No 98
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=83.57 E-value=0.79 Score=37.88 Aligned_cols=44 Identities=7% Similarity=0.066 Sum_probs=34.9
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..|++.|..|+..-+-.+.+|.+.+|||+.+|++..+|..++.+
T Consensus 16 ~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~~l~~~tvt~iLk~ 59 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILKN 59 (91)
T ss_dssp CCSCSSHHHHHHHHHHHCTTCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHcCCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 56888888888877633346899999999999999998755544
No 99
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=82.81 E-value=3.3 Score=34.95 Aligned_cols=42 Identities=12% Similarity=0.113 Sum_probs=34.3
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.+..|+..-+. ..+.|..|||+.+|+++++|.+.+.+-
T Consensus 28 ~l~~~~~~iL~~l~~--~~~~~~~ela~~l~is~~~vs~~l~~L 69 (142)
T 3bdd_A 28 GISLTRYSILQTLLK--DAPLHQLALQERLQIDRAAVTRHLKLL 69 (142)
T ss_dssp SSCHHHHHHHHHHHH--HCSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh--CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 699999998877652 357999999999999999998765543
No 100
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=82.75 E-value=1.9 Score=36.77 Aligned_cols=41 Identities=10% Similarity=-0.039 Sum_probs=34.5
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..|+..-+ ..+.|..|||+.+|+++++|.+.+.+-
T Consensus 34 ~l~~~~~~iL~~l~---~~~~~~~ela~~l~~s~~tvs~~l~~L 74 (146)
T 2gxg_A 34 NLSYLDFLVLRATS---DGPKTMAYLANRYFVTQSAITASVDKL 74 (146)
T ss_dssp TCCHHHHHHHHHHT---TSCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHh---cCCcCHHHHHHHhCCCchhHHHHHHHH
Confidence 68999999887765 578999999999999999998765543
No 101
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=82.70 E-value=1.9 Score=39.26 Aligned_cols=41 Identities=22% Similarity=0.293 Sum_probs=32.7
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|++.++.||.+--. ....|+.|||+.+|+|+.+|++++.+
T Consensus 24 ~ld~~d~~IL~~L~~--~~~~s~~eLA~~lglS~~tv~~rl~~ 64 (171)
T 2e1c_A 24 PLDEIDKKIIKILQN--DGKAPLREISKITGLAESTIHERIRK 64 (171)
T ss_dssp CCCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 588888888876431 24699999999999999999876544
No 102
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=82.61 E-value=4.9 Score=34.88 Aligned_cols=42 Identities=12% Similarity=0.075 Sum_probs=35.1
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..||..-+. ..+.|..|||+.+|+++.+|.+++.+-
T Consensus 46 ~lt~~~~~iL~~l~~--~~~~t~~ela~~l~is~~tvs~~l~~L 87 (162)
T 2fa5_A 46 GMAIPEWRVITILAL--YPGSSASEVSDRTAMDKVAVSRAVARL 87 (162)
T ss_dssp CCCHHHHHHHHHHHH--STTCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh--CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 699999998877652 368999999999999999998766554
No 103
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=82.45 E-value=1.8 Score=37.15 Aligned_cols=43 Identities=16% Similarity=0.075 Sum_probs=31.9
Q ss_pred cCCHHHHHHHhHHhcc--CCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGL--DKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 445 ~Lp~rER~VI~LryGL--d~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|++.+..+|..-+-+ ...+.|..+||+.+|+++.+|++.+.+
T Consensus 10 ~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~ 54 (139)
T 2x4h_A 10 NLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSH 54 (139)
T ss_dssp -CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHH
Confidence 5777777776655433 235789999999999999999866554
No 104
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=82.44 E-value=2.7 Score=34.49 Aligned_cols=45 Identities=22% Similarity=0.214 Sum_probs=32.7
Q ss_pred HHHHHHHccCCHHHHHHHh-HHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 437 EVNKLIIVTLGEREREIIR-LYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 437 ~L~~~L~~~Lp~rER~VI~-LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.+.++| -+|....|+. +.- ..++|..|||+.+|+|+++|++.+..
T Consensus 19 ~~~~aL---~~~~Rl~IL~~l~~---~~~~~~~ela~~l~is~stvs~hL~~ 64 (99)
T 2zkz_A 19 ELLKTM---AHPMRLKIVNELYK---HKALNVTQIIQILKLPQSTVSQHLCK 64 (99)
T ss_dssp HHHHHH---CSHHHHHHHHHHHH---HSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHh---CCHHHHHHHHHHHH---CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 444555 3566667773 332 35799999999999999999877654
No 105
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=82.42 E-value=3.1 Score=33.16 Aligned_cols=39 Identities=13% Similarity=0.059 Sum_probs=29.6
Q ss_pred CHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 447 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 447 p~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
++.+..|+..-. +..+.|..|||+.+|+|+++|++.+.+
T Consensus 23 ~~~~~~il~~l~--~~~~~s~~ela~~l~is~~tvs~~l~~ 61 (99)
T 3cuo_A 23 HPKRLLILCMLS--GSPGTSAGELTRITGLSASATSQHLAR 61 (99)
T ss_dssp SHHHHHHHHHHT--TCCSEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHH--hCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 566777776543 134799999999999999999766543
No 106
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=82.10 E-value=1.9 Score=39.14 Aligned_cols=42 Identities=19% Similarity=0.262 Sum_probs=32.3
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..|++.++.||.+--. ....|..|||+.+|+|+.+|++++.+
T Consensus 13 ~~ld~~d~~IL~~L~~--~~~~s~~eLA~~lglS~~tv~~~l~~ 54 (171)
T 2ia0_A 13 IHLDDLDRNILRLLKK--DARLTISELSEQLKKPESTIHFRIKK 54 (171)
T ss_dssp -CCCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4678888888876431 34689999999999999999876554
No 107
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=82.10 E-value=3.4 Score=35.07 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=33.9
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|++.+..|+.+-+ +...++|..|||+.+|+++++|.+++.+
T Consensus 23 gl~~~~~~il~~L~-~~~~~~t~~ela~~l~~~~stvs~~l~~ 64 (152)
T 1ku9_A 23 GLNKSVGAVYAILY-LSDKPLTISDIMEELKISKGNVSMSLKK 64 (152)
T ss_dssp TCCHHHHHHHHHHH-HCSSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCChhHHHHHHHHH-HcCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 68999998887653 2236799999999999999999766654
No 108
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=82.06 E-value=2.2 Score=36.04 Aligned_cols=41 Identities=2% Similarity=0.024 Sum_probs=33.7
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|++.|..|+..-+. ..+.|..|||+.+|+++++|.+.+.+
T Consensus 26 ~l~~~~~~iL~~l~~--~~~~~~~ela~~l~~s~~tvs~~l~~ 66 (138)
T 3bpv_A 26 NLTDAQVACLLRIHR--EPGIKQDELATFFHVDKGTIARTLRR 66 (138)
T ss_dssp TCCHHHHHHHHHHHH--STTCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 688988888877652 36799999999999999999876654
No 109
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=81.67 E-value=5 Score=34.30 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=33.2
Q ss_pred HHHHHHHHccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 436 DEVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 436 e~L~~~L~~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..+.++| -++....||.+-. ..+++..|||+.+|+|+++|++.+..
T Consensus 37 ~~~~kaL---~~~~rl~IL~~L~---~~~~s~~ela~~lgis~stvs~~L~~ 82 (122)
T 1r1t_A 37 AEFFAVL---ADPNRLRLLSLLA---RSELCVGDLAQAIGVSESAVSHQLRS 82 (122)
T ss_dssp HHHHHHH---CCHHHHHHHHHHT---TCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHh---CCHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3444444 3566667776654 35799999999999999999866543
No 110
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=81.30 E-value=3.1 Score=35.16 Aligned_cols=62 Identities=11% Similarity=0.177 Sum_probs=45.2
Q ss_pred HHHHHHHHHccCCHHHHHHHhHHhcc--CCCCCCHHHHHHHHCCCHHHHHHHHH----HHHHHHHHHHH
Q 010521 435 KDEVNKLIIVTLGEREREIIRLYYGL--DKECLTWEDISKRIGLSRERVRQVGL----VALEKLKHAAR 497 (508)
Q Consensus 435 ~e~L~~~L~~~Lp~rER~VI~LryGL--d~eg~TleEIAe~LgIS~erVrqi~~----rALkKLR~~L~ 497 (508)
...|.... ..|++.|+.|.....-- ....+|..|||+..|+|..||-+.-+ .+..-||..+.
T Consensus 5 ~~~I~~~~-~~lt~~e~~ia~yil~~~~~~~~~si~elA~~~~vS~aTv~Rf~kkLGf~gf~efk~~l~ 72 (107)
T 3iwf_A 5 LYKIDNQY-PYFTKNEKKIAQFILNYPHKVVNMTSQEIANQLETSSTSIIRLSKKVTPGGFNELKTRLS 72 (107)
T ss_dssp HHHHHHHG-GGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHSTTHHHHHHHHHH
T ss_pred HHHHHHHH-HhcCHHHHHHHHHHHhCHHHHHHCCHHHHHHHHCCCHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 34566667 89999999998765421 12469999999999999999976544 35566665554
No 111
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=81.23 E-value=3 Score=35.13 Aligned_cols=41 Identities=5% Similarity=-0.044 Sum_probs=33.8
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|++.|..|+..-+. ..+.|..|||+.+|+++++|.+.+.+
T Consensus 35 ~l~~~~~~iL~~l~~--~~~~t~~ela~~l~~~~~tvs~~l~~ 75 (140)
T 2nnn_A 35 GLTPTQWAALVRLGE--TGPCPQNQLGRLTAMDAATIKGVVER 75 (140)
T ss_dssp CCCHHHHHHHHHHHH--HSSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 689999998877542 35799999999999999999876554
No 112
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=81.10 E-value=3.1 Score=35.53 Aligned_cols=51 Identities=10% Similarity=0.042 Sum_probs=38.0
Q ss_pred HHHHHHHH-ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 436 DEVNKLII-VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 436 e~L~~~L~-~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
..+...+. ..|++.|..|+..-+. .++.|..|||+.+|+++++|.+++.+-
T Consensus 23 ~~~~~~~~~~glt~~q~~vL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~L 74 (140)
T 3hsr_A 23 KKYTNYLKEYDLTYTGYIVLMAIEN--DEKLNIKKLGERVFLDSGTLTPLLKKL 74 (140)
T ss_dssp HHHHHHHGGGTCCHHHHHHHHHSCT--TCEEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH--cCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 33444441 3699999988877652 457999999999999999998766554
No 113
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=81.06 E-value=5.2 Score=34.53 Aligned_cols=42 Identities=10% Similarity=0.105 Sum_probs=34.6
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..||..-+. ..+.|..+||+.+|+++.+|.+++.+-
T Consensus 40 ~lt~~~~~iL~~l~~--~~~~t~~ela~~l~i~~~tvs~~l~~L 81 (155)
T 3cdh_A 40 GLRVPEWRVLACLVD--NDAMMITRLAKLSLMEQSRMTRIVDQM 81 (155)
T ss_dssp TCCHHHHHHHHHHSS--CSCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 699999999877652 357999999999999999998766543
No 114
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=80.82 E-value=1.2 Score=36.93 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=29.7
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVG 485 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~ 485 (508)
..+.+....|+...+- .++.+|..|||+.+|+|+.+|++.+
T Consensus 14 ~~~~~~~l~Il~~l~~-~g~~~s~~eLa~~lgvs~~tV~~~L 54 (110)
T 1q1h_A 14 SLLGDDVIDVLRILLD-KGTEMTDEEIANQLNIKVNDVRKKL 54 (110)
T ss_dssp TTSCSTTHHHHHHHHH-HCSCBCHHHHHHTTTSCHHHHHHHH
T ss_pred HHcChHHHHHHHHHHH-cCCCCCHHHHHHHHCcCHHHHHHHH
Confidence 4456666777765431 1346899999999999999997544
No 115
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=80.58 E-value=5.1 Score=34.51 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=35.4
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
..|++.|..||..-+. .++.|..|||+.+|+++++|.+++.+-
T Consensus 37 ~~lt~~q~~iL~~l~~--~~~~~~~eLa~~l~~~~~~vs~~l~~L 79 (149)
T 4hbl_A 37 FGITYSQYLVMLTLWE--ENPQTLNSIGRHLDLSSNTLTPMLKRL 79 (149)
T ss_dssp TTCCHHHHHHHHHHHH--SSSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3699999998877652 468999999999999999998766554
No 116
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=80.55 E-value=1.9 Score=34.02 Aligned_cols=26 Identities=19% Similarity=0.181 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..++|+.++|+.+|||+.+|+++++.
T Consensus 29 ~~glsq~elA~~~gis~~~is~~e~g 54 (83)
T 2a6c_A 29 NSGLTQFKAAELLGVTQPRVSDLMRG 54 (83)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35799999999999999999999864
No 117
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=80.41 E-value=4.2 Score=35.00 Aligned_cols=42 Identities=14% Similarity=0.155 Sum_probs=34.6
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..|+..-+. ..+.|..|||+.+|+++++|.+++.+-
T Consensus 38 ~lt~~~~~iL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~L 79 (154)
T 2qww_A 38 GLTIQQLAMINVIYS--TPGISVADLTKRLIITGSSAAANVDGL 79 (154)
T ss_dssp TCCHHHHHHHHHHHH--STTEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 699999998877652 357999999999999999998766553
No 118
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=80.34 E-value=2.6 Score=36.12 Aligned_cols=42 Identities=21% Similarity=0.236 Sum_probs=34.0
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..|+..-+. ..+.|..|||+.+|+++++|.+++.+-
T Consensus 37 ~l~~~~~~iL~~l~~--~~~~t~~ela~~l~~~~~tvs~~l~~L 78 (148)
T 3nrv_A 37 GIGMTEWRIISVLSS--ASDCSVQKISDILGLDKAAVSRTVKKL 78 (148)
T ss_dssp TCCHHHHHHHHHHHH--SSSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc--CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 588888888876542 358999999999999999998766554
No 119
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=80.28 E-value=2.5 Score=39.29 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=32.4
Q ss_pred CCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 446 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 446 Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
+++.++.|+.+-. ..++|..|||+.+|+|+++|++++.+
T Consensus 18 ~d~~~~~IL~~L~---~~~~s~~eLA~~lglS~stv~~~l~~ 56 (192)
T 1uly_A 18 LEDTRRKILKLLR---NKEMTISQLSEILGKTPQTIYHHIEK 56 (192)
T ss_dssp HSHHHHHHHHHHT---TCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5788888887764 35799999999999999999876654
No 120
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=80.27 E-value=4.7 Score=33.51 Aligned_cols=37 Identities=16% Similarity=0.113 Sum_probs=27.7
Q ss_pred HHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 448 EREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 448 ~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
+....||.+-. ..++|..|||+.+|+|+++|++.+..
T Consensus 25 ~~r~~IL~~L~---~~~~s~~eLa~~lgis~stvs~~L~~ 61 (108)
T 2kko_A 25 GRRLQILDLLA---QGERAVEAIATATGMNLTTASANLQA 61 (108)
T ss_dssp STTHHHHHHHT---TCCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHH---cCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 33455666543 46789999999999999999866543
No 121
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=80.21 E-value=1.7 Score=33.96 Aligned_cols=26 Identities=4% Similarity=0.276 Sum_probs=23.7
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..++|++++|+.+|||+.+|++++..
T Consensus 21 ~~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 21 EKGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46799999999999999999999875
No 122
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=80.18 E-value=4.8 Score=33.85 Aligned_cols=52 Identities=8% Similarity=0.106 Sum_probs=38.4
Q ss_pred HHHHHHHHH-ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 435 KDEVNKLII-VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 435 ~e~L~~~L~-~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
...+.+.+. ..|++.|..|+..-+. ..+.|..+||+.+|+++++|.+++.+-
T Consensus 20 ~~~~~~~~~~~~lt~~~~~iL~~l~~--~~~~~~~~la~~l~~~~~tvs~~l~~L 72 (138)
T 1jgs_A 20 DRLLNEYLSPLDITAAQFKVLCSIRC--AACITPVELKKVLSVDLGALTRMLDRL 72 (138)
T ss_dssp HHHHHHHHTTTTSCHHHHHHHHHHHH--HSSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCHHHHHHHHHHHh--cCCCCHHHHHHHHCCChHHHHHHHHHH
Confidence 334444441 3689999998877652 357899999999999999998766553
No 123
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=80.11 E-value=3.9 Score=35.69 Aligned_cols=53 Identities=17% Similarity=0.058 Sum_probs=38.3
Q ss_pred HHHHHHHH-ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 436 DEVNKLII-VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 436 e~L~~~L~-~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
..+...+. -.|+..|-.|+.+-+.-...++|..|||+.+++++++|.+++.+-
T Consensus 22 ~~~~~~l~~~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~L 75 (147)
T 4b8x_A 22 GEVDAVVKPYGLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRL 75 (147)
T ss_dssp HHHHHHHGGGTCCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444441 259999999887655222346899999999999999998776653
No 124
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=79.73 E-value=2.2 Score=36.28 Aligned_cols=44 Identities=16% Similarity=0.108 Sum_probs=32.0
Q ss_pred cCCHHHH-HHHhHHhccCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010521 445 TLGERER-EIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEK 491 (508)
Q Consensus 445 ~Lp~rER-~VI~LryGLd~eg~-TleEIAe~LgIS~erVrqi~~rALkK 491 (508)
.+++.++ +||.++. ..|. +..+||+.|||+++||+.++...-..
T Consensus 7 ~~t~e~K~~iv~~~~---~~g~~~~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 7 QLTFREKSRIIQEVE---ENPDLRKGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp CCCHHHHHHHHHHHH---HCTTSCHHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred eCCHHHHHHHHHHHH---HCCCCcHHHHHHHhCCCHHHHHHHHhchhhh
Confidence 4677776 4666654 3454 45599999999999999998765443
No 125
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=79.60 E-value=1.7 Score=31.89 Aligned_cols=25 Identities=8% Similarity=0.226 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++|++++|+.+|+|+.+|++++..
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~g 37 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEKN 37 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999874
No 126
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=79.58 E-value=1.9 Score=32.18 Aligned_cols=25 Identities=8% Similarity=0.239 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++|+.++|+.+|||+.+|++++..
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5799999999999999999998863
No 127
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=79.25 E-value=3.3 Score=35.26 Aligned_cols=42 Identities=10% Similarity=0.059 Sum_probs=34.5
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..|+..-+. ..+.|..|||+.+|+++++|.+++.+-
T Consensus 34 ~lt~~~~~iL~~l~~--~~~~t~~eLa~~l~~~~~~vs~~l~~L 75 (143)
T 3oop_A 34 DVTPEQWSVLEGIEA--NEPISQKEIALWTKKDTPTVNRIVDVL 75 (143)
T ss_dssp SSCHHHHHHHHHHHH--HSSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCcCHHHHHHHHCCCHhhHHHHHHHH
Confidence 589999998877552 368999999999999999998766553
No 128
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=79.23 E-value=2.6 Score=35.88 Aligned_cols=42 Identities=12% Similarity=0.099 Sum_probs=34.0
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..|+..-+. ..+.|..+||+.+|+++.+|..++.+-
T Consensus 30 ~l~~~~~~iL~~l~~--~~~~~~~~la~~l~~s~~tvs~~l~~L 71 (145)
T 2a61_A 30 GITPAQFDILQKIYF--EGPKRPGELSVLLGVAKSTVTGLVKRL 71 (145)
T ss_dssp TCCHHHHHHHHHHHH--HCCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCchhHHHHHHHH
Confidence 589999888877652 357999999999999999998766543
No 129
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=79.22 E-value=2 Score=31.86 Aligned_cols=25 Identities=12% Similarity=0.290 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++|+.++|+.+|||+.+|++++..
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999998764
No 130
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=79.11 E-value=4.4 Score=31.79 Aligned_cols=25 Identities=12% Similarity=0.109 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.+.|..|||+.+|+|+.+|++.+..
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~ 37 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLL 37 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4699999999999999999765543
No 131
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=78.69 E-value=7.3 Score=31.35 Aligned_cols=36 Identities=19% Similarity=0.275 Sum_probs=28.0
Q ss_pred CHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010521 447 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 486 (508)
Q Consensus 447 p~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~ 486 (508)
++....||.+- ..++|..|||+.+|+|+.+|++.+.
T Consensus 30 ~~~r~~Il~~L----~~~~~~~eLa~~l~is~~tv~~~L~ 65 (96)
T 1y0u_A 30 NPVRRKILRML----DKGRSEEEIMQTLSLSKKQLDYHLK 65 (96)
T ss_dssp CHHHHHHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred CHHHHHHHHHH----cCCCCHHHHHHHHCcCHHHHHHHHH
Confidence 55666666654 2569999999999999999986554
No 132
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=78.64 E-value=1.3 Score=34.50 Aligned_cols=25 Identities=16% Similarity=0.303 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++|+.++|+.+|||+.+|+++++.
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~g 48 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFNG 48 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 4689999999999999999999864
No 133
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=78.63 E-value=5.4 Score=34.12 Aligned_cols=42 Identities=10% Similarity=0.054 Sum_probs=34.4
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..|+..-+. ..+.|..+||+.+|+++++|.+.+.+-
T Consensus 37 ~lt~~~~~iL~~l~~--~~~~t~~ela~~l~~~~~~vs~~l~~L 78 (152)
T 3bj6_A 37 GVTVGQRAILEGLSL--TPGATAPQLGAALQMKRQYISRILQEV 78 (152)
T ss_dssp TCCHHHHHHHHHHHH--STTEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh--CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 699999998877652 357999999999999999998766543
No 134
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=78.55 E-value=3.8 Score=35.25 Aligned_cols=43 Identities=9% Similarity=0.054 Sum_probs=34.8
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
..|++.|..||..-+. ..+.|..+||+.+|+++.+|.+.+.+-
T Consensus 33 ~~l~~~~~~iL~~l~~--~~~~t~~ela~~l~~s~~tvs~~l~~L 75 (155)
T 1s3j_A 33 QGVTPAQLFVLASLKK--HGSLKVSEIAERMEVKPSAVTLMADRL 75 (155)
T ss_dssp TTCCHHHHHHHHHHHH--HSEEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4799999998877652 357899999999999999998766543
No 135
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=78.42 E-value=2.7 Score=36.07 Aligned_cols=42 Identities=10% Similarity=0.037 Sum_probs=34.2
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..|+..-+. ..+.|..|||+.+|+++.+|.+.+.+-
T Consensus 39 ~l~~~~~~iL~~l~~--~~~~t~~ela~~l~~~~~tvs~~l~~L 80 (150)
T 2rdp_A 39 PITPPQFVALQWLLE--EGDLTVGELSNKMYLACSTTTDLVDRM 80 (150)
T ss_dssp SSCHHHHHHHHHHHH--HCSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCchhHHHHHHHH
Confidence 689999888876552 357999999999999999998766553
No 136
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=78.36 E-value=2.7 Score=35.65 Aligned_cols=42 Identities=7% Similarity=0.109 Sum_probs=33.4
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|++.|..|+..-+. ..++.|..+||+.+|+++.+|.+.+.+
T Consensus 34 ~l~~~~~~iL~~l~~-~~~~~t~~~la~~l~~s~~~vs~~l~~ 75 (146)
T 2fbh_A 34 GLSQARWLVLLHLAR-HRDSPTQRELAQSVGVEGPTLARLLDG 75 (146)
T ss_dssp CCTTTHHHHHHHHHH-CSSCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCCHHHHHHHhCCChhhHHHHHHH
Confidence 588888888876621 246899999999999999999876654
No 137
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=78.32 E-value=3.4 Score=36.07 Aligned_cols=42 Identities=10% Similarity=0.170 Sum_probs=34.6
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..||..-+. ..+.|..|||+.+|+++++|.+++.+-
T Consensus 47 ~lt~~q~~vL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~L 88 (159)
T 3s2w_A 47 GIGSGQFPFLMRLYR--EDGINQESLSDYLKIDKGTTARAIQKL 88 (159)
T ss_dssp TCCTTTHHHHHHHHH--SCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 589999988876542 467999999999999999998776653
No 138
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=78.21 E-value=2.2 Score=32.06 Aligned_cols=25 Identities=28% Similarity=0.201 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|+|++++|+.+|+|+.+|++++..
T Consensus 25 ~g~s~~~lA~~~gis~~~i~~~e~g 49 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDRSYVGGVERG 49 (74)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 5699999999999999999998864
No 139
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=78.17 E-value=2.5 Score=36.53 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=34.3
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..|+..-+. ..+.|..|||+.+|+++.+|.+++.+-
T Consensus 44 ~l~~~~~~iL~~l~~--~~~~t~~ela~~l~~s~~tvs~~l~~L 85 (153)
T 2pex_A 44 DLTYPQYLVMLVLWE--TDERSVSEIGERLYLDSATLTPLLKRL 85 (153)
T ss_dssp TCCHHHHHHHHHHHH--SCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh--CCCcCHHHHHHHhCCCcccHHHHHHHH
Confidence 688999888876552 367999999999999999998766553
No 140
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=78.03 E-value=2.3 Score=36.61 Aligned_cols=25 Identities=12% Similarity=0.122 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.+.|..+||+.+|+|+++|++.+.+
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~ 45 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQK 45 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 5799999999999999999876554
No 141
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=77.93 E-value=1.7 Score=33.79 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++|++|+|+.+|||+.+|++++..
T Consensus 26 ~gltq~elA~~~gis~~~is~~e~g 50 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKTENA 50 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4699999999999999999999863
No 142
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=77.91 E-value=2.5 Score=36.88 Aligned_cols=42 Identities=7% Similarity=-0.011 Sum_probs=34.4
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..|+..-+. ..+.|..|||+.+|+++.+|.+++.+-
T Consensus 49 ~lt~~~~~iL~~l~~--~~~~t~~ela~~l~is~~tvs~~l~~L 90 (162)
T 3cjn_A 49 GLSTAKMRALAILSA--KDGLPIGTLGIFAVVEQSTLSRALDGL 90 (162)
T ss_dssp TCCHHHHHHHHHHHH--SCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCChhHHHHHHHHH
Confidence 589999998877652 357999999999999999998766543
No 143
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=77.91 E-value=2.6 Score=32.11 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..|+|+.++|+.+|||+++|++++..
T Consensus 18 ~~g~sq~~lA~~~gis~~~i~~~e~g 43 (78)
T 3b7h_A 18 QQNLTINRVATLAGLNQSTVNAMFEG 43 (78)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHCT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35799999999999999999999864
No 144
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=77.89 E-value=6.1 Score=33.63 Aligned_cols=42 Identities=14% Similarity=0.087 Sum_probs=34.4
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..|++.|..||..-+. ..+.|..|||+.+|+++++|.+++.+
T Consensus 27 ~~lt~~q~~iL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~ 68 (145)
T 3g3z_A 27 QDLNYNLFAVLYTLAT--EGSRTQKHIGEKWSLPKQTVSGVCKT 68 (145)
T ss_dssp TTCCHHHHHHHHHHHH--HCSBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 3689999998877542 35799999999999999999876654
No 145
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=77.85 E-value=5.4 Score=32.77 Aligned_cols=38 Identities=16% Similarity=0.148 Sum_probs=29.0
Q ss_pred CHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 447 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 447 p~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
++....|+..-. ..+.|..|||+.+|+|+.+|++.+.+
T Consensus 20 ~~~r~~IL~~L~---~~~~~~~ela~~l~is~~tv~~~l~~ 57 (114)
T 2oqg_A 20 DETRWEILTELG---RADQSASSLATRLPVSRQAIAKHLNA 57 (114)
T ss_dssp CHHHHHHHHHHH---HSCBCHHHHHHHSSSCHHHHHHHHHH
T ss_pred ChHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 455666666543 46799999999999999999876654
No 146
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=77.80 E-value=2.1 Score=34.80 Aligned_cols=26 Identities=12% Similarity=0.305 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..++|+.|+|+.+|||+.+|++++..
T Consensus 35 ~~glTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 35 DRDMKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35799999999999999999999874
No 147
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=77.77 E-value=4 Score=32.70 Aligned_cols=27 Identities=15% Similarity=0.197 Sum_probs=21.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLVAL 489 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~rAL 489 (508)
+..|..+||++||+++..|.+.+++-.
T Consensus 28 ~~~Ta~~IAkkLg~sK~~vNr~LY~L~ 54 (75)
T 1sfu_A 28 DYTTAISLSNRLKINKKKINQQLYKLQ 54 (75)
T ss_dssp CEECHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 337999999999999988877666543
No 148
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=77.68 E-value=2.7 Score=32.97 Aligned_cols=43 Identities=12% Similarity=0.292 Sum_probs=34.3
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHC----CCHHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIG----LSRERVRQVGLVA 488 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~Lg----IS~erVrqi~~rA 488 (508)
..|++.|..|+..-+. .++.|..||++.++ ++..||...+.+-
T Consensus 5 ~~lt~~e~~vL~~L~~--~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL 51 (82)
T 1p6r_A 5 PQISDAELEVMKVIWK--HSSINTNEVIKELSKTSTWSPKTIQTMLLRL 51 (82)
T ss_dssp CCCCHHHHHHHHHHHT--SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc--CCCCCHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 4689999999887652 35799999999997 7999997666553
No 149
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=77.67 E-value=2.3 Score=32.29 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|+|+.++|+.+|||+.+|++++..
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~g 46 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVERG 46 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHCC
Confidence 5699999999999999999999864
No 150
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=77.63 E-value=4.2 Score=35.96 Aligned_cols=42 Identities=2% Similarity=0.017 Sum_probs=34.6
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..||..-+. ..+.|..|||+.+|+++++|.+++.+-
T Consensus 42 ~lt~~~~~iL~~L~~--~~~~t~~eLa~~l~is~~tvs~~l~~L 83 (168)
T 2nyx_A 42 NITIPQFRTLVILSN--HGPINLATLATLLGVQPSATGRMVDRL 83 (168)
T ss_dssp SCCHHHHHHHHHHHH--HCSEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 699999998877652 357999999999999999998766543
No 151
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=77.62 E-value=1.9 Score=31.82 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++|+.++|+.+|+|+.+|++++..
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e~g 41 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWERS 41 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 4689999999999999999999864
No 152
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=77.43 E-value=1.8 Score=33.30 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++|++++|+.+|||+++|++++..
