BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010523
(508 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8C|A Chain A, Crystal Structure Of A Plasma Membrane Proton Pump
pdb|3B8C|B Chain B, Crystal Structure Of A Plasma Membrane Proton Pump
Length = 885
Score = 536 bits (1380), Expect = e-152, Method: Compositional matrix adjust.
Identities = 274/432 (63%), Positives = 319/432 (73%), Gaps = 7/432 (1%)
Query: 1 MFAIQHREYRTXXXXXXXXXXXXXPIAMPTVLSVTMAIGSKRLSLQGVITKRMSAIVDMA 60
M+ IQ R+YR PIAMPTVLSVTMAIGS RLS QG ITKRM+AI +MA
Sbjct: 262 MYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMA 321
Query: 61 GMDVLCCDKTGTLTLNKLTVDKNLIEIFAGGVDADTVVLMAARASQVENLDVIDAAIVGM 120
GMDVLC DKTGTLTLNKL+VDKNL+E+F GV+ D V+L AA AS+VEN D IDAA+VGM
Sbjct: 322 GMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFAAMASRVENQDAIDAAMVGM 381
Query: 121 LADPKEARADIQEVHFLPFDPTGKRTALTYIDSEGKMHRVTKGSPEQILNLLHNKSKIGR 180
LADPKEARA I+EVHFLPF+P KRTALTYID G HRV+KG+PEQIL L + + +
Sbjct: 382 LADPKEARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPEQILELAKASNDLSK 441
Query: 181 KVNAVINKFAERGLRSLAVAYQEVPEGSKESSGSPWQFIGLIPLFDPPIHDSAETIRRAL 240
KV ++I+K+AERGLRSLAVA Q VPE +KES G+PW+F+GL+PLFDPP HDSAETIRRAL
Sbjct: 442 KVLSIIDKYAERGLRSLAVARQVVPEKTKESPGAPWEFVGLLPLFDPPRHDSAETIRRAL 501
Query: 241 SLGLGVKMITGDQLAIAKETGRRLGMGTNMYPSSALSGQDRDESIVALPVDELIEKADGF 300
+LG+ VKMITGDQLAI KETGRRLGMGTNMYPSSAL G +D ++ ++PV+ELIEKADGF
Sbjct: 502 NLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTHKDANLASIPVEELIEKADGF 561
Query: 301 AGVFPEHKYEIVKHLQARNHICGMIGNGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLT 360
AGVFPEHKYEIVK LQ R HI GM G+GVNDAPALKK VLT
Sbjct: 562 AGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLT 621
Query: 361 EPGLNVIITAVLISRAIFQRMRNYMVRGIDGLSSTEF-----IQVLELNFLFTLDTVIAI 415
EPGL+VII+AVL SRAIFQRM+NY + + F + E +F + +IAI
Sbjct: 622 EPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWEFDFSAFMVLIIAI 681
Query: 416 LQ--TAFTSKKD 425
L T T KD
Sbjct: 682 LNDGTIMTISKD 693
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 14/19 (73%), Positives = 16/19 (84%)
Query: 417 QTAFTSKKDFGKEERELLW 435
+TAFT KKD+GKEERE W
Sbjct: 857 KTAFTMKKDYGKEEREAQW 875
>pdb|1MHS|A Chain A, Model Of Neurospora Crassa Proton Atpase
pdb|1MHS|B Chain B, Model Of Neurospora Crassa Proton Atpase
Length = 920
Score = 233 bits (593), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 140/374 (37%), Positives = 207/374 (55%), Gaps = 21/374 (5%)
Query: 25 PIAMPTVLSVTMAIGSKRLSLQGVITKRMSAIVDMAGMDVLCCDKTGTLTLNKLTVDKNL 84
P+ +P V++ TMA+G+ L+ + I +++SAI +AG+++LC DKTGTLT NKL++
Sbjct: 335 PVGLPAVVTTTMAVGAAYLAKKKAIVQKLSAIESLAGVEILCSDKTGTLTKNKLSLHDPY 394
Query: 85 IEIFAGGVDADTVVLMAARAS--QVENLDVIDAAIVGMLADPKEARADIQE---VHFLPF 139
GVD + ++L A A+ + + +D ID A + L A++ + + + F PF
Sbjct: 395 T---VAGVDPEDLMLTACLAASRKKKGIDAIDKAFLKSLKYYPRAKSVLSKYKVLQFHPF 451
Query: 140 DPTGKRTALTYIDSEGKMHRVTKGSPEQILNLLHNKSKIGRKVN-AVINK---FAERGLR 195
DP K+ +G+ KG+P +L + I +V+ A NK FA RG R
Sbjct: 452 DPVSKKVVAVVESPQGERITCVKGAPLFVLKTVEEDHPIPEEVDQAYKNKVAEFATRGFR 511
Query: 196 SLAVAYQEVPEGSKESSGSPWQFIGLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLA 255
SL VA K GS W+ +G++P DPP HD+ +T+ A +LGL +KM+TGD +
Sbjct: 512 SLGVA-------RKRGEGS-WEILGIMPCMDPPRHDTYKTVCEAKTLGLSIKMLTGDAVG 563
Query: 256 IAKETGRRLGMGTNMYPSSALSGQDRDESIVALPVDELIEKADGFAGVFPEHKYEIVKHL 315
IA+ET R+LG+GTN+Y + L + + V + +E ADGFA VFP+HKY +V+ L
Sbjct: 564 IARETSRQLGLGTNIYNAERLGLGGGGD-MPGSEVYDFVEAADGFAEVFPQHKYNVVEIL 622
Query: 316 QARNHICGMIGNGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLNVIITAVLISR 375
Q R ++ M G+GVNDAP+LKK V PGL II A+ SR
Sbjct: 623 QQRGYLVAMTGDGVNDAPSLKKADTGIAVEGSSDAARSAADIVFLAPGLGAIIDALKTSR 682
Query: 376 AIFQRMRNYMVRGI 389
IF RM Y+V I
Sbjct: 683 QIFHRMYAYVVYRI 696
>pdb|2DQS|A Chain A, Crystal Structure Of The Calcium Pump With Amppcp In The
Absence Of Calcium
pdb|2EAR|A Chain A, P21 Crystal Of The Sr Ca2+-Atpase With Bound Tg
pdb|2EAT|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa And
