Query 010524
Match_columns 508
No_of_seqs 267 out of 1853
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 01:32:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010524.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010524hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0236 Sulfate/bicarbonate/ox 100.0 5.7E-91 1.2E-95 763.2 34.1 471 29-506 14-498 (665)
2 TIGR00815 sulP high affinity s 100.0 4.7E-81 1E-85 680.9 48.9 427 78-506 1-429 (563)
3 COG0659 SUL1 Sulfate permease 100.0 1E-76 2.2E-81 637.8 45.0 414 73-506 3-419 (554)
4 PRK11660 putative transporter; 100.0 2.2E-75 4.7E-80 636.6 47.9 408 80-505 18-449 (568)
5 PF00916 Sulfate_transp: Sulfa 100.0 4.5E-51 9.7E-56 409.1 16.6 280 190-469 1-280 (280)
6 COG2252 Xanthine/uracil/vitami 100.0 1.7E-30 3.6E-35 266.7 34.3 392 70-507 3-422 (436)
7 TIGR03173 pbuX xanthine permea 100.0 1.1E-26 2.4E-31 244.4 35.7 322 102-467 11-353 (406)
8 PRK10720 uracil transporter; P 99.9 2E-24 4.3E-29 227.8 35.8 358 102-507 30-416 (428)
9 TIGR00801 ncs2 uracil-xanthine 99.9 2.1E-24 4.6E-29 227.3 35.9 326 101-465 20-367 (415)
10 PF13792 Sulfate_tra_GLY: Sulf 99.9 2.3E-26 5E-31 186.2 7.8 83 77-159 1-84 (84)
11 TIGR03616 RutG pyrimidine util 99.9 7E-21 1.5E-25 200.8 32.4 328 91-459 29-372 (429)
12 PF00860 Xan_ur_permease: Perm 99.9 8.5E-19 1.8E-23 183.6 32.2 345 92-465 1-365 (389)
13 PRK11412 putative uracil/xanth 99.8 2.5E-17 5.5E-22 173.0 34.9 335 101-466 23-374 (433)
14 COG2233 UraA Xanthine/uracil p 99.8 1.6E-17 3.6E-22 172.3 25.8 308 122-464 57-377 (451)
15 TIGR00843 benE benzoate transp 99.5 2.1E-11 4.5E-16 125.8 30.2 340 93-492 22-391 (395)
16 TIGR00834 ae anion exchange pr 99.5 1.6E-10 3.5E-15 129.4 37.0 345 97-451 374-790 (900)
17 KOG1172 Na+-independent Cl/HCO 99.5 3.6E-10 7.7E-15 123.7 36.0 334 108-451 376-766 (876)
18 PF03594 BenE: Benzoate membra 99.3 3.1E-09 6.6E-14 108.1 26.6 343 93-494 6-377 (378)
19 COG3135 BenE Uncharacterized p 98.8 2.1E-06 4.5E-11 86.0 24.4 311 130-498 69-396 (402)
20 PF00955 HCO3_cotransp: HCO3- 98.8 1.6E-09 3.5E-14 115.5 2.2 345 97-451 38-471 (510)
21 KOG1292 Xanthine/uracil transp 98.5 1E-05 2.2E-10 84.2 20.1 310 103-444 29-384 (510)
22 PF11840 DUF3360: Protein of u 98.0 0.0026 5.6E-08 64.4 23.6 278 142-465 121-418 (492)
23 PRK10720 uracil transporter; P 93.3 0.73 1.6E-05 49.2 11.2 52 373-424 261-312 (428)
24 TIGR00815 sulP high affinity s 90.2 17 0.00036 40.3 18.0 117 84-218 251-373 (563)
25 COG0659 SUL1 Sulfate permease 86.9 14 0.00031 40.7 14.5 107 339-451 25-143 (554)
26 COG2233 UraA Xanthine/uracil p 86.0 3.9 8.5E-05 43.6 9.1 34 105-138 66-100 (451)
27 TIGR03173 pbuX xanthine permea 83.4 21 0.00045 37.8 13.4 98 99-213 225-332 (406)
28 TIGR00801 ncs2 uracil-xanthine 81.6 14 0.0003 39.3 11.3 112 99-227 240-362 (415)
29 PRK11412 putative uracil/xanth 78.4 15 0.00032 39.3 10.1 53 371-423 274-326 (433)
30 PRK11660 putative transporter; 65.9 55 0.0012 36.3 11.4 169 327-497 274-445 (568)
31 TIGR03616 RutG pyrimidine util 60.0 77 0.0017 33.8 10.8 109 99-224 253-370 (429)
32 PF00860 Xan_ur_permease: Perm 52.6 1.9E+02 0.0041 30.3 12.1 116 94-226 233-359 (389)
33 PF00916 Sulfate_transp: Sulfa 50.9 1.2E+02 0.0027 29.8 10.0 133 329-462 144-276 (280)
34 PHA00736 hypothetical protein 49.8 1.1E+02 0.0025 23.3 7.0 68 109-186 4-72 (79)
35 TIGR00843 benE benzoate transp 48.4 3.6E+02 0.0078 28.6 14.8 104 338-444 23-143 (395)
36 PF05884 ZYG-11_interact: Inte 41.5 2.5E+02 0.0055 28.3 10.1 118 98-220 140-262 (299)
37 COG0786 GltS Na+/glutamate sym 40.6 99 0.0022 32.5 7.4 181 171-373 1-196 (404)
38 PF03956 DUF340: Membrane prot 36.6 1E+02 0.0022 29.1 6.4 55 432-486 23-78 (191)
39 COG1296 AzlC Predicted branche 32.1 85 0.0018 30.7 5.1 48 88-135 9-56 (238)
40 TIGR00822 EII-Sor PTS system, 31.9 5.3E+02 0.011 25.7 12.3 30 190-219 161-190 (265)
41 PF07178 TraL: TraL protein; 30.3 1.7E+02 0.0036 24.1 6.0 44 462-505 18-62 (95)
42 PF01384 PHO4: Phosphate trans 29.8 5.4E+02 0.012 26.3 10.9 71 367-438 18-92 (326)
43 PRK12600 putative monovalent c 29.2 1.1E+02 0.0024 25.4 4.6 31 339-369 61-91 (94)
44 PRK04125 murein hydrolase regu 29.0 96 0.0021 27.8 4.5 27 272-298 20-46 (141)
45 COG4129 Predicted membrane pro 28.7 2.4E+02 0.0052 29.1 8.0 86 404-498 8-99 (332)
46 PF03904 DUF334: Domain of unk 27.8 4.3E+02 0.0093 25.6 8.8 83 408-502 144-228 (230)
47 TIGR00210 gltS sodium--glutama 26.6 3.9E+02 0.0084 28.3 9.3 40 180-219 8-51 (398)
48 PRK12657 putative monovalent c 24.6 1.4E+02 0.0029 25.2 4.4 31 339-369 65-95 (100)
49 COG3715 ManY Phosphotransferas 22.7 3.8E+02 0.0082 26.7 7.8 64 368-432 51-114 (265)
50 PF01102 Glycophorin_A: Glycop 22.0 1.5E+02 0.0032 25.9 4.3 20 479-499 70-89 (122)
51 PRK09410 ulaA PTS system ascor 21.3 8.6E+02 0.019 26.2 10.8 107 121-227 155-281 (452)
52 PRK09757 PTS system N-acetylga 21.0 8.3E+02 0.018 24.3 11.9 30 190-219 162-191 (267)
53 COG0628 yhhT Predicted permeas 20.4 6.7E+02 0.015 25.6 9.7 39 102-140 228-269 (355)
54 PF07613 DUF1576: Protein of u 20.2 7.2E+02 0.016 23.3 8.9 15 437-451 64-78 (183)
55 PF05145 AmoA: Putative ammoni 20.0 9.1E+02 0.02 24.5 10.4 42 384-426 85-126 (318)
No 1
>KOG0236 consensus Sulfate/bicarbonate/oxalate exchanger SAT-1 and related transporters (SLC26 family) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5.7e-91 Score=763.24 Aligned_cols=471 Identities=40% Similarity=0.650 Sum_probs=412.2
Q ss_pred cccccCCCCCChHHHHHHHhhhhc---ccchhhhhccC-CchhhHHHHHhhhcccccccccCCh-hhhHHHHHHHHHHHH
Q 010524 29 QWVLNAPKPPGFWQELVNSVRETF---FPHRRKFKNEH-DGFNLVFTFLHGLFPILHWCRNYKA-SKFRNDLMAGLTLAS 103 (508)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~~~l~~~~pi~~wl~~y~~-~~l~~DiiaGltv~~ 103 (508)
++.++.|++++..++.++..+++. ++. ++.+++. ++++++++.++++||+++|+|+|++ +++.+|++||+|+|+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~Pil~Wlp~Y~~~~~l~~DliaGltvg~ 92 (665)
T KOG0236|consen 14 RASVDTPTFDSSNEEEKSSVENTPTRKDKS-ERFRNKQRCSSNKFLRSLLSLLPILEWLPKYSLKEWLLGDLIAGLTVGS 92 (665)
T ss_pred cccccCCCCCcchhhhhccccCccccccHH-HHhhccccccHHHHHHHHHhhccHhhhhhcCCchhhchHHHhcCceeee
Confidence 344444445544444444444322 112 2333332 2444489999999999999999999 779999999999999
Q ss_pred HHHHHHHHHHHhhCCCcchhHHHhhhhhHHHHhhcCCCccccchhHHHHHHHHHHHHhhcCCCC---ChhhHHHHHHHHH
Q 010524 104 LCIPQSIGYATLAKLDPQYGLYTSVVPPLIYAVMGTSREIAIGPVAVVSLLLSSMIQKVQDPLA---NPIAYRNFVLTAT 180 (508)
Q Consensus 104 ~~iPq~iaya~laglpp~~GLyss~v~~liy~lfGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~---~~~~~~~~~~~~t 180 (508)
+++||+||||.+||+||+|||||+|+|+++|++||+|||+++||+|++|+|+++++++..++.. ++..+++.+.++|
T Consensus 93 l~VPQ~iaYa~la~lppiyGLYssf~~~~iY~~fGtsr~isiG~~av~sLmv~~~v~~~v~~~~~~~~~~~~i~va~~lt 172 (665)
T KOG0236|consen 93 LSVPQGLAYALLAGLPPIYGLYSSFFPPLIYAIFGTSRHVSIGPFAVVSLMVGTVVSQVVLSEAPSNDIATTIQVATTLT 172 (665)
T ss_pred eecchHHHHHHHcCCChHHHHHHHHHHHHHheeccCCCcccccHHHHHHHHHHHHHHHHHhccCCCcCcchhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999988887665433 4567789999999
Q ss_pred HHHHHHHHHHhhhhhhhHHhhccHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCCCCcHHHHHH---HHHhhCCCCCchhH
Q 010524 181 FFAGIFQASFGLFRLGFLIDILSHAAVVGFMAGAAIVIGLQQLKGLIGIPHFTNKTDAISVVK---AVWNSLHHTWSPQN 257 (508)
Q Consensus 181 ~l~Gvi~~~lgllrlG~l~~~ip~~vi~Gf~~gigl~I~~~Ql~~~lG~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~ 257 (508)
|++|++|++||++|+|++++|+|+|++.||++|+|++|+.+|+|.++|+++.+.+.+....+. +..++.++ . +.+
T Consensus 173 ~l~Giiq~~mG~lrLGfl~~~lS~~~l~GFt~gaa~~I~~sQlk~llGi~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~ 250 (665)
T KOG0236|consen 173 FLTGIIQLILGLLRLGFLVRFLSEPALSGFTTGAALHIVTSQLKVLLGITSFPRHSGPGSIVFIVFDLLANLPK-T-LAT 250 (665)
T ss_pred HHHHHHHHHHHHHhcChHHHHccHHHHhHhhhhhhhhhhHHhhHhhccccccCCCCCceeEEEeeHHhhhcccc-c-chh
Confidence 999999999999999999999999999999999999999999999999997666665544333 33444433 2 789
Q ss_pred HHHHHHHHHHHHHHHH-hhhchhhhcccccchhHHHHHHHHHHHHHhhcCCC-CeeEeeccccCCCCCcccccccchhhH
Q 010524 258 FILGCSFLCFILTTRY-LGRKKRKLFWLPAIAPLVSVILSTLFVFLTRADKH-GVKIVKHIDRGLNPSSVHQIQFHGQHV 335 (508)
Q Consensus 258 ~~ig~~~l~~ll~~~~-~~~~~~~~~~~p~~~~Li~ii~~t~i~~~~~~~~~-~v~~vg~ip~gl~~~~~p~~~~~~~~~ 335 (508)
++++++++++++.+|. ..++.+|.+|+|.|.++++++++|+++|.++.+.+ ...+++++|+|+|+|++|.+++..
T Consensus 251 ~~~~l~~l~~L~~~k~~~~~~~~k~~~v~~~~~li~vIi~T~~~~~~~~~~~~~~~~~~~i~~g~~~~~lp~~~~~~--- 327 (665)
T KOG0236|consen 251 LVLSLIFLVVLLLTKELNPKFKKKLFSVPIPFELIVVIIGTLISYIFRLEGRYGPIIVGEIPRGFPPPSLPPLSLTP--- 327 (665)
T ss_pred hhhHHHHHHHHHHHHHhhhhhcccceeecccHHHHHHHHHHHHHHHhccccccCCeeeccCCCCCCCCCCCChhhhH---
Confidence 9999999999999995 44445566669999999999999999999987764 556677999999999999887654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCCCChHHHHHhHHHHHHhhhcccCCCchhhHhHHhhhcCCcchHHHHH
Q 010524 336 GEVAKIGFVAAIVALAEAIAVGRSFASIKGYRLDGNKEMVAMGFMNIVGSFTSCYVATGSFSRSAVNFRAGCESTVSNIV 415 (508)
Q Consensus 336 ~~~~~~~~~~~iv~~~e~i~~~~~~a~~~~~~id~nqEL~a~G~~Ni~~s~fg~~p~~~s~srS~vn~~~G~~T~ls~iv 415 (508)
+.++.++.+++++++|+++++|+++++++|++|+||||+|+|++|++||||+|||++++++||++|.++|+|||++|++
T Consensus 328 -~~~~~~~~i~iva~~~~iai~k~fa~~~~y~vd~nqELiAlG~~Ni~sSff~~~p~tgs~sRSav~~~sG~~T~~s~i~ 406 (665)
T KOG0236|consen 328 -QVIPDAFAIAIVALLEHIAIGKSFASLHGYKVDSNQELIALGISNILSSFFGCYPTTGSFSRSAVNIKSGGRTQVAGIV 406 (665)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCeeCCChHHHHHHHHHHhhhhhceEcccchhhHHHHHhhcCCcchHHHHH
Confidence 5667778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHhhhhHHHHHHHHHHHhhc-cCChhHHHHHHccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010524 416 MAITVLISLEFFTRLLYYTPMAILASIIMSALPG-LIDFNEFYNIWKVDKLDFLACIGAFFGVLFASVEIGLLVAVIFLS 494 (508)
Q Consensus 416 ~a~~~ll~ll~l~pl~~~iP~~vLa~iii~~~~~-li~~~~~~~l~k~~~~d~~i~~~t~~~~~~~~v~~Gi~~gv~~s~ 494 (508)
+++++++++++++|+|+|+|+|+||+|+++++.+ ++++++++++||.+|.|+.+|+.|++++++.+++.|+++||++++
T Consensus 407 ~~~~vl~~l~~l~p~f~~iP~~vLaaIIi~a~~~~l~~~~~~~~lwr~~k~D~~~~~~t~~~~i~~~ve~Glligv~~s~ 486 (665)
T KOG0236|consen 407 SAALVLLALLFLGPLFYYIPKCVLAAIIISALIGMLIQLEDLKPLWRLSKIDLLIWVVTFFTTIFLSLEIGLLIGVAFSL 486 (665)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhHHHhhhhhhhhheeCCHHHHHHHHHHhheeeEehhhhhHHHHHHHHH
Confidence 9999999999999999999999999999999999 679999999999999999999999999999999999999999999
Q ss_pred HHHHhHhccCCC
Q 010524 495 CCLTNKKSEPNL 506 (508)
Q Consensus 495 l~~~~r~s~p~~ 506 (508)
+..+.|.++|+.
T Consensus 487 ~~ii~~~~~p~~ 498 (665)
T KOG0236|consen 487 FFIILRSQRPRI 498 (665)
T ss_pred HHHHHHhcCcch
Confidence 999999999975
No 2
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=100.00 E-value=4.7e-81 Score=680.94 Aligned_cols=427 Identities=50% Similarity=0.834 Sum_probs=399.9
Q ss_pred ccccccccCChhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhHHHHhhcCCCccccchhHHHHHHHHH
Q 010524 78 PILHWCRNYKASKFRNDLMAGLTLASLCIPQSIGYATLAKLDPQYGLYTSVVPPLIYAVMGTSREIAIGPVAVVSLLLSS 157 (508)
Q Consensus 78 pi~~wl~~y~~~~l~~DiiaGltv~~~~iPq~iaya~laglpp~~GLyss~v~~liy~lfGss~~~~~Gp~a~~sl~~~~ 157 (508)
|+++|+++|+++++++|++||+|++++.+||+||||.+||+||++|||++++|+++|++||+||++++||++.+|+++++
T Consensus 1 p~~~wl~~y~~~~l~~Di~aGltv~~~~iP~~~ayA~laglpp~~GLysa~~~~iv~alfGss~~~i~Gp~a~~sl~~~~ 80 (563)
T TIGR00815 1 PVLRWLPHYRLKKFKGDLMAGLTVGILLIPQAMAYAILAGLSPIYGLYTSFVPPFIYALFGTSRDIAIGPVAVMSLLLGS 80 (563)
T ss_pred ChhhhhhhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHhheecCCCcccCCHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhccHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCCCCc
Q 010524 158 MIQKVQDPLANPIAYRNFVLTATFFAGIFQASFGLFRLGFLIDILSHAAVVGFMAGAAIVIGLQQLKGLIGIPHFTNKTD 237 (508)
Q Consensus 158 ~v~~~~~~~~~~~~~~~~~~~~t~l~Gvi~~~lgllrlG~l~~~ip~~vi~Gf~~gigl~I~~~Ql~~~lG~~~~~~~~~ 237 (508)
++++.+.++....++.+.+.++++++|++|+++|++|+|++++|+|+||+.||++|+|++|+.+|+|.++|++..+...+
T Consensus 81 ~v~~~~~~~~~~~~~~~~a~~l~~l~Gi~~~~~g~lrlG~l~~~is~~Vi~Gf~~g~a~~i~~~Ql~~~~G~~~~~~~~~ 160 (563)
T TIGR00815 81 VIARVGLQYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGFLIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIFNTRTD 160 (563)
T ss_pred HHHHhcCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 99998754433346778889999999999999999999999999999999999999999999999999999986444566
Q ss_pred HHHHHHHHHhhCCC--CCchhHHHHHHHHHHHHHHHHHhhhchhhhcccccchhHHHHHHHHHHHHHhhcCCCCeeEeec
Q 010524 238 AISVVKAVWNSLHH--TWSPQNFILGCSFLCFILTTRYLGRKKRKLFWLPAIAPLVSVILSTLFVFLTRADKHGVKIVKH 315 (508)
Q Consensus 238 ~~~~~~~~~~~l~~--~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~p~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~ 315 (508)
.++.+.+.+.++++ .|||.+++++++++++++..|++.+|+++..+.+.|.+++++++++++++.++.++++++++|+
T Consensus 161 ~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~p~~li~vi~~~~~~~~~~~~~~~~~~~g~ 240 (563)
T TIGR00815 161 TLGVVISTWAGLPNTHNWNWCTLVIGLVLLLFLLYTKKLGKRNKKLLFAPAVAPLLVVILATLAVTIGLHKKQGVSILGH 240 (563)
T ss_pred hHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHhhhhccchhcccccHHHHHHHHHHHHHHHHccCCCCeEEEee
Confidence 77777777777765 1499999999999999998898888888877788889999999999999999888999999999
Q ss_pred cccCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCCCChHHHHHhHHHHHHhhhcccCCCch
Q 010524 316 IDRGLNPSSVHQIQFHGQHVGEVAKIGFVAAIVALAEAIAVGRSFASIKGYRLDGNKEMVAMGFMNIVGSFTSCYVATGS 395 (508)
Q Consensus 316 ip~gl~~~~~p~~~~~~~~~~~~~~~~~~~~iv~~~e~i~~~~~~a~~~~~~id~nqEL~a~G~~Ni~~s~fg~~p~~~s 395 (508)
+|.|+|.+..|.+ +++.+.++++.++.+++++++|+++++|++++++||++|+|||++++|++|+++|+|||+|++++
T Consensus 241 ip~g~p~~~~~~~--~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~~~d~n~El~a~G~~N~~~~~fg~~p~~~s 318 (563)
T TIGR00815 241 IPSGLSFFPPITL--DWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGYKIDANQELVAQGIANIVGSFFSCYPATGS 318 (563)
T ss_pred cCCCCCCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHhhHHHHHHHHhCccCCCCc
Confidence 9999987777755 44568889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHhHHhhhcCCcchHHHHHHHHHHHHHHHHhhHHHhhhhHHHHHHHHHHHhhccCChhHHHHHHccChhhHHHHHHHHH
Q 010524 396 FSRSAVNFRAGCESTVSNIVMAITVLISLEFFTRLLYYTPMAILASIIMSALPGLIDFNEFYNIWKVDKLDFLACIGAFF 475 (508)
Q Consensus 396 ~srS~vn~~~G~~T~ls~iv~a~~~ll~ll~l~pl~~~iP~~vLa~iii~~~~~li~~~~~~~l~k~~~~d~~i~~~t~~ 475 (508)
++||++|+++|+|||++++++++++++++++++|+++|+|+++||+++++++++|+|+++++++||.++.|+.+|+++++
T Consensus 319 ~srs~~~~~~G~~t~~a~i~~~~~~l~~~l~~~~~l~~iP~~~la~ili~~~~~l~~~~~~~~~~~~~~~d~~i~~~~~~ 398 (563)
T TIGR00815 319 LSRTAVNAKAGCRTQLSGVVTAIVVLLVLLVLTPLFYYIPQAALAAIIISAVRGLIDYKELYKLWKADKMDFVVWLVTFF 398 (563)
T ss_pred chHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHhcccCHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhccCCC
Q 010524 476 GVLFASVEIGLLVAVIFLSCCLTNKKSEPNL 506 (508)
Q Consensus 476 ~~~~~~v~~Gi~~gv~~s~l~~~~r~s~p~~ 506 (508)
.+++.|++.|+++|++++++.+++|.+||+.
T Consensus 399 ~~~~~~~~~Gi~vGv~~s~~~~~~~~~~p~~ 429 (563)
T TIGR00815 399 GVVFTSIEIGLLVGVALSAAFLLLRIARPRG 429 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCce
Confidence 9999999999999999999999999999874
No 3
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-76 Score=637.83 Aligned_cols=414 Identities=30% Similarity=0.504 Sum_probs=387.8
Q ss_pred HhhhcccccccccCChhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhHHHHhhcCCCccccchhHHHH
Q 010524 73 LHGLFPILHWCRNYKASKFRNDLMAGLTLASLCIPQSIGYATLAKLDPQYGLYTSVVPPLIYAVMGTSREIAIGPVAVVS 152 (508)
Q Consensus 73 l~~~~pi~~wl~~y~~~~l~~DiiaGltv~~~~iPq~iaya~laglpp~~GLyss~v~~liy~lfGss~~~~~Gp~a~~s 152 (508)
+.+.+|..+|.++|+.+++++|++||+|+|++++||+||||..||+||++|||++++++++|++||+||++++||++.++
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~Dl~AGltva~valP~ama~a~~aGv~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~ 82 (554)
T COG0659 3 LRSEIPTLKWLPYYFRSWLRGDLLAGLTVAAVALPLAMAFAIAAGVPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFA 82 (554)
T ss_pred chhhccHHHhccccchhhhHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHcCCccceeccchhhH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhccHHHHHHHHHHHHHHHHHHhhhhhhCCCCC
Q 010524 153 LLLSSMIQKVQDPLANPIAYRNFVLTATFFAGIFQASFGLFRLGFLIDILSHAAVVGFMAGAAIVIGLQQLKGLIGIPHF 232 (508)
Q Consensus 153 l~~~~~v~~~~~~~~~~~~~~~~~~~~t~l~Gvi~~~lgllrlG~l~~~ip~~vi~Gf~~gigl~I~~~Ql~~~lG~~~~ 232 (508)
++++..+.+.. +.+++.+.++++++|++|+++|++|+|++++|+|+||+.||++|+|++|+.+|++.++|++..
