Query 010525
Match_columns 508
No_of_seqs 327 out of 1419
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 01:33:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010525.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010525hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 3.6E-61 7.9E-66 506.0 39.6 374 22-431 20-430 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 1.5E-52 3.2E-57 438.0 32.2 331 77-430 44-397 (398)
3 cd05489 xylanase_inhibitor_I_l 100.0 1.1E-50 2.5E-55 417.5 30.8 306 93-427 10-361 (362)
4 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.5E-50 3.3E-55 412.5 28.7 298 80-430 4-326 (326)
5 cd05472 cnd41_like Chloroplast 100.0 5.6E-50 1.2E-54 403.6 30.2 286 80-429 2-299 (299)
6 cd05490 Cathepsin_D2 Cathepsin 100.0 3.1E-49 6.7E-54 402.9 27.4 297 79-426 6-325 (325)
7 cd05486 Cathespin_E Cathepsin 100.0 3.1E-49 6.6E-54 401.3 26.4 290 81-426 2-316 (316)
8 cd05478 pepsin_A Pepsin A, asp 100.0 4.4E-49 9.6E-54 400.3 27.0 291 79-426 10-317 (317)
9 cd05477 gastricsin Gastricsins 100.0 2.5E-48 5.3E-53 395.1 28.4 289 80-427 4-318 (318)
10 cd05485 Cathepsin_D_like Cathe 100.0 3.6E-48 7.9E-53 395.4 26.7 297 79-426 11-329 (329)
11 cd06098 phytepsin Phytepsin, a 100.0 7.1E-48 1.5E-52 391.4 28.1 281 79-426 10-317 (317)
12 PTZ00165 aspartyl protease; Pr 100.0 9.4E-48 2E-52 406.7 30.1 297 79-432 120-451 (482)
13 cd05473 beta_secretase_like Be 100.0 1.5E-47 3.3E-52 396.2 30.3 320 80-443 4-361 (364)
14 cd05488 Proteinase_A_fungi Fun 100.0 8.2E-48 1.8E-52 391.5 25.5 288 80-426 11-320 (320)
15 cd05487 renin_like Renin stimu 100.0 3.1E-47 6.7E-52 388.3 27.7 296 79-427 8-326 (326)
16 cd05475 nucellin_like Nucellin 100.0 1.1E-46 2.3E-51 374.9 29.0 259 80-429 3-273 (273)
17 PTZ00147 plasmepsin-1; Provisi 100.0 1.7E-45 3.8E-50 386.7 27.1 290 80-428 140-450 (453)
18 PTZ00013 plasmepsin 4 (PM4); P 100.0 5.4E-45 1.2E-49 382.2 28.1 290 80-428 139-449 (450)
19 cd05476 pepsin_A_like_plant Ch 100.0 5.9E-45 1.3E-49 360.8 26.4 246 80-429 2-265 (265)
20 cd06097 Aspergillopepsin_like 100.0 9.2E-45 2E-49 361.9 25.4 261 82-426 3-278 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 8.4E-42 1.8E-46 343.2 25.5 265 81-427 4-295 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 3.7E-43 8E-48 356.0 14.9 294 81-427 3-317 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 3.7E-41 8.1E-46 335.5 26.6 263 82-426 3-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 99.9 2.1E-27 4.6E-32 218.0 10.6 155 82-263 3-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 1.4E-24 3.1E-29 198.8 11.9 142 283-426 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.8 1.3E-19 2.9E-24 154.6 11.1 106 83-226 2-109 (109)
27 cd05483 retropepsin_like_bacte 96.2 0.01 2.2E-07 48.4 5.5 84 89-228 10-94 (96)
28 cd05479 RP_DDI RP_DDI; retrope 94.9 0.22 4.8E-06 43.3 9.5 27 398-424 98-124 (124)
29 TIGR02281 clan_AA_DTGA clan AA 94.8 0.43 9.3E-06 41.3 10.9 36 281-324 9-44 (121)
30 PF08284 RVP_2: Retroviral asp 91.3 0.29 6.2E-06 43.3 4.4 28 400-427 105-132 (135)
31 TIGR03698 clan_AA_DTGF clan AA 87.8 2.6 5.6E-05 35.6 7.4 24 399-422 84-107 (107)
32 PF13650 Asp_protease_2: Aspar 87.5 2.9 6.4E-05 33.1 7.4 21 89-109 6-26 (90)
33 PF13650 Asp_protease_2: Aspar 83.2 1.5 3.3E-05 34.8 3.7 29 291-324 3-31 (90)
34 PF12384 Peptidase_A2B: Ty3 tr 80.1 8.9 0.00019 34.8 7.5 22 303-324 46-67 (177)
35 PF13975 gag-asp_proteas: gag- 79.8 2.8 6E-05 32.5 3.9 30 290-324 12-41 (72)
36 cd05484 retropepsin_like_LTR_2 78.9 2.9 6.2E-05 33.9 3.9 30 290-324 4-33 (91)
37 cd05479 RP_DDI RP_DDI; retrope 74.9 12 0.00026 32.3 6.9 25 89-113 24-49 (124)
38 cd05483 retropepsin_like_bacte 74.8 4.9 0.00011 32.2 4.3 30 290-324 6-35 (96)
39 cd06094 RP_Saci_like RP_Saci_l 68.2 11 0.00024 30.7 4.7 21 301-321 8-28 (89)
40 cd06095 RP_RTVL_H_like Retrope 66.9 6.8 0.00015 31.4 3.4 29 291-324 3-31 (86)
41 TIGR02281 clan_AA_DTGA clan AA 65.3 18 0.00039 31.1 5.9 21 89-109 19-39 (121)
42 PF00077 RVP: Retroviral aspar 59.7 7.4 0.00016 31.8 2.4 26 290-320 9-34 (100)
43 KOG0012 DNA damage inducible p 56.8 69 0.0015 32.8 8.9 39 391-429 310-348 (380)
44 cd05481 retropepsin_like_LTR_1 53.5 15 0.00032 30.1 3.2 31 291-325 3-33 (93)
45 cd05484 retropepsin_like_LTR_2 52.5 9.3 0.0002 30.8 1.8 21 89-109 8-28 (91)
46 PF02160 Peptidase_A3: Caulifl 52.0 13 0.00028 35.1 2.8 28 399-427 91-118 (201)
47 COG3577 Predicted aspartyl pro 50.0 30 0.00065 32.7 4.8 36 281-324 103-138 (215)
48 cd05480 NRIP_C NRIP_C; putativ 49.0 1.2E+02 0.0026 25.3 7.7 29 391-419 75-103 (103)
49 COG5550 Predicted aspartyl pro 45.8 14 0.00031 31.8 1.9 20 305-324 29-49 (125)
50 PF09668 Asp_protease: Asparty 44.8 24 0.00053 30.6 3.2 30 290-324 28-57 (124)
51 cd05470 pepsin_retropepsin_lik 36.9 27 0.00059 28.7 2.4 27 291-320 3-29 (109)
52 PF00077 RVP: Retroviral aspar 36.1 29 0.00062 28.2 2.3 21 89-109 13-33 (100)
53 cd05482 HIV_retropepsin_like R 30.3 35 0.00075 27.7 1.8 20 89-108 6-25 (87)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=3.6e-61 Score=505.97 Aligned_cols=374 Identities=23% Similarity=0.413 Sum_probs=291.9
Q ss_pred cccccceeeEEecCChhhhhhcccCCCCCCCCCCCCcHHHHHHHHhccccc-cccc--------c--------CCCceee
Q 010525 22 AETVMFSTKLIHRFSEEVKALGVSKNRNATSWPAKKSFEYYQVLLSSDVQK-QKMK--------T--------GPQFQML 84 (508)
Q Consensus 22 ~~~~~f~~~~~hr~s~~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~d~~~-~~~~--------~--------~~~~~~l 84 (508)
....+|+++|+||++++++.+... .. ..+..+..+++|.+| +.+. + +.+...|
T Consensus 20 ~~~~~~~~~l~h~~~~~sp~~~~~---------~~-~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Y~v~i 89 (431)
T PLN03146 20 APKGGFTVDLIHRDSPKSPFYNPS---------ET-PSQRLRNAFRRSISRVNHFRPTDASPNDPQSDLISNGGEYLMNI 89 (431)
T ss_pred ccCCceEEEEEeCCCCCCCCCCCC---------CC-hhHHHHHHHHHHHHHHHHHhhccccCCccccCcccCCccEEEEE
Confidence 366789999999999877654311 11 122233334444322 2211 0 1345677
Q ss_pred eecCCCceeEeccccCCceeEEecc-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCC---CCCCCCC
Q 010525 85 FPSQGSKTMSLGNDFGCDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGT---SCQNPKQ 160 (508)
Q Consensus 85 ~~~~g~q~~~l~~DTGS~~~WV~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~---~C~~~~~ 160 (508)
.+|+|+|++.+++||||+++||+|. |..|.++. ++.|||++|+||+.++|+++.|.... .|... +
T Consensus 90 ~iGTPpq~~~vi~DTGS~l~Wv~C~~C~~C~~~~----------~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~-~ 158 (431)
T PLN03146 90 SIGTPPVPILAIADTGSDLIWTQCKPCDDCYKQV----------SPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDE-N 158 (431)
T ss_pred EcCCCCceEEEEECCCCCcceEcCCCCcccccCC----------CCcccCCCCCCCcccCCCCcccccCCCCCCCCCC-C
Confidence 8899999999999999999999998 99998764 47999999999999999999998632 36543 4
Q ss_pred CCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCCCCCCCCeEEecCCCCCChHHHHHhc
Q 010525 161 PCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLLAKA 240 (508)
Q Consensus 161 ~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~~~~~~dGIlGLg~~~~S~~~qL~~~ 240 (508)
.|.|.+.|+|| +.+.|.+++|+|+|++..... ...+++.|||++.+.|.|.. ..+||||||++.+|+++||...
T Consensus 159 ~c~y~i~Ygdg-s~~~G~l~~Dtltlg~~~~~~---~~v~~~~FGc~~~~~g~f~~--~~~GilGLG~~~~Sl~sql~~~ 232 (431)
T PLN03146 159 TCTYSYSYGDG-SFTKGNLAVETLTIGSTSGRP---VSFPGIVFGCGHNNGGTFDE--KGSGIVGLGGGPLSLISQLGSS 232 (431)
T ss_pred CCeeEEEeCCC-CceeeEEEEEEEEeccCCCCc---ceeCCEEEeCCCCCCCCccC--CCceeEecCCCCccHHHHhhHh
Confidence 59999999995 778999999999998753211 23578999999998886632 4589999999999999999753
Q ss_pred CCccceeEEeeec-----CCCccEEeccCCC---CCceEeeeEEcCCCceeEEEEeeeEEECCeeeccCc--------cc
Q 010525 241 GLIRNSFSMCFDK-----DDSGRIFFGDQGP---ATQQSTSFLASNGKYITYIIGVETCCIGSSCLKQTS--------FK 304 (508)
Q Consensus 241 gli~~~FSl~l~~-----~~~G~i~fG~~d~---~~~~~tp~v~~~~~~~~y~V~l~~i~Vg~~~~~~~~--------~~ 304 (508)
+.++|||||.+ ...|.|+||+... ....|||++..+. ..+|.|+|++|+||++.+.... ..
T Consensus 233 --~~~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~-~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~ 309 (431)
T PLN03146 233 --IGGKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDP-DTFYYLTLEAISVGSKKLPYTGSSKNGVEEGN 309 (431)
T ss_pred --hCCcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCC-CCeEEEeEEEEEECCEECcCCccccccCCCCc
Confidence 56699999964 1369999998542 2256899975433 4789999999999999876321 36
Q ss_pred eEEccCccceeccHHHHHHHHHHHHHhccCccccccccccccccccccCCCCCCCeEEEEecCCCeEEEcCCeEEEEeec
Q 010525 305 AIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQ 384 (508)
Q Consensus 305 aiiDSGTs~t~LP~~~~~~l~~~i~~~v~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~i~~~~~~~~~~~ 384 (508)
+||||||++++||+++|++|.++|.+++...+.......++.||+.... ..+|+|+|+|. |..+.+++.+|++....
T Consensus 310 ~iiDSGTt~t~Lp~~~y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~--~~~P~i~~~F~-Ga~~~l~~~~~~~~~~~ 386 (431)
T PLN03146 310 IIIDSGTTLTLLPSDFYSELESAVEEAIGGERVSDPQGLLSLCYSSTSD--IKLPIITAHFT-GADVKLQPLNTFVKVSE 386 (431)
T ss_pred EEEeCCccceecCHHHHHHHHHHHHHHhccccCCCCCCCCCccccCCCC--CCCCeEEEEEC-CCeeecCcceeEEEcCC
Confidence 9999999999999999999999999988754433333457789985322 47899999995 78999999999887543
Q ss_pred cccEEEEEEEecCCCceEEcceeeeeEEEEEeCCCCEEEEeeCCCCC
Q 010525 385 VVTGFCLAIQPVDGDIGTIGQNFMTGYRVVFDRENLKLGWSHSNCQD 431 (508)
Q Consensus 385 ~~~~~Cl~i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C~~ 431 (508)
+.+|+++.... +.||||+.|||++|||||++++||||++.+|..
T Consensus 387 --~~~Cl~~~~~~-~~~IlG~~~q~~~~vvyDl~~~~igFa~~~C~~ 430 (431)
T PLN03146 387 --DLVCFAMIPTS-SIAIFGNLAQMNFLVGYDLESKTVSFKPTDCTK 430 (431)
T ss_pred --CcEEEEEecCC-CceEECeeeEeeEEEEEECCCCEEeeecCCcCc
Confidence 57899988764 469999999999999999999999999999975
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-52 Score=437.98 Aligned_cols=331 Identities=28% Similarity=0.505 Sum_probs=273.9
Q ss_pred cCCCceeeeecCCCceeEeccccCCceeEEecc-CC-CCCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCC
Q 010525 77 TGPQFQMLFPSQGSKTMSLGNDFGCDLLWIPCD-CV-RCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTS 154 (508)
Q Consensus 77 ~~~~~~~l~~~~g~q~~~l~~DTGS~~~WV~c~-C~-~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~ 154 (508)
.+.+...|.+|+|+|.|.|++||||+++||+|. |. .|..+. .+.|||++||||+.+.|+++.|.....
T Consensus 44 ~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~~C~~~~----------~~~f~p~~SSt~~~~~c~~~~c~~~~~ 113 (398)
T KOG1339|consen 44 SGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSSACYSQH----------NPIFDPSASSTYKSVGCSSPRCKSLPQ 113 (398)
T ss_pred ccccEEEEecCCCCeeeEEEEeCCCCceeeccccccccccccC----------CCccCccccccccccCCCCcccccccc
Confidence 345788899999999999999999999999998 98 798643 145999999999999999999999777
Q ss_pred CCCCCCCCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCCCC-CCCCeEEecCCCCCCh
Q 010525 155 CQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDG-VAPDGLIGLGLGEISV 233 (508)
Q Consensus 155 C~~~~~~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~~~-~~~dGIlGLg~~~~S~ 233 (508)
|..+++.|+|.|+|+|+ ++++|.+++|+|+|++.+. ...++++|||+..+.|. +.. .+.|||||||++++|+
T Consensus 114 ~~~~~~~C~y~i~Ygd~-~~~~G~l~~Dtv~~~~~~~-----~~~~~~~FGc~~~~~g~-~~~~~~~dGIlGLg~~~~S~ 186 (398)
T KOG1339|consen 114 SCSPNSSCPYSIQYGDG-SSTSGYLATDTVTFGGTTS-----LPVPNQTFGCGTNNPGS-FGLFAAFDGILGLGRGSLSV 186 (398)
T ss_pred CcccCCcCceEEEeCCC-CceeEEEEEEEEEEccccc-----cccccEEEEeeecCccc-cccccccceEeecCCCCccc
Confidence 66667789999999994 6899999999999998531 24467999999999886 333 5679999999999999
Q ss_pred HHHHHhcCCccceeEEeeecC-----CCccEEeccCCCCCc----eEeeeEEcCCCceeEEEEeeeEEECCee------e
Q 010525 234 PSLLAKAGLIRNSFSMCFDKD-----DSGRIFFGDQGPATQ----QSTSFLASNGKYITYIIGVETCCIGSSC------L 298 (508)
Q Consensus 234 ~~qL~~~gli~~~FSl~l~~~-----~~G~i~fG~~d~~~~----~~tp~v~~~~~~~~y~V~l~~i~Vg~~~------~ 298 (508)
+.|+...+...++||+||.++ ..|.|+||+.|.... .|||++.... .+|.|++++|.||++. .