Tg
pdb|2ZBF|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 And Tg In
The Absence Of Calcium
pdb|2ZBG|A Chain A, Calcium Pump Crystal Structure With Bound Alf4 And Tg In
The Absence Of Calcium
pdb|3AR2|A Chain A, Calcium Pump Crystal Structure With Bound Amppcp And Ca2+
pdb|3AR3|A Chain A, Calcium Pump Crystal Structure With Bound Adp And Tg
pdb|3AR4|A Chain A, Calcium Pump Crystal Structure With Bound Atp And Tg In
The Absence Of Ca2+
pdb|3AR5|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Amp And Tg
pdb|3AR6|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Adp And Tg
In The Absence Of Calcium
pdb|3AR7|A Chain A, Calcium Pump Crystal Structure With Bound Tnp-Atp And Tg
In The Absence Of Ca2+
pdb|3AR8|A Chain A, Calcium Pump Crystal Structure With Bound Alf4, Tnp-Amp
And Tg
pdb|3AR9|A Chain A, Calcium Pump Crystal Structure With Bound Bef3, Tnp-Amp
And Tg In The Absence Of Calcium
pdb|2ZBE|A Chain A, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBE|B Chain B, Calcium Pump Crystal Structure With Bound Bef3 In The
Absence Of Calcium And Tg
pdb|2ZBD|A Chain A, Crystal Structure Of The Sr Calcium Pump With Bound
Aluminium Fluoride, Adp And Calcium
Length = 995
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 119/252 (47%), Gaps = 33/252 (13%)
Query: 162 KGSPEQILNLLHNKSKIG-----------RKVNAVINKFA--ERGLRSLAVAYQEVPEGS 208
KG+PE +++ N ++G K+ +VI ++ LR LA+A ++ P
Sbjct: 516 KGAPEGVIDRC-NYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKR 574
Query: 209 KE----------SSGSPWQFIGLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAK 258
+E + F+G++ + DPP + +I+ G+ V MITGD A
Sbjct: 575 EEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAI 634
Query: 259 ETGRRLGM-GTNM-YPSSALSGQDRDESIVALPVDELIE---KADGFAGVFPEHKYEIVK 313
RR+G+ G N A +G++ D+ LP+ E E +A FA V P HK +IV+
Sbjct: 635 AICRRIGIFGENEEVADRAYTGREFDD----LPLAEQREACRRACCFARVEPSHKSKIVE 690
Query: 314 HLQARNHICGMIGNGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLNVIITAVLI 373
+LQ+ + I M G+GVNDAPALKK VL + + I+ AV
Sbjct: 691 YLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEE 750
Query: 374 SRAIFQRMRNYM 385
RAI+ M+ ++
Sbjct: 751 GRAIYNNMKQFI 762
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%)
Query: 25 PIAMPTVLSVTMAIGSKRLSLQGVITKRMSAIVDMAGMDVLCCDKTGTLTLNKLTVDKNL 84
P +P V++ +A+G++R++ + I + + ++ + V+C DKTGTLT N+++V K
Sbjct: 309 PEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMF 368
Query: 85 I 85
I
Sbjct: 369 I 369
>pdb|1KJU|A Chain A, Ca2+-Atpase In The E2 State
pdb|1IWO|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1IWO|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase In The Absence Of
Ca2+
pdb|1SU4|A Chain A, Crystal Structure Of Calcium Atpase With Two Bound Calcium
Ions
pdb|1T5S|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-amppcp Form
pdb|1T5T|A Chain A, Structure Of The (Sr)ca2+-Atpase Ca2-E1-Adp:alf4- Form
pdb|1VFP|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1VFP|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Bound Amppcp
pdb|1WPG|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|B Chain B, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|C Chain C, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1WPG|D Chain D, Crystal Structure Of The Sr Ca2+-Atpase With Mgf4
pdb|1XP5|A Chain A, Structure Of The (Sr)ca2+-Atpase E2-Alf4- Form
pdb|2AGV|A Chain A, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2AGV|B Chain B, Crystal Structure Of The Sr Ca2+-atpase With Bhq And Tg
pdb|2BY4|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Boc-12adt.
pdb|2C88|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg):amppcp
Form
pdb|2C8K|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) With
Partially Occupied Amppcp Site
pdb|2C8L|A Chain A, Crystal Structure Of (Sr) Calcium-Atpase E2(Tg) Form
pdb|2C9M|A Chain A, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2C9M|B Chain B, Structure Of (Sr) Calcium-Atpase In The Ca2e1 State Solved
In A P1 Crystal Form.