T Consensus 83 ~v~a~~i~~~~------~~g~~~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~~~Ql~~~~G~~~~ 156 (554)
T COG0659 83 VVLAAVIASLV------ETGLALAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLASK 156 (554)
T ss_pred HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 99999999654 356788999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCCcHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHhhhchhhhcccccchhHHHHHHHHHHHHHhhcC--CCCe
Q 010524 233 TNKTDAISVVKAVWNSLHHTWSPQNFILGCSFLCFILTTRYLGRKKRKLFWLPAIAPLVSVILSTLFVFLTRAD--KHGV 310 (508)
Q Consensus 233 ~~~~~~~~~~~~~~~~l~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~p~~~~Li~ii~~t~i~~~~~~~--~~~v 310 (508)
. +..++.+...+++..+ +||.+++++++++++++.++++.+|+| +++++++++|.++|.++.+ ++|
T Consensus 157 ~--~~~~~~~~~l~~~~~~-~~~~~~~lg~~~l~il~~~~~~~~~~P--------~~liaiv~~t~i~~~~~~~~~~~G- 224 (554)
T COG0659 157 V--SGFWAKVSALFTVLLT-INLATLLLGLLTLAILLFLPRLTPRIP--------SPLIALVLGTLIVWIFPLDSLRYG- 224 (554)
T ss_pred c--cchHHHHHHHHHhccc-ccHHHHHHHHHHHHHHHHccchhhhCC--------cHHHHHHHHHHHHHHhcCCchhcc-
Confidence 3 2367777778888888 999999999999999999876665543 7899999999999999876 466
Q ss_pred eEeeccccCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCCCChHHHHHhHHHHHHhhhccc
Q 010524 311 KIVKHIDRGLNPSSVHQIQFHGQHVGEVAKIGFVAAIVALAEAIAVGRSFASIKGYRLDGNKEMVAMGFMNIVGSFTSCY 390 (508)
Q Consensus 311 ~~vg~ip~gl~~~~~p~~~~~~~~~~~~~~~~~~~~iv~~~e~i~~~~~~a~~~~~~id~nqEL~a~G~~Ni~~s~fg~~ 390 (508)
++.|++|.++|++.+|+++ ++.+.+.++.++.+++++++|++.+++++++++|+++|.||||+|||++|+++++|||+
T Consensus 225 ~i~~~lp~~~~~~~~P~~~--~~~~~~l~~~al~la~lg~iesllta~~~~~~~~~~~d~nrELiaqGiaNi~sglfgg~ 302 (554)
T COG0659 225 EIPGSLPSGLPHFRLPNVS--LSLLLALLPYALALALLGLLESLLTAVSFDGMTGTKHDSNRELIAQGIANIASGLFGGI 302 (554)
T ss_pred cCcccCCcCCCcccCCCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHhhHHHHHHHHhCCc
Confidence 7899999999999999876 45688999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhHhHHhhhcCCcchHHHHHHHHHHHHHHHHhhHHHhhhhHHHHHHHHHHHhhccCChhHHHHHH-ccChhhHHH
Q 010524 391 VATGSFSRSAVNFRAGCESTVSNIVMAITVLISLEFFTRLLYYTPMAILASIIMSALPGLIDFNEFYNIW-KVDKLDFLA 469 (508)
Q Consensus 391 p~~~s~srS~vn~~~G~~T~ls~iv~a~~~ll~ll~l~pl~~~iP~~vLa~iii~~~~~li~~~~~~~l~-k~~~~d~~i 469 (508)
|+||+++||++|.++|+|||+|++++++++++++++++|+++|||+|+|++++++++++|+|++.+++++ |.+|.|+.+
T Consensus 303 p~~g~~srS~~nv~sGarT~lsgi~~a~~lll~l~~~~~~~~~IP~a~Laavli~v~~~l~~~~~~~~~~~~~~~~e~~v 382 (554)
T COG0659 303 PATGSISRSAINIKSGARTRLSGIIHAALLLLLLLFLAPLVSYIPLAALAAVLILVGWGLLDWSLLKPLLRKLPRGELLV 382 (554)
T ss_pred cccchhHHHHHHHHhCCcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhccHHHHHHHHhcCCchhHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998854 589999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccCCC
Q 010524 470 CIGAFFGVLFASVEIGLLVAVIFLSCCLTNKKSEPNL 506 (508)
Q Consensus 470 ~~~t~~~~~~~~v~~Gi~~gv~~s~l~~~~r~s~p~~ 506 (508)
++.|++++++.+++.|+.+|+++|++.+++|.+||..
T Consensus 383 ~~~t~~~tv~~~l~~GV~vGi~ls~~~~i~r~s~~~~ 419 (554)
T COG0659 383 LLTTALLTVFFDLVIGVVVGILLACLLFIRRISRPSI 419 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 9999999999999999999999999999999998753
No 4
>PRK11660 putative transporter; Provisional
Probab=100.00 E-value=2.2e-75 Score=636.60 Aligned_cols=408 Identities=24% Similarity=0.368 Sum_probs=371.9
Q ss_pred ccccccCChhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhHHHHhhcCCCccccchhHHHHHHHHHHH
Q 010524 80 LHWCRNYKASKFRNDLMAGLTLASLCIPQSIGYATLAKLDPQYGLYTSVVPPLIYAVMGTSREIAIGPVAVVSLLLSSMI 159 (508)
Q Consensus 80 ~~wl~~y~~~~l~~DiiaGltv~~~~iPq~iaya~laglpp~~GLyss~v~~liy~lfGss~~~~~Gp~a~~sl~~~~~v 159 (508)
.+|+|+|+++++++|++||+|++++.+||+||||.+||+||+|||||+++|+++|++||+||++++||++.+++++++.+
T Consensus 18 ~~wl~~y~~~~l~~D~iAGltv~~~~iPq~mayA~lag~pp~~GLysa~~~~~vyal~Gss~~~~~Gp~a~~~~~~~~~~ 97 (568)
T PRK11660 18 ACWKEKYTAARFTRDLIAGITVGIIAIPLAMALAIASGVPPQYGLYTAAVAGIVIALTGGSRFSVSGPTAAFVVILYPVS 97 (568)
T ss_pred HHHHhcCCHHhhhHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHhcCCCCcccChhHHHHHHHHHHH
Confidence 35999999999999999999999999999999999999999999999999999999999999999999999999998777
Q ss_pred HhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhccHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCCCCcHH
Q 010524 160 QKVQDPLANPIAYRNFVLTATFFAGIFQASFGLFRLGFLIDILSHAAVVGFMAGAAIVIGLQQLKGLIGIPHFTNKTDAI 239 (508)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~t~l~Gvi~~~lgllrlG~l~~~ip~~vi~Gf~~gigl~I~~~Ql~~~lG~~~~~~~~~~~ 239 (508)
++.+ .+.+..+++++|++|+++|++|+|++++|+|+||+.||++|+|++|+.+|++.++|++..+.+.+++
T Consensus 98 ~~~~---------~~~~~~~~~l~Gii~~l~gllrlG~l~~fip~pVi~Gf~~g~al~I~~~Ql~~~lG~~~~~~~~~~~ 168 (568)
T PRK11660 98 QQFG---------LAGLLVATLMSGIILILMGLARLGRLIEYIPLSVTLGFTSGIGIVIATLQIKDFFGLQMAHVPEHYL 168 (568)
T ss_pred HHhh---------HHHHHHHHHHHHHHHHHHHHHhhhHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHH
Confidence 6543 3345678999999999999999999999999999999999999999999999999998654456788
Q ss_pred HHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHhhhchhhhcccccchhHHHHHHHHHHHHHhhcCCCCeeEeec----
Q 010524 240 SVVKAVWNSLHHTWSPQNFILGCSFLCFILTTRYLGRKKRKLFWLPAIAPLVSVILSTLFVFLTRADKHGVKIVKH---- 315 (508)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~p~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~---- 315 (508)
+.+.++++++++ +||.+.++++.++++++.++++.+|. |.++++++++|++++.++...++++.+|+
T Consensus 169 ~~l~~~~~~l~~-~~~~~~~~~~~~l~lll~~~~~~~~i--------P~~li~iiv~t~~~~~~~~~~~~v~~vg~~~~~ 239 (568)
T PRK11660 169 EKVGALFQALPT-INWGDALIGIVTLGVLILWPRLKIRL--------PGHLPALLAGTAVMGVLNLLGGHVATIGSRFHY 239 (568)
T ss_pred HHHHHHHHhhcc-CCHHHHHHHHHHHHHHHHHHhhcccC--------chHHHHHHHHHHHHHHHhccCCCceeecccccc
Confidence 888889999999 99999999999999988876554433 36799999999999999877777777775
Q ss_pred ----------cccCCCCCcccc---------cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCCCChHHHH
Q 010524 316 ----------IDRGLNPSSVHQ---------IQFHGQHVGEVAKIGFVAAIVALAEAIAVGRSFASIKGYRLDGNKEMVA 376 (508)
Q Consensus 316 ----------ip~gl~~~~~p~---------~~~~~~~~~~~~~~~~~~~iv~~~e~i~~~~~~a~~~~~~id~nqEL~a 376 (508)
+|+++|++.+|. .+++++.+.+.++.++.+++++++|++.+++.+++++++++|.||||++
T Consensus 240 ~~~~g~~~~~ip~~~p~~~~p~~~~~~~~~~~~~~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n~EL~a 319 (568)
T PRK11660 240 VLADGSQGNGIPPLLPQFVLPWNLPGADGQPFTLSWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSANSELVG 319 (568)
T ss_pred cccccccccCCCCCCCCCCCCccccccccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHH
Confidence 666677665552 2245667788899999999999999999999999999999999999999
Q ss_pred HhHHHHHHhhhcccCCCchhhHhHHhhhcCCcchHHHHHHHHHHHHHHHHhhHHHhhhhHHHHHHHHHHHhhccCChhHH
Q 010524 377 MGFMNIVGSFTSCYVATGSFSRSAVNFRAGCESTVSNIVMAITVLISLEFFTRLLYYTPMAILASIIMSALPGLIDFNEF 456 (508)
Q Consensus 377 ~G~~Ni~~s~fg~~p~~~s~srS~vn~~~G~~T~ls~iv~a~~~ll~ll~l~pl~~~iP~~vLa~iii~~~~~li~~~~~ 456 (508)
+|++|++||+|||+|++++++||++|.++|+|||++++++++++++++++++|+++|+|+++||+++++++++|+|+++.
T Consensus 320 ~G~aNi~~~~fgg~p~~~s~srSa~n~~aGarT~la~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~m~~~~~~ 399 (568)
T PRK11660 320 QGLGNIVAPFFGGITATAAIARSAANVRAGATSPISAVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNMSEAHKV 399 (568)
T ss_pred HhHHHHHHHHhCcccccchHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHc-cChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhccCC
Q 010524 457 YNIWK-VDKLDFLACIGAFFGVLFASVEIGLLVAVIFLSCCLTNKKSEPN 505 (508)
Q Consensus 457 ~~l~k-~~~~d~~i~~~t~~~~~~~~v~~Gi~~gv~~s~l~~~~r~s~p~ 505 (508)
+++|| .+|.|+.+|+.+++.+++++++.|+++|++++++.+++|.+++.
T Consensus 400 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~~Gi~~s~~~~~~~~~~~~ 449 (568)
T PRK11660 400 VDLLRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFMRRIAEMT 449 (568)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 88777 68899999999999999999999999999999999999998875
No 5
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=4.5e-51 Score=409.13 Aligned_cols=280 Identities=36% Similarity=0.631 Sum_probs=256.6
Q ss_pred HhhhhhhhHHhhccHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCCCCcHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHH
Q 010524 190 FGLFRLGFLIDILSHAAVVGFMAGAAIVIGLQQLKGLIGIPHFTNKTDAISVVKAVWNSLHHTWSPQNFILGCSFLCFIL 269 (508)
Q Consensus 190 lgllrlG~l~~~ip~~vi~Gf~~gigl~I~~~Ql~~~lG~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ig~~~l~~ll 269 (508)
||++|+|++++|+|+||+.||++|+|++|+.+|+|.++|++..+..++..+.+.++++.+++.+||.++++++++++++.
T Consensus 1 lGllrlG~l~~~ip~pVi~Gf~~g~ai~I~~~Ql~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 80 (280)
T PF00916_consen 1 LGLLRLGFLVRFIPRPVISGFLAGIAILIIFSQLPNLLGIPVVPSHEGLFSFIRALFQLISTITNWPTLAIGLVALVFLL 80 (280)
T ss_pred CccccccHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhccchhhhhhhhHHHHHHh
Confidence 58999999999999999999999999999999999999998544445555666666666655248999999999999999
Q ss_pred HHHHhhhchhhhcccccchhHHHHHHHHHHHHHhhcCCCCeeEeeccccCCCCCcccccccchhhHHHHHHHHHHHHHHH
Q 010524 270 TTRYLGRKKRKLFWLPAIAPLVSVILSTLFVFLTRADKHGVKIVKHIDRGLNPSSVHQIQFHGQHVGEVAKIGFVAAIVA 349 (508)
Q Consensus 270 ~~~~~~~~~~~~~~~p~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~ip~gl~~~~~p~~~~~~~~~~~~~~~~~~~~iv~ 349 (508)
..+++.++++++++.+.|.+++++++++++++..+.+.++++.+|++|.++|++.+|+.+++++.+.+.++.++.+++++
T Consensus 81 ~~~~~~~~~~~~~~~~~p~~li~vv~~~~~~~~~~~~~~~v~~~~~i~~~lp~~~~p~~~~~~~~~~~~~~~a~~ia~v~ 160 (280)
T PF00916_consen 81 IIRLLPKRLPSRFWPPIPAPLIVVVLGTLLSWLFLLDKYGVAIVGEIPSGLPPPSLPSFDISWSLILDLLPTALAIAIVG 160 (280)
T ss_pred hhhhhhhhccccccccccccceeeehhhhhhhhhhhccccccccccccccCccccCcccccccccccccchhHHHHHHHH
Confidence 99888877777777888899999999999999998888899999999999999999954455566888899999999999
Q ss_pred HHHHHHHHHHHhhhcCCcCCCChHHHHHhHHHHHHhhhcccCCCchhhHhHHhhhcCCcchHHHHHHHHHHHHHHHHhhH
Q 010524 350 LAEAIAVGRSFASIKGYRLDGNKEMVAMGFMNIVGSFTSCYVATGSFSRSAVNFRAGCESTVSNIVMAITVLISLEFFTR 429 (508)
Q Consensus 350 ~~e~i~~~~~~a~~~~~~id~nqEL~a~G~~Ni~~s~fg~~p~~~s~srS~vn~~~G~~T~ls~iv~a~~~ll~ll~l~p 429 (508)
++|++.++|+++++++|++|.|||++++|++|+++|+|||+|++++++||++|+++|+|||++++++++++++++++++|
T Consensus 161 ~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s~~~~~~~~l~~l~~~~~ 240 (280)
T PF00916_consen 161 FIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLSGLISALFVLLVLLFLAP 240 (280)
T ss_pred HHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeehhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHhhccCChhHHHHHHccChhhHHH
Q 010524 430 LLYYTPMAILASIIMSALPGLIDFNEFYNIWKVDKLDFLA 469 (508)
Q Consensus 430 l~~~iP~~vLa~iii~~~~~li~~~~~~~l~k~~~~d~~i 469 (508)
+++|+|+++||+++++++++|+|+++++++||.+|.|+++
T Consensus 241 ~l~~iP~~~La~ili~~~~~l~~~~~~~~~~~~~~~d~~i 280 (280)
T PF00916_consen 241 LLAYIPKAVLAAILIVVGISLIDWSSLRRLWRVSKADFLI 280 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhcCChhheEC
Confidence 9999999999999999999999999999999999999863
No 6
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.7e-30 Score=266.68 Aligned_cols=392 Identities=18% Similarity=0.237 Sum_probs=305.1
Q ss_pred HHHHhhhcccccccccCChhhhHHHHHHHHHHHHHHHHHHHHHHH--------hhCCCcchh----HHHhhhhhHHHHhh
Q 010524 70 FTFLHGLFPILHWCRNYKASKFRNDLMAGLTLASLCIPQSIGYAT--------LAKLDPQYG----LYTSVVPPLIYAVM 137 (508)
Q Consensus 70 ~~~l~~~~pi~~wl~~y~~~~l~~DiiaGltv~~~~iPq~iaya~--------laglpp~~G----Lyss~v~~liy~lf 137 (508)
++.++++|...| +.+++|+|++||+|+++ +|+|-. -+|+|...- ..+++++.+.++++
T Consensus 3 ~~~~~~~F~l~~-----~~t~vrtEiiAGlTTFl-----tM~YIl~VnP~IL~~ag~~~~av~~AT~l~a~~gs~~mgl~ 72 (436)
T COG2252 3 KGDLDRFFKLKE-----HGTTVRTEVIAGLTTFL-----TMAYIVFVNPQILGAAGMPVGAVFVATCLAAAIGSIAMGLY 72 (436)
T ss_pred hhHHHHHhCccc-----cCchHHHHHHHHHHHHH-----HHHHhheecHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Confidence 356778888777 77889999999999998 666643 267775433 45578999999999
Q ss_pred cCCCccccchhHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhh-HHhhccHHHHHHHHHHHHH
Q 010524 138 GTSREIAIGPVAVVSLLLSSMIQKVQDPLANPIAYRNFVLTATFFAGIFQASFGLFRLGF-LIDILSHAAVVGFMAGAAI 216 (508)
Q Consensus 138 Gss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~t~l~Gvi~~~lgllrlG~-l~~~ip~~vi~Gf~~gigl 216 (508)
++.|......++.++.+..+++..++- .||.++.+.|++|+++++++++++++ ++|.+|+++..|..+|+|+
T Consensus 73 An~P~alapgmglnAfFaftvv~~~gi-------~wq~AL~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGl 145 (436)
T COG2252 73 ANLPIALAPGMGLNAFFAFTVVLGMGL-------SWQVALGAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGL 145 (436)
T ss_pred HcCchhhcchhhHHHHHHHHHHHhcCC-------cHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHH
Confidence 999988888899999999999998762 38999999999999999999999976 9999999999999999999
Q ss_pred HHHHHhhhhhhCCCCCCCCCcHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHhhhchhhhcccccchhHHHHHHH
Q 010524 217 VIGLQQLKGLIGIPHFTNKTDAISVVKAVWNSLHHTWSPQNFILGCSFLCFILTTRYLGRKKRKLFWLPAIAPLVSVILS 296 (508)
Q Consensus 217 ~I~~~Ql~~~lG~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~p~~~~Li~ii~~ 296 (508)
+|..-.++ -.|+-.. ++. ..-.+++ .+.+.+.+++..+.+...... +|.|. +.+++++..
T Consensus 146 Fia~IgL~-~~Givv~-~~~--------tlv~LG~-~~~p~vll~i~G~~l~~~L~~--~~i~G-------aili~i~~~ 205 (436)
T COG2252 146 FIALIGLK-NAGIVVA-NPA--------TLVALGD-FTSPGVLLAILGLLLIIVLVS--RKIKG-------AILIGILVT 205 (436)
T ss_pred HHHHHHHh-hCCeEEe-cCc--------ceEEeec-CCCchHHHHHHHHHHHHHHHH--hhccH-------hhhHHHHHH
Confidence 99988887 4555211 111 1223333 333445555555444443322 45554 668999999
Q ss_pred HHHHHHhhcCCCCeeEeeccccCCCCCcccccccch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC------CcCC
Q 010524 297 TLFVFLTRADKHGVKIVKHIDRGLNPSSVHQIQFHG-QHVGEVAKIGFVAAIVALAEAIAVGRSFASIKG------YRLD 369 (508)
Q Consensus 297 t~i~~~~~~~~~~v~~vg~ip~gl~~~~~p~~~~~~-~~~~~~~~~~~~~~iv~~~e~i~~~~~~a~~~~------~~id 369 (508)
+++++..+.........+..|+-. +.+.++|+.. ......++..+...++.++|++++....+++-| +..|
T Consensus 206 t~~g~~~g~~~~~~~~~~~~p~~~--~~~~~~d~~~~~~~~~~~~~if~f~~~~~FD~~GTl~gv~~~ag~~~~~g~~~~ 283 (436)
T COG2252 206 TILGIILGIDVHFGGLVGAPPSLS--PIFGQLDLSGNLSLAAFAPVIFTFFFVDLFDTLGTLIGVASKAGLLDKNGKMPR 283 (436)
T ss_pred HHHHHHhcccccccccccCCCCcc--chhhHhhhccchhhHHHHHHHHHHHHHHHhcchHHHHHHHHhcCCcCCCCCccc
Confidence 999999875433222233333221 1222444443 334455667788899999999988888776533 2357
Q ss_pred CChHHHHHhHHHHHHhhhcccCCCchhhHhHHhhhcCCcchHHHHHHHHHHHHHHHHhhHHHhhhhHHHHHHHHHHHhhc
Q 010524 370 GNKEMVAMGFMNIVGSFTSCYVATGSFSRSAVNFRAGCESTVSNIVMAITVLISLEFFTRLLYYTPMAILASIIMSALPG 449 (508)
Q Consensus 370 ~nqEL~a~G~~Ni~~s~fg~~p~~~s~srS~vn~~~G~~T~ls~iv~a~~~ll~ll~l~pl~~~iP~~vLa~iii~~~~~ 449 (508)
.+|.+.+++++.++|+++|+.|++ +|-+|+...+.|+||.++.++.++++++. +|++|+...+|..+.++++++++..
T Consensus 284 ~~~al~~D~v~t~~ga~~GtS~~t-~yIESaaGva~GgrTGltavv~g~lFl~~-lf~~Pl~~~vP~~AtapaLi~vG~l 361 (436)
T COG2252 284 IGKALLADSVATVVGALFGTSTVT-AYIESAAGVAAGGRTGLTAVVTGLLFLLS-LFFSPLAALVPGYATAPALIIVGAL 361 (436)
T ss_pred cchHHHHhHHHHHHHHhcCCcchh-hhhhcccccccccccccHHHHHHHHHHHH-HHHHHHHHhCcHhhhhHHHHHHHHH
Confidence 889999999999999999999955 69999999999999999999999999999 6999999999999999999999999
Q ss_pred cCChhHHHHHHccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------hHhccCCCC
Q 010524 450 LIDFNEFYNIWKVDKLDFLACIGAFFGVLFASVEIGLLVAVIFLSCCLT--------NKKSEPNLW 507 (508)
Q Consensus 450 li~~~~~~~l~k~~~~d~~i~~~t~~~~~~~~v~~Gi~~gv~~s~l~~~--------~r~s~p~~~ 507 (508)
|.. .+.++||.|+...+.+|++.++..+.+.+.-|+.++++.|. ||+.||.+|
T Consensus 362 M~~-----~v~~id~~d~~ea~PaF~tiv~mplTySIa~Gia~Gfi~y~i~k~~~g~~k~v~~~~~ 422 (436)
T COG2252 362 MLS-----SVKQIDWSDFTEAVPAFLTIVMMPLTYSIADGIAFGFISYVILKVFTGRWKEVNPLIW 422 (436)
T ss_pred HHh-----hhccCCchhhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHHhhchHHH
Confidence 886 67789999999999999999998888888888888888775 666676554
No 7
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=99.96 E-value=1.1e-26 Score=244.43 Aligned_cols=322 Identities=15% Similarity=0.137 Sum_probs=238.8
Q ss_pred HHHHHHHHHHHHHhhCCCc-------chhHHHhhhhhHHHH----hhcCCCccccchhHHHHHHHHHHHHhhcCCCCChh
Q 010524 102 ASLCIPQSIGYATLAKLDP-------QYGLYTSVVPPLIYA----VMGTSREIAIGPVAVVSLLLSSMIQKVQDPLANPI 170 (508)
Q Consensus 102 ~~~~iPq~iaya~laglpp-------~~GLyss~v~~liy~----lfGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~ 170 (508)
+.+.+|.-++- ..|+|+ +..+.++.+..+++. .+|++..+..||....-..+.....+
T Consensus 11 ~~i~~p~i~~~--a~gl~~~~~~~~i~at~l~sgi~tllq~~~~~~~G~~~P~~~g~s~a~~~~~~~~~~~--------- 79 (406)
T TIGR03173 11 GAVAVPLIVGG--ALGLSAEQTAYLISADLFACGIATLIQTLGIGPFGIRLPVVQGVSFAAVGPMIAIGAG--------- 79 (406)
T ss_pred HHHHHHHHHHh--hcCCCHHHHHHHHHHHHHHHHHHHHHHhccccccCCccceeecCcHHHHHHHHHHhhh---------
Confidence 45666766653 258887 467888999999996 67888899999966332222111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhccHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCCCCcHHHHHHHHHhhCC
Q 010524 171 AYRNFVLTATFFAGIFQASFGLFRLGFLIDILSHAAVVGFMAGAAIVIGLQQLKGLIGIPHFTNKTDAISVVKAVWNSLH 250 (508)
Q Consensus 171 ~~~~~~~~~t~l~Gvi~~~lgllrlG~l~~~ip~~vi~Gf~~gigl~I~~~Ql~~~lG~~~~~~~~~~~~~~~~~~~~l~ 250 (508)
..++.+..+.+++|++++++|. +++++.|++|+.++..++..+|+.+...++++..|.... .+
T Consensus 80 ~~~~~~~ga~~v~Gii~illg~-~~~~l~~~iPp~v~G~~i~~IGl~l~~~~~~~~~g~~~~----------------~~ 142 (406)
T TIGR03173 80 GGLGAIFGAVIVAGLFVILLAP-FFSKLVRFFPPVVTGTVITLIGLSLMPVAINWAAGGAGA----------------PD 142 (406)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHCCcHHHHHHHHHHHHHHHHHHHHHhccCCCc----------------cc
Confidence 2378889999999999999994 789999999998888888999999998888877654310 01
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhhchhhhcccccchhHHHHHHHHHHHHHhhcCCCCeeEeecccc-CCCC---Cccc
Q 010524 251 HTWSPQNFILGCSFLCFILTTRYLGRKKRKLFWLPAIAPLVSVILSTLFVFLTRADKHGVKIVKHIDR-GLNP---SSVH 326 (508)
Q Consensus 251 ~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~p~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~ip~-gl~~---~~~p 326 (508)
. .++.++.+++.+++++++.++..|+..| .++.++++++++++++.++..+. +.+++.|. .+|. +..|
T Consensus 143 ~-~~~~~~~l~l~~l~~~il~~~~~~~~~~-----~~aiLi~ivvg~iva~~~g~~~~--~~i~~~~~~~~P~~~~~~~P 214 (406)
T TIGR03173 143 F-GSPQNLGLALLTLVIILLLNRFGKGFLR-----SIAVLLGLVVGTIVAAALGMVDF--SGVAEAPWFALPTPFHFGAP 214 (406)
T ss_pred c-cchHHHHHHHHHHHHHHHHHHHhhhHHH-----HhHHHHHHHHHHHHHHHhcCCCc--hhhccCCeeeCCCCCcCCCC
Confidence 1 3556677888777777666544444322 23789999999999999875321 12232221 2222 2334
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCC---CChHHHHHhHHHHHHhhhcccCCCchhhH-hHHh
Q 010524 327 QIQFHGQHVGEVAKIGFVAAIVALAEAIAVGRSFASIKGYRLD---GNKEMVAMGFMNIVGSFTSCYVATGSFSR-SAVN 402 (508)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~iv~~~e~i~~~~~~a~~~~~~id---~nqEL~a~G~~Ni~~s~fg~~p~~~s~sr-S~vn 402 (508)
++ +.. .+...+.+++++++|+++..++.+++.|++.| .|||+.++|++|+++++||++|.++ ++| ++++
T Consensus 215 ~f--~~~----~~~~~~~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~-~~~~~~~~ 287 (406)
T TIGR03173 215 TF--DLV----AILTMIIVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTS-FSQNVGLV 287 (406)
T ss_pred ee--CHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcc-hhhhHHHH
Confidence 33 322 22334567889999999999999988887765 4799999999999999999999886 666 5688
Q ss_pred hhcCCcchHHHHHHHHHHHHHHHH--hhHHHhhhhHHHHHHHHHHHhhccCChhHHHHHHccChhhH
Q 010524 403 FRAGCESTVSNIVMAITVLISLEF--FTRLLYYTPMAILASIIMSALPGLIDFNEFYNIWKVDKLDF 467 (508)
Q Consensus 403 ~~~G~~T~ls~iv~a~~~ll~ll~--l~pl~~~iP~~vLa~iii~~~~~li~~~~~~~l~k~~~~d~ 467 (508)
..+|+|||.+++++|+++++..++ ++++++++|+++++++.+ +.++++....++.++|.+++|.