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e~g 38 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIEQS 38 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4699999999999999999999864
No 153
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=77.42 E-value=5.5 Score=33.88 Aligned_cols=41 Identities=7% Similarity=-0.012 Sum_probs=33.4
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..||..-+. ..+ |..+||+.+|+++++|.+.+.+-
T Consensus 34 ~lt~~~~~iL~~l~~--~~~-~~~~la~~l~~~~~tvs~~l~~L 74 (144)
T 3f3x_A 34 NLSYLDFSILKATSE--EPR-SMVYLANRYFVTQSAITAAVDKL 74 (144)
T ss_dssp SCCHHHHHHHHHHHH--SCE-EHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCC-CHHHHHHHHCCChhHHHHHHHHH
Confidence 699999999877652 234 99999999999999998766553
No 154
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=77.29 E-value=2.2 Score=36.08 Aligned_cols=42 Identities=14% Similarity=0.142 Sum_probs=34.2
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..|+..-+. ..+.|..|||+.+|+++++|.+.+.+-
T Consensus 33 ~lt~~~~~iL~~l~~--~~~~t~~ela~~l~~s~~~vs~~l~~L 74 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQ--QGEMESYQLANQACILRPSMTGVLARL 74 (142)
T ss_dssp TCCHHHHHHHHHHHH--HCSEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHhHHHHHHHHH
Confidence 689999988877652 357999999999999999998766543
No 155
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=77.25 E-value=1.6 Score=33.24 Aligned_cols=25 Identities=8% Similarity=-0.077 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++|++++|+.+|||+.+|++++..
T Consensus 20 ~glsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 20 KGKTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999874
No 156
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=77.23 E-value=5.5 Score=34.86 Aligned_cols=42 Identities=7% Similarity=0.036 Sum_probs=34.9
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..||..-+. ..+.|..|||+.+|+++++|.+++.+-
T Consensus 43 glt~~q~~iL~~l~~--~~~~t~~eLa~~l~~~~~tvs~~l~~L 84 (162)
T 3k0l_A 43 EISLPQFTALSVLAA--KPNLSNAKLAERSFIKPQSANKILQDL 84 (162)
T ss_dssp TCCHHHHHHHHHHHH--CTTCCHHHHHHHHTSCGGGHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 699999999877552 368999999999999999998766553
No 157
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=77.12 E-value=2.2 Score=35.76 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..|+|++|+|+.+|||+.+|++++.-
T Consensus 47 ~~glTQ~eLA~~~gvs~~~is~~E~G 72 (101)
T 4ghj_A 47 NRDLTQSEVAEIAGIARKTVLNAEKG 72 (101)
T ss_dssp HTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHcCCCHHHHHHHHCC
Confidence 46799999999999999999999853
No 158
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=77.07 E-value=2.9 Score=32.69 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|+|+.++|+.+|||+.+|++++..
T Consensus 24 ~glsq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5799999999999999999999874
No 159
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=77.06 E-value=6 Score=30.92 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=31.7
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGL 486 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~L-----gIS~erVrqi~~ 486 (508)
.++++...|+.+-..-+..+.|.+||++.+ ++|..||.+.+.
T Consensus 14 ~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~ 60 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLN 60 (83)
T ss_dssp CCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHH
Confidence 588888888876542111469999999999 999999965443
No 160
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=76.84 E-value=2.2 Score=33.88 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..++|++|+|+.+|||+.+|++++.-
T Consensus 25 ~~gltq~elA~~~gis~~~is~~E~G 50 (86)
T 3eus_A 25 DAGLTQADLAERLDKPQSFVAKVETR 50 (86)
T ss_dssp HTTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 35799999999999999999999864
No 161
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=76.68 E-value=2.1 Score=33.77 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..|+|+.++|+.+|||+++|++++.+
T Consensus 20 ~~glT~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 20 KRKLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp TTSCCHHHHHHHHSSCHHHHHHTTTS
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 36799999999999999999998765
No 162
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=76.63 E-value=1.8 Score=35.05 Aligned_cols=42 Identities=14% Similarity=0.061 Sum_probs=32.6
Q ss_pred cCCHHHHHHHhHHhccCCCC---CCHHHHHHHHCCCHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKEC---LTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg---~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|+.++..||...+.. .++ .|..|||+.+|+++++|.+++.+
T Consensus 9 ~l~~~~~~iL~~l~~~-~~~~~~~t~~eLa~~l~i~~~tvs~~l~~ 53 (95)
T 2qvo_A 9 LFKEKALEILMTIYYE-SLGGNDVYIQYIASKVNSPHSYVWLIIKK 53 (95)
T ss_dssp HSCHHHHHHHHHHHHH-HHTTCCEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHc-cCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4888888888665422 124 89999999999999999877654
No 163
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=76.49 E-value=4.3 Score=34.96 Aligned_cols=41 Identities=15% Similarity=0.252 Sum_probs=34.6
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..|+..-. .++.|..|||+.+|+++++|.+++.+-
T Consensus 35 ~lt~~q~~iL~~l~---~~~~t~~eLa~~l~~~~~~vs~~l~~L 75 (151)
T 3kp7_A 35 GISAEQSHVLNMLS---IEALTVGQITEKQGVNKAAVSRRVKKL 75 (151)
T ss_dssp TCCHHHHHHHHHHH---HSCBCHHHHHHHHCSCSSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---cCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 69999999887662 688999999999999999998766553
No 164
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=76.37 E-value=1.9 Score=39.82 Aligned_cols=43 Identities=19% Similarity=0.302 Sum_probs=31.7
Q ss_pred ccCCHHHHHHHhHHhcc-CCCCC--CHHHHHHHHCCC-HHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGL-DKECL--TWEDISKRIGLS-RERVRQVGL 486 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGL-d~eg~--TleEIAe~LgIS-~erVrqi~~ 486 (508)
..|+++|+.++..---+ ...++ |+.|+|+.+|++ +++|++++.
T Consensus 2 ~~lt~~q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~ 48 (202)
T 1jhf_A 2 KALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLK 48 (202)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHH
Confidence 35888888776542211 12367 999999999999 999998865
No 165
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=76.21 E-value=2.6 Score=32.68 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++|++++|+.+|||+.+|++++..
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~e~g 47 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGIERN 47 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 5799999999999999999999864
No 166
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=76.08 E-value=2.8 Score=36.37 Aligned_cols=42 Identities=10% Similarity=-0.064 Sum_probs=33.6
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..||..-+. ..+.|..|||+.+|+++.+|.+.+.+-
T Consensus 41 ~lt~~~~~iL~~l~~--~~~~t~~ela~~l~is~~tvs~~l~~L 82 (154)
T 2eth_A 41 DMKTTELYAFLYVAL--FGPKKMKEIAEFLSTTKSNVTNVVDSL 82 (154)
T ss_dssp HSBHHHHHHHHHHHH--HCCBCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 588888888876541 357999999999999999998766543
No 167
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=76.08 E-value=2.4 Score=36.14 Aligned_cols=42 Identities=12% Similarity=0.029 Sum_probs=33.2
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..|+..-+. ..+.|..+||+.+|+++++|.+.+.+-
T Consensus 26 ~lt~~~~~iL~~l~~--~~~~t~~~la~~l~~s~~~vs~~l~~L 67 (144)
T 1lj9_A 26 SLTRGQYLYLVRVCE--NPGIIQEKIAELIKVDRTTAARAIKRL 67 (144)
T ss_dssp TCTTTHHHHHHHHHH--STTEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CcCcCHHHHHHHHCCCHhHHHHHHHHH
Confidence 588888888766542 357899999999999999998766553
No 168
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=76.04 E-value=1.8 Score=33.42 Aligned_cols=37 Identities=14% Similarity=-0.027 Sum_probs=27.9
Q ss_pred CCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 446 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 446 Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
+++..-.-++.. .++|++|+|+.+|||+.+|++++.-
T Consensus 11 ~~g~~lr~~R~~-----~gltq~elA~~~gvs~~tis~~E~G 47 (73)
T 3fmy_A 11 VAPEFIVKVRKK-----LSLTQKEASEIFGGGVNAFSRYEKG 47 (73)
T ss_dssp CCHHHHHHHHHH-----TTCCHHHHHHHHCSCTTHHHHHHTT
T ss_pred CCHHHHHHHHHH-----cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 444443444443 4699999999999999999999864
No 169
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=75.95 E-value=3.7 Score=32.61 Aligned_cols=26 Identities=15% Similarity=0.160 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..++|++|+|+.+|||+.+|++++..
T Consensus 24 ~~glsq~~lA~~~gis~~~is~~e~g 49 (91)
T 1x57_A 24 SKGLTQKDLATKINEKPQVIADYESG 49 (91)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35799999999999999999999873
No 170
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=75.66 E-value=3 Score=33.46 Aligned_cols=26 Identities=27% Similarity=0.152 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..++|++++|+.+|||+.+|++++..
T Consensus 20 ~~glsq~~lA~~~gis~~~is~~e~G 45 (94)
T 2kpj_A 20 KSEKTQLEIAKSIGVSPQTFNTWCKG 45 (94)
T ss_dssp TSSSCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHhC
Confidence 45799999999999999999999864
No 171
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=75.29 E-value=2.3 Score=32.15 Aligned_cols=25 Identities=16% Similarity=0.125 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++|++++|+.+|+|+.+|++++..
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~e~g 41 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQWERS 41 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999874
No 172
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=75.26 E-value=2.8 Score=32.32 Aligned_cols=25 Identities=16% Similarity=0.349 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|+|+.++|+.+|||+.+|++++..
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~g 46 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIESF 46 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5799999999999999999999873
No 173
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=75.12 E-value=1.8 Score=35.90 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=22.1
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 465 LTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 465 ~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|..+||..+||++.+|+++....
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~ 54 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQH 54 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHH
Confidence 799999999999999999998764
No 174
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=74.42 E-value=3.6 Score=30.70 Aligned_cols=25 Identities=8% Similarity=-0.004 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHC--CCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIG--LSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~Lg--IS~erVrqi~~r 487 (508)
.++|++++|+.+| +|+.+|++++..
T Consensus 20 ~glsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp TTCCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 5799999999999 999999999874
No 175
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=74.27 E-value=2.8 Score=31.69 Aligned_cols=25 Identities=12% Similarity=0.044 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++|+.++|+.+|+|+.+|++++..
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~g 46 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCSN 46 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5699999999999999999999874
No 176
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=74.22 E-value=2.3 Score=34.06 Aligned_cols=24 Identities=29% Similarity=0.169 Sum_probs=20.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGL 486 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~ 486 (508)
.+.|.+|||+.||+|..||+..+.
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~ 46 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLE 46 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHH
Confidence 467999999999999999986654
No 177
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=73.52 E-value=2.9 Score=32.44 Aligned_cols=25 Identities=4% Similarity=0.092 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.| |+.++|+.+|||+.+|++++..-
T Consensus 11 ~g-sq~~lA~~lgvs~~~is~~e~g~ 35 (79)
T 3bd1_A 11 LG-SVSALAASLGVRQSAISNWRARG 35 (79)
T ss_dssp HS-SHHHHHHHHTCCHHHHHHHHHHT
T ss_pred hC-CHHHHHHHHCCCHHHHHHHHHCC
Confidence 46 99999999999999999998753
No 178
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=73.45 E-value=3 Score=33.96 Aligned_cols=25 Identities=24% Similarity=0.122 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++|++++|+.+|||+.+|++++..
T Consensus 42 ~glsq~elA~~lgvs~~~is~~E~G 66 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDWEQG 66 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 5699999999999999999999863
No 179
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=73.41 E-value=2.8 Score=33.83 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=32.8
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHH----HHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDI----SKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEI----Ae~LgIS~erVrqi~~rA 488 (508)
.|++.|..||..-+. ..+.|..|| |+.+|+++.+|.+++.+-
T Consensus 5 ~lt~~q~~iL~~l~~--~~~~~~~el~~~la~~l~is~~tvs~~l~~L 50 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYD--NEGIATYDLYKKVNAEFPMSTATFYDAKKFL 50 (99)
T ss_dssp SSBCHHHHHHHHHTT--CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 477888888876652 357999999 899999999998766543
No 180
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=73.11 E-value=2.9 Score=38.99 Aligned_cols=32 Identities=16% Similarity=0.346 Sum_probs=25.6
Q ss_pred HHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010521 451 REIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 486 (508)
Q Consensus 451 R~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~ 486 (508)
+.|+.++- +|+|..+||+.||+|+.||.+++.
T Consensus 166 ~~i~~~~~----~G~s~~~Ia~~l~is~~tv~r~l~ 197 (209)
T 2r0q_C 166 HRVVEMLE----EGQAISKIAKEVNITRQTVYRIKH 197 (209)
T ss_dssp HHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHh
Confidence 34555543 789999999999999999987654
No 181
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=72.79 E-value=3.8 Score=36.16 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=32.3
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..||..-+..+.++.|..|||+.+|+++.+|.+++.+-
T Consensus 43 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~L 86 (168)
T 3u2r_A 43 ELSAQQYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRL 86 (168)
T ss_dssp TCCHHHHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 69999999887765222358999999999999999998776653
No 182
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=72.73 E-value=5.3 Score=29.42 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHH-----CCCHHHHHHHHH
Q 010521 462 KECLTWEDISKRI-----GLSRERVRQVGL 486 (508)
Q Consensus 462 ~eg~TleEIAe~L-----gIS~erVrqi~~ 486 (508)
....|.+||++.| +||..||++.+.
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 3579999999999 999999987766
No 183
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=72.67 E-value=4.7 Score=34.07 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=28.9
Q ss_pred CHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 447 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 447 p~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
++....||.+-. ..+++..|||+.+|+|+++|++.+..
T Consensus 20 ~~~r~~IL~~L~---~~~~~~~eLa~~lgis~stvs~~L~~ 57 (118)
T 2jsc_A 20 DPTRCRILVALL---DGVCYPGQLAAHLGLTRSNVSNHLSC 57 (118)
T ss_dssp SHHHHHHHHHHH---TTCCSTTTHHHHHSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 455666776544 35689999999999999999876543
No 184
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=72.63 E-value=2.6 Score=35.82 Aligned_cols=43 Identities=9% Similarity=0.112 Sum_probs=34.4
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|++.|..|+..-+.-+..+.|..|||+.+|+++++|.+.+.+
T Consensus 34 ~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~ 76 (127)
T 2frh_A 34 SISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKI 76 (127)
T ss_dssp CCCHHHHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 6999999988776531125799999999999999999876654
No 185
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=72.52 E-value=3.4 Score=33.96 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++|++++|+.+|||+.+|++++..
T Consensus 40 ~gltq~elA~~~gis~~~is~iE~G 64 (99)
T 3g5g_A 40 KGMTQEDLAYKSNLDRTYISGIERN 64 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 5799999999999999999999874
No 186
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=72.40 E-value=3.4 Score=37.59 Aligned_cols=31 Identities=23% Similarity=0.366 Sum_probs=25.0
Q ss_pred HHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010521 452 EIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 486 (508)
Q Consensus 452 ~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~ 486 (508)
.|+.++ .+|+|..+||+.||+|+.||.+++.
T Consensus 150 ~i~~~~----~~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 150 AVLNMW----QQGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp HHHHHH----HTTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHH----HCCCCHHHHHHHHCcCHHHHHHHHh
Confidence 355544 3789999999999999999987764
No 187
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=72.38 E-value=3 Score=32.83 Aligned_cols=22 Identities=18% Similarity=0.087 Sum_probs=20.2
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q 010521 466 TWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 466 TleEIAe~LgIS~erVrqi~~r 487 (508)
+..++|+.||||+.+|++++..
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 6999999999999999999764
No 188
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=72.34 E-value=9.7 Score=32.62 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=33.7
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|++.|..||..-+. ..+++|..|||+.+++++++|.+++.+
T Consensus 36 glt~~q~~vL~~l~~-~~~~~t~~eLa~~l~i~~~tvs~~l~~ 77 (150)
T 3fm5_A 36 GLRVRSYSVLVLACE-QAEGVNQRGVAATMGLDPSQIVGLVDE 77 (150)
T ss_dssp TCCHHHHHHHHHHHH-STTCCCSHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCCcCHHHHHHHHCCCHhHHHHHHHH
Confidence 689999998876531 134689999999999999999877655
No 189
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=72.24 E-value=2.8 Score=33.44 Aligned_cols=39 Identities=13% Similarity=0.109 Sum_probs=29.1
Q ss_pred CHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 447 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 447 p~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
++....||..-.. .++.|..|||+.+|+|+++|.+++.+
T Consensus 15 ~~~~~~iL~~L~~--~~~~~~~ela~~l~is~~tvs~~l~~ 53 (100)
T 1ub9_A 15 NPVRLGIMIFLLP--RRKAPFSQIQKVLDLTPGNLDSHIRV 53 (100)
T ss_dssp SHHHHHHHHHHHH--HSEEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHh--cCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 5666667754331 35799999999999999999866554
No 190
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=72.13 E-value=50 Score=29.95 Aligned_cols=35 Identities=43% Similarity=0.499 Sum_probs=27.2
Q ss_pred hHHHHHHhhCCCCchHHHHHHhccChHHHHHhhhh
Q 010521 227 HKLRLKERLGCEPSMEQLAASLRISRPELQSILME 261 (508)
Q Consensus 227 ~~~~l~~~~g~~p~~~~~a~~~~~s~~~L~~~l~e 261 (508)
....+....|++|+.+++|..+|++.+++...+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 138 (239)
T 1rp3_A 104 VVEKLKEKLGREPTDEEVAKELGISTEELFKTLDK 138 (239)
T ss_dssp HHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 34456667899999999999999998876665544
No 191
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=72.03 E-value=4.6 Score=32.31 Aligned_cols=50 Identities=16% Similarity=0.144 Sum_probs=39.2
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
..++.|..+|.-.|--+ -.....++||+.+|++...|..+......|.|+
T Consensus 9 kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk 60 (76)
T 2ecc_A 9 RKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKH 60 (76)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHH
Confidence 46677777777776432 234578899999999999999999999888775
No 192
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=71.78 E-value=7.4 Score=30.69 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=38.0
Q ss_pred cCCHHHHHHHhHHhccCCCC---------CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKEC---------LTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg---------~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+++.|..+|...| ... ...++||..+|++...|+.+......|.|+
T Consensus 14 ~ft~~Q~~~Le~~F---~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk 69 (80)
T 2da4_A 14 QFSDRDLATLKKYW---DNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRL 69 (80)
T ss_dssp CCCHHHHHHHHHHH---TTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH---HhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhh
Confidence 46777888888877 222 246789999999999999999998888876
No 193
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=71.73 E-value=2.4 Score=34.14 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHCCCHH-HHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRE-RVRQVGLV 487 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~e-rVrqi~~r 487 (508)
..+.|..+||+.||||.. .|++.+..
T Consensus 23 ~g~~ta~eiA~~Lgit~~~aVr~hL~~ 49 (79)
T 1xmk_A 23 VSDSSALNLAKNIGLTKARDINAVLID 49 (79)
T ss_dssp TCCEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cCCcCHHHHHHHcCCCcHHHHHHHHHH
Confidence 357999999999999999 99887654
No 194
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=71.71 E-value=3.5 Score=35.38 Aligned_cols=26 Identities=15% Similarity=0.310 Sum_probs=23.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..++|++|+|+.+|||+.+|+++++.
T Consensus 51 ~~glTQ~eLA~~lGis~~~Is~iE~G 76 (120)
T 2o38_A 51 RARLSQAAAAARLGINQPKVSALRNY 76 (120)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 45799999999999999999999873
No 195
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=71.46 E-value=2.1 Score=36.01 Aligned_cols=42 Identities=5% Similarity=0.048 Sum_probs=33.9
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..|+..-+. ..+.|..|||+.+|+++++|.+.+.+-
T Consensus 30 ~l~~~~~~iL~~l~~--~~~~~~~ela~~l~~~~~tvs~~l~~L 71 (139)
T 3bja_A 30 DISYVQFGVIQVLAK--SGKVSMSKLIENMGCVPSNMTTMIQRM 71 (139)
T ss_dssp TCCHHHHHHHHHHHH--SCSEEHHHHHHHCSSCCTTHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCcCHHHHHHHHCCChhHHHHHHHHH
Confidence 588889888877652 357999999999999999998766553
No 196
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=71.29 E-value=5.8 Score=33.38 Aligned_cols=45 Identities=7% Similarity=0.052 Sum_probs=33.0
Q ss_pred HHHHHHHccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 437 EVNKLIIVTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 437 ~L~~~L~~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.+.++| =+|.-..||.+-. ..++|..|||+.+|+|+.+|++.+..
T Consensus 10 ~~~~al---~~~~R~~Il~~L~---~~~~~~~eLa~~l~is~~tvs~hL~~ 54 (118)
T 3f6o_A 10 GIFQAL---ADPTRRAVLGRLS---RGPATVSELAKPFDMALPSFMKHIHF 54 (118)
T ss_dssp HHHHHH---TSHHHHHHHHHHH---TCCEEHHHHHTTCCSCHHHHHHHHHH
T ss_pred HHHHHh---CCHHHHHHHHHHH---hCCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 344555 2566666776655 46799999999999999999876543
No 197
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=71.06 E-value=2.8 Score=33.17 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++|++++|+.+|||+.+|++++..
T Consensus 29 ~glsq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 29 LGLSQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999874
No 198
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=71.03 E-value=1.8 Score=33.62 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=20.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q 010521 464 CLTWEDISKRIGLSRERVRQVGL 486 (508)
Q Consensus 464 g~TleEIAe~LgIS~erVrqi~~ 486 (508)
..|+.|||+..|||+.||+.+++
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 36999999999999999998875
No 199
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=71.00 E-value=6.9 Score=34.14 Aligned_cols=42 Identities=7% Similarity=-0.071 Sum_probs=34.6
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..||..-+. ..+.|..|||+.+|+++.+|.+++.+-
T Consensus 50 glt~~q~~vL~~l~~--~~~~t~~eLa~~l~~~~~~vs~~l~~L 91 (161)
T 3e6m_A 50 KLPTPKLRLLSSLSA--YGELTVGQLATLGVMEQSTTSRTVDQL 91 (161)
T ss_dssp TCCHHHHHHHHHHHH--HSEEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh--CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 699999998877652 358999999999999999998766553
No 200
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=70.82 E-value=2.9 Score=36.00 Aligned_cols=44 Identities=11% Similarity=0.161 Sum_probs=28.9
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..|+..-+.-+..+.|..|||+.+|+++++|.+++.+-
T Consensus 38 glt~~q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L 81 (148)
T 3jw4_A 38 GLNSQQGRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGL 81 (148)
T ss_dssp TCCHHHHHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHH
Confidence 69999999887765211268999999999999999998766543
No 201
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=70.73 E-value=3.4 Score=35.23 Aligned_cols=43 Identities=2% Similarity=-0.137 Sum_probs=31.6
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.+..||..-+. ...+.|..+||+.+|+++.+|.+.+.+-
T Consensus 32 ~l~~~~~~iL~~l~~-~~~~~~~~~la~~l~i~~~~vs~~l~~L 74 (147)
T 2hr3_A 32 PVQFSQLVVLGAIDR-LGGDVTPSELAAAERMRSSNLAALLREL 74 (147)
T ss_dssp HHHHHHHHHHHHHHH-TTSCBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCCHHHHHHHhCCChhhHHHHHHHH
Confidence 356667777765541 0257999999999999999998766553
No 202
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=70.71 E-value=3.4 Score=35.25 Aligned_cols=43 Identities=12% Similarity=0.086 Sum_probs=33.7
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVAL 489 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rAL 489 (508)
.|++.|..|+..-+. ..+.|..+||+.+|+++.+|.+.+.+-.
T Consensus 37 ~l~~~~~~iL~~l~~--~~~~~~~~la~~l~~~~~tvs~~l~~L~ 79 (147)
T 1z91_A 37 NITYPQYLALLLLWE--HETLTVKKMGEQLYLDSGTLTPMLKRME 79 (147)
T ss_dssp CCCHHHHHHHHHHHH--HSEEEHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCCCHHHHHHHHCCCcCcHHHHHHHHH
Confidence 588888888766542 3578999999999999999987665543
No 203
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=70.50 E-value=4.3 Score=33.88 Aligned_cols=44 Identities=16% Similarity=0.218 Sum_probs=34.7
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHC----CCHHHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIG----LSRERVRQVGLVAL 489 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~Lg----IS~erVrqi~~rAL 489 (508)
..|++.|..|+..-.- ..+.|..|||+.++ +++++|.+++.+-.
T Consensus 6 ~~lt~~~~~vL~~l~~--~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~ 53 (123)
T 1okr_A 6 YEISSAEWEVMNIIWM--KKYASANNIIEEIQMQKDWSPKTIRTLITRLY 53 (123)
T ss_dssp CCCCHHHHHHHHHHHH--HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHh--CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHH
Confidence 4688999888876542 36899999999999 89999987766543
No 204
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=70.47 E-value=4.3 Score=33.88 Aligned_cols=26 Identities=12% Similarity=0.198 Sum_probs=23.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..|+|+.|+|+.+|||+.+|+++++.
T Consensus 25 ~~gltq~eLA~~lGis~~~is~ie~G 50 (104)
T 3trb_A 25 LDKMSANQLAKHLAIPTNRVTAILNG 50 (104)
T ss_dssp TTSCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 45799999999999999999999873
No 205
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=70.20 E-value=2.4 Score=36.04 Aligned_cols=41 Identities=7% Similarity=0.111 Sum_probs=33.4
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|++.|..|+..-+. ..+.|..+||+.+|+++.+|.+.+.+
T Consensus 34 ~l~~~~~~iL~~l~~--~~~~~~~ela~~l~~~~~tvs~~l~~ 74 (142)
T 2bv6_A 34 NLTYPQFLVLTILWD--ESPVNVKKVVTELALDTGTVSPLLKR 74 (142)
T ss_dssp TCCHHHHHHHHHHHH--SSEEEHHHHHHHTTCCTTTHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCcCHHHHHHHHCCChhhHHHHHHH
Confidence 689999988877652 35699999999999999999766554
No 206
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=70.15 E-value=4.9 Score=34.05 Aligned_cols=26 Identities=12% Similarity=0.127 Sum_probs=24.0
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..|+|++|+|+.+|||+.+|++++.-
T Consensus 18 ~~glSq~eLA~~~gis~~~is~iE~G 43 (112)
T 2wus_R 18 ERRITLLDASLFTNINPSKLKRIEEG 43 (112)
T ss_dssp TTTCCHHHHHHHSSCCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 46899999999999999999999975
No 207
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=70.12 E-value=2.6 Score=37.14 Aligned_cols=26 Identities=15% Similarity=0.275 Sum_probs=23.6
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..|+|+.|+|+.+|||+++|++++..
T Consensus 79 ~~glTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 79 KKGFTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp HTTCCHHHHHHHTTCCHHHHHHHHHT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35799999999999999999999874
No 208
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=70.00 E-value=4.4 Score=30.11 Aligned_cols=22 Identities=14% Similarity=0.276 Sum_probs=20.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVG 485 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~ 485 (508)
.+ |+.++|+.+|+|+.+|++++
T Consensus 13 ~g-s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 13 HG-TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp TC-CHHHHHHHHTSCHHHHHHHH
T ss_pred cC-CHHHHHHHHCcCHHHHHHHH
Confidence 46 99999999999999999987
No 209
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=69.98 E-value=2.4 Score=31.82 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=19.9
Q ss_pred CCHHHHHHHHCCCHHHHHHHH
Q 010521 465 LTWEDISKRIGLSRERVRQVG 485 (508)
Q Consensus 465 ~TleEIAe~LgIS~erVrqi~ 485 (508)
.|+.++|+.+|||+.+|++++
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 499999999999999999996
No 210
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=69.68 E-value=3.9 Score=32.67 Aligned_cols=25 Identities=0% Similarity=0.058 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++|..++|+.+|||+.+|++++..
T Consensus 20 ~gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 20 LNVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 4689999999999999999999875
No 211
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=69.65 E-value=4.7 Score=35.77 Aligned_cols=43 Identities=12% Similarity=0.028 Sum_probs=34.2
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..||..-+.. .++.|..|||+.+|+++.+|.+.+.+-
T Consensus 50 glt~~q~~vL~~L~~~-~~~~t~~eLa~~l~i~~~tvs~~l~~L 92 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQL-PPDQSQIQLAKAIGIEQPSLVRTLDQL 92 (166)
T ss_dssp TCCHHHHHHHHHHHHS-CSSEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc-CCCCCHHHHHHHHCCCHhhHHHHHHHH
Confidence 6899998888765411 357999999999999999998766553
No 212
>3sqn_A Conserved domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MGA family; 2.31A {Enterococcus faecalis}
Probab=69.59 E-value=6.9 Score=41.53 Aligned_cols=105 Identities=11% Similarity=0.072 Sum_probs=57.2
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHhCccccccccCCCCCCCCCCCccccccccccCCCCccchHHHHHHHHHHHHHHH
Q 010521 364 GVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGVDDWALKDEVNKLII 443 (508)
Q Consensus 364 Gr~Pt~eEIA~~Lgis~e~v~~~l~~~~~~~SLD~~~~~~~~~~~~~~l~d~i~d~~~e~~Pe~~ve~~el~e~L~~~L~ 443 (508)
+..-+..+||+.+|+|..+++.-+......+.-...+ . ..+ .+-.+.... .... ..+...