pdb|2O9J|A Chain A, Crystal Structure Of Calcium Atpase With Bound Magnesium
Fluoride And Cyclopiazonic Acid
pdb|2OA0|A Chain A, Crystal Structure Of Calcium Atpase With Bound Adp And
Cyclopiazonic Acid
pdb|3B9B|A Chain A, Structure Of The E2 Beryllium Fluoride Complex Of The
Serca Ca2+-Atpase
pdb|3B9R|A Chain A, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|3B9R|B Chain B, Serca Ca2+-Atpase E2 Aluminium Fluoride Complex Without
Thapsigargin
pdb|2EAS|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa
pdb|2EAU|A Chain A, Crystal Structure Of The Sr Ca2+-Atpase With Bound Cpa In
The Presence Of Curcumin
pdb|3FGO|A Chain A, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FGO|B Chain B, Crystal Structure Of The E2 Magnesium Fluoride Complex Of
The (Sr) Ca2+-Atpase With Bound Cpa And Amppcp
pdb|3FPB|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic Acid With Atp
pdb|3FPS|A Chain A, The Structure Of Sarcoplasmic Reticulum Ca2+-Atpase Bound
To Cyclopiazonic And Adp
pdb|3NAL|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dtb
pdb|3NAM|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With The
Thapsigargin Derivative Dotg
pdb|3NAN|A Chain A, Sr Ca(2+)-Atpase In The Hne2 State Complexed With A
Thapsigargin Derivative Boc-(Phi)tg
pdb|3N5K|A Chain A, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N5K|B Chain B, Structure Of The (sr)ca2+-atpase E2-alf4- Form
pdb|3N8G|A Chain A, Structure Of The (sr)ca2+-atpase Ca2-e1-caamppcp Form
pdb|2YFY|A Chain A, Serca In The Hne2 State Complexed With Debutanoyl
Thapsigargin
Length = 994
Score = 93.2 bits (230), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 119/252 (47%), Gaps = 33/252 (13%)
Query: 162 KGSPEQILNLLHNKSKIG-----------RKVNAVINKFA--ERGLRSLAVAYQEVPEGS 208
KG+PE +++ N ++G K+ +VI ++ LR LA+A ++ P
Sbjct: 515 KGAPEGVIDRC-NYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKR 573
Query: 209 KE----------SSGSPWQFIGLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAK 258
+E + F+G++ + DPP + +I+ G+ V MITGD A
Sbjct: 574 EEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAI 633
Query: 259 ETGRRLGM-GTNM-YPSSALSGQDRDESIVALPVDELIE---KADGFAGVFPEHKYEIVK 313
RR+G+ G N A +G++ D+ LP+ E E +A FA V P HK +IV+
Sbjct: 634 AICRRIGIFGENEEVADRAYTGREFDD----LPLAEQREACRRACCFARVEPSHKSKIVE 689
Query: 314 HLQARNHICGMIGNGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLNVIITAVLI 373
+LQ+ + I M G+GVNDAPALKK VL + + I+ AV
Sbjct: 690 YLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEE 749
Query: 374 SRAIFQRMRNYM 385
RAI+ M+ ++
Sbjct: 750 GRAIYNNMKQFI 761
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%)
Query: 25 PIAMPTVLSVTMAIGSKRLSLQGVITKRMSAIVDMAGMDVLCCDKTGTLTLNKLTVDKNL 84
P +P V++ +A+G++R++ + I + + ++ + V+C DKTGTLT N+++V K
Sbjct: 308 PEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMF 367
Query: 85 I 85
I
Sbjct: 368 I 368
>pdb|3BA6|A Chain A, Structure Of The Ca2e1p Phosphoenzyme Intermediate Of The
Serca Ca2+-Atpase
Length = 994
Score = 92.8 bits (229), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 119/252 (47%), Gaps = 33/252 (13%)
Query: 162 KGSPEQILNLLHNKSKIG-----------RKVNAVINKFA--ERGLRSLAVAYQEVPEGS 208
KG+PE +++ N ++G K+ +VI ++ LR LA+A ++ P
Sbjct: 515 KGAPEGVIDRC-NYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKR 573
Query: 209 KE----------SSGSPWQFIGLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAK 258
+E + F+G++ + DPP + +I+ G+ V MITGD A
Sbjct: 574 EEMVLDDSSRFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAI 633
Query: 259 ETGRRLGM-GTNM-YPSSALSGQDRDESIVALPVDELIE---KADGFAGVFPEHKYEIVK 313
RR+G+ G N A +G++ D+ LP+ E E +A FA V P HK +IV+
Sbjct: 634 AICRRIGIFGENEEVADRAYTGREFDD----LPLAEQREACRRACCFARVEPSHKSKIVE 689
Query: 314 HLQARNHICGMIGNGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLNVIITAVLI 373
+LQ+ + I M G+GVNDAPALKK VL + + I+ AV
Sbjct: 690 YLQSYDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEE 749
Query: 374 SRAIFQRMRNYM 385
RAI+ M+ ++
Sbjct: 750 GRAIYNNMKQFI 761
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 38/61 (62%)
Query: 25 PIAMPTVLSVTMAIGSKRLSLQGVITKRMSAIVDMAGMDVLCCDKTGTLTLNKLTVDKNL 84
P +P V++ +A+G++R++ + I + + ++ + V+C KTGTLT N+++V K
Sbjct: 308 PEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSXKTGTLTTNQMSVCKMF 367
Query: 85 I 85
I
Sbjct: 368 I 368
>pdb|3TLM|A Chain A, Crystal Structure Of Endoplasmic Reticulum Ca2+-Atpase
(Serca) From Bovine Muscle
Length = 992
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 75/252 (29%), Positives = 119/252 (47%), Gaps = 33/252 (13%)
Query: 162 KGSPEQILNLLHNKSKIG-----------RKVNAVINKFA--ERGLRSLAVAYQEVPEGS 208
KG+PE +++ N ++G K+ +VI ++ LR LA+A ++ P
Sbjct: 514 KGAPEGVIDRC-NYVRVGTTRVPMTGPVKEKILSVIKEWGTGRDTLRCLALATRDTPPKR 572