T Consensus 187 ~~q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~--~~y~v~l~~I~vgg~~~~~~~~~ 264 (398)
T KOG1339|consen 187 PSQLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPS--TYYQVNLDGISVGGKRPIGSSLF 264 (398)
T ss_pred eeecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCC--ccEEEEEeEEEECCccCCCcceE
Confidence 999988766667999999876 369999999998753 4899976543 5999999999999854 2
Q ss_pred ccCccceEEccCccceeccHHHHHHHHHHHHHhccCccccccccccccccccccCCCCCCCeEEEEecCCCeEEEcCCeE
Q 010525 299 KQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVF 378 (508)
Q Consensus 299 ~~~~~~aiiDSGTs~t~LP~~~~~~l~~~i~~~v~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~i~~~~~ 378 (508)
.....++|+||||++++||+++|++|.++|..++.. ......++..||...... ..+|.|+|+|.+|+.|.+++++|
T Consensus 265 ~~~~~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~~--~~~~~~~~~~C~~~~~~~-~~~P~i~~~f~~g~~~~l~~~~y 341 (398)
T KOG1339|consen 265 CTDGGGAIIDSGTSLTYLPTSAYNALREAIGAEVSV--VGTDGEYFVPCFSISTSG-VKLPDITFHFGGGAVFSLPPKNY 341 (398)
T ss_pred ecCCCCEEEECCcceeeccHHHHHHHHHHHHhheec--cccCCceeeecccCCCCc-ccCCcEEEEECCCcEEEeCccce
Confidence 222478999999999999999999999999876511 112224567899876433 45999999997689999999999
Q ss_pred EEEeeccccEEEEEEEecCC--CceEEcceeeeeEEEEEeCC-CCEEEEee--CCCC
Q 010525 379 VIYGTQVVTGFCLAIQPVDG--DIGTIGQNFMTGYRVVFDRE-NLKLGWSH--SNCQ 430 (508)
Q Consensus 379 ~~~~~~~~~~~Cl~i~~~~~--~~~IlG~~fl~~~yvVFD~e-~~rIGfa~--~~C~ 430 (508)
++...++... |+++..... ..||||+.||++++++||+. ++||||++ .+|.
T Consensus 342 ~~~~~~~~~~-Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 342 LVEVSDGGGV-CLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred EEEECCCCCc-eeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 9987653222 998766543 37999999999999999999 99999999 7775
No 3
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=1.1e-50 Score=417.50 Aligned_cols=306 Identities=23% Similarity=0.336 Sum_probs=241.8
Q ss_pred eEeccccCCceeEEeccCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCC--------------CCCCC
Q 010525 93 MSLGNDFGCDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGT--------------SCQNP 158 (508)
Q Consensus 93 ~~l~~DTGS~~~WV~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~--------------~C~~~ 158 (508)
+.+++||||+++||||. |.+|+||+.++|+++.|.... .|.+
T Consensus 10 ~~~~~DTGS~l~WvqC~-----------------------~~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~- 65 (362)
T cd05489 10 VPLVLDLAGPLLWSTCD-----------------------AGHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGN- 65 (362)
T ss_pred eeEEEECCCCceeeeCC-----------------------CCCcCCCCccCcCChhhccccccCCCccccCCCCCCCCC-
Confidence 78889999999999984 346889999999999997521 3433
Q ss_pred CCCCCeeee-cCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCCCCCCCCeEEecCCCCCChHHHH
Q 010525 159 KQPCPYTMD-YYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLL 237 (508)
Q Consensus 159 ~~~c~y~i~-Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~~~~~~dGIlGLg~~~~S~~~qL 237 (508)
+.|.|... |++| +.++|.+++|+|+|+..++........+++.|||++++....... ..|||||||++++|++.||
T Consensus 66 -~~C~y~~~~y~~g-s~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~-~~dGIlGLg~~~lSl~sql 142 (362)
T cd05489 66 -NTCTAHPYNPVTG-ECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPP-GAQGVAGLGRSPLSLPAQL 142 (362)
T ss_pred -CcCeeEccccccC-cEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCcc-ccccccccCCCccchHHHh
Confidence 35889765 7774 889999999999998643221000145799999998864321111 3699999999999999999
Q ss_pred HhcCCccceeEEeeecC--CCccEEeccCCC----------CCceEeeeEEcCCCceeEEEEeeeEEECCeeecc-----
Q 010525 238 AKAGLIRNSFSMCFDKD--DSGRIFFGDQGP----------ATQQSTSFLASNGKYITYIIGVETCCIGSSCLKQ----- 300 (508)
Q Consensus 238 ~~~gli~~~FSl~l~~~--~~G~i~fG~~d~----------~~~~~tp~v~~~~~~~~y~V~l~~i~Vg~~~~~~----- 300 (508)
..++.++++||+||.++ ..|.|+||+.+. ..+.|||++..+....+|.|+|++|+||++.+..
T Consensus 143 ~~~~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~ 222 (362)
T cd05489 143 ASAFGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLS 222 (362)
T ss_pred hhhcCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhc
Confidence 88765689999999864 479999999885 3468999987654457999999999999998762
Q ss_pred -----CccceEEccCccceeccHHHHHHHHHHHHHhccCcccccc-cccccccccccc----CCCCCCCeEEEEecC-CC
Q 010525 301 -----TSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFE-GYPWKCCYKSSS----QRLPKLPSVKLMFPQ-NN 369 (508)
Q Consensus 301 -----~~~~aiiDSGTs~t~LP~~~~~~l~~~i~~~v~~~~~~~~-~~~~~~C~~~~~----~~~~~~P~i~f~f~g-~~ 369 (508)
....+||||||++|+||+++|++|.++|.+++........ ....+.||+... .....+|+|+|+|.| |+
T Consensus 223 ~~~~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~ 302 (362)
T cd05489 223 ANDRLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGV 302 (362)
T ss_pred cccccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCe
Confidence 1246999999999999999999999999988764332211 122378998543 224689999999987 79
Q ss_pred eEEEcCCeEEEEeeccccEEEEEEEecC---CCceEEcceeeeeEEEEEeCCCCEEEEeeC
Q 010525 370 SFVVNNPVFVIYGTQVVTGFCLAIQPVD---GDIGTIGQNFMTGYRVVFDRENLKLGWSHS 427 (508)
Q Consensus 370 ~~~i~~~~~~~~~~~~~~~~Cl~i~~~~---~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~ 427 (508)
.|.+++++|+++..+ +..|++|+..+ .+.||||+.|||++|+|||++++|||||++
T Consensus 303 ~~~l~~~ny~~~~~~--~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 303 NWTIFGANSMVQVKG--GVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EEEEcCCceEEEcCC--CcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 999999999987653 57899998765 357999999999999999999999999975
No 4
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.5e-50 Score=412.48 Aligned_cols=298 Identities=23% Similarity=0.405 Sum_probs=241.7
Q ss_pred CceeeeecCCCceeEeccccCCceeEEecc-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCC
Q 010525 80 QFQMLFPSQGSKTMSLGNDFGCDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNP 158 (508)
Q Consensus 80 ~~~~l~~~~g~q~~~l~~DTGS~~~WV~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~~ 158 (508)
+...|..|+|+|++.|++||||+++||+|. |..|..+. ++.|+|++|+|++.++|++..|.....|.+
T Consensus 4 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~~c~~~~----------~~~y~~~~Sst~~~~~C~~~~c~~~~~~~~- 72 (326)
T cd06096 4 YFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCKNCGIHM----------EPPYNLNNSITSSILYCDCNKCCYCLSCLN- 72 (326)
T ss_pred EEEEEEecCCCeEEEEEEeCCCCceEEecCCCCCcCCCC----------CCCcCcccccccccccCCCccccccCcCCC-
Confidence 455788899999999999999999999998 99998653 379999999999999999999976555644
Q ss_pred CCCCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCCCCCCCCeEEecCCCCCC----hH
Q 010525 159 KQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS----VP 234 (508)
Q Consensus 159 ~~~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~~~~~~dGIlGLg~~~~S----~~ 234 (508)
+.|.|.+.|++| +.+.|.+++|+|+|++..... ......++.|||+..+++.|... ..+||||||+...+ ..
T Consensus 73 -~~~~~~i~Y~~g-s~~~G~~~~D~v~lg~~~~~~-~~~~~~~~~fg~~~~~~~~~~~~-~~~GilGLg~~~~~~~~~~~ 148 (326)
T cd06096 73 -NKCEYSISYSEG-SSISGFYFSDFVSFESYLNSN-SEKESFKKIFGCHTHETNLFLTQ-QATGILGLSLTKNNGLPTPI 148 (326)
T ss_pred -CcCcEEEEECCC-CceeeEEEEEEEEeccCCCCc-cccccccEEeccCccccCccccc-ccceEEEccCCcccccCchh
Confidence 469999999985 778999999999998763210 00112368899999988776544 46999999998642 22
Q ss_pred HHHHhcCCc-c--ceeEEeeecCCCccEEeccCCCCC--------------ceEeeeEEcCCCceeEEEEeeeEEECCee
Q 010525 235 SLLAKAGLI-R--NSFSMCFDKDDSGRIFFGDQGPAT--------------QQSTSFLASNGKYITYIIGVETCCIGSSC 297 (508)
Q Consensus 235 ~qL~~~gli-~--~~FSl~l~~~~~G~i~fG~~d~~~--------------~~~tp~v~~~~~~~~y~V~l~~i~Vg~~~ 297 (508)
.+|.+++.+ . ++||+||+++ .|.|+||++|+.+ +.|+|++. ..+|.|++++|.||++.
T Consensus 149 ~~l~~~~~~~~~~~~FS~~l~~~-~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~----~~~y~v~l~~i~vg~~~ 223 (326)
T cd06096 149 ILLFTKRPKLKKDKIFSICLSED-GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITR----KYYYYVKLEGLSVYGTT 223 (326)
T ss_pred HHHHHhcccccCCceEEEEEcCC-CeEEEECccChhhhcccccccccccCCceEEeccC----CceEEEEEEEEEEcccc
Confidence 345555555 3 8999999975 6999999998743 35777643 37899999999999985
Q ss_pred ---eccCccceEEccCccceeccHHHHHHHHHHHHHhccCccccccccccccccccccCCCCCCCeEEEEecCCCeEEEc
Q 010525 298 ---LKQTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVN 374 (508)
Q Consensus 298 ---~~~~~~~aiiDSGTs~t~LP~~~~~~l~~~i~~~v~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~i~ 374 (508)
.......+||||||++++||+++|++|.+++ |+|+|+|.+|..++++
T Consensus 224 ~~~~~~~~~~aivDSGTs~~~lp~~~~~~l~~~~------------------------------P~i~~~f~~g~~~~i~ 273 (326)
T cd06096 224 SNSGNTKGLGMLVDSGSTLSHFPEDLYNKINNFF------------------------------PTITIIFENNLKIDWK 273 (326)
T ss_pred cceecccCCCEEEeCCCCcccCCHHHHHHHHhhc------------------------------CcEEEEEcCCcEEEEC
Confidence 2235678999999999999999999988764 8899999768899999
Q ss_pred CCeEEEEeeccccEEEEEEEecCCCceEEcceeeeeEEEEEeCCCCEEEEeeCCCC
Q 010525 375 NPVFVIYGTQVVTGFCLAIQPVDGDIGTIGQNFMTGYRVVFDRENLKLGWSHSNCQ 430 (508)
Q Consensus 375 ~~~~~~~~~~~~~~~Cl~i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C~ 430 (508)
+++|++.... ..||+++...+ +.+|||++|||++|+|||+|++|||||+++|.
T Consensus 274 p~~y~~~~~~--~~c~~~~~~~~-~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 274 PSSYLYKKES--FWCKGGEKSVS-NKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred HHHhccccCC--ceEEEEEecCC-CceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 9999887543 45777766544 68999999999999999999999999999993
No 5
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=5.6e-50 Score=403.65 Aligned_cols=286 Identities=26% Similarity=0.444 Sum_probs=235.6
Q ss_pred CceeeeecCCCceeEeccccCCceeEEeccCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCCC
Q 010525 80 QFQMLFPSQGSKTMSLGNDFGCDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPK 159 (508)
Q Consensus 80 ~~~~l~~~~g~q~~~l~~DTGS~~~WV~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~~~ 159 (508)
+...|..++|+|++.|++||||+++||+|. .|
T Consensus 2 Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~--~c---------------------------------------------- 33 (299)
T cd05472 2 YVVTVGLGTPARDQTVIVDTGSDLTWVQCQ--PC---------------------------------------------- 33 (299)
T ss_pred eEEEEecCCCCcceEEEecCCCCcccccCC--CC----------------------------------------------
Confidence 345678899999999999999999999874 11
Q ss_pred CCCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCCCCCCCCeEEecCCCCCChHHHHHh
Q 010525 160 QPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLLAK 239 (508)
Q Consensus 160 ~~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~~~~~~dGIlGLg~~~~S~~~qL~~ 239 (508)
|.|.++|++| +.++|.+++|+|+|++.. ..+++.|||+..+++.+. ..+||||||+..+|+++||..
T Consensus 34 --~~~~i~Yg~G-s~~~G~~~~D~v~ig~~~-------~~~~~~Fg~~~~~~~~~~---~~~GilGLg~~~~s~~~ql~~ 100 (299)
T cd05472 34 --CLYQVSYGDG-SYTTGDLATDTLTLGSSD-------VVPGFAFGCGHDNEGLFG---GAAGLLGLGRGKLSLPSQTAS 100 (299)
T ss_pred --CeeeeEeCCC-ceEEEEEEEEEEEeCCCC-------ccCCEEEECCccCCCccC---CCCEEEECCCCcchHHHHhhH
Confidence 6799999985 677999999999998641 346899999998877553 468999999999999999876
Q ss_pred cCCccceeEEeeec---CCCccEEeccCCC--CCceEeeeEEcCCCceeEEEEeeeEEECCeeecc-----CccceEEcc
Q 010525 240 AGLIRNSFSMCFDK---DDSGRIFFGDQGP--ATQQSTSFLASNGKYITYIIGVETCCIGSSCLKQ-----TSFKAIVDS 309 (508)
Q Consensus 240 ~gli~~~FSl~l~~---~~~G~i~fG~~d~--~~~~~tp~v~~~~~~~~y~V~l~~i~Vg~~~~~~-----~~~~aiiDS 309 (508)
+ .+++||+||.+ ...|.|+||++|+ ..+.|+|++..+....+|.|+|++|+||++.+.. ....+||||
T Consensus 101 ~--~~~~FS~~L~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDS 178 (299)
T cd05472 101 S--YGGVFSYCLPDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDS 178 (299)
T ss_pred h--hcCceEEEccCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeC
Confidence 5 47899999986 3479999999998 4578999976554457999999999999998863 234799999
Q ss_pred CccceeccHHHHHHHHHHHHHhccCccccccccccccccccccCCCCCCCeEEEEecCCCeEEEcCCeEEEEeeccccEE
Q 010525 310 GSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVVTGF 389 (508)
Q Consensus 310 GTs~t~LP~~~~~~l~~~i~~~v~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~i~~~~~~~~~~~~~~~~ 389 (508)
||++++||+++|++|.+++.+++...........++.||+.++.....+|+|+|+|.++..+.+++++|++.... .+.+
T Consensus 179 GTt~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~-~~~~ 257 (299)
T cd05472 179 GTVITRLPPSAYAALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDD-SSQV 257 (299)
T ss_pred CCcceecCHHHHHHHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecC-CCCE
Confidence 999999999999999999987764322212223345699877766678999999997688999999999884322 2578
Q ss_pred EEEEEecC--CCceEEcceeeeeEEEEEeCCCCEEEEeeCCC
Q 010525 390 CLAIQPVD--GDIGTIGQNFMTGYRVVFDRENLKLGWSHSNC 429 (508)
Q Consensus 390 Cl~i~~~~--~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C 429 (508)
|+++...+ .+.||||+.|||++|+|||++++|||||+.+|
T Consensus 258 C~~~~~~~~~~~~~ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 258 CLAFAGTSDDGGLSIIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred EEEEeCCCCCCCCEEEchHHccceEEEEECCCCEEeEecCCC
Confidence 99988763 45799999999999999999999999999999
No 6
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=3.1e-49 Score=402.86 Aligned_cols=297 Identities=22% Similarity=0.359 Sum_probs=234.1
Q ss_pred CCceeeeecCCCceeEeccccCCceeEEecc-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCC
Q 010525 79 PQFQMLFPSQGSKTMSLGNDFGCDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQN 157 (508)
Q Consensus 79 ~~~~~l~~~~g~q~~~l~~DTGS~~~WV~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~ 157 (508)
++...|..|+|+|++.|++||||+++||+|. |..|... |..++.|+|++|+||+..