T Consensus 30 ~~~it~~eLA~~L~VS~RTIr~dI~~In~~L~~~~~I----~-~~~--~Gy~L~~~~-----~~~~------~~~~~~-- 89 (485)
T 3sqn_A 30 VPQLTAKRLAAQIQTTERTVFSDLQYIRSQLPADWSI----E-TDS--SGIRLRNQG-----NAQT------NELWSL-- 89 (485)
T ss_dssp CCSCBCGGGHHHHTSCHHHHHHHHHHHHTTCCTTEEE----E-EET--TEEEEEEC--------CT------HHHHHH--
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHHHHhcccCcEE----E-EcC--CEEEEecCc-----HHHH------HHHHHh--
Confidence 3446899999999999999998877665443100000 0 000 111121111 0001 011111
Q ss_pred ccCCHHHH--HHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010521 444 VTLGERER--EIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 492 (508)
Q Consensus 444 ~~Lp~rER--~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKL 492 (508)
+.+.+| .|+..-+ ..+..|..++|+.+.||++||.+-+.+..+.|
T Consensus 90 --~~~~eR~~~Il~~LL--~~~~isi~~Lae~l~VS~sTi~~DLk~i~~~L 136 (485)
T 3sqn_A 90 --FLPQSISIQLLKELL--FTKELVTTSFLSTSGVSYETLKRHIKKMNQAL 136 (485)
T ss_dssp --HGGGSHHHHHHHHHH--HCSEEEHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred --cCHHHHHHHHHHHHH--hCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 233333 3333222 13579999999999999999976665554444
No 213
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=69.48 E-value=5.7 Score=34.40 Aligned_cols=43 Identities=9% Similarity=0.049 Sum_probs=34.8
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..||..-++ ...+.|..|||+.+|+++.+|.+++.+-
T Consensus 44 ~l~~~~~~iL~~L~~-~~~~~~~~ela~~l~i~~~tvs~~l~~L 86 (160)
T 3boq_A 44 GLSLAKFDAMAQLAR-NPDGLSMGKLSGALKVTNGNVSGLVNRL 86 (160)
T ss_dssp SCCHHHHHHHHHHHH-CTTCEEHHHHHHHCSSCCSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH-cCCCCCHHHHHHHHCCChhhHHHHHHHH
Confidence 699999999877631 1367999999999999999998766553
No 214
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=69.42 E-value=12 Score=30.73 Aligned_cols=24 Identities=17% Similarity=0.015 Sum_probs=21.1
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHh
Q 010521 367 PSVDRIAEYLNMSQKKVRNATEAI 390 (508)
Q Consensus 367 Pt~eEIA~~Lgis~e~v~~~l~~~ 390 (508)
-+..+||+.+|++..+|...+...
T Consensus 34 ~s~~~ia~~lgis~~Tv~~w~~~~ 57 (128)
T 1pdn_C 34 IRPCVISRQLRVSHGCVSKILNRY 57 (128)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 478899999999999999988765
No 215
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=69.41 E-value=7.8 Score=32.86 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=29.4
Q ss_pred CHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 447 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 447 p~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
++....||.+-.. ..++|..|||+.+|+|+++|++.+..
T Consensus 41 ~~~rl~IL~~L~~--~~~~s~~eLa~~l~is~stvs~~L~~ 79 (122)
T 1u2w_A 41 DENRAKITYALCQ--DEELCVCDIANILGVTIANASHHLRT 79 (122)
T ss_dssp SHHHHHHHHHHHH--SSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 5556667765431 35799999999999999999877654
No 216
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=69.03 E-value=4.7 Score=34.79 Aligned_cols=45 Identities=18% Similarity=0.137 Sum_probs=31.9
Q ss_pred cCCHHHHHHHhHHhcc---CCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGL---DKECLTWEDISKRIGLSRERVRQVGLVAL 489 (508)
Q Consensus 445 ~Lp~rER~VI~LryGL---d~eg~TleEIAe~LgIS~erVrqi~~rAL 489 (508)
.|++.|-.|+..-+.+ +....|..+||+.+|+|..+|.+.+.+-.
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le 76 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLL 76 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4777777665554332 12348999999999999999987766543
No 217
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=68.83 E-value=5.6 Score=38.45 Aligned_cols=42 Identities=10% Similarity=0.124 Sum_probs=34.2
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..|++.+..||..-.. ..+.|..|||+.+|++++||.+++.+
T Consensus 148 ~~L~~~~~~IL~~L~~--~~~~s~~eLA~~lglsksTv~r~L~~ 189 (244)
T 2wte_A 148 RDYSREEMKLLNVLYE--TKGTGITELAKMLDKSEKTLINKIAE 189 (244)
T ss_dssp SCCCHHHHHHHHHHHH--HTCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 5899999999986431 36799999999999999999765543
No 218
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=68.55 E-value=3.8 Score=34.23 Aligned_cols=25 Identities=24% Similarity=0.351 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++|++|+|+.+|||+.+|++++..
T Consensus 33 ~gltq~elA~~~gis~~~is~~E~G 57 (114)
T 3vk0_A 33 KGWSQEELARQCGLDRTYVSAVERK 57 (114)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5699999999999999999999764
No 219
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=68.44 E-value=6.6 Score=31.32 Aligned_cols=28 Identities=25% Similarity=0.234 Sum_probs=25.1
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 010521 364 GVTPSVDRIAEYLNMSQKKVRNATEAIG 391 (508)
Q Consensus 364 Gr~Pt~eEIA~~Lgis~e~v~~~l~~~~ 391 (508)
|..|+..|||+.+|+|...|+.-+....
T Consensus 22 g~~psv~EIa~~lgvS~~TVrr~L~~Le 49 (77)
T 2jt1_A 22 GAPVKTRDIADAAGLSIYQVRLYLEQLH 49 (77)
T ss_dssp TSCEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8899999999999999999998877663
No 220
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=68.18 E-value=4.2 Score=37.47 Aligned_cols=37 Identities=14% Similarity=0.160 Sum_probs=28.3
Q ss_pred CCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 446 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 446 Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++.. +-.+|- ..++|++|+|+.+|||+.++.+++.-
T Consensus 90 ~s~~~--lk~lR~---~~glTQ~elA~~LGvsr~tis~yE~G 126 (170)
T 2auw_A 90 VSHEM--FGDWMH---RNNLSLTTAAEALGISRRMVSYYRTA 126 (170)
T ss_dssp CCHHH--HHHHHH---HTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred CCcHH--HHHHHH---HcCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 44443 444444 46799999999999999999998874
No 221
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=67.83 E-value=4.6 Score=33.43 Aligned_cols=25 Identities=12% Similarity=0.011 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|+|++++|+.+|||+.+|++++..
T Consensus 21 ~glsq~~lA~~~gis~~~i~~~e~g 45 (114)
T 3op9_A 21 HGLKNHQIAELLNVQTRTVAYYMSG 45 (114)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4699999999999999999999874
No 222
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=67.48 E-value=9.1 Score=33.52 Aligned_cols=43 Identities=12% Similarity=0.017 Sum_probs=33.0
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|-.||..-+.. .++.+..|||+.+|+++++|.+++.+-
T Consensus 28 gLt~~q~~vL~~L~~~-~~~~~~~eLa~~l~~~~~tvs~~v~~L 70 (151)
T 4aik_A 28 ELTQTHWVTLYNINRL-PPEQSQIQLAKAIGIEQPSLVRTLDQL 70 (151)
T ss_dssp CCCHHHHHHHHHHHHS-CTTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHc-CCCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 5888888877654311 357899999999999999998776553
No 223
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=67.28 E-value=8.5 Score=28.20 Aligned_cols=50 Identities=6% Similarity=0.022 Sum_probs=37.9
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+++.|..+|...|.-+ -......+||..+|++...|+.+...-..|.|+
T Consensus 3 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 3 SFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 56778888888887432 122357789999999999999999888777765
No 224
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=67.27 E-value=12 Score=33.96 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=30.7
Q ss_pred ccCCHHHHHHHhHH--hcc----CCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLY--YGL----DKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 444 ~~Lp~rER~VI~Lr--yGL----d~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..+++..+.-..+. -++ +.+++|..+||+.||||++|+.++...
T Consensus 22 r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 22 QKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 45666665544321 221 123799999999999999999998773
No 225
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=67.15 E-value=13 Score=37.16 Aligned_cols=43 Identities=14% Similarity=0.198 Sum_probs=37.2
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
+.||+.-+++-.+|.- ..+.|++|+|+.++||.+.|..++.+.
T Consensus 242 ~~Lp~~L~e~a~lRl~--~pdaSL~ELge~l~isKSgVnhRlrKL 284 (295)
T 3hyi_A 242 ENLPEDLRRVALVRLR--NKELSLRELGKKLNLTKSQIYSKLKRI 284 (295)
T ss_dssp GGSCHHHHHHHHHHHH--CTTSCHHHHHHTTTCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHH--CccccHHHHHHHhCcCHHHHHHHHHHH
Confidence 6899999999999872 468999999999999999998776554
No 226
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=67.06 E-value=5.3 Score=33.42 Aligned_cols=25 Identities=12% Similarity=0.129 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++|++++|+.+|||+.+|++++..
T Consensus 35 ~gltq~elA~~~gis~~~is~~E~G 59 (111)
T 3mlf_A 35 YGLTQKELGDLFKVSSRTIQNMEKD 59 (111)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4699999999999999999999874
No 227
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=66.84 E-value=13 Score=32.09 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=21.7
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 463 ECL-TWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 463 eg~-TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
+.+ |..++|+.||||+.+|| +|++.|.
T Consensus 36 ~~LPser~La~~~gVSr~tVR----eAl~~L~ 63 (134)
T 4ham_A 36 EKILSIREFASRIGVNPNTVS----KAYQELE 63 (134)
T ss_dssp CEECCHHHHHHHHTCCHHHHH----HHHHHHH
T ss_pred CCCccHHHHHHHHCCCHHHHH----HHHHHHH
Confidence 345 89999999999999997 5666554
No 228
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=66.45 E-value=5.4 Score=32.49 Aligned_cols=25 Identities=4% Similarity=0.271 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|+|+.++|+.+|||+.+|++++..
T Consensus 13 ~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 13 KGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999875
No 229
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=66.22 E-value=4.7 Score=32.28 Aligned_cols=25 Identities=12% Similarity=0.133 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++|+.++|+.+|||+.+|++++..
T Consensus 16 ~gltq~~lA~~~gis~~~is~~e~g 40 (99)
T 2l49_A 16 EYLSRQQLADLTGVPYGTLSYYESG 40 (99)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4699999999999999999998864
No 230
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=65.83 E-value=4.8 Score=31.08 Aligned_cols=22 Identities=23% Similarity=0.261 Sum_probs=20.3
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q 010521 465 LTWEDISKRIGLSRERVRQVGL 486 (508)
Q Consensus 465 ~TleEIAe~LgIS~erVrqi~~ 486 (508)
.|+.++|+.||||+.+|++++.
T Consensus 14 ~sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 14 KNQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp SCHHHHHHHSSSCHHHHHHHHH
T ss_pred cCHHHHHHHhCCCHHHHHHHHH
Confidence 4999999999999999999874
No 231
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=65.77 E-value=5.8 Score=33.04 Aligned_cols=28 Identities=36% Similarity=0.557 Sum_probs=22.2
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 463 ECL-TWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 463 eg~-TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
+.+ |..|||+.||||+.+|+. |+++|..
T Consensus 41 ~~lps~~eLa~~lgVSr~tVr~----al~~L~~ 69 (102)
T 2b0l_A 41 EGLLVASKIADRVGITRSVIVN----ALRKLES 69 (102)
T ss_dssp EEEECHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CcCCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 335 999999999999999974 6666553
No 232
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=65.66 E-value=16 Score=27.77 Aligned_cols=52 Identities=15% Similarity=0.138 Sum_probs=40.7
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 496 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L 496 (508)
.+++.|..+|...|-.+ -......+||..+|++...|..+...-..|.|+.-
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~ 62 (68)
T 1yz8_P 9 HFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 62 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHh
Confidence 46777888888887442 13456789999999999999999998888877643
No 233
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=65.64 E-value=8.7 Score=33.13 Aligned_cols=44 Identities=20% Similarity=0.233 Sum_probs=35.2
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHC----CCHHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIG----LSRERVRQVGLVA 488 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~Lg----IS~erVrqi~~rA 488 (508)
..|++.|..|+..-+.. .++.|..||++.++ ++..||...+.+-
T Consensus 5 ~~lt~~e~~vL~~L~~~-~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rL 52 (138)
T 2g9w_A 5 TRLGDLERAVMDHLWSR-TEPQTVRQVHEALSARRDLAYTTVMAVLQRL 52 (138)
T ss_dssp GGCCHHHHHHHHHHHTC-SSCEEHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhc-CCCCCHHHHHHHHhccCCCCHHHHHHHHHHH
Confidence 57999999998876521 25799999999998 8999998776654
No 234
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=65.61 E-value=4.4 Score=35.01 Aligned_cols=39 Identities=13% Similarity=0.118 Sum_probs=28.3
Q ss_pred HHHHHHHhHHhccCCCCCCHHHHHHHHC-----CCHHHHHHHHH
Q 010521 448 EREREIIRLYYGLDKECLTWEDISKRIG-----LSRERVRQVGL 486 (508)
Q Consensus 448 ~rER~VI~LryGLd~eg~TleEIAe~Lg-----IS~erVrqi~~ 486 (508)
+|=...+...+.-+..++|++|+|+.+| +|+++++++++
T Consensus 8 ~RL~~L~~~~~~~~~~~lT~~elA~~~~~~G~~iS~s~is~iE~ 51 (123)
T 3qwg_A 8 ARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRS 51 (123)
T ss_dssp HHHHHHHHHSSCTTTCSCCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCCCCHHHHHHHHcccCCCcCHHHHHHHHc
Confidence 3333444444433345799999999998 99999999986
No 235
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=65.58 E-value=5.6 Score=36.33 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 464 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 464 g~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+|.++||..+|+|+++|+ |++++|++
T Consensus 163 ~~t~~~lA~~lG~sr~tvs----R~l~~L~~ 189 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTS----TALNSLIK 189 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 4899999999999999996 55555553
No 236
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=65.51 E-value=9.4 Score=33.35 Aligned_cols=40 Identities=13% Similarity=0.047 Sum_probs=31.9
Q ss_pred CHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010521 447 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEK 491 (508)
Q Consensus 447 p~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkK 491 (508)
..|.+.|... | .|.+..|+|+++|+|..+|++|+.+..+.
T Consensus 80 ~~Rn~~I~~~-f----~G~n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 80 LIRDLRIWND-F----NGRNVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp HHHHHHHHHH-C----CSSCHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHH-h----CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3556667665 4 48999999999999999999998776553
No 237
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=65.41 E-value=5.5 Score=35.70 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 464 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 464 g~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+|.++||..+|+|+++|+ |++++|++
T Consensus 167 ~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 193 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVG----RILKMLED 193 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred ccCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 5799999999999999996 55566654
No 238
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=65.13 E-value=6.9 Score=33.01 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|+|++++|+.+|||+++|++++..
T Consensus 24 ~glsq~~lA~~~gis~~~is~~E~g 48 (126)
T 3ivp_A 24 QGLTREQVGAMIEIDPRYLTNIENK 48 (126)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 5799999999999999999999864
No 239
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=65.11 E-value=10 Score=33.12 Aligned_cols=44 Identities=18% Similarity=0.163 Sum_probs=31.7
Q ss_pred cCCHHHHHHHhHHhccC---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD---KECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd---~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|-.|+..-+..+ ..++|..|||+.+++++.+|.+++.+-
T Consensus 30 gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~L 76 (148)
T 4fx0_A 30 GLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVM 76 (148)
T ss_dssp TCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 58999988887654221 235899999999999999998776653
No 240
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=64.98 E-value=24 Score=32.05 Aligned_cols=47 Identities=15% Similarity=0.172 Sum_probs=32.3
Q ss_pred ccCCHHHHHHHhH-----Hhcc-----C-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 444 VTLGEREREIIRL-----YYGL-----D-KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 444 ~~Lp~rER~VI~L-----ryGL-----d-~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
...+..+|..-.+ .+|- . .-.+|.++||..+|+|+++|. |++++|++
T Consensus 149 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 206 (232)
T 2gau_A 149 TQKHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLSNMTVSNAI----RTLSTFVS 206 (232)
T ss_dssp HHSCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHTTSCHHHHH----HHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 3577777765444 4432 1 136899999999999999996 55555553
No 241
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=64.93 E-value=14 Score=28.10 Aligned_cols=50 Identities=12% Similarity=0.290 Sum_probs=38.0
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+++.|..+|...|-.+ -......+||..+|++...|..+...-..|.|+
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk 64 (70)
T 2da1_A 13 RITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQ 64 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhh
Confidence 45666777777766332 234568899999999999999999888877764
No 242
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=64.89 E-value=5.7 Score=35.55 Aligned_cols=27 Identities=33% Similarity=0.475 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 464 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 464 g~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+|+++||..+|+|+++|+ |++++|++
T Consensus 164 ~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 190 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVG----RVLKSLEE 190 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 4899999999999999996 55555553
No 243
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=64.87 E-value=7.3 Score=35.65 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=28.1
Q ss_pred CHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010521 447 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 486 (508)
Q Consensus 447 p~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~ 486 (508)
.+|.+.|+.+-.. +..+.|..|||+.+|||+.||++.+.
T Consensus 20 ~~R~~~Il~~L~~-~~~~~s~~eLa~~l~vS~~Ti~rdi~ 58 (187)
T 1j5y_A 20 QERLKSIVRILER-SKEPVSGAQLAEELSVSRQVIVQDIA 58 (187)
T ss_dssp HHHHHHHHHHHHH-CSSCBCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-cCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 3556666655320 12458999999999999999987765
No 244
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=64.73 E-value=4.4 Score=33.04 Aligned_cols=25 Identities=12% Similarity=0.149 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++|+.++|+.+|||+.+|+++++.
T Consensus 30 ~gltq~~lA~~~gis~~~is~~e~g 54 (104)
T 3cec_A 30 LDINTANFAEILGVSNQTIQEVING 54 (104)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4689999999999999999999864
No 245
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=64.70 E-value=6.1 Score=35.72 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 464 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 464 g~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+|.++||..+|+|+++|+ |++++|++
T Consensus 169 ~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 195 (220)
T 3dv8_A 169 KITHETIANHLGSHREVIT----RMLRYFQV 195 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 6899999999999999996 55555554
No 246
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=64.59 E-value=5.7 Score=33.89 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=31.1
Q ss_pred CCHHHHHHHhHHhccCCCCCCHHHHHHHH--CCCHHHHHHHHHH
Q 010521 446 LGEREREIIRLYYGLDKECLTWEDISKRI--GLSRERVRQVGLV 487 (508)
Q Consensus 446 Lp~rER~VI~LryGLd~eg~TleEIAe~L--gIS~erVrqi~~r 487 (508)
+++..+.||.+-- ....+|..+||+.+ |+|+.+|++++.+
T Consensus 11 md~~d~~IL~~L~--~~g~~s~~eLA~~l~~giS~~aVs~rL~~ 52 (111)
T 3b73_A 11 MTIWDDRILEIIH--EEGNGSPKELEDRDEIRISKSSVSRRLKK 52 (111)
T ss_dssp CCHHHHHHHHHHH--HHSCBCHHHHHTSTTCCSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHH--HcCCCCHHHHHHHHhcCCCHHHHHHHHHH
Confidence 6777777776642 02479999999999 9999999887654
No 247
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=64.55 E-value=6 Score=36.19 Aligned_cols=27 Identities=37% Similarity=0.387 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 464 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 464 g~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+|.++||..+|+|+++|+ |++++|++
T Consensus 175 ~~t~~~iA~~lg~sr~tvs----R~l~~L~~ 201 (231)
T 3e97_A 175 PLGTQDIMARTSSSRETVS----RVLKRLEA 201 (231)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 5899999999999999996 55556554
No 248
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=64.42 E-value=6.8 Score=36.36 Aligned_cols=42 Identities=14% Similarity=0.069 Sum_probs=34.2
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..||..-+. ..+.|..|||+.+|+++.+|.+++.+-
T Consensus 45 gLt~~q~~iL~~L~~--~~~~t~~eLa~~l~i~~stvs~~l~~L 86 (207)
T 2fxa_A 45 DLNINEHHILWIAYQ--LNGASISEIAKFGVMHVSTAFNFSKKL 86 (207)
T ss_dssp TCCHHHHHHHHHHHH--HTSEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 689999988876542 357999999999999999998766543
No 249
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=63.97 E-value=85 Score=28.41 Aligned_cols=179 Identities=13% Similarity=0.070 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccCCCCCCcchhHHHHHHHHHHHHHHHHhcccccccccHHHH
Q 010521 270 VMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHER 349 (508)
Q Consensus 270 Ie~yl~LV~sIAkrY~~~g~d~EDLiQEG~IgLirAiekFDperG~rFsTYA~~wIR~~I~~~Ird~~R~irip~~~~~~ 349 (508)
+..-..++..++.++ ++. +-+.+.-.-+++-+...+.-+|.+....+...+.- +++
T Consensus 9 l~~a~~~I~~~~~~L---~L~--~~v~~~A~~l~~~~~~~~~~~gr~~~~vaaAclyl----Acr--------------- 64 (200)
T 1ais_B 9 LAFALSELDRITAQL---KLP--RHVEEEAARLYREAVRKGLIRGRSIESVMAACVYA----ACR--------------- 64 (200)
T ss_dssp HHHHHHHHHHHHHHH---TCC--HHHHHHHHHHHHHHHTTTTTTTCCHHHHHHHHHHH----HHH---------------
T ss_pred HHHHHHHHHHHHHHc---CCC--HHHHHHHHHHHHHHHhCCCcCCCCHHHHHHHHHHH----HHH---------------
Confidence 334455566666665 233 45556666666666555555665544433322222 211
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHhCccccccccCCCCCCCCCCCccccccccccCCCCccchH
Q 010521 350 LGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREAFPSLNGLPGETHHSYIADNRVENNPWHGV 429 (508)
Q Consensus 350 l~kir~a~~~l~~~Gr~Pt~eEIA~~Lgis~e~v~~~l~~~~~~~SLD~~~~~~~~~~~~~~l~d~i~d~~~e~~Pe~~v 429 (508)
..|...+..||+...+++..++........+.+.++-+.. ..+....+..+...-. -+. .+
T Consensus 65 ------------~~~~p~~l~di~~~~~v~~~~i~~~~~~l~~~L~~~~~~~---~~~p~~~i~r~~~~L~---l~~-~v 125 (200)
T 1ais_B 65 ------------LLKVPRTLDEIADIARVDKKEIGRSYRFIARNLNLTPKKL---FVKPTDYVNKFADELG---LSE-KV 125 (200)
T ss_dssp ------------HHTCCCCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCTTTT---CCCGGGGHHHHHHHHT---CCH-HH
T ss_pred ------------HcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHhcccCCcC---CCCHHHHHHHHHHHcC---CCH-HH
Confidence 1345667899999999999998887776654443332210 0001111111111111 111 11
Q ss_pred HHHHHHHHHHHHHHcc----CCHHH--HHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010521 430 DDWALKDEVNKLIIVT----LGERE--REIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKL 492 (508)
Q Consensus 430 e~~el~e~L~~~L~~~----Lp~rE--R~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKL 492 (508)
...-...++.+.... -+|.- ..+|.+-.-+.+.+.|.+||++..|++..+|++....-.+.|
T Consensus 126 -~~~A~~i~~~~~~~~~~~gr~P~~iAaAaly~A~~~~~~~~t~~ei~~~~~vs~~ti~~~~~~l~~~l 193 (200)
T 1ais_B 126 -RRRAIEILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELVEKL 193 (200)
T ss_dssp -HHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHc
Confidence 122223333333211 22332 122322222224678999999999999999987766554443
No 250
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=63.96 E-value=6.1 Score=35.47 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 464 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 464 g~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+|+++||..+|+|+++|. |++++|++
T Consensus 146 ~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 172 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVT----KVIGELAR 172 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 4899999999999999996 55555553
No 251
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=63.94 E-value=6.1 Score=29.67 Aligned_cols=22 Identities=14% Similarity=0.229 Sum_probs=18.2
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q 010521 465 LTWEDISKRIGLSRERVRQVGL 486 (508)
Q Consensus 465 ~TleEIAe~LgIS~erVrqi~~ 486 (508)
-+..+.|+.||||+.|+...+.
T Consensus 34 gn~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 34 PSTRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp CSHHHHHHHTTSCTHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 3788999999999999975543
No 252
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=63.79 E-value=1.4 Score=44.47 Aligned_cols=44 Identities=16% Similarity=0.212 Sum_probs=0.0
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALE 490 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALk 490 (508)
.+.+++..|+..-|. .++.|..|||+.||+|+.||++.+.+..+
T Consensus 17 ~~~~r~~~iL~~l~~--~~~~t~~eLa~~l~vs~~Tv~r~l~~Le~ 60 (345)
T 2o0m_A 17 DVLQERFQILRNIYW--MQPIGRRSLSETMGITERVLRTETDVLKQ 60 (345)
T ss_dssp ----------------------------------------------
T ss_pred HhhHHHHHHHHHHHH--cCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 366677777766441 46899999999999999999988776543
No 253
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=63.79 E-value=6.3 Score=32.52 Aligned_cols=26 Identities=12% Similarity=0.075 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..|+|+.++|+.+|||+.+|++++..
T Consensus 22 ~~glsq~~lA~~~gis~~~is~~e~g 47 (113)
T 2eby_A 22 PLDLKINELAELLHVHRNSVSALINN 47 (113)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 46799999999999999999999864
No 254
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=63.62 E-value=20 Score=30.84 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=21.2
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHh
Q 010521 367 PSVDRIAEYLNMSQKKVRNATEAI 390 (508)
Q Consensus 367 Pt~eEIA~~Lgis~e~v~~~l~~~ 390 (508)
-+..+||+.+|++..+|...+...
T Consensus 49 ~s~~~iA~~lgis~~TV~rw~~~~ 72 (149)
T 1k78_A 49 VRPCDISRQLRVSHGCVSKILGRY 72 (149)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 478999999999999999988765
No 255
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=63.43 E-value=4 Score=38.62 Aligned_cols=43 Identities=26% Similarity=0.265 Sum_probs=32.0
Q ss_pred cCCHHHHHHHhHHhccCCCCCCH--HHHHHHHCCCHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTW--EDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~Tl--eEIAe~LgIS~erVrqi~~r 487 (508)
.|++.+..++..-|-|..++.|. .+||+.+|+++.+|++.+.+
T Consensus 3 ~lt~~~e~~L~~L~~l~~~~~~~~~~~La~~l~vs~~tvs~~l~~ 47 (230)
T 1fx7_A 3 ELVDTTEMYLRTIYDLEEEGVTPLRARIAERLDQSGPTVSQTVSR 47 (230)
T ss_dssp TTSSHHHHHHHHHHHHHHHTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 57777777776655442246666 99999999999999876654
No 256
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=63.25 E-value=6.5 Score=35.86 Aligned_cols=27 Identities=44% Similarity=0.576 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 464 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 464 g~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+|.++||..+|+|+++|. |++++|++
T Consensus 177 ~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 203 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVN----KALADFAH 203 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 5899999999999999996 55555553
No 257
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=62.99 E-value=6.4 Score=35.78 Aligned_cols=28 Identities=32% Similarity=0.432 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
-.+|+++||..+|+|+++|+ |++++|++
T Consensus 166 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 193 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVS----VLLNDFKK 193 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred ccCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 36899999999999999996 55555553
No 258
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=62.89 E-value=17 Score=28.51 Aligned_cols=54 Identities=11% Similarity=0.182 Sum_probs=40.7
Q ss_pred cCCHHHHHHHhHHhccCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDK--ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 498 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~--eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~~ 498 (508)
.+++.|..+|...|-.+. ......+||..+|++...|..+...-..|.|+.-..
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 13 SFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 467778888888873321 123477899999999999999998888888876543
No 259
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=62.78 E-value=6.5 Score=35.41 Aligned_cols=28 Identities=25% Similarity=0.287 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
-.+|.++||..+|+|+++|+ |++++|++
T Consensus 162 ~~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 189 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVS----RVLHALAE 189 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 35899999999999999996 55556554
No 260
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=62.60 E-value=7.5 Score=32.49 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=34.4
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHC----CCHHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIG----LSRERVRQVGLVA 488 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~Lg----IS~erVrqi~~rA 488 (508)
..|++.|..|+..-+- .++.|..|||+.++ ++.+||..++.+-
T Consensus 6 ~~Lt~~q~~vL~~L~~--~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rL 52 (126)
T 1sd4_A 6 VEISMAEWDVMNIIWD--KKSVSANEIVVEIQKYKEVSDKTIRTLITRL 52 (126)
T ss_dssp CCCCHHHHHHHHHHHH--SSSEEHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh--cCCCCHHHHHHHHhhcCCCChhhHHHHHHHH
Confidence 3689999988877652 35799999999997 5899998777664
No 261
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=62.51 E-value=4.4 Score=31.16 Aligned_cols=52 Identities=12% Similarity=0.104 Sum_probs=39.2
Q ss_pred cCCHHHHHHHhHHhccC-CCC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD-KEC----LTWEDISKRIGLSRERVRQVGLVALEKLKHAA 496 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd-~eg----~TleEIAe~LgIS~erVrqi~~rALkKLR~~L 496 (508)
.+|+.+..+|.-.|--+ ..+ ..-.+||..+|++...|+.+......|+++.+
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~ 60 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPM 60 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHH
Confidence 57888888888877311 112 34789999999999999999999999988654
No 262
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=62.43 E-value=8.7 Score=33.73 Aligned_cols=46 Identities=13% Similarity=-0.020 Sum_probs=36.2
Q ss_pred cCCHHHHHHHhHHhccC---CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD---KECLTWEDISKRIGLSRERVRQVGLVALE 490 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd---~eg~TleEIAe~LgIS~erVrqi~~rALk 490 (508)
.|++.|-.||..-+.+. ..+.|.++||+.+|++..+|.+.+.+-++
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~ 77 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQ 77 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 68999988877766441 24589999999999999999877766544
No 263
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=62.24 E-value=8.2 Score=30.79 Aligned_cols=25 Identities=8% Similarity=0.048 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
...+..|||+.||||..|||.-+..
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~ 39 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQ 39 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 4689999999999999999877654
No 264
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=62.22 E-value=20 Score=27.30 Aligned_cols=51 Identities=10% Similarity=0.027 Sum_probs=39.6
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 495 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~ 495 (508)
.+++.|..+|...|..+ -......+||..+|++...|..+...-..|.|+.
