Query 010524
Match_columns 508
No_of_seqs 267 out of 1853
Neff 7.7
Searched_HMMs 13730
Date Mon Mar 25 08:39:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010524.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010524hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74e1 f.23.24.1 (E:1-32) Pet 38.3 30 0.0022 19.4 4.3 18 476-493 8-25 (32)
2 d1rh5c_ f.23.29.1 (C:) Sec-bet 7.6 1.8E+02 0.013 16.0 2.8 23 91-113 8-30 (32)
3 d1wwia1 a.22.1.4 (A:1-148) Hyp 5.1 2.8E+02 0.02 21.7 3.8 34 69-103 85-118 (148)
4 d2a65a1 f.54.1.1 (A:5-513) Na( 4.4 9.2E+02 0.067 21.8 8.3 54 332-389 237-290 (509)
5 d1r4va_ a.22.1.4 (A:) Hypothet 4.3 2.9E+02 0.021 21.7 3.4 34 69-103 89-122 (151)
6 d2a2ma1 a.132.1.3 (A:10-240) H 3.7 3.3E+02 0.024 22.5 3.6 43 30-72 19-66 (231)
7 d2axth1 f.23.33.1 (H:2-65) Pho 3.5 3.9E+02 0.028 17.6 2.9 18 407-424 25-42 (64)
8 d1q90g_ f.23.26.1 (G:) PetG su 3.5 4.1E+02 0.03 14.6 3.6 23 411-433 6-29 (30)
9 d1u5ta1 a.4.5.54 (A:20-164) Va 3.3 2.9E+02 0.021 21.5 2.5 21 357-377 24-44 (145)
10 d1y9ia_ a.195.1.1 (A:) Low tem 3.0 2.7E+02 0.019 22.2 1.9 25 79-103 122-149 (159)
No 1
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=38.34 E-value=30 Score=19.39 Aligned_cols=18 Identities=28% Similarity=0.595 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 010524 476 GVLFASVEIGLLVAVIFL 493 (508)
Q Consensus 476 ~~~~~~v~~Gi~~gv~~s 493 (508)
-.+|..+..|+.+|+.++
T Consensus 8 yivfialffgiavgiifa 25 (32)
T d2e74e1 8 YIVFIALFFGIAVGIIFA 25 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhheee
Confidence 344555556666666554
No 2
>d1rh5c_ f.23.29.1 (C:) Sec-beta subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=7.61 E-value=1.8e+02 Score=16.03 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=18.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 010524 91 FRNDLMAGLTLASLCIPQSIGYA 113 (508)
Q Consensus 91 l~~DiiaGltv~~~~iPq~iaya 113 (508)
.+.|-+-|+|++++.|-.-+.|.
T Consensus 8 vkpehvigvtvafviieailtyg 30 (32)
T d1rh5c_ 8 VKPEHVIGVTVAFVIIEAILTYG 30 (32)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHT
T ss_pred eccceEEEEEEehhhHHHHHhhc
Confidence 56778889999998887777764
No 3
>d1wwia1 a.22.1.4 (A:1-148) Hypothetical protein TTHA1479 {Thermus thermophilus [TaxId: 274]}
Probab=5.10 E-value=2.8e+02 Score=21.73 Aligned_cols=34 Identities=24% Similarity=0.234 Sum_probs=23.1
Q ss_pred HHHHHhhhcccccccccCChhhhHHHHHHHHHHHH
Q 010524 69 VFTFLHGLFPILHWCRNYKASKFRNDLMAGLTLAS 103 (508)
Q Consensus 69 ~~~~l~~~~pi~~wl~~y~~~~l~~DiiaGltv~~ 103 (508)
+.+++..+-| ++--..+..++...|+.+|+++++
T Consensus 85 il~~la~~PP-ld~~~~~e~~~~LP~I~GgL~v~l 118 (148)
T d1wwia1 85 VLDALAALPP-LDLEVAEDVRNLLPELAGALVVAY 118 (148)
T ss_dssp HHHHHHTSCC-CSSEECHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-CCCchhHHHHHHHHHHHhHHHHHH
Confidence 5556555544 443444456678899999999987
No 4
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=4.37 E-value=9.2e+02 Score=21.82 Aligned_cols=54 Identities=9% Similarity=-0.129 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcCCCChHHHHHhHHHHHHhhhcc
Q 010524 332 GQHVGEVAKIGFVAAIVALAEAIAVGRSFASIKGYRLDGNKEMVAMGFMNIVGSFTSC 389 (508)
Q Consensus 332 ~~~~~~~~~~~~~~~iv~~~e~i~~~~~~a~~~~~~id~nqEL~a~G~~Ni~~s~fg~ 389 (508)
.+.+.++... ++.++--..+..-+++...+++-|.-|+-....+.|...++..+
T Consensus 237 ~~vW~~A~~Q----~ffSlgiG~G~~i~~~Sy~~~~~n~~rda~~v~~~~~~~si~~~ 290 (509)
T d2a65a1 237 PGVWIAAVGQ----IFFTLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILG 290 (509)
T ss_dssp HHHHHHHHHH----HHHHHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTH
T ss_pred hHHHHHHHHH----HhhhhcccCCceeeehhhccchhhhcccceEEEecccceeeccc
Confidence 3445554443 33333333334445666777777888998888888877665543
No 5