T Consensus 6 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~--------C~~~~~y~~~~SsT~~~~--------------- 62 (325)
T cd05490 6 QYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIA--------CWLHHKYNSSKSSTYVKN--------------- 62 (325)
T ss_pred EEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCcc--------ccCcCcCCcccCcceeeC---------------
Confidence 3566788899999999999999999999997 8643110 113479999999999853
Q ss_pred CCCCCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCCCCCCCCeEEecCCCCCC-----
Q 010525 158 PKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS----- 232 (508)
Q Consensus 158 ~~~~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~~~~~~dGIlGLg~~~~S----- 232 (508)
.|.|.+.|++| ++.|.+++|+|+|++. ...++.|||++++++..+.....|||||||++.++
T Consensus 63 ---~~~~~i~Yg~G--~~~G~~~~D~v~~g~~--------~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~ 129 (325)
T cd05490 63 ---GTEFAIQYGSG--SLSGYLSQDTVSIGGL--------QVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVT 129 (325)
T ss_pred ---CcEEEEEECCc--EEEEEEeeeEEEECCE--------EEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCC
Confidence 28999999997 5899999999999876 34689999999887643333356999999998654
Q ss_pred -hHHHHHhcCCc-cceeEEeeecC----CCccEEeccCCCCCc----eEeeeEEcCCCceeEEEEeeeEEECCeeec-cC
Q 010525 233 -VPSLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPATQ----QSTSFLASNGKYITYIIGVETCCIGSSCLK-QT 301 (508)
Q Consensus 233 -~~~qL~~~gli-~~~FSl~l~~~----~~G~i~fG~~d~~~~----~~tp~v~~~~~~~~y~V~l~~i~Vg~~~~~-~~ 301 (508)
++++|+++|+| +++||+||.++ ..|.|+||++|+.++ .|+|+.. ..+|.|+|++|.||++... ..
T Consensus 130 ~~~~~l~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~----~~~w~v~l~~i~vg~~~~~~~~ 205 (325)
T cd05490 130 PVFDNIMAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTR----KAYWQIHMDQVDVGSGLTLCKG 205 (325)
T ss_pred CHHHHHHhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCc----ceEEEEEeeEEEECCeeeecCC
Confidence 56799999999 89999999864 369999999998653 4666632 4799999999999987543 34
Q ss_pred ccceEEccCccceeccHHHHHHHHHHHHHhccCccccccccccccccccccCCCCCCCeEEEEecCCCeEEEcCCeEEEE
Q 010525 302 SFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIY 381 (508)
Q Consensus 302 ~~~aiiDSGTs~t~LP~~~~~~l~~~i~~~v~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~i~~~~~~~~ 381 (508)
...+||||||+++++|++++++|.+++... .. ... +|..+|.....+|+|+|+| |++.+.|++++|++.
T Consensus 206 ~~~aiiDSGTt~~~~p~~~~~~l~~~~~~~----~~-~~~-----~~~~~C~~~~~~P~i~f~f-gg~~~~l~~~~y~~~ 274 (325)
T cd05490 206 GCEAIVDTGTSLITGPVEEVRALQKAIGAV----PL-IQG-----EYMIDCEKIPTLPVISFSL-GGKVYPLTGEDYILK 274 (325)
T ss_pred CCEEEECCCCccccCCHHHHHHHHHHhCCc----cc-cCC-----CEEecccccccCCCEEEEE-CCEEEEEChHHeEEe
Confidence 568999999999999999999998886431 11 111 2344454446799999999 788999999999987
Q ss_pred eeccccEEEE-EEEec-----CCCceEEcceeeeeEEEEEeCCCCEEEEee
Q 010525 382 GTQVVTGFCL-AIQPV-----DGDIGTIGQNFMTGYRVVFDRENLKLGWSH 426 (508)
Q Consensus 382 ~~~~~~~~Cl-~i~~~-----~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~ 426 (508)
........|+ +|+.. ..+.||||+.|||++|+|||++++|||||+
T Consensus 275 ~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 275 VSQRGTTICLSGFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred ccCCCCCEEeeEEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 5432245787 57652 235799999999999999999999999996
No 7
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=3.1e-49 Score=401.32 Aligned_cols=290 Identities=21% Similarity=0.375 Sum_probs=234.1
Q ss_pred ceeeeecCCCceeEeccccCCceeEEecc-CC--CCCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCC
Q 010525 81 FQMLFPSQGSKTMSLGNDFGCDLLWIPCD-CV--RCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQN 157 (508)
Q Consensus 81 ~~~l~~~~g~q~~~l~~DTGS~~~WV~c~-C~--~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~ 157 (508)
...|.+|+|+|+++|++||||+++||+|. |. .|.. ++.|||++|+|++...
T Consensus 2 ~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C~~------------~~~y~~~~SsT~~~~~-------------- 55 (316)
T cd05486 2 FGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQACTK------------HNRFQPSESSTYVSNG-------------- 55 (316)
T ss_pred eEEEEECCCCcEEEEEEcCCCccEEEecCCCCCcccCc------------cceECCCCCcccccCC--------------
Confidence 35688899999999999999999999998 86 4643 4689999999998654
Q ss_pred CCCCCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCCCCCCCCeEEecCCCCCC-----
Q 010525 158 PKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS----- 232 (508)
Q Consensus 158 ~~~~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~~~~~~dGIlGLg~~~~S----- 232 (508)
|+|++.|++| ++.|.+++|+|+|++. ...++.|||+..+.+..+.....|||||||++.++
T Consensus 56 ----~~~~i~Yg~g--~~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~ 121 (316)
T cd05486 56 ----EAFSIQYGTG--SLTGIIGIDQVTVEGI--------TVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVT 121 (316)
T ss_pred ----cEEEEEeCCc--EEEEEeeecEEEECCE--------EEcCEEEEEeeccCcccccccccceEeccCchhhccCCCC
Confidence 8999999996 6899999999999875 34689999998877654444457999999997654
Q ss_pred -hHHHHHhcCCc-cceeEEeeecC----CCccEEeccCCCCC----ceEeeeEEcCCCceeEEEEeeeEEECCeeec-cC
Q 010525 233 -VPSLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPAT----QQSTSFLASNGKYITYIIGVETCCIGSSCLK-QT 301 (508)
Q Consensus 233 -~~~qL~~~gli-~~~FSl~l~~~----~~G~i~fG~~d~~~----~~~tp~v~~~~~~~~y~V~l~~i~Vg~~~~~-~~ 301 (508)
+.++|+++|+| +++||+||.++ ..|.|+||++|+.+ +.|+|+.. ..+|.|++++|.||++.+. ..
T Consensus 122 p~~~~l~~qg~i~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~----~~~w~v~l~~i~v~g~~~~~~~ 197 (316)
T cd05486 122 PVFDNMMAQNLVELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTV----QGYWQIQLDNIQVGGTVIFCSD 197 (316)
T ss_pred CHHHHHHhcCCCCCCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCC----ceEEEEEeeEEEEecceEecCC
Confidence 47889999999 78999999864 36999999999864 46888742 4799999999999998765 34
Q ss_pred ccceEEccCccceeccHHHHHHHHHHHHHhccCccccccccccccccccccCCCCCCCeEEEEecCCCeEEEcCCeEEEE
Q 010525 302 SFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIY 381 (508)
Q Consensus 302 ~~~aiiDSGTs~t~LP~~~~~~l~~~i~~~v~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~i~~~~~~~~ 381 (508)
...+||||||+++++|++++++|.+++.. ... . .+|..+|.....+|+|+|+| +|..+++++++|++.
T Consensus 198 ~~~aiiDTGTs~~~lP~~~~~~l~~~~~~----~~~--~-----~~~~~~C~~~~~~p~i~f~f-~g~~~~l~~~~y~~~ 265 (316)
T cd05486 198 GCQAIVDTGTSLITGPSGDIKQLQNYIGA----TAT--D-----GEYGVDCSTLSLMPSVTFTI-NGIPYSLSPQAYTLE 265 (316)
T ss_pred CCEEEECCCcchhhcCHHHHHHHHHHhCC----ccc--C-----CcEEEeccccccCCCEEEEE-CCEEEEeCHHHeEEe
Confidence 56899999999999999999998777532 111 1 12444555556799999999 678999999999886
Q ss_pred eeccccEEEE-EEEecC-----CCceEEcceeeeeEEEEEeCCCCEEEEee
Q 010525 382 GTQVVTGFCL-AIQPVD-----GDIGTIGQNFMTGYRVVFDRENLKLGWSH 426 (508)
Q Consensus 382 ~~~~~~~~Cl-~i~~~~-----~~~~IlG~~fl~~~yvVFD~e~~rIGfa~ 426 (508)
........|+ +|+..+ ++.||||+.|||++|+|||.+++|||||+
T Consensus 266 ~~~~~~~~C~~~~~~~~~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 266 DQSDGGGYCSSGFQGLDIPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred cccCCCCEEeeEEEECCCCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 5221245676 676532 35799999999999999999999999996
No 8
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=4.4e-49 Score=400.30 Aligned_cols=291 Identities=22% Similarity=0.373 Sum_probs=237.9
Q ss_pred CCceeeeecCCCceeEeccccCCceeEEecc-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCC
Q 010525 79 PQFQMLFPSQGSKTMSLGNDFGCDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQN 157 (508)
Q Consensus 79 ~~~~~l~~~~g~q~~~l~~DTGS~~~WV~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~ 157 (508)
.+...|..|+++|++.+++||||+++||+|. |..|.- ..++.|||++|+|++...
T Consensus 10 ~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c----------~~~~~f~~~~Sst~~~~~-------------- 65 (317)
T cd05478 10 EYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQAC----------SNHNRFNPRQSSTYQSTG-------------- 65 (317)
T ss_pred EEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccc----------cccCcCCCCCCcceeeCC--------------
Confidence 3566788899999999999999999999998 875321 134799999999999755
Q ss_pred CCCCCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCCCCCCCCeEEecCCCCC------
Q 010525 158 PKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEI------ 231 (508)
Q Consensus 158 ~~~~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~~~~~~dGIlGLg~~~~------ 231 (508)
|.|++.|++| ++.|.+++|+|+|++. ..+++.|||++...+.+......|||||||+..+
T Consensus 66 ----~~~~~~yg~g--s~~G~~~~D~v~ig~~--------~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~ 131 (317)
T cd05478 66 ----QPLSIQYGTG--SMTGILGYDTVQVGGI--------SDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGAT 131 (317)
T ss_pred ----cEEEEEECCc--eEEEEEeeeEEEECCE--------EECCEEEEEEEecCccccccccccceeeeccchhcccCCC
Confidence 8899999996 4799999999999876 4468999999988776554445699999998754
Q ss_pred ChHHHHHhcCCc-cceeEEeeecCC--CccEEeccCCCCC----ceEeeeEEcCCCceeEEEEeeeEEECCeeecc-Ccc
Q 010525 232 SVPSLLAKAGLI-RNSFSMCFDKDD--SGRIFFGDQGPAT----QQSTSFLASNGKYITYIIGVETCCIGSSCLKQ-TSF 303 (508)
Q Consensus 232 S~~~qL~~~gli-~~~FSl~l~~~~--~G~i~fG~~d~~~----~~~tp~v~~~~~~~~y~V~l~~i~Vg~~~~~~-~~~ 303 (508)
+++++|+++|+| +++||+||.+++ .|.|+||++|..+ ..|+|+.. ..+|.|++++|.||++.+.. ...
T Consensus 132 ~~~~~L~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~----~~~w~v~l~~v~v~g~~~~~~~~~ 207 (317)
T cd05478 132 PVFDNMMSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTA----ETYWQITVDSVTINGQVVACSGGC 207 (317)
T ss_pred CHHHHHHhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCC----CcEEEEEeeEEEECCEEEccCCCC
Confidence 478899999999 799999998763 6899999999754 45777742 47999999999999998863 346
Q ss_pred ceEEccCccceeccHHHHHHHHHHHHHhccCccccccccccccccccccCCCCCCCeEEEEecCCCeEEEcCCeEEEEee
Q 010525 304 KAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGT 383 (508)
Q Consensus 304 ~aiiDSGTs~t~LP~~~~~~l~~~i~~~v~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~i~~~~~~~~~~ 383 (508)
.+||||||++++||+++|++|.+++.... . . ..+|..+|....++|.|+|+| +|+.+.|++++|+...
T Consensus 208 ~~iiDTGts~~~lp~~~~~~l~~~~~~~~----~-~-----~~~~~~~C~~~~~~P~~~f~f-~g~~~~i~~~~y~~~~- 275 (317)
T cd05478 208 QAIVDTGTSLLVGPSSDIANIQSDIGASQ----N-Q-----NGEMVVNCSSISSMPDVVFTI-NGVQYPLPPSAYILQD- 275 (317)
T ss_pred EEEECCCchhhhCCHHHHHHHHHHhCCcc----c-c-----CCcEEeCCcCcccCCcEEEEE-CCEEEEECHHHheecC-
Confidence 89999999999999999999988864321 1 1 123445555456799999999 6789999999998764
Q ss_pred ccccEEEE-EEEecC-CCceEEcceeeeeEEEEEeCCCCEEEEee
Q 010525 384 QVVTGFCL-AIQPVD-GDIGTIGQNFMTGYRVVFDRENLKLGWSH 426 (508)
Q Consensus 384 ~~~~~~Cl-~i~~~~-~~~~IlG~~fl~~~yvVFD~e~~rIGfa~ 426 (508)
...|+ +|+..+ .+.||||++|||++|+|||++++|||||+
T Consensus 276 ---~~~C~~~~~~~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 276 ---QGSCTSGFQSMGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred ---CCEEeEEEEeCCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 34676 577755 36799999999999999999999999996
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=2.5e-48 Score=395.05 Aligned_cols=289 Identities=20% Similarity=0.379 Sum_probs=235.8
Q ss_pred CceeeeecCCCceeEeccccCCceeEEecc-CCC--CCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCC
Q 010525 80 QFQMLFPSQGSKTMSLGNDFGCDLLWIPCD-CVR--CAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQ 156 (508)
Q Consensus 80 ~~~~l~~~~g~q~~~l~~DTGS~~~WV~c~-C~~--C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~ 156 (508)
+...|..|+|+|++.+++||||+++||+|. |.. |.+ ++.|||++|+||+...