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 60 (68)
T 1ahd_P 8 TYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 60 (68)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHh
Confidence 45777777787777432 2345688999999999999999998888887764
No 265
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=62.09 E-value=11 Score=29.31 Aligned_cols=49 Identities=6% Similarity=0.008 Sum_probs=37.6
Q ss_pred CHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010521 447 GEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 495 (508)
Q Consensus 447 p~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~ 495 (508)
+..|..+|.-.|.-+ ..+....+||..+|+|+..|+.+...-..|+|+-
T Consensus 12 ~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 12 TKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 455666666666432 2345688999999999999999999998888864
No 266
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=62.07 E-value=10 Score=27.73 Aligned_cols=50 Identities=10% Similarity=0.030 Sum_probs=37.3
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+++.|..+|...|.-+ -......+||..+|++...|..+...-..|.|+
T Consensus 6 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 6 PFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 45677777887777432 112347789999999999999999888777664
No 267
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=62.06 E-value=9.1 Score=35.33 Aligned_cols=42 Identities=26% Similarity=0.075 Sum_probs=32.7
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..|+|-|+.....++ + ..|+|.++||+.+|+|+.+|++++.-
T Consensus 34 edL~piE~A~a~~~L-~-~~G~t~eeiA~~lG~s~s~V~~~LrL 75 (178)
T 1r71_A 34 NELTPREIADFIGRE-L-AKGKKKGDIAKEIGKSPAFITQHVTL 75 (178)
T ss_dssp TCCCHHHHHHHHHHH-H-HTTCCHHHHHHHHTCCHHHHHHHHGG
T ss_pred CCCCHHHHHHHHHHH-H-HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 578888877654443 1 25899999999999999999987653
No 268
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=62.06 E-value=7 Score=33.74 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
..|+|++|+|+.+|+|+.+++++++--
T Consensus 14 ~~gltq~elA~~~gis~~~is~iE~g~ 40 (130)
T 3fym_A 14 RLGMTLTELEQRTGIKREMLVHIENNE 40 (130)
T ss_dssp HTTCCHHHHHHHHCCCHHHHHHHHTTC
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCCC
Confidence 468999999999999999999998753
No 269
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=62.02 E-value=11 Score=27.89 Aligned_cols=50 Identities=6% Similarity=-0.039 Sum_probs=37.4
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+++.|..+|...|.-+ -......+||..+|++...|..+...-..+.|+
T Consensus 7 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 7 AFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 45777777887777432 122357799999999999999999888777664
No 270
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=61.99 E-value=6.1 Score=31.84 Aligned_cols=25 Identities=12% Similarity=0.130 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHCCCHHH----HHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRER----VRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~er----Vrqi~~r 487 (508)
.|+|++++|+.+|||+.+ |++++..
T Consensus 13 ~glsq~~lA~~~gis~~~~~~~is~~E~g 41 (98)
T 3lfp_A 13 AGISQEKLGVLAGIDEASASARMNQYEKG 41 (98)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCcchhhhHHHHHHCC
Confidence 469999999999999999 8888765
No 271
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=61.97 E-value=10 Score=29.75 Aligned_cols=53 Identities=9% Similarity=0.266 Sum_probs=39.5
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 497 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~ 497 (508)
.+++.|..+|...|-.+ -......+||..+|++...|..+...-..|.|+...
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 13 SFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 45666777777666322 122357789999999999999999999888887653
No 272
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=61.82 E-value=7.1 Score=36.36 Aligned_cols=27 Identities=30% Similarity=0.401 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 464 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 464 g~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+|.++||..+|+|+++|. |++++|++
T Consensus 193 ~lt~~~lA~~lG~sr~tvs----R~l~~L~~ 219 (243)
T 3la7_A 193 KLSHQAIAEAIGSTRVTVT----RLLGDLRE 219 (243)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHHCCcHHHHH----HHHHHHHH
Confidence 5899999999999999996 55556654
No 273
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=61.76 E-value=7 Score=35.58 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 464 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 464 g~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
++|.++||..+|+|+++|+ |++++|++
T Consensus 187 ~lt~~~lA~~lg~sr~tvs----R~l~~L~~ 213 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAG----RVLKKLQA 213 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 3799999999999999996 55556653
No 274
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=61.58 E-value=7.2 Score=36.35 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=22.2
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 464 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 464 g~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+|.++||..+|+|+++|. |++++|++
T Consensus 177 ~~t~~~iA~~lG~sr~tvs----R~l~~L~~ 203 (250)
T 3e6c_C 177 PLSQKSIGEITGVHHVTVS----RVLASLKR 203 (250)
T ss_dssp CCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHH----HHHHHHHH
Confidence 5899999999999999996 45555554
No 275
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=61.54 E-value=1.7 Score=40.01 Aligned_cols=34 Identities=6% Similarity=0.040 Sum_probs=0.0
Q ss_pred HHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 451 REIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 451 R~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
+.|+.++ .+|+|..+||+.||||+.||.+++...
T Consensus 149 ~~i~~l~----~~G~s~~~Ia~~l~vs~~Tvyr~l~~~ 182 (193)
T 3uj3_X 149 EQAGRLL----AQGIPRKQVALIYDVALSTLYKKHPAK 182 (193)
T ss_dssp --------------------------------------
T ss_pred HHHHHHH----HcCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 4455554 378999999999999999998777554
No 276
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=61.36 E-value=5.5 Score=33.10 Aligned_cols=25 Identities=8% Similarity=0.094 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|+|+.++|+.+|||+.+|++++..
T Consensus 40 ~glsq~~lA~~~gis~~~is~~E~g 64 (117)
T 3f52_A 40 KGVTLRELAEASRVSPGYLSELERG 64 (117)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 4689999999999999999999864
No 277
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=61.31 E-value=7.4 Score=34.66 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=30.3
Q ss_pred CCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 446 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 446 Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
-+|.-..||.+-. ..++|..|||+.+|+|+.+|++.+..
T Consensus 56 ~~p~R~~IL~~L~---~~~~t~~eLa~~lgls~stvs~hL~~ 94 (151)
T 3f6v_A 56 AEPTRRRLVQLLT---SGEQTVNNLAAHFPASRSAISQHLRV 94 (151)
T ss_dssp TSHHHHHHHHHGG---GCCEEHHHHHTTSSSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3566666776654 46799999999999999999876654
No 278
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=61.04 E-value=6.1 Score=35.35 Aligned_cols=27 Identities=26% Similarity=0.382 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 464 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 464 g~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+|.++||..+|+|+++|. |++++|++
T Consensus 139 ~~t~~~lA~~lg~sr~tvs----R~l~~L~~ 165 (195)
T 3b02_A 139 TVSHEEIADATASIRESVS----KVLADLRR 165 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 4899999999999999996 55556653
No 279
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=60.88 E-value=12 Score=29.80 Aligned_cols=56 Identities=16% Similarity=0.162 Sum_probs=42.3
Q ss_pred cCCHHHHHHHhHHh---ccC-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhh
Q 010521 445 TLGEREREIIRLYY---GLD-K-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKKK 500 (508)
Q Consensus 445 ~Lp~rER~VI~Lry---GLd-~-eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~~~~ 500 (508)
.+++.+..+|...| -.+ + ......+||..+|++...|..+......|.|+......
T Consensus 7 ~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~~ 67 (87)
T 1b72_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67 (87)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGGH
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccccc
Confidence 46788888888777 211 1 12346789999999999999999999999988665443
No 280
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=60.60 E-value=14 Score=29.48 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=38.9
Q ss_pred cCCHHHHHHHhHHhccC-----CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD-----KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 497 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd-----~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~ 497 (508)
.+++.+..+|.-.|.-+ -....-++||..+|++...|..+...+..|.++.+.
T Consensus 13 ~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 13 NLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp SCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 46667777776554210 112357889999999999999999999999887653
No 281
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=60.59 E-value=7.3 Score=32.20 Aligned_cols=41 Identities=7% Similarity=0.092 Sum_probs=29.3
Q ss_pred ccCCHHHHH-HHhHHhccCCCCCCHHHHHHHH-CCCHHHHHHHHHH
Q 010521 444 VTLGERERE-IIRLYYGLDKECLTWEDISKRI-GLSRERVRQVGLV 487 (508)
Q Consensus 444 ~~Lp~rER~-VI~LryGLd~eg~TleEIAe~L-gIS~erVrqi~~r 487 (508)
+.|+++-+. ||..-. ..++++.||++.+ |+|..+|.+.+.+
T Consensus 9 ~~l~~~~~~~IL~~L~---~~~~~~~eLa~~l~~is~~tls~~L~~ 51 (107)
T 2hzt_A 9 EVIGGKWKXVILXHLT---HGKKRTSELKRLMPNITQKMLTQQLRE 51 (107)
T ss_dssp HHHCSTTHHHHHHHHT---TCCBCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred HHHcCccHHHHHHHHH---hCCCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 455666553 443333 4679999999999 9999999876554
No 282
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=60.45 E-value=13 Score=28.96 Aligned_cols=55 Identities=15% Similarity=0.050 Sum_probs=39.9
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHh
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKK 499 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~~~ 499 (508)
.+++.|..+|...|..+ -......+||..+|++...|..+...-..|.|+.....
T Consensus 15 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 15 LFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 35666777777666322 11234678999999999999999999888888765443
No 283
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=60.45 E-value=6.4 Score=35.75 Aligned_cols=27 Identities=7% Similarity=0.153 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 464 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 464 g~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
..|.++||..+|+|+++|+ |++++|++
T Consensus 178 ~~t~~~lA~~lg~sr~tvs----R~l~~l~~ 204 (227)
T 3dkw_A 178 PVAKQLVAGHLSIQPETFS----RIMHRLGD 204 (227)
T ss_dssp CSCTHHHHHHTTSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 5799999999999999996 55556654
No 284
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=60.35 E-value=12 Score=28.63 Aligned_cols=51 Identities=14% Similarity=0.173 Sum_probs=37.4
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 495 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~ 495 (508)
.+++.|..+|...|-.+ -......+||..+|++...|..+...-..|.|+.
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2dmu_A 13 IFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRS 65 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehcccccccccccc
Confidence 35666777777766322 1223577899999999999999999888887753
No 285
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=60.22 E-value=7 Score=29.68 Aligned_cols=24 Identities=8% Similarity=0.011 Sum_probs=21.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 465 LTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 465 ~TleEIAe~LgIS~erVrqi~~rA 488 (508)
++..|+|+.+|||+.||.+...+.
T Consensus 11 l~~~eva~~lgvsrstiy~~~~~g 34 (66)
T 1z4h_A 11 VDLKFIMADTGFGKTFIYDRIKSG 34 (66)
T ss_dssp ECHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCC
Confidence 799999999999999999888764
No 286
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=60.18 E-value=6.3 Score=34.51 Aligned_cols=40 Identities=13% Similarity=0.120 Sum_probs=28.8
Q ss_pred CHHHHHHHhHHhccCCCCCCHHHHHHHHC-----CCHHHHHHHHH
Q 010521 447 GEREREIIRLYYGLDKECLTWEDISKRIG-----LSRERVRQVGL 486 (508)
Q Consensus 447 p~rER~VI~LryGLd~eg~TleEIAe~Lg-----IS~erVrqi~~ 486 (508)
.+|=+..+...+.-+..++|++|+|+.+| ||+++++++++
T Consensus 9 ~~RL~~L~~~~~~~~~~~~T~~elA~~~~~~G~~is~s~is~~E~ 53 (135)
T 3r1f_A 9 AARLNRLFDTVYPPGRGPHTSAEVIAALKAEGITMSAPYLSQLRS 53 (135)
T ss_dssp HHHHHHHHHHCCCTTSCCCCHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHhhcccCCCCCCHHHHHHHHcccCCCcCHHHHHHHHC
Confidence 33434444444433345799999999999 99999999986
No 287
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=60.04 E-value=10 Score=28.16 Aligned_cols=50 Identities=10% Similarity=0.137 Sum_probs=37.3
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+++.|..+|...|..+ -......+||..+|++...|..+...-..|.|+
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 9 AFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 46777888888777432 122357789999999999999999887777653
No 288
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=59.75 E-value=8.6 Score=28.89 Aligned_cols=23 Identities=9% Similarity=0.068 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q 010521 464 CLTWEDISKRIGLSRERVRQVGL 486 (508)
Q Consensus 464 g~TleEIAe~LgIS~erVrqi~~ 486 (508)
+-+..+.|+.||||+.|+...+.
T Consensus 32 ~gn~~~aA~~LGisr~tL~rklk 54 (63)
T 3e7l_A 32 DYDLKRTAEEIGIDLSNLYRKIK 54 (63)
T ss_dssp TTCHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999999876553
No 289
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=59.40 E-value=34 Score=27.42 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=26.9
Q ss_pred HHhHHhccCCC-CCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 453 IIRLYYGLDKE-CLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 453 VI~LryGLd~e-g~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|.-.+ .+ +.|+.+||+.+|+|+.++.+...+.
T Consensus 10 ~i~~~~---~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 10 IIEESY---TDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHT---TCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHc---cCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 344455 34 7999999999999999999988876
No 290
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=59.38 E-value=5.6 Score=32.36 Aligned_cols=24 Identities=13% Similarity=0.113 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 464 CLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 464 g~TleEIAe~LgIS~erVrqi~~r 487 (508)
|+++.++|++.|||++|++.|++.
T Consensus 32 GikQ~eLAK~iGIsqsTLSaIenG 55 (83)
T 2l1p_A 32 DMNQSSLAKECPLSQSMISSIVNS 55 (83)
T ss_dssp TSCHHHHHHHSSSCHHHHHHHHTC
T ss_pred hcCHHHHHHHcCCCHHHHHHHHcC
Confidence 689999999999999999998764
No 291
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=59.37 E-value=10 Score=29.29 Aligned_cols=55 Identities=16% Similarity=0.156 Sum_probs=41.7
Q ss_pred cCCHHHHHHHhHHh---ccC-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHh
Q 010521 445 TLGEREREIIRLYY---GLD-K-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKK 499 (508)
Q Consensus 445 ~Lp~rER~VI~Lry---GLd-~-eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~~~ 499 (508)
.+++.+..+|...| .-+ + ......+||..+|++...|..+......+.|+.....
T Consensus 7 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~ 66 (73)
T 1puf_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTT
T ss_pred cCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccccc
Confidence 46778888888776 221 1 1234678999999999999999999999988765544
No 292
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=59.19 E-value=8.8 Score=29.65 Aligned_cols=52 Identities=12% Similarity=0.089 Sum_probs=38.2
Q ss_pred cCCHHHHHHHhHHhcc---C--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGL---D--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 496 (508)
Q Consensus 445 ~Lp~rER~VI~LryGL---d--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L 496 (508)
.+++.+..+|.-.|.- + -....-++||..+|++...|..+......|.++.+
T Consensus 13 ~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 13 VLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 4677777777766621 1 11234678999999999999999999998888654
No 293
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=59.19 E-value=19 Score=30.09 Aligned_cols=27 Identities=22% Similarity=0.230 Sum_probs=21.4
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 463 ECL-TWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 463 eg~-TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
+.+ |..++|+.||||+.+|+ +|+..|.
T Consensus 31 ~~lPs~~~La~~~~vSr~tvr----~al~~L~ 58 (113)
T 3tqn_A 31 EMIPSIRKISTEYQINPLTVS----KAYQSLL 58 (113)
T ss_dssp CEECCHHHHHHHHTCCHHHHH----HHHHHHH
T ss_pred CcCcCHHHHHHHHCcCHHHHH----HHHHHHH
Confidence 344 99999999999999997 5555554
No 294
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=58.92 E-value=13 Score=28.50 Aligned_cols=51 Identities=10% Similarity=0.055 Sum_probs=37.7
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 495 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~ 495 (508)
.+++.|..+|...|-.+ -......+||..+|++...|..+...-..|.|+.
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~ 65 (70)
T 2e1o_A 13 RFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRS 65 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCC
Confidence 45667777777776322 1223577899999999999999999888887754
No 295
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=58.70 E-value=20 Score=27.20 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=40.4
Q ss_pred cCCHHHHHHHhHHhccCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDK--ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 497 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~--eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~ 497 (508)
.+++.|..+|...|..+. ......+||..+|++...|..+...-..+.|+.-.
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 8 TFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 467778888888884321 12346789999999999999999888888876543
No 296
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=58.60 E-value=8.3 Score=35.55 Aligned_cols=27 Identities=15% Similarity=0.326 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 464 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 464 g~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+|.++||..+|+|+++|. |++++|++
T Consensus 186 ~~t~~~lA~~lG~sr~tvs----R~l~~l~~ 212 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNIS----KTLNELQD 212 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCChhHHH----HHHHHHHH
Confidence 4899999999999999996 55555553
No 297
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=58.59 E-value=15 Score=27.51 Aligned_cols=50 Identities=6% Similarity=-0.040 Sum_probs=37.7
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+++.|..+|...|..+ -......+||..+|++...|..+...-..|.|+
T Consensus 9 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk 60 (63)
T 2h1k_A 9 AYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKK 60 (63)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhh
Confidence 45677777777777432 122357789999999999999999888877775
No 298
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=58.52 E-value=5.6 Score=33.03 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++|+.++|+.+|||+.+|++++..
T Consensus 48 ~glsq~elA~~~gis~~~is~~E~G 72 (107)
T 2jvl_A 48 PTMTQAELGKEIGETAATVASYERG 72 (107)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 4699999999999999999998863
No 299
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=58.43 E-value=9.4 Score=28.27 Aligned_cols=51 Identities=18% Similarity=0.221 Sum_probs=37.3
Q ss_pred cCCHHHHHHHhHHhccC-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD-K-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 495 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd-~-eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~ 495 (508)
.+++.|..+|...|..+ + ......+||..+|++...|..+...-..|.|+.
T Consensus 5 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~ 57 (60)
T 3a02_A 5 TFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQ 57 (60)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC--
T ss_pred ccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhh
Confidence 46777888888777432 1 123477899999999999999998887777653
No 300
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=58.10 E-value=4.2 Score=38.45 Aligned_cols=43 Identities=26% Similarity=0.237 Sum_probs=31.3
Q ss_pred cCCHHHHHHHhHHhccCCCCCCH--HHHHHHHCCCHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTW--EDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~Tl--eEIAe~LgIS~erVrqi~~r 487 (508)
.|++.+..+|..-|-+..++.+. .+||+.||+++.+|.+.+.+
T Consensus 3 ~lt~~~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~ 47 (226)
T 2qq9_A 3 DLVATTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVAR 47 (226)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHH
Confidence 46677777777666442245555 99999999999999876654
No 301
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=57.94 E-value=23 Score=33.13 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHccCCHHHH--HHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010521 433 ALKDEVNKLIIVTLGERER--EIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 486 (508)
Q Consensus 433 el~e~L~~~L~~~Lp~rER--~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~ 486 (508)
++...|..++ ..++.+- .|-.+.- ..++|..++|+.+|+|+++|++++.
T Consensus 15 ~~~~~ie~~~--~e~p~~l~~~Ik~~l~---~~gitQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 15 HQKAVVETLL--QEDPWRVAKMVKSYLQ---QHNIPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp HHHHHHHHHT--TSCHHHHHHHHHHHHH---HTTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred HHHHHHHHHH--ccCHHHHHHHHHHHHH---HcCCCHHHHHHHhCCChHHHHHHHh
Confidence 3445555554 4455432 3333333 4689999999999999999999975
No 302
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=57.88 E-value=9.7 Score=35.38 Aligned_cols=36 Identities=17% Similarity=0.124 Sum_probs=26.9
Q ss_pred HHHHHHHhHHhccCCCC-CCHHHHHHHHCCCHHHHHHHHH
Q 010521 448 EREREIIRLYYGLDKEC-LTWEDISKRIGLSRERVRQVGL 486 (508)
Q Consensus 448 ~rER~VI~LryGLd~eg-~TleEIAe~LgIS~erVrqi~~ 486 (508)
+|++.|+.+-- ..+ .|.+|+|+.||||..|||.=+.
T Consensus 12 eR~~~i~~~l~---~~~~~~~~~la~~~~vs~~TiRrDl~ 48 (190)
T 4a0z_A 12 KRREAIRQQID---SNPFITDHELSDLFQVSIQTIRLDRT 48 (190)
T ss_dssp HHHHHHHHHHH---HCTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHH---HCCCEeHHHHHHHHCCCHHHHHHHHH
Confidence 45555665543 344 7999999999999999997544
No 303
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=57.87 E-value=16 Score=29.77 Aligned_cols=33 Identities=9% Similarity=0.095 Sum_probs=27.2
Q ss_pred HHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 453 IIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 453 VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|.-++ .++.|+++||+.+|+|+.++.+...+.
T Consensus 13 ~i~~~~---~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 13 YITEHF---SEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHT---TSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHh---cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 334455 468999999999999999999988876
No 304
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=57.79 E-value=2.1 Score=39.40 Aligned_cols=34 Identities=6% Similarity=0.014 Sum_probs=0.0
Q ss_pred HHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 010521 452 EIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVAL 489 (508)
Q Consensus 452 ~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rAL 489 (508)
.|+.++ .+|+|..+||+.||+|+.||.+++....
T Consensus 150 ~i~~l~----~~G~s~~~Ia~~l~vs~~T~yr~l~~~~ 183 (193)
T 3plo_X 150 QAGRLL----AQGIPRKQVALIYDVALSTLYKKHPAKR 183 (193)
T ss_dssp --------------------------------------
T ss_pred HHHHHH----HCCCCHHHHHHHHCcCHHHHHHHHhhhH
Confidence 455554 3789999999999999999987665543
No 305
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=57.57 E-value=9.9 Score=36.45 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|+|+.+||+.+|||+++|++++..
T Consensus 43 ~gltQ~evA~~tGISqS~ISq~e~~ 67 (221)
T 2h8r_A 43 HNIPQREVVDVTGLNQSHLSQHLNK 67 (221)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHhC
Confidence 5699999999999999999999973
No 306
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=57.41 E-value=16 Score=29.75 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=27.1
Q ss_pred HHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 453 IIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 453 VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|.-++ .++.|+++||+.+|+|+.++.+...+.
T Consensus 10 ~i~~~~---~~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 10 YIEANW---MRPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp HHHHHT---TSCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHcc---cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 334455 467999999999999999999988876
No 307
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=57.38 E-value=23 Score=29.06 Aligned_cols=30 Identities=10% Similarity=0.004 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHH-CCCHHHHHHHHHHHHHHH
Q 010521 463 ECLTWEDISKRI-GLSRERVRQVGLVALEKL 492 (508)
Q Consensus 463 eg~TleEIAe~L-gIS~erVrqi~~rALkKL 492 (508)
-++|+.+||+.| |....||.....+.-+.+
T Consensus 45 t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~~ 75 (94)
T 1j1v_A 45 TNHSLPEIGDAFGGRDHTTVLHACRKIEQLR 75 (94)
T ss_dssp SCCCHHHHHHHTTSCCHHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 579999999999 899999976555544443
No 308
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=57.35 E-value=8.5 Score=34.37 Aligned_cols=44 Identities=14% Similarity=0.077 Sum_probs=33.9
Q ss_pred cCCHHHHHHHhHHhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDK-ECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~-eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|..||..-+.-+. .+.|..|||+.+|+++++|.+++.+-
T Consensus 66 glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~L 110 (181)
T 2fbk_A 66 GLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRL 110 (181)
T ss_dssp TCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 699999999887652111 14899999999999999998766543
No 309
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=57.23 E-value=7.3 Score=36.37 Aligned_cols=26 Identities=15% Similarity=0.210 Sum_probs=23.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..++|++|+|+.+|+|+++|++++..
T Consensus 28 ~~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 28 ELGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp TTTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 35789999999999999999999865
No 310
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=57.04 E-value=18 Score=27.34 Aligned_cols=50 Identities=16% Similarity=0.235 Sum_probs=38.4
Q ss_pred cCCHHHHHHHhHHhccCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDK--ECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~--eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+++.|..+|...|.-+. ......+||..+|++...|..+...-..|.|+
T Consensus 7 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (67)
T 2k40_A 7 AFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKR 58 (67)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhH
Confidence 467788888888884321 12346789999999999999999888877764
No 311
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=57.01 E-value=30 Score=28.40 Aligned_cols=27 Identities=26% Similarity=0.336 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.++.|+++||+.+|+|+.++.+...+.
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 21 EEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp SSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 467999999999999999999888875
No 312
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=56.89 E-value=14 Score=30.70 Aligned_cols=45 Identities=7% Similarity=0.158 Sum_probs=30.9
Q ss_pred HHHHHccCCHHHH-HHHhHHhccCCCCCCHHHHHHHH-CCCHHHHHHHHHH
Q 010521 439 NKLIIVTLGERER-EIIRLYYGLDKECLTWEDISKRI-GLSRERVRQVGLV 487 (508)
Q Consensus 439 ~~~L~~~Lp~rER-~VI~LryGLd~eg~TleEIAe~L-gIS~erVrqi~~r 487 (508)
...+ ..+..+-+ .||..-. ..+++..|||+.+ |+++.+|.+++.+
T Consensus 13 ~~~l-~~l~~~~~~~IL~~L~---~~~~~~~eLa~~l~~is~~tvs~~L~~ 59 (112)
T 1z7u_A 13 NLAL-STINGKWKLSLMDELF---QGTKRNGELMRALDGITQRVLTDRLRE 59 (112)
T ss_dssp HHHH-HTTCSTTHHHHHHHHH---HSCBCHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHH-HHHcCccHHHHHHHHH---hCCCCHHHHHHHhccCCHHHHHHHHHH
Confidence 3444 55665544 3444333 3579999999999 9999999866554
No 313
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=56.79 E-value=2.3 Score=37.86 Aligned_cols=26 Identities=19% Similarity=0.238 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..++|++|||+.+|+|+.+|++++..
T Consensus 12 ~~gltq~elA~~lgis~~~vs~~e~G 37 (158)
T 2p5t_A 12 THDLTQLEFARIVGISRNSLSRYENG 37 (158)
T ss_dssp --------------------------
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 46899999999999999999998753
No 314
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=56.72 E-value=9 Score=34.67 Aligned_cols=25 Identities=12% Similarity=0.033 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++|++|+|+.+|||+++|+++++.
T Consensus 22 ~g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 22 VKMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999874
No 315
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=56.70 E-value=8.8 Score=34.68 Aligned_cols=25 Identities=16% Similarity=0.225 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++|++++|+.+|||+++|+++++.
T Consensus 23 ~gltq~~lA~~~gis~~~is~~e~g 47 (192)
T 1y9q_A 23 RGLSLDATAQLTGVSKAMLGQIERG 47 (192)
T ss_dssp TTCCHHHHHHHHSSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999864
No 316
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=56.46 E-value=12 Score=29.99 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHCCCHHH-HHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRER-VRQVGLVA 488 (508)
Q Consensus 463 eg~TleEIAe~LgIS~er-Vrqi~~rA 488 (508)
.+.|..|||+.+|+++.+ |.+++.+-
T Consensus 29 ~~~t~~eLa~~l~is~~t~vs~~l~~L 55 (95)
T 2pg4_A 29 YEPSLAEIVKASGVSEKTFFMGLKDRL 55 (95)
T ss_dssp CCCCHHHHHHHHCCCHHHHHTTHHHHH
T ss_pred CCCCHHHHHHHHCCCchHHHHHHHHHH
Confidence 379999999999999999 97666543
No 317
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=55.97 E-value=16 Score=26.98 Aligned_cols=50 Identities=16% Similarity=0.173 Sum_probs=37.1
Q ss_pred cCCHHHHHHHhHHhccCC-CC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDK-EC----LTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~-eg----~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+++.+..+|.-.|.-+. .+ ....+||..+|++...|..+......+.|+
T Consensus 4 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 4 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp SCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 467778888877774310 12 236789999999999999999888777663
No 318
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=55.60 E-value=24 Score=30.09 Aligned_cols=27 Identities=15% Similarity=0.382 Sum_probs=21.1
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 463 ECL-TWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 463 eg~-TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
+.+ |..+||+.||||+.+|+. |+..|.
T Consensus 35 ~~Lps~~~La~~~~vSr~tvr~----Al~~L~ 62 (125)
T 3neu_A 35 DKLPSVREMGVKLAVNPNTVSR----AYQELE 62 (125)
T ss_dssp CBCCCHHHHHHHHTCCHHHHHH----HHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHH----HHHHHH
Confidence 445 799999999999999974 555544
No 319
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=55.47 E-value=27 Score=29.62 Aligned_cols=49 Identities=18% Similarity=0.075 Sum_probs=37.2
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~L-----gIS~erVrqi~~rALkKLR 493 (508)
.|+++|..+|.+-.--.+...|.++|.+.+ ..+..+|...+.+..+||.
T Consensus 43 ~Lt~~E~~LL~~L~~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~ 96 (121)
T 2hwv_A 43 ELTHREFELLYYLAKHIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIE 96 (121)
T ss_dssp ECCHHHHHHHHHHHHTTTCCBCHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHHC
T ss_pred ECCHHHHHHHHHHHHcCCeEEcHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHh
Confidence 689999998877542124578999999998 5778888877777766664
No 320
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=55.25 E-value=12 Score=34.57 Aligned_cols=39 Identities=28% Similarity=0.285 Sum_probs=27.4
Q ss_pred HHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 451 REIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 451 R~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
..|+.-.|. .++.++..++|+.||||+.+|| .|+++|..
T Consensus 23 ~~I~~g~l~-pG~~L~e~~La~~lgVSRtpVR----EAL~~L~~ 61 (218)
T 3sxy_A 23 EMILNHELK-LGEKLNVRELSEKLGISFTPVR----DALLQLAT 61 (218)
T ss_dssp HHHHTTSSC-TTCEECHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHhCCCC-CCCEeCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 344544431 1356899999999999999997 56666653
No 321
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=55.19 E-value=20 Score=28.19 Aligned_cols=52 Identities=13% Similarity=0.204 Sum_probs=38.9
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 496 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L 496 (508)
.+++.|..+|...|-.+ -......+||..+|++...|..+...-..|.|+..
T Consensus 24 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 24 TFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 46777777777776322 11234678999999999999999999888888754
No 322
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=55.19 E-value=17 Score=29.76 Aligned_cols=53 Identities=11% Similarity=0.056 Sum_probs=41.4
Q ss_pred ccCCHHHHHHHhHHhccC-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLD-K-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 496 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd-~-eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L 496 (508)
..+++.|..+|...|--+ + ......+||..+|++...|+.+...-..|.|+..
T Consensus 39 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 93 (97)
T 1b72_A 39 TNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 93 (97)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHh
Confidence 368888889998888422 1 1234779999999999999999998888887654
No 323
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=55.03 E-value=10 Score=35.78 Aligned_cols=27 Identities=33% Similarity=0.449 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 464 CLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 464 g~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+|.++||..+|+|+++|. |++++|++
T Consensus 217 ~lt~~~lA~~lG~sr~tvs----R~l~~L~~ 243 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVG----RILKMLED 243 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHH----HHHHHHHH
Confidence 4799999999999999996 55566654
No 324
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=54.65 E-value=22 Score=33.07 Aligned_cols=28 Identities=29% Similarity=0.478 Sum_probs=22.6
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 462 KECL-TWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 462 ~eg~-TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
++.+ |-.++|+.||||+.+|| .|++.|.