Query: 209 KE----------SSGSPWQFIGLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAK 258
+E + F+G++ + DPP + +I+ G+ V MITGD A
Sbjct: 573 EEMVLDDSTKFMEYETDLTFVGVVGMLDPPRKEVMGSIQLCRDAGIRVIMITGDNKGTAI 632
Query: 259 ETGRRLGM-GTNM-YPSSALSGQDRDESIVALPVDELIE---KADGFAGVFPEHKYEIVK 313
RR+G+ G N A +G++ D+ LP+ E E +A FA V P HK +IV+
Sbjct: 633 AICRRIGIFGENEDVADRAYTGREFDD----LPLAEQREACRRACCFARVEPTHKSKIVE 688
Query: 314 HLQARNHICGMIGNGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVLTEPGLNVIITAVLI 373
+LQ+ + I M G+GVNDAPALKK VL + + I+ AV
Sbjct: 689 YLQSFDEITAMTGDGVNDAPALKKAEIGIAMGSGTAVAKTASEMVLADDNFSTIVAAVEE 748
Query: 374 SRAIFQRMRNYM 385
RAI+ M+ ++
Sbjct: 749 GRAIYNNMKQFI 760
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 39/61 (63%)
Query: 25 PIAMPTVLSVTMAIGSKRLSLQGVITKRMSAIVDMAGMDVLCCDKTGTLTLNKLTVDKNL 84
P +P V++ +A+G++R++ + I + + ++ + V+C DKTGTLT N+++V K
Sbjct: 308 PEGLPAVITTCLALGTRRMAKKNAIVRSLPSVETLGCTSVICSDKTGTLTTNQMSVCKMF 367
Query: 85 I 85
I
Sbjct: 368 I 368
>pdb|3B8E|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3B8E|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
pdb|3KDP|A Chain A, Crystal Structure Of The Sodium-potassium Pump
pdb|3KDP|C Chain C, Crystal Structure Of The Sodium-potassium Pump
Length = 998
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 95/395 (24%), Positives = 168/395 (42%), Gaps = 82/395 (20%)
Query: 25 PIAMPTVLSVTMAIGSKRLSLQGVITKRMSAIVDMAGMDVLCCDKTGTLTLNKLTV---- 80
P + ++V + + +KR++ + + K + A+ + +C DKTGTLT N++TV
Sbjct: 308 PEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMW 367
Query: 81 -DKNLIEIFA----GGVDADT----------VVLMAARA---SQVENLDVIDAAIVG--- 119
D + E GV D + + RA + ENL ++ A+ G
Sbjct: 368 SDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDAS 427
Query: 120 ----------MLADPKEARADIQEVHFLPFDPTGKRTALTYID---SEGKMHRVTKGSPE 166
KE R ++ +PF+ T K + + +E + V KG+PE
Sbjct: 428 ESALLKCIELCCGSVKEMRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPE 487
Query: 167 QILN-----LLHNKSK-IGRKV-NAVINKFAERG--------LRSLAVAYQEVPEGSK-- 209
+IL+ L+H K + + ++ +A N + E G L + ++ PEG +
Sbjct: 488 RILDRCSSILIHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQFD 547
Query: 210 -ESSGSPWQ---FIGLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAKETGRRLG 265
+ P F+GLI + DPP + + + S G+ V M+TGD AK + +G
Sbjct: 548 TDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVG 607
Query: 266 MGTN------------MYPSSALSGQDRDESIV---------ALPVDELIEKADG--FAG 302
+ + P S ++ +D +V + +D++++ FA
Sbjct: 608 IISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFAR 667
Query: 303 VFPEHKYEIVKHLQARNHICGMIGNGVNDAPALKK 337
P+ K IV+ Q + I + G+GVND+PA KK
Sbjct: 668 TSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKK 702
>pdb|3N23|A Chain A, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N23|C Chain C, Crystal Structure Of The High Affinity Complex Between
Ouabain And The E2p Form Of The Sodium-Potassium Pump
pdb|3N2F|A Chain A, Crystal Structure Of The Sodium-Potassium Pump
pdb|3N2F|C Chain C, Crystal Structure Of The Sodium-Potassium Pump
Length = 992
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 94/395 (23%), Positives = 167/395 (42%), Gaps = 82/395 (20%)
Query: 25 PIAMPTVLSVTMAIGSKRLSLQGVITKRMSAIVDMAGMDVLCCDKTGTLTLNKLTV---- 80
P + ++V + + +KR++ + + K + A+ + +C KTGTLT N++TV
Sbjct: 302 PEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSXKTGTLTQNRMTVAHMW 361
Query: 81 -DKNLIEIFA----GGVDADT----------VVLMAARA---SQVENLDVIDAAIVG--- 119
D + E GV D + + RA + ENL ++ A+ G
Sbjct: 362 SDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQENLPILKRAVAGDAS 421
Query: 120 ----------MLADPKEARADIQEVHFLPFDPTGKRTALTYID---SEGKMHRVTKGSPE 166
KE R ++ +PF+ T K + + +E + V KG+PE
Sbjct: 422 ESALLKCIELCCGSVKEMRERYTKIVEIPFNSTNKYQLSIHKNPNTAEPRHLLVMKGAPE 481
Query: 167 QILN-----LLHNKSK-IGRKV-NAVINKFAERG--------LRSLAVAYQEVPEGSK-- 209
+IL+ L+H K + + ++ +A N + E G L + ++ PEG +
Sbjct: 482 RILDRCSSILIHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLFLPDEQFPEGFQFD 541
Query: 210 -ESSGSPWQ---FIGLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAKETGRRLG 265
+ P F+GLI + DPP + + + S G+ V M+TGD AK + +G
Sbjct: 542 TDDVNFPLDNLCFVGLISMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAIAKGVG 601
Query: 266 MGTN------------MYPSSALSGQDRDESIV---------ALPVDELIEKADG--FAG 302
+ + P S ++ +D +V + +D++++ FA
Sbjct: 602 IISEGNETVEDIAARLNIPVSQVNPRDAKACVVHGSDLKDMTSEQLDDILKYHTEIVFAR 661
Query: 303 VFPEHKYEIVKHLQARNHICGMIGNGVNDAPALKK 337
P+ K IV+ Q + I + G+GVND+PA KK
Sbjct: 662 TSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPASKK 696
>pdb|2ZXE|A Chain A, Crystal Structure Of The Sodium - Potassium Pump In The
E2.2k+.Pi State
pdb|3A3Y|A Chain A, Crystal Structure Of The Sodium-potassium Pump With Bound
Potassium And Ouabain
Length = 1028