T Consensus 4 y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C~~------------~~~f~~~~SsT~~~~~------------- 58 (318)
T cd05477 4 YYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQACTN------------HTKFNPSQSSTYSTNG------------- 58 (318)
T ss_pred EEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccccc------------cCCCCcccCCCceECC-------------
Confidence 456788899999999999999999999998 863 543 4699999999999644
Q ss_pred CCCCCCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCCCCCCCCeEEecCCCC------
Q 010525 157 NPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGE------ 230 (508)
Q Consensus 157 ~~~~~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~~~~~~dGIlGLg~~~------ 230 (508)
|.|++.|++| ++.|.+++|+|+|++. ..+++.|||++...+..+.....+||||||++.
T Consensus 59 -----~~~~~~Yg~G--s~~G~~~~D~i~~g~~--------~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~ 123 (318)
T cd05477 59 -----ETFSLQYGSG--SLTGIFGYDTVTVQGI--------IITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGA 123 (318)
T ss_pred -----cEEEEEECCc--EEEEEEEeeEEEECCE--------EEcCEEEEEEEecccccccccceeeEeecCcccccccCC
Confidence 8999999997 5799999999999876 447899999998765432223469999999863
Q ss_pred CChHHHHHhcCCc-cceeEEeeecC---CCccEEeccCCCCC----ceEeeeEEcCCCceeEEEEeeeEEECCeeec--c
Q 010525 231 ISVPSLLAKAGLI-RNSFSMCFDKD---DSGRIFFGDQGPAT----QQSTSFLASNGKYITYIIGVETCCIGSSCLK--Q 300 (508)
Q Consensus 231 ~S~~~qL~~~gli-~~~FSl~l~~~---~~G~i~fG~~d~~~----~~~tp~v~~~~~~~~y~V~l~~i~Vg~~~~~--~ 300 (508)
.+++++|+++|+| +++||+||.++ ..|.|+||++|+.+ ..|+|+.. ..+|.|++++|.||++.+. .
T Consensus 124 ~~~~~~L~~~g~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~~~~ 199 (318)
T cd05477 124 TTVMQGMMQQNLLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTS----ETYWQIGIQGFQINGQATGWCS 199 (318)
T ss_pred CCHHHHHHhcCCcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCC----ceEEEEEeeEEEECCEEecccC
Confidence 4678999999999 89999999875 46999999999765 45788742 4799999999999998875 2
Q ss_pred CccceEEccCccceeccHHHHHHHHHHHHHhccCccccccccccccccccccCCCCCCCeEEEEecCCCeEEEcCCeEEE
Q 010525 301 TSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVI 380 (508)
Q Consensus 301 ~~~~aiiDSGTs~t~LP~~~~~~l~~~i~~~v~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~i~~~~~~~ 380 (508)
....+||||||++++||+++|++|++++..+... ..+|..+|.....+|+|+|+| ++.++.+++++|+.
T Consensus 200 ~~~~~iiDSGtt~~~lP~~~~~~l~~~~~~~~~~----------~~~~~~~C~~~~~~p~l~~~f-~g~~~~v~~~~y~~ 268 (318)
T cd05477 200 QGCQAIVDTGTSLLTAPQQVMSTLMQSIGAQQDQ----------YGQYVVNCNNIQNLPTLTFTI-NGVSFPLPPSAYIL 268 (318)
T ss_pred CCceeeECCCCccEECCHHHHHHHHHHhCCcccc----------CCCEEEeCCccccCCcEEEEE-CCEEEEECHHHeEe
Confidence 4567999999999999999999999887543211 124556665556899999999 67899999999988
Q ss_pred EeeccccEEE-EEEEec------CCCceEEcceeeeeEEEEEeCCCCEEEEeeC
Q 010525 381 YGTQVVTGFC-LAIQPV------DGDIGTIGQNFMTGYRVVFDRENLKLGWSHS 427 (508)
Q Consensus 381 ~~~~~~~~~C-l~i~~~------~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~ 427 (508)
.. ...| +++++. +.+.||||+.|||++|+|||++++|||||++
T Consensus 269 ~~----~~~C~~~i~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 269 QN----NGYCTVGIEPTYLPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred cC----CCeEEEEEEecccCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 64 2356 588753 1246999999999999999999999999984
No 10
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=3.6e-48 Score=395.43 Aligned_cols=297 Identities=21% Similarity=0.352 Sum_probs=237.9
Q ss_pred CCceeeeecCCCceeEeccccCCceeEEecc-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCC
Q 010525 79 PQFQMLFPSQGSKTMSLGNDFGCDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQN 157 (508)
Q Consensus 79 ~~~~~l~~~~g~q~~~l~~DTGS~~~WV~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~ 157 (508)
.+...|.+|+|+|++.|++||||+++||+|. |..|... | ..++.|+|++|+|++...
T Consensus 11 ~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~---c-----~~~~~y~~~~Sst~~~~~-------------- 68 (329)
T cd05485 11 QYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIA---C-----LLHNKYDSTKSSTYKKNG-------------- 68 (329)
T ss_pred eEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCcc---c-----cCCCeECCcCCCCeEECC--------------
Confidence 3566788999999999999999999999998 8743211 1 124689999999999654
Q ss_pred CCCCCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCCCCCCCCeEEecCCCCCC-----
Q 010525 158 PKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS----- 232 (508)
Q Consensus 158 ~~~~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~~~~~~dGIlGLg~~~~S----- 232 (508)
|.|.+.|++| ++.|.+++|+|+|++. ..+++.|||+.++.+..+.....+||||||++.+|
T Consensus 69 ----~~~~i~Y~~g--~~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~ 134 (329)
T cd05485 69 ----TEFAIQYGSG--SLSGFLSTDTVSVGGV--------SVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVV 134 (329)
T ss_pred ----eEEEEEECCc--eEEEEEecCcEEECCE--------EECCEEEEEEEecCCccccccccceEEEcCCccccccCCC
Confidence 8999999996 5899999999999876 34689999998877643333456999999998765
Q ss_pred -hHHHHHhcCCc-cceeEEeeecC----CCccEEeccCCCCC----ceEeeeEEcCCCceeEEEEeeeEEECCeeeccCc
Q 010525 233 -VPSLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPAT----QQSTSFLASNGKYITYIIGVETCCIGSSCLKQTS 302 (508)
Q Consensus 233 -~~~qL~~~gli-~~~FSl~l~~~----~~G~i~fG~~d~~~----~~~tp~v~~~~~~~~y~V~l~~i~Vg~~~~~~~~ 302 (508)
+..+|+++|+| +++||+||.++ ..|+|+||++|+.+ ..++|+.. ..+|.|+++++.||++.+....
T Consensus 135 p~~~~l~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~~~v~~~~i~v~~~~~~~~~ 210 (329)
T cd05485 135 PVFYNMVNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTR----KGYWQFKMDSVSVGEGEFCSGG 210 (329)
T ss_pred CHHHHHHhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCC----ceEEEEEeeEEEECCeeecCCC
Confidence 45789999999 89999999864 35999999999754 45777742 4799999999999999887566
Q ss_pred cceEEccCccceeccHHHHHHHHHHHHHhccCccccccccccccccccccCCCCCCCeEEEEecCCCeEEEcCCeEEEEe
Q 010525 303 FKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYG 382 (508)
Q Consensus 303 ~~aiiDSGTs~t~LP~~~~~~l~~~i~~~v~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~i~~~~~~~~~ 382 (508)
..+||||||++++||+++|++|.+++.. .... ..||..+|....++|+|+|+| |++.+.|++++|+++.
T Consensus 211 ~~~iiDSGtt~~~lP~~~~~~l~~~~~~----~~~~------~~~~~~~C~~~~~~p~i~f~f-gg~~~~i~~~~yi~~~ 279 (329)
T cd05485 211 CQAIADTGTSLIAGPVDEIEKLNNAIGA----KPII------GGEYMVNCSAIPSLPDITFVL-GGKSFSLTGKDYVLKV 279 (329)
T ss_pred cEEEEccCCcceeCCHHHHHHHHHHhCC----cccc------CCcEEEeccccccCCcEEEEE-CCEEeEEChHHeEEEe
Confidence 7899999999999999999998887642 1111 124555665556789999999 7889999999999876
Q ss_pred eccccEEEE-EEEecC-----CCceEEcceeeeeEEEEEeCCCCEEEEee
Q 010525 383 TQVVTGFCL-AIQPVD-----GDIGTIGQNFMTGYRVVFDRENLKLGWSH 426 (508)
Q Consensus 383 ~~~~~~~Cl-~i~~~~-----~~~~IlG~~fl~~~yvVFD~e~~rIGfa~ 426 (508)
......+|+ +++..+ ++.||||+.|||++|+|||++++|||||+
T Consensus 280 ~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 280 TQMGQTICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred cCCCCCEEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 432245676 577532 35799999999999999999999999985
No 11
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=7.1e-48 Score=391.40 Aligned_cols=281 Identities=24% Similarity=0.383 Sum_probs=228.0
Q ss_pred CCceeeeecCCCceeEeccccCCceeEEecc-CC---CCCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCC
Q 010525 79 PQFQMLFPSQGSKTMSLGNDFGCDLLWIPCD-CV---RCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTS 154 (508)
Q Consensus 79 ~~~~~l~~~~g~q~~~l~~DTGS~~~WV~c~-C~---~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~ 154 (508)
.+...|..|+|+|++.|++||||+++||+|. |. .|.. ++.|||++|+|++...
T Consensus 10 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~~------------~~~y~~~~SsT~~~~~----------- 66 (317)
T cd06098 10 QYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACYF------------HSKYKSSKSSTYKKNG----------- 66 (317)
T ss_pred EEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCccccc------------cCcCCcccCCCcccCC-----------
Confidence 3566788899999999999999999999998 85 5653 4689999999999654
Q ss_pred CCCCCCCCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCCCCCCCCeEEecCCCCCC--
Q 010525 155 CQNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS-- 232 (508)
Q Consensus 155 C~~~~~~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~~~~~~dGIlGLg~~~~S-- 232 (508)
+.+.+.|++| ++.|.+++|+|+|++. ..+++.|||++.+.+..+.....|||||||+...+
T Consensus 67 -------~~~~i~Yg~G--~~~G~~~~D~v~ig~~--------~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~ 129 (317)
T cd06098 67 -------TSASIQYGTG--SISGFFSQDSVTVGDL--------VVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVG 129 (317)
T ss_pred -------CEEEEEcCCc--eEEEEEEeeEEEECCE--------EECCEEEEEEEecCCccccccccceeccccccchhhc
Confidence 7899999997 5799999999999875 44689999998776543333457999999997654
Q ss_pred ----hHHHHHhcCCc-cceeEEeeecC----CCccEEeccCCCCCc----eEeeeEEcCCCceeEEEEeeeEEECCeeec
Q 010525 233 ----VPSLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPATQ----QSTSFLASNGKYITYIIGVETCCIGSSCLK 299 (508)
Q Consensus 233 ----~~~qL~~~gli-~~~FSl~l~~~----~~G~i~fG~~d~~~~----~~tp~v~~~~~~~~y~V~l~~i~Vg~~~~~ 299 (508)
++.+|+++|+| +++||+||.++ ..|.|+||++|+.++ .|+|++. ..+|.|++++|.||++.+.
T Consensus 130 ~~~~~~~~l~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~----~~~w~v~l~~i~v~g~~~~ 205 (317)
T cd06098 130 KAVPVWYNMVEQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTR----KGYWQFEMGDVLIGGKSTG 205 (317)
T ss_pred CCCCHHHHHHhcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCc----CcEEEEEeCeEEECCEEee
Confidence 45789999999 78999999864 369999999998754 5888742 3699999999999998765
Q ss_pred --cCccceEEccCccceeccHHHHHHHHHHHHHhccCccccccccccccccccccCCCCCCCeEEEEecCCCeEEEcCCe
Q 010525 300 --QTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPV 377 (508)
Q Consensus 300 --~~~~~aiiDSGTs~t~LP~~~~~~l~~~i~~~v~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~i~~~~ 377 (508)
.....+||||||+++++|++++++|. ....|+.. .++|+|+|+| |+..+.|++++
T Consensus 206 ~~~~~~~aivDTGTs~~~lP~~~~~~i~-----------------~~~~C~~~-----~~~P~i~f~f-~g~~~~l~~~~ 262 (317)
T cd06098 206 FCAGGCAAIADSGTSLLAGPTTIVTQIN-----------------SAVDCNSL-----SSMPNVSFTI-GGKTFELTPEQ 262 (317)
T ss_pred ecCCCcEEEEecCCcceeCCHHHHHhhh-----------------ccCCcccc-----ccCCcEEEEE-CCEEEEEChHH
Confidence 24467999999999999998776542 12346543 4789999999 78899999999
Q ss_pred EEEEeeccccEEEE-EEEecC-----CCceEEcceeeeeEEEEEeCCCCEEEEee
Q 010525 378 FVIYGTQVVTGFCL-AIQPVD-----GDIGTIGQNFMTGYRVVFDRENLKLGWSH 426 (508)
Q Consensus 378 ~~~~~~~~~~~~Cl-~i~~~~-----~~~~IlG~~fl~~~yvVFD~e~~rIGfa~ 426 (508)
|++....+....|+ +++..+ ++.||||++|||++|+|||++|+|||||+
T Consensus 263 yi~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 263 YILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred eEEeecCCCCCEEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 99876443345786 576432 34799999999999999999999999995
No 12
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=9.4e-48 Score=406.73 Aligned_cols=297 Identities=25% Similarity=0.382 Sum_probs=237.4
Q ss_pred CCceeeeecCCCceeEeccccCCceeEEecc-CCC--CCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCC
Q 010525 79 PQFQMLFPSQGSKTMSLGNDFGCDLLWIPCD-CVR--CAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSC 155 (508)
Q Consensus 79 ~~~~~l~~~~g~q~~~l~~DTGS~~~WV~c~-C~~--C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C 155 (508)
++...|..|+|+|+|.|++||||+++||+|. |.. |. .++.|||++||||+.+.+.
T Consensus 120 ~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C~------------~~~~yd~s~SSTy~~~~~~---------- 177 (482)
T PTZ00165 120 QYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGCA------------PHRKFDPKKSSTYTKLKLG---------- 177 (482)
T ss_pred eEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCccccc------------ccCCCCccccCCcEecCCC----------
Confidence 3567889999999999999999999999998 864 43 3479999999999985411
Q ss_pred CCCCCCCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCCCCCCCCeEEecCCCCC----
Q 010525 156 QNPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEI---- 231 (508)
Q Consensus 156 ~~~~~~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~~~~~~dGIlGLg~~~~---- 231 (508)
.....+.++|++| +..|.+++|+|+|++. ..+++.|||++.+++..+.....|||||||++.+
T Consensus 178 ---~~~~~~~i~YGsG--s~~G~l~~DtV~ig~l--------~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s 244 (482)
T PTZ00165 178 ---DESAETYIQYGTG--ECVLALGKDTVKIGGL--------KVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKE 244 (482)
T ss_pred ---CccceEEEEeCCC--cEEEEEEEEEEEECCE--------EEccEEEEEEEeccccccccccccceeecCCCcccccc
Confidence 0112577999997 6789999999999876 4578999999988765444456799999999864
Q ss_pred -----ChHHHHHhcCCc-cceeEEeeecC--CCccEEeccCCCCC------ceEeeeEEcCCCceeEEEEeeeEEECCee
Q 010525 232 -----SVPSLLAKAGLI-RNSFSMCFDKD--DSGRIFFGDQGPAT------QQSTSFLASNGKYITYIIGVETCCIGSSC 297 (508)
Q Consensus 232 -----S~~~qL~~~gli-~~~FSl~l~~~--~~G~i~fG~~d~~~------~~~tp~v~~~~~~~~y~V~l~~i~Vg~~~ 297 (508)
+++++|++||+| +++||+||.++ ..|.|+||++|+.. +.|+|++. ..+|.|++++|.||++.