T Consensus 28 G~~LPsE~eLa~~~gVSR~tVR----eAL~~L~ 56 (239)
T 1hw1_A 28 GTILPAERELSELIGVTRTTLR----EVLQRLA 56 (239)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHH----HHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHH----HHHHHHH
Confidence 3557 89999999999999997 5555554
No 325
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=54.44 E-value=5.9 Score=30.18 Aligned_cols=24 Identities=8% Similarity=0.102 Sum_probs=21.1
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 465 LTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 465 ~TleEIAe~LgIS~erVrqi~~rA 488 (508)
+|..|+|+.||||+.|+.++....
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G 26 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQG 26 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCC
Confidence 588999999999999999887654
No 326
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=54.43 E-value=11 Score=27.87 Aligned_cols=47 Identities=13% Similarity=0.199 Sum_probs=35.0
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEK 491 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkK 491 (508)
.+++.+..+|...|.-+ -......+||..+|++...|..+......+
T Consensus 11 ~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 59 (61)
T 1akh_A 11 SISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59 (61)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 57888888888887432 112357789999999999999998776554
No 327
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=54.34 E-value=20 Score=27.91 Aligned_cols=53 Identities=8% Similarity=0.033 Sum_probs=37.5
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 497 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~ 497 (508)
.+++.|..+|...|-.+ -......+||..+|++...|..+...-..+.|+...
T Consensus 19 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 19 PYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 35555666666655321 122346789999999999999999988888887654
No 328
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=54.34 E-value=20 Score=29.83 Aligned_cols=43 Identities=7% Similarity=0.084 Sum_probs=34.6
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 486 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~ 486 (508)
..|++.|+.|+.+..--+.+|.+.++|..++|++..+|.+++.
T Consensus 33 ~~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~tnL~~~~vtkiLK 75 (95)
T 2yu3_A 33 KGSDNQEKLVYQIIEDAGNKGIWSRDVRYKSNLPLTEINKILK 75 (95)
T ss_dssp CSCSHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHhCCCCCCHHHHHHHhCCCHHHHHHHHH
Confidence 5789999988888653346789999999999999988765443
No 329
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=54.18 E-value=16 Score=26.39 Aligned_cols=48 Identities=6% Similarity=-0.026 Sum_probs=35.3
Q ss_pred cCCHHHHHHHhHHhccC-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD-K-ECLTWEDISKRIGLSRERVRQVGLVALEKL 492 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd-~-eg~TleEIAe~LgIS~erVrqi~~rALkKL 492 (508)
.+++.|..+|...|-.+ + ......+||..+|++...|..+...-..|.
T Consensus 8 ~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 57 (58)
T 3rkq_A 8 LFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS 57 (58)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccC
Confidence 46777888888887432 1 123567899999999999999988766553
No 330
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=54.15 E-value=13 Score=34.74 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=22.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..+.+..+||+.||+|+.+|++.+.+
T Consensus 18 ~~~~~~~~lA~~l~vs~~tvs~~l~~ 43 (214)
T 3hrs_A 18 HNKITNKEIAQLMQVSPPAVTEMMKK 43 (214)
T ss_dssp CSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCCChhHHHHHHHH
Confidence 45799999999999999999876654
No 331
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=54.06 E-value=8.1 Score=31.63 Aligned_cols=25 Identities=8% Similarity=0.032 Sum_probs=21.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
...|..|||+.||||..|||..+.+
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~ 39 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLER 39 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 4589999999999999999877654
No 332
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=54.01 E-value=24 Score=33.63 Aligned_cols=42 Identities=21% Similarity=0.147 Sum_probs=32.3
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..|++-|+.....+.- ..|+|.++||+.+|+|+.+|++.+.-
T Consensus 116 ~~L~~~E~a~~~~~l~--~~g~t~~~iA~~lG~s~~~V~~~l~l 157 (230)
T 1vz0_A 116 EDLSPVEEARGYQALL--EMGLTQEEVARRVGKARSTVANALRL 157 (230)
T ss_dssp TTCCHHHHHHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4688888775544431 35799999999999999999887653
No 333
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=53.89 E-value=88 Score=25.41 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=25.7
Q ss_pred HHHHHHHH-cCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010521 355 NAKLRLEE-KGVTPSVDRIAEYLNMSQKKVRNATEA 389 (508)
Q Consensus 355 ~a~~~l~~-~Gr~Pt~eEIA~~Lgis~e~v~~~l~~ 389 (508)
++...+.+ ....+++++||+.+|++...+......
T Consensus 11 ~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (113)
T 3oio_A 11 EAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQ 46 (113)
T ss_dssp HHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33334433 355679999999999999999887655
No 334
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=53.67 E-value=18 Score=27.53 Aligned_cols=51 Identities=12% Similarity=0.035 Sum_probs=38.2
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 495 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~ 495 (508)
.+++.+..+|...|..+ .......+||..+|++...|..+...-..+.|+.
T Consensus 8 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 60 (68)
T 1ftt_A 8 LFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQ 60 (68)
T ss_dssp SCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhh
Confidence 45677777887777432 1223477899999999999999998888777754
No 335
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=53.44 E-value=12 Score=37.70 Aligned_cols=41 Identities=17% Similarity=0.325 Sum_probs=29.7
Q ss_pred HHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 448 EREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 448 ~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
+..+.||.+-.--+++.+|-+|||+.||||+.+|.+.+..-
T Consensus 3 ~~~~~iL~~L~~~~g~~~Sg~eLa~~lgvSr~aV~k~i~~L 43 (323)
T 3rkx_A 3 KYSQDVLQLLYKNKPNYISGQSIAESLNISRTAVKKVIDQL 43 (323)
T ss_dssp CHHHHHHHHHHHHTTSCBCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCCccCHHHHHHHHCCCHHHHHHHHHHH
Confidence 44556665542001356899999999999999999988654
No 336
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=53.40 E-value=21 Score=29.97 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=37.7
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~L-----gIS~erVrqi~~rALkKLR~ 494 (508)
.|+++|..+|.+-.--.+...|.++|.+.+ ..+..+|...+.+..+||..
T Consensus 41 ~Lt~~E~~LL~~L~~~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 95 (115)
T 2k4j_A 41 DLTRAEYEILSLLISKKGYVFSRESIAIESESINPESSNKSIDVIIGRLRSKIEK 95 (115)
T ss_dssp CSCHHHHHHHHHHHHHCCCEECHHHHHHHTCCSSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHcCCcEEcHHHHHHHHcCCCCCCchhHHHHHHHHHHHHhhc
Confidence 589999998877542124568999999999 57788888877777777653
No 337
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=53.31 E-value=22 Score=30.57 Aligned_cols=27 Identities=11% Similarity=0.159 Sum_probs=21.6
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 463 ECL-TWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 463 eg~-TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
+.+ |..++|+.||||+.+|+. |++.|.
T Consensus 26 ~~LPse~~La~~~gvSr~tVr~----Al~~L~ 53 (129)
T 2ek5_A 26 QRVPSTNELAAFHRINPATARN----GLTLLV 53 (129)
T ss_dssp SCBCCHHHHHHHTTCCHHHHHH----HHHHHH
T ss_pred CcCcCHHHHHHHHCcCHHHHHH----HHHHHH
Confidence 445 999999999999999975 555554
No 338
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=52.81 E-value=7.2 Score=35.16 Aligned_cols=23 Identities=13% Similarity=0.143 Sum_probs=21.0
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 010521 465 LTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 465 ~TleEIAe~LgIS~erVrqi~~r 487 (508)
+|..|+|+.|||++.+|++++..
T Consensus 32 LTv~EVAe~LgVs~srV~~LIr~ 54 (148)
T 2kfs_A 32 YDLPRVAELLGVPVSKVAQQLRE 54 (148)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHT
T ss_pred EcHHHHHHHhCCCHHHHHHHHHC
Confidence 79999999999999999998754
No 339
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=52.51 E-value=18 Score=35.98 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=31.5
Q ss_pred CCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 446 LGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 446 Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
..++...|+.+-- +....|.+|||+.||||+.||++.+..-
T Consensus 3 ~~~r~~~Il~~L~--~~~~~s~~eLa~~l~vS~~ti~r~l~~L 43 (321)
T 1bia_A 3 DNTVPLKLIALLA--NGEFHSGEQLGETLGMSRAAINKHIQTL 43 (321)
T ss_dssp CCHHHHHHHHHHT--TSSCBCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHH--cCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3466677776543 2356899999999999999999988753
No 340
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=52.16 E-value=16 Score=30.01 Aligned_cols=53 Identities=17% Similarity=0.016 Sum_probs=39.7
Q ss_pred cCCHHHHHHHhHHhccC-----CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD-----KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 497 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd-----~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~ 497 (508)
-||+....||.-.|.-. -....-++||+.+|+|...|..+...+..|.++.+.
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 36777777777665211 112346789999999999999999999999987654
No 341
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=52.14 E-value=34 Score=34.60 Aligned_cols=189 Identities=10% Similarity=0.074 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccCCCCCCcchhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHH
Q 010521 274 VRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFDSSKGFKISTYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLI 353 (508)
Q Consensus 274 l~LV~sIAkrY~~~g~d~EDLiQEG~IgLirAiekFDperG~rFsTYA~~wIR~~I~~~Ird~~R~irip~~~~~~l~ki 353 (508)
+..|..++.++. .-+-+.|.-.-+++-+.....-+|-+....+...|.- +++..
T Consensus 130 ~~~I~~~~~~L~-----Lp~~v~d~A~~lyk~a~~~~~~rGrs~e~vaAAclYi----ACR~~----------------- 183 (345)
T 4bbr_M 130 FAKITMLCDAAE-----LPKIVKDCAKEAYKLCHDEKTLKGKSMESIMAASILI----GCRRA----------------- 183 (345)
T ss_dssp HHHHHHHHHHTT-----CCHHHHHHHHHHHHHHTTCTTTTTCCHHHHHHHHHHH----HHHHT-----------------
T ss_pred HHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhcCCccCCCHHHHHHHHHHH----HHHhc-----------------
Confidence 345556665542 2356777777888887777766776665555433333 33332
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHhCccccccccC-CCCC--CCCCCCccccccccccCCCCccchHH
Q 010521 354 RNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAIGKVFSLDREA-FPSL--NGLPGETHHSYIADNRVENNPWHGVD 430 (508)
Q Consensus 354 r~a~~~l~~~Gr~Pt~eEIA~~Lgis~e~v~~~l~~~~~~~SLD~~~-~~~~--~~~~~~~l~d~i~d~~~e~~Pe~~ve 430 (508)
+..-+..||++.++++..++......+.+.+.+.... +... ......+..+++.--...-+-.+.+.
T Consensus 184 ----------~~prtl~eI~~~~~v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~~p~~~i~Rf~s~L~l~~~v~ 253 (345)
T 4bbr_M 184 ----------EVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGAQNLTYIPRFCSHLGLPMQVT 253 (345)
T ss_dssp ----------CCBCCHHHHHHHHTCCTTHHHHHHHHHHHCC---------------------------------------
T ss_pred ----------CCCccHHHHHHHhCCCHHHHHHHHHHHHHHhCccccccccccccccCCCCCHHHHHHHHHHHcCCcHHHH
Confidence 3344678899999999888888777765555543100 0000 00000011111111000000000000
Q ss_pred HHHHHHHHHHHHHcc-CC---HH--HHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHh
Q 010521 431 DWALKDEVNKLIIVT-LG---ER--EREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKK 499 (508)
Q Consensus 431 ~~el~e~L~~~L~~~-Lp---~r--ER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~~~ 499 (508)
..-.+.+..+.... +. |. --.+|.+---+.+...|.+|||+..|||..||++....-+..+...+...
T Consensus 254 -~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~rykel~~~~~~l~~~~ 327 (345)
T 4bbr_M 254 -TSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLVDPQ 327 (345)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred -HHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCHH
Confidence 00011111111000 11 11 11223232222246799999999999999999999888888777766443
No 342
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=52.12 E-value=59 Score=27.25 Aligned_cols=75 Identities=9% Similarity=0.146 Sum_probs=41.5
Q ss_pred hhhccCCCCCCcchhHHHHHHHHHHHHHHHHhc-ccccccccHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHH
Q 010521 305 GIEKFDSSKGFKISTYVYWWIRQGVSRALVENS-RTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKV 383 (508)
Q Consensus 305 AiekFDperG~rFsTYA~~wIR~~I~~~Ird~~-R~irip~~~~~~l~kir~a~~~l~~~Gr~Pt~eEIA~~Lgis~e~v 383 (508)
+..+|+++. +..|...++.+.+.+.+.... ....++......+..+ ...| ..+..+||+.+|++...+
T Consensus 3 ~M~~~~~~~---~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~iL~~l-------~~~~-~~t~~ela~~l~~~~~tv 71 (148)
T 3nrv_A 3 AMQKINIDR---HATAQINMLANKLMLKSSTAYTQKFGIGMTEWRIISVL-------SSAS-DCSVQKISDILGLDKAAV 71 (148)
T ss_dssp --CCSCGGG---CHHHHHHHHHHHHHHC----CCGGGTCCHHHHHHHHHH-------HHSS-SBCHHHHHHHHTCCHHHH
T ss_pred ccccccHHH---HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH-------HcCC-CCCHHHHHHHHCCCHHHH
Confidence 344555443 334555666666666655443 2223443333222222 2334 668999999999999999
Q ss_pred HHHHHHh
Q 010521 384 RNATEAI 390 (508)
Q Consensus 384 ~~~l~~~ 390 (508)
..++...
T Consensus 72 s~~l~~L 78 (148)
T 3nrv_A 72 SRTVKKL 78 (148)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988776
No 343
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=52.12 E-value=19 Score=30.45 Aligned_cols=25 Identities=16% Similarity=0.122 Sum_probs=21.0
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGL 486 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~ 486 (508)
.+..|.+|||+.+|+|+.+|++++.
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~ 48 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVS 48 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHH
Confidence 3568999999999999999975544
No 344
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=52.07 E-value=99 Score=25.47 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHHHHHh
Q 010521 320 YVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKG-VTPSVDRIAEYLNMSQKKVRNATEAI 390 (508)
Q Consensus 320 YA~~wIR~~I~~~Ird~~R~irip~~~~~~l~kir~a~~~l~~~G-r~Pt~eEIA~~Lgis~e~v~~~l~~~ 390 (508)
|..+.+...+.+.+........++......+..+ ...+ ...+..+||+.+|++...+..++...
T Consensus 7 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~vL~~l-------~~~~~~~~t~~ela~~l~~~~~tvs~~l~~L 71 (139)
T 3eco_A 7 YLFRMISHEMKQKADQKLEQFDITNEQGHTLGYL-------YAHQQDGLTQNDIAKALQRTGPTVSNLLRNL 71 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHH-------HHSTTTCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------HhcCCCCcCHHHHHHHhCCCcccHHHHHHHH
Confidence 4455566666666665554444544433333222 2333 35579999999999999999988876
No 345
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=51.90 E-value=18 Score=34.90 Aligned_cols=44 Identities=16% Similarity=0.064 Sum_probs=34.4
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.|++.|-.||..-+.-++.++|..|||+.+++++++|..++.+-
T Consensus 155 gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~i~~~tvt~~v~rL 198 (250)
T 1p4x_A 155 TLSFVEFTILAIITSQNKNIVLLKDLIETIHHKYPQTVRALNNL 198 (250)
T ss_dssp SSCHHHHHHHHHHHTTTTCCEEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 69999999887765211125899999999999999998776653
No 346
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=51.57 E-value=9.7 Score=35.22 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=21.9
Q ss_pred CCCHHHHHHHHCCCH-HHHHHHHHHHHHHHHH
Q 010521 464 CLTWEDISKRIGLSR-ERVRQVGLVALEKLKH 494 (508)
Q Consensus 464 g~TleEIAe~LgIS~-erVrqi~~rALkKLR~ 494 (508)
.+|+++||..+|+|+ ++|. |++++|++
T Consensus 169 ~~t~~~lA~~lG~sr~etvs----R~l~~l~~ 196 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVS----RIISKLKQ 196 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHH----HHHHHHHH
T ss_pred cCCHHHHHHHhCCChHHHHH----HHHHHHHH
Confidence 689999999999999 7996 55555553
No 347
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=51.47 E-value=8.7 Score=32.05 Aligned_cols=26 Identities=8% Similarity=0.162 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Q 010521 464 CLTWEDISKRIGLSRERVRQVGLVAL 489 (508)
Q Consensus 464 g~TleEIAe~LgIS~erVrqi~~rAL 489 (508)
++|..|+|+.+|||..|++.+...++
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~~Gl 26 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDDIGL 26 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 37899999999999999999987654
No 348
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=51.41 E-value=12 Score=28.75 Aligned_cols=20 Identities=15% Similarity=0.170 Sum_probs=19.2
Q ss_pred CHHHHHHHHCCCHHHHHHHH
Q 010521 466 TWEDISKRIGLSRERVRQVG 485 (508)
Q Consensus 466 TleEIAe~LgIS~erVrqi~ 485 (508)
|+.+.|+.||||+.+|++.+
T Consensus 15 s~t~aA~~L~vtQ~AVS~~i 34 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAI 34 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHH
Confidence 99999999999999999986
No 349
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=51.18 E-value=25 Score=26.89 Aligned_cols=52 Identities=19% Similarity=0.243 Sum_probs=39.2
Q ss_pred cCCHHHHHHHhHHhcc-C-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGL-D-K-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 496 (508)
Q Consensus 445 ~Lp~rER~VI~LryGL-d-~-eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L 496 (508)
.+++.|..+|...|.- + + ......+||..+|++...|..+...-..|.|+.-
T Consensus 7 ~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 7 TMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 4677888888888731 2 1 1234779999999999999999988888877643
No 350
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=51.05 E-value=15 Score=28.87 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=37.7
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 495 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~ 495 (508)
.+++.|..+|...|-.+ -......+||..+|++...|..+...-..|.|+.
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~ 65 (80)
T 2dms_A 13 TFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQ 65 (80)
T ss_dssp SCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHT
T ss_pred CCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHH
Confidence 45667777777776322 1123477899999999999999998888887764
No 351
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=51.02 E-value=32 Score=26.93 Aligned_cols=49 Identities=24% Similarity=0.328 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHccCCHHHHHHHhHHhc-cCCCC---CCHHHHHHHHCCCHHHHHHH
Q 010521 432 WALKDEVNKLIIVTLGEREREIIRLYYG-LDKEC---LTWEDISKRIGLSRERVRQV 484 (508)
Q Consensus 432 ~el~e~L~~~L~~~Lp~rER~VI~LryG-Ld~eg---~TleEIAe~LgIS~erVrqi 484 (508)
..+...+. . .++++++.|...--| ||..| .+.++||+.+|++...|...
T Consensus 16 ehL~~Ql~-~---~~~~~~~~Ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~v 68 (76)
T 2k9l_A 16 EELQQNIK-L---ELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKV 68 (76)
T ss_dssp HHHHHHHH-H---HCCTTSHHHHHHHHHHCTTSSTTCCCHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHc-c---cCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHH
Confidence 34445554 2 489999887765444 45455 68999999999999988543
No 352
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=50.98 E-value=1.1e+02 Score=25.68 Aligned_cols=65 Identities=11% Similarity=0.043 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHh
Q 010521 319 TYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (508)
Q Consensus 319 TYA~~wIR~~I~~~Ird~~R~irip~~~~~~l~kir~a~~~l~~~Gr~Pt~eEIA~~Lgis~e~v~~~l~~~ 390 (508)
.|..+.+.+.+.+.+........++......+..+ ...+...+..+||+.++++...+..++...
T Consensus 14 ~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~~l-------~~~~~~~t~~eLa~~l~i~~~tvs~~l~~L 78 (150)
T 3fm5_A 14 GFLLSRVGGMVLGAVNKALVPTGLRVRSYSVLVLA-------CEQAEGVNQRGVAATMGLDPSQIVGLVDEL 78 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCHHHHHHHHHH-------HHSTTCCCSHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHH-------HhCCCCcCHHHHHHHHCCCHhHHHHHHHHH
Confidence 45555566666666655544444544333322222 223333589999999999999999988876
No 353
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=50.83 E-value=10 Score=29.46 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=26.3
Q ss_pred CHHHHHHHHCCCHHHHHHHHHHH-----HHHHHHHHHHh
Q 010521 466 TWEDISKRIGLSRERVRQVGLVA-----LEKLKHAARKK 499 (508)
Q Consensus 466 TleEIAe~LgIS~erVrqi~~rA-----LkKLR~~L~~~ 499 (508)
|++++|+.+|||+++|+++++.- +..|.+.....
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~~~p~~~~l~~ia~~l 67 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRIATPAFFTIAAVARVL 67 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCSSCBHHHHHHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCCCHHHHHHHHHHh
Confidence 99999999999999999998742 34555554443
No 354
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=50.80 E-value=9.2 Score=35.07 Aligned_cols=23 Identities=17% Similarity=0.101 Sum_probs=19.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q 010521 464 CLTWEDISKRIGLSRERVRQVGL 486 (508)
Q Consensus 464 g~TleEIAe~LgIS~erVrqi~~ 486 (508)
++|.++||..+|+|+++|.+++.
T Consensus 178 ~~t~~~iA~~lg~sr~tvsR~l~ 200 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKPESLSRAFS 200 (237)
T ss_dssp CSCTHHHHHHTTCCHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHH
Confidence 57899999999999999964443
No 355
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=50.50 E-value=25 Score=32.87 Aligned_cols=43 Identities=14% Similarity=0.003 Sum_probs=30.1
Q ss_pred cCCHHHHHHHhHHhccC-CCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD-KECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd-~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
-|+..||--=..+. |+ +...+++++|+.+|||+..|++.+.-|
T Consensus 23 plS~yErg~~y~r~-L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A 66 (189)
T 3mky_B 23 PTSAYERGQRYASR-LQNEFAGNISALADAENISRKIITRCINTA 66 (189)
T ss_dssp CCCHHHHHHHHHHH-HHTTTTTCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-HhcCcccCHHHHHHHHCCCHHHHHHHHHHh
Confidence 45555555444443 31 346899999999999999998777655
No 356
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=50.46 E-value=19 Score=31.48 Aligned_cols=26 Identities=12% Similarity=0.169 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..++++.||++.+|||+.+|.+++.+
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~ 60 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRN 60 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHH
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 35799999999999999999876654
No 357
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=50.38 E-value=9.2 Score=29.95 Aligned_cols=49 Identities=18% Similarity=0.201 Sum_probs=33.4
Q ss_pred CCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 446 LGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 446 Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
+++.|..+|...|-.+ -.....++||..+|++...|..+...-..|.|+
T Consensus 24 ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 74 (80)
T 2da3_A 24 ITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERK 74 (80)
T ss_dssp CCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhh
Confidence 4444555555554211 122345789999999999999999988887764
No 358
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=50.22 E-value=12 Score=33.07 Aligned_cols=39 Identities=10% Similarity=0.136 Sum_probs=27.1
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVG 485 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~ 485 (508)
.+++.++.++..... ..+.+..+||+.+|+|+.||++.+
T Consensus 139 ~~~~~~~~~~~~~~~--~~~~~~~~ia~~l~is~~tv~~~l 177 (184)
T 3rqi_A 139 SVDRLEWEHIQRVLA--ENNNNISATARALNMHRRTLQRKL 177 (184)
T ss_dssp C---CHHHHHHHHHH--HTTSCHHHHHHHHTSCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH--hccccHHHHHHHcCCcHHHHHHHH
Confidence 345556666655441 357899999999999999997654
No 359
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=49.91 E-value=13 Score=29.04 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=36.9
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+++.|..+|...|-.+ -.....++||..+|++...|..+...-..|.|+
T Consensus 14 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk 65 (76)
T 2dn0_A 14 KKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRN 65 (76)
T ss_dssp CCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSS
T ss_pred cCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHH
Confidence 46666777777666332 123467899999999999999999887776654
No 360
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=49.90 E-value=34 Score=27.23 Aligned_cols=49 Identities=14% Similarity=0.191 Sum_probs=35.9
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~L-----gIS~erVrqi~~rALkKLR 493 (508)
.|+++|..+|.+-.--.+...|.++|.+.+ ..+..+|.+.+.+-.+||.
T Consensus 22 ~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~ 75 (96)
T 3rjp_A 22 SLTKREYDLLNILMTNMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKID 75 (96)
T ss_dssp ECCHHHHHHHHHHHHTTTSCBCHHHHHHHHSSSCSSCCTHHHHHHHHHHHHHHC
T ss_pred EcCHHHHHHHHHHHhCCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhc
Confidence 689999998877552224568999999998 2677788777666666654
No 361
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=49.59 E-value=22 Score=28.92 Aligned_cols=26 Identities=12% Similarity=0.158 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
++.|+++||+.+|+|+.++.+...+.
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 67999999999999999999888875
No 362
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=49.57 E-value=21 Score=29.04 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHh
Q 010521 464 CLTWEDISKRIGLSRERVRQVGLVALEKLKHAARKK 499 (508)
Q Consensus 464 g~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~~~ 499 (508)
..++..||+.+||+.++|+++..--+.++...|..-
T Consensus 24 ~~gQ~~vAe~~GvdeStISR~k~~~~~~~~~lLa~L 59 (83)
T 1zs4_A 24 MLGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLAVL 59 (83)
T ss_dssp HHCHHHHHHHHTSCHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHhhHHHHHHhCCCHHHHhhhhhhHHHHHHHHHHHh
Confidence 368999999999999999999887777776666543
No 363
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=49.40 E-value=26 Score=29.07 Aligned_cols=43 Identities=19% Similarity=0.094 Sum_probs=31.2
Q ss_pred cCCHHHHHHHh-HHhcc---CCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 445 TLGEREREIIR-LYYGL---DKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 445 ~Lp~rER~VI~-LryGL---d~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|++.|-.|+. |.... .+...++.+||+.++++++++++.+.+
T Consensus 13 gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l~~stLsR~l~r 59 (96)
T 2obp_A 13 GIDPAIVEVLLVLREAGIENGATPWSLPKIAKRAQLPMSVLRRVLTQ 59 (96)
T ss_dssp CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHhCCchhhHHHHHHH
Confidence 47777777766 43310 125689999999999999999866554
No 364
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=49.23 E-value=19 Score=36.36 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=32.1
Q ss_pred CCHHHHHHHhHHh--cc-CCCCCCHHHHHHHH--CCCHHHHHHHHH
Q 010521 446 LGEREREIIRLYY--GL-DKECLTWEDISKRI--GLSRERVRQVGL 486 (508)
Q Consensus 446 Lp~rER~VI~Lry--GL-d~eg~TleEIAe~L--gIS~erVrqi~~ 486 (508)
|++|++.|+..-. .+ ..++.+.+++|+.+ |+|..|||+-+.
T Consensus 15 l~eR~~~IL~~i~~~yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~ 60 (338)
T 1stz_A 15 LNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMK 60 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccHHHHHHHhCCCCCHHHHHHHHH
Confidence 7899999998300 01 14789999999999 999999987654
No 365
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=49.07 E-value=19 Score=31.23 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.+.|..+||+.+|+|+.+|++.+.+
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~ 77 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKR 77 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHH
Confidence 5689999999999999999865554
No 366
>4ich_A Transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, transcription RE; 1.95A {Saccharomonospora viridis}
Probab=49.06 E-value=12 Score=36.21 Aligned_cols=24 Identities=17% Similarity=0.171 Sum_probs=21.2
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVG 485 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~ 485 (508)
+++.|..+||+..|||+.++-...
T Consensus 138 ~~~~T~~~IA~~AGvs~gtlY~yF 161 (311)
T 4ich_A 138 YHNVRIHDIASELGTSNATIHYHF 161 (311)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred CccCCHHHHHHHhCCCchhHHHhC
Confidence 678999999999999999997654
No 367
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=48.84 E-value=1.3e+02 Score=26.01 Aligned_cols=65 Identities=11% Similarity=0.017 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHh
Q 010521 319 TYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (508)
Q Consensus 319 TYA~~wIR~~I~~~Ird~~R~irip~~~~~~l~kir~a~~~l~~~Gr~Pt~eEIA~~Lgis~e~v~~~l~~~ 390 (508)
.|....+.+.+.+.+........++......+..+ ...+...+..+||+.++++...+..++...
T Consensus 28 ~~~l~~~~~~~~~~~~~~l~~~glt~~q~~vL~~L-------~~~~~~~t~~eLa~~l~i~~~tvs~~l~~L 92 (166)
T 3deu_A 28 GSDLARLVRIWRALIDHRLKPLELTQTHWVTLHNI-------HQLPPDQSQIQLAKAIGIEQPSLVRTLDQL 92 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTCCHHHHHHHHHH-------HHSCSSEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHH-------HHcCCCCCHHHHHHHHCCCHhhHHHHHHHH
Confidence 35555566666666665554444544433322222 223445689999999999999999988776
No 368
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=48.76 E-value=26 Score=32.47 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=26.8
Q ss_pred HHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 451 REIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 451 R~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
..|+.-.|. .++.++..++|+.||||+.+|| .|+++|.
T Consensus 27 ~~I~~g~l~-pG~~L~E~~La~~lgVSRtpVR----EAl~~L~ 64 (222)
T 3ihu_A 27 SGLELGTFV-PGQRLVETDLVAHFGVGRNSVR----EALQRLA 64 (222)
T ss_dssp HHHHHTSSC-TTCEECHHHHHHHHTCCHHHHH----HHHHHHH
T ss_pred HHHHhCCCC-CCCccCHHHHHHHHCCCHHHHH----HHHHHHH
Confidence 345544441 1356789999999999999997 5666554
No 369
>3egq_A TETR family transcriptional regulator; DNA-binding, transcription regulation, bacterial regulatory DNA/RNA-binding 3-helical bundle fold; HET: MSE PE8; 2.55A {Archaeoglobus fulgidus}
Probab=48.74 E-value=18 Score=30.91 Aligned_cols=24 Identities=13% Similarity=0.094 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVG 485 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~ 485 (508)
+++.|..+||+..|||+.++-...
T Consensus 22 ~~~~t~~~Ia~~agvs~~t~Y~~F 45 (170)
T 3egq_A 22 PHEVSIEEIAREAKVSKSLIFYHF 45 (170)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHC
T ss_pred CccCcHHHHHHHhCCCchhHHHHc
Confidence 578999999999999999997764
No 370
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=48.71 E-value=35 Score=29.76 Aligned_cols=24 Identities=17% Similarity=0.026 Sum_probs=20.6
Q ss_pred CCHHHHHHHhCCCHHHHHHHHHHh
Q 010521 367 PSVDRIAEYLNMSQKKVRNATEAI 390 (508)
Q Consensus 367 Pt~eEIA~~Lgis~e~v~~~l~~~ 390 (508)
-+..+||+.+|++..+|...+...