Score = 76.3 bits (186), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 99/402 (24%), Positives = 166/402 (41%), Gaps = 96/402 (23%)
Query: 25 PIAMPTVLSVTMAIGSKRLSLQGVITKRMSAIVDMAGMDVLCCDKTGTLTLNKLTV---- 80
P + ++V + + +KR++ + + K + A+ + +C DKTGTLT N++TV
Sbjct: 338 PEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSDKTGTLTQNRMTVAHMW 397
Query: 81 -DKNLIE--------------------------------IFAGGVDADTVV--LMAARAS 105
D + E +F G D ++ +A AS
Sbjct: 398 FDNQIHEADTTENQSGAAFDKTSATWSALSRIAALCNRAVFQAGQDNVPILKRSVAGDAS 457
Query: 106 QVENLDVIDAAIVGMLADPKEARADIQEVHFLPFDPTGKRTALTYID---SEGKMHRVTK 162
+ L I+ G + ++ I E+ PF+ T K + + SE + V K
Sbjct: 458 ESALLKCIELC-CGSVQGMRDRNPKIVEI---PFNSTNKYQLSIHENEKSSESRYLLVMK 513
Query: 163 GSPEQILN----LLHNKSKIGRKVN---AVINKFAE---RGLRSLAVAYQEVPEGSKESS 212
G+PE+IL+ +L N ++ K + A N + E G R L + +PE K +
Sbjct: 514 GAPERILDRCSTILLNGAEEPLKEDMKEAFQNAYLELGGLGERVLGFCHFALPE-DKYNE 572
Query: 213 GSPWQ------------FIGLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAKET 260
G P+ F+GL+ + DPP + + + S G+ V M+TGD AK
Sbjct: 573 GYPFDADEPNFPTTDLCFVGLMAMIDPPRAAVPDAVGKCRSAGIKVIMVTGDHPITAKAI 632
Query: 261 GRRLGMGT------------------NMYPSSA----LSGQD-RDESIVALPVDELIEKA 297
+ +G+ + + P A + G D +D S L D+++
Sbjct: 633 AKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHGSDLKDLSTEVL--DDILHYH 690
Query: 298 DG--FAGVFPEHKYEIVKHLQARNHICGMIGNGVNDAPALKK 337
FA P+ K IV+ Q + I + G+GVND+PALKK
Sbjct: 691 TEIVFARTSPQQKLIIVEGCQRQGAIVAVTGDGVNDSPALKK 732
>pdb|3IXZ|A Chain A, Pig Gastric H+K+-Atpase Complexed With Aluminium Fluoride
pdb|2XZB|A Chain A, Pig Gastric H,K-Atpase With Bound Bef And Sch28080
pdb|2YN9|A Chain A, Cryo-em Structure Of Gastric H+,k+-atpase With Bound
Rubidium
Length = 1034
Score = 72.0 bits (175), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 94/403 (23%), Positives = 154/403 (38%), Gaps = 98/403 (24%)
Query: 25 PIAMPTVLSVTMAIGSKRLSLQGVITKRMSAIVDMAGMDVLCCDKTGTLTLNKLTVDKNL 84
P + ++V +++ +KRL+ + + K + A+ + V+C DKTGTLT N++TV
Sbjct: 343 PEGLLATVTVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLW 402
Query: 85 IE--IFAGGVDADT-----------------VVLMAARASQVENLDVIDAAIVGMLADPK 125
+ I + D V+ + RA+ D + ++ D
Sbjct: 403 FDNHIHSADTTEDQSGQTFDQSSETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDAS 462
Query: 126 EA----------------RADIQEVHFLPFDPTGK--RTALTYIDSEGKMH-RVTKGSPE 166
E R +V +PF+ T K + T D H V KG+PE
Sbjct: 463 ETALLKFSELTLGNAMGYRERFPKVCEIPFNSTNKFQLSIHTLEDPRDPRHVLVMKGAPE 522
Query: 167 QILNLLHNKSKIGRKV-------------NAVINKFAER--GLRSLAVAYQEVPEGSK-- 209
++L + G+++ + ER G L ++ ++ P G
Sbjct: 523 RVLERCSSILIKGQELPLDEQWREAFQTAYLSLGGLGERVLGFCQLYLSEKDYPPGYAFD 582
Query: 210 -ESSGSP---WQFIGLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAKETGRRLG 265
E+ P F GL+ + DPP + + + + G+ V M+TGD AK +G
Sbjct: 583 VEAMNFPTSGLSFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDHPITAKAIAASVG 642
Query: 266 MGTNMYPSSALSGQDRDESIVA---LPVD-----------------------ELIEKADG 299
+ + G + E I A +PVD EL+E
Sbjct: 643 IISE--------GSETVEDIAARLRVPVDQVNRKDARACVINGMQLKDMDPSELVEALRT 694
Query: 300 -----FAGVFPEHKYEIVKHLQARNHICGMIGNGVNDAPALKK 337
FA P+ K IV+ Q I + G+GVND+PALKK
Sbjct: 695 HPEMVFARTSPQQKLVIVESCQRLGAIVAVTGDGVNDSPALKK 737
>pdb|3SKY|A Chain A, 2.1a Crystal Structure Of The Phosphate Bound Atp Binding
Domain Of Archaeoglobus Fulgidus Copb
Length = 274
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 31/116 (26%)
Query: 220 GLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAKETGRRLGMGTNMYPSSALSGQ 279
G+I L D +S E I + ++G+ M+TGD +AK LG+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLD------------ 184
Query: 280 DRDESIVALPVDELIEKADGFAGVFPEHKYEIVKHLQARNHICGMIGNGVNDAPAL 335
D FA V P K E VK +Q + ++ M+G+GVNDAPAL
Sbjct: 185 ------------------DYFAEVLPHEKAEKVKEVQ-QKYVTAMVGDGVNDAPAL 221
>pdb|3SKX|A Chain A, Crystal Structure Of The Atp Binding Domain Of
Archaeoglobus Fulgidus Copb
Length = 280
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 51/116 (43%), Gaps = 31/116 (26%)
Query: 220 GLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAKETGRRLGMGTNMYPSSALSGQ 279
G+I L D +S E I + ++G+ M+TGD +AK LG+
Sbjct: 137 GVIALADRIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLD------------ 184
Query: 280 DRDESIVALPVDELIEKADGFAGVFPEHKYEIVKHLQARNHICGMIGNGVNDAPAL 335
D FA V P K E VK +Q + ++ M+G+GVNDAPAL
Sbjct: 185 ------------------DYFAEVLPHEKAEKVKEVQ-QKYVTAMVGDGVNDAPAL 221
>pdb|2O98|P Chain P, Structure Of The 14-3-3 H+-Atpase Plant Complex
pdb|2O98|Q Chain Q, Structure Of The 14-3-3 H+-Atpase Plant Complex
Length = 52
Score = 48.5 bits (114), Expect = 9e-06, Method: Composition-based stats.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 457 SSYGELSWMXXXXXXXXXXXXXXXXHTLKGHVESLIRLKGLDIDAIQQSYSV 508
+++ EL+ + HTLKGHVES+++LKGLDI+ IQQSY +