T Consensus 245 ~~~~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~----~~yW~i~l~~i~vgg~~ 320 (482)
T PTZ00165 245 SKKALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIS----TDYWEIEVVDILIDGKS 320 (482)
T ss_pred cCCCCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEccc----cceEEEEeCeEEECCEE
Confidence 467889999999 89999999764 46999999998742 45777743 47999999999999987
Q ss_pred ec--cCccceEEccCccceeccHHHHHHHHHHHHHhccCccccccccccccccccccCCCCCCCeEEEEecC--C--CeE
Q 010525 298 LK--QTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQ--N--NSF 371 (508)
Q Consensus 298 ~~--~~~~~aiiDSGTs~t~LP~~~~~~l~~~i~~~v~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g--~--~~~ 371 (508)
+. ....++|+||||+++++|+++|++|.+++.. ...|+.. ..+|+|+|+|.| + ..+
T Consensus 321 ~~~~~~~~~aIiDTGTSli~lP~~~~~~i~~~i~~-------------~~~C~~~-----~~lP~itf~f~g~~g~~v~~ 382 (482)
T PTZ00165 321 LGFCDRKCKAAIDTGSSLITGPSSVINPLLEKIPL-------------EEDCSNK-----DSLPRISFVLEDVNGRKIKF 382 (482)
T ss_pred eeecCCceEEEEcCCCccEeCCHHHHHHHHHHcCC-------------ccccccc-----ccCCceEEEECCCCCceEEE
Confidence 65 2567899999999999999999998887532 1246543 578999999953 2 278
Q ss_pred EEcCCeEEEEee--ccccEEEE-EEEecC-----CCceEEcceeeeeEEEEEeCCCCEEEEeeCCCCCC
Q 010525 372 VVNNPVFVIYGT--QVVTGFCL-AIQPVD-----GDIGTIGQNFMTGYRVVFDRENLKLGWSHSNCQDL 432 (508)
Q Consensus 372 ~i~~~~~~~~~~--~~~~~~Cl-~i~~~~-----~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C~~~ 432 (508)
.+++++|++... ......|+ +++..+ ++.||||++|||+||+|||++|+|||||+++|...
T Consensus 383 ~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~~ 451 (482)
T PTZ00165 383 DMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQS 451 (482)
T ss_pred EEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCCC
Confidence 999999998741 11245674 787643 35799999999999999999999999999998654
No 13
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=1.5e-47 Score=396.20 Aligned_cols=320 Identities=19% Similarity=0.224 Sum_probs=241.8
Q ss_pred CceeeeecCCCceeEeccccCCceeEEecc-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCC
Q 010525 80 QFQMLFPSQGSKTMSLGNDFGCDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNP 158 (508)
Q Consensus 80 ~~~~l~~~~g~q~~~l~~DTGS~~~WV~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~~ 158 (508)
+...|.+|+|+|++.|++||||+++||+|. |..| ++.|||++|+|++...
T Consensus 4 Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~~~--------------~~~f~~~~SsT~~~~~--------------- 54 (364)
T cd05473 4 YYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHPFI--------------HTYFHRELSSTYRDLG--------------- 54 (364)
T ss_pred eEEEEEecCCCceEEEEEecCCcceEEEcCCCccc--------------cccCCchhCcCcccCC---------------
Confidence 456788999999999999999999999997 6322 3689999999999765
Q ss_pred CCCCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCCCCCCCCeEEecCCCCCC------
Q 010525 159 KQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEIS------ 232 (508)
Q Consensus 159 ~~~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~~~~~~dGIlGLg~~~~S------ 232 (508)
|.|++.|++| ++.|.+++|+|+|++... ....+.|++.....+.+......|||||||++.++
T Consensus 55 ---~~~~i~Yg~G--s~~G~~~~D~v~ig~~~~------~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~ 123 (364)
T cd05473 55 ---KGVTVPYTQG--SWEGELGTDLVSIPKGPN------VTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSV 123 (364)
T ss_pred ---ceEEEEECcc--eEEEEEEEEEEEECCCCc------cceEEeeEEEeccccceecccccceeeeecccccccCCCCC
Confidence 8999999996 679999999999985411 11234466776655555444456999999998653
Q ss_pred --hHHHHHhcCCccceeEEeeec-----------CCCccEEeccCCCCC----ceEeeeEEcCCCceeEEEEeeeEEECC
Q 010525 233 --VPSLLAKAGLIRNSFSMCFDK-----------DDSGRIFFGDQGPAT----QQSTSFLASNGKYITYIIGVETCCIGS 295 (508)
Q Consensus 233 --~~~qL~~~gli~~~FSl~l~~-----------~~~G~i~fG~~d~~~----~~~tp~v~~~~~~~~y~V~l~~i~Vg~ 295 (508)
+.++|.+|+.++++||++|+. ...|.|+||++|+.+ +.|+|++. ..+|.|++++|.||+
T Consensus 124 ~~~~~~l~~q~~~~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~----~~~~~v~l~~i~vg~ 199 (364)
T cd05473 124 EPFFDSLVKQTGIPDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIRE----EWYYEVIILKLEVGG 199 (364)
T ss_pred CCHHHHHHhccCCccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCc----ceeEEEEEEEEEECC
Confidence 567898888888899998852 136999999999754 46888853 478999999999999
Q ss_pred eeeccC--c---cceEEccCccceeccHHHHHHHHHHHHHhccCcccccc--ccccccccccccCCCCCCCeEEEEecCC
Q 010525 296 SCLKQT--S---FKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFE--GYPWKCCYKSSSQRLPKLPSVKLMFPQN 368 (508)
Q Consensus 296 ~~~~~~--~---~~aiiDSGTs~t~LP~~~~~~l~~~i~~~v~~~~~~~~--~~~~~~C~~~~~~~~~~~P~i~f~f~g~ 368 (508)
+.+... . ..+||||||++++||+++|++|.+++.++......... ......|+.........+|+|+|+|.|+
T Consensus 200 ~~~~~~~~~~~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~ 279 (364)
T cd05473 200 QSLNLDCKEYNYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDE 279 (364)
T ss_pred EecccccccccCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccC
Confidence 987631 1 26999999999999999999999999876532211111 1112468765433334699999999753
Q ss_pred -----CeEEEcCCeEEEEeec-cccEEEEEEEec-CCCceEEcceeeeeEEEEEeCCCCEEEEeeCCCCCCCCCCcccCC
Q 010525 369 -----NSFVVNNPVFVIYGTQ-VVTGFCLAIQPV-DGDIGTIGQNFMTGYRVVFDRENLKLGWSHSNCQDLNDGTKSPLT 441 (508)
Q Consensus 369 -----~~~~i~~~~~~~~~~~-~~~~~Cl~i~~~-~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C~~~~~~~~~p~~ 441 (508)
..+.++++.|+..... +....|+++... ..+.||||+.|||++|+|||++++|||||+.+|...+.-++..+.
T Consensus 280 ~~~~~~~l~l~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~~~~~~~~~~ 359 (364)
T cd05473 280 NSSQSFRITILPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEHDGFRTSEIE 359 (364)
T ss_pred CCCceEEEEECHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEecccccccCcceeeec
Confidence 2678888888875421 124578754322 235799999999999999999999999999999987655555555
Q ss_pred CC
Q 010525 442 PG 443 (508)
Q Consensus 442 ~~ 443 (508)
+|
T Consensus 360 ~~ 361 (364)
T cd05473 360 GP 361 (364)
T ss_pred cC
Confidence 53
No 14
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=8.2e-48 Score=391.48 Aligned_cols=288 Identities=23% Similarity=0.375 Sum_probs=234.5
Q ss_pred CceeeeecCCCceeEeccccCCceeEEecc-CC--CCCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCC
Q 010525 80 QFQMLFPSQGSKTMSLGNDFGCDLLWIPCD-CV--RCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQ 156 (508)
Q Consensus 80 ~~~~l~~~~g~q~~~l~~DTGS~~~WV~c~-C~--~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~ 156 (508)
+...|..++|+|++.|++||||+++||+|. |. .|.. ++.|+|++|+|++..
T Consensus 11 Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C~~------------~~~y~~~~Sst~~~~-------------- 64 (320)
T cd05488 11 YFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIACFL------------HSKYDSSASSTYKAN-------------- 64 (320)
T ss_pred EEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCcccCC------------cceECCCCCcceeeC--------------
Confidence 566788899999999999999999999998 86 4643 368999999999854
Q ss_pred CCCCCCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCCCCCCCCeEEecCCCCCCh---
Q 010525 157 NPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISV--- 233 (508)
Q Consensus 157 ~~~~~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~~~~~~dGIlGLg~~~~S~--- 233 (508)
.|.|.+.|++| ++.|.+++|+|+|++. ..+++.|||+..+.+..+.....|||||||++..+.
T Consensus 65 ----~~~~~~~y~~g--~~~G~~~~D~v~ig~~--------~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~ 130 (320)
T cd05488 65 ----GTEFKIQYGSG--SLEGFVSQDTLSIGDL--------TIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKI 130 (320)
T ss_pred ----CCEEEEEECCc--eEEEEEEEeEEEECCE--------EECCEEEEEEecCCCcceeeeeeceEEecCCccccccCC
Confidence 38999999996 5899999999999876 346899999988776543433569999999987653
Q ss_pred ---HHHHHhcCCc-cceeEEeeecC--CCccEEeccCCCCC----ceEeeeEEcCCCceeEEEEeeeEEECCeeeccCcc
Q 010525 234 ---PSLLAKAGLI-RNSFSMCFDKD--DSGRIFFGDQGPAT----QQSTSFLASNGKYITYIIGVETCCIGSSCLKQTSF 303 (508)
Q Consensus 234 ---~~qL~~~gli-~~~FSl~l~~~--~~G~i~fG~~d~~~----~~~tp~v~~~~~~~~y~V~l~~i~Vg~~~~~~~~~ 303 (508)
..+|+++|+| +++||+||++. ..|.|+||++|+.+ ..|+|++. ..+|.|++++|.||++.+.....
T Consensus 131 ~~~~~~l~~qg~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~----~~~w~v~l~~i~vg~~~~~~~~~ 206 (320)
T cd05488 131 VPPFYNMINQGLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRR----KAYWEVELEKIGLGDEELELENT 206 (320)
T ss_pred CCHHHHHHhcCCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCc----CcEEEEEeCeEEECCEEeccCCC
Confidence 3578899999 89999999874 57999999999754 46888753 36899999999999998876667
Q ss_pred ceEEccCccceeccHHHHHHHHHHHHHhccCccccccccccccccccccCCCCCCCeEEEEecCCCeEEEcCCeEEEEee
Q 010525 304 KAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGT 383 (508)
Q Consensus 304 ~aiiDSGTs~t~LP~~~~~~l~~~i~~~v~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~i~~~~~~~~~~ 383 (508)
.++|||||++++||++++++|.+++.... . ...+|..+|.....+|.|+|+| +++++.|++++|+...
T Consensus 207 ~~ivDSGtt~~~lp~~~~~~l~~~~~~~~-----~-----~~~~~~~~C~~~~~~P~i~f~f-~g~~~~i~~~~y~~~~- 274 (320)
T cd05488 207 GAAIDTGTSLIALPSDLAEMLNAEIGAKK-----S-----WNGQYTVDCSKVDSLPDLTFNF-DGYNFTLGPFDYTLEV- 274 (320)
T ss_pred eEEEcCCcccccCCHHHHHHHHHHhCCcc-----c-----cCCcEEeeccccccCCCEEEEE-CCEEEEECHHHheecC-
Confidence 89999999999999999999887763221 1 1234555565556899999999 6789999999998753
Q ss_pred ccccEEEE-EEEecC-----CCceEEcceeeeeEEEEEeCCCCEEEEee
Q 010525 384 QVVTGFCL-AIQPVD-----GDIGTIGQNFMTGYRVVFDRENLKLGWSH 426 (508)
Q Consensus 384 ~~~~~~Cl-~i~~~~-----~~~~IlG~~fl~~~yvVFD~e~~rIGfa~ 426 (508)
...|+ .+...+ .+.||||++|||++|+|||++++|||||+
T Consensus 275 ---~g~C~~~~~~~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 275 ---SGSCISAFTGMDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred ---CCeEEEEEEECcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 23577 455432 34799999999999999999999999986
No 15
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=3.1e-47 Score=388.25 Aligned_cols=296 Identities=21% Similarity=0.357 Sum_probs=232.6
Q ss_pred CCceeeeecCCCceeEeccccCCceeEEecc-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCC
Q 010525 79 PQFQMLFPSQGSKTMSLGNDFGCDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQN 157 (508)
Q Consensus 79 ~~~~~l~~~~g~q~~~l~~DTGS~~~WV~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~ 157 (508)
.+...|.+|+|+|+++|++||||+++||+|. |..|... |..++.|||++|+|++...
T Consensus 8 ~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~--------c~~~~~y~~~~SsT~~~~~-------------- 65 (326)
T cd05487 8 QYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTA--------CVTHNLYDASDSSTYKENG-------------- 65 (326)
T ss_pred eEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchh--------hcccCcCCCCCCeeeeECC--------------
Confidence 3566788999999999999999999999997 8653211 1135799999999999654
Q ss_pred CCCCCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCCCCCCCCeEEecCCCCC------
Q 010525 158 PKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEI------ 231 (508)
Q Consensus 158 ~~~~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~~~~~~dGIlGLg~~~~------ 231 (508)
|.|++.|++| ++.|.+++|+|+|++. .. ++.|||+....+.-+.....|||||||++..
T Consensus 66 ----~~~~~~Yg~g--~~~G~~~~D~v~~g~~--------~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~ 130 (326)
T cd05487 66 ----TEFTIHYASG--TVKGFLSQDIVTVGGI--------PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVT 130 (326)
T ss_pred ----EEEEEEeCCc--eEEEEEeeeEEEECCE--------Ee-eEEEEEEEeccCCccceeecceEEecCChhhcccCCC
Confidence 8999999996 5899999999999865 22 4789999875432112234699999999754
Q ss_pred ChHHHHHhcCCc-cceeEEeeecC----CCccEEeccCCCCCc----eEeeeEEcCCCceeEEEEeeeEEECCeeecc-C
Q 010525 232 SVPSLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPATQ----QSTSFLASNGKYITYIIGVETCCIGSSCLKQ-T 301 (508)
Q Consensus 232 S~~~qL~~~gli-~~~FSl~l~~~----~~G~i~fG~~d~~~~----~~tp~v~~~~~~~~y~V~l~~i~Vg~~~~~~-~ 301 (508)
+++++|++||+| +++||+||+++ ..|.|+||++|+.++ .++|+. ...+|.|++++|.||++.+.. .
T Consensus 131 ~~~~~L~~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~----~~~~w~v~l~~i~vg~~~~~~~~ 206 (326)
T cd05487 131 PVFDNIMSQGVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTS----KTGFWQIQMKGVSVGSSTLLCED 206 (326)
T ss_pred CHHHHHHhcCCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECC----cCceEEEEecEEEECCEEEecCC
Confidence 357789999999 89999999864 369999999998764 345542 247999999999999998752 4
Q ss_pred ccceEEccCccceeccHHHHHHHHHHHHHhccCccccccccccccccccccCCCCCCCeEEEEecCCCeEEEcCCeEEEE
Q 010525 302 SFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIY 381 (508)
Q Consensus 302 ~~~aiiDSGTs~t~LP~~~~~~l~~~i~~~v~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~i~~~~~~~~ 381 (508)
...+||||||++++||++++++|.+++... .. . .+|..+|.....+|.|+|+| |+..+.|++++|++.