T Consensus 42 ~s~~~IA~~lgis~~TV~rwl~r~ 65 (159)
T 2k27_A 42 VRPCDISRQLRVSHGCVSKILGRY 65 (159)
T ss_dssp CCHHHHHHHHTCCSHHHHHHHCCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 478899999999999999887654
No 371
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=48.04 E-value=29 Score=26.65 Aligned_cols=52 Identities=17% Similarity=0.188 Sum_probs=39.0
Q ss_pred cCCHHHHHHHhHHhcc-C-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGL-D-K-ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAA 496 (508)
Q Consensus 445 ~Lp~rER~VI~LryGL-d-~-eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L 496 (508)
.+++.|..+|...|.. + + ......+||..+|++...|..+...-..+.|+.-
T Consensus 8 ~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 8 GPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp SCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 4677788888777731 2 1 1234778999999999999999988888877643
No 372
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=48.03 E-value=1.1e+02 Score=26.59 Aligned_cols=74 Identities=4% Similarity=-0.037 Sum_probs=55.6
Q ss_pred CCCchHHHHHHhccChHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHh-hhccC
Q 010521 237 CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRG-IEKFD 310 (508)
Q Consensus 237 ~~p~~~~~a~~~~~s~~~L~~~l~e~~~A~e~LIe~yl~LV~sIAkrY~~~g~d~EDLiQEG~IgLirA-iekFD 310 (508)
...+.+++|+.+|++...+-+--...++-+..++..+..-+..........+.+..+.+...+..++.. +...+
T Consensus 33 ~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 107 (212)
T 3knw_A 33 VGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTETSARDKLMNYLQCWVKDPATEQS 107 (212)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHC------
T ss_pred ccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHhhcc
Confidence 368999999999999999999999888888888888877777776666555677777777766666666 44444
No 373
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.99 E-value=14 Score=29.16 Aligned_cols=50 Identities=16% Similarity=0.078 Sum_probs=35.2
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+++.|..+|...|-.+ -......+||..+|++...|..+...-..|.|+
T Consensus 23 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk 74 (80)
T 2dmt_A 23 VFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKK 74 (80)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhc
Confidence 35666666666666321 122347789999999999999999887777654
No 374
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=47.93 E-value=1.1e+02 Score=25.29 Aligned_cols=63 Identities=11% Similarity=0.047 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHh
Q 010521 320 YVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (508)
Q Consensus 320 YA~~wIR~~I~~~Ird~~R~irip~~~~~~l~kir~a~~~l~~~Gr~Pt~eEIA~~Lgis~e~v~~~l~~~ 390 (508)
|....+.+.+.+.+........++......+..+.. . ...+..+||+.+|++...+..++...
T Consensus 13 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~l~~-------~-~~~t~~eLa~~l~~~~~~vs~~l~~L 75 (143)
T 3oop_A 13 FDVNTTAKKMHLFLMRSIASYDVTPEQWSVLEGIEA-------N-EPISQKEIALWTKKDTPTVNRIVDVL 75 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSSCHHHHHHHHHHHH-------H-SSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHH-------c-CCcCHHHHHHHHCCCHhhHHHHHHHH
Confidence 444455555555665555444454443333332221 1 34578999999999999999988776
No 375
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=47.89 E-value=10 Score=29.60 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 464 CLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 464 g~TleEIAe~LgIS~erVrqi~~r 487 (508)
-+|.+|.|+.|||++.+|+++...
T Consensus 16 ~LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 16 TLTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp EEEHHHHHHHTCSCHHHHHHHHHH
T ss_pred eeCHHHHHHHHCcCHHHHHHHHHc
Confidence 379999999999999999988755
No 376
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=47.86 E-value=29 Score=32.71 Aligned_cols=38 Identities=29% Similarity=0.301 Sum_probs=26.8
Q ss_pred HHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 451 REIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 451 R~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
..|+.-.|- .++.++..++|+.||||+.+|| .|+++|.
T Consensus 39 ~~I~~g~l~-pG~~L~e~~La~~lgVSRtpVR----EAL~~L~ 76 (239)
T 2hs5_A 39 DAIIDGTFR-PGARLSEPDICAALDVSRNTVR----EAFQILI 76 (239)
T ss_dssp HHHHHTSSC-TTCEECHHHHHHHHTCCHHHHH----HHHHHHH
T ss_pred HHHHcCCCC-CcCEeCHHHHHHHHCCCHHHHH----HHHHHHH
Confidence 345554431 1355799999999999999997 5565554
No 377
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=47.55 E-value=16 Score=34.59 Aligned_cols=28 Identities=32% Similarity=0.474 Sum_probs=23.1
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
++.++..++|+.||||+.+|| +|++.|.
T Consensus 47 G~~L~e~~La~~lgVSr~~VR----eAL~~L~ 74 (237)
T 3c7j_A 47 GTALRQQELATLFGVSRMPVR----EALRQLE 74 (237)
T ss_dssp TCBCCHHHHHHHHTSCHHHHH----HHHHHHH
T ss_pred cCeeCHHHHHHHHCCCHHHHH----HHHHHHH
Confidence 456899999999999999997 5666554
No 378
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=47.45 E-value=10 Score=30.70 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=25.6
Q ss_pred CHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010521 447 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 486 (508)
Q Consensus 447 p~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~ 486 (508)
..-|+.+|...+- ..+.+..+.|+.||||+.|+...+.
T Consensus 49 ~~~E~~~i~~aL~--~~~gn~~~aA~~LGIsr~tL~rklk 86 (91)
T 1ntc_A 49 PELERTLLTTALR--HTQGHKQEAARLLGWGAATLTAKLK 86 (91)
T ss_dssp HHHHHHHHHHHHH--HTTTCTTHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HhCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3446666655441 2245677999999999999965543
No 379
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=47.45 E-value=1.1e+02 Score=24.57 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Q 010521 365 VTPSVDRIAEYLNMSQKKVRNATEA 389 (508)
Q Consensus 365 r~Pt~eEIA~~Lgis~e~v~~~l~~ 389 (508)
..++.++||+.+|++...+......
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~ 43 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQ 43 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 5678999999999999999887654
No 380
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=47.24 E-value=35 Score=31.89 Aligned_cols=39 Identities=26% Similarity=0.283 Sum_probs=26.4
Q ss_pred HHHHhHHhccCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 451 REIIRLYYGLDKECL-TWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 451 R~VI~LryGLd~eg~-TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
..|+.-.|. .++.+ +-.++|+.||||+.+|| .|++.|..
T Consensus 15 ~~I~~g~l~-pG~~LpsE~~La~~lgVSRtpVR----EAL~~L~~ 54 (239)
T 2di3_A 15 EELRSGRLK-IGDHLPSERALSETLGVSRSSLR----EALRVLEA 54 (239)
T ss_dssp HHHHHTSSC-TTCBCCCHHHHHHHHTCCHHHHH----HHHHHHHH
T ss_pred HHHHhCCCC-CCCcCCCHHHHHHHHCCCHHHHH----HHHHHHHH
Confidence 344544431 13556 67899999999999997 66666653
No 381
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=47.12 E-value=20 Score=28.97 Aligned_cols=51 Identities=8% Similarity=-0.055 Sum_probs=37.5
Q ss_pred ccCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
...++.|..+|...|--+ -.....++||..+|++...|..+...-..|.|+
T Consensus 18 k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~ 70 (89)
T 2dmp_A 18 KEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDS 70 (89)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHH
Confidence 346777777777776332 122457899999999999999999887777654
No 382
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=46.82 E-value=12 Score=32.02 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=21.5
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 463 ECL-TWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 463 eg~-TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
+.+ |..++|+.||||+.+|+. |+..|.
T Consensus 33 ~~lPse~~La~~~~vSr~tvr~----Al~~L~ 60 (126)
T 3by6_A 33 DQLPSVRETALQEKINPNTVAK----AYKELE 60 (126)
T ss_dssp CEECCHHHHHHHHTCCHHHHHH----HHHHHH
T ss_pred CcCcCHHHHHHHHCcCHHHHHH----HHHHHH
Confidence 445 999999999999999975 555544
No 383
>4dyq_A Gene 1 protein; GP1, octamer, DNA-binding, viral protein; 1.50A {Shigella phage SF6} PDB: 4dyc_A 4dyr_A 3hef_A 4dzj_A 4dzp_A
Probab=46.46 E-value=25 Score=30.67 Aligned_cols=40 Identities=13% Similarity=-0.009 Sum_probs=29.6
Q ss_pred CCHHHHHHHhHHhccCCCCCCHHHHHHHHCC-CHHHHHHHHHHH
Q 010521 446 LGEREREIIRLYYGLDKECLTWEDISKRIGL-SRERVRQVGLVA 488 (508)
Q Consensus 446 Lp~rER~VI~LryGLd~eg~TleEIAe~LgI-S~erVrqi~~rA 488 (508)
+++.-.+-|..+. -.|+|+.+|++..|| |+.||..++.+-
T Consensus 13 ~t~e~~e~I~~~i---~~G~sl~~i~~~~~~ps~~T~~~W~~~~ 53 (140)
T 4dyq_A 13 YMPEVADDICSLL---SSGESLLKVCKRPGMPDKSTVFRWLAKH 53 (140)
T ss_dssp CCTTHHHHHHHHH---HTTCCHHHHHTSTTCCCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHH---HCCCcHHHHHhcCCCCCHHHHHHHHHcC
Confidence 3333333344444 478999999999999 999999998774
No 384
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=46.46 E-value=13 Score=28.37 Aligned_cols=50 Identities=10% Similarity=0.150 Sum_probs=36.0
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+++.|..+|...|-.+ -......+||..+|++...|..+...-..|.|+
T Consensus 13 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk 64 (70)
T 2da2_A 13 RFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARK 64 (70)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhh
Confidence 45666777777766322 122347789999999999999999887777654
No 385
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=46.40 E-value=27 Score=28.78 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=36.7
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~L-----gIS~erVrqi~~rALkKLR 493 (508)
.|+++|..+|.+-.--.+...|.++|.+.+ ..+..+|...+.+-.+||.
T Consensus 34 ~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 87 (110)
T 2pmu_A 34 SLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKID 87 (110)
T ss_dssp CCCHHHHHHHHHHHHTTTSCBCHHHHHHHHSCTTCCSSSCHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHHHCCCEEEcHHHHHHHHcCCCCCCccchHHHHHHHHHHHhc
Confidence 589999998877542124568999999998 4677788877777766664
No 386
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=46.36 E-value=24 Score=28.18 Aligned_cols=51 Identities=8% Similarity=0.052 Sum_probs=39.3
Q ss_pred ccCCHHHHHHHhHHhccCC--CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDK--ECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~--eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
..+++.|..+|...|-.+. ......+||..+|++...|..+...-..|.|+
T Consensus 33 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 85 (88)
T 2r5y_A 33 TSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 85 (88)
T ss_dssp CCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHh
Confidence 3678888888888884321 12357799999999999999999888777764
No 387
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=46.34 E-value=32 Score=28.07 Aligned_cols=49 Identities=10% Similarity=0.153 Sum_probs=36.6
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~L-----gIS~erVrqi~~rALkKLR 493 (508)
.|+++|..+|.+-.--.++..|.++|.+.+ ..+..+|...+.+-.+||.
T Consensus 31 ~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 84 (106)
T 1gxq_A 31 EMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALE 84 (106)
T ss_dssp CCCHHHHHHHHHHHHSCSSEECHHHHHHHHTCSSSCCCTHHHHHHHHHHHHHHG
T ss_pred EcCHHHHHHHHHHHHCCCeeEcHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhc
Confidence 589999998877552224568999999998 4677888777776666664
No 388
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=46.27 E-value=21 Score=28.14 Aligned_cols=52 Identities=10% Similarity=0.017 Sum_probs=39.1
Q ss_pred ccCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 495 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~ 495 (508)
..+++.|..+|...|.-+ -......+||..+|++...|..+...-..|.|+.
T Consensus 25 t~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 25 QTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp CCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred cccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 357777888887777332 1223477899999999999999998888877753
No 389
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=46.17 E-value=31 Score=32.88 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=21.9
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 463 ECL-TWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 463 eg~-TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
+.+ |..|+|+.+|||+.||| +|+..|.
T Consensus 34 ~~lPse~~La~~~~vSr~tvr----~Al~~L~ 61 (248)
T 3f8m_A 34 DPFPAEREIAEQFEVARETVR----QALRELL 61 (248)
T ss_dssp CBCCCHHHHHHHTTCCHHHHH----HHHHHHH
T ss_pred CcCcCHHHHHHHHCcCHHHHH----HHHHHHH
Confidence 456 99999999999999997 5555554
No 390
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=45.85 E-value=33 Score=28.30 Aligned_cols=40 Identities=13% Similarity=0.104 Sum_probs=29.4
Q ss_pred CCHHHHH-HHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 446 LGERERE-IIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 446 Lp~rER~-VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
-+..++. ||.... ..+.|..|+|+++|||.+.+.++...-
T Consensus 33 Ws~~~Kl~VV~~~~---~g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 33 WVASRKAAVVKAVI---HGLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp CCHHHHHHHHHHHH---TTSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHH---cCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 3444544 443333 467899999999999999999998763
No 391
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=45.09 E-value=16 Score=29.35 Aligned_cols=22 Identities=9% Similarity=0.297 Sum_probs=18.2
Q ss_pred CCHHHHHHHHCCCHHHHHHHHH
Q 010521 465 LTWEDISKRIGLSRERVRQVGL 486 (508)
Q Consensus 465 ~TleEIAe~LgIS~erVrqi~~ 486 (508)
-+..+.|+.||||+.|+...+.
T Consensus 55 GN~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 55 RNVSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp SCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHH
Confidence 4788999999999999875543
No 392
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.08 E-value=19 Score=27.96 Aligned_cols=50 Identities=4% Similarity=0.007 Sum_probs=36.3
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
..++.|..+|...|-.+ -......+||..+|++...|..+...-..+.|+
T Consensus 13 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk 64 (75)
T 2da5_A 13 ERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNA 64 (75)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHH
T ss_pred cCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHH
Confidence 45666777777766322 122357789999999999999999887777665
No 393
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=44.97 E-value=41 Score=28.35 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=24.3
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
.++.|+++||+.+|+|+.++.++..+.
T Consensus 25 ~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 25 ESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp TSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 467999999999999999999888876
No 394
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=44.48 E-value=24 Score=33.76 Aligned_cols=26 Identities=27% Similarity=0.272 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..+.|.++||+.+|+++++|+..+.+
T Consensus 176 ~~~~t~~~la~~~~l~~~~V~~~l~~ 201 (232)
T 2qlz_A 176 NGRATVEELSDRLNLKEREVREKISE 201 (232)
T ss_dssp SSEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 57899999999999999999877654
No 395
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=44.22 E-value=8.5 Score=31.43 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=19.4
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHH
Q 010521 463 ECL-TWEDISKRIGLSRERVRQVG 485 (508)
Q Consensus 463 eg~-TleEIAe~LgIS~erVrqi~ 485 (508)
+.+ |..|||+.||||+.+|++.+
T Consensus 33 ~~lps~~eLa~~~~vSr~tvr~al 56 (102)
T 1v4r_A 33 DTLPSVADIRAQFGVAAKTVSRAL 56 (102)
T ss_dssp SBCCCHHHHHHHSSSCTTHHHHHT
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHH
Confidence 445 99999999999999998543
No 396
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=44.10 E-value=24 Score=29.40 Aligned_cols=26 Identities=12% Similarity=-0.001 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.++.|+.+||+.+|+|+.++.+...+
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 21 AHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 46799999999999999999887755
No 397
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=44.02 E-value=7 Score=32.52 Aligned_cols=44 Identities=14% Similarity=0.120 Sum_probs=34.2
Q ss_pred ccCCHHHHHHHhHHhccCCCCCCHHHHHHHHC----CCHHHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLDKECLTWEDISKRIG----LSRERVRQVGLVAL 489 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd~eg~TleEIAe~Lg----IS~erVrqi~~rAL 489 (508)
..|++.|..|+..-.. .++.|..||++.++ ++..||..++.+-.
T Consensus 31 ~~LT~~e~~VL~~L~~--~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe 78 (99)
T 2k4b_A 31 FNVSNAELIVMRVIWS--LGEARVDEIYAQIPQELEWSLATVKTLLGRLV 78 (99)
T ss_dssp CCCCCSCSHHHHHHHH--HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh--CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHH
Confidence 4799999988877642 35799999999997 57899977666543
No 398
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=43.72 E-value=21 Score=33.30 Aligned_cols=38 Identities=21% Similarity=0.289 Sum_probs=29.0
Q ss_pred CHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 447 GEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 447 p~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
++....||.+-. ..++|..|||+.+|+|.++|.+.+.+
T Consensus 14 ~~~rl~IL~~L~---~~~~s~~eLa~~l~is~stvs~hLk~ 51 (202)
T 2p4w_A 14 NETRRRILFLLT---KRPYFVSELSRELGVGQKAVLEHLRI 51 (202)
T ss_dssp SHHHHHHHHHHH---HSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHH---hCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 455566665543 46899999999999999999866543
No 399
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=43.71 E-value=1.2e+02 Score=24.18 Aligned_cols=27 Identities=7% Similarity=0.119 Sum_probs=22.6
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010521 363 KGVTPSVDRIAEYLNMSQKKVRNATEA 389 (508)
Q Consensus 363 ~Gr~Pt~eEIA~~Lgis~e~v~~~l~~ 389 (508)
....++.++||+.+|+++..+......
T Consensus 15 ~~~~~~~~~lA~~~~~s~~~l~r~fk~ 41 (108)
T 3mn2_A 15 WMRPITIEKLTALTGISSRGIFKAFQR 41 (108)
T ss_dssp TTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 355679999999999999999887654
No 400
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=43.57 E-value=13 Score=32.67 Aligned_cols=44 Identities=20% Similarity=0.346 Sum_probs=33.6
Q ss_pred ccCCHHHHHHHhHHh-ccCCCCCCHHHHHH----HH--CCCHHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYY-GLDKECLTWEDISK----RI--GLSRERVRQVGLVA 488 (508)
Q Consensus 444 ~~Lp~rER~VI~Lry-GLd~eg~TleEIAe----~L--gIS~erVrqi~~rA 488 (508)
..|+-.|+.-|+.++ -- ..++|..+||+ .+ ||+++||+.++..-
T Consensus 10 ~~lT~~qK~~i~~~~~~~-~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 10 RAITEHEKRALRHYFFQL-QNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp SCCCSHHHHHHHHHHHSS-SSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 357777777666665 21 25699999999 99 99999999988663
No 401
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=43.46 E-value=19 Score=29.58 Aligned_cols=49 Identities=8% Similarity=0.032 Sum_probs=36.5
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~L-----gIS~erVrqi~~rALkKLR 493 (508)
.|+++|..+|.+-.--.+...|.++|.+.+ ..+..+|+..+.+-.+||.
T Consensus 31 ~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 84 (110)
T 1opc_A 31 PLTSGEFAVLKALVSHPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVE 84 (110)
T ss_dssp CCCHHHHHHHHHHHHSTTCCEEHHHHHHHHCCSSSCTTSSCHHHHHHHHHHHHC
T ss_pred EcCHHHHHHHHHHHHcCCceEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhh
Confidence 589999998877552224568999999999 5677788777777666664
No 402
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=43.40 E-value=12 Score=28.63 Aligned_cols=50 Identities=14% Similarity=-0.009 Sum_probs=35.6
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+++.|..+|...|-.+ -......+||..+|++...|..+...-..|.|+
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk 64 (70)
T 2cra_A 13 PYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 64 (70)
T ss_dssp CSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTS
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcc
Confidence 35666777777766322 122346789999999999999999877766553
No 403
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=43.35 E-value=10 Score=33.59 Aligned_cols=25 Identities=8% Similarity=0.130 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
..+|+++||..+|+|+++|+++..+
T Consensus 167 ~~~t~~~iA~~lG~sretlsR~l~~ 191 (194)
T 3dn7_A 167 QRVPQYLLASYLGFTPEYLSEIRKK 191 (194)
T ss_dssp -------------------------
T ss_pred HHCCHHHHHHHhCCCHHHHHHHHHh
Confidence 4689999999999999999876654
No 404
>1xwr_A Regulatory protein CII; all-alpha fold, DNA binding protein; 2.56A {Bacteriophage lambda} SCOP: a.35.1.9 PDB: 1zpq_A
Probab=43.15 E-value=25 Score=29.27 Aligned_cols=36 Identities=11% Similarity=0.129 Sum_probs=29.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLVALEKLKHAARK 498 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~~ 498 (508)
...++..+|+.+||+.++|+++...-+.++...|..
T Consensus 22 a~~gq~~vA~~iGV~~StISR~k~~~~~~~~~lLa~ 57 (97)
T 1xwr_A 22 AMLGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLAV 57 (97)
T ss_dssp HHHCHHHHHHHHTCCTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHH
Confidence 347999999999999999999888776666665544
No 405
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=43.14 E-value=63 Score=28.06 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=31.6
Q ss_pred cCCHHHHHHHhHHhcc-CCCC---CCHHHHHHHHCCCHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGL-DKEC---LTWEDISKRIGLSRERVRQVG 485 (508)
Q Consensus 445 ~Lp~rER~VI~LryGL-d~eg---~TleEIAe~LgIS~erVrqi~ 485 (508)
.++++++.|...--|- |..| .+.+|||+.+|++...|....
T Consensus 16 ~~~~~~~~ia~~iI~~LD~~GYL~~~l~eia~~l~~~~~eve~vL 60 (130)
T 2k9m_A 16 ELEGKEQELALELLNYLNEKGFLSKSVEEISDVLRCSVEELEKVR 60 (130)
T ss_dssp HCCSHHHHHHHHHTTSBCTTSSBSSCHHHHHHHTTCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHcCCCHHHHHHHH
Confidence 5899999887765443 5455 689999999999999886543
No 406
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=43.02 E-value=1.4e+02 Score=25.55 Aligned_cols=64 Identities=19% Similarity=0.195 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHh
Q 010521 319 TYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (508)
Q Consensus 319 TYA~~wIR~~I~~~Ird~~R~irip~~~~~~l~kir~a~~~l~~~Gr~Pt~eEIA~~Lgis~e~v~~~l~~~ 390 (508)
.|....+.+.+.+.+........++......+..+. ..| ..+..+||+.+|++...+..++...
T Consensus 28 ~~~l~~~~~~~~~~~~~~~~~~glt~~q~~vL~~l~-------~~~-~~t~~eLa~~l~~~~~~vs~~l~~L 91 (161)
T 3e6m_A 28 PYLLTRITHIWSSELNQALASEKLPTPKLRLLSSLS-------AYG-ELTVGQLATLGVMEQSTTSRTVDQL 91 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH-------HHS-EEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH-------hCC-CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344444555555555444433344443333332222 223 4679999999999999999988776
No 407
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=42.87 E-value=83 Score=27.04 Aligned_cols=73 Identities=7% Similarity=-0.094 Sum_probs=55.4
Q ss_pred CCchHHHHHHhccChHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccC
Q 010521 238 EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKFD 310 (508)
Q Consensus 238 ~p~~~~~a~~~~~s~~~L~~~l~e~~~A~e~LIe~yl~LV~sIAkrY~~~g~d~EDLiQEG~IgLirAiekFD 310 (508)
..+.+++|+.+|++...+-+-....+.-+..++..+..-+............+..+.+...+-.++..+....
T Consensus 31 ~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 103 (204)
T 3eup_A 31 GTSLTDLTEATNLTKGSIYGNFENKEAVAIAAFDYNWGHVKSVLTAKVQACNTYKEMLLVYSSMYNDADGSLF 103 (204)
T ss_dssp HCCHHHHHHHHTCCHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHTCHHHHHHGGGGTTS
T ss_pred cCCHHHHHHHhCCCcHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhccC
Confidence 4688999999999999999998888888888888887777766666555556777777666666665555443
No 408
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=42.61 E-value=1.6e+02 Score=30.80 Aligned_cols=26 Identities=8% Similarity=0.422 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHh
Q 010521 365 VTPSVDRIAEYLNMSQKKVRNATEAI 390 (508)
Q Consensus 365 r~Pt~eEIA~~Lgis~e~v~~~l~~~ 390 (508)
..-|.+|||+.+|+|.++|+.++...
T Consensus 394 e~~TleEIAe~LgIS~erVRqi~~RA 419 (438)
T 1l9z_H 394 REHTLEEVGAYFGVTRERIRQIENKA 419 (438)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 56789999999999999999887654
No 409
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=42.55 E-value=11 Score=31.36 Aligned_cols=24 Identities=8% Similarity=0.166 Sum_probs=21.6
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 465 LTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 465 ~TleEIAe~LgIS~erVrqi~~rA 488 (508)
+|..|+|+.+|||..|++.+...+
T Consensus 3 ~~i~e~A~~~gvs~~tLR~ye~~G 26 (109)
T 1r8d_A 3 YQVKQVAEISGVSIRTLHHYDNIE 26 (109)
T ss_dssp BCHHHHHHHHSCCHHHHHHHHHTT
T ss_pred ccHHHHHHHHCcCHHHHHHHHHCC
Confidence 689999999999999999987754
No 410
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=42.16 E-value=25 Score=26.89 Aligned_cols=50 Identities=16% Similarity=0.148 Sum_probs=36.1
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+++.+..+|...|-.+ .......+||..+|++...|..+...-..|.|+
T Consensus 15 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 66 (75)
T 2m0c_A 15 TFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRK 66 (75)
T ss_dssp SSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHH
Confidence 35666666666666322 123457789999999999999999988777664
No 411
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=42.07 E-value=1.4e+02 Score=25.07 Aligned_cols=27 Identities=22% Similarity=0.297 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHhC
Q 010521 365 VTPSVDRIAEYLNMSQKKVRNATEAIG 391 (508)
Q Consensus 365 r~Pt~eEIA~~Lgis~e~v~~~l~~~~ 391 (508)
+-|+..+||+.+|++...|++++....
T Consensus 36 ~Lps~~~La~~~~vSr~tvr~Al~~L~ 62 (125)
T 3neu_A 36 KLPSVREMGVKLAVNPNTVSRAYQELE 62 (125)
T ss_dssp BCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 567899999999999999999988763
No 412
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=41.91 E-value=13 Score=28.43 Aligned_cols=49 Identities=10% Similarity=0.093 Sum_probs=35.6
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
.+++.|..+|...|-.+ -......+||..+|++...|..+...-..|.|
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 63 (70)
T 2djn_A 13 IYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIK 63 (70)
T ss_dssp SSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCS
T ss_pred CCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhc
Confidence 45677777887777322 11235779999999999999999987766544
No 413
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=41.85 E-value=19 Score=27.69 Aligned_cols=50 Identities=8% Similarity=0.023 Sum_probs=36.2
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
..++.|..+|...|-.+ ......++||..+|++...|+.+...-..|.|+
T Consensus 12 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 63 (74)
T 2ly9_A 12 KKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRN 63 (74)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHh
Confidence 45666666776666321 123457789999999999999999888777664
No 414
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=41.82 E-value=26 Score=27.97 Aligned_cols=50 Identities=16% Similarity=0.184 Sum_probs=37.2
Q ss_pred ccCCHHHHHHHhHHhccC-CCC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 444 VTLGEREREIIRLYYGLD-KEC----LTWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 444 ~~Lp~rER~VI~LryGLd-~eg----~TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
..+++.+..+|...|.-+ ..+ ....+||..+|++...|..+......|.|
T Consensus 32 ~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 32 HRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp CCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 467888888887777431 022 34678999999999999999988877654
No 415
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=41.76 E-value=51 Score=31.91 Aligned_cols=27 Identities=22% Similarity=0.143 Sum_probs=22.0
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 463 ECL-TWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 463 eg~-TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
+.+ |..|+|+.+|||+.||| +|+..|.
T Consensus 51 ~~lPse~~La~~~~vSr~tvr----~Al~~L~ 78 (272)
T 3eet_A 51 TRLPSQARIREEYGVSDTVAL----EARKVLM 78 (272)
T ss_dssp SBCCCHHHHHHHHTCCHHHHH----HHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHH----HHHHHHH
Confidence 456 99999999999999997 5555554
No 416
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=41.73 E-value=1.2e+02 Score=29.43 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
...|..+|++.|+||..||.+++.+
T Consensus 85 ~~~t~~~ia~~l~vs~~tV~r~L~~ 109 (345)
T 3hot_A 85 DAQTQKQLAEQLEVSQQAVSNRLRE 109 (345)
T ss_dssp SCCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred ccchHHHHHHHHCCCHHHHHHHHHH
Confidence 4689999999999999999988876
No 417
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=41.64 E-value=15 Score=27.73 Aligned_cols=49 Identities=24% Similarity=0.236 Sum_probs=35.4
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
.+++.|..+|...|.-+ -......+||..+|++...|..+...-..+.|
T Consensus 9 ~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 59 (66)
T 1bw5_A 9 VLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDK 59 (66)
T ss_dssp CCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCS
T ss_pred CCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHh
Confidence 45677777777777432 11234678999999999999999987766644
No 418
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=41.29 E-value=1.4e+02 Score=23.98 Aligned_cols=27 Identities=4% Similarity=-0.005 Sum_probs=22.5
Q ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010521 363 KGVTPSVDRIAEYLNMSQKKVRNATEA 389 (508)
Q Consensus 363 ~Gr~Pt~eEIA~~Lgis~e~v~~~l~~ 389 (508)
.+...++++||+.+|++...+......