T Consensus 288 ~~tg~~sr~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l-~~~~~i~~~g~~~l~~~~~~~~ 353 (406)
T TIGR03173 288 QLTGVKSRYVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGL-VMFGMVAASGIRILSKVDFDRR 353 (406)
T ss_pred HHhCCCchHhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHhCcccCc
Confidence 889999999999999999888776 899999999999999877 4899998888888887766543
No 8
>PRK10720 uracil transporter; Provisional
Probab=99.94 E-value=2e-24 Score=227.82 Aligned_cols=358 Identities=15% Similarity=0.113 Sum_probs=255.3
Q ss_pred HHHHHHHHHHHHHhhCCCcchhHHHhhhhhHHHHhhcCCC-ccccchh-HHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q 010524 102 ASLCIPQSIGYATLAKLDPQYGLYTSVVPPLIYAVMGTSR-EIAIGPV-AVVSLLLSSMIQKVQDPLANPIAYRNFVLTA 179 (508)
Q Consensus 102 ~~~~iPq~iaya~laglpp~~GLyss~v~~liy~lfGss~-~~~~Gp~-a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~ 179 (508)
+.+.+|.-+ |+++...+..+.++.++..+++++| .+..||. +..+.+.... .. .++.+..+
T Consensus 30 ~~i~~Pli~------gl~~~~~l~~sGi~TliQ~~~~g~rlP~~~G~sfa~i~~~~~~~--~~---------~~~~~lga 92 (428)
T PRK10720 30 ATVLVPILF------HINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLLLL--PL---------GYEVALGG 92 (428)
T ss_pred HHHHHHhhc------CCCHHHHHHHHHHHHHHHHHhccCccceEEeCcHHHHHHHHHHH--Hc---------cHHHHHHH
Confidence 556666633 8889889999999999999887544 5667773 3332332211 11 26788999
Q ss_pred HHHHHHHHHHHhhh--hh--hhHHhhccHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCCCCcHHHHHHHHHhhCCCCCch
Q 010524 180 TFFAGIFQASFGLF--RL--GFLIDILSHAAVVGFMAGAAIVIGLQQLKGLIGIPHFTNKTDAISVVKAVWNSLHHTWSP 255 (508)
Q Consensus 180 t~l~Gvi~~~lgll--rl--G~l~~~ip~~vi~Gf~~gigl~I~~~Ql~~~lG~~~~~~~~~~~~~~~~~~~~l~~~~~~ 255 (508)
.+++|+++++++++ |+ +++.+++|+.+++.+++.+|+.+...-++. .|..... . +. .++
T Consensus 93 v~v~Glv~ills~~~~~~g~~~l~~~fPp~v~G~~i~lIGl~L~~~~~~~-~g~~~~~--~-------------~~-~~~ 155 (428)
T PRK10720 93 FIMCGVLFCLVALIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGM-AGLLPAE--G-------------QT-PDS 155 (428)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHhCChHHHHHHHHHHHHHhHHHHHhh-ccccCCC--C-------------cc-cch
Confidence 99999999999997 34 468999999999999999999998666642 2321100 0 11 456
Q ss_pred hHHHHHHHHHHHHHHHHHhhhchhhhcccccchhHHHHHHHHHHHHHhhcCCCCeeEeec-cccCCCCCcccccccchhh
Q 010524 256 QNFILGCSFLCFILTTRYLGRKKRKLFWLPAIAPLVSVILSTLFVFLTRADKHGVKIVKH-IDRGLNPSSVHQIQFHGQH 334 (508)
Q Consensus 256 ~~~~ig~~~l~~ll~~~~~~~~~~~~~~~p~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~-ip~gl~~~~~p~~~~~~~~ 334 (508)
.++.+++.+++++++..+..|++.|.. +.++++++++++++.++..+ .+.+++ .+.++|.+..|++ +...
T Consensus 156 ~~~~lalv~l~iil~~~~~~kg~~~~~-----~iLigIvvG~ila~~lG~~d--~~~v~~a~~~~lP~~~~P~f--d~~~ 226 (428)
T PRK10720 156 KTIIISMVTLAVTVLGSVLFRGFLAII-----PILIGVLVGYALSFAMGMVD--TTPIIEAHWFALPTFYTPRF--EWFA 226 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHh-----HHHHHHHHHHHHHHHhcCCC--HHHhhcCccccCCCCCCCcC--cHHH
Confidence 678888888777776554445544332 56999999999999987532 222332 2345555555544 4333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC----cCCCChHHHHHhHHHHHHhhhcccCCCchhhHhHHhhhcCCcch
Q 010524 335 VGEVAKIGFVAAIVALAEAIAVGRSFASIKGY----RLDGNKEMVAMGFMNIVGSFTSCYVATGSFSRSAVNFRAGCEST 410 (508)
Q Consensus 335 ~~~~~~~~~~~~iv~~~e~i~~~~~~a~~~~~----~id~nqEL~a~G~~Ni~~s~fg~~p~~~s~srS~vn~~~G~~T~ 410 (508)
+...++ .+++.++|+++..++.++..++ +.|.|||+.++|++|+++|+||++|++++..+..+...+|.++|
T Consensus 227 il~l~~----~~lv~~~EsiG~~~a~~~~~~~~~~~~~~~~r~l~adGlatii~glfG~~p~tty~en~g~ia~T~v~sr 302 (428)
T PRK10720 227 ILTILP----AALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYST 302 (428)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHhhCCCCCCCccccchHhhhhHHHHHHHhcCCCCccccccccceeeecccchh
Confidence 444444 4445667887777766655543 34789999999999999999999998886666777777888888
Q ss_pred HHHHHHHHHHHHHHHH--hhHHHhhhhHHHHHHHHHHHhhccCChhHHHHHHc--cChhh---HHHH-----------HH
Q 010524 411 VSNIVMAITVLISLEF--FTRLLYYTPMAILASIIMSALPGLIDFNEFYNIWK--VDKLD---FLAC-----------IG 472 (508)
Q Consensus 411 ls~iv~a~~~ll~ll~--l~pl~~~iP~~vLa~iii~~~~~li~~~~~~~l~k--~~~~d---~~i~-----------~~ 472 (508)
.....+++++++..++ ++++++.+|.+|++|+.+ +.+++++..+++.+|+ .+..| ..+. ..
T Consensus 303 ~v~~~a~~~li~lg~~pk~~a~ia~iP~pVlgg~~i-~~fg~i~~~Gi~~l~~~~~~~~~~~n~~i~~~~l~~g~~~~~~ 381 (428)
T PRK10720 303 WVIGGAAIIAILLSCVGKLAAAIQAIPLPVMGGVSL-LLYGVIGASGIRVLIESKVDYNKAQNLILTSVILIIGVSGAKV 381 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHHccCCCCcccchhHHHHHHHHHHHHHHH
Confidence 8888788887777754 999999999999999998 6999999999999965 33221 1211 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhccCCCC
Q 010524 473 AFFGVLFASVEIGLLVAVIFLSCCLTNKKSEPNLW 507 (508)
Q Consensus 473 t~~~~~~~~v~~Gi~~gv~~s~l~~~~r~s~p~~~ 507 (508)
++..++..++..|..+|+.++++...+|+-||+=+
T Consensus 382 ~~~~~~~~gi~~g~~~ai~Lnlll~~~~~~~~~~~ 416 (428)
T PRK10720 382 NIGAAELKGMALATIVGIGLSLIFKLISKLRPEEE 416 (428)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhcccccccCCcc
Confidence 22233346788999999999999999999998744
No 9
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=99.94 E-value=2.1e-24 Score=227.28 Aligned_cols=326 Identities=16% Similarity=0.151 Sum_probs=246.8
Q ss_pred HHHHHHHHHHHHHHhhCCCc-------chhHHHhhhhhHHHHhhcCCC---ccccchh-HHHHHHHHHHHHhhcCCCCCh
Q 010524 101 LASLCIPQSIGYATLAKLDP-------QYGLYTSVVPPLIYAVMGTSR---EIAIGPV-AVVSLLLSSMIQKVQDPLANP 169 (508)
Q Consensus 101 v~~~~iPq~iaya~laglpp-------~~GLyss~v~~liy~lfGss~---~~~~Gp~-a~~sl~~~~~v~~~~~~~~~~ 169 (508)
.+.+.+|.-++-+. +++ +..+..+.++.++.++.++.+ ....|+. +..+.... ....
T Consensus 20 ~~~i~~p~iv~~~~---l~~~~~~~li~at~~~sgi~Tllq~~~~~~~~~lp~~~G~sfa~i~~~~~---~~~~------ 87 (415)
T TIGR00801 20 GGTVLVPLLVGLAP---LSAEQTQYLVSISLLTSGIGTLLQLFRTGGQIGLPSYLGSSFAFVSPMIA---IGSG------ 87 (415)
T ss_pred HHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHHHHHHHHHhhhcCceeeeeeecCcHHHHHHHHH---HHhc------
Confidence 45677777777555 344 356888899999999988766 5556665 44443332 1111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhh--hh--hhHHhhccHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCCCCcHHHHHHHH
Q 010524 170 IAYRNFVLTATFFAGIFQASFGLF--RL--GFLIDILSHAAVVGFMAGAAIVIGLQQLKGLIGIPHFTNKTDAISVVKAV 245 (508)
Q Consensus 170 ~~~~~~~~~~t~l~Gvi~~~lgll--rl--G~l~~~ip~~vi~Gf~~gigl~I~~~Ql~~~lG~~~~~~~~~~~~~~~~~ 245 (508)
..++.+....+.+|+++.+++.+ |+ +++.+++|+.|...++.++|+.+....++++.|........
T Consensus 88 -~~~~~~~g~~i~~gl~~~ll~~~~~~~~~~~i~~~~Pp~v~g~iv~~IGl~L~~i~l~~~~g~~~~~~~~--------- 157 (415)
T TIGR00801 88 -LGIPAIMGALIATGLVYTLLSLLIKKLGPRWLMKLFPPVVTGPVVMLIGLSLIPVAVKMAAGGEAAMSSA--------- 157 (415)
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCchhHHHhHHHHHHHHHHHHHHHhccCCCccccc---------
Confidence 11567889999999999999985 44 46899999999999999999999999999987765311110
Q ss_pred HhhCCCCCchhHHHHHHHHHHHHHHHHHhhhchhhhcccccchhHHHHHHHHHHHHHhhcCCCCeeEeeccc-cCCCCCc
Q 010524 246 WNSLHHTWSPQNFILGCSFLCFILTTRYLGRKKRKLFWLPAIAPLVSVILSTLFVFLTRADKHGVKIVKHID-RGLNPSS 324 (508)
Q Consensus 246 ~~~l~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~p~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~ip-~gl~~~~ 324 (508)
+. .++.++.+++.+++++++.++..|+.-| .++.++++++++++++.++..+.. -+.+.| .++|.+.
T Consensus 158 --~~---~~~~~~~vg~~~l~~~vl~~~~~~g~~~-----~~aiLigiv~g~i~a~~lg~~~~~--~v~~~~~~~lP~~~ 225 (415)
T TIGR00801 158 --TY---GSLENLGVAFVVLALIILLNRFGKGFLK-----SISILIGILVGYILALFMGIVDFS--PVIDAPWFSLPTPF 225 (415)
T ss_pred --cc---CchhhHHHHHHHHHHHHHHHHHHhhHHH-----HHHHHHHHHHHHHHHHHcCCccch--hhccCcccccCCcc
Confidence 01 2456688888888877776654444322 237899999999999998743221 122333 1344443
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCC----CChHHHHHhHHHHHHhhhcccCCCchhhHhH
Q 010524 325 VHQIQFHGQHVGEVAKIGFVAAIVALAEAIAVGRSFASIKGYRLD----GNKEMVAMGFMNIVGSFTSCYVATGSFSRSA 400 (508)
Q Consensus 325 ~p~~~~~~~~~~~~~~~~~~~~iv~~~e~i~~~~~~a~~~~~~id----~nqEL~a~G~~Ni~~s~fg~~p~~~s~srS~ 400 (508)
.|..+|+.. .+...+.+++++++|+++..++.+++.|++.| .|||+.++|++|+++|+||++|.+++..++.
T Consensus 226 ~~g~~f~~~----~~~~~~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~sen~g 301 (415)
T TIGR00801 226 TFGPSFEWP----AILTMLPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQNIG 301 (415)
T ss_pred CCCceecHH----HHHHHHHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcchhhhhe
Confidence 332234433 34444668899999999999999999888764 4799999999999999999999999888999
Q ss_pred HhhhcCCcchHHHHHHHHHHHHHHHH--hhHHHhhhhHHHHHHHHHHHhhccCChhHHHHHHccChh
Q 010524 401 VNFRAGCESTVSNIVMAITVLISLEF--FTRLLYYTPMAILASIIMSALPGLIDFNEFYNIWKVDKL 465 (508)
Q Consensus 401 vn~~~G~~T~ls~iv~a~~~ll~ll~--l~pl~~~iP~~vLa~iii~~~~~li~~~~~~~l~k~~~~ 465 (508)
++..+|++||.+..++|+++++..++ ++++++++|.++++++.+ +.++++....++.+++.+.+
T Consensus 302 ~~~~T~~~sr~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l-~~~~~i~~~gi~~l~~~~~~ 367 (415)
T TIGR00801 302 VIALTRVASRWVIVGAAVILIALGFFPKIAALITSIPSPVLGGASI-VMFGMIAASGIRILIRNKLD 367 (415)
T ss_pred eeeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHHHhCccC
Confidence 99999999999999999999999999 999999999999999998 68999988899899876554
No 10
>PF13792 Sulfate_tra_GLY: Sulfate transporter N-terminal domain with GLY motif
Probab=99.93 E-value=2.3e-26 Score=186.17 Aligned_cols=83 Identities=52% Similarity=1.006 Sum_probs=80.4
Q ss_pred cccccccccCCh-hhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhHHHHhhcCCCccccchhHHHHHHH
Q 010524 77 FPILHWCRNYKA-SKFRNDLMAGLTLASLCIPQSIGYATLAKLDPQYGLYTSVVPPLIYAVMGTSREIAIGPVAVVSLLL 155 (508)
Q Consensus 77 ~pi~~wl~~y~~-~~l~~DiiaGltv~~~~iPq~iaya~laglpp~~GLyss~v~~liy~lfGss~~~~~Gp~a~~sl~~ 155 (508)
||+++|+++|++ +++++|++||+|++++.+||+||||.+||+||++|||++++++++|++||+||++++||++.+|+++
T Consensus 1 ~P~l~wl~~y~~k~~~~~D~~aGltva~~~iPq~~a~A~lAg~pp~~GLy~a~~~~liyalfG~s~~~~~Gp~a~~s~l~ 80 (84)
T PF13792_consen 1 FPILQWLPRYSWKSNLRGDLLAGLTVALVAIPQGMAYALLAGVPPIYGLYAAIIPPLIYALFGSSRHMIVGPTAAMSLLI 80 (84)
T ss_pred CCchhhcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeHHHHHHHHHHhhccCCCccccChHHHHHHHH
Confidence 799999999997 8899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 010524 156 SSMI 159 (508)
Q Consensus 156 ~~~v 159 (508)
++++
T Consensus 81 ~~~v 84 (84)
T PF13792_consen 81 ASVV 84 (84)
T ss_pred HHhC
Confidence 8753
No 11
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=99.90 E-value=7e-21 Score=200.80 Aligned_cols=328 Identities=15% Similarity=0.138 Sum_probs=218.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhHHHH-hhcCCCccccchhHHHH-HHHHHHHHhhcCCCCC
Q 010524 91 FRNDLMAGLTLASLCIPQSIGYATLAKLDPQYGLYTSVVPPLIYA-VMGTSREIAIGPVAVVS-LLLSSMIQKVQDPLAN 168 (508)
Q Consensus 91 l~~DiiaGltv~~~~iPq~iaya~laglpp~~GLyss~v~~liy~-lfGss~~~~~Gp~a~~s-l~~~~~v~~~~~~~~~ 168 (508)
+.++++.|+.-.+...--.+....+-|+++...+.++.++.++.. .+|+.-.+..|+..... .+.. .. ... ..+
T Consensus 29 ~~~~~~~GlQh~lam~~~~v~~Plilgl~~~~tl~~sGi~TllQ~~~~G~rlP~v~G~sf~f~~~~~~-~~-~~~--~~~ 104 (429)
T TIGR03616 29 AAQTIVMGLQHAVAMFGATVLMPLLMGFDPNLTILMSGIGTLLFFLITGGRVPSYLGSSAAFVGAVIA-AT-GYN--GQG 104 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHhCCCceeEEcCcHHHHHHHHH-HH-hhc--ccC
Confidence 467788888777644333333344457899999999999999997 57877778888865443 3322 11 111 111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhhhh----hhHHhhccHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCCCCcHHHHHHH
Q 010524 169 PIAYRNFVLTATFFAGIFQASFGLFRL----GFLIDILSHAAVVGFMAGAAIVIGLQQLKGLIGIPHFTNKTDAISVVKA 244 (508)
Q Consensus 169 ~~~~~~~~~~~t~l~Gvi~~~lgllrl----G~l~~~ip~~vi~Gf~~gigl~I~~~Ql~~~lG~~~~~~~~~~~~~~~~ 244 (508)
++.+.+.+..+++++|++++++|++++ +++.+++|.-|..-.+..+|+.++...+++..|-
T Consensus 105 ~~~~~~~a~ga~iv~G~i~~llg~~~~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~vg~~~~~~~--------------- 169 (429)
T TIGR03616 105 TNPNIALALGGIIACGLVYAAIGLVVMRTGTRWIERLMPPVVTGAVVMAIGLNLAPIAVKSVSAS--------------- 169 (429)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHhcccc---------------
Confidence 223567788999999999999999876 5688888988888888888888876555542110
Q ss_pred HHhhCCCCCchhHHHHHHHHHHHHHHHHHhhhchhhhcccccchhHHHHHHHHHHHHHhh----cC-CCCeeEe-ecccc
Q 010524 245 VWNSLHHTWSPQNFILGCSFLCFILTTRYLGRKKRKLFWLPAIAPLVSVILSTLFVFLTR----AD-KHGVKIV-KHIDR 318 (508)
Q Consensus 245 ~~~~l~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~p~~~~Li~ii~~t~i~~~~~----~~-~~~v~~v-g~ip~ 318 (508)
+. .+|. ++.+++.+++...+.|+.-|.. +.++++++++++++.+. .. ..+.+.+ +.-+.
T Consensus 170 ---~~---~~~~----al~tl~~i~l~~l~~~~~l~~~-----avLiGivvG~iva~~l~~~~g~~~~vd~s~v~~a~~~ 234 (429)
T TIGR03616 170 ---GF---DSWM----AVLTILCIGAVAVFTRGMLQRL-----LILVGLIAAYLAYFILTNVFGLGKAVDFSPISQAAWF 234 (429)
T ss_pred ---cc---ccHH----HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhhhcCCCccccCcccccCccc
Confidence 01 1222 2222222222223334332322 67999999999988652 11 1222222 23333
Q ss_pred CCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCCC--ChHHHHHhHHHHHHhhhcccCCCchh
Q 010524 319 GLNPSSVHQIQFHGQHVGEVAKIGFVAAIVALAEAIAVGRSFASIKGYRLDG--NKEMVAMGFMNIVGSFTSCYVATGSF 396 (508)
Q Consensus 319 gl~~~~~p~~~~~~~~~~~~~~~~~~~~iv~~~e~i~~~~~~a~~~~~~id~--nqEL~a~G~~Ni~~s~fg~~p~~~s~ 396 (508)
++|++..|+++ .+.+ ...+..+++.++|+++..++.++..+++.|+ |||++++|++|+++|++|+.|.+.+.
T Consensus 235 ~lP~~~~p~f~--~~~i----l~~~~~~lv~~~esiG~~~a~~~~~~~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~~ 308 (429)
T TIGR03616 235 GLPNFHTPVFN--ANAM----LLIAPVALILVAENLGHFKAVAGMTGRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTYA 308 (429)
T ss_pred cCCcCCCceEc--HHHH----HHHHHHHHHHHHHhhHHHHHHHHHhCCCCCchhccchhhhhHHHHHHHhcCCCCCccee
Confidence 56656555443 3222 3334457888999999999988888777776 79999999999999999999977665
Q ss_pred hHhHHhhhcCCcchHHHHHHHHHHHHHHHH--hhHHHhhhhHHHHHHHHHHHhhccCChhHHHHH
Q 010524 397 SRSAVNFRAGCESTVSNIVMAITVLISLEF--FTRLLYYTPMAILASIIMSALPGLIDFNEFYNI 459 (508)
Q Consensus 397 srS~vn~~~G~~T~ls~iv~a~~~ll~ll~--l~pl~~~iP~~vLa~iii~~~~~li~~~~~~~l 459 (508)
.+..+...+|.++|......++++++..++ ++.+++.+|.+|++|+.+ +.+++++..+++.+
T Consensus 309 en~g~i~~T~v~SR~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i-~~fg~i~~~Gi~~l 372 (429)
T TIGR03616 309 ENIGVMAVTKVYSTLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASI-VVFGLIAVAGARIW 372 (429)
T ss_pred eeeeeeeecCcchHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 555666666666666666666655554432 334999999999999998 69999988888743
No 12
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=99.85 E-value=8.5e-19 Score=183.64 Aligned_cols=345 Identities=17% Similarity=0.102 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----hCC--C----cchhHHHhhhhhHHHHh-hcCCCccccchhHHHHHHHHHHHH
Q 010524 92 RNDLMAGLTLASLCIPQSIGYATL----AKL--D----PQYGLYTSVVPPLIYAV-MGTSREIAIGPVAVVSLLLSSMIQ 160 (508)
Q Consensus 92 ~~DiiaGltv~~~~iPq~iaya~l----agl--p----p~~GLyss~v~~liy~l-fGss~~~~~Gp~a~~sl~~~~~v~ 160 (508)
++++++|++..+...+-.+....+ .|+ + ....+..+.+..++.++ +|..-.+..||... .+.....+.
T Consensus 1 ~~~i~~glQ~~l~m~~~~iv~P~il~~~~g~~~~~~~li~at~l~sgi~Tllq~~~~g~~lpl~~G~s~~-~~~~~~~~~ 79 (389)
T PF00860_consen 1 GKEILLGLQHFLAMFYIIIVVPLILAAAFGLDADTAALISATFLVSGIATLLQGLPAGHRLPLVPGPSFA-FIFAFMIVI 79 (389)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHTTTS-----------HHHHHHHHHHHHHHHHHHTTT-----EEE-GG-GHHHHHGGG
T ss_pred CccHHHHHHHHHHHHHHHHHhHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcCCCceecccccchh-hhhhhhccc
Confidence 468899999887554444443332 122 1 23567778999999999 66666667776432 111121111
Q ss_pred hhcCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhh-hHHhhccHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCCCCcHH
Q 010524 161 KVQDPLANPIAYRNFVLTATFFAGIFQASFGLFRLG-FLIDILSHAAVVGFMAGAAIVIGLQQLKGLIGIPHFTNKTDAI 239 (508)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~t~l~Gvi~~~lgllrlG-~l~~~ip~~vi~Gf~~gigl~I~~~Ql~~~lG~~~~~~~~~~~ 239 (508)
.. ..+....++.+..+.+++|++++++++++++ ++.+++|+.|..++..++|+.+....+++..|..... +.
T Consensus 80 g~---~~~~~~~~~~~~g~~~i~gi~~~~l~~~g~~~~l~~~~pp~v~g~v~~~IGl~L~~~~~~~~~~~~~~~--~~-- 152 (389)
T PF00860_consen 80 GM---AESGGYGLQAALGAVLISGILFILLGLTGLRKRLRRLFPPVVKGAVVLLIGLSLAPIGLKNAGGIWGNP--DG-- 152 (389)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHTT-SH-HHHHH--HHHHHHHHHHHHHHHHHHHHHHTTSS---B--TT--
T ss_pred cc---ccchhhchhhhhhHHHHHHHHHHHHHHhchHHHHHHHhChhheEeeEeeehhhhhhhHhhccccccccc--cc--
Confidence 11 0122344688899999999999999999985 7999999999999999999999999999888875321 10
Q ss_pred HHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHhhhchhhhcccccchhHHHHHHHHHHHHHhhcCCCCeeEeeccccC
Q 010524 240 SVVKAVWNSLHHTWSPQNFILGCSFLCFILTTRYLGRKKRKLFWLPAIAPLVSVILSTLFVFLTRADKHGVKIVKHIDRG 319 (508)
Q Consensus 240 ~~~~~~~~~l~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~p~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~ip~g 319 (508)
... .++.....++..+++.+..+...++..+.. +.++++++++++++..+..+..-. +. .