Sbjct: 1 TNFNELNQLAEEAKRRAEIARQRELHTLKGHVESVVKLKGLDIETIQQSYDI 52
>pdb|3M50|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
EPIBESTAT
pdb|3M51|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY
PYRROLIDO
pdb|4DX0|P Chain P, Structure Of The 14-3-3PMA2 COMPLEX STABILIZED BY A
PYRAZOLE Derivative
Length = 31
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/27 (70%), Positives = 25/27 (92%)
Query: 482 HTLKGHVESLIRLKGLDIDAIQQSYSV 508
HTLKGHVE++++LKGLDI+ IQQSY +
Sbjct: 5 HTLKGHVEAVVKLKGLDIETIQQSYDI 31
>pdb|3A1E|A Chain A, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
pdb|3A1E|B Chain B, Crystal Structure Of The P- And N-Domains Of His462gln
Mutant Copa, A Copper-Transporting P-Type Atpase, Bound
With Amppcp-Mg
Length = 287
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 31/163 (19%)
Query: 220 GLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAKETGRRLGMGTNMYPSSALSGQ 279
G+I + D + ++ +G+ V MITGD A+ R L +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 280 DRDESIVALPVDELIEKADGFAGVFPEHKYEIVKHLQARNHICGMIGNGVNDAPALKKXX 339
+L+ A V P K E VK LQA+ + +G+G+NDAPAL +
Sbjct: 203 ------------DLV-----IAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQAD 244
Query: 340 XXXXXXXXXXXXXXXXXXVLTEPGLNVIITAVLISRAIFQRMR 382
VL L ++ A+ +SR +++
Sbjct: 245 LGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3A1C|A Chain A, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1C|B Chain B, Crystal Structure Of The P- And N-Domains Of Copa, A
Copper- Transporting P-Type Atpase, Bound With Amppcp-Mg
pdb|3A1D|A Chain A, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
pdb|3A1D|B Chain B, Crystal Structure Of The P- And N-domains Of Copa, A
Copper- Transporting P-type Atpase, Bound With Adp-mg
Length = 287
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 31/163 (19%)
Query: 220 GLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAKETGRRLGMGTNMYPSSALSGQ 279
G+I + D + ++ +G+ V MITGD A+ R L +
Sbjct: 156 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 202
Query: 280 DRDESIVALPVDELIEKADGFAGVFPEHKYEIVKHLQARNHICGMIGNGVNDAPALKKXX 339
+L+ A V P K E VK LQA+ + +G+G+NDAPAL +
Sbjct: 203 ------------DLV-----IAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQAD 244
Query: 340 XXXXXXXXXXXXXXXXXXVLTEPGLNVIITAVLISRAIFQRMR 382
VL L ++ A+ +SR +++
Sbjct: 245 LGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIK 287
>pdb|3J09|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J09|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 723
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 62/164 (37%), Gaps = 31/164 (18%)
Query: 220 GLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAKETGRRLGMGTNMYPSSALSGQ 279
G+I + D + ++ +G+ V MITGD A+ R L +
Sbjct: 528 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 574
Query: 280 DRDESIVALPVDELIEKADGFAGVFPEHKYEIVKHLQARNHICGMIGNGVNDAPALKKXX 339
D +I A V P K E VK LQA+ + +G+G+NDAPAL +
Sbjct: 575 -----------DLVI------AEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQAD 616
Query: 340 XXXXXXXXXXXXXXXXXXVLTEPGLNVIITAVLISRAIFQRMRN 383
VL L ++ A+ +SR +++
Sbjct: 617 LGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQ 660
>pdb|3J08|A Chain A, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
pdb|3J08|B Chain B, High Resolution Helical Reconstruction Of The Bacterial
P-Type Atpase Copper Transporter Copa
Length = 645
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 62/164 (37%), Gaps = 31/164 (18%)
Query: 220 GLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAKETGRRLGMGTNMYPSSALSGQ 279
G+I + D + ++ +G+ V MITGD A+ R L +
Sbjct: 450 GIIAVSDTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNL------------- 496
Query: 280 DRDESIVALPVDELIEKADGFAGVFPEHKYEIVKHLQARNHICGMIGNGVNDAPALKKXX 339
D +I A V P K E VK LQA+ + +G+G+NDAPAL +
Sbjct: 497 -----------DLVI------AEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQAD 538
Query: 340 XXXXXXXXXXXXXXXXXXVLTEPGLNVIITAVLISRAIFQRMRN 383
VL L ++ A+ +SR +++
Sbjct: 539 LGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQ 582
>pdb|3RFU|A Chain A, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|B Chain B, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|C Chain C, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
pdb|3RFU|D Chain D, Crystal Structure Of A Copper-Transporting Pib-Type Atpase
Length = 736
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 48/119 (40%), Gaps = 30/119 (25%)
Query: 219 IGLIPLFDPPIHDSAETIRRALSLGLGVKMITGDQLAIAKETGRRLGMGTNMYPSSALSG 278
+ L+ + DP + ETI G+ + M+TGD A+ LG
Sbjct: 546 VALLVVEDPIKSSTPETILELQQSGIEIVMLTGDSKRTAEAVAGTLG------------- 592
Query: 279 QDRDESIVALPVDELIEKADGFAGVFPEHKYEIVKHLQARNHICGMIGNGVNDAPALKK 337
I+K A + PE K IV L+ + I M G+GVNDAPAL K