T Consensus 18 ~~~~~~~~~lA~~~~~S~~~l~r~fk~ 44 (108)
T 3oou_A 18 FSEGMSLKTLGNDFHINAVYLGQLFQK 44 (108)
T ss_dssp TTSCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 355678999999999999999887654
No 419
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=41.24 E-value=16 Score=27.12 Aligned_cols=49 Identities=12% Similarity=0.058 Sum_probs=35.4
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
.+++.+..+|...|.-+ .......+||..+|++...|..+...-..|.|
T Consensus 9 ~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~k 59 (62)
T 2vi6_A 9 VFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCK 59 (62)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCG
T ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchh
Confidence 46777778887777432 11234678999999999999999877655544
No 420
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=41.10 E-value=23 Score=34.74 Aligned_cols=36 Identities=6% Similarity=-0.053 Sum_probs=29.3
Q ss_pred HHHHHhHHhccCCCCCCHHHHHHHHC-------CCHHHHHHHHHHH
Q 010521 450 EREIIRLYYGLDKECLTWEDISKRIG-------LSRERVRQVGLVA 488 (508)
Q Consensus 450 ER~VI~LryGLd~eg~TleEIAe~Lg-------IS~erVrqi~~rA 488 (508)
.|.+|.+.+ .+|.|..+||+.|+ +|+.||..+..+-
T Consensus 11 ~R~~i~~~~---~~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~ 53 (345)
T 3hot_A 11 TRTVLIFCF---HLKKTAAESHRMLVEAFGEQVPTVKTCERWFQRF 53 (345)
T ss_dssp HHHHHHHHH---HTTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHH---HcCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 455565666 68999999999987 9999999998763
No 421
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=40.98 E-value=59 Score=27.05 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
-++|+.+||+.||-...||-.-..+.-+.++
T Consensus 49 t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~ 79 (101)
T 3pvv_A 49 TDLSLPKIGQAFGRDHTTVMYAQRKILSEMA 79 (101)
T ss_dssp CCCCHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5799999999999999999755555444443
No 422
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=40.84 E-value=1.7e+02 Score=25.01 Aligned_cols=29 Identities=10% Similarity=0.117 Sum_probs=24.1
Q ss_pred HcCCCCCHHHHHHHhCCCHHHHHHHHHHh
Q 010521 362 EKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (508)
Q Consensus 362 ~~Gr~Pt~eEIA~~Lgis~e~v~~~l~~~ 390 (508)
..|...+..+||+.++++...+..++...
T Consensus 42 ~~~~~~~~~eLa~~l~~~~~tvs~~v~~L 70 (151)
T 4aik_A 42 RLPPEQSQIQLAKAIGIEQPSLVRTLDQL 70 (151)
T ss_dssp HSCTTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HcCCCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 34555677999999999999999988876
No 423
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=40.82 E-value=12 Score=29.38 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=21.4
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 010521 465 LTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 465 ~TleEIAe~LgIS~erVrqi~~r 487 (508)
+|..|+|+.+|||..|++.+..+
T Consensus 6 ~~i~e~A~~~gvs~~tlR~ye~~ 28 (81)
T 2jml_A 6 LRIRTIARMTGIREATLRAWERR 28 (81)
T ss_dssp EEHHHHHHTTSTTHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHh
Confidence 68999999999999999998876
No 424
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=40.62 E-value=56 Score=30.94 Aligned_cols=27 Identities=37% Similarity=0.469 Sum_probs=21.8
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 463 ECL-TWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 463 eg~-TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
+.+ |..|+|+.+|||+.||++ |+..|.
T Consensus 32 ~~lPse~~La~~~~vSr~tvr~----Al~~L~ 59 (243)
T 2wv0_A 32 MPLPSEREYAEQFGISRMTVRQ----ALSNLV 59 (243)
T ss_dssp CBCCCHHHHHHHHTCCHHHHHH----HHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHH----HHHHHH
Confidence 445 899999999999999974 555554
No 425
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=40.55 E-value=1.5e+02 Score=24.26 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=21.5
Q ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHH
Q 010521 364 GVTPSVDRIAEYLNMSQKKVRNATEA 389 (508)
Q Consensus 364 Gr~Pt~eEIA~~Lgis~e~v~~~l~~ 389 (508)
....++++||+.+|++...+......
T Consensus 21 ~~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 21 AHEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp TSCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 45678999999999999998876543
No 426
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=40.50 E-value=1.7e+02 Score=24.83 Aligned_cols=76 Identities=8% Similarity=-0.125 Sum_probs=57.1
Q ss_pred hhC-CCCchHHHHHHhccChHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhcc
Q 010521 234 RLG-CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309 (508)
Q Consensus 234 ~~g-~~p~~~~~a~~~~~s~~~L~~~l~e~~~A~e~LIe~yl~LV~sIAkrY~~~g~d~EDLiQEG~IgLirAiekF 309 (508)
..| ...+.+++|+.+|++...+-.--...++-+..++..+..-+............+..+.+...+-.++..+...
T Consensus 22 ~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 98 (199)
T 3qbm_A 22 VSGYAGTAISDIMAATGLEKGGIYRHFESKEQLALAAFDYAAEKVRERFAVGLAGHKHTVDTIIAFLDVFRSYAERP 98 (199)
T ss_dssp HHCSTTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHGGGTCC
T ss_pred HhCcCcCCHHHHHHHhCCCccHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHhhhC
Confidence 345 4579999999999999999999988888888888888877777666665555677777666655555544433
No 427
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=39.96 E-value=1.7e+02 Score=24.75 Aligned_cols=80 Identities=8% Similarity=0.015 Sum_probs=60.5
Q ss_pred hCC-CCchHHHHHHhccChHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhhhccCCC
Q 010521 235 LGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDN-MGADMADLVQGGLIGLLRGIEKFDSS 312 (508)
Q Consensus 235 ~g~-~p~~~~~a~~~~~s~~~L~~~l~e~~~A~e~LIe~yl~LV~sIAkrY~~-~g~d~EDLiQEG~IgLirAiekFDpe 312 (508)
.|. ..+.+++|+.+|+|...+-+--...++-+..++..+..-+......... .+.+..+-+...+..++..+....+.
T Consensus 26 ~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 105 (197)
T 3rd3_A 26 KGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLEDYFRVYLADMDQRFSAPGLNARERLMSYWQKWLDNACPPCDE 105 (197)
T ss_dssp HCSTTCCHHHHHHHHTCCHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHCCTTSSC
T ss_pred CCcccCCHHHHHHHhCCChhhHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhcCccc
Confidence 443 6899999999999999999988888888888888877777666666543 44678888887777777776665543
Q ss_pred CC
Q 010521 313 KG 314 (508)
Q Consensus 313 rG 314 (508)
.+
T Consensus 106 ~~ 107 (197)
T 3rd3_A 106 QR 107 (197)
T ss_dssp CC
T ss_pred cc
Confidence 33
No 428
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=39.87 E-value=19 Score=27.82 Aligned_cols=51 Identities=16% Similarity=-0.020 Sum_probs=36.8
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHA 495 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~ 495 (508)
.+++.|..+|...|..+ .......+||..+|++...|..+...-..|.|+.
T Consensus 13 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 65 (73)
T 2l7z_A 13 PYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKV 65 (73)
T ss_dssp CSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHH
Confidence 35666777777666322 1223567899999999999999998888777653
No 429
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=39.85 E-value=37 Score=34.36 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=29.2
Q ss_pred HHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 010521 451 REIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALE 490 (508)
Q Consensus 451 R~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALk 490 (508)
+.|+.+-+- ..+.|..|||+.+|+|+.||.++..+-++
T Consensus 19 ~~il~~l~~--~~~~sr~~la~~~~ls~~tv~~~v~~L~~ 56 (406)
T 1z6r_A 19 GAVYRLIDQ--LGPVSRIDLSRLAQLAPASITKIVHEMLE 56 (406)
T ss_dssp HHHHHHHHS--SCSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 446665441 35799999999999999999988766544
No 430
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=39.69 E-value=42 Score=28.67 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=28.0
Q ss_pred HHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 010521 451 REIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVAL 489 (508)
Q Consensus 451 R~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rAL 489 (508)
..++.++ .+|+|++|||..-|++..||-..+.+..
T Consensus 23 ~~t~~l~----~~G~sleeIA~~R~L~~~TI~~Hl~~~v 57 (122)
T 3iuo_A 23 VSIVQQI----DRKVALDDIAVSHGLDFPELLSEVETIV 57 (122)
T ss_dssp HHHHHHH----HTTCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHH----HcCCCHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3455554 4899999999999999999987776664
No 431
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=39.67 E-value=24 Score=28.77 Aligned_cols=50 Identities=10% Similarity=0.054 Sum_probs=38.0
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
.+++.|..+|...|-.+ -......+||..+|++...|+.+...-..|.|+
T Consensus 31 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk 82 (96)
T 3nar_A 31 KKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKN 82 (96)
T ss_dssp SSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhh
Confidence 56777777777776322 122456789999999999999999988887775
No 432
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=39.58 E-value=18 Score=32.38 Aligned_cols=22 Identities=0% Similarity=-0.031 Sum_probs=20.9
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q 010521 466 TWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 466 TleEIAe~LgIS~erVrqi~~r 487 (508)
|++|+|+.+|+|+++|++++..
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHS
T ss_pred CHHHHHHHhCcCHHHHHHHHhC
Confidence 9999999999999999999875
No 433
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=39.39 E-value=53 Score=29.88 Aligned_cols=31 Identities=26% Similarity=0.381 Sum_probs=26.7
Q ss_pred HHHcCCCCCHHHHHHHhCCCHHHHHHHHHHh
Q 010521 360 LEEKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (508)
Q Consensus 360 l~~~Gr~Pt~eEIA~~Lgis~e~v~~~l~~~ 390 (508)
+.+.|..|+..|||+.+|++...+...+...
T Consensus 18 ~~~~g~~~s~~eia~~lgl~~~tv~~~l~~L 48 (196)
T 3k2z_A 18 IEKNGYPPSVREIARRFRITPRGALLHLIAL 48 (196)
T ss_dssp HHHHSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHcCCCcHHHHHHHHHH
Confidence 3567899999999999999999888877765
No 434
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=39.22 E-value=26 Score=27.71 Aligned_cols=51 Identities=16% Similarity=0.205 Sum_probs=38.8
Q ss_pred cCCHHHHHHHhHHhccC-CCC----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD-KEC----LTWEDISKRIGLSRERVRQVGLVALEKLKHA 495 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd-~eg----~TleEIAe~LgIS~erVrqi~~rALkKLR~~ 495 (508)
.+++.+..+|...|.-+ ... ....+||..+|++...|..+......+.|+.
T Consensus 8 rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~ 63 (83)
T 1le8_B 8 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTI 63 (83)
T ss_dssp CCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccc
Confidence 46788888888777421 022 3467899999999999999999998887764
No 435
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=39.11 E-value=45 Score=26.78 Aligned_cols=49 Identities=14% Similarity=0.057 Sum_probs=34.0
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~L-----gIS~erVrqi~~rALkKLR 493 (508)
.|+++|..+|.+-.--.++..|.++|.+.+ ..+..+|...+.+-.+||.
T Consensus 28 ~Lt~~e~~lL~~L~~~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~ 81 (102)
T 3zq7_A 28 HLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNAVEHSHYLRIYMGHLRQKLE 81 (102)
T ss_dssp CCCHHHHHHHHHHHHTTTCEEEHHHHHHHHTSSSCSTTHHHHHHHHHHHHHHHC
T ss_pred EcCHHHHHHHHHHHHCCCeeECHHHHHHHhcCCCCCCccchHHHHHHHHHHHhh
Confidence 689999998877542123558999999988 3566677766666555554
No 436
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=39.10 E-value=52 Score=31.03 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=20.9
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 463 ECL-TWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 463 eg~-TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
+.+ |..|+|+.+|||+.||| +|+..|.
T Consensus 31 ~~lPse~~La~~~~vSr~tvr----~Al~~L~ 58 (236)
T 3edp_A 31 MLMPNETALQEIYSSSRTTIR----RAVDLLV 58 (236)
T ss_dssp C--CCHHHHHHHTTCCHHHHH----HHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHH----HHHHHHH
Confidence 455 89999999999999997 5555554
No 437
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=38.51 E-value=26 Score=33.21 Aligned_cols=28 Identities=21% Similarity=0.401 Sum_probs=22.3
Q ss_pred CCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 463 ECL-TWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 463 eg~-TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
+.+ |..|+|+.+|||+.|||+ |+..|..
T Consensus 27 ~~lPse~~La~~~~vSr~tvr~----Al~~L~~ 55 (239)
T 3bwg_A 27 DKLPVLETLMAQFEVSKSTITK----SLELLEQ 55 (239)
T ss_dssp CBCCCHHHHHHHTTCCHHHHHH----HHHHHHH
T ss_pred CCCcCHHHHHHHHCCCHHHHHH----HHHHHHH
Confidence 446 899999999999999974 6655543
No 438
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=38.42 E-value=26 Score=28.71 Aligned_cols=26 Identities=12% Similarity=0.298 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHH-CCCHHHHHHHHHH
Q 010521 462 KECLTWEDISKRI-GLSRERVRQVGLV 487 (508)
Q Consensus 462 ~eg~TleEIAe~L-gIS~erVrqi~~r 487 (508)
..++++.||++.+ |++..+|.+++.+
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~ 62 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKF 62 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHH
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHH
Confidence 3679999999999 5999999876554
No 439
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=38.36 E-value=74 Score=20.88 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=26.9
Q ss_pred ccCCCCHHHHHHHHHHHHcCCccchhHHHHHHhhCCCCchHHHHHHhccChHHHHHhhh
Q 010521 202 SEELLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILM 260 (508)
Q Consensus 202 ~~~lLt~~EE~eL~~~ik~Gd~l~~~~~~l~~~~g~~p~~~~~a~~~~~s~~~L~~~l~ 260 (508)
+.+.|++++-..++.....|. +..++|..+|++...+.+.+.
T Consensus 2 R~~~l~~~~~~~i~~~~~~g~-----------------s~~~IA~~lgis~~Tv~~~~~ 43 (51)
T 1tc3_C 2 RGSALSDTERAQLDVMKLLNV-----------------SLHEMSRKISRSRHCIRVYLK 43 (51)
T ss_dssp CSCCCCHHHHHHHHHHHHTTC-----------------CHHHHHHHHTCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHcCC-----------------CHHHHHHHHCcCHHHHHHHHh
Confidence 345667665555555555554 467888889988776655543
No 440
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=38.34 E-value=16 Score=28.89 Aligned_cols=49 Identities=12% Similarity=0.061 Sum_probs=35.1
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
.+++.|..+|...|..+ .......+||..+|++...|..+...-..|.|
T Consensus 28 ~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~k 78 (84)
T 2kt0_A 28 VFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSK 78 (84)
T ss_dssp CCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 46667777777766322 12234678999999999999999987766654
No 441
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=38.21 E-value=1.5e+02 Score=24.91 Aligned_cols=72 Identities=10% Similarity=0.013 Sum_probs=49.5
Q ss_pred hCC-CCchHHHHHHhccChHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhh
Q 010521 235 LGC-EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGI 306 (508)
Q Consensus 235 ~g~-~p~~~~~a~~~~~s~~~L~~~l~e~~~A~e~LIe~yl~LV~sIAkrY~~~g~d~EDLiQEG~IgLirAi 306 (508)
.|. ..+.+++|+.+|++...+-+--...++-+..++.....-+............+..|.+...+..++..+
T Consensus 24 ~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 96 (188)
T 3qkx_A 24 EGLNQLSMLKLAKEANVAAGTIYLYFKNKDELLEQFAHRVFSMFMATLEKDFDETKPFFEQYRQMWKNIWYFL 96 (188)
T ss_dssp SCSTTCCHHHHHHHHTCCHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHHH
T ss_pred cCcccCCHHHHHHHhCCCcchHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 443 488999999999999988888877777777777777666666555544444556665555554444433
No 442
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=37.91 E-value=53 Score=29.38 Aligned_cols=25 Identities=16% Similarity=0.087 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
...|.+|||+.+|+|+..|++++.+
T Consensus 43 ~~~s~~eIA~~~~i~~~~l~kil~~ 67 (159)
T 3lwf_A 43 GPISLRSIAQDKNLSEHYLEQLIGP 67 (159)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4689999999999999999766543
No 443
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=37.85 E-value=28 Score=30.30 Aligned_cols=27 Identities=22% Similarity=0.233 Sum_probs=22.9
Q ss_pred HhccCCCCCCHHHHHHHHCCCHHHHHHHH
Q 010521 457 YYGLDKECLTWEDISKRIGLSRERVRQVG 485 (508)
Q Consensus 457 ryGLd~eg~TleEIAe~LgIS~erVrqi~ 485 (508)
..| +++.|.++||+..|||+.++-...
T Consensus 22 ~~G--~~~~t~~~IA~~agvs~~tlY~~F 48 (192)
T 2zcm_A 22 EKG--YDGTTLDDISKSVNIKKASLYYHY 48 (192)
T ss_dssp HHC--TTTCCHHHHHHHTTCCHHHHHHHT
T ss_pred HcC--cccCCHHHHHHHhCCChHHHHHHC
Confidence 346 688999999999999999997643
No 444
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=37.41 E-value=1.4e+02 Score=25.28 Aligned_cols=71 Identities=14% Similarity=0.010 Sum_probs=52.2
Q ss_pred CCchHHHHHHhccChHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhc
Q 010521 238 EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308 (508)
Q Consensus 238 ~p~~~~~a~~~~~s~~~L~~~l~e~~~A~e~LIe~yl~LV~sIAkrY~~~g~d~EDLiQEG~IgLirAiek 308 (508)
..+.+++|+.+|++...+-.--...++-+..++..+..-+............+..+.+...+..++..+..
T Consensus 28 ~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 98 (195)
T 3pas_A 28 ATSVGKIAKAAGLSPATLYIYYEDKEQLLLATFYYVSDQVIDAALDSFSRGKDLREGLRRQWHTLFRIGLE 98 (195)
T ss_dssp HCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence 47899999999999999998888887888888887776666555554445566666666666555555544
No 445
>3vpr_A Transcriptional regulator, TETR family; all alpha, helix-turn-helix, transcriptional repressor, DNA protein; 2.27A {Thermus thermophilus}
Probab=37.34 E-value=33 Score=29.81 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVG 485 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~ 485 (508)
+++.|.++||+..|||+.++-...
T Consensus 21 ~~~~s~~~IA~~agvsk~t~Y~~F 44 (190)
T 3vpr_A 21 YEATSVQDLAQALGLSKAALYHHF 44 (190)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHc
Confidence 788999999999999999996654
No 446
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=37.26 E-value=31 Score=28.67 Aligned_cols=49 Identities=16% Similarity=0.097 Sum_probs=36.4
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRI-----GLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~L-----gIS~erVrqi~~rALkKLR 493 (508)
.|+++|..+|.+-.-=.+...|.++|.+.+ ..+..+|...+.+..+||.
T Consensus 28 ~Lt~~E~~lL~~L~~~~g~vvsre~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 81 (112)
T 2jzy_A 28 HLTGKEYVLLELLLQRTGEVLPRSLISSLVWNMNFDSDTNVIDVAVRRLRSKID 81 (112)
T ss_dssp CCCHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCCSSCSTTHHHHHHHHHHTTTT
T ss_pred ecCHHHHHHHHHHHHCCCceEcHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhc
Confidence 589999998877542124678999999998 4667788877777666663
No 447
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=37.16 E-value=34 Score=27.75 Aligned_cols=53 Identities=4% Similarity=0.028 Sum_probs=37.6
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKHAAR 497 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~~L~ 497 (508)
.+++.|..+|...|.-+ -......+||..+|++...|+.+...-..|.|+...
T Consensus 23 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 77 (93)
T 3a01_A 23 SFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTA 77 (93)
T ss_dssp CCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhH
Confidence 35556666666665321 122346789999999999999999988888887543
No 448
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=36.96 E-value=29 Score=29.89 Aligned_cols=29 Identities=17% Similarity=0.053 Sum_probs=0.0
Q ss_pred HhHHhccCCCCCCHHHHHHHHCCCHHHHHHH
Q 010521 454 IRLYYGLDKECLTWEDISKRIGLSRERVRQV 484 (508)
Q Consensus 454 I~LryGLd~eg~TleEIAe~LgIS~erVrqi 484 (508)
+....| +++.|.++||+..|||+.++-..
T Consensus 14 l~~~~G--~~~~ti~~Ia~~agvs~~t~Y~~ 42 (194)
T 3bqz_B 14 LFIKNG--YNATTTGEIVKLSESSKGNLYYH 42 (194)
T ss_dssp HHHHHT--TTTCCHHHHHHHTTCCHHHHHHH
T ss_pred HHHHcC--CccCCHHHHHHHhCCCchhHHHh
No 449
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=36.96 E-value=9.6 Score=28.57 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=33.9
Q ss_pred cCCHHHHHHHhHHh---ccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYY---GLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 445 ~Lp~rER~VI~Lry---GLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
.+++.+..+|...| ..+ -......+||..+|++...|..+......+.|
T Consensus 9 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~k 62 (64)
T 1du6_A 9 HMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYK 62 (64)
T ss_dssp SSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSS
T ss_pred cCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhc
Confidence 35666777777766 221 11234678999999999999999887765543
No 450
>2oa4_A SIR5; structure, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Silicibacter pomeroyi} SCOP: a.4.12.3
Probab=36.76 E-value=30 Score=29.08 Aligned_cols=33 Identities=18% Similarity=0.159 Sum_probs=27.8
Q ss_pred HHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 453 IIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 453 VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
||.... ...+|..|.|+.+|||.++|.++....
T Consensus 42 VV~~v~---~g~lS~~EAa~ry~Is~~ei~~W~r~y 74 (101)
T 2oa4_A 42 VVRGVI---YGLITLAEAKQTYGLSDEEFNSWVSAL 74 (101)
T ss_dssp HHHHHH---HTTCCHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HHHHHH---hCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 555554 467999999999999999999998775
No 451
>1eto_A FIS, factor for inversion stimulation; transcriptional activation region, DNA-binding protein, transcription activator; 1.90A {Escherichia coli} SCOP: a.4.1.12 PDB: 1etq_A 1ety_A 1fia_A 3fis_A 3iv5_A* 3jr9_A* 3jra_A* 3jrb_A* 3jrc_A* 3jrd_A* 3jre_A* 3jrf_A* 3jrg_A* 3jrh_A* 3jri_A* 1f36_A 1etv_A 1etk_A 1etx_A 1fip_A ...
Probab=36.69 E-value=31 Score=28.56 Aligned_cols=36 Identities=11% Similarity=0.099 Sum_probs=23.9
Q ss_pred HHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 010521 449 REREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGL 486 (508)
Q Consensus 449 rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~ 486 (508)
-|+.+|...+- ..+-+..+.|+.||||+.|+...+.
T Consensus 58 ~Er~~I~~aL~--~~~gn~~~AA~~LGIsR~TL~rkLk 93 (98)
T 1eto_A 58 VEQPLLDMVMQ--YTLGNQTRAALMMGINRGTLRKKLK 93 (98)
T ss_dssp HHHHHHHHHHH--HTTTCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHH--HhCCCHHHHHHHhCCCHHHHHHHHH
Confidence 35555544331 1245788999999999999975543
No 452
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=36.50 E-value=2.1e+02 Score=24.68 Aligned_cols=71 Identities=13% Similarity=0.102 Sum_probs=53.5
Q ss_pred CCchHHHHHHhccChHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhc
Q 010521 238 EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308 (508)
Q Consensus 238 ~p~~~~~a~~~~~s~~~L~~~l~e~~~A~e~LIe~yl~LV~sIAkrY~~~g~d~EDLiQEG~IgLirAiek 308 (508)
..+.+++|+.+|++...+-.-....++-+..++..+..-+............+..+-+...+..++..+..
T Consensus 51 ~~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 121 (218)
T 3dcf_A 51 ATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNSIVDEALERFHAIAAGPGSPGERIHALLVEHTRTILR 121 (218)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHc
Confidence 57899999999999999998888877888888887777776666665555566666666666666655544
No 453
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=36.45 E-value=33 Score=29.51 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=22.1
Q ss_pred CCCCCHHHHHHHH-CCCHHHHHHHHHH
Q 010521 462 KECLTWEDISKRI-GLSRERVRQVGLV 487 (508)
Q Consensus 462 ~eg~TleEIAe~L-gIS~erVrqi~~r 487 (508)
..++++.||++.+ ||+..+|.+++.+
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~ 72 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQA 72 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHH
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHH
Confidence 3579999999999 7999999876654
No 454
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=36.27 E-value=33 Score=35.31 Aligned_cols=43 Identities=12% Similarity=0.032 Sum_probs=34.1
Q ss_pred cCCHHHHHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
.|+..|-.||..-+.-..+++|..|||+.++++..+|..++.|
T Consensus 401 ~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~~~~~~~~t~~~~~ 443 (487)
T 1hsj_A 401 NLNYEEIYILNHILRSESNEISSKEIAKCSEFKPYYLTKALQK 443 (487)
T ss_dssp CCCHHHHHHHHHHHTCSCSEEEHHHHHHSSCCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhCCCCCcCHHHHHHHHCCCHHHHHHHHHH
Confidence 5999999888776521115799999999999999999766655
No 455
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=36.21 E-value=1.8e+02 Score=23.80 Aligned_cols=64 Identities=5% Similarity=-0.016 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHhCCCHHHHHHHHHHh
Q 010521 320 YVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKG-VTPSVDRIAEYLNMSQKKVRNATEAI 390 (508)
Q Consensus 320 YA~~wIR~~I~~~Ird~~R~irip~~~~~~l~kir~a~~~l~~~G-r~Pt~eEIA~~Lgis~e~v~~~l~~~ 390 (508)
|....+...+.+.+........++......+.. +...+ ...+..+||+.+|++...+..++...
T Consensus 10 ~~l~~~~~~~~~~~~~~~~~~~lt~~~~~iL~~-------l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~L 74 (141)
T 3bro_A 10 RLLKIASNQMSTRFDIFAKKYDLTGTQMTIIDY-------LSRNKNKEVLQRDLESEFSIKSSTATVLLQRM 74 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH-------HHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH-------HHHCCCCCcCHHHHHHHHCCCcchHHHHHHHH
Confidence 444455555555554444333444333322222 22233 25689999999999999999988876
No 456
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=35.76 E-value=33 Score=29.96 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=23.2
Q ss_pred HhccCCCCCCHHHHHHHHCCCHHHHHHHH
Q 010521 457 YYGLDKECLTWEDISKRIGLSRERVRQVG 485 (508)
Q Consensus 457 ryGLd~eg~TleEIAe~LgIS~erVrqi~ 485 (508)
..| +++.|..+||+..|||+.|+-...
T Consensus 27 e~G--~~~~t~~~IA~~agvsk~tlY~~F 53 (192)
T 2fq4_A 27 ESG--FKAVTVDKIAERAKVSKATIYKWW 53 (192)
T ss_dssp HHC--TTTCCHHHHHHHHTCCHHHHHHHC
T ss_pred HcC--cccccHHHHHHHcCCCHHHHHHHC
Confidence 346 789999999999999999997664
No 457
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=35.74 E-value=1.8e+02 Score=24.63 Aligned_cols=60 Identities=13% Similarity=0.113 Sum_probs=45.2
Q ss_pred CCCchHHHHHHhccChHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 010521 237 CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQ 296 (508)
Q Consensus 237 ~~p~~~~~a~~~~~s~~~L~~~l~e~~~A~e~LIe~yl~LV~sIAkrY~~~g~d~EDLiQ 296 (508)
...+.+++|+.+|++...+-.-....++-+..++..+..-+............+..+.+.
T Consensus 31 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 90 (190)
T 2v57_A 31 PTAALGDIAAAAGVGRSTVHRYYPERTDLLRALARHVHDLSNAAIERADPTSGPVDAALR 90 (190)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHCTTSSCHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 567899999999999999998888887888888888777766665555444445554443
No 458
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=35.54 E-value=45 Score=25.17 Aligned_cols=29 Identities=7% Similarity=0.176 Sum_probs=23.9
Q ss_pred HcCCCCCHHHHHHHhCCCHHHHHHHHHHh
Q 010521 362 EKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (508)
Q Consensus 362 ~~Gr~Pt~eEIA~~Lgis~e~v~~~l~~~ 390 (508)
+.+..-+..|||+.+|+|...|...+...
T Consensus 21 ~~~~~~s~~eLA~~lglsr~tv~~~l~~L 49 (67)
T 2heo_A 21 DDGGPVAIFQLVKKCQVPKKTLNQVLYRL 49 (67)
T ss_dssp HHCSCEEHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HcCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 34445579999999999999999988765
No 459
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=35.54 E-value=34 Score=29.93 Aligned_cols=24 Identities=13% Similarity=0.058 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVG 485 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~ 485 (508)
+++.|.++||+..|||+.++-...
T Consensus 32 ~~~~ti~~IA~~agvs~~t~Y~~F 55 (212)
T 3knw_A 32 FVGVGLQEILKTSGVPKGSFYHYF 55 (212)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHC
T ss_pred CccCCHHHHHHHhCCChHHHHHHC
Confidence 688999999999999999997653
No 460
>2eh3_A Transcriptional regulator; all alpha proteins, tetracyclin repressor-like, C-terminal D homeodomain-like, DNA/RNA-binding 3-helical bundle; 1.55A {Aquifex aeolicus}
Probab=35.38 E-value=35 Score=29.36 Aligned_cols=24 Identities=25% Similarity=0.113 Sum_probs=21.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVG 485 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~ 485 (508)
+++.|..+||+..|||++++-...
T Consensus 20 y~~~s~~~Ia~~agvskgtlY~~F 43 (179)
T 2eh3_A 20 YQGTSVEEIVKRANLSKGAFYFHF 43 (179)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHC
T ss_pred CccCCHHHHHHHhCCCcHHHHHHc
Confidence 789999999999999999996653
No 461
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=35.25 E-value=43 Score=25.32 Aligned_cols=42 Identities=14% Similarity=0.225 Sum_probs=28.6
Q ss_pred HHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 010521 448 EREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVAL 489 (508)
Q Consensus 448 ~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rAL 489 (508)
+.|..+|...|-.+ -......+||..+|++...|+.+...-.
T Consensus 12 ~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRR 55 (64)
T 2e19_A 12 KNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQ 55 (64)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhccc
Confidence 44555666666322 1223577899999999999999985543
No 462
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=35.25 E-value=1.7e+02 Score=25.00 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHh
Q 010521 318 STYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (508)
Q Consensus 318 sTYA~~wIR~~I~~~Ird~~R~irip~~~~~~l~kir~a~~~l~~~Gr~Pt~eEIA~~Lgis~e~v~~~l~~~ 390 (508)
..|..+.+...+.+.+........++......+..+. ..| ..+..+||+.+|++...+..++...