T Consensus 153 ---------~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----ailigi~~g~i~~~~~g~~~~~~~-~~----~ 212 (389)
T PF00860_consen 153 ---------LLV-GDGKNLGLAVLTLLFILLLSLFLKGFLRKG-----AILIGIIAGWIVAAILGVVDFSPS-VS----S 212 (389)
T ss_dssp ----------B----HHHHHHHHHHHHHHHHHHHSSSTTTTTH-----HHHHHHHHHHHHHHHHHHTTSSH--HH----H
T ss_pred ---------ccc-ccccccccccccchhhhhhhhhhhhhcccc-----cchhhhhhhhhhhhcccccccCcc-cc----c
Confidence 000 234445555555555555544434333322 678999999999999873222110 11 1
Q ss_pred CCCCcccc-cccchh-hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc----CCCChHHHHHhHHHHHHhhhcccCCC
Q 010524 320 LNPSSVHQ-IQFHGQ-HVGEVAKIGFVAAIVALAEAIAVGRSFASIKGYR----LDGNKEMVAMGFMNIVGSFTSCYVAT 393 (508)
Q Consensus 320 l~~~~~p~-~~~~~~-~~~~~~~~~~~~~iv~~~e~i~~~~~~a~~~~~~----id~nqEL~a~G~~Ni~~s~fg~~p~~ 393 (508)
-|+..+|+ ++|..+ .....+...+...++.++|+++.-.+.++..|.+ .+.||.+.++|++|+++++||+.|.+
T Consensus 213 ~~~~~~p~~~~~g~p~f~~~~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G~~~~t 292 (389)
T PF00860_consen 213 APWFSLPSPFPFGWPSFDPGAILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFGTSPTT 292 (389)
T ss_dssp S-SS--------------HHHHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT---EE
T ss_pred ccccccccccccccccccHHHHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhcCCCCc
Confidence 12222221 112211 2334455556678888899988777776655544 44789999999999999999999977
Q ss_pred chhhHhHHhhhcCCcchHHHHHHHHHHHHHHHH--hhHHHhhhhHHHHHHHHHHHhhccCChhHHHHHHccChh
Q 010524 394 GSFSRSAVNFRAGCESTVSNIVMAITVLISLEF--FTRLLYYTPMAILASIIMSALPGLIDFNEFYNIWKVDKL 465 (508)
Q Consensus 394 ~s~srS~vn~~~G~~T~ls~iv~a~~~ll~ll~--l~pl~~~iP~~vLa~iii~~~~~li~~~~~~~l~k~~~~ 465 (508)
.+..+...-..+|+++|.++..++++.++..++ ++|++..+|.+++++..++ .++++....++.+-+.+..
T Consensus 293 ~~~en~g~i~~t~v~Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv-~~g~i~~~gi~~i~~~~~~ 365 (389)
T PF00860_consen 293 TYSENAGGIAATGVASRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLV-LFGMIMMSGIRNIDWVDLD 365 (389)
T ss_dssp E-HHHHHHHHHHTB--HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHH-HHHHHHHHHHHHHHHTTS-
T ss_pred cccccchhhhhhccccceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHH-HHHHHHHHHhHhheecccC
Confidence 766666666778899999999999888887765 8999999999998888665 3444434555555544444
No 13
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=99.83 E-value=2.5e-17 Score=172.99 Aligned_cols=335 Identities=13% Similarity=0.137 Sum_probs=232.1
Q ss_pred HHHHHHHHHHHHHHhhCCCcc-------hhHHHhhhhhHHHHhhcCCCccccchhHHH-HHHHHHHHHhhcCCCCChhhH
Q 010524 101 LASLCIPQSIGYATLAKLDPQ-------YGLYTSVVPPLIYAVMGTSREIAIGPVAVV-SLLLSSMIQKVQDPLANPIAY 172 (508)
Q Consensus 101 v~~~~iPq~iaya~laglpp~-------~GLyss~v~~liy~lfGss~~~~~Gp~a~~-sl~~~~~v~~~~~~~~~~~~~ 172 (508)
.+.+.+|.-++= ..|+++. ..+..+.+..++=+.+|+.-.+.-||.... ..+..-.... ...+......
T Consensus 23 ~~~i~vPliva~--a~gl~~~~~~~li~~~l~~sGIaTllQ~~~G~rlPiv~G~Sf~~~~~~~~i~~~~-~~~g~~~~~~ 99 (433)
T PRK11412 23 CNTVVVPPTLLS--AFQLPQSSLLTLTQYAFLATALACFAQAFCGHRRAIMEGPGGLWWGTILTITLGE-ASRGTPINDI 99 (433)
T ss_pred HHHHHHHHHHHH--HcCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeeeeCCchHHHHHHHHHHhcc-cccCccHHHH
Confidence 345667766653 4677774 567778889999999999999999996543 3222221111 0000001111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhh-hhhHHhhccHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCCCCcHHHHHHHHHhhCCC
Q 010524 173 RNFVLTATFFAGIFQASFGLFR-LGFLIDILSHAAVVGFMAGAAIVIGLQQLKGLIGIPHFTNKTDAISVVKAVWNSLHH 251 (508)
Q Consensus 173 ~~~~~~~t~l~Gvi~~~lgllr-lG~l~~~ip~~vi~Gf~~gigl~I~~~Ql~~~lG~~~~~~~~~~~~~~~~~~~~l~~ 251 (508)
........+++|++++++|..+ ++++.|++|.-|..-++.-+|+.++...++++.|.+.... .+ .++
T Consensus 100 ~g~l~g~~i~~g~~~~~lg~~~~~~~l~r~fpPvV~G~vv~lIGlsL~~~a~~~~~G~~~~~~-~~-----------~~~ 167 (433)
T PRK11412 100 ATSLAVGIALSGVVTILIGFSGLGHRLARLFTPMVMVVFMLLLGAQLTTIFFKGMLGLPFGIA-DP-----------NGK 167 (433)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhhhHhHHHHHHhhHHHHHHHhcCCCccCc-cc-----------ccc
Confidence 2222346799999999999998 7999999999999999999999999999999988621100 00 011
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhhchhhhcccccchhHHHHHHHHHHHH-HhhcCCCCeeEeeccc-cCCCCCcccccc
Q 010524 252 TWSPQNFILGCSFLCFILTTRYLGRKKRKLFWLPAIAPLVSVILSTLFVF-LTRADKHGVKIVKHID-RGLNPSSVHQIQ 329 (508)
Q Consensus 252 ~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~p~~~~Li~ii~~t~i~~-~~~~~~~~v~~vg~ip-~gl~~~~~p~~~ 329 (508)
+++.++.+++.++.+++....+.|++-|.+ +.+++++++++++. .++.|.. .+++.+ ..+| +..|. +
T Consensus 168 -~~~~~~~~a~~~l~~il~~~~~~~g~~~~~-----svLiGiv~G~v~a~~~~g~d~~---~v~~a~w~~~p-fG~P~-~ 236 (433)
T PRK11412 168 -IQLPPFGLSVAVMCLVLAMIIFLPQRIARY-----SLLVGTIVGWILWAFCFPSSHS---LSGELHWQWFP-LGSGG-A 236 (433)
T ss_pred -cchHHHHHHHHHHHHHHHHHHHhhhHHHHH-----HHHHHHHHHHHHHHHHhCCCcc---hhccCCceeec-CCCCC-c
Confidence 334566677777777666665555554433 77899999999854 4444222 222222 1122 22332 2
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc----CCCChHHHHHhHHHHHHhhhcccCCCchhhHhHHhhhc
Q 010524 330 FHGQHVGEVAKIGFVAAIVALAEAIAVGRSFASIKGYR----LDGNKEMVAMGFMNIVGSFTSCYVATGSFSRSAVNFRA 405 (508)
Q Consensus 330 ~~~~~~~~~~~~~~~~~iv~~~e~i~~~~~~a~~~~~~----id~nqEL~a~G~~Ni~~s~fg~~p~~~s~srS~vn~~~ 405 (508)
|++.. +...+..+++...|+++.-++.++..+++ .+.+|.+.++|++|+++++||+.|.+....+..+-..+
T Consensus 237 F~~~~----il~~~~~~lv~~~e~iG~~~a~~~~~~~~~~~~~~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~T 312 (433)
T PRK11412 237 LEPGI----ILTAVITGLVNISNTYGAIRGTDVFYPQQGAGNTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQT 312 (433)
T ss_pred cCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhhc
Confidence 44333 33344456677777776666666555443 35689999999999999999999998877888899999
Q ss_pred CCcchHHHHHHHHHHHHHHHH--hhHHHhhhhHHHHHHHHHHHhhccCChhHHHHHHccChhh
Q 010524 406 GCESTVSNIVMAITVLISLEF--FTRLLYYTPMAILASIIMSALPGLIDFNEFYNIWKVDKLD 466 (508)
Q Consensus 406 G~~T~ls~iv~a~~~ll~ll~--l~pl~~~iP~~vLa~iii~~~~~li~~~~~~~l~k~~~~d 466 (508)
|+++|......|+++++.-++ ++.++..||.+|++|+.++ .++++-...++.+.|.+.++
T Consensus 313 gV~SR~v~~~aa~ilillgl~PK~~alia~IP~pVlGg~~~~-~Fg~I~~~Gi~~l~~~~~~~ 374 (433)
T PRK11412 313 GDYRRRSFIYGSVMCLLVALIPALTRLFCSIPLPVSSAVMLV-SYLPLLGSALVFSQQITFTA 374 (433)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHHHHHHHHhCCCCc
Confidence 999999999999999999877 8889999999999999877 78887767777777766544
No 14
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=99.80 E-value=1.6e-17 Score=172.33 Aligned_cols=308 Identities=16% Similarity=0.134 Sum_probs=223.7
Q ss_pred hhHHHhhhhhHHHHhh----cCCCccccch-hHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhh
Q 010524 122 YGLYTSVVPPLIYAVM----GTSREIAIGP-VAVVSLLLSSMIQKVQDPLANPIAYRNFVLTATFFAGIFQASFGLFRLG 196 (508)
Q Consensus 122 ~GLyss~v~~liy~lf----Gss~~~~~Gp-~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~t~l~Gvi~~~lgllrlG 196 (508)
+.|.+|.++.+++.+- |..-....|. ++..+.+... .++.+ +....+....+.+|++.++++.+ ++
T Consensus 57 ~~l~~~GiaTllq~~~~~~~g~~lP~~lG~sFafi~p~i~~-~~~~g-------~~~~~~~G~ii~ag~~~~li~~~-~~ 127 (451)
T COG2233 57 ADLLASGIGTLLQLLGTGPGGSGLPSYLGSSFAFVAPMIAI-GGTTG-------DGIAALLGGIIAAGLVYFLISPI-VK 127 (451)
T ss_pred HHHHHHHHHHHHHHhhccCcccCCCeeEechHHHHHHHHHH-HhccC-------CchHHHHHHHHHHHHHHHHHHHH-HH
Confidence 4599999999999982 2222334444 3343433332 12211 11455678899999999999977 44
Q ss_pred -hHHhhccHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCCCCcHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHhh
Q 010524 197 -FLIDILSHAAVVGFMAGAAIVIGLQQLKGLIGIPHFTNKTDAISVVKAVWNSLHHTWSPQNFILGCSFLCFILTTRYLG 275 (508)
Q Consensus 197 -~l~~~ip~~vi~Gf~~gigl~I~~~Ql~~~lG~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ig~~~l~~ll~~~~~~ 275 (508)
|+.|++|.-|.+-++.-+|+.++...++++.|.....+..++ .+..++.+++.++++.++..++.
T Consensus 128 ~~l~rlfPPvVtG~Vi~~IGlsL~~vai~~~~G~~~~~~~~~~--------------~~~~~l~la~~tl~~il~~~~f~ 193 (451)
T COG2233 128 IRLARLFPPVVTGPVVLVIGLSLAPVAINMAGGGPGAAGNPDF--------------GSLENLGLALVTLLIILLINRFG 193 (451)
T ss_pred HHHHHhCCCceEEeEeeeehhhhHHHHHHHhhCCCCCCCCccc--------------CchhHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999987632221111 45667888888888777766555
Q ss_pred hchhhhcccccchhHHHHHHHHHHHHHhhcCCCCeeEeeccc-cCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHH
Q 010524 276 RKKRKLFWLPAIAPLVSVILSTLFVFLTRADKHGVKIVKHID-RGLNPSSVHQIQFHGQHVGEVAKIGFVAAIVALAEAI 354 (508)
Q Consensus 276 ~~~~~~~~~p~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~ip-~gl~~~~~p~~~~~~~~~~~~~~~~~~~~iv~~~e~i 354 (508)
|.+-|.. +.++++++++++++.++..+.. -+.+-| .++|.|..+...|++..+..+. .++++.+.|++
T Consensus 194 ~g~~~~i-----~ILiGlv~G~~la~~~G~vdf~--~v~~a~w~~~P~~~~fg~~F~~~ail~m~----~v~iV~~~E~~ 262 (451)
T COG2233 194 KGFLRRI-----PILIGLVVGYLLALFMGMVDFS--GVAEAPWFALPTPFYFGMAFDWGAILTML----PVAIVTIVEHT 262 (451)
T ss_pred hhHHHHH-----HHHHHHHHHHHHHHHhCCcCcc--ccccCceeeCCcccCCCeeecHHHHHHHH----HHHHHHHHHHh
Confidence 5544432 6799999999999999832221 122222 2355554443355554444444 45677778887
Q ss_pred HHHHHHhhhcCCcCC----CChHHHHHhHHHHHHhhhcccCCCchhhHhHHhhhcCCcchHHHHHHHHHHHHHHHH--hh
Q 010524 355 AVGRSFASIKGYRLD----GNKEMVAMGFMNIVGSFTSCYVATGSFSRSAVNFRAGCESTVSNIVMAITVLISLEF--FT 428 (508)
Q Consensus 355 ~~~~~~a~~~~~~id----~nqEL~a~G~~Ni~~s~fg~~p~~~s~srS~vn~~~G~~T~ls~iv~a~~~ll~ll~--l~ 428 (508)
+--++.++..+++.| .+|.++++|++++++++||++|.|+.-.+..+-..+|.+||......|++.++.-++ ++
T Consensus 263 G~i~A~~~itg~~~~~~~~l~rg~~aDGlat~iag~fg~~p~TtfaqNiGvv~lT~v~Sr~V~~~aavili~lgl~pk~~ 342 (451)
T COG2233 263 GDITATGEITGRDLDGKPRLRRGLLADGLATLIAGLFGGFPNTTFAQNIGVVALTGVYSRYVIAGAAVILILLGLFPKFG 342 (451)
T ss_pred hhhhhHHhHhCCcCccCcccccceeeccHHHHHHHhcCCCCCCchhhceeeeeeccCChhHHHHHHHHHHHHHHhhHHHH
Confidence 776666666655544 568899999999999999999999877788889999999999999999999888876 88
Q ss_pred HHHhhhhHHHHHHHHHHHhhccCChhHHHHHHccCh
Q 010524 429 RLLYYTPMAILASIIMSALPGLIDFNEFYNIWKVDK 464 (508)
Q Consensus 429 pl~~~iP~~vLa~iii~~~~~li~~~~~~~l~k~~~ 464 (508)
.++..||.+|++|+.++ .++++....++.+-|.+.
T Consensus 343 al~~sIP~pVlGGa~iv-mFG~Ia~sGir~l~~~~~ 377 (451)
T COG2233 343 ALIQSIPSPVLGGAMLV-LFGMIAASGIRILIRNKV 377 (451)
T ss_pred HHHHhCChhhhhHHHHH-HHHHHHHHHHHHHHhccc
Confidence 99999999999999876 899998888877766544
No 15
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=99.52 E-value=2.1e-11 Score=125.82 Aligned_cols=340 Identities=18% Similarity=0.188 Sum_probs=197.7
Q ss_pred HHHHHHHHHHHHHHHH--HHHH--HHhhCCCcc---hhHHH----hhhhhHHHHhhcCCCccccchhHHHHHHHHHHHHh
Q 010524 93 NDLMAGLTLASLCIPQ--SIGY--ATLAKLDPQ---YGLYT----SVVPPLIYAVMGTSREIAIGPVAVVSLLLSSMIQK 161 (508)
Q Consensus 93 ~DiiaGltv~~~~iPq--~iay--a~laglpp~---~GLys----s~v~~liy~lfGss~~~~~Gp~a~~sl~~~~~v~~ 161 (508)
.-+.||+...++-.-- .+=+ +.-.|+++. ..+.+ +.+..++.++.= ...++.++...-+.++....++
T Consensus 22 s~~~aG~va~lvg~~~~~~iv~~a~~~~g~s~aq~~swl~a~~~~~Gl~ti~lS~~~-r~Pi~~awStPGaAll~~~~~~ 100 (395)
T TIGR00843 22 PTLIAGFLAVLIGYAGPAAIFFQAAIKAGASTAMIIGWITAIGIAAAVSGIFLSIRF-KTPVLTAWSAPGAALLVTGFPG 100 (395)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCeeeecCchHHHHHHHhcCC
Confidence 4566787776543211 1111 224566664 23333 334444545444 3456667665555555433332
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHHHhhhh-hhhHHhhccHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCCCCcHHH
Q 010524 162 VQDPLANPIAYRNFVLTATFFAGIFQASFGLFR-LGFLIDILSHAAVVGFMAGAAIVIGLQQLKGLIGIPHFTNKTDAIS 240 (508)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~t~l~Gvi~~~lgllr-lG~l~~~ip~~vi~Gf~~gigl~I~~~Ql~~~lG~~~~~~~~~~~~ 240 (508)
.. +..+..+-+++|++.+++|+.+ ++|+++++|+++..|.++|+.+.....-++.+
T Consensus 101 ~~---------~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLAGIlL~f~l~~~~a~-------------- 157 (395)
T TIGR00843 101 IS---------LNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLAGILFQFGLGAFAAL-------------- 157 (395)
T ss_pred CC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH--------------
Confidence 21 4567788999999999999999 59999999999999999999887654322211
Q ss_pred HHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHhhhchhhhcccccchhHHHHHHHHHHHHHhhcCCCCeeEeeccccCC
Q 010524 241 VVKAVWNSLHHTWSPQNFILGCSFLCFILTTRYLGRKKRKLFWLPAIAPLVSVILSTLFVFLTRADKHGVKIVKHIDRGL 320 (508)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~p~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~ip~gl 320 (508)
.+ . ..++...++..++.| |+ .|.++.++++++++++++..+..+.+ +....+
T Consensus 158 ---------~~--~---pll~~~mll~~l~~~----r~-----~Pr~avl~aLlvG~iva~~~G~~~~~-----~~~~~l 209 (395)
T TIGR00843 158 ---------DG--L---FLICFSMLLCWLASK----AF-----APRYAMIAALICGIAFSFALGDMNPT-----DLDFKI 209 (395)
T ss_pred ---------HH--h---HHHHHHHHHHHHHHH----Hh-----cchHHHHHHHHHHHHHHHHhcCCCcc-----cccccc
Confidence 11 1 112322233333332 22 12237789999999999887632211 111123
Q ss_pred CCC--cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCCCChHHHHHhHHHHHHhhhcccC------C
Q 010524 321 NPS--SVHQIQFHGQHVGEVAKIGFVAAIVALAEAIAVGRSFASIKGYRLDGNKEMVAMGFMNIVGSFTSCYV------A 392 (508)
Q Consensus 321 ~~~--~~p~~~~~~~~~~~~~~~~~~~~iv~~~e~i~~~~~~a~~~~~~id~nqEL~a~G~~Ni~~s~fg~~p------~ 392 (508)
+.| ..|++++. ..+..++-..++.+.....-+-...+.+||+.+.|+-+...|++|+++++|||++ +
T Consensus 210 ~~p~~~~P~fs~~-----a~~~l~lPl~~vtm~~qnlpgiavl~aaGy~~p~~~~~~~tGl~sll~ApfGg~~~nlaait 284 (395)
T TIGR00843 210 ALPQFIAPDFSFA-----HSLNLALPLFLVSLAGQFAPGIAALKAAGYNAPAKPIIAAAGLAALFAAFAGGISIGIAAIT 284 (395)
T ss_pred ccceeeCCCCCHH-----HHHHHHHHHHHHHHHhcCchHHHHHHHcCCCCCchHHHHHHHHHHHHHhccCCchhhhhHHh
Confidence 223 34554332 2233333333343322222222334567899999999999999999999999999 3
Q ss_pred CchhhHhHHhhhcCCcchHHHHHHHHHHHHHHHH---hhHHHhhhhHHHHHHHHHHHhhccCChhHHHHHHccChhhHHH
Q 010524 393 TGSFSRSAVNFRAGCESTVSNIVMAITVLISLEF---FTRLLYYTPMAILASIIMSALPGLIDFNEFYNIWKVDKLDFLA 469 (508)
Q Consensus 393 ~~s~srS~vn~~~G~~T~ls~iv~a~~~ll~ll~---l~pl~~~iP~~vLa~iii~~~~~li~~~~~~~l~k~~~~d~~i 469 (508)
+.-+.......+ ++|+-.+++..|++.++..++ +..++..+|+...+.+-=.+.++-+.- .+..-.+ +..+...
T Consensus 285 aAic~G~~ah~d-~~rR~~a~i~~Gv~yll~glfag~i~~l~~~~P~~li~~laGlAll~~~~~-~l~~a~~-~~~~r~~ 361 (395)
T TIGR00843 285 AAICMGKDAHED-KDKRWIAAAAAGIFYLLAGLFAGAITALFAALPKELIAALAGLALLGAIAG-NIKIALH-EDQERDA 361 (395)
T ss_pred HHHhcCcccccC-cCccchHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH-HHHHHhc-CcchhHH
Confidence 322222233333 889999999999999998877 567899999988777654444443321 2222222 2223344
Q ss_pred HHHHHHHHH----HHHH---HHHHHHHHHH
Q 010524 470 CIGAFFGVL----FASV---EIGLLVAVIF 492 (508)
Q Consensus 470 ~~~t~~~~~----~~~v---~~Gi~~gv~~ 492 (508)
.++||+.|. ++|+ ..|+.+|+..
T Consensus 362 a~~tflvtaSg~~~~gigaafWgl~~G~~~ 391 (395)
T TIGR00843 362 ALIAFLATASGLHFLGIGSAFWGLCAGGLA 391 (395)
T ss_pred HHHHHHHHHhcCCcccccHHHHHHHHHHHH
Confidence 556666553 3333 3577777544
No 16
>TIGR00834 ae anion exchange protein. They preferentially catalyze anion exchange (antiport) reactions, typically acting as HCO3-:Cl- antiporters, but also transporting a range of other inorganic and organic anions. Additionally, renal Na+:HCO3- cotransporters have been found to be members of the AE family. They catalyze the reabsorption of HCO3- in the renal proximal tubule.
Probab=99.49 E-value=1.6e-10 Score=129.41 Aligned_cols=345 Identities=12% Similarity=0.106 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhC------CCcchhHHHhhhhhHHHHhhcCCCccccchhHHHHHHHHHHHHhhcCCCCChh
Q 010524 97 AGLTLASLCIPQSIGYATLAK------LDPQYGLYTSVVPPLIYAVMGTSREIAIGPVAVVSLLLSSMIQKVQDPLANPI 170 (508)
Q Consensus 97 aGltv~~~~iPq~iaya~lag------lpp~~GLyss~v~~liy~lfGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~ 170 (508)
|=+-+.+.++.-+++|+.+-+ +...=-|.|+.+.+++|++||+-|..++|+++..+++...+.+--.+ ...
T Consensus 374 a~ifiyFA~L~PaIaFG~ll~~~T~g~~gv~E~Llstai~Giifslf~GQPL~IlG~TGPilvF~~~ly~~c~~---~~~ 450 (900)
T TIGR00834 374 AVIFIYFAALSPAITFGGLLGEKTRNMMGVSELLISTAVQGVLFALLAAQPLLVVGFSGPLLVFEEAFFSFCES---NGL 450 (900)
T ss_pred HHHHHHHHHhhHHhhHHHHHHHhhCCcchHHHHHHHHHHHHHHHhhhcCCceEEecCcccHHHHHHHHHHHHhh---cCC
Confidence 444455667777888876533 33334589999999999999999999999999888876644433221 123
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhccHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCC----CCcHH-------
Q 010524 171 AYRNFVLTATFFAGIFQASFGLFRLGFLIDILSHAAVVGFMAGAAIVIGLQQLKGLIGIPHFTN----KTDAI------- 239 (508)
Q Consensus 171 ~~~~~~~~~t~l~Gvi~~~lgllrlG~l~~~ip~~vi~Gf~~gigl~I~~~Ql~~~lG~~~~~~----~~~~~------- 239 (508)
+|......+.+.++++.++++.+...++++|+.+-.--.|-.=++++-+...++.+...-.... ++...
T Consensus 451 ~yl~~~~WigiW~~~~~~lla~~~~s~lvryiTRFTeEiFa~lIs~IFI~eai~~L~~~f~~~~~~~~~~~~~~~~~~~~ 530 (900)
T TIGR00834 451 EYLVGRVWIGLWLVLLVLLLVATEGSFLVRYISRFTQEIFSFLISLIFIYETFSKLIKIFQEHPLQVFYNTLFCVPPKPQ 530 (900)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccccccccccc
Confidence 5788888999999999999999999999999999999999999998888887777654311000 00000
Q ss_pred -HHH-----------HHHH-----hhCCCCCchhHHHHHHHHHHHHHHHHHhhhc--hhh--hcccccchhHHHHHHHHH
Q 010524 240 -SVV-----------KAVW-----NSLHHTWSPQNFILGCSFLCFILTTRYLGRK--KRK--LFWLPAIAPLVSVILSTL 298 (508)
Q Consensus 240 -~~~-----------~~~~-----~~l~~~~~~~~~~ig~~~l~~ll~~~~~~~~--~~~--~~~~p~~~~Li~ii~~t~ 298 (508)
... ...+ ...++ .-..++++.+.++.+.+..+.+++. +++ +..+...+..++|++.+.