Sbjct: 593 ---------------IKKV--VAEIMPEDKSRIVSELKDKGLIVAMAGDGVNDAPALAK 634
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 25 PIAMPTVLSVTMAIGSKRLSLQGVITKRMSAIVDMAGMDVLCCDKTGTLT 74
P A+ +++ +G + + GV+ K A+ M ++ L DKTGTLT
Sbjct: 383 PCALGLATPMSIMVGVGKGAQSGVLIKNAEALERMEKVNTLVVDKTGTLT 432
>pdb|2B8E|A Chain A, Copa Atp Binding Domain
pdb|2B8E|B Chain B, Copa Atp Binding Domain
pdb|2B8E|C Chain C, Copa Atp Binding Domain
Length = 273
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Query: 300 FAGVFPEHKYEIVKHLQARNHICGMIGNGVNDAPALKKXXXXXXXXXXXXXXXXXXXXVL 359
A V P K E VK LQA+ + +G+G+NDAPAL + VL
Sbjct: 186 IAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPALAQADLGIAVGSGSDVAVESGDIVL 244
Query: 360 TEPGLNVIITAVLISR 375
L ++ A+ +SR
Sbjct: 245 IRDDLRDVVAAIQLSR 260
>pdb|2VOY|I Chain I, Cryoem Model Of Copa, The Copper Transporting Atpase From
Archaeoglobus Fulgidus
Length = 128
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 300 FAGVFPEHKYEIVKHLQARNHICGMIGNGVNDAPAL 335
A V P K E VK LQA+ + +G+G+NDAPAL
Sbjct: 65 IAEVLPHQKSEEVKKLQAK-EVVAFVGDGINDAPAL 99
>pdb|3GWI|A Chain A, Crystal Structure Of Mg-Atpase Nucleotide Binding Domain
Length = 170
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 10/84 (11%)
Query: 132 QEVHFLPFDPTGKRTALTYIDSEGKMHRVTKGSPEQILNLL----HNKSKIG------RK 181
Q++ +PFD +R ++ ++ V KG+ ++ILN+ HN + RK
Sbjct: 57 QKIDEIPFDFERRRMSVVVAENTEHHQLVCKGALQEILNVCSQVRHNGEIVPLDDIMLRK 116
Query: 182 VNAVINKFAERGLRSLAVAYQEVP 205
+ V + +GLR +AVA + +P
Sbjct: 117 IKRVTDTLNRQGLRVVAVATKYLP 140
>pdb|1XAG|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAH|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+
And Nad+
pdb|1XAH|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+
And Nad+
pdb|1XAI|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAI|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAJ|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAJ|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAL|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-dehydroquinate Synthase (dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate (soak)
pdb|1XAL|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-dehydroquinate Synthase (dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate (soak)
Length = 354
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 38/83 (45%), Gaps = 11/83 (13%)
Query: 178 IGRKVNAVINKFAERGLRSL---------AVAY-QEVPEGSKESSGSPWQFIGLIPLFDP 227
I K++ V+ E+G+R AV Y ++P G G +QFI LFD
Sbjct: 218 IETKLDIVVADEKEQGVRKFLNLGHTFGHAVEYYHKIPHGHAVMVGIIYQFIVANALFDS 277
Query: 228 PIHDSAETIRRALSLGLGVKMIT 250
HD + I+ + LG + MIT
Sbjct: 278 K-HDISHYIQYLIQLGYPLDMIT 299
>pdb|1MO7|A Chain A, Atpase
pdb|1MO8|A Chain A, Atpase
Length = 213
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 28/153 (18%)
Query: 100 MAARASQVENLDVIDAAIVGMLADPKEARADIQEVHFLPFDPTGKRTALTYID---SEGK 156
+A AS+ L I+ G + + +E I E+ PF+ T K + + SE K
Sbjct: 65 VAGDASESALLKCIEVC-CGSVMEMREKYTKIVEI---PFNSTNKYQLSIHKNPNASEPK 120
Query: 157 MHRVTKGSPEQILN-----LLHNKSK-IGRKV-NAVINKFAERG--------LRSLAVAY 201
V KG+PE+IL+ LLH K + + ++ +A N + E G L +
Sbjct: 121 HLLVMKGAPERILDRCSSILLHGKEQPLDEELKDAFQNAYLELGGLGERVLGFCHLLLPD 180
Query: 202 QEVPEGSKESSGS------PWQFIGLIPLFDPP 228
++ PEG + + F+GLI + DPP
Sbjct: 181 EQFPEGFQFDTDEVNFPVDNLCFVGLISMIDPP 213
>pdb|1EY3|A Chain A, Structure Of Enoyl-Coa Hydratase Complexed With The
Substrate Dac-Coa
pdb|1EY3|B Chain B, Structure Of Enoyl-Coa Hydratase Complexed With The
Substrate Dac-Coa
pdb|1EY3|C Chain C, Structure Of Enoyl-Coa Hydratase Complexed With The
Substrate Dac-Coa
pdb|1EY3|D Chain D, Structure Of Enoyl-Coa Hydratase Complexed With The
Substrate Dac-Coa
pdb|1EY3|E Chain E, Structure Of Enoyl-Coa Hydratase Complexed With The
Substrate Dac-Coa
pdb|1EY3|F Chain F, Structure Of Enoyl-Coa Hydratase Complexed With The
Substrate Dac-Coa
Length = 258
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 176 SKIGRKVNAVINKFAERGLRSLAVAYQEVPEGSKESSGSPWQFIGLIPLFDPPIHDSAET 235
++I + V A +N +A G LA+ + G K G P +G IP +
Sbjct: 92 TRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPG-----AGGTQR 146
Query: 236 IRRALSLGLGVKMI-TGDQLAIAKETGRRLGMGTNMYPSSAL 276
+ RA+ L ++M+ TGD+ I+ + ++ G+ + ++P L
Sbjct: 147 LTRAVGKSLAMEMVLTGDR--ISAQDAKQAGLVSKIFPVETL 186
>pdb|1MJ3|A Chain A, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In
Complex With Hexadienoyl-Coa
pdb|1MJ3|B Chain B, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In
Complex With Hexadienoyl-Coa
pdb|1MJ3|C Chain C, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In
Complex With Hexadienoyl-Coa
pdb|1MJ3|D Chain D, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In
Complex With Hexadienoyl-Coa
pdb|1MJ3|E Chain E, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In