T Consensus 207 ~~~aiiDSGts~~~lP~~~~~~l~~~~~~~----~~--~-----~~y~~~C~~~~~~P~i~f~f-gg~~~~v~~~~yi~~ 274 (326)
T cd05487 207 GCTAVVDTGASFISGPTSSISKLMEALGAK----ER--L-----GDYVVKCNEVPTLPDISFHL-GGKEYTLSSSDYVLQ 274 (326)
T ss_pred CCEEEECCCccchhCcHHHHHHHHHHhCCc----cc--C-----CCEEEeccccCCCCCEEEEE-CCEEEEeCHHHhEEe
Confidence 467999999999999999999998886432 11 1 12444555556789999999 788999999999987
Q ss_pred eeccccEEEE-EEEecC-----CCceEEcceeeeeEEEEEeCCCCEEEEeeC
Q 010525 382 GTQVVTGFCL-AIQPVD-----GDIGTIGQNFMTGYRVVFDRENLKLGWSHS 427 (508)
Q Consensus 382 ~~~~~~~~Cl-~i~~~~-----~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~ 427 (508)
........|+ +|+..+ ++.||||++|||++|+|||++++|||||++
T Consensus 275 ~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 275 DSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred ccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 6443345565 777532 357999999999999999999999999984
No 16
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=1.1e-46 Score=374.87 Aligned_cols=259 Identities=30% Similarity=0.583 Sum_probs=215.4
Q ss_pred CceeeeecCCCceeEeccccCCceeEEecc--CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCC
Q 010525 80 QFQMLFPSQGSKTMSLGNDFGCDLLWIPCD--CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQN 157 (508)
Q Consensus 80 ~~~~l~~~~g~q~~~l~~DTGS~~~WV~c~--C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~ 157 (508)
+...|..++|+|++.|++||||+++||+|. |..|
T Consensus 3 Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c-------------------------------------------- 38 (273)
T cd05475 3 YYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC-------------------------------------------- 38 (273)
T ss_pred eEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC--------------------------------------------
Confidence 456788899999999999999999999983 4433
Q ss_pred CCCCCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCC-CCCCCCeEEecCCCCCChHHH
Q 010525 158 PKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYL-DGVAPDGLIGLGLGEISVPSL 236 (508)
Q Consensus 158 ~~~~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~-~~~~~dGIlGLg~~~~S~~~q 236 (508)
.|.|++.|+|+ +.++|.+++|+|+|+...+. ...+++.|||+..+.+.+. .....|||||||++.+|+++|
T Consensus 39 ---~c~~~i~Ygd~-~~~~G~~~~D~v~~~~~~~~----~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~q 110 (273)
T cd05475 39 ---QCDYEIEYADG-GSSMGVLVTDIFSLKLTNGS----RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQ 110 (273)
T ss_pred ---cCccEeEeCCC-CceEEEEEEEEEEEeecCCC----cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHH
Confidence 28999999974 68999999999999754222 1346899999988776543 233569999999999999999
Q ss_pred HHhcCCccceeEEeeecCCCccEEeccCCC--CCceEeeeEEcCCCceeEEEEeeeEEECCeeeccCccceEEccCccce
Q 010525 237 LAKAGLIRNSFSMCFDKDDSGRIFFGDQGP--ATQQSTSFLASNGKYITYIIGVETCCIGSSCLKQTSFKAIVDSGSSFT 314 (508)
Q Consensus 237 L~~~gli~~~FSl~l~~~~~G~i~fG~~d~--~~~~~tp~v~~~~~~~~y~V~l~~i~Vg~~~~~~~~~~aiiDSGTs~t 314 (508)
|+++++|+++||+||.++..|.|+||+... ..+.|+|+...+. ..+|.|++++|+||++.+......+||||||+++
T Consensus 111 l~~~~~i~~~Fs~~l~~~~~g~l~~G~~~~~~g~i~ytpl~~~~~-~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t 189 (273)
T cd05475 111 LASQGIIKNVIGHCLSSNGGGFLFFGDDLVPSSGVTWTPMRRESQ-KKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYT 189 (273)
T ss_pred HHhcCCcCceEEEEccCCCCeEEEECCCCCCCCCeeecccccCCC-CCeEEEeEeEEEECCEECcCCCceEEEECCCceE
Confidence 999998999999999987779999996543 2367999865432 4799999999999999766556789999999999
Q ss_pred eccHHHHHHHHHHHHHhccCccccccccccccccccccCCCCCCCeEEEEecCC---CeEEEcCCeEEEEeeccccEEEE
Q 010525 315 FLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQN---NSFVVNNPVFVIYGTQVVTGFCL 391 (508)
Q Consensus 315 ~LP~~~~~~l~~~i~~~v~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~---~~~~i~~~~~~~~~~~~~~~~Cl 391 (508)
+||+++| +|+|+|+|.++ +++++++++|++.... +..|+
T Consensus 190 ~lp~~~y------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~--~~~Cl 231 (273)
T cd05475 190 YFNAQAY------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEK--GNVCL 231 (273)
T ss_pred EcCCccc------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCC--CCEEE
Confidence 9999876 58899999654 6899999999987543 56899
Q ss_pred EEEecC----CCceEEcceeeeeEEEEEeCCCCEEEEeeCCC
Q 010525 392 AIQPVD----GDIGTIGQNFMTGYRVVFDRENLKLGWSHSNC 429 (508)
Q Consensus 392 ~i~~~~----~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C 429 (508)
++.... .+.||||+.|||++|+|||++++||||++.+|
T Consensus 232 ~~~~~~~~~~~~~~ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 232 GILNGSEIGLGNTNIIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred EEecCCCcCCCceEEECceEEEeeEEEEECcCCEeCcccCCC
Confidence 987643 24799999999999999999999999999999
No 17
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1.7e-45 Score=386.67 Aligned_cols=290 Identities=20% Similarity=0.341 Sum_probs=229.0
Q ss_pred CceeeeecCCCceeEeccccCCceeEEecc-CCC--CCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCC
Q 010525 80 QFQMLFPSQGSKTMSLGNDFGCDLLWIPCD-CVR--CAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQ 156 (508)
Q Consensus 80 ~~~~l~~~~g~q~~~l~~DTGS~~~WV~c~-C~~--C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~ 156 (508)
++..+..|+|+|++.|++||||+++||+|. |.. |. .++.|||++|+|++...
T Consensus 140 Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C~------------~~~~yd~s~SsT~~~~~------------- 194 (453)
T PTZ00147 140 SYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGCE------------TKNLYDSSKSKTYEKDG------------- 194 (453)
T ss_pred EEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCccccc------------CCCccCCccCcceEECC-------------
Confidence 456788999999999999999999999998 864 43 24699999999999654
Q ss_pred CCCCCCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCC--CCCCCCCCeEEecCCCCCC--
Q 010525 157 NPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGG--YLDGVAPDGLIGLGLGEIS-- 232 (508)
Q Consensus 157 ~~~~~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~--~~~~~~~dGIlGLg~~~~S-- 232 (508)
+.|++.|++| ++.|.+++|+|+|++. ..+ ..|+|+.++.+. +......|||||||+++++
T Consensus 195 -----~~f~i~Yg~G--svsG~~~~DtVtiG~~--------~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~ 258 (453)
T PTZ00147 195 -----TKVEMNYVSG--TVSGFFSKDLVTIGNL--------SVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIG 258 (453)
T ss_pred -----CEEEEEeCCC--CEEEEEEEEEEEECCE--------EEE-EEEEEEEeccCcccccccccccceecccCCccccc
Confidence 8999999996 5899999999999875 223 579998876552 2233356999999998654
Q ss_pred ----hHHHHHhcCCc-cceeEEeeecC--CCccEEeccCCCCC----ceEeeeEEcCCCceeEEEEeeeEEECCeeeccC
Q 010525 233 ----VPSLLAKAGLI-RNSFSMCFDKD--DSGRIFFGDQGPAT----QQSTSFLASNGKYITYIIGVETCCIGSSCLKQT 301 (508)
Q Consensus 233 ----~~~qL~~~gli-~~~FSl~l~~~--~~G~i~fG~~d~~~----~~~tp~v~~~~~~~~y~V~l~~i~Vg~~~~~~~ 301 (508)
++.+|+++|+| +++||+||.+. ..|.|+||++|+.+ +.|+|+. ...+|.|+++ +.+|+... .
T Consensus 259 ~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~----~~~~W~V~l~-~~vg~~~~--~ 331 (453)
T PTZ00147 259 SVDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLN----HDLYWQVDLD-VHFGNVSS--E 331 (453)
T ss_pred cCCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcC----CCceEEEEEE-EEECCEec--C
Confidence 46789999999 78999999863 46999999999864 4577773 2478999998 57877543 4
Q ss_pred ccceEEccCccceeccHHHHHHHHHHHHHhccCccccccccccccccccccCCCCCCCeEEEEecCCCeEEEcCCeEEEE
Q 010525 302 SFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIY 381 (508)
Q Consensus 302 ~~~aiiDSGTs~t~LP~~~~~~l~~~i~~~v~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~i~~~~~~~~ 381 (508)
...+||||||+++++|+++++++.+++... ...........|+. ..+|+|+|+| ++..+++++++|+..
T Consensus 332 ~~~aIiDSGTsli~lP~~~~~ai~~~l~~~----~~~~~~~y~~~C~~------~~lP~~~f~f-~g~~~~L~p~~yi~~ 400 (453)
T PTZ00147 332 KANVIVDSGTSVITVPTEFLNKFVESLDVF----KVPFLPLYVTTCNN------TKLPTLEFRS-PNKVYTLEPEYYLQP 400 (453)
T ss_pred ceeEEECCCCchhcCCHHHHHHHHHHhCCe----ecCCCCeEEEeCCC------CCCCeEEEEE-CCEEEEECHHHheec
Confidence 568999999999999999999998886431 11111122345653 3689999999 678899999999875
Q ss_pred eeccccEEEE-EEEecC--CCceEEcceeeeeEEEEEeCCCCEEEEeeCC
Q 010525 382 GTQVVTGFCL-AIQPVD--GDIGTIGQNFMTGYRVVFDRENLKLGWSHSN 428 (508)
Q Consensus 382 ~~~~~~~~Cl-~i~~~~--~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~ 428 (508)
........|+ ++++.+ .+.||||+.|||++|+|||++++|||||+++
T Consensus 401 ~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 401 IEDIGSALCMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred cccCCCcEEEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 4332245686 687754 3579999999999999999999999999985
No 18
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=5.4e-45 Score=382.22 Aligned_cols=290 Identities=19% Similarity=0.312 Sum_probs=226.0
Q ss_pred CceeeeecCCCceeEeccccCCceeEEecc-CC--CCCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCC
Q 010525 80 QFQMLFPSQGSKTMSLGNDFGCDLLWIPCD-CV--RCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQ 156 (508)
Q Consensus 80 ~~~~l~~~~g~q~~~l~~DTGS~~~WV~c~-C~--~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~ 156 (508)
++..+..|+|+|++.|++||||+++||+|. |. .|.. ++.|||++|+|++...
T Consensus 139 Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C~~------------~~~yd~s~SsT~~~~~------------- 193 (450)
T PTZ00013 139 FYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGCSI------------KNLYDSSKSKSYEKDG------------- 193 (450)
T ss_pred EEEEEEECCCCeEEEEEEeCCCCceEEecccCCcccccc------------CCCccCccCcccccCC-------------
Confidence 456788999999999999999999999998 86 4543 4689999999999654
Q ss_pred CCCCCCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccC--CCCCCCCCCeEEecCCCCCC--
Q 010525 157 NPKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSG--GYLDGVAPDGLIGLGLGEIS-- 232 (508)
Q Consensus 157 ~~~~~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg--~~~~~~~~dGIlGLg~~~~S-- 232 (508)
|.|++.|++| ++.|.+++|+|+|++. .. ...|+++.+..+ ..+....+|||||||++.++
T Consensus 194 -----~~~~i~YG~G--sv~G~~~~Dtv~iG~~--------~~-~~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~ 257 (450)
T PTZ00013 194 -----TKVDITYGSG--TVKGFFSKDLVTLGHL--------SM-PYKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIG 257 (450)
T ss_pred -----cEEEEEECCc--eEEEEEEEEEEEECCE--------EE-ccEEEEEEeccccccceecccccceecccCCccccc
Confidence 8999999996 5899999999999876 22 357888876542 12233356999999998654
Q ss_pred ----hHHHHHhcCCc-cceeEEeeecC--CCccEEeccCCCCC----ceEeeeEEcCCCceeEEEEeeeEEECCeeeccC
Q 010525 233 ----VPSLLAKAGLI-RNSFSMCFDKD--DSGRIFFGDQGPAT----QQSTSFLASNGKYITYIIGVETCCIGSSCLKQT 301 (508)
Q Consensus 233 ----~~~qL~~~gli-~~~FSl~l~~~--~~G~i~fG~~d~~~----~~~tp~v~~~~~~~~y~V~l~~i~Vg~~~~~~~ 301 (508)
++.+|+++|+| +++||+||.+. ..|.|+|||+|+++ +.|+|+. ...+|.|+++ +.+|.... .
T Consensus 258 ~~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~----~~~yW~I~l~-v~~G~~~~--~ 330 (450)
T PTZ00013 258 SIDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLN----HDLYWQIDLD-VHFGKQTM--Q 330 (450)
T ss_pred cCCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcC----cCceEEEEEE-EEECceec--c
Confidence 57899999999 78999999864 47999999999865 4588874 2479999998 67775543 3
Q ss_pred ccceEEccCccceeccHHHHHHHHHHHHHhccCccccccccccccccccccCCCCCCCeEEEEecCCCeEEEcCCeEEEE
Q 010525 302 SFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIY 381 (508)
Q Consensus 302 ~~~aiiDSGTs~t~LP~~~~~~l~~~i~~~v~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~i~~~~~~~~ 381 (508)
...+||||||+++++|+++++++.+++.. ............|+. ..+|+|+|+| ++..+++++++|+..
T Consensus 331 ~~~aIlDSGTSli~lP~~~~~~i~~~l~~----~~~~~~~~y~~~C~~------~~lP~i~F~~-~g~~~~L~p~~Yi~~ 399 (450)
T PTZ00013 331 KANVIVDSGTTTITAPSEFLNKFFANLNV----IKVPFLPFYVTTCDN------KEMPTLEFKS-ANNTYTLEPEYYMNP 399 (450)
T ss_pred ccceEECCCCccccCCHHHHHHHHHHhCC----eecCCCCeEEeecCC------CCCCeEEEEE-CCEEEEECHHHheeh
Confidence 56799999999999999999988877532 111111122344543 3689999999 678999999999865
Q ss_pred eeccccEEEE-EEEecC--CCceEEcceeeeeEEEEEeCCCCEEEEeeCC
Q 010525 382 GTQVVTGFCL-AIQPVD--GDIGTIGQNFMTGYRVVFDRENLKLGWSHSN 428 (508)
Q Consensus 382 ~~~~~~~~Cl-~i~~~~--~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~ 428 (508)
.....+..|+ ++++.+ ++.||||++|||++|+|||++++|||||+++
T Consensus 400 ~~~~~~~~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 400 LLDVDDTLCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred hccCCCCeeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 3221245676 677643 3579999999999999999999999999874
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=5.9e-45 Score=360.83 Aligned_cols=246 Identities=28% Similarity=0.503 Sum_probs=211.2
Q ss_pred CceeeeecCCCceeEeccccCCceeEEeccCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCCC
Q 010525 80 QFQMLFPSQGSKTMSLGNDFGCDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPK 159 (508)
Q Consensus 80 ~~~~l~~~~g~q~~~l~~DTGS~~~WV~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~~~ 159 (508)
+...|..++|+|+++|++||||+++||+|
T Consensus 2 Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~--------------------------------------------------- 30 (265)
T cd05476 2 YLVTLSIGTPPQPFSLIVDTGSDLTWTQC--------------------------------------------------- 30 (265)
T ss_pred eEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------------------------------
Confidence 34567889999999999999999999975
Q ss_pred CCCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCCCCCCCCeEEecCCCCCChHHHHHh
Q 010525 160 QPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLLAK 239 (508)
Q Consensus 160 ~~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~~~~~~dGIlGLg~~~~S~~~qL~~ 239 (508)
|.|.+.|+|+ +.++|.+++|+|+|++.. ...+++.|||+..+++ +. ....+||||||+...|+++||+.