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~c~~~~~-~~llsliL~lgTf~~a~~L~~fk~s~yf~~~vR~~isDfgv~iaI~~~t~ 609 (900)
T TIGR00834 531 GPSVSALLEKDCSKLGGTLGGNNCRFQPN-TALLSLVLMLGTFFLAMFLRKFKNSRYFPGKARRLIGDFGVPISILIMVL 609 (900)
T ss_pred cccccccccccccccccccccccccccch-HHHHHHHHHHHHHHHHHHHHHhCCCCcCCchhhhhhhhhhHHHHHHHHHH
Confidence 000 0000 00011 1123334444444444444433211 111 112444577889999999
Q ss_pred HHHHhhc-CCCCeeEeeccccCCCCCc-------ccccc----cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q 010524 299 FVFLTRA-DKHGVKIVKHIDRGLNPSS-------VHQIQ----FHGQHVGEVAKIGFVAAIVALAEAIAVGRSFASIKGY 366 (508)
Q Consensus 299 i~~~~~~-~~~~v~~vg~ip~gl~~~~-------~p~~~----~~~~~~~~~~~~~~~~~iv~~~e~i~~~~~~a~~~~~ 366 (508)
+.|.++. +.... ++|.++.+-+ ++.+. +.+.....++..++.+++.-|+|+-.++....+++ +
T Consensus 610 v~~~~~~v~~~kl----~Vp~~f~pt~p~~R~W~i~p~~~~~~~p~w~~~~A~iPAlll~ILiFmD~nIts~iv~~~e-~ 684 (900)
T TIGR00834 610 VDIFIGDTYTQKL----SVPSGLKVTNPSARGWFIPPLGENRPFPWWMMFAAALPALLVFILIFMEQQITTLIVSKKE-R 684 (900)
T ss_pred HHHHhccCccccc----CCCCCcCCCCCCCCCeEEccccccccccHHHHHHHHHHHHHHHHHHHHHhhhHHHHhcCcc-c
Confidence 9997652 11111 3455554221 11111 12223455677788899999999976665554432 2
Q ss_pred cCC----CChHHHHHhHHHHHHhhhcccCCCchhhHhHHhhhc-----------------CC-cchHHHHHHHHHHHHHH
Q 010524 367 RLD----GNKEMVAMGFMNIVGSFTSCYVATGSFSRSAVNFRA-----------------GC-ESTVSNIVMAITVLISL 424 (508)
Q Consensus 367 ~id----~nqEL~a~G~~Ni~~s~fg~~p~~~s~srS~vn~~~-----------------G~-~T~ls~iv~a~~~ll~l 424 (508)
+.. -+-.+.-+|+.|.++|++|-=+.+|...||....++ ++ .+|+++++.++++.+.+
T Consensus 685 kLkKgsgyH~Dllllg~~~~v~sllGLPw~~aatv~S~~Hv~sL~v~~~~~~~Ge~~~i~~V~EQRvT~ll~~lLiglsv 764 (900)
T TIGR00834 685 KLKKGSGFHLDLLLVVGMGGVAALFGLPWLSAATVRSVTHANALTVMSKASAPGEKAQIQEVREQRVTGLLVAVLVGLSI 764 (900)
T ss_pred cCCCCcccchHHHHHHHHHHHHHhcCCCcccccCCcChhhHhHHeeeeeccCCCCCCccceeEeeehHHHHHHHHHHHHH
Confidence 211 356899999999999999977677776666554431 22 37999999998776665
Q ss_pred HHhhHHHhhhhHHHHHHHHHHHhhccC
Q 010524 425 EFFTRLLYYTPMAILASIIMSALPGLI 451 (508)
Q Consensus 425 l~l~pl~~~iP~~vLa~iii~~~~~li 451 (508)
+++|++.+||++||.|+-++.|+.-+
T Consensus 765 -~~~PvL~~IP~aVL~GvFlYMGv~SL 790 (900)
T TIGR00834 765 -LMEPILKRIPLAVLFGIFLYMGVTSL 790 (900)
T ss_pred -HHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 68999999999999999999887643
No 17
>KOG1172 consensus Na+-independent Cl/HCO3 exchanger AE1 and related transporters (SLC4 family) [Inorganic ion transport and metabolism]
Probab=99.46 E-value=3.6e-10 Score=123.75 Aligned_cols=334 Identities=12% Similarity=0.130 Sum_probs=219.5
Q ss_pred HHHHHHHhhC------CCcchhHHHhhhhhHHHHhhcCCCccccchhHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHH
Q 010524 108 QSIGYATLAK------LDPQYGLYTSVVPPLIYAVMGTSREIAIGPVAVVSLLLSSMIQKVQDPLANPIAYRNFVLTATF 181 (508)
Q Consensus 108 q~iaya~lag------lpp~~GLyss~v~~liy~lfGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~t~ 181 (508)
-+|+|+.+-+ +...=-|.|+.+++++|++||+-|..++|+++...++-..+..=-. +++.+|+...+.+.+
T Consensus 376 P~ItFG~ll~~~Tdg~~~v~E~L~stal~GiifslfggQPLlIlg~TgP~lVfe~~lf~f~~---~~~~dyl~~r~wVgl 452 (876)
T KOG1172|consen 376 PAITFGGLLGEATDGLIGVVETLLSTALCGIIFSLFGGQPLLILGVTGPLLVFEKALFKFCK---DNGLDYLAFRAWVGL 452 (876)
T ss_pred hHhhHHHHhhhhccchHHHHHHHHHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHHHHh---hCCCchhhHHHHHHH
Confidence 3566665432 2222348999999999999999999999998888776543332211 223568888899999
Q ss_pred HHHHHHHHHhhhhhhhHHhhccHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCCCC----cH--HH-HHHHHHhhC-----
Q 010524 182 FAGIFQASFGLFRLGFLIDILSHAAVVGFMAGAAIVIGLQQLKGLIGIPHFTNKT----DA--IS-VVKAVWNSL----- 249 (508)
Q Consensus 182 l~Gvi~~~lgllrlG~l~~~ip~~vi~Gf~~gigl~I~~~Ql~~~lG~~~~~~~~----~~--~~-~~~~~~~~l----- 249 (508)
.+.++.+++..+....+++|+.+..=-.|-.=|+++.+...++.+.++......+ +. .. ... -..+.
T Consensus 453 W~~~l~illaa~~as~lv~~~TRfteEiF~~LIs~iFi~eai~kl~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 531 (876)
T KOG1172|consen 453 WTAFLLILLAATNASSLVKYITRFTEEIFGLLISLIFIYEAIKKLIKIFKGLPIEFDSKPNPGADWSGP-ECESVSGTLL 531 (876)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhcCcccccccCCcccccccc-cccccCcccC
Confidence 9999999999999999999999999999999999999999888776553210000 00 00 000 00000
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhhchhhh--------cccccchhHHHHHHHHHHHHHhh-cCCCCeeEeeccccCC
Q 010524 250 HHTWSPQNFILGCSFLCFILTTRYLGRKKRKL--------FWLPAIAPLVSVILSTLFVFLTR-ADKHGVKIVKHIDRGL 320 (508)
Q Consensus 250 ~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~--------~~~p~~~~Li~ii~~t~i~~~~~-~~~~~v~~vg~ip~gl 320 (508)
+..+.+.+.+++++..+..+......|++++. .++...+..++|++.+.+.|..+ ....++ +.|..+
T Consensus 532 ~~~~~p~~~llslil~~gt~~~a~~lr~fr~s~yf~~~~R~~isDfgvpisIl~~s~i~~~~~~~~~~kl----~vp~~~ 607 (876)
T KOG1172|consen 532 GSSCRPDTALLSLILMFGTLFLALTLRKFKSSRYFPRKVRSLISDFGVPLSILVFSLIDYFGGSVETPKL----PVPSVF 607 (876)
T ss_pred CCcCCcchHHHHHHHHHHHHHHHHHHHHhccCCccchHHHHHHHhhhhHHHHHHHHHHHhhccccCCCcc----ccCcCC
Confidence 00122334444443322222222112222221 12344466788999999999875 233333 223334
Q ss_pred CCCcc--------cccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCC----CChHHHHHhHHHHHHhhhc
Q 010524 321 NPSSV--------HQIQFHGQHVGEVAKIGFVAAIVALAEAIAVGRSFASIKGYRLD----GNKEMVAMGFMNIVGSFTS 388 (508)
Q Consensus 321 ~~~~~--------p~~~~~~~~~~~~~~~~~~~~iv~~~e~i~~~~~~a~~~~~~id----~nqEL~a~G~~Ni~~s~fg 388 (508)
|++.- |.-+..+.....++..++.+++.-|+|+-.++....++ +++.. -.=.+.-+|+.|+++|++|
T Consensus 608 ~~t~~~~rgw~v~~~~~~P~~~~~~A~ipalll~iLiFmDqqIts~iv~rk-e~kLKKgsgyH~DLlllgil~~icsllG 686 (876)
T KOG1172|consen 608 PPTWPFDRGWFVPPFGKNPWWYVFAALIPALLLTILIFMDQQITAVIVNRK-ENKLKKGSGYHLDLLLLGILTLICSLLG 686 (876)
T ss_pred CCCCcccCCeeeCCCCCCCHHHHHHHHHHHHHHHHHHHhcchHHHHHhhcc-cccCCCCcchhHHHHHHHHHHHHHHhcC
Confidence 33221 11123444566677788889999999997666554443 33222 2348999999999999999
Q ss_pred ccCCCchhhHhHHhhhc-----------------CC-cchHHHHHHHHHHHHHHHHhhHHHhhhhHHHHHHHHHHHhhcc
Q 010524 389 CYVATGSFSRSAVNFRA-----------------GC-ESTVSNIVMAITVLISLEFFTRLLYYTPMAILASIIMSALPGL 450 (508)
Q Consensus 389 ~~p~~~s~srS~vn~~~-----------------G~-~T~ls~iv~a~~~ll~ll~l~pl~~~iP~~vLa~iii~~~~~l 450 (508)
==+.+|...+|-...++ |+ ..|++|++.++++.+. .++.|++..||++||.|+-.+.|+.=
T Consensus 687 LPw~~~a~p~S~~H~~SL~v~~~~~apge~~~i~~V~EQRvtgll~~llvgls-~~~~pvL~~IP~~VL~GvFlYMgv~S 765 (876)
T KOG1172|consen 687 LPWSNAATVQSPMHTKSLAVESETSAPGEQPQIVGVREQRVTGLLQFLLVGLS-VLLLPVLKLIPMPVLYGVFLYMGVSS 765 (876)
T ss_pred CCccccccccCHHHHHHHHHhhcccCCCCccccccchhhhhHHHHHHHHHHHH-HHHHHHHhhccHHHHHHHHHHHhhcc
Confidence 77778888877666552 33 3589999999998844 47999999999999999999988864
Q ss_pred C
Q 010524 451 I 451 (508)
Q Consensus 451 i 451 (508)
+
T Consensus 766 L 766 (876)
T KOG1172|consen 766 L 766 (876)
T ss_pred C
Confidence 3
No 18
>PF03594 BenE: Benzoate membrane transport protein; InterPro: IPR004711 The benzoate:H+ symporter (BenE) family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter [, ]. Proteins in this family are about 400 residues in length and probably span the membrane 12 times. They exhibit about 30% identity to each other and limited sequence similarity to members of the aromatic acid:H+symporter (AAHS) family of the major facilitator superfamily (MFS). However the degree of similarity with the latter proteins is insufficient to establish homology. Thus, in spite of the sequence similarity and their similar substrate specificities, the BenE family must be considered separately. This family is classified as TC number 2.A.46 under the transporter classification (TC) system [].; GO: 0016021 integral to membrane
Probab=99.27 E-value=3.1e-09 Score=108.12 Aligned_cols=343 Identities=16% Similarity=0.187 Sum_probs=200.8
Q ss_pred HHHHHHHHHHHHHH--HHHHHH--HHhhCCCcc---hhHHHh----hhhhHHHHhhcCCCccccchhHHHHHHHHHHHHh
Q 010524 93 NDLMAGLTLASLCI--PQSIGY--ATLAKLDPQ---YGLYTS----VVPPLIYAVMGTSREIAIGPVAVVSLLLSSMIQK 161 (508)
Q Consensus 93 ~DiiaGltv~~~~i--Pq~iay--a~laglpp~---~GLyss----~v~~liy~lfGss~~~~~Gp~a~~sl~~~~~v~~ 161 (508)
+.+.+|+...++.. |-.+-+ +.-+|+.+. ..+.+. .+.++.+++.=+-|....=.+...+++. +...+
T Consensus 6 s~~~aG~va~lvg~tg~~aiv~qaa~a~g~s~~q~~SWl~al~~~~Gl~~i~lSl~yR~Pi~~AWStPGaAlL~-~~~~~ 84 (378)
T PF03594_consen 6 SAVSAGFVAVLVGYTGPVAIVLQAAQAAGASPAQIASWLFALYLGMGLTSILLSLRYRMPIVTAWSTPGAALLA-TSLPG 84 (378)
T ss_pred HHHHHHHHHHHhhccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhcchHHHHHHH-HhccC
Confidence 34556665554321 111111 334677665 234433 2334445554333332222233344443 33333
Q ss_pred hcCCCCChhhHHHHHHHHHHHHHHHHHHHhhhh-hhhHHhhccHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCCCCcHHH
Q 010524 162 VQDPLANPIAYRNFVLTATFFAGIFQASFGLFR-LGFLIDILSHAAVVGFMAGAAIVIGLQQLKGLIGIPHFTNKTDAIS 240 (508)
Q Consensus 162 ~~~~~~~~~~~~~~~~~~t~l~Gvi~~~lgllr-lG~l~~~ip~~vi~Gf~~gigl~I~~~Ql~~~lG~~~~~~~~~~~~ 240 (508)
.. +..+..+-+++|++.++.|+.+ ++++++++|.++..++++|+-+-...+-++
T Consensus 85 ~~---------~~eavGAfl~~~~Li~l~G~tg~~~rl~~~IP~~ia~AMLAGvLl~f~l~~f~---------------- 139 (378)
T PF03594_consen 85 YS---------FAEAVGAFLVAGALILLLGVTGLFGRLMRRIPPPIASAMLAGVLLPFGLAAFT---------------- 139 (378)
T ss_pred CC---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 22 4556778899999999999999 599999999999999999998876644322
Q ss_pred HHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHhhhchhhhcccccchhHHHHHHHHHHHHHhhcCCCCeeEeeccccCC
Q 010524 241 VVKAVWNSLHHTWSPQNFILGCSFLCFILTTRYLGRKKRKLFWLPAIAPLVSVILSTLFVFLTRADKHGVKIVKHIDRGL 320 (508)
Q Consensus 241 ~~~~~~~~l~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~p~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~ip~gl 320 (508)
.+.+ + .. +....++..++.|++.+|+ +.+.+++.+.++++..+.-.. .+.+..+
T Consensus 140 -------a~~~--~--P~-l~~~ml~~~l~~~r~~pr~---------av~~al~~g~~~a~~~g~~~~-----~~~~~~~ 193 (378)
T PF03594_consen 140 -------ALQA--D--PL-LVGPMLAVFLLARRFSPRY---------AVLAALVAGVAVAALTGQLHP-----SALQLSL 193 (378)
T ss_pred -------HHHh--H--HH-HHHHHHHHHHHHHHHcchh---------HHHHHHHHHHHHHHhcCCCCc-----ccccccc
Confidence 2221 1 12 2223333344455554554 345677777777776542111 1112233
Q ss_pred CCC--cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCCCChHHHHHhHHHHHHhhhcccCCCchhhH
Q 010524 321 NPS--SVHQIQFHGQHVGEVAKIGFVAAIVALAEAIAVGRSFASIKGYRLDGNKEMVAMGFMNIVGSFTSCYVATGSFSR 398 (508)
Q Consensus 321 ~~~--~~p~~~~~~~~~~~~~~~~~~~~iv~~~e~i~~~~~~a~~~~~~id~nqEL~a~G~~Ni~~s~fg~~p~~~s~sr 398 (508)
+.| ..|++++ ...+.+++-+.++.+..-..-+-+.-+.+||+.+.|+-+..-|++|++.+.|||++.+-.---
T Consensus 194 ~~p~~~~P~Fs~-----~a~v~lalPL~ivtmasQnlpG~aVL~a~GY~~p~~~~~~~tGl~s~l~ApfGg~~~nlAait 268 (378)
T PF03594_consen 194 AHPVFTTPEFSW-----SALVSLALPLFIVTMASQNLPGIAVLRAAGYQPPVNPLITVTGLASLLAAPFGGHAVNLAAIT 268 (378)
T ss_pred ceeEEECCcccH-----HHHHHHHHHHHHHHHHhcchHHHHHHHHcCCCCCchHHHHHHHHHHHHHhhhchhhhHHHHHH
Confidence 333 3455443 234455555666666544444444556789999999999999999999999999997755444
Q ss_pred hHHhhh--cC---CcchHHHHHHHHHHHHHHHH---hhHHHhhhhHHHHHHHHHHHhhccCChhHHHHHHccChhhHHHH
Q 010524 399 SAVNFR--AG---CESTVSNIVMAITVLISLEF---FTRLLYYTPMAILASIIMSALPGLIDFNEFYNIWKVDKLDFLAC 470 (508)
Q Consensus 399 S~vn~~--~G---~~T~ls~iv~a~~~ll~ll~---l~pl~~~iP~~vLa~iii~~~~~li~~~~~~~l~k~~~~d~~i~ 470 (508)
.++... ++ .|--.++++.|+..++..++ +..++..+|++..+.+-=.+..+-+. ..+..-++.++ +..-.
T Consensus 269 aAIc~g~eah~dp~rRy~Aav~~Gv~yll~Gl~a~~~v~l~~~lP~~li~~lAGLALlg~l~-~sl~~A~~~~~-~r~aA 346 (378)
T PF03594_consen 269 AAICAGPEAHPDPSRRYIAAVAAGVFYLLFGLFAAALVALFAALPPALIAALAGLALLGTLG-GSLQTAFSDEK-YREAA 346 (378)
T ss_pred HHHHcCCccCCCcccchHHHHHHhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-HHHHHHhcCcc-hhHHH
Confidence 444443 33 45568899999999988887 56788899998777664444444332 23334444322 22344
Q ss_pred HHHHHHHH----HHH---HHHHHHHHHHHHH
Q 010524 471 IGAFFGVL----FAS---VEIGLLVAVIFLS 494 (508)
Q Consensus 471 ~~t~~~~~----~~~---v~~Gi~~gv~~s~ 494 (508)
++||+.|. ++| -..|+.+|+....
T Consensus 347 lvtFlvtaSGisl~gIgaafWgLv~G~~~~~ 377 (378)
T PF03594_consen 347 LVTFLVTASGISLLGIGAAFWGLVAGLLVHL 377 (378)
T ss_pred HHHHHHHHcCCCcccccHHHHHHHHHHHHHh
Confidence 55665553 333 3367777776543
No 19
>COG3135 BenE Uncharacterized protein involved in benzoate metabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.82 E-value=2.1e-06 Score=85.98 Aligned_cols=311 Identities=17% Similarity=0.192 Sum_probs=180.1
Q ss_pred hhHHHHhhcCCCccccchhHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhhhh-hhhHHhhccHHHHH
Q 010524 130 PPLIYAVMGTSREIAIGPVAVVSLLLSSMIQKVQDPLANPIAYRNFVLTATFFAGIFQASFGLFR-LGFLIDILSHAAVV 208 (508)
Q Consensus 130 ~~liy~lfGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~t~l~Gvi~~~lgllr-lG~l~~~ip~~vi~ 208 (508)
..+-+.++=..|.+..=.+...+++..+. .++ ....+..+-+.+|+..++.|++| ++++++-+|+++-.
T Consensus 69 ~ti~Ls~~yR~Pv~~aWSTPG~all~asl-~g~---------s~~eaVGAfiVt~~li~l~G~~~~l~rl~~~IP~sla~ 138 (402)
T COG3135 69 STLTLSLRYRVPVLTAWSTPGAALLVASL-GGL---------SFAEAVGAFIVTGALIILCGLTGPLTRLMRIIPPSLAA 138 (402)
T ss_pred HHHHHHhhhccceeeeecCccHHHHHhcc-CCC---------CHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhCChHHHH
Confidence 34455555555554433344444444432 221 13456778889999999999999 69999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhCCCCCCCCCcHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHhhhchhhhcccccch
Q 010524 209 GFMAGAAIVIGLQQLKGLIGIPHFTNKTDAISVVKAVWNSLHHTWSPQNFILGCSFLCFILTTRYLGRKKRKLFWLPAIA 288 (508)
Q Consensus 209 Gf~~gigl~I~~~Ql~~~lG~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~p~~~ 288 (508)
+..+|+=+-.....++. +++ + .+ +....+...++.|.+.+|+ +
T Consensus 139 AmlAGILL~F~l~a~~a-----------------------~~~--~--p~-l~lpmv~~~ll~r~f~pr~---------a 181 (402)
T COG3135 139 AMLAGILLRFGLKAFKA-----------------------LPT--Q--PL-LVLPMVLAYLLARVFAPRY---------A 181 (402)
T ss_pred HHHHHHHHHHHHHHHhc-----------------------cCC--C--hH-HHHHHHHHHHHHHHcCchH---------H
Confidence 99999877666444332 111 1 11 2222233334456666655 5
Q ss_pred hHHHHHHHHHHHHHhhcCCCCeeEeeccccCCCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcC
Q 010524 289 PLVSVILSTLFVFLTRADKHGVKIVKHIDRGLNPSSVHQIQFHGQHVGEVAKIGFVAAIVALAEAIAVGRSFASIKGYRL 368 (508)
Q Consensus 289 ~Li~ii~~t~i~~~~~~~~~~v~~vg~ip~gl~~~~~p~~~~~~~~~~~~~~~~~~~~iv~~~e~i~~~~~~a~~~~~~i 368 (508)
...+++++..++...+.-.+ ......+ .-|....|++++ ...+.+++-+.++.+..--.-+-+.=+.+||+.
T Consensus 182 V~aalvvgv~va~~~G~~~~-~~~~~~~--~~p~~v~P~Fs~-----~A~l~lalPL~lvtmasQN~pGiAvLka~gY~p 253 (402)
T COG3135 182 VIAALVVGVLVAALLGDLHT-ALVALEI--STPTWVTPEFSF-----AAMLSLALPLFLVTMASQNLPGIAVLKAAGYQP 253 (402)
T ss_pred HHHHHHHHHHHHHHhCcccc-ccccccc--CcceeeCCcccH-----HHHHHHhHHHHHHHHHhccCccceeehhcCCCC
Confidence 56777888888877653221 0011111 112233344432 334555555666666544322323335689999
Q ss_pred CCChHHHHHhHHHHHHhhhcccCCCchhhHhHHhhhcC------CcchHHHHHHHHHHHHHHHH---hhHHHhhhhHHHH
Q 010524 369 DGNKEMVAMGFMNIVGSFTSCYVATGSFSRSAVNFRAG------CESTVSNIVMAITVLISLEF---FTRLLYYTPMAIL 439 (508)
Q Consensus 369 d~nqEL~a~G~~Ni~~s~fg~~p~~~s~srS~vn~~~G------~~T~ls~iv~a~~~ll~ll~---l~pl~~~iP~~vL 439 (508)
+++--+.+-|+..+.++.||++..+- -.-|+.-.... .|.-.+++++|+.-+++.+| +..++..+|+...
T Consensus 254 p~~pl~~~TGl~sll~ApfG~~t~nL-aAItAAic~gpdaHpD~~rry~Aa~~agi~ylv~GlF~~~~~~l~~alP~~li 332 (402)
T COG3135 254 PPSPLIVATGLASLLSAPFGGHTVNL-AAITAAICTGPDAHPDPARRYTAALVAGIFYLLAGLFGGALVGLMAALPASLI 332 (402)
T ss_pred CCchHHHHhHHHHHHhcccccceecH-HHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHHHH
Confidence 99999999999999999999998663 22233333322 46678999999999999988 4557778998765
Q ss_pred HHHHHHHhhccCChhHHHHHHccChhhHHHHHHHHHHH----HHHHH---HHHHHHHHHHHHHHHH
Q 010524 440 ASIIMSALPGLIDFNEFYNIWKVDKLDFLACIGAFFGV----LFASV---EIGLLVAVIFLSCCLT 498 (508)
Q Consensus 440 a~iii~~~~~li~~~~~~~l~k~~~~d~~i~~~t~~~~----~~~~v---~~Gi~~gv~~s~l~~~ 498 (508)
+.+-=.+..+-+. ..+..-.| |..|....+++|+.| .++|+ ..|+..|.....+.-.