Complex With Hexadienoyl-Coa
pdb|1MJ3|F Chain F, Crystal Structure Analysis Of Rat Enoyl-Coa Hydratase In
Complex With Hexadienoyl-Coa
Length = 260
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 176 SKIGRKVNAVINKFAERGLRSLAVAYQEVPEGSKESSGSPWQFIGLIPLFDPPIHDSAET 235
++I + V A +N +A G LA+ + G K G P +G IP +
Sbjct: 94 TRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPG-----AGGTQR 148
Query: 236 IRRALSLGLGVKMI-TGDQLAIAKETGRRLGMGTNMYPSSAL 276
+ RA+ L ++M+ TGD+ I+ + ++ G+ + ++P L
Sbjct: 149 LTRAVGKSLAMEMVLTGDR--ISAQDAKQAGLVSKIFPVETL 188
>pdb|1DUB|A Chain A, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5
pdb|1DUB|B Chain B, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5
pdb|1DUB|C Chain C, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5
pdb|1DUB|D Chain D, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5
pdb|1DUB|E Chain E, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5
pdb|1DUB|F Chain F, 2-Enoyl-Coa Hydratase, Data Collected At 100 K, Ph 6.5
pdb|2DUB|A Chain A, Enoyl-Coa Hydratase Complexed With Octanoyl-Coa
pdb|2DUB|B Chain B, Enoyl-Coa Hydratase Complexed With Octanoyl-Coa
pdb|2DUB|C Chain C, Enoyl-Coa Hydratase Complexed With Octanoyl-Coa
pdb|2DUB|D Chain D, Enoyl-Coa Hydratase Complexed With Octanoyl-Coa
pdb|2DUB|E Chain E, Enoyl-Coa Hydratase Complexed With Octanoyl-Coa
pdb|2DUB|F Chain F, Enoyl-Coa Hydratase Complexed With Octanoyl-Coa
Length = 261
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 176 SKIGRKVNAVINKFAERGLRSLAVAYQEVPEGSKESSGSPWQFIGLIPLFDPPIHDSAET 235
++I + V A +N +A G LA+ + G K G P +G IP +
Sbjct: 95 TRIKKPVIAAVNGYALGGGCELAMMCDIIYAGEKAQFGQPEILLGTIPG-----AGGTQR 149
Query: 236 IRRALSLGLGVKMI-TGDQLAIAKETGRRLGMGTNMYPSSAL 276
+ RA+ L ++M+ TGD+ I+ + ++ G+ + ++P L
Sbjct: 150 LTRAVGKSLAMEMVLTGDR--ISAQDAKQAGLVSKIFPVETL 189
>pdb|3GDE|A Chain A, The Closed Conformation Of Atp-Dependent Dna Ligase From
Archaeoglobus Fulgidus
Length = 558
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 7/67 (10%)
Query: 176 SKIGRKVNAVINKFAERGLRSLAVAYQEVPEGSKESSGSPWQFIGLIPLFDPPIHDSAET 235
S+ G+KV I K+ VAYQE+ + K SG +F + L D D A+T
Sbjct: 489 SQQGKKVE-FIPKYV------FEVAYQEIQKSPKYESGYALRFPRFVRLRDDKDVDEADT 541
Query: 236 IRRALSL 242
I R +L
Sbjct: 542 IERVENL 548
>pdb|3ZBD|A Chain A, Structure Of Tgev Nsp1
pdb|3ZBD|B Chain B, Structure Of Tgev Nsp1
Length = 113
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 39/63 (61%), Gaps = 7/63 (11%)
Query: 276 LSGQDRDESIVALPVDELIEKA-----DGFAG-VF-PEHKYEIVKHLQARNHICGMIGNG 328
L +D ++ +LP+ +++++ +GF G VF PE+ ++V + +++ G++GNG
Sbjct: 17 LVNEDYQVNVPSLPIRDVLQEIKYCYRNGFEGYVFVPEYCRDLVDCDRKDHYVIGVLGNG 76
Query: 329 VND 331
V+D
Sbjct: 77 VSD 79
>pdb|1BXC|A Chain A, Xylose Isomerase From Thermus Caldophilus
pdb|1BXC|B Chain B, Xylose Isomerase From Thermus Caldophilus
pdb|1BXC|C Chain C, Xylose Isomerase From Thermus Caldophilus
pdb|1BXC|D Chain D, Xylose Isomerase From Thermus Caldophilus
Length = 387
Score = 29.3 bits (64), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 7/76 (9%)
Query: 194 LRSLAVAYQEVPEGSKESSGSPWQFIGLIPLFDPPIHDSAETIRRALSLGLGVKMITG-- 251
L+ A A++E PE + + + +PL DP H+ AE ++RA L L K G
Sbjct: 312 LKERAEAFREDPEVKELLAAYYQEDPAALPLMDPYSHEKAEALKRA-ELPLEAKRHRGYA 370
Query: 252 ----DQLAIAKETGRR 263
DQLA+ G R
Sbjct: 371 LERLDQLAVEYLLGVR 386
>pdb|1WR8|A Chain A, Crystal Structure Of Hypothetical Protein Ph1421 From
Pyrococcus Horikoshii.
pdb|1WR8|B Chain B, Crystal Structure Of Hypothetical Protein Ph1421 From
Pyrococcus Horikoshii
Length = 231
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 220 GLIPLFDPPIHDSA-ETIRRALSLGLGVKMITGDQLAIAK 258
G I + IH+ A E IRRA SLG+ + ++TG+ + A+
Sbjct: 12 GTITYPNRMIHEKALEAIRRAESLGIPIMLVTGNTVQFAE 51
>pdb|1E19|A Chain A, Structure Of The Carbamate Kinase-Like Carbamoyl Phosphate
Synthetase From The Hyperthermophilic Archaeon
Pyrococcus Furiosus Bound To Adp
pdb|1E19|B Chain B, Structure Of The Carbamate Kinase-Like Carbamoyl Phosphate
Synthetase From The Hyperthermophilic Archaeon
Pyrococcus Furiosus Bound To Adp
Length = 314
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 209 KESSGSPWQFIGLIPLFDPPIHDSAETIRRALSLGL 244
KE SG W+ + +P DP H AETI++ + G+
Sbjct: 154 KEDSGRGWRRV--VPSPDPKGHVEAETIKKLVERGV 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,409,381
Number of Sequences: 62578
Number of extensions: 473457
Number of successful extensions: 1703
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 1640
Number of HSP's gapped (non-prelim): 62
length of query: 508
length of database: 14,973,337
effective HSP length: 103
effective length of query: 405
effective length of database: 8,527,803
effective search space: 3453760215
effective search space used: 3453760215
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)