T Consensus 31 --~~~~~~Y~dg-~~~~G~~~~D~v~~g~~~------~~~~~~~Fg~~~~~~~-~~-~~~~~GIlGLg~~~~s~~~ql~~ 99 (265)
T cd05476 31 --CSYEYSYGDG-SSTSGVLATETFTFGDSS------VSVPNVAFGCGTDNEG-GS-FGGADGILGLGRGPLSLVSQLGS 99 (265)
T ss_pred --CceEeEeCCC-ceeeeeEEEEEEEecCCC------CccCCEEEEecccccC-Cc-cCCCCEEEECCCCcccHHHHhhc
Confidence 5799999984 789999999999998762 1346899999999876 33 33569999999999999999998
Q ss_pred cCCccceeEEeeec----CCCccEEeccCCC---CCceEeeeEEcCCCceeEEEEeeeEEECCeeec----------cCc
Q 010525 240 AGLIRNSFSMCFDK----DDSGRIFFGDQGP---ATQQSTSFLASNGKYITYIIGVETCCIGSSCLK----------QTS 302 (508)
Q Consensus 240 ~gli~~~FSl~l~~----~~~G~i~fG~~d~---~~~~~tp~v~~~~~~~~y~V~l~~i~Vg~~~~~----------~~~ 302 (508)
++ ++||+||.+ ...|+|+||++|. ..+.|+|++..+....+|.|+|++|+||++.+. ...
T Consensus 100 ~~---~~Fs~~l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~ 176 (265)
T cd05476 100 TG---NKFSYCLVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGS 176 (265)
T ss_pred cc---CeeEEEccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCC
Confidence 87 899999986 3479999999998 456799997654345789999999999999874 245
Q ss_pred cceEEccCccceeccHHHHHHHHHHHHHhccCccccccccccccccccccCCCCCCCeEEEEecCCCeEEEcCCeEEEEe
Q 010525 303 FKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYG 382 (508)
Q Consensus 303 ~~aiiDSGTs~t~LP~~~~~~l~~~i~~~v~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~i~~~~~~~~~ 382 (508)
..+||||||++++||+++| |.|+|+|.++..+.+++++|++..
T Consensus 177 ~~ai~DTGTs~~~lp~~~~-------------------------------------P~i~~~f~~~~~~~i~~~~y~~~~ 219 (265)
T cd05476 177 GGTIIDSGTTLTYLPDPAY-------------------------------------PDLTLHFDGGADLELPPENYFVDV 219 (265)
T ss_pred CcEEEeCCCcceEcCcccc-------------------------------------CCEEEEECCCCEEEeCcccEEEEC
Confidence 6799999999999999877 889999966889999999999854
Q ss_pred eccccEEEEEEEec-CCCceEEcceeeeeEEEEEeCCCCEEEEeeCCC
Q 010525 383 TQVVTGFCLAIQPV-DGDIGTIGQNFMTGYRVVFDRENLKLGWSHSNC 429 (508)
Q Consensus 383 ~~~~~~~Cl~i~~~-~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C 429 (508)
.. +.+|+++... ..+.||||++|||++|+|||++++|||||+.+|
T Consensus 220 ~~--~~~C~~~~~~~~~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 220 GE--GVVCLAILSSSSGGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CC--CCEEEEEecCCCCCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 32 6789998887 457899999999999999999999999999999
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=9.2e-45 Score=361.95 Aligned_cols=261 Identities=21% Similarity=0.280 Sum_probs=212.8
Q ss_pred eeeeecCCCceeEeccccCCceeEEecc-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCCCC
Q 010525 82 QMLFPSQGSKTMSLGNDFGCDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQ 160 (508)
Q Consensus 82 ~~l~~~~g~q~~~l~~DTGS~~~WV~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~~~~ 160 (508)
..|..|+|+|++.+++||||+++||+|. |..|..+ .+..|+|++|+|++.++
T Consensus 3 ~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~~~~~~----------~~~~y~~~~Sst~~~~~----------------- 55 (278)
T cd06097 3 TPVKIGTPPQTLNLDLDTGSSDLWVFSSETPAAQQG----------GHKLYDPSKSSTAKLLP----------------- 55 (278)
T ss_pred eeEEECCCCcEEEEEEeCCCCceeEeeCCCCchhhc----------cCCcCCCccCccceecC-----------------
Confidence 4678889999999999999999999998 9888643 24689999999999654
Q ss_pred CCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCCCCCCCCeEEecCCCCC---------
Q 010525 161 PCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEI--------- 231 (508)
Q Consensus 161 ~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~~~~~~dGIlGLg~~~~--------- 231 (508)
.|+|.+.|++| +.+.|.+++|+|+|++. ...++.|||++...+.++.....|||||||+..+
T Consensus 56 ~~~~~i~Y~~G-~~~~G~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~ 126 (278)
T cd06097 56 GATWSISYGDG-SSASGIVYTDTVSIGGV--------EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQK 126 (278)
T ss_pred CcEEEEEeCCC-CeEEEEEEEEEEEECCE--------EECCeEEEEEeecCccccccccccceeeeccccccccccCCCC
Confidence 48999999985 66899999999999875 3468999999988775545456799999999754
Q ss_pred ChHHHHHhcCCccceeEEeeecCCCccEEeccCCCCC----ceEeeeEEcCCCceeEEEEeeeEEECCeee-ccCccceE
Q 010525 232 SVPSLLAKAGLIRNSFSMCFDKDDSGRIFFGDQGPAT----QQSTSFLASNGKYITYIIGVETCCIGSSCL-KQTSFKAI 306 (508)
Q Consensus 232 S~~~qL~~~gli~~~FSl~l~~~~~G~i~fG~~d~~~----~~~tp~v~~~~~~~~y~V~l~~i~Vg~~~~-~~~~~~ai 306 (508)
++.++|.+++. +++||+||.+...|.|+||++|+.+ +.|+|++.. ..+|.|++++|.||++.. ......++
T Consensus 127 ~~~~~l~~~~~-~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~l~~~pi~~~---~~~w~v~l~~i~v~~~~~~~~~~~~~i 202 (278)
T cd06097 127 TFFENALSSLD-APLFTADLRKAAPGFYTFGYIDESKYKGEISWTPVDNS---SGFWQFTSTSYTVGGDAPWSRSGFSAI 202 (278)
T ss_pred CHHHHHHHhcc-CceEEEEecCCCCcEEEEeccChHHcCCceEEEEccCC---CcEEEEEEeeEEECCcceeecCCceEE
Confidence 34667887765 8999999997678999999999754 568887532 479999999999999843 34567899
Q ss_pred EccCccceeccHHHHHHHHHHHHHhccCccccccccccccccccccCCCCCCCeEEEEecCCCeEEEcCCeEEEEeeccc
Q 010525 307 VDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVV 386 (508)
Q Consensus 307 iDSGTs~t~LP~~~~~~l~~~i~~~v~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~i~~~~~~~~~~~~~ 386 (508)
|||||+++++|++++++|.+++.. ..... ...+|..+|... +|+|+|+|
T Consensus 203 iDSGTs~~~lP~~~~~~l~~~l~g----~~~~~----~~~~~~~~C~~~--~P~i~f~~--------------------- 251 (278)
T cd06097 203 ADTGTTLILLPDAIVEAYYSQVPG----AYYDS----EYGGWVFPCDTT--LPDLSFAV--------------------- 251 (278)
T ss_pred eecCCchhcCCHHHHHHHHHhCcC----CcccC----CCCEEEEECCCC--CCCEEEEE---------------------
Confidence 999999999999999998887521 11111 123466667542 89999998
Q ss_pred cEEEEEEEecCCCceEEcceeeeeEEEEEeCCCCEEEEee
Q 010525 387 TGFCLAIQPVDGDIGTIGQNFMTGYRVVFDRENLKLGWSH 426 (508)
Q Consensus 387 ~~~Cl~i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~ 426 (508)
.||||++|||++|+|||++|+|||||+
T Consensus 252 -------------~~ilGd~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 252 -------------FSILGDVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred -------------EEEEcchhhCceeEEEcCCCceeeecC
Confidence 599999999999999999999999995
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=8.4e-42 Score=343.21 Aligned_cols=265 Identities=23% Similarity=0.389 Sum_probs=215.7
Q ss_pred ceeeeecCCCceeEeccccCCceeEEeccCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCCCC
Q 010525 81 FQMLFPSQGSKTMSLGNDFGCDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQ 160 (508)
Q Consensus 81 ~~~l~~~~g~q~~~l~~DTGS~~~WV~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~~~~ 160 (508)
...+.+|+|+|++.+++||||+++||+
T Consensus 4 ~~~i~iGtp~q~~~v~~DTgS~~~wv~----------------------------------------------------- 30 (295)
T cd05474 4 SAELSVGTPPQKVTVLLDTGSSDLWVP----------------------------------------------------- 30 (295)
T ss_pred EEEEEECCCCcEEEEEEeCCCCcceee-----------------------------------------------------
Confidence 346788999999999999999999994
Q ss_pred CCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCCCCCCCCeEEecCCCCC---------
Q 010525 161 PCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEI--------- 231 (508)
Q Consensus 161 ~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~~~~~~dGIlGLg~~~~--------- 231 (508)
+|++.|++| +++.|.+++|+|+|++. ...++.|||+++.. ..+||||||+...
T Consensus 31 --~~~~~Y~~g-~~~~G~~~~D~v~~g~~--------~~~~~~fg~~~~~~-------~~~GilGLg~~~~~~~~~~~~~ 92 (295)
T cd05474 31 --DFSISYGDG-TSASGTWGTDTVSIGGA--------TVKNLQFAVANSTS-------SDVGVLGIGLPGNEATYGTGYT 92 (295)
T ss_pred --eeEEEeccC-CcEEEEEEEEEEEECCe--------EecceEEEEEecCC-------CCcceeeECCCCCcccccCCCc
Confidence 388999984 68999999999999876 34689999999842 3489999999876
Q ss_pred --ChHHHHHhcCCc-cceeEEeeecC--CCccEEeccCCCCC----ceEeeeEEcCC--CceeEEEEeeeEEECCeeec-
Q 010525 232 --SVPSLLAKAGLI-RNSFSMCFDKD--DSGRIFFGDQGPAT----QQSTSFLASNG--KYITYIIGVETCCIGSSCLK- 299 (508)
Q Consensus 232 --S~~~qL~~~gli-~~~FSl~l~~~--~~G~i~fG~~d~~~----~~~tp~v~~~~--~~~~y~V~l~~i~Vg~~~~~- 299 (508)
+++++|+++|+| +++||+||++. ..|.|+||++|..+ ..|+|++..+. ...+|.|++++|.||++.++
T Consensus 93 ~~s~~~~L~~~g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~ 172 (295)
T cd05474 93 YPNFPIALKKQGLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNT 172 (295)
T ss_pred CCCHHHHHHHCCcccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcc
Confidence 689999999999 79999999974 57999999999765 45888865432 23789999999999998753
Q ss_pred ---cCccceEEccCccceeccHHHHHHHHHHHHHhccCccccccccccccccccccCCCCCCCeEEEEecCCCeEEEcCC
Q 010525 300 ---QTSFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNP 376 (508)
Q Consensus 300 ---~~~~~aiiDSGTs~t~LP~~~~~~l~~~i~~~v~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~i~~~ 376 (508)
.....++|||||++++||+++|++|.+++.+..... .......|+.. .+ |.|+|+| ++.++.++++
T Consensus 173 ~~~~~~~~~iiDSGt~~~~lP~~~~~~l~~~~~~~~~~~----~~~~~~~C~~~-----~~-p~i~f~f-~g~~~~i~~~ 241 (295)
T cd05474 173 TLLSKNLPALLDSGTTLTYLPSDIVDAIAKQLGATYDSD----EGLYVVDCDAK-----DD-GSLTFNF-GGATISVPLS 241 (295)
T ss_pred cccCCCccEEECCCCccEeCCHHHHHHHHHHhCCEEcCC----CcEEEEeCCCC-----CC-CEEEEEE-CCeEEEEEHH
Confidence 345689999999999999999999999976543321 12234455543 34 9999999 6789999999
Q ss_pred eEEEEeec---cccEEEEEEEecCCCceEEcceeeeeEEEEEeCCCCEEEEeeC
Q 010525 377 VFVIYGTQ---VVTGFCLAIQPVDGDIGTIGQNFMTGYRVVFDRENLKLGWSHS 427 (508)
Q Consensus 377 ~~~~~~~~---~~~~~Cl~i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~ 427 (508)
+|++.... ..+.|++++++.+.+.||||++|||++|+|||++++|||||++
T Consensus 242 ~~~~~~~~~~~~~~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 242 DLVLPASTDDGGDGACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred HhEeccccCCCCCCCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 99887542 1244447898877678999999999999999999999999985
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=3.7e-43 Score=355.98 Aligned_cols=294 Identities=25% Similarity=0.471 Sum_probs=237.2
Q ss_pred ceeeeecCCCceeEeccccCCceeEEecc-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCCC
Q 010525 81 FQMLFPSQGSKTMSLGNDFGCDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPK 159 (508)
Q Consensus 81 ~~~l~~~~g~q~~~l~~DTGS~~~WV~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~~~ 159 (508)
...|..|+|+|+++|++||||+++||++. |..|... .....|++++|+|++...
T Consensus 3 ~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~~~~~~---------~~~~~y~~~~S~t~~~~~---------------- 57 (317)
T PF00026_consen 3 YINVTIGTPPQTFRVLIDTGSSDTWVPSSNCNSCSSC---------ASSGFYNPSKSSTFSNQG---------------- 57 (317)
T ss_dssp EEEEEETTTTEEEEEEEETTBSSEEEEBTTECSHTHH---------CTSC-BBGGGSTTEEEEE----------------
T ss_pred EEEEEECCCCeEEEEEEecccceeeeceecccccccc---------ccccccccccccccccce----------------
Confidence 45678889999999999999999999997 8776111 124699999999999766
Q ss_pred CCCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCCCCCCCCeEEecCCCC-------CC
Q 010525 160 QPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGE-------IS 232 (508)
Q Consensus 160 ~~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~~~~~~dGIlGLg~~~-------~S 232 (508)
+.+.+.|++| .++|.+++|+|+|++. ...++.||++....+........+||||||+.. .+
T Consensus 58 --~~~~~~y~~g--~~~G~~~~D~v~ig~~--------~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~ 125 (317)
T PF00026_consen 58 --KPFSISYGDG--SVSGNLVSDTVSIGGL--------TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPT 125 (317)
T ss_dssp --EEEEEEETTE--EEEEEEEEEEEEETTE--------EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-S
T ss_pred --eeeeeeccCc--ccccccccceEeeeec--------cccccceeccccccccccccccccccccccCCcccccccCCc
Confidence 7899999996 4999999999999886 446799999999765432333569999999752 46
Q ss_pred hHHHHHhcCCc-cceeEEeeecCC--CccEEeccCCCCCc----eEeeeEEcCCCceeEEEEeeeEEECCe-eeccCccc
Q 010525 233 VPSLLAKAGLI-RNSFSMCFDKDD--SGRIFFGDQGPATQ----QSTSFLASNGKYITYIIGVETCCIGSS-CLKQTSFK 304 (508)
Q Consensus 233 ~~~qL~~~gli-~~~FSl~l~~~~--~G~i~fG~~d~~~~----~~tp~v~~~~~~~~y~V~l~~i~Vg~~-~~~~~~~~ 304 (508)
++++|+++|+| +++||++|++.. .|.|+||++|+.++ .|+|++ ...+|.|.+++|.++++ ........
T Consensus 126 ~~~~l~~~g~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~----~~~~w~v~~~~i~i~~~~~~~~~~~~ 201 (317)
T PF00026_consen 126 FLDQLVQQGLISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLV----SSGYWSVPLDSISIGGESVFSSSGQQ 201 (317)
T ss_dssp HHHHHHHTTSSSSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBS----STTTTEEEEEEEEETTEEEEEEEEEE
T ss_pred ceecchhhccccccccceeeeecccccchheeeccccccccCceeccCcc----ccccccccccccccccccccccccee
Confidence 88999999999 899999999874 69999999998764 466664 35789999999999999 44445578
Q ss_pred eEEccCccceeccHHHHHHHHHHHHHhccCccccccccccccccccccCCCCCCCeEEEEecCCCeEEEcCCeEEEEeec
Q 010525 305 AIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQ 384 (508)
Q Consensus 305 aiiDSGTs~t~LP~~~~~~l~~~i~~~v~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~i~~~~~~~~~~~ 384 (508)
++|||||++++||++++++|++++...... .+|..+|.....+|.|+|+| ++.++.+++++|+.....