T Consensus 333 ~~lAGLALlg~~~-~~l~~A~~-~~~~R~aAlvtF~VTaSG~tl~GIgaafWGLvaG~~~~~L~~~ 396 (402)
T COG3135 333 AALAGLALLGTLG-NSLQAALK-DEREREAALVTFLVTASGLTLFGIGAAFWGLVAGLLVLALLNL 396 (402)
T ss_pred HHHHHHHHHHHHH-HHHHHHhc-CcccchhhhhheeehhccceeecccHHHHHHHHHHHHHHHHhh
Confidence 5443222222221 11222222 122223334444444 33443 3677777665554433
No 20
>PF00955 HCO3_cotransp: HCO3- transporter family Only partial structure; InterPro: IPR011531 Bicarbonate (HCO3 -) transport mechanisms are the principal regulators of pH in animal cells. Such transport also plays a vital role in acid-base movements in the stomach, pancreas, intestine, kidney, reproductive organs and the central nervous system. Functional studies have suggested four different HCO3 - transport modes. Anion exchanger proteins exchange HCO3 - for Cl- in a reversible, electroneutral manner []. Na+/HCO3 - co-transport proteins mediate the coupled movement of Na+ and HCO3 - across plasma membranes, often in an electrogenic manner []. Na- driven Cl-/HCO3 - exchange and K+/HCO3 - exchange activities have also been detected in certain cell types, although the molecular identities of the proteins responsible remain to be determined. Sequence analysis of the two families of HCO3 - transporters that have been cloned to date (the anion exchangers and Na+/HCO3 - co-transporters) reveals that they are homologous. This is not entirely unexpected, given that they both transport HCO3 - and are inhibited by a class of pharmacological agents called disulphonic stilbenes []. They share around ~25-30% sequence identity, which is distributed along their entire sequence length, and have similar predicted membrane topologies, suggesting they have ~10 transmembrane (TM) domains. This domain is found at the C terminus of many bicarbonate transport proteins. It is also found in some plant proteins responsible for boron transport []. In these proteins it covers almost the entire length of the sequence.; GO: 0006820 anion transport, 0016021 integral to membrane; PDB: 1BH7_A 1BTT_A 1BZK_A 1BTQ_A 1BTR_A 1BNX_A 1BTS_A.
Probab=98.80 E-value=1.6e-09 Score=115.54 Aligned_cols=345 Identities=15% Similarity=0.230 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhC------CCcchhHHHhhhhhHHHHhhcCCCccccchhHHHHHHHHHHHHhhcCCCCChh
Q 010524 97 AGLTLASLCIPQSIGYATLAK------LDPQYGLYTSVVPPLIYAVMGTSREIAIGPVAVVSLLLSSMIQKVQDPLANPI 170 (508)
Q Consensus 97 aGltv~~~~iPq~iaya~lag------lpp~~GLyss~v~~liy~lfGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~ 170 (508)
+=+-+.+.++.-+++|+.+-+ +...=.+.++.+.+++|++||+.|..++|+++.+.++.....+--. +...
T Consensus 38 ~~~flyfa~l~PaItFG~ll~~~T~~~~gv~e~l~~~~i~Gi~f~lf~gQPL~Ilg~TgP~~vf~~~l~~~~~---~~~~ 114 (510)
T PF00955_consen 38 ATLFLYFACLSPAITFGGLLGEATDGAIGVMEVLLSTAICGIIFSLFSGQPLTILGSTGPVLVFEKILYKFCK---SYGL 114 (510)
T ss_dssp HHHHHHHHHHHHHHSSS-SS---------HHHHHHHHHHHHHHHHHCC--------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---cccc
Confidence 334445667777888876543 3333458899999999999999999999999988776543322111 1123
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhccHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCCC-CcH-----------
Q 010524 171 AYRNFVLTATFFAGIFQASFGLFRLGFLIDILSHAAVVGFMAGAAIVIGLQQLKGLIGIPHFTNK-TDA----------- 238 (508)
Q Consensus 171 ~~~~~~~~~t~l~Gvi~~~lgllrlG~l~~~ip~~vi~Gf~~gigl~I~~~Ql~~~lG~~~~~~~-~~~----------- 238 (508)
+|+..-....+.++++.+++..+...++++|+.+..-..|..=++++.+...++.+..+-..... .+.
T Consensus 115 ~fl~~~~wig~w~~~~~~~~~~~~~s~lv~~~TRfTeEiF~~lIs~iFi~ea~~~l~~~~~~~p~~~~~~~~~~c~c~~~ 194 (510)
T PF00955_consen 115 DFLPFRAWIGIWTAIFLLVLAAFNASFLVRYITRFTEEIFALLISIIFIYEAIKKLVKIFKKYPLNSDYVTQYSCQCTPP 194 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 57777788999999999999999999999999999999999999998888888777644210000 000
Q ss_pred ------------------HH---HHHHHHhhCCC-----------CCchhHHHHH----HHHHHHHHHHHHh------hh
Q 010524 239 ------------------IS---VVKAVWNSLHH-----------TWSPQNFILG----CSFLCFILTTRYL------GR 276 (508)
Q Consensus 239 ------------------~~---~~~~~~~~l~~-----------~~~~~~~~ig----~~~l~~ll~~~~~------~~ 276 (508)
.. ...+-..+.+. ...+.+.+++ +.++.+-...+.+ ++
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~g~~~g~~c~~~~~~~p~taLlSliL~lgTf~la~~L~~fk~S~yf~~ 274 (510)
T PF00955_consen 195 ENSNNSTLNPWTNLNNGSINWSNLSNSECENINGELVGTSCDDHVQYQPDTALLSLILALGTFWLAYTLRQFKNSPYFPR 274 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcCCcCccH
Confidence 00 00000000000 0122222222 2222222222222 12
Q ss_pred chhhhcccccchhHHHHHHHHHHHHHhhcCCCCeeEeeccccCCCCCc-------cccc-ccchhhHHHHHHHHHHHHHH
Q 010524 277 KKRKLFWLPAIAPLVSVILSTLFVFLTRADKHGVKIVKHIDRGLNPSS-------VHQI-QFHGQHVGEVAKIGFVAAIV 348 (508)
Q Consensus 277 ~~~~~~~~p~~~~Li~ii~~t~i~~~~~~~~~~v~~vg~ip~gl~~~~-------~p~~-~~~~~~~~~~~~~~~~~~iv 348 (508)
+.++ .+...+..++|++.+.+.+..+.+.... ++|.++.+.. ++.+ +..+.....++..++.+++.
T Consensus 275 ~vR~--~isDf~v~iaI~~~~~~~~~~~~~~~kL----~vp~~f~pt~~~~r~W~v~p~~~~p~w~~~aA~~palll~iL 348 (510)
T PF00955_consen 275 WVRE--IISDFGVPIAILIMTLVDYLFGVDTPKL----NVPSSFKPTSPGKRGWFVNPFGSLPWWAIFAAIIPALLLTIL 348 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHH--hHHhhHHHHHHHHHHHHHHHhccccccc----CCCCCCCCCCCCCCCeecCcccCCCHHHHHHHHHHHHHHHHH
Confidence 2222 2444566788888888888765322222 3344433211 1111 11111223344456777888
Q ss_pred HHHHHHHHHHHHhhhcCCc---CCCChHHHHHhHHHHHHhhhcccCCCchhhHhHHhhhc-----------------CC-
Q 010524 349 ALAEAIAVGRSFASIKGYR---LDGNKEMVAMGFMNIVGSFTSCYVATGSFSRSAVNFRA-----------------GC- 407 (508)
Q Consensus 349 ~~~e~i~~~~~~a~~~~~~---id~nqEL~a~G~~Ni~~s~fg~~p~~~s~srS~vn~~~-----------------G~- 407 (508)
-++|.-.++....++++.- .--+-++.-+|+.|.++|++|-=..++...||....++ ++
T Consensus 349 ~F~DqnIts~ivn~~e~kLkKg~gyH~DL~llgi~~~v~sllGLPw~~aa~~~S~~Hv~sL~~~~~~~~pGe~~~i~~V~ 428 (510)
T PF00955_consen 349 FFMDQNITSLIVNRPENKLKKGSGYHLDLFLLGIITLVCSLLGLPWMNAATPQSPMHVRSLAVESETSAPGEKPKIVGVR 428 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhHhHHHhCChhhccCCCCcccHHHHHHHHHHHHHHHcCCCCcccCccCCHHHhCcccEEeccccCCCCCeeCeEE
Confidence 8888865554433322111 11234689999999999999966677777676654432 22
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHhhhhHHHHHHHHHHHhhccC
Q 010524 408 ESTVSNIVMAITVLISLEFFTRLLYYTPMAILASIIMSALPGLI 451 (508)
Q Consensus 408 ~T~ls~iv~a~~~ll~ll~l~pl~~~iP~~vLa~iii~~~~~li 451 (508)
.+|+++++..+++.+.+ ++.|++.+||++||.|+-++.|+.-+
T Consensus 429 EqRvT~l~~~~Ligls~-~l~pvL~~IP~~VL~GvFlymG~~sL 471 (510)
T PF00955_consen 429 EQRVTGLLVHLLIGLSL-FLLPVLKLIPMPVLYGVFLYMGVTSL 471 (510)
T ss_dssp --------------------------------------------
T ss_pred EecccHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHhheeeee
Confidence 36899999998887766 68899999999999999999887654
No 21
>KOG1292 consensus Xanthine/uracil transporters [Nucleotide transport and metabolism]
Probab=98.52 E-value=1e-05 Score=84.19 Aligned_cols=310 Identities=13% Similarity=0.110 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHhhCCCcc------hhHHHhhhhhHHHHhhcCCCccccchhHHHHHHHHHHHH--hhcCCC---C-Chh
Q 010524 103 SLCIPQSIGYATLAKLDPQ------YGLYTSVVPPLIYAVMGTSREIAIGPVAVVSLLLSSMIQ--KVQDPL---A-NPI 170 (508)
Q Consensus 103 ~~~iPq~iaya~laglpp~------~GLyss~v~~liy~lfGss~~~~~Gp~a~~sl~~~~~v~--~~~~~~---~-~~~ 170 (508)
.+.||.-++=++=+|-... .-+.++.+..++=..||+.-.+..||.-+.-.-+-+++. +...+. + +.+
T Consensus 29 ~v~iP~~lv~~m~~g~~~~~~~lIsT~~f~sGI~TllQt~fG~RLp~v~G~Sfafl~p~~~i~~~~~~~~~~~~~~~~~~ 108 (510)
T KOG1292|consen 29 TVLIPFLLVPLMCGGDEEKAVQLISTIFFVSGITTLLQTTFGTRLPLVQGPSFAFLPPALAIISLPRFTCITTPHETDTE 108 (510)
T ss_pred hhhhhhhhcccccCChHHHHHHHHHHHhhhccHHHHHHHHhhcccccccccceehhhHHHHHHhccccCCCCCcccchhH
Confidence 4556655553332222111 346677788889999999999999985433222222333 222211 1 111
Q ss_pred h---HHHHHHHHHHHHHHHHHHHhhhhh-hhHHhhccHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCCCCcHHHHHHHHH
Q 010524 171 A---YRNFVLTATFFAGIFQASFGLFRL-GFLIDILSHAAVVGFMAGAAIVIGLQQLKGLIGIPHFTNKTDAISVVKAVW 246 (508)
Q Consensus 171 ~---~~~~~~~~t~l~Gvi~~~lgllrl-G~l~~~ip~~vi~Gf~~gigl~I~~~Ql~~~lG~~~~~~~~~~~~~~~~~~ 246 (508)
. .++..-.+.++++++|.++|+.++ |.+.+|++.-.+.=.++-+|+-..... +
T Consensus 109 ~~~~~mr~iqGAlivas~vqiilG~sGl~g~l~rfi~Plti~P~v~lvgl~l~~~~-----------------------~ 165 (510)
T KOG1292|consen 109 RFQHRMREIQGALIVASLVQIILGFSGLWGNLLRFIGPLTIVPLVALVGLGLFQDG-----------------------F 165 (510)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHhhcCChhhhhHHHHHhhhhHHhh-----------------------h
Confidence 1 234556788999999999999997 889999998888777777666544211 1
Q ss_pred hhCCCCCchhHHHHHHHHHHHHHHHH-H--hhhchh---hhcccccchhHHHHHHHHHHHHHh---hcCCC-----Ce--
Q 010524 247 NSLHHTWSPQNFILGCSFLCFILTTR-Y--LGRKKR---KLFWLPAIAPLVSVILSTLFVFLT---RADKH-----GV-- 310 (508)
Q Consensus 247 ~~l~~~~~~~~~~ig~~~l~~ll~~~-~--~~~~~~---~~~~~p~~~~Li~ii~~t~i~~~~---~~~~~-----~v-- 310 (508)
.++.+ +|. +|+..+..+++.. + +.++.. +...+...+.++++.+.=++++.+ +...+ +.
T Consensus 166 ~~~~~--~we---I~l~~~llli~fsqy~~~~~~~~~~~~~~if~~f~vll~i~ivW~~~~iLT~tgay~~~~~~t~~~~ 240 (510)
T KOG1292|consen 166 PKLGK--HWE---ISLPEILLLILFSQYASLPKKGFGSRRIQIFSRFPVLLAIAIVWLYCFILTITGAYPYKPTTTQSSC 240 (510)
T ss_pred hhhhh--hee---ecHHHHHHHHHHHHhhhcccccccccccchHhhccHHHHHHHHHHHHHHHHhccccCCCccccCCcc
Confidence 11111 221 2333333333222 2 211111 111111112334444443444433 11111 00
Q ss_pred e-----Eeecccc-CCCCC-cccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----cCCcCCCChHHHHHhH
Q 010524 311 K-----IVKHIDR-GLNPS-SVHQIQFHGQHVGEVAKIGFVAAIVALAEAIAVGRSFASI----KGYRLDGNKEMVAMGF 379 (508)
Q Consensus 311 ~-----~vg~ip~-gl~~~-~~p~~~~~~~~~~~~~~~~~~~~iv~~~e~i~~~~~~a~~----~~~~id~nqEL~a~G~ 379 (508)
+ +...-|- ..|.| ++....|+......+ +..++++++|+++.=.+.++. .--+...||...-+|+
T Consensus 241 RTD~~~vi~~apWi~vPyP~QwG~P~f~~~~~f~m----~aa~~va~iES~G~y~a~ar~~~a~ppP~~~inRgi~~eGi 316 (510)
T KOG1292|consen 241 RTDRNGVISSAPWIRVPYPFQWGPPTFSAGLVFAM----MAASLVAMIESTGDYIACARLSSATPPPPSVLNRGIGWEGI 316 (510)
T ss_pred cccHhhhhccCCceeecCCCccCCCcccHHHHHHH----HHHHHHHHHHhcchHHHHHHHhcCCCCChhhhhhhhhhhhH
Confidence 0 1111110 12211 111112232223322 334667777776544433333 3334556999999999
Q ss_pred HHHHHhhhcccCCCchhhHhH-HhhhcCCcchHHHHHHHHHHHHHHHH--hhHHHhhhhHHHHHHHHH
Q 010524 380 MNIVGSFTSCYVATGSFSRSA-VNFRAGCESTVSNIVMAITVLISLEF--FTRLLYYTPMAILASIIM 444 (508)
Q Consensus 380 ~Ni~~s~fg~~p~~~s~srS~-vn~~~G~~T~ls~iv~a~~~ll~ll~--l~pl~~~iP~~vLa~iii 444 (508)
+.+++|+||.-.++..+++.. +-.-+...||..--++|.++++.-++ ++.+|+.||.++.|++.-
T Consensus 317 g~lL~gl~G~gtG~Tt~~ENigll~vTKVgSRrvvQ~aa~fmI~~~i~gKFgA~fAsIP~piv~~l~c 384 (510)
T KOG1292|consen 317 GSLLAGLFGTGTGSTTSVENIGLLGVTKVGSRRVVQIAAGFMIFFGIFGKFGAFFASIPDPIVGGLLC 384 (510)
T ss_pred HHHHHHhhCCCccceeeccceeeEeeeeeeeeeehhhhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999887776666543 33336677777777788877777766 899999999999999863
No 22
>PF11840 DUF3360: Protein of unknown function (DUF3360); InterPro: IPR021794 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 489 to 517 amino acids in length.
Probab=98.02 E-value=0.0026 Score=64.42 Aligned_cols=278 Identities=15% Similarity=0.166 Sum_probs=148.6
Q ss_pred ccccchhHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhh-HHhhccHHHHHHHHHHHHHHHHH
Q 010524 142 EIAIGPVAVVSLLLSSMIQKVQDPLANPIAYRNFVLTATFFAGIFQASFGLFRLGF-LIDILSHAAVVGFMAGAAIVIGL 220 (508)
Q Consensus 142 ~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~t~l~Gvi~~~lgllrlG~-l~~~ip~~vi~Gf~~gigl~I~~ 220 (508)
-...|.-+.+-.++..++..-++| .+..++.|++=++++.+|.|. +++.=++-|.+|.+-=.|+.=..
T Consensus 121 anLAGthgPmIpLIp~ivaaGgHP-----------Lalgilvg~fGlil~~~kggS~L~~LTs~gv~ggLllylG~~G~~ 189 (492)
T PF11840_consen 121 ANLAGTHGPMIPLIPLIVAAGGHP-----------LALGILVGVFGLILSIFKGGSKLVNLTSHGVCGGLLLYLGFVGLI 189 (492)
T ss_pred ccccCCCCCcchhhHHHHHcCCCc-----------HHHHHHHHHHHHHHHHhcchhHHHhhhcCccccceeeeehhhhHH
Confidence 334555555666666666655443 356789999999999999876 88888999998887777777777
Q ss_pred HhhhhhhCCCCCCCCCcHHHHHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHhhhchhhhcccccchhHHHHHHHHHHH
Q 010524 221 QQLKGLIGIPHFTNKTDAISVVKAVWNSLHHTWSPQNFILGCSFLCFILTTRYLGRKKRKLFWLPAIAPLVSVILSTLFV 300 (508)
Q Consensus 221 ~Ql~~~lG~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ig~~~l~~ll~~~~~~~~~~~~~~~p~~~~Li~ii~~t~i~ 300 (508)
+|++.++... ..++ ..+..+++-.+++++.....+++||| +.+| +.-+++-+++
T Consensus 190 ~qi~kl~~wa----------------~~~~--~~~i~fvvi~~tiv~Ya~L~k~~KrW-----LaIP---l~~~~a~~~a 243 (492)
T PF11840_consen 190 GQIKKLFAWA----------------NGFD--MGYIAFVVIIVTIVLYAYLAKIEKRW-----LAIP---LCSILAGVLA 243 (492)
T ss_pred HHHHHHHHHH----------------hccC--ccHHHHHHHHHHHHHHHHHHHhccch-----hhhh---HHHHHHHHHH
Confidence 8887765332 1111 12223333233333333333333443 2222 3344555556
Q ss_pred HHhhcCCCCeeEeeccccCCCCCccc-----c--cccch---hhHHHHHHHHHHHHHHHHHHHHHHHHHHhh------hc
Q 010524 301 FLTRADKHGVKIVKHIDRGLNPSSVH-----Q--IQFHG---QHVGEVAKIGFVAAIVALAEAIAVGRSFAS------IK 364 (508)
Q Consensus 301 ~~~~~~~~~v~~vg~ip~gl~~~~~p-----~--~~~~~---~~~~~~~~~~~~~~iv~~~e~i~~~~~~a~------~~ 364 (508)
+.++... +.. -+.|+|..+.- + +.+.. +.+...+|.++.....=.-|.++ -+.|.+ .+
T Consensus 244 ~~lGa~f---~f~--t~pglp~lnP~YWWge~tGw~LglP~~~hfiav~PFAiLAVaMWSpDflg-hrvFqelnypk~~~ 317 (492)
T PF11840_consen 244 FALGAPF---EFT--TEPGLPNLNPMYWWGEETGWQLGLPTLEHFIAVLPFAILAVAMWSPDFLG-HRVFQELNYPKETK 317 (492)
T ss_pred HHcCCCc---eee--cCCCCCCCCCcccccCCcccccCCCcHHHHHHhccHHHHHHHHhCchHHH-HHHHHHhcCchhhc
Confidence 6665321 111 12233322100 0 00111 12333344332211111112221 233332 13
Q ss_pred CCcCCCChHHHHHhHHHHHHhhhcccCCCchhhHhHHhhhcCCcc--hHHHHHHHHHHHHHHHHhhHHHhhhhHHHHHHH
Q 010524 365 GYRLDGNKEMVAMGFMNIVGSFTSCYVATGSFSRSAVNFRAGCES--TVSNIVMAITVLISLEFFTRLLYYTPMAILASI 442 (508)
Q Consensus 365 ~~~id~nqEL~a~G~~Ni~~s~fg~~p~~~s~srS~vn~~~G~~T--~ls~iv~a~~~ll~ll~l~pl~~~iP~~vLa~i 442 (508)
+...|-|+.+....+=|++|+.+||--.++|...-.+-.. =+|- +-..+.+|++++++.+...|.=-.+=.+++...
T Consensus 318 kvlMnvDDTm~~~siRQ~vGs~lGGgN~~SsWgTymIPaa-IaKRPIpggAiLtg~~Ci~~av~GyPMdlavw~Pvl~vA 396 (492)
T PF11840_consen 318 KVLMNVDDTMTMCSIRQIVGSILGGGNIASSWGTYMIPAA-IAKRPIPGGAILTGLLCIVAAVWGYPMDLAVWPPVLRVA 396 (492)
T ss_pred ceeecccchhHHHHHHHHHhhcccCCcccccchhhhhhHH-HhcCCCCchHHHHHHHHHHHHHhcCcchhhhcccHHHHH
Confidence 3457888999999999999999999876665554443333 2333 556788999888888777664222323455555
Q ss_pred HHHHhhc-cCChhHHHHHHccChh
Q 010524 443 IMSALPG-LIDFNEFYNIWKVDKL 465 (508)
Q Consensus 443 ii~~~~~-li~~~~~~~l~k~~~~ 465 (508)
+++-++- +.+ .=.+.||.+|.
T Consensus 397 LlvGVflPLle--AGmqm~r~~k~ 418 (492)
T PF11840_consen 397 LLVGVFLPLLE--AGMQMTRKGKT 418 (492)
T ss_pred HHHHHHHHHHH--HHHHHHhcCCc
Confidence 5553332 222 12255666654
No 23
>PRK10720 uracil transporter; Provisional
Probab=93.27 E-value=0.73 Score=49.19 Aligned_cols=52 Identities=12% Similarity=-0.006 Sum_probs=39.3
Q ss_pred HHHHHhHHHHHHhhhcccCCCchhhHhHHhhhcCCcchHHHHHHHHHHHHHH
Q 010524 373 EMVAMGFMNIVGSFTSCYVATGSFSRSAVNFRAGCESTVSNIVMAITVLISL 424 (508)
Q Consensus 373 EL~a~G~~Ni~~s~fg~~p~~~s~srS~vn~~~G~~T~ls~iv~a~~~ll~l 424 (508)
++...=.++=++++++++-++...+-.+-|...+++|+.++-.....-...+
T Consensus 261 ~~~r~l~adGlatii~glfG~~p~tty~en~g~ia~T~v~sr~v~~~a~~~l 312 (428)
T PRK10720 261 GLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITRVYSTWVIGGAAIIA 312 (428)
T ss_pred cccchHhhhhHHHHHHHhcCCCCccccccccceeeecccchhHHHHHHHHHH
Confidence 4566667788888888888777777788888888888888887766554444
No 24
>TIGR00815 sulP high affinity sulphate transporter 1. (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3- (out).
Probab=90.20 E-value=17 Score=40.34 Aligned_cols=117 Identities=11% Similarity=0.050 Sum_probs=78.3
Q ss_pred ccCChhhhHHHHHHHHHHHHHHHHHHHHHHHh----hC--CCcchhHHHhhhhhHHHHhhcCCCccccchhHHHHHHHHH
Q 010524 84 RNYKASKFRNDLMAGLTLASLCIPQSIGYATL----AK--LDPQYGLYTSVVPPLIYAVMGTSREIAIGPVAVVSLLLSS 157 (508)
Q Consensus 84 ~~y~~~~l~~DiiaGltv~~~~iPq~iaya~l----ag--lpp~~GLyss~v~~liy~lfGss~~~~~Gp~a~~sl~~~~ 157 (508)
+.++++.+..=+..+++++++..=+.++-+.- .| .++--=|.+..+..++-++||+.+....-.- +
T Consensus 251 ~~~~~~~~~~l~~~a~~ia~v~~~e~l~~a~~~~~~~~~~~d~n~El~a~G~~N~~~~~fg~~p~~~s~sr--------s 322 (563)
T TIGR00815 251 ITLDWELLPTLAPDAIAIAIVGLIESIAIARSFARMTGYKIDANQELVAQGIANIVGSFFSCYPATGSLSR--------T 322 (563)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHhhHHHHHHHHhCccCCCCcchH--------H
Confidence 34566677766778888888888888886642 22 5555679999999999999999775322111 1
Q ss_pred HHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhccHHHHHHHHHHHHHHH
Q 010524 158 MIQKVQDPLANPIAYRNFVLTATFFAGIFQASFGLFRLGFLIDILSHAAVVGFMAGAAIVI 218 (508)
Q Consensus 158 ~v~~~~~~~~~~~~~~~~~~~~t~l~Gvi~~~lgllrlG~l~~~ip~~vi~Gf~~gigl~I 218 (508)
.+..... .. - -...+++|++.+++.++ ++.+..++|.+++.|.+.-+++.+
T Consensus 323 ~~~~~~G-~~-----t---~~a~i~~~~~~l~~~l~-~~~~l~~iP~~~la~ili~~~~~l 373 (563)
T TIGR00815 323 AVNAKAG-CR-----T---QLSGVVTAIVVLLVLLV-LTPLFYYIPQAALAAIIISAVRGL 373 (563)
T ss_pred HHHHhcC-Cc-----c---hHHHHHHHHHHHHHHHH-HHHHHHhChHHHHHHHHHHHHhcc
Confidence 1111110 00 0 12456677776666665 677999999999999998888764
No 25
>COG0659 SUL1 Sulfate permease and related transporters (MFS superfamily) [Inorganic ion transport and metabolism]
Probab=86.94 E-value=14 Score=40.72 Aligned_cols=107 Identities=20% Similarity=0.170 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcCCCChHHHHHhHHHHHHhhhcccCCCch--hhHhHHhhhcCC----cc---
Q 010524 339 AKIGFVAAIVALAEAIAVGRSFASIKGYRLDGNKEMVAMGFMNIVGSFTSCYVATGS--FSRSAVNFRAGC----ES--- 409 (508)
Q Consensus 339 ~~~~~~~~iv~~~e~i~~~~~~a~~~~~~id~nqEL~a~G~~Ni~~s~fg~~p~~~s--~srS~vn~~~G~----~T--- 409 (508)
+..+++.+++.+=|+++.++. + | .++..-|.+-=++-++-++||+.|.--+ -+-+++...+.. .+
T Consensus 25 l~AGltva~valP~ama~a~~-a---G--v~p~~GLyas~i~~~v~alfGgs~~~i~GPt~a~~~v~a~~i~~~~~~g~~ 98 (554)
T COG0659 25 LLAGLTVAAVALPLAMAFAIA-A---G--VPPEAGLYASIVAGIIYALFGGSRGLISGPTGAFAVVLAAVIASLVETGLA 98 (554)
T ss_pred HHHHHHHHHHHhHHHHHHHHH-c---C--CCHHHHHHHHHHHHHHHHHHcCCccceeccchhhHHHHHHHHHHHHHHHHH
Confidence 335666777887777776662 2 2 7999999999999999999999984421 111222222111 12
Q ss_pred --hHHHHHHHHHHHHHHHH-hhHHHhhhhHHHHHHHHHHHhhccC
Q 010524 410 --TVSNIVMAITVLISLEF-FTRLLYYTPMAILASIIMSALPGLI 451 (508)
Q Consensus 410 --~ls~iv~a~~~ll~ll~-l~pl~~~iP~~vLa~iii~~~~~li 451 (508)
-.+.+.+|++.++..++ ++.+.+++|.+|+.|.+--+++.++
T Consensus 99 ~~~~~tllaGv~~i~~G~lRLG~li~fip~pVl~Gf~~Giai~I~ 143 (554)
T COG0659 99 LAFLATLLAGVFQILLGLLRLGRLIRFIPRPVLIGFTAGIAILII 143 (554)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHH
Confidence 34455566666666655 8999999999999998766555543
No 26
>COG2233 UraA Xanthine/uracil permeases [Nucleotide transport and metabolism]
Probab=86.04 E-value=3.9 Score=43.63 Aligned_cols=34 Identities=21% Similarity=0.138 Sum_probs=23.8
Q ss_pred HHHHHHHHH-HhhCCCcchhHHHhhhhhHHHHhhc
Q 010524 105 CIPQSIGYA-TLAKLDPQYGLYTSVVPPLIYAVMG 138 (508)
Q Consensus 105 ~iPq~iaya-~laglpp~~GLyss~v~~liy~lfG 138 (508)
.+=|..... .=+++|-..|-..+++++++...-.