>d1r4va_ a.22.1.4 (A:) Hypothetical protein Aq_328 {Aquifex aeolicus [TaxId: 63363]}
Probab=4.34 E-value=2.9e+02 Score=21.71 Aligned_cols=34 Identities=15% Similarity=0.233 Sum_probs=22.8
Q ss_pred HHHHHhhhcccccccccCChhhhHHHHHHHHHHHH
Q 010524 69 VFTFLHGLFPILHWCRNYKASKFRNDLMAGLTLAS 103 (508)
Q Consensus 69 ~~~~l~~~~pi~~wl~~y~~~~l~~DiiaGltv~~ 103 (508)
+++++..+-| ++--..+..++-..|+.+|+++++
T Consensus 89 il~~la~~PP-ld~~~~ee~~~~lp~I~GgL~v~l 122 (151)
T d1r4va_ 89 LLEYIAFIPP-VEMNVGEDLKSEYRNIMGGLLLMH 122 (151)
T ss_dssp HHHHHTCCCS-CSSEECHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHhCCC-CCCchHHHHHHHhHHHHhHHHHHH
Confidence 5556655544 443333456678899999999987
No 6
>d2a2ma1 a.132.1.3 (A:10-240) Hypothetical protein BT3146 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=3.75 E-value=3.3e+02 Score=22.48 Aligned_cols=43 Identities=12% Similarity=-0.005 Sum_probs=25.5
Q ss_pred ccccCCCCCChHHHHHHHhhhhc-----ccchhhhhccCCchhhHHHH
Q 010524 30 WVLNAPKPPGFWQELVNSVRETF-----FPHRRKFKNEHDGFNLVFTF 72 (508)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 72 (508)
.+.+.|+..++.++++++.++.. .||.++..+-+-++..++.|
T Consensus 19 ~~~~~~~~~~~~~~L~~~~~~i~~~~~~h~Fv~~l~~GtL~~e~F~~Y 66 (231)
T d2a2ma1 19 LKSDVPAADSLFWKLWNGSLDTAVQVLQTDYFKGIAAGTLDPNAYGSL 66 (231)
T ss_dssp CCCSCCCTTSHHHHHHHHTHHHHHHHHTSHHHHHHHHTCCCHHHHHHH
T ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHCCHHHHHHHcCCCCHHHHHHH
Confidence 44556778888888887655543 67766655544443324433
No 7
>d2axth1 f.23.33.1 (H:2-65) Photosystem II reaction center protein H, PsbH {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=3.45 E-value=3.9e+02 Score=17.58 Aligned_cols=18 Identities=11% Similarity=0.274 Sum_probs=11.4
Q ss_pred CcchHHHHHHHHHHHHHH
Q 010524 407 CESTVSNIVMAITVLISL 424 (508)
Q Consensus 407 ~~T~ls~iv~a~~~ll~l 424 (508)
+.|++.+++++++..+.+
T Consensus 25 GTTplMgv~m~Lf~vfl~ 42 (64)
T d2axth1 25 GTTPLMAVFMGLFLVFLL 42 (64)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHH
Confidence 467777777766555443
No 8
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.45 E-value=4.1e+02 Score=14.57 Aligned_cols=23 Identities=35% Similarity=0.506 Sum_probs=10.3
Q ss_pred HHHHHHHHH-HHHHHHHhhHHHhh
Q 010524 411 VSNIVMAIT-VLISLEFFTRLLYY 433 (508)
Q Consensus 411 ls~iv~a~~-~ll~ll~l~pl~~~ 433 (508)
++|++.|++ +-+..+|.+.++.|
T Consensus 6 l~GivlGlipiTl~Glfv~AylQY 29 (30)
T d1q90g_ 6 LCGIVLGLVPVTIAGLFVTAYLQY 29 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhHHHhhHHHHHHHHHHHHHHHh
Confidence 455555543 22333444444444
No 9
>d1u5ta1 a.4.5.54 (A:20-164) Vacuolar sorting protein SNF8 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=3.28 E-value=2.9e+02 Score=21.55 Aligned_cols=21 Identities=19% Similarity=0.150 Sum_probs=18.3
Q ss_pred HHHHhhhcCCcCCCChHHHHH
Q 010524 357 GRSFASIKGYRLDGNKEMVAM 377 (508)
Q Consensus 357 ~~~~a~~~~~~id~nqEL~a~ 377 (508)
-..||.+|+.+++.|.|+++.
T Consensus 24 L~~FA~kH~~eI~~np~FR~~ 44 (145)
T d1u5ta1 24 LVEFAKKHNSELQASPEFRSK 44 (145)
T ss_dssp HHHHHHHCTTTTTTCHHHHHH
T ss_pred HHHHHHHhHHHhhcCHHHHHH
Confidence 456899999999999999876
No 10
>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC {Listeria monocytogenes [TaxId: 1639]}
Probab=3.00 E-value=2.7e+02 Score=22.16 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=17.7
Q ss_pred cccccc-cCC--hhhhHHHHHHHHHHHH
Q 010524 79 ILHWCR-NYK--ASKFRNDLMAGLTLAS 103 (508)
Q Consensus 79 i~~wl~-~y~--~~~l~~DiiaGltv~~ 103 (508)
+..|+. +.+ +..+..|++||+..+.
T Consensus 122 ~i~~ld~~~~g~~gv~lDDivagi~Aa~ 149 (159)
T d1y9ia_ 122 ILAKLNEHDGIAVHTFLDDIVGAIAAAA 149 (159)
T ss_dssp HHHHTTCCCSSCCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCccchHHHHHHHHHHHH
Confidence 355663 343 3469999999998876
Done!