T Consensus 20 l~~~l~~~~~~~~~~~~~~l~~~glt~~q~~iL~~l~-------~~~-~~t~~eLa~~l~~~~~tvs~~l~~L 84 (162)
T 3k0l_A 20 LSYMIARVDRIISKYLTEHLSALEISLPQFTALSVLA-------AKP-NLSNAKLAERSFIKPQSANKILQDL 84 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH-------HCT-TCCHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHH-------HCC-CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 3455666666666666655444445544333332222 233 5689999999999999999888776
No 463
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=35.22 E-value=2e+02 Score=24.17 Aligned_cols=72 Identities=11% Similarity=-0.025 Sum_probs=56.4
Q ss_pred CCCchHHHHHHhccChHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhc
Q 010521 237 CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308 (508)
Q Consensus 237 ~~p~~~~~a~~~~~s~~~L~~~l~e~~~A~e~LIe~yl~LV~sIAkrY~~~g~d~EDLiQEG~IgLirAiek 308 (508)
...+.+++|+.+|++...+-.--...++-+..++..+...+............+..+.+...+..++..+..
T Consensus 28 ~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 99 (195)
T 3ppb_A 28 HGTSTATIAREAGVATGTLFHHFPSKEQLLEQLFLGVKQEFADAIQASVSSRGDLKQDAEQLWFAALTWAMA 99 (195)
T ss_dssp TTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHHHHHhhc
Confidence 467899999999999999999888888888888888888877777666666667777777666666554443
No 464
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=35.14 E-value=36 Score=28.23 Aligned_cols=25 Identities=20% Similarity=0.205 Sum_probs=20.7
Q ss_pred CCCC--HHHHHHHH-CCCHHHHHHHHHH
Q 010521 463 ECLT--WEDISKRI-GLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~T--leEIAe~L-gIS~erVrqi~~r 487 (508)
.+++ +.||++.+ |+|+.++.+.+.+
T Consensus 39 g~~~~~~~eL~~~l~gis~~~ls~~L~~ 66 (111)
T 3df8_A 39 GSTRQNFNDIRSSIPGISSTILSRRIKD 66 (111)
T ss_dssp SSSCBCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHccCCCHHHHHHHHHH
Confidence 4566 99999999 9999999876554
No 465
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=34.82 E-value=35 Score=29.65 Aligned_cols=27 Identities=11% Similarity=-0.128 Sum_probs=22.9
Q ss_pred HhccCCCCCCHHHHHHHHCCCHHHHHHHH
Q 010521 457 YYGLDKECLTWEDISKRIGLSRERVRQVG 485 (508)
Q Consensus 457 ryGLd~eg~TleEIAe~LgIS~erVrqi~ 485 (508)
..| +++.|..+||+..|||+.++-...
T Consensus 27 ~~G--~~~~t~~~Ia~~agvs~~t~Y~~F 53 (202)
T 3lwj_A 27 EKG--YYNTSIRDIIALSEVGTGTFYNYF 53 (202)
T ss_dssp HHC--TTTCCHHHHHHHHCSCHHHHHHHC
T ss_pred HcC--cccCCHHHHHHHhCCCchhHHHHc
Confidence 346 678999999999999999997643
No 466
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=34.68 E-value=35 Score=29.09 Aligned_cols=23 Identities=9% Similarity=0.083 Sum_probs=20.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQV 484 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi 484 (508)
+++.|..+||+..|||+.++-..
T Consensus 26 ~~~~ti~~Ia~~agvs~~t~Y~~ 48 (188)
T 3qkx_A 26 LNQLSMLKLAKEANVAAGTIYLY 48 (188)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHH
T ss_pred cccCCHHHHHHHhCCCcchHHHH
Confidence 67899999999999999998754
No 467
>3kkc_A TETR family transcriptional regulator; APC20805, structural genomics, PSI-2, protein structure initiative; 2.50A {Streptococcus agalactiae 2603V}
Probab=34.52 E-value=26 Score=29.90 Aligned_cols=23 Identities=13% Similarity=0.081 Sum_probs=20.4
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQV 484 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi 484 (508)
+++.|..+||+..|||++++-..
T Consensus 30 ~~~~tv~~Ia~~agvs~~t~Y~~ 52 (177)
T 3kkc_A 30 YSKITVQDVIGLANVGRSTFYSH 52 (177)
T ss_dssp TTTCCHHHHHHHHCCCHHHHTTT
T ss_pred hhHhhHHHHHHHhCCcHhhHHHH
Confidence 67899999999999999998653
No 468
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=34.46 E-value=45 Score=29.06 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
...|.+|||+.+|+|+..|++++.+
T Consensus 27 ~~~s~~~IA~~~~i~~~~l~kil~~ 51 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLYLEQLVGP 51 (143)
T ss_dssp CCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 3589999999999999999766543
No 469
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=34.41 E-value=31 Score=29.98 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.0
Q ss_pred HhccCCCCCCHHHHHHHHCCCHHHHHHH
Q 010521 457 YYGLDKECLTWEDISKRIGLSRERVRQV 484 (508)
Q Consensus 457 ryGLd~eg~TleEIAe~LgIS~erVrqi 484 (508)
..| +++.|.++||+..|||+.++-..
T Consensus 26 ~~G--~~~~s~~~Ia~~agvs~~t~Y~~ 51 (203)
T 3b81_A 26 ANG--YENTTLAFIINKLGISKGALYHY 51 (203)
T ss_dssp HHC--STTCCHHHHHHHHTCCHHHHHTT
T ss_pred HcC--cccCcHHHHHHHhCCCchhHHHH
Confidence 346 67899999999999999998653
No 470
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=34.37 E-value=40 Score=29.43 Aligned_cols=30 Identities=20% Similarity=0.071 Sum_probs=0.0
Q ss_pred HhHHhccCCCCCCHHHHHHHHCCCHHHHHHHH
Q 010521 454 IRLYYGLDKECLTWEDISKRIGLSRERVRQVG 485 (508)
Q Consensus 454 I~LryGLd~eg~TleEIAe~LgIS~erVrqi~ 485 (508)
+....| +++.|..+||+..|||+.++-...
T Consensus 28 lf~~~G--~~~~t~~~Ia~~agvs~~t~Y~~F 57 (213)
T 2qtq_A 28 IMREGD--VVDISLSELSLRSGLNSALVKYYF 57 (213)
T ss_dssp HHHHHT--SSCCCHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHcC--cccccHHHHHHHhCCChhhHhHhc
No 471
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=34.23 E-value=2.1e+02 Score=24.07 Aligned_cols=25 Identities=16% Similarity=0.246 Sum_probs=22.4
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHh
Q 010521 366 TPSVDRIAEYLNMSQKKVRNATEAI 390 (508)
Q Consensus 366 ~Pt~eEIA~~Lgis~e~v~~~l~~~ 390 (508)
..+..+||+.+|++...+..++...
T Consensus 63 ~~t~~ela~~l~is~~tvs~~l~~L 87 (162)
T 2fa5_A 63 GSSASEVSDRTAMDKVAVSRAVARL 87 (162)
T ss_dssp TCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5689999999999999999988766
No 472
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=34.19 E-value=37 Score=28.93 Aligned_cols=26 Identities=23% Similarity=0.233 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHh
Q 010521 365 VTPSVDRIAEYLNMSQKKVRNATEAI 390 (508)
Q Consensus 365 r~Pt~eEIA~~Lgis~e~v~~~l~~~ 390 (508)
+-|+..+||+.+|++...|++++...
T Consensus 34 ~lPse~~La~~~~vSr~tvr~Al~~L 59 (126)
T 3by6_A 34 QLPSVRETALQEKINPNTVAKAYKEL 59 (126)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 45799999999999999999998876
No 473
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=34.10 E-value=58 Score=28.35 Aligned_cols=25 Identities=8% Similarity=0.068 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLV 487 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~r 487 (508)
+..|.+|||+.+|+|+..|++++..
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~ 53 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSY 53 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4689999999999999999766543
No 474
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=34.08 E-value=41 Score=25.35 Aligned_cols=26 Identities=8% Similarity=0.422 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHh
Q 010521 365 VTPSVDRIAEYLNMSQKKVRNATEAI 390 (508)
Q Consensus 365 r~Pt~eEIA~~Lgis~e~v~~~l~~~ 390 (508)
..-+..|||+.+|+|...|...+...
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra 54 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKA 54 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 56789999999999999999876654
No 475
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=34.07 E-value=14 Score=36.89 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=32.6
Q ss_pred CCCHHHHHHHHHHHHcCCccchhHHHHHHhhCCCCchHHHHHHhccChHHHHHhhhhhHHHHHHHHHHHHHH
Q 010521 205 LLTHAEVVRLSKKIKTGLSLDDHKLRLKERLGCEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRL 276 (508)
Q Consensus 205 lLt~~EE~eL~~~ik~Gd~l~~~~~~l~~~~g~~p~~~~~a~~~~~s~~~L~~~l~e~~~A~e~LIe~yl~L 276 (508)
|||.+.|++++++|..|.. ++...+.+++-+.+.|+..|-++
T Consensus 1 LLTREgEI~IAKRIE~G~~------------------------------~v~~ai~~~P~~i~~il~~~~~l 42 (339)
T 1sig_A 1 GSHMEGEIDIAKRIEDGIN------------------------------QVQCSVAEYPEAITYLLEQYNRV 42 (339)
T ss_dssp ---CCTHHHHHHHHHHHHH------------------------------HHHHHHTTCHHHHHHHHHHHTTT
T ss_pred CCChHHHHHHHHHHHHHHH------------------------------HHHHHHHhChHHHHHHHHHHHHH
Confidence 6999999999999999997 56677777778888888877654
No 476
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=34.06 E-value=30 Score=29.87 Aligned_cols=24 Identities=8% Similarity=-0.021 Sum_probs=21.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVG 485 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~ 485 (508)
+++.|.++||+..|||++++-...
T Consensus 26 ~~~~t~~~Ia~~agvs~~t~Y~~F 49 (206)
T 3dew_A 26 FYGVSIRELAQAAGASISMISYHF 49 (206)
T ss_dssp GGGCCHHHHHHHHTCCHHHHHHHS
T ss_pred cccCcHHHHHHHhCCCHHHHHHHc
Confidence 678999999999999999998765
No 477
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=34.01 E-value=3.1e+02 Score=25.96 Aligned_cols=45 Identities=11% Similarity=0.265 Sum_probs=31.2
Q ss_pred HHHHHHHHHcCCCC-CHHHHHHHhCCCHHHHHHHHHHh---Cccccccc
Q 010521 354 RNAKLRLEEKGVTP-SVDRIAEYLNMSQKKVRNATEAI---GKVFSLDR 398 (508)
Q Consensus 354 r~a~~~l~~~Gr~P-t~eEIA~~Lgis~e~v~~~l~~~---~~~~SLD~ 398 (508)
.+....+.+.|..| ...+|++.+|++...+.+++... +..+.++.
T Consensus 144 ~~i~~~~~~~g~~pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~ 192 (258)
T 1lva_A 144 KDLEDKYRVSRWQPPSFKEVAGSFNLDPSELEELLHYLVREGVLVKIND 192 (258)
T ss_dssp HHHHHHHHHHTTSCCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSS
T ss_pred HHHHHHHHHCCCCCCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEecC
Confidence 33444455667655 79999999999999988877654 34454443
No 478
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=33.80 E-value=48 Score=26.85 Aligned_cols=53 Identities=13% Similarity=0.150 Sum_probs=39.4
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHC---------------CCHHHHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIG---------------LSRERVRQVGLVALEKLKHAAR 497 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~Lg---------------IS~erVrqi~~rALkKLR~~L~ 497 (508)
.+++.|..+|.-.|.-+ -.....++||+.+| ++...|..+...-..+.|+...
T Consensus 13 ~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 13 TWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 35667777777776322 11234778999999 9999999999998888887654
No 479
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=33.65 E-value=40 Score=29.88 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=0.0
Q ss_pred HhHHhccCCCCCCHHHHHHHHCCCHHHHHHHH
Q 010521 454 IRLYYGLDKECLTWEDISKRIGLSRERVRQVG 485 (508)
Q Consensus 454 I~LryGLd~eg~TleEIAe~LgIS~erVrqi~ 485 (508)
+....| +++.|.++||+..|||+.++-...
T Consensus 24 lf~~~G--~~~ts~~~IA~~aGvsk~tlY~~F 53 (211)
T 3bhq_A 24 AFISKG--YDGTSMEEIATKAGASKQTVYKHF 53 (211)
T ss_dssp HHHHHC--STTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHhC--cccCCHHHHHHHhCCCHHHHHHHc
No 480
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=33.58 E-value=1.4e+02 Score=25.80 Aligned_cols=71 Identities=15% Similarity=-0.013 Sum_probs=49.2
Q ss_pred CCCchHHHHHHhccChHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhh
Q 010521 237 CEPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIE 307 (508)
Q Consensus 237 ~~p~~~~~a~~~~~s~~~L~~~l~e~~~A~e~LIe~yl~LV~sIAkrY~~~g~d~EDLiQEG~IgLirAie 307 (508)
...+.+++|+.+|++...+-.--...++-+..++..+..-+............+..+.+...+..++....
T Consensus 44 ~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 114 (212)
T 3nxc_A 44 QRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLGFGE 114 (212)
T ss_dssp --CCHHHHHHHTTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHH
T ss_pred hhcCHHHHHHHhCCChhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 46899999999999999998888888787888887777666665555444444566655555555544433
No 481
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=33.41 E-value=38 Score=27.60 Aligned_cols=50 Identities=4% Similarity=-0.063 Sum_probs=36.6
Q ss_pred cCCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 010521 445 TLGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLKH 494 (508)
Q Consensus 445 ~Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR~ 494 (508)
..+..|..+|...|..+ .......+||..+|++...|+.+...-..|.|+
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk 68 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKAL 68 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHH
Confidence 45566666666665332 234567899999999999999999988777664
No 482
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=33.41 E-value=47 Score=28.65 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=0.0
Q ss_pred HHHHHHHhHHhcc----CCCCCCHHHHHHHHCCCHHHHHHH
Q 010521 448 EREREIIRLYYGL----DKECLTWEDISKRIGLSRERVRQV 484 (508)
Q Consensus 448 ~rER~VI~LryGL----d~eg~TleEIAe~LgIS~erVrqi 484 (508)
.+.+.|+.--..+ ++++.|.++||+..|||+.++-+.
T Consensus 8 ~~r~~Il~aA~~l~~~~G~~~~t~~~IA~~Agvs~~tly~~ 48 (194)
T 3dpj_A 8 QTRDQIVAAADELFYRQGFAQTSFVDISAAVGISRGNFYYH 48 (194)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHHH
No 483
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=33.31 E-value=2.2e+02 Score=24.03 Aligned_cols=64 Identities=6% Similarity=0.027 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHh
Q 010521 319 TYVYWWIRQGVSRALVENSRTLRLPNHLHERLGLIRNAKLRLEEKGVTPSVDRIAEYLNMSQKKVRNATEAI 390 (508)
Q Consensus 319 TYA~~wIR~~I~~~Ird~~R~irip~~~~~~l~kir~a~~~l~~~Gr~Pt~eEIA~~Lgis~e~v~~~l~~~ 390 (508)
.|....+.+.+.+.+........++......+..+.. ....+..+||+.++++...+..++...
T Consensus 25 ~~~l~~~~~~~~~~~~~~l~~~~lt~~q~~vL~~l~~--------~~~~t~~eLa~~l~~~~~tvs~~l~~L 88 (159)
T 3s2w_A 25 GKAISYLYRYGQIYIGKKIEPYGIGSGQFPFLMRLYR--------EDGINQESLSDYLKIDKGTTARAIQKL 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHGGGTCCTTTHHHHHHHHH--------SCSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH--------CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 4555566666666666665555565554444433321 234578999999999999999988776
No 484
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=33.20 E-value=32 Score=30.37 Aligned_cols=26 Identities=31% Similarity=0.314 Sum_probs=0.0
Q ss_pred HhHHhccCCCCCCHHHHHHHHCCCHHHH
Q 010521 454 IRLYYGLDKECLTWEDISKRIGLSRERV 481 (508)
Q Consensus 454 I~LryGLd~eg~TleEIAe~LgIS~erV 481 (508)
+....| +++.|..+||+..|||++++
T Consensus 24 lf~~~G--y~~ts~~~IA~~agvs~gtl 49 (205)
T 1rkt_A 24 VFKRKG--FELTTMKDVVEESGFSRGGV 49 (205)
T ss_dssp HHHHHC--STTCCHHHHHHHHTSCHHHH
T ss_pred HHHHcC--cccCCHHHHHHHHCCCcchh
No 485
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=32.94 E-value=33 Score=29.39 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=22.7
Q ss_pred HhccCCCCCCHHHHHHHHCCCHHHHHHHH
Q 010521 457 YYGLDKECLTWEDISKRIGLSRERVRQVG 485 (508)
Q Consensus 457 ryGLd~eg~TleEIAe~LgIS~erVrqi~ 485 (508)
..| +++.|..+||+..|||++++-...
T Consensus 25 ~~G--~~~~t~~~IA~~agvs~~t~Y~~F 51 (191)
T 3on4_A 25 KDG--YNAFSFKDIATAINIKTASIHYHF 51 (191)
T ss_dssp HHC--GGGCCHHHHHHHHTCCHHHHHHHC
T ss_pred HhC--cccCCHHHHHHHhCCCcchhhhcC
Confidence 346 678999999999999999987653
No 486
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=32.87 E-value=23 Score=27.50 Aligned_cols=48 Identities=10% Similarity=0.035 Sum_probs=33.1
Q ss_pred CCHHHHHHHhHHhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 010521 446 LGEREREIIRLYYGLD--KECLTWEDISKRIGLSRERVRQVGLVALEKLK 493 (508)
Q Consensus 446 Lp~rER~VI~LryGLd--~eg~TleEIAe~LgIS~erVrqi~~rALkKLR 493 (508)
+++.+..+|...|.-+ -......+||..+|++...|+.+...-..|.|
T Consensus 11 ~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~k 60 (69)
T 2l9r_A 11 MSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTK 60 (69)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhh
Confidence 4555666666655321 12235678999999999999999877666654
No 487
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=32.83 E-value=34 Score=29.50 Aligned_cols=23 Identities=17% Similarity=0.173 Sum_probs=20.7
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQV 484 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi 484 (508)
+++.|.++||+..|||+.++-..
T Consensus 25 ~~~~t~~~IA~~agvs~~t~Y~~ 47 (199)
T 3qbm_A 25 YAGTAISDIMAATGLEKGGIYRH 47 (199)
T ss_dssp STTCCHHHHHHHHTCCHHHHHTT
T ss_pred cCcCCHHHHHHHhCCCccHHHHh
Confidence 68899999999999999998653
No 488
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=32.78 E-value=1.6e+02 Score=26.03 Aligned_cols=71 Identities=10% Similarity=0.062 Sum_probs=55.5
Q ss_pred CCchHHHHHHhccChHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhc
Q 010521 238 EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEK 308 (508)
Q Consensus 238 ~p~~~~~a~~~~~s~~~L~~~l~e~~~A~e~LIe~yl~LV~sIAkrY~~~g~d~EDLiQEG~IgLirAiek 308 (508)
..+.+++|+++|++...+-.-....++-+..++..+..-+............+..+.+...+-.++..+..
T Consensus 55 ~~t~~~IA~~AGvs~~tlY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 125 (221)
T 3g7r_A 55 SVGIDRITAEAQVTRATLYRHFSGKDDLILAYLDQADRGIRAQVTAARGSSPAADGQVRAVARSIVDGIRS 125 (221)
T ss_dssp TSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTS
T ss_pred cCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Confidence 47899999999999999999998888888888888777776666655555567777777777676666653
No 489
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=32.77 E-value=71 Score=26.86 Aligned_cols=26 Identities=12% Similarity=0.170 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Q 010521 463 ECLTWEDISKRIGLSRERVRQVGLVA 488 (508)
Q Consensus 463 eg~TleEIAe~LgIS~erVrqi~~rA 488 (508)
++.|+++||+.+|+|+.+..+...+.
T Consensus 92 ~~~sl~~lA~~~g~S~~~f~r~Fk~~ 117 (133)
T 1u8b_A 92 TPVTLEALADQVAMSPFHLHRLFKAT 117 (133)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 67999999999999998888777654
No 490
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=32.72 E-value=40 Score=29.40 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=0.0
Q ss_pred HhHHhccCCCCCCHHHHHHHHCCCHHHHHHH
Q 010521 454 IRLYYGLDKECLTWEDISKRIGLSRERVRQV 484 (508)
Q Consensus 454 I~LryGLd~eg~TleEIAe~LgIS~erVrqi 484 (508)
+....| +++.|..+||+..|||++++-..
T Consensus 26 l~~~~G--~~~~ti~~Ia~~agvs~~t~Y~~ 54 (220)
T 3lhq_A 26 LFSQQG--VSATSLAEIANAAGVTRGAIYWH 54 (220)
T ss_dssp HHHHHC--STTCCHHHHHHHHTCCHHHHHHH
T ss_pred HHHHcC--cccCCHHHHHHHhCCCceeehhh
No 491
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=32.70 E-value=2.1e+02 Score=23.98 Aligned_cols=63 Identities=8% Similarity=0.043 Sum_probs=49.7
Q ss_pred CCchHHHHHHhccChHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHH
Q 010521 238 EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLVMSIAQRYDNMG-ADMADLVQGGLI 300 (508)
Q Consensus 238 ~p~~~~~a~~~~~s~~~L~~~l~e~~~A~e~LIe~yl~LV~sIAkrY~~~g-~d~EDLiQEG~I 300 (508)
..+.+++|+++|++...+-+--...++-+..++..+..-+..........+ .+..+.+...+-
T Consensus 30 ~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 93 (191)
T 3on4_A 30 AFSFKDIATAINIKTASIHYHFPSKEDLGVAVISWHTDKIAAVLSDISNNSSLSAKEKIQKFFD 93 (191)
T ss_dssp GCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCcchhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCHHHHHHHHHH
Confidence 489999999999999999999998888888888888877777776666555 566665554444
No 492
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=32.69 E-value=2.2e+02 Score=24.01 Aligned_cols=25 Identities=8% Similarity=0.215 Sum_probs=22.3
Q ss_pred CCCHHHHHHHhCCCHHHHHHHHHHh
Q 010521 366 TPSVDRIAEYLNMSQKKVRNATEAI 390 (508)
Q Consensus 366 ~Pt~eEIA~~Lgis~e~v~~~l~~~ 390 (508)
..+..+||+.+|++...+..++...
T Consensus 66 ~~t~~ela~~l~is~~tvs~~l~~L 90 (162)
T 3cjn_A 66 GLPIGTLGIFAVVEQSTLSRALDGL 90 (162)
T ss_dssp SEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCCChhHHHHHHHHH
Confidence 4589999999999999999988876
No 493
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=32.66 E-value=34 Score=29.32 Aligned_cols=29 Identities=17% Similarity=0.417 Sum_probs=0.0
Q ss_pred HhHHhccCCCCCCHHHHHHHHCCCHHHHHHH
Q 010521 454 IRLYYGLDKECLTWEDISKRIGLSRERVRQV 484 (508)
Q Consensus 454 I~LryGLd~eg~TleEIAe~LgIS~erVrqi 484 (508)
+....| +++.|.++||+..|||++++-..
T Consensus 20 l~~~~G--~~~~ti~~Ia~~agvs~~t~Y~~ 48 (194)
T 2g7s_A 20 LIIRGG--YNSFSYADISQVVGIRNASIHHH 48 (194)
T ss_dssp HHHHHC--GGGCCHHHHHHHHCCCHHHHHHH
T ss_pred HHHHcC--cccCCHHHHHHHhCCCchHHHHH
No 494
>2d6y_A Putative TETR family regulatory protein; helix-turn-helix, gene regulation; HET: TLA; 2.30A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=32.63 E-value=42 Score=29.73 Aligned_cols=24 Identities=4% Similarity=-0.049 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHH
Q 010521 462 KECLTWEDISKRIGLSRERVRQVG 485 (508)
Q Consensus 462 ~eg~TleEIAe~LgIS~erVrqi~ 485 (508)
+++.|.++||+..|||+.++-...
T Consensus 26 ~~~~s~~~IA~~aGvs~~tiY~~F 49 (202)
T 2d6y_A 26 IAGARIDRIAAEARANKQLIYAYY 49 (202)
T ss_dssp TTSCCHHHHHHHHTCCHHHHHHHH
T ss_pred cccCCHHHHHHHhCCCHHHHHHHc
Confidence 688999999999999999998765
No 495
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=32.60 E-value=42 Score=34.38 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=28.7
Q ss_pred HHHHhHHhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 010521 451 REIIRLYYGLDKECLTWEDISKRIGLSRERVRQVGLVALE 490 (508)
Q Consensus 451 R~VI~LryGLd~eg~TleEIAe~LgIS~erVrqi~~rALk 490 (508)
+.|+.+-+- ..+.|..|||+.+|+|+.||.++..+-++
T Consensus 42 ~~il~~l~~--~~~~sr~ela~~~gls~~tv~~~v~~L~~ 79 (429)
T 1z05_A 42 GRVYKLIDQ--KGPISRIDLSKESELAPASITKITRELID 79 (429)
T ss_dssp HHHHHHHHH--HCSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH--cCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 445555431 35799999999999999999988766544
No 496
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=32.52 E-value=39 Score=29.83 Aligned_cols=27 Identities=15% Similarity=0.233 Sum_probs=22.9
Q ss_pred HHhccCCCCCCHHHHHHHHCCCHHHHHHH
Q 010521 456 LYYGLDKECLTWEDISKRIGLSRERVRQV 484 (508)
Q Consensus 456 LryGLd~eg~TleEIAe~LgIS~erVrqi 484 (508)
...| +++.|..+||+..|||+.++-..
T Consensus 24 ~~~G--~~~~s~~~IA~~aGvs~~t~Y~~ 50 (210)
T 3vib_A 24 YRKG--IARTSLNEIAQAAGVTRDALYWH 50 (210)
T ss_dssp HHHC--TTTCCHHHHHHHHTSCHHHHHHH
T ss_pred HHhC--cccCCHHHHHHHHCcCHHHHHHH
Confidence 3346 78999999999999999999764
No 497
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=32.39 E-value=43 Score=29.65 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=23.8
Q ss_pred HHhccCCCCCCHHHHHHHHCCCHHHHHHHH
Q 010521 456 LYYGLDKECLTWEDISKRIGLSRERVRQVG 485 (508)
Q Consensus 456 LryGLd~eg~TleEIAe~LgIS~erVrqi~ 485 (508)
...| +++.|..+||+..|||+.++-...
T Consensus 25 ~~~G--y~~ts~~~IA~~aGvsk~tlY~~F 52 (202)
T 2i10_A 25 WRQG--YEGTSITDLTKALGINPPSLYAAF 52 (202)
T ss_dssp HHHT--TTTCCHHHHHHHHTCCHHHHHHHH
T ss_pred HHhC--cccCCHHHHHHHhCCChHHHHHHh
Confidence 3446 789999999999999999997654
No 498
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=32.37 E-value=2.2e+02 Score=23.83 Aligned_cols=75 Identities=11% Similarity=0.051 Sum_probs=53.9
Q ss_pred hC-CCCchHHHHHHhccChHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhcc
Q 010521 235 LG-CEPSMEQLAASLRISRPELQSILME-CSLAREKLVMSNVRLVMSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309 (508)
Q Consensus 235 ~g-~~p~~~~~a~~~~~s~~~L~~~l~e-~~~A~e~LIe~yl~LV~sIAkrY~~~g~d~EDLiQEG~IgLirAiekF 309 (508)
.| ...+.+++|+.+|++...+-+--.. .++-+..++..+..-+............+..+-+...+-.++..+...
T Consensus 22 ~G~~~~t~~~Ia~~agvs~~t~Y~~F~~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 98 (191)
T 1sgm_A 22 QGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAVTYTGKIVEHLIQQSMDESSDPVEAIQLFIKKTASQFDNT 98 (191)
T ss_dssp HCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSSG
T ss_pred cCccccCHHHHHHHHCCCchhHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHhcccc
Confidence 44 3579999999999999999999986 777788888777776665555444444566666666666666555443
No 499
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=32.29 E-value=1.5e+02 Score=25.08 Aligned_cols=72 Identities=7% Similarity=-0.003 Sum_probs=54.3
Q ss_pred CCchHHHHHHhccChHHHHHhhhhhHHHHHHHHHHHHHHH--HHHHHHhcCCCCCHHHHHHHHHHHHHHhhhcc
Q 010521 238 EPSMEQLAASLRISRPELQSILMECSLAREKLVMSNVRLV--MSIAQRYDNMGADMADLVQGGLIGLLRGIEKF 309 (508)
Q Consensus 238 ~p~~~~~a~~~~~s~~~L~~~l~e~~~A~e~LIe~yl~LV--~sIAkrY~~~g~d~EDLiQEG~IgLirAiekF 309 (508)
..+.+++|..+|++...+-.--...++-+..++..+..-+ ............+..+-+...+..+++.+...
T Consensus 30 ~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 103 (196)
T 3col_A 30 GVSTTKVAKRVGIAQSNVYLYFKNKQALIDSVYARETNRILSTTDLDRLSDSTIDVTTRIRLYVQQVYDYSLAN 103 (196)
T ss_dssp GCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTTCCHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHhCCcHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHhccCCCCHHHHHHHHHHHHHHHHHcC
Confidence 5789999999999999999888888788888888777766 65555555555677777776666666665543
No 500
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=32.25 E-value=45 Score=30.30 Aligned_cols=37 Identities=11% Similarity=0.071 Sum_probs=28.4
Q ss_pred CHHHHHHHhHHhccCCCCCCHHHHHHHHC-CCHHHHHHHHH
Q 010521 447 GEREREIIRLYYGLDKECLTWEDISKRIG-LSRERVRQVGL 486 (508)
Q Consensus 447 p~rER~VI~LryGLd~eg~TleEIAe~Lg-IS~erVrqi~~ 486 (508)
.|.=..||.+-. ..++|..|||+.|| +|+.+|++.+.
T Consensus 22 ~P~Rl~il~~L~---~~~~~~~~l~~~l~~~~~~~~s~Hl~ 59 (182)
T 4g6q_A 22 HPLRWRITQLLI---GRSLTTRELAELLPDVATTTLYRQVG 59 (182)
T ss_dssp SHHHHHHHHHTT---TSCEEHHHHHHHCTTBCHHHHHHHHH
T ss_pred CHHHHHHHHHHH---hCCCCHHHHHHHhcCCCHHHHHHHHH
Confidence 555555665544 57899999999996 99999987754
Done!