T Consensus 66 Tllq~~~~~~~g~~lP~~lG~sFafi~p~i~~~~~ 100 (451)
T COG2233 66 TLLQLLGTGPGGSGLPSYLGSSFAFVAPMIAIGGT 100 (451)
T ss_pred HHHHHhhccCcccCCCeeEechHHHHHHHHHHHhc
Confidence 334555444 2247899999999999998887544
No 27
>TIGR03173 pbuX xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696, ) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.
Probab=83.44 E-value=21 Score=37.79 Aligned_cols=98 Identities=13% Similarity=0.121 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHH----HHHhhCCCc-----chhHHHhhhhhHHHHhhcCCCccccchhHHHHHHHHHHHHhhcCCCCCh
Q 010524 99 LTLASLCIPQSIG----YATLAKLDP-----QYGLYTSVVPPLIYAVMGTSREIAIGPVAVVSLLLSSMIQKVQDPLANP 169 (508)
Q Consensus 99 ltv~~~~iPq~ia----ya~laglpp-----~~GLyss~v~~liy~lfGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~ 169 (508)
++++++..-++++ .+...|-++ .-++.+-.+..++-++||+.+.... +..+-... ..+. .
T Consensus 225 ~~~~lv~~~esig~~~a~~~~~g~~~~~~~~~~~l~~~Gi~~i~aglfG~~p~t~~---~~~~~~~~----~tg~--~-- 293 (406)
T TIGR03173 225 IIVYLVSMVETTGDFLALGEITGRPITEKDLAGGLRADGLGSALGGLFNTFPYTSF---SQNVGLVQ----LTGV--K-- 293 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCchhccchHHhccHHHHHHHHhCCCCCcch---hhhHHHHH----HhCC--C--
Confidence 3444555554444 444555432 2689999999999999999775432 22111111 1110 0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhh-hhhhHHhhccHHHHHHHHHH
Q 010524 170 IAYRNFVLTATFFAGIFQASFGLF-RLGFLIDILSHAAVVGFMAG 213 (508)
Q Consensus 170 ~~~~~~~~~~t~l~Gvi~~~lgll-rlG~l~~~ip~~vi~Gf~~g 213 (508)
.+ .....+|++.++++++ +++.+..++|.||+.|.+-.
T Consensus 294 ---sr---~~~~~~~~~lil~~l~~~~~~l~~~iP~~vlgg~~l~ 332 (406)
T TIGR03173 294 ---SR---YVVAAAGVILVLLGLFPKLAALVASIPQPVLGGAGLV 332 (406)
T ss_pred ---ch---HhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 01 1336788888888887 68889999999999995553
No 28
>TIGR00801 ncs2 uracil-xanthine permease. NCS2 family appears to be distantly related to the NCS1 family (TC #2.A.39).
Probab=81.58 E-value=14 Score=39.25 Aligned_cols=112 Identities=19% Similarity=0.224 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHH----HHHhhCCCc------chhHHHhhhhhHHHHhhcCCCccccchhHHHHHHHHHHHHhhcCCCCC
Q 010524 99 LTLASLCIPQSIG----YATLAKLDP------QYGLYTSVVPPLIYAVMGTSREIAIGPVAVVSLLLSSMIQKVQDPLAN 168 (508)
Q Consensus 99 ltv~~~~iPq~ia----ya~laglpp------~~GLyss~v~~liy~lfGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~ 168 (508)
+.++++..-++++ .+..+|-++ .-++.+-.++.++-++||+.+.......... +.. ++
T Consensus 240 ~~i~lv~~~es~g~~~a~a~~~g~~~~~~~~~~r~l~adGl~~i~aglfG~~p~t~~sen~g~-------~~~-----T~ 307 (415)
T TIGR00801 240 LPVAIVSLVESIGDITATADVSGRDLSGDPRLHRGVLADGLATLLAGLFGGFPNTTFAQNIGV-------IAL-----TR 307 (415)
T ss_pred HHHHHHHHHHhhhHHHHHHHHhCCCCCCCccccchHHHhhHHHHHHHhcCCCCCcchhhhhee-------eee-----cC
Confidence 4455555555554 455676532 3689999999999999999776543221110 000 00
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhh-hhhhHHhhccHHHHHHHHHHHHHHHHHHhhhhhh
Q 010524 169 PIAYRNFVLTATFFAGIFQASFGLF-RLGFLIDILSHAAVVGFMAGAAIVIGLQQLKGLI 227 (508)
Q Consensus 169 ~~~~~~~~~~~t~l~Gvi~~~lgll-rlG~l~~~ip~~vi~Gf~~gigl~I~~~Ql~~~l 227 (508)
..-+ .+...+|++.+++|++ +++.++..+|.||+.|..-..--.+..+.++.+.
T Consensus 308 --~~sr---~~~~~~a~~~i~~~l~pk~~~l~~~iP~~vlgg~~l~~~~~i~~~gi~~l~ 362 (415)
T TIGR00801 308 --VASR---WVIVGAAVILIALGFFPKIAALITSIPSPVLGGASIVMFGMIAASGIRILI 362 (415)
T ss_pred --CCch---HHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0011 2557888888898888 6899999999999998887666666666555543
No 29
>PRK11412 putative uracil/xanthine transporter; Provisional
Probab=78.37 E-value=15 Score=39.32 Aligned_cols=53 Identities=9% Similarity=-0.150 Sum_probs=25.0
Q ss_pred ChHHHHHhHHHHHHhhhcccCCCchhhHhHHhhhcCCcchHHHHHHHHHHHHH
Q 010524 371 NKEMVAMGFMNIVGSFTSCYVATGSFSRSAVNFRAGCESTVSNIVMAITVLIS 423 (508)
Q Consensus 371 nqEL~a~G~~Ni~~s~fg~~p~~~s~srS~vn~~~G~~T~ls~iv~a~~~ll~ 423 (508)
++|+..=-.++=+++++++.-++-..+-.+-|.-.=+-|+..+-......-..
T Consensus 274 ~~~l~rgi~~dGi~s~laglfg~~p~tt~sqNvGvi~~TgV~SR~v~~~aa~i 326 (433)
T PRK11412 274 NTRYRRSFVATGFMTLITVPLAVIPFSPFVSSIGLLTQTGDYRRRSFIYGSVM 326 (433)
T ss_pred CcccccchhhccHHHHHHHhcCCCCCCchhhhhhhhhhcCCchhHHHHHHHHH
Confidence 33455555566666666665544333333333333235555555544444333
No 30
>PRK11660 putative transporter; Provisional
Probab=65.90 E-value=55 Score=36.30 Aligned_cols=169 Identities=11% Similarity=0.136 Sum_probs=120.2
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCCCChHHHHHhHHHHHHhhhcccCCCchhhHhHHhhhcC
Q 010524 327 QIQFHGQHVGEVAKIGFVAAIVALAEAIAVGRSFASIKGYRLDGNKEMVAMGFMNIVGSFTSCYVATGSFSRSAVNFRAG 406 (508)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~iv~~~e~i~~~~~~a~~~~~~id~nqEL~a~G~~Ni~~s~fg~~p~~~s~srS~vn~~~G 406 (508)
+++...+.+..++.++++..+.++.......+...++.+.+-+..-.=.+.=++.++|++.++-..+-+..+.....+++
T Consensus 274 ~~~~~~~ll~~a~~iaiv~~iesl~~~~~~~~~~~~~~d~n~EL~a~G~aNi~~~~fgg~p~~~s~srSa~n~~aGarT~ 353 (568)
T PRK11660 274 SWDLIRALLPAAFSMAMLGAIESLLCAVVLDGMTGTKHSANSELVGQGLGNIVAPFFGGITATAAIARSAANVRAGATSP 353 (568)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHhHHHHHHHHhCcccccchHHHHHHHHhcCCCcH
Confidence 33444567888888888888888877777777777888888888777788889999999988877688888889999988
Q ss_pred CcchHHHHHHHHHHHHH--HHHhhHHHhhhhHHHHHHHHHHHhhccCChhHHHHHHccChhhHHHHH-HHHHHHHHHHHH
Q 010524 407 CESTVSNIVMAITVLIS--LEFFTRLLYYTPMAILASIIMSALPGLIDFNEFYNIWKVDKLDFLACI-GAFFGVLFASVE 483 (508)
Q Consensus 407 ~~T~ls~iv~a~~~ll~--ll~l~pl~~~iP~~vLa~iii~~~~~li~~~~~~~l~k~~~~d~~i~~-~t~~~~~~~~v~ 483 (508)
-.+=.++++..+.++.. ++-.-|.-..=+.-+.+++-+.-.-.+.+ .+++..|.+..-+++++ .+++.-+..|+.
T Consensus 354 la~iv~a~~~ll~ll~l~~ll~~iP~~vLa~ili~~~~~m~~~~~~~~--~~~~~~~~d~~~~~~~~~~~~~~~~~~gi~ 431 (568)
T PRK11660 354 ISAVIHALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNMSEAHKVVD--LLRHAPKDDIIVMLLCMSLTVLFDMVIAIS 431 (568)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhhHHHHHH--HHHhCCHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 88888888887776555 44455555544555555555443223332 23344455666665554 466677889999
Q ss_pred HHHHHHHHHHHHHH
Q 010524 484 IGLLVAVIFLSCCL 497 (508)
Q Consensus 484 ~Gi~~gv~~s~l~~ 497 (508)
.|+.+++.+-..-.
T Consensus 432 ~Gi~~s~~~~~~~~ 445 (568)
T PRK11660 432 VGIVLASLLFMRRI 445 (568)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998755444
No 31
>TIGR03616 RutG pyrimidine utilization transport protein G. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the uracil-xanthine permease family defined by TIGR00801. As well as the The Nucleobase:Cation Symporter-2 (NCS2) Family (TC 2.A.40).
Probab=60.00 E-value=77 Score=33.84 Aligned_cols=109 Identities=17% Similarity=0.242 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHH----HHHhhC--CCc--chhHHHhhhhhHHHHhhcCCCccccchhHHHHHHHHHHHHhhcCCCCChh
Q 010524 99 LTLASLCIPQSIG----YATLAK--LDP--QYGLYTSVVPPLIYAVMGTSREIAIGPVAVVSLLLSSMIQKVQDPLANPI 170 (508)
Q Consensus 99 ltv~~~~iPq~ia----ya~lag--lpp--~~GLyss~v~~liy~lfGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~ 170 (508)
+...++..-++++ .+...| .++ .-|+.+-.+..++-++||+++....+-.... ++. +.
T Consensus 253 ~~~~lv~~~esiG~~~a~~~~~~~~~~~~i~r~l~adGl~t~~agl~g~~p~tt~~en~g~-------i~~-----T~-- 318 (429)
T TIGR03616 253 APVALILVAENLGHFKAVAGMTGRNLDPYMGRAFVGDGLATMLSGSVGGTGVTTYAENIGV-------MAV-----TK-- 318 (429)
T ss_pred HHHHHHHHHHhhHHHHHHHHHhCCCCCchhccchhhhhHHHHHHHhcCCCCCcceeeeeee-------eee-----cC--
Confidence 3334444445544 233444 333 3689999999999999999886533211100 000 00
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh-hhhhHHhhccHHHHHHHHHHHHHHHHHHhhh
Q 010524 171 AYRNFVLTATFFAGIFQASFGLF-RLGFLIDILSHAAVVGFMAGAAIVIGLQQLK 224 (508)
Q Consensus 171 ~~~~~~~~~t~l~Gvi~~~lgll-rlG~l~~~ip~~vi~Gf~~gigl~I~~~Ql~ 224 (508)
.+- -.+...+|++.+++|++ |++.++..+|.||+.|.+.-.--.+..+.++
T Consensus 319 v~S---R~v~~~a~~~lillgl~Pk~~al~~~IP~pVlgG~~i~~fg~i~~~Gi~ 370 (429)
T TIGR03616 319 VYS---TLVFVAAAVFAILLGFSPKFGALIHTIPVAVLGGASIVVFGLIAVAGAR 370 (429)
T ss_pred cch---HHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 000 12445778888888887 4899999999999999998777777777766
No 32
>PF00860 Xan_ur_permease: Permease family; InterPro: IPR006043 This entry represents a susbset of the wider APC (Amino acid-Polyamine-organoCation) superfamily of transporters []. Characterised proteins in this entry include: Xanthine permease PbuX, involved in cellualar xanthine transport [] Uric acid permeases which promotes uptake of uric acid into the cell in limiting-nitrogen conditions [] Uracil permease [] Sodium-dependent vitamin C transporter, a sodium/ascorbate cotransporter mediating electrogenic uptake of Vitamin C [] These proteins generally contain 12 transmembrane regions. Many members of this family are uncharacterised and may transport other substrates eg. RutG is likely to transport pyrimidines into the cell [].; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3QE7_A.
Probab=52.61 E-value=1.9e+02 Score=30.32 Aligned_cols=116 Identities=20% Similarity=0.244 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHhhCCCcc------hhHHHhhhhhHHHHhhcCCCccccchhHHHHHHHHHHHHhhc
Q 010524 94 DLMAGLTLASLCIPQSIG----YATLAKLDPQ------YGLYTSVVPPLIYAVMGTSREIAIGPVAVVSLLLSSMIQKVQ 163 (508)
Q Consensus 94 DiiaGltv~~~~iPq~ia----ya~laglpp~------~GLyss~v~~liy~lfGss~~~~~Gp~a~~sl~~~~~v~~~~ 163 (508)
.++.-+++.++..-.+++ .+..+|.++. -|+.+-.+..++-++||+++..+..-.+. .+.. .+..
T Consensus 233 ~i~~~~~~~lv~~~es~G~~~a~~~~~~~~~~~~~~~~r~l~~dg~~~~l~gl~G~~~~t~~~en~g---~i~~--t~v~ 307 (389)
T PF00860_consen 233 AILTFLIFALVAMFESIGTIVAVARIAGKDDPRPPRIRRGLLADGLGTILAGLFGTSPTTTYSENAG---GIAA--TGVA 307 (389)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHTS-TCCCCCHHHHHHHHHHHHHHHHHHT---EEE-HHHHH---HHHH--HTB-
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHHHHhCCCCccchhhcccceeeeeeeeechhhcCCCCccccccch---hhhh--hccc
Confidence 444555555666666655 2345664432 58999999999999999977654332222 1110 0000
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHHHhhh-hhhhHHhhccHHHHHHHHHHHHHHHHHHhhhhh
Q 010524 164 DPLANPIAYRNFVLTATFFAGIFQASFGLF-RLGFLIDILSHAAVVGFMAGAAIVIGLQQLKGL 226 (508)
Q Consensus 164 ~~~~~~~~~~~~~~~~t~l~Gvi~~~lgll-rlG~l~~~ip~~vi~Gf~~gigl~I~~~Ql~~~ 226 (508)
.--..+.+|++.++++++ +++.+..-+|.||+.|...-.--.++.++++.+
T Consensus 308 ------------Sr~~~~~a~~~~i~~~~~p~~~~l~~~IP~~v~gg~~lv~~g~i~~~gi~~i 359 (389)
T PF00860_consen 308 ------------SRRVGLTAGVILILFGLSPKFAPLFASIPSPVIGGPLLVLFGMIMMSGIRNI 359 (389)
T ss_dssp -------------HHHHHHHHHHHHHHT--HHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------cceeeeHHHHHHHHHhhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHhHhh
Confidence 012456777777788865 578899999999998887766666666776654
No 33
>PF00916 Sulfate_transp: Sulfate transporter family; InterPro: IPR011547 A number of proteins involved in the transport of sulphate across a membrane as well as some yet uncharacterised proteins have been shown [, ] to be evolutionary related. These proteins are: Neurospora crassa sulphate permease II (gene cys-14). Yeast sulphate permeases (genes SUL1 and SUL2). Rat sulphate anion transporter 1 (SAT-1). Mammalian DTDST, a probable sulphate transporter which, in human, is involved in the genetic disease, diastrophic dysplasia (DTD). Sulphate transporters 1, 2 and 3 from the legume Stylosanthes hamata. Human pendrin (gene PDS), which is involved in a number of hearing loss genetic diseases. Human protein DRA (Down-Regulated in Adenoma). Soybean early nodulin 70. Escherichia coli hypothetical protein ychM. Caenorhabditis elegans hypothetical protein F41D9.5. These proteins are highly hydrophobic and seem to contain about 12 transmembrane domains.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane
Probab=50.91 E-value=1.2e+02 Score=29.76 Aligned_cols=133 Identities=13% Similarity=0.053 Sum_probs=92.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCCCChHHHHHhHHHHHHhhhcccCCCchhhHhHHhhhcCCc
Q 010524 329 QFHGQHVGEVAKIGFVAAIVALAEAIAVGRSFASIKGYRLDGNKEMVAMGFMNIVGSFTSCYVATGSFSRSAVNFRAGCE 408 (508)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~iv~~~e~i~~~~~~a~~~~~~id~nqEL~a~G~~Ni~~s~fg~~p~~~s~srS~vn~~~G~~ 408 (508)
+...+.+..++.++++..+.+....-+.++....+.+.+-+.--.=.+.=++.++||+-+|..-+-+..+-..+.++...
T Consensus 144 ~~~~~~~~~a~~ia~v~~~~s~~~~~~~~~~~~~~~d~n~El~a~G~aNi~s~~~gg~p~~~s~srs~~~~~~Ga~t~~s 223 (280)
T PF00916_consen 144 SLILDLLPTALAIAIVGFIESLLIAKSIAKKTGYRIDPNQELIALGLANIVSGLFGGMPGSGSFSRSAVNYRAGARTRLS 223 (280)
T ss_pred ccccccchhHHHHHHHHHHHHHHhhhhhcccccccCCcHHHHHHhhhccccchhhcccccccccccchHHHhcCcceeeh
Confidence 33445677778888888888888777777777777777777776667888899999998888888888888889998888
Q ss_pred chHHHHHHHHHHHHHHHHhhHHHhhhhHHHHHHHHHHHhhccCChhHHHHHHcc
Q 010524 409 STVSNIVMAITVLISLEFFTRLLYYTPMAILASIIMSALPGLIDFNEFYNIWKV 462 (508)
Q Consensus 409 T~ls~iv~a~~~ll~ll~l~pl~~~iP~~vLa~iii~~~~~li~~~~~~~l~k~ 462 (508)
+-+++++..++++...-++..+=..+=-+++-.+.+- ..+.-+.+.+++.-|.
T Consensus 224 ~~~~~~~~l~~l~~~~~~l~~iP~~~La~ili~~~~~-l~~~~~~~~~~~~~~~ 276 (280)
T PF00916_consen 224 GLISALFVLLVLLFLAPLLAYIPKAVLAAILIVVGIS-LIDWSSLRRLWRVSKA 276 (280)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCHHHHHHHhcCChh
Confidence 9999999888777766554433223333333333333 4444444444444443
No 34
>PHA00736 hypothetical protein
Probab=49.80 E-value=1.1e+02 Score=23.34 Aligned_cols=68 Identities=18% Similarity=0.337 Sum_probs=47.0
Q ss_pred HHHHHHhhCCCcchhHHH-hhhhhHHHHhhcCCCccccchhHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHH
Q 010524 109 SIGYATLAKLDPQYGLYT-SVVPPLIYAVMGTSREIAIGPVAVVSLLLSSMIQKVQDPLANPIAYRNFVLTATFFAGIF 186 (508)
Q Consensus 109 ~iaya~laglpp~~GLys-s~v~~liy~lfGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~~~~~~~~t~l~Gvi 186 (508)
+++.|+-.|+.|+.+..- -..-++-|-.-|..|.+..|-.+..+++.-..+- .+|.......+++|.+
T Consensus 4 aislal~tglgpvi~viiil~mmgltykmagkipaii~giastf~lmfmdflp----------lfwgi~vifgliag~v 72 (79)
T PHA00736 4 AISLALQTGLGPVIAIIIILAMMGLTYKMAGKIPAILVGIASTFTLMFMDFLP----------LFWGITVIFGLIAGLV 72 (79)
T ss_pred HHHHHHHcCCccHHHHHHHHHHHhhHHHHhCCccHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHh
Confidence 677788899999877543 3456788888899888888877777666543322 3465555556666654
No 35
>TIGR00843 benE benzoate transporter. The benzoate transporter family contains only a single characterised member, the benzoate transporter of Acinetobacter calcoaceticus, which functions as a benzoate/proton symporter.
Probab=48.39 E-value=3.6e+02 Score=28.55 Aligned_cols=104 Identities=19% Similarity=0.146 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCCCCh-------HHHHHhHHHHHHhhhcccCCCchhhH--hHHh-hhcCC
Q 010524 338 VAKIGFVAAIVALAEAIAVGRSFASIKGYRLDGNK-------EMVAMGFMNIVGSFTSCYVATGSFSR--SAVN-FRAGC 407 (508)
Q Consensus 338 ~~~~~~~~~iv~~~e~i~~~~~~a~~~~~~id~nq-------EL~a~G~~Ni~~s~fg~~p~~~s~sr--S~vn-~~~G~ 407 (508)
.+..+++..++++..+..+.-.-++.-| .|++| -.++.|++.++=|..-=+|.....|- .+.- ...+.
T Consensus 23 ~~~aG~va~lvg~~~~~~iv~~a~~~~g--~s~aq~~swl~a~~~~~Gl~ti~lS~~~r~Pi~~awStPGaAll~~~~~~ 100 (395)
T TIGR00843 23 TLIAGFLAVLIGYAGPAAIFFQAAIKAG--ASTAMIIGWITAIGIAAAVSGIFLSIRFKTPVLTAWSAPGAALLVTGFPG 100 (395)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeecCchHHHHHHHhcCC
Confidence 3556777788888877666544433333 33333 44677888888777778888777772 1222 11221
Q ss_pred cchH-----HHHHHHHHHHHHHH--HhhHHHhhhhHHHHHHHHH
Q 010524 408 ESTV-----SNIVMAITVLISLE--FFTRLLYYTPMAILASIIM 444 (508)
Q Consensus 408 ~T~l-----s~iv~a~~~ll~ll--~l~pl~~~iP~~vLa~iii 444 (508)
-.+ +.+++|+++++..+ .+..+.++||.++..+++-
T Consensus 101 -~~~~eavGAfiv~g~lilllGltG~f~rl~~~IP~~Va~amLA 143 (395)
T TIGR00843 101 -ISLNEAIAAFITAAALIFLCGITGLFAKLLKIIPHGIAAAMLA 143 (395)
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 223 44556665555433 3778899999999999983
No 36
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=41.47 E-value=2.5e+02 Score=28.32 Aligned_cols=118 Identities=14% Similarity=0.077 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHhhCCCcchh-----HHHhhhhhHHHHhhcCCCccccchhHHHHHHHHHHHHhhcCCCCChhhH
Q 010524 98 GLTLASLCIPQSIGYATLAKLDPQYG-----LYTSVVPPLIYAVMGTSREIAIGPVAVVSLLLSSMIQKVQDPLANPIAY 172 (508)
Q Consensus 98 Gltv~~~~iPq~iaya~laglpp~~G-----Lyss~v~~liy~lfGss~~~~~Gp~a~~sl~~~~~v~~~~~~~~~~~~~ 172 (508)
-...+.+.+|-...|-.-++.....+ +..+++-++.++.-=+...+..-|....+.++.+.+-.+.... +++.
T Consensus 140 Aaila~iviP~~~~y~ln~~~~s~~~~R~~ll~~a~~QGvL~Ga~ls~~~l~sePf~~LT~iv~sfi~~~i~~~--~~~R 217 (299)
T PF05884_consen 140 AAILAYIVIPLIAYYYLNKEDGSLAESRLALLFFALFQGVLVGAGLSHLYLSSEPFIALTPIVSSFIYPLIAGH--GTNR 217 (299)
T ss_pred HHHHHHHHHHHHHHhhcccccCchHHHHHHHHHHHHHHHHHHHHHhhcccccCCcHHHHHHHHHHHHHHHHccC--Ccch
Confidence 34556788998888833233333322 3445555555554444566777899999888887766665422 2222
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhHHhhccHHHHHHHHHHHHHHHHH
Q 010524 173 RNFVLTATFFAGIFQASFGLFRLGFLIDILSHAAVVGFMAGAAIVIGL 220 (508)
Q Consensus 173 ~~~~~~~t~l~Gvi~~~lgllrlG~l~~~ip~~vi~Gf~~gigl~I~~ 220 (508)
......++-.+=++++.+|.. .|.+.. |+-++.++=+.+++.++.
T Consensus 218 ~~lLg~~vg~s~l~H~~iG~i-~G~Ls~--~YllLt~lYTl~s~~~IQ 262 (299)
T PF05884_consen 218 QKLLGIVVGTSFLFHLLIGII-FGSLSF--SYLLLTALYTLASIAPIQ 262 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HccccH--HHHHHHHHHHHHHHHHHH
Confidence 222222222222345566665 455544 888888988888887763
No 37
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=40.59 E-value=99 Score=32.46 Aligned_cols=181 Identities=16% Similarity=0.134 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhh---hhhhHHhhc-cHHHHHHHHHHHHHHHHHHhhhhhhCCCCCCCCCcHHHHHHHHH
Q 010524 171 AYRNFVLTATFFAGIFQASFGLF---RLGFLIDIL-SHAAVVGFMAGAAIVIGLQQLKGLIGIPHFTNKTDAISVVKAVW 246 (508)
Q Consensus 171 ~~~~~~~~~t~l~Gvi~~~lgll---rlG~l~~~i-p~~vi~Gf~~gigl~I~~~Ql~~~lG~~~~~~~~~~~~~~~~~~ 246 (508)
++.+.=...|+...++.+++|-+ |+.++-+|- |+||+.|++.++-.....+-...-++++
T Consensus 1 ~~~~~n~~~tl~~a~lllllG~~l~kki~fl~k~~IPepVvgG~i~ail~~~~~~~~~~~~~fd---------------- 64 (404)
T COG0786 1 MEIHLNALETLILAILLLLLGRFLVKKIKFLKKYCIPEPVVGGLIFAILLLLLHGFGGVSLNFD---------------- 64 (404)
T ss_pred CceehhHHHHHHHHHHHHHHHHHHHHHhHHHHHccCCcchHHHHHHHHHHHHHHhcceEEEeCC----------------
Q ss_pred hhCCCCCchhHHHHHHHHHHHHHH--HHHhhhchhhhcccccchhHHHH---HHHHHHHHHhhcCCCCeeEeecccc--C
Q 010524 247 NSLHHTWSPQNFILGCSFLCFILT--TRYLGRKKRKLFWLPAIAPLVSV---ILSTLFVFLTRADKHGVKIVKHIDR--G 319 (508)
Q Consensus 247 ~~l~~~~~~~~~~ig~~~l~~ll~--~~~~~~~~~~~~~~p~~~~Li~i---i~~t~i~~~~~~~~~~v~~vg~ip~--g 319 (508)
.+.++..+-..+..+-+- .+.++|..++..++-..+..+++ +++..++.+.+.|..---..|+++- |
T Consensus 65 ------~~l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GG 138 (404)
T COG0786 65 ------TSLQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGG 138 (404)
T ss_pred ------cccccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCC
Q ss_pred CCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hcCCcCCCChH
Q 010524 320 LNPSSVHQIQFHGQHVGEVAKIGFVAAIVALAEAIAVGRSFAS----IKGYRLDGNKE 373 (508)
Q Consensus 320 l~~~~~p~~~~~~~~~~~~~~~~~~~~iv~~~e~i~~~~~~a~----~~~~~id~nqE 373 (508)
.-.-.--.-.|...-..++..+++..+-++++-...++--+++ |++.+.++++|
T Consensus 139 HGtaAA~~~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~k~~l~~~~~~~ 196 (404)
T COG0786 139 HGTAAAWGPTFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIKKNKLKPDPTKD 196 (404)
T ss_pred CchHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHHhcCCCCCCCCC
No 38
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=36.58 E-value=1e+02 Score=29.08 Aligned_cols=55 Identities=13% Similarity=0.092 Sum_probs=42.4
Q ss_pred hhhhHHHHHHHHHHHhhccC-ChhHHHHHHccChhhHHHHHHHHHHHHHHHHHHHH
Q 010524 432 YYTPMAILASIIMSALPGLI-DFNEFYNIWKVDKLDFLACIGAFFGVLFASVEIGL 486 (508)
Q Consensus 432 ~~iP~~vLa~iii~~~~~li-~~~~~~~l~k~~~~d~~i~~~t~~~~~~~~v~~Gi 486 (508)
..+...+|-..++.+|.++- |.+.++++++.++.-..+-+.+.++++..+...+.
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g~~~Llipl~tIlGSllgg~l~~~ 78 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLGKRALLIPLATILGSLLGGLLASL 78 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888899999999985 66778899999998888777777777665554443
No 39
>COG1296 AzlC Predicted branched-chain amino acid permease (azaleucine resistance) [Amino acid transport and metabolism]
Probab=32.10 E-value=85 Score=30.75 Aligned_cols=48 Identities=27% Similarity=0.324 Sum_probs=35.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHhhCCCcchhHHHhhhhhHHHH
Q 010524 88 ASKFRNDLMAGLTLASLCIPQSIGYATLAKLDPQYGLYTSVVPPLIYA 135 (508)
Q Consensus 88 ~~~l~~DiiaGltv~~~~iPq~iaya~laglpp~~GLyss~v~~liy~ 135 (508)
.+++++.+.+++-+.+-.+|-|++|+.++.-.-..-+++.+...++|+
T Consensus 9 ~~~f~~G~~~~~Pi~lg~ip~Gl~fG~~a~~~G~s~~e~~lmS~~iyA 56 (238)
T COG1296 9 RAEFRQGLKASLPILLGYLPIGLAFGLLAVALGFSPLEAILMSLLIYA 56 (238)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHc
Confidence 356899999999999999999999998864332333556666677775
No 40
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=31.92 E-value=5.3e+02 Score=25.70 Aligned_cols=30 Identities=7% Similarity=0.183 Sum_probs=23.5
Q ss_pred HhhhhhhhHHhhccHHHHHHHHHHHHHHHH
Q 010524 190 FGLFRLGFLIDILSHAAVVGFMAGAAIVIG 219 (508)
Q Consensus 190 lgllrlG~l~~~ip~~vi~Gf~~gigl~I~ 219 (508)
+|---...+++.+|+.+..|+..+.|+.=+
T Consensus 161 ~G~~~v~~il~~iP~~v~~Gl~vaggmLPA 190 (265)
T TIGR00822 161 VSQSAVQAMLKAIPEVVTHGLQIAGGIIVV 190 (265)
T ss_pred cCHHHHHHHHHHCHHHHHHHHHHHHhhHHH
Confidence 344446678999999999999998887654
No 41
>PF07178 TraL: TraL protein; InterPro: IPR009838 This entry represents bacterial TraL proteins. TraL is a predicted peripheral membrane protein involved in bacterial sex pilus assembly []. TraL is part of the type IV secretion system for conjugative plasmid transfer []. The exact function of TraL is unknown.; GO: 0000746 conjugation, 0019867 outer membrane
Probab=30.29 E-value=1.7e+02 Score=24.13 Aligned_cols=44 Identities=16% Similarity=0.204 Sum_probs=28.9
Q ss_pred cChhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHhccCC
Q 010524 462 VDKLDFLACIGAFFGVLFAS-VEIGLLVAVIFLSCCLTNKKSEPN 505 (508)
Q Consensus 462 ~~~~d~~i~~~t~~~~~~~~-v~~Gi~~gv~~s~l~~~~r~s~p~ 505 (508)
.+.+|+++.++.+...++.+ ..+|+++|+++....--.|+.++.
T Consensus 18 ~~~De~~~~~~~~~~gi~~~~~~~g~i~g~~~~~~~~k~K~~~~~ 62 (95)
T PF07178_consen 18 WPMDEFIPALILFVIGILSGHFLIGLILGIVLWWGYRKFKKGRGR 62 (95)
T ss_pred ecHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHccCCc
Confidence 34456777666666544444 568888888877777766666654
No 42
>PF01384 PHO4: Phosphate transporter family; InterPro: IPR001204 The PHO-4 family of transporters includes the phosphate-repressible phosphate permease (PHO-4) from Neurospora crassa which is probably a sodium-phosphate symporter []. This family also includes the human leukemia virus receptor.; GO: 0005315 inorganic phosphate transmembrane transporter activity, 0006817 phosphate ion transport, 0016020 membrane
Probab=29.80 E-value=5.4e+02 Score=26.35 Aligned_cols=71 Identities=8% Similarity=0.115 Sum_probs=42.7
Q ss_pred cCCCChHHHHHhHHHHHHhhhcccCCCchhhHhHHhhhcCC----cchHHHHHHHHHHHHHHHHhhHHHhhhhHHH
Q 010524 367 RLDGNKEMVAMGFMNIVGSFTSCYVATGSFSRSAVNFRAGC----ESTVSNIVMAITVLISLEFFTRLLYYTPMAI 438 (508)
Q Consensus 367 ~id~nqEL~a~G~~Ni~~s~fg~~p~~~s~srS~vn~~~G~----~T~ls~iv~a~~~ll~ll~l~pl~~~iP~~v 438 (508)
-.+++|.++--++.|++|+++.|..+.....+..++...-. +.-+.+++++++...+.+.++-. .-+|...
T Consensus 18 al~~~~A~ila~i~~~lGa~l~G~~V~~ti~~~iv~~~~~~~~~~~~~~~~~~~al~~a~iw~~i~t~-~glPvSt 92 (326)
T PF01384_consen 18 ALTPRQALILAAIFNFLGALLFGTAVAETIGKGIVDPSYFTVDDPQILMIGMLAALLAAAIWLLIATW-LGLPVST 92 (326)
T ss_pred ccCHHHHHHHHHHHHHhHHHHhhHHHHHHHHhccccccccccccchHHHHHHHHHHHHHHHHHHHHHH-hCCCchH
Confidence 37889999999999999999987776665665555554332 11133444444443333333333 3466643
No 43
>PRK12600 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=29.19 E-value=1.1e+02 Score=25.40 Aligned_cols=31 Identities=16% Similarity=0.131 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcCC
Q 010524 339 AKIGFVAAIVALAEAIAVGRSFASIKGYRLD 369 (508)
Q Consensus 339 ~~~~~~~~iv~~~e~i~~~~~~a~~~~~~id 369 (508)
+..+++.+++++..+++.+|-+++.+-.+.|
T Consensus 61 ldvalvlAll~Fv~tva~Aryl~~g~~~~~~ 91 (94)
T PRK12600 61 LEVILLIGILAFIGTAAFSKFIEKGKVIERD 91 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCcCC
Confidence 4567778999999999999988654444434
No 44
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=29.04 E-value=96 Score=27.79 Aligned_cols=27 Identities=11% Similarity=0.220 Sum_probs=16.7
Q ss_pred HHhhhchhhhcccccchhHHHHHHHHH
Q 010524 272 RYLGRKKRKLFWLPAIAPLVSVILSTL 298 (508)
Q Consensus 272 ~~~~~~~~~~~~~p~~~~Li~ii~~t~ 298 (508)
...++-..+.+.+|.|++++++++-.+
T Consensus 20 ~~lGe~i~~ll~lPiPGsViGMlLL~l 46 (141)
T PRK04125 20 MLISNIIASFLPIPMPASVIGLVLLFV 46 (141)
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 333444455556788888888766543
No 45
>COG4129 Predicted membrane protein [Function unknown]
Probab=28.67 E-value=2.4e+02 Score=29.06 Aligned_cols=86 Identities=16% Similarity=0.210 Sum_probs=46.1
Q ss_pred hcCCcchHHHHHHHHHHHHHHHHhhHHHhhhhHHHHHHHHHHHhhccCChhHHHHHHccChhhHHHHHHHHHHHHH----
Q 010524 404 RAGCESTVSNIVMAITVLISLEFFTRLLYYTPMAILASIIMSALPGLIDFNEFYNIWKVDKLDFLACIGAFFGVLF---- 479 (508)
Q Consensus 404 ~~G~~T~ls~iv~a~~~ll~ll~l~pl~~~iP~~vLa~iii~~~~~li~~~~~~~l~k~~~~d~~i~~~t~~~~~~---- 479 (508)
+.|.||=-+++.+++.++++-++ -.|.++.|+|.-+....--..+.++..|+.=. ...+..+++.++
T Consensus 8 ~ig~RtlKt~ia~~La~~ia~~l------~~~~~~~A~i~AV~~l~~t~~~s~~~~~~r~~---g~~iG~~~a~l~~~l~ 78 (332)
T COG4129 8 KIGARTLKTGLAAGLALLIAHLL------GLPQPAFAGISAVLCLSPTIKRSLKRALQRLL---GNALGAILAVLFFLLF 78 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh------CCCchHHHHHHHhhcccCcchHHHHHHHHHHH---HHHHHHHHHHHHHHHc
Confidence 46778888888887777776622 36778888887665444333344444333111 112222223222
Q ss_pred --HHHHHHHHHHHHHHHHHHH
Q 010524 480 --ASVEIGLLVAVIFLSCCLT 498 (508)
Q Consensus 480 --~~v~~Gi~~gv~~s~l~~~ 498 (508)
..+..|+.+.+.+.++..+
T Consensus 79 g~~~~~~~v~~~i~i~~~~~~ 99 (332)
T COG4129 79 GQNPIAFGVVLLIIIPLLVLL 99 (332)
T ss_pred CccHHHHHHHHHHHHHHHHHH
Confidence 1344566666666555554
No 46
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=27.79 E-value=4.3e+02 Score=25.62 Aligned_cols=83 Identities=11% Similarity=0.150 Sum_probs=46.5
Q ss_pred cchHHHHHHHHHHHHHHHHhhHHHhhhhHHHHHHHHHHHhhccCChhHHHHHHc--cChhhHHHHHHHHHHHHHHHHHHH
Q 010524 408 ESTVSNIVMAITVLISLEFFTRLLYYTPMAILASIIMSALPGLIDFNEFYNIWK--VDKLDFLACIGAFFGVLFASVEIG 485 (508)
Q Consensus 408 ~T~ls~iv~a~~~ll~ll~l~pl~~~iP~~vLa~iii~~~~~li~~~~~~~l~k--~~~~d~~i~~~t~~~~~~~~v~~G 485 (508)
+++...++.|+..+++++. |-++++.++-+++++-.+..+++ -++.+.---..+++--+++++.+-
T Consensus 144 ~k~~k~~~~gi~aml~Vf~------------LF~lvmt~g~d~m~fl~v~~ly~~ia~~ik~se~~~~~lwyi~Y~vPY~ 211 (230)
T PF03904_consen 144 QKRQKSMYKGIGAMLFVFM------------LFALVMTIGSDFMDFLHVDHLYKAIASKIKASESFWTYLWYIAYLVPYI 211 (230)
T ss_pred HHHHHHHHHhHHHHHHHHH------------HHHHHHHhcccchhhhhHHHHHHHHHHHHhhhHhHHHHHHHHHHhhHHH
Confidence 4555666666655554422 33444555666666655555543 122222222444555677888888
Q ss_pred HHHHHHHHHHHHHhHhc
Q 010524 486 LLVAVIFLSCCLTNKKS 502 (508)
Q Consensus 486 i~~gv~~s~l~~~~r~s 502 (508)
+.+|..+.+.-.++.+-
T Consensus 212 ~~ig~~i~l~~~~~~~~ 228 (230)
T PF03904_consen 212 FAIGLFIYLYEWIRAKF 228 (230)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 87888777777666543
No 47
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=26.61 E-value=3.9e+02 Score=28.32 Aligned_cols=40 Identities=20% Similarity=0.394 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHhhh---hhhhHHh-hccHHHHHHHHHHHHHHHH
Q 010524 180 TFFAGIFQASFGLF---RLGFLID-ILSHAAVVGFMAGAAIVIG 219 (508)
Q Consensus 180 t~l~Gvi~~~lgll---rlG~l~~-~ip~~vi~Gf~~gigl~I~ 219 (508)
|+....+.+++|.. |..++.| ++|.||+.|++.++.+.+.
T Consensus 8 t~~la~~lLllG~~Lr~kv~~Lqk~~IPapViGGll~al~l~l~ 51 (398)
T TIGR00210 8 TLVVAILVLLLGRYLVKKIKFLKSFNIPEPVVGGVLVALALLLI 51 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 34444455555543 3444544 6799999999998777665
No 48
>PRK12657 putative monovalent cation/H+ antiporter subunit F; Reviewed
Probab=24.63 E-value=1.4e+02 Score=25.18 Aligned_cols=31 Identities=10% Similarity=0.186 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCcCC
Q 010524 339 AKIGFVAAIVALAEAIAVGRSFASIKGYRLD 369 (508)
Q Consensus 339 ~~~~~~~~iv~~~e~i~~~~~~a~~~~~~id 369 (508)
+..++++++++|+.+++.+|-+++++-.+-|
T Consensus 65 ldvaLvlAll~Fv~tva~ARyl~~g~~~~~~ 95 (100)
T PRK12657 65 LDSIMLIAIISFVSSVSISRFIGGGHVFNGN 95 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCccCC
Confidence 5567788999999999999988665444433
No 49
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=22.75 E-value=3.8e+02 Score=26.68 Aligned_cols=64 Identities=23% Similarity=0.367 Sum_probs=45.6
Q ss_pred CCCChHHHHHhHHHHHHhhhcccCCCchhhHhHHhhhcCCcchHHHHHHHHHHHHHHHHhhHHHh
Q 010524 368 LDGNKEMVAMGFMNIVGSFTSCYVATGSFSRSAVNFRAGCESTVSNIVMAITVLISLEFFTRLLY 432 (508)
Q Consensus 368 id~nqEL~a~G~~Ni~~s~fg~~p~~~s~srS~vn~~~G~~T~ls~iv~a~~~ll~ll~l~pl~~ 432 (508)
+-..-||..+|..|+-++ .--=+.+++.-.|...+.+|-.++-+..-.++-+.....++.-+.+
T Consensus 51 iGatLEL~~LG~~~iGga-vpPD~~~~si~~t~~aI~sg~~~~~~a~~lAiPiA~a~q~l~~~~r 114 (265)
T COG3715 51 IGATLELAALGWANIGGA-VPPDVALASIIGTAFAITSGQGIPEAALALAIPIAVAGQFLTTFVR 114 (265)
T ss_pred HhHHHHHHHHhCcCcccC-CCCchHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345568999999998763 3334567888899999999988777666666666666655555544
No 50
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=22.04 E-value=1.5e+02 Score=25.93 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 010524 479 FASVEIGLLVAVIFLSCCLTN 499 (508)
Q Consensus 479 ~~~v~~Gi~~gv~~s~l~~~~ 499 (508)
.+|+..|+ +|+++-+.++++
T Consensus 70 i~gv~aGv-Ig~Illi~y~ir 89 (122)
T PF01102_consen 70 IFGVMAGV-IGIILLISYCIR 89 (122)
T ss_dssp HHHHHHHH-HHHHHHHHHHHH
T ss_pred hHHHHHHH-HHHHHHHHHHHH
Confidence 34555555 344443333333
No 51
>PRK09410 ulaA PTS system ascorbate-specific transporter subunit IIC; Reviewed
Probab=21.25 E-value=8.6e+02 Score=26.24 Aligned_cols=107 Identities=17% Similarity=0.184 Sum_probs=58.6
Q ss_pred chhHHHhhhhhHHHHhh---cCCCccccchhHHHHHHHHHHH-HhhcCCCCChhh-------------HHHHHHHHHHHH
Q 010524 121 QYGLYTSVVPPLIYAVM---GTSREIAIGPVAVVSLLLSSMI-QKVQDPLANPIA-------------YRNFVLTATFFA 183 (508)
Q Consensus 121 ~~GLyss~v~~liy~lf---Gss~~~~~Gp~a~~sl~~~~~v-~~~~~~~~~~~~-------------~~~~~~~~t~l~ 183 (508)
..|+|....|-+..-.. -+.+..++|=...........+ ...+.+++++|+ ....+.+...+-
T Consensus 155 llgi~~~i~p~l~qp~~~kitg~dgiaigH~~~~~~~i~~~ig~~~G~k~~s~E~iklpkkLgff~D~~Vs~~i~M~i~f 234 (452)
T PRK09410 155 LLGLYWAISPAITQKYTRKVTGNDGFAIGHFQSLGYWLAGKVGKLFGKKEKSTEDIKLPKSLSFLRDSTVSTAITMTIFF 234 (452)
T ss_pred HHHHHHHHHHHHHhHHHHHHcCCCCeeecchhhHHHHHHHHHHHHhCCCCCCcchhhcchhhecccCcHHHHHHHHHHHH
Confidence 35667777776666433 2346777775555544444333 334444444433 122233333333
Q ss_pred HHHHHHHhhhhhhhH---HhhccHHHHHHHHHHHHHHHHHHhhhhhh
Q 010524 184 GIFQASFGLFRLGFL---IDILSHAAVVGFMAGAAIVIGLQQLKGLI 227 (508)
Q Consensus 184 Gvi~~~lgllrlG~l---~~~ip~~vi~Gf~~gigl~I~~~Ql~~~l 227 (508)
++..+..|.--+... .+|+=+++..|++-++|+.++....+-++
T Consensus 235 ~i~~~~~g~~~~~~~~~~~~~~~~~~~q~l~F~ag~~ill~GVRm~i 281 (452)
T PRK09410 235 LIAALFAGIEYVEEMAGGQNFIVYILMQGLTFAAGVFIILQGVRMFL 281 (452)
T ss_pred HHHHHHcCHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 333333332222222 46788999999999999999977666544
No 52
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=21.04 E-value=8.3e+02 Score=24.31 Aligned_cols=30 Identities=13% Similarity=0.156 Sum_probs=22.9
Q ss_pred HhhhhhhhHHhhccHHHHHHHHHHHHHHHH
Q 010524 190 FGLFRLGFLIDILSHAAVVGFMAGAAIVIG 219 (508)
Q Consensus 190 lgllrlG~l~~~ip~~vi~Gf~~gigl~I~ 219 (508)
+|---...+++.+|..+..|+..+-|+.=+
T Consensus 162 fG~~~v~~~~~~iP~~v~~GL~vaggmLPA 191 (267)
T PRK09757 162 LAQGAMQALVKAMPAWLTHGFEVAGGILPA 191 (267)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 344446678999999999999887776544
No 53
>COG0628 yhhT Predicted permease, member of the PurR regulon [General function prediction only]
Probab=20.42 E-value=6.7e+02 Score=25.64 Aligned_cols=39 Identities=26% Similarity=0.374 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHhhC---CCcchhHHHhhhhhHHHHhhcCC
Q 010524 102 ASLCIPQSIGYATLAK---LDPQYGLYTSVVPPLIYAVMGTS 140 (508)
Q Consensus 102 ~~~~iPq~iaya~lag---lpp~~GLyss~v~~liy~lfGss 140 (508)
.++-+|.++..|.++| +=|..|-..+.+|..+|+++-+.
T Consensus 228 ~ilgvp~alllgil~g~~~lIP~iG~~i~~ip~~i~al~~~~ 269 (355)
T COG0628 228 LILGVPYALLLGLLAGLLSLIPYIGPVIGLIPAVIIALLQGG 269 (355)
T ss_pred HHHcccHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHhcc
Confidence 3567788888887654 67889999999999999998653
No 54
>PF07613 DUF1576: Protein of unknown function (DUF1576); InterPro: IPR011470 This small family is found in several undescribed proteins. The alignment is distinguished by the frequent occurrence of conserved glycine and aromatic residues.
Probab=20.22 E-value=7.2e+02 Score=23.29 Aligned_cols=15 Identities=13% Similarity=0.036 Sum_probs=8.3
Q ss_pred HHHHHHHHHHhhccC
Q 010524 437 AILASIIMSALPGLI 451 (508)
Q Consensus 437 ~vLa~iii~~~~~li 451 (508)
++++++..+++++.+
T Consensus 64 p~iaaiftv~GFs~F 78 (183)
T PF07613_consen 64 PTIAAIFTVVGFSAF 78 (183)
T ss_pred HHHHHHHHHHHHHHc
Confidence 455555555555555
No 55
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=20.05 E-value=9.1e+02 Score=24.55 Aligned_cols=42 Identities=12% Similarity=0.157 Sum_probs=31.8
Q ss_pred HhhhcccCCCchhhHhHHhhhcCCcchHHHHHHHHHHHHHHHH
Q 010524 384 GSFTSCYVATGSFSRSAVNFRAGCESTVSNIVMAITVLISLEF 426 (508)
Q Consensus 384 ~s~fg~~p~~~s~srS~vn~~~G~~T~ls~iv~a~~~ll~ll~ 426 (508)
.++|+++|+. ...=..+..+.|+.++...++..+=++++.+.
T Consensus 85 TA~~~~~PGg-~s~m~~la~~~gad~~~Va~~q~lRl~~Vv~~ 126 (318)
T PF05145_consen 85 TAFFASMPGG-LSEMVALAEEYGADTRRVALVQSLRLLLVVLL 126 (318)
T ss_pred HHHHHcCCcc-HHHHHHHHHHcCCChhhhHHHHHHHHHHHHHH
Confidence 6899999944 34446777889999999999988766666544
Done!