T Consensus 202 ~~~Dtgt~~i~lp~~~~~~i~~~l~~~~~~-----------~~~~~~c~~~~~~p~l~f~~-~~~~~~i~~~~~~~~~~~ 269 (317)
T PF00026_consen 202 AILDTGTSYIYLPRSIFDAIIKALGGSYSD-----------GVYSVPCNSTDSLPDLTFTF-GGVTFTIPPSDYIFKIED 269 (317)
T ss_dssp EEEETTBSSEEEEHHHHHHHHHHHTTEEEC-----------SEEEEETTGGGGSEEEEEEE-TTEEEEEEHHHHEEEESS
T ss_pred eecccccccccccchhhHHHHhhhcccccc-----------eeEEEecccccccceEEEee-CCEEEEecchHhcccccc
Confidence 999999999999999999999987543322 34556665556789999999 688999999999988766
Q ss_pred cccEEEE-EEEe----cCCCceEEcceeeeeEEEEEeCCCCEEEEeeC
Q 010525 385 VVTGFCL-AIQP----VDGDIGTIGQNFMTGYRVVFDRENLKLGWSHS 427 (508)
Q Consensus 385 ~~~~~Cl-~i~~----~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~ 427 (508)
.....|. +|.. ...+.+|||.+|||++|+|||.|++|||||++
T Consensus 270 ~~~~~C~~~i~~~~~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 270 GNGGYCYLGIQPMDSSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp TTSSEEEESEEEESSTTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred cccceeEeeeecccccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 4333665 6777 23568999999999999999999999999984
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=3.7e-41 Score=335.46 Aligned_cols=263 Identities=26% Similarity=0.460 Sum_probs=217.8
Q ss_pred eeeeecCCCceeEeccccCCceeEEecc-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCCCC
Q 010525 82 QMLFPSQGSKTMSLGNDFGCDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQ 160 (508)
Q Consensus 82 ~~l~~~~g~q~~~l~~DTGS~~~WV~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~~~~ 160 (508)
..+..|+++|++.|++||||+++||+|. |..|..+.. ....|++..|++++. .
T Consensus 3 ~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~~~~~~~~--------~~~~~~~~~s~~~~~------------------~ 56 (283)
T cd05471 3 GEITIGTPPQKFSVIFDTGSSLLWVPSSNCTSCSCQKH--------PRFKYDSSKSSTYKD------------------T 56 (283)
T ss_pred EEEEECCCCcEEEEEEeCCCCCEEEecCCCCccccccC--------CCCccCccCCceeec------------------C
Confidence 4577889999999999999999999998 988865431 111378887777764 3
Q ss_pred CCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCCCCCCCCeEEecCCCC------CChH
Q 010525 161 PCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGE------ISVP 234 (508)
Q Consensus 161 ~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~~~~~~dGIlGLg~~~------~S~~ 234 (508)
.|.|++.|++| ++.|.+++|+|+|++. ..+++.|||++...+.+.. ...+||||||+.. .+++
T Consensus 57 ~~~~~~~Y~~g--~~~g~~~~D~v~~~~~--------~~~~~~fg~~~~~~~~~~~-~~~~GilGLg~~~~~~~~~~s~~ 125 (283)
T cd05471 57 GCTFSITYGDG--SVTGGLGTDTVTIGGL--------TIPNQTFGCATSESGDFSS-SGFDGILGLGFPSLSVDGVPSFF 125 (283)
T ss_pred CCEEEEEECCC--eEEEEEEEeEEEECCE--------EEeceEEEEEeccCCcccc-cccceEeecCCcccccccCCCHH
Confidence 49999999986 7899999999999876 3578999999988763322 3568999999997 7899
Q ss_pred HHHHhcCCc-cceeEEeeecC----CCccEEeccCCCC----CceEeeeEEcCCCceeEEEEeeeEEECCe--eeccCcc
Q 010525 235 SLLAKAGLI-RNSFSMCFDKD----DSGRIFFGDQGPA----TQQSTSFLASNGKYITYIIGVETCCIGSS--CLKQTSF 303 (508)
Q Consensus 235 ~qL~~~gli-~~~FSl~l~~~----~~G~i~fG~~d~~----~~~~tp~v~~~~~~~~y~V~l~~i~Vg~~--~~~~~~~ 303 (508)
++|.++++| +++||+||.+. ..|.|+||++|.. ...|+|++.. ...+|.|.+++|.||++ .......
T Consensus 126 ~~l~~~~~i~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~~~~~~ 203 (283)
T cd05471 126 DQLKSQGLISSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSN--GPGYWQVPLDGISVGGKSVISSSGGG 203 (283)
T ss_pred HHHHHCCCCCCCEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCC--CCCEEEEEeCeEEECCceeeecCCCc
Confidence 999999998 89999999974 6899999999985 3568888653 24799999999999997 3444567
Q ss_pred ceEEccCccceeccHHHHHHHHHHHHHhccCccccccccccccccccccCCCCCCCeEEEEecCCCeEEEcCCeEEEEee
Q 010525 304 KAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTITSFEGYPWKCCYKSSSQRLPKLPSVKLMFPQNNSFVVNNPVFVIYGT 383 (508)
Q Consensus 304 ~aiiDSGTs~t~LP~~~~~~l~~~i~~~v~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~g~~~~~i~~~~~~~~~~ 383 (508)
.++|||||++++||+++|++|.+++...... ...|+...|.....+|.|+|+|
T Consensus 204 ~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~---------~~~~~~~~~~~~~~~p~i~f~f------------------ 256 (283)
T cd05471 204 GAIVDSGTSLIYLPSSVYDAILKALGAAVSS---------SDGGYGVDCSPCDTLPDITFTF------------------ 256 (283)
T ss_pred EEEEecCCCCEeCCHHHHHHHHHHhCCcccc---------cCCcEEEeCcccCcCCCEEEEE------------------
Confidence 8999999999999999999999997654432 2345556666667899999999
Q ss_pred ccccEEEEEEEecCCCceEEcceeeeeEEEEEeCCCCEEEEee
Q 010525 384 QVVTGFCLAIQPVDGDIGTIGQNFMTGYRVVFDRENLKLGWSH 426 (508)
Q Consensus 384 ~~~~~~Cl~i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~ 426 (508)
.+|||++|||++|++||+|++|||||+
T Consensus 257 ----------------~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 ----------------LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred ----------------EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 589999999999999999999999985
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.94 E-value=2.1e-27 Score=217.99 Aligned_cols=155 Identities=35% Similarity=0.636 Sum_probs=123.6
Q ss_pred eeeeecCCCceeEeccccCCceeEEeccCCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCC----CCCC
Q 010525 82 QMLFPSQGSKTMSLGNDFGCDLLWIPCDCVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGT----SCQN 157 (508)
Q Consensus 82 ~~l~~~~g~q~~~l~~DTGS~~~WV~c~C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~----~C~~ 157 (508)
..+..++|+|++.+++||||+++|++|. .+.|+|++|+||+.++|++++|.... .|..
T Consensus 3 ~~~~iGtP~~~~~lvvDtgs~l~W~~C~------------------~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~ 64 (164)
T PF14543_consen 3 VSVSIGTPPQPFSLVVDTGSDLTWVQCP------------------DPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCC 64 (164)
T ss_dssp EEEECTCTTEEEEEEEETT-SSEEEET----------------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTC
T ss_pred EEEEeCCCCceEEEEEECCCCceEEcCC------------------CcccCCccCCcccccCCCCcchhhcccccccCCC
Confidence 3567788999999999999999999981 37999999999999999999998532 4555
Q ss_pred CCCCCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCCCCCCCCeEEecCCCCCChHHHH
Q 010525 158 PKQPCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGLGEISVPSLL 237 (508)
Q Consensus 158 ~~~~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~~~~~~dGIlGLg~~~~S~~~qL 237 (508)
.+..|.|.+.|++ ++.++|.+++|+|+++...... ....++.|||++.+.|.+. ..+||||||++++|+++||
T Consensus 65 ~~~~C~y~~~y~~-~s~~~G~l~~D~~~~~~~~~~~---~~~~~~~FGC~~~~~g~~~---~~~GilGLg~~~~Sl~sQl 137 (164)
T PF14543_consen 65 SNNSCPYSQSYGD-GSSSSGFLASDTLTFGSSSGGS---NSVPDFIFGCATSNSGLFY---GADGILGLGRGPLSLPSQL 137 (164)
T ss_dssp ESSEEEEEEEETT-TEEEEEEEEEEEEEEEEESSSS---EEEEEEEEEEE-GGGTSST---TEEEEEE-SSSTTSHHHHH
T ss_pred CcCcccceeecCC-CccccCceEEEEEEecCCCCCC---ceeeeEEEEeeeccccCCc---CCCcccccCCCcccHHHHH
Confidence 5668999999999 5999999999999998874332 2457899999999997664 4589999999999999999
Q ss_pred HhcCCccceeEEeeec---CCCccEEecc
Q 010525 238 AKAGLIRNSFSMCFDK---DDSGRIFFGD 263 (508)
Q Consensus 238 ~~~gli~~~FSl~l~~---~~~G~i~fG~ 263 (508)
+++ ..++|||||.+ +..|.|+||+
T Consensus 138 ~~~--~~~~FSyCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 138 ASS--SGNKFSYCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp HHH----SEEEEEB-S-SSSSEEEEEECS
T ss_pred HHh--cCCeEEEECCCCCCCCCEEEEeCc
Confidence 988 67999999988 3579999996
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.91 E-value=1.4e-24 Score=198.83 Aligned_cols=142 Identities=27% Similarity=0.501 Sum_probs=115.3
Q ss_pred eEEEEeeeEEECCeeecc--C-------ccceEEccCccceeccHHHHHHHHHHHHHhccCccc---ccccccccccccc
Q 010525 283 TYIIGVETCCIGSSCLKQ--T-------SFKAIVDSGSSFTFLPKEVYETIAAEFDRQVNDTIT---SFEGYPWKCCYKS 350 (508)
Q Consensus 283 ~y~V~l~~i~Vg~~~~~~--~-------~~~aiiDSGTs~t~LP~~~~~~l~~~i~~~v~~~~~---~~~~~~~~~C~~~ 350 (508)
+|+|+|++|+||++++.. . ...+||||||++|+||+++|++|+++|.+++..... ......++.||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 599999999999999872 2 246999999999999999999999999998876642 2334678999998
Q ss_pred cc----CCCCCCCeEEEEecCCCeEEEcCCeEEEEeeccccEEEEEEEec---CCCceEEcceeeeeEEEEEeCCCCEEE
Q 010525 351 SS----QRLPKLPSVKLMFPQNNSFVVNNPVFVIYGTQVVTGFCLAIQPV---DGDIGTIGQNFMTGYRVVFDRENLKLG 423 (508)
Q Consensus 351 ~~----~~~~~~P~i~f~f~g~~~~~i~~~~~~~~~~~~~~~~Cl~i~~~---~~~~~IlG~~fl~~~yvVFD~e~~rIG 423 (508)
+. ..+..+|+|+|+|.||+.+++++++|++.... +.+|++|.++ +.+..|||..+|++++++||++++|||
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~--~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~ig 158 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSP--GVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIG 158 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECT--TEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccC--CCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEE
Confidence 87 46778999999999899999999999988764 7999999998 467899999999999999999999999
Q ss_pred Eee
Q 010525 424 WSH 426 (508)
Q Consensus 424 fa~ 426 (508)
|+|
T Consensus 159 F~~ 161 (161)
T PF14541_consen 159 FAP 161 (161)
T ss_dssp EEE
T ss_pred EeC
Confidence 986
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.81 E-value=1.3e-19 Score=154.61 Aligned_cols=106 Identities=29% Similarity=0.419 Sum_probs=88.7
Q ss_pred eeeecCCCceeEeccccCCceeEEecc-CCCCCCCccccccccCCCCCCC-CCCCCCCCccccCCCcCCCCCCCCCCCCC
Q 010525 83 MLFPSQGSKTMSLGNDFGCDLLWIPCD-CVRCAPLSASYYNSLDRDLNEY-SPSASSTSKHLSCSHRLCDLGTSCQNPKQ 160 (508)
Q Consensus 83 ~l~~~~g~q~~~l~~DTGS~~~WV~c~-C~~C~~~~~~~~~~~~~~~~~f-~ps~SsT~~~~~C~~~~C~~~~~C~~~~~ 160 (508)
.+..++|+|++.|++||||+++||+|. |..|..+. +..| +|++|+|++...
T Consensus 2 ~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~~~~~~~----------~~~~~~~~~sst~~~~~----------------- 54 (109)
T cd05470 2 EIGIGTPPQTFNVLLDTGSSNLWVPSVDCQSLAIYS----------HSSYDDPSASSTYSDNG----------------- 54 (109)
T ss_pred EEEeCCCCceEEEEEeCCCCCEEEeCCCCCCccccc----------ccccCCcCCCCCCCCCC-----------------
Confidence 467788999999999999999999998 98776443 2455 999999998654
Q ss_pred CCCeeeecCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCCCCCCCCeEEec
Q 010525 161 PCPYTMDYYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGL 226 (508)
Q Consensus 161 ~c~y~i~Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~~~~~~dGIlGL 226 (508)
|.|.+.|++| ++.|.+++|+|+|++. ..+++.|||++...+.+......+|||||
T Consensus 55 -~~~~~~Y~~g--~~~g~~~~D~v~ig~~--------~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 55 -CTFSITYGTG--SLSGGLSTDTVSIGDI--------EVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred -cEEEEEeCCC--eEEEEEEEEEEEECCE--------EECCEEEEEEEecCCccccccccccccCC
Confidence 9999999996 6789999999999876 35689999999998875554467999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=96.20 E-value=0.01 Score=48.44 Aligned_cols=84 Identities=15% Similarity=0.069 Sum_probs=52.8
Q ss_pred CCceeEeccccCCceeEEecc-CCCCCCCccccccccCCCCCCCCCCCCCCCccccCCCcCCCCCCCCCCCCCCCCeeee
Q 010525 89 GSKTMSLGNDFGCDLLWIPCD-CVRCAPLSASYYNSLDRDLNEYSPSASSTSKHLSCSHRLCDLGTSCQNPKQPCPYTMD 167 (508)
Q Consensus 89 g~q~~~l~~DTGS~~~WV~c~-C~~C~~~~~~~~~~~~~~~~~f~ps~SsT~~~~~C~~~~C~~~~~C~~~~~~c~y~i~ 167 (508)
+++++.+.+|||++.+|+... ...+. . + . .....+.+.
T Consensus 10 ~~~~~~~llDTGa~~s~i~~~~~~~l~---------------~--~-----~-------------------~~~~~~~~~ 48 (96)
T cd05483 10 NGQPVRFLLDTGASTTVISEELAERLG---------------L--P-----L-------------------TLGGKVTVQ 48 (96)
T ss_pred CCEEEEEEEECCCCcEEcCHHHHHHcC---------------C--C-----c-------------------cCCCcEEEE
Confidence 468999999999999999864 22221 0 0 0 012456677
Q ss_pred cCCCCceeeeEEEEEEEEeccCCCCccccccccceEEEeEEeccCCCCCCCCCCeEEecCC
Q 010525 168 YYTENTSSSGLLVEDILHLISGGDNALKNSVQASVIIGCGMKQSGGYLDGVAPDGLIGLGL 228 (508)
Q Consensus 168 Y~dg~s~~~G~l~~D~v~l~~~~~~~~~~~~~~~~~fg~~~~~sg~~~~~~~~dGIlGLg~ 228 (508)
+.+| .........+.|+|++. ...++.+........ ..|||+|+.+
T Consensus 49 ~~~G-~~~~~~~~~~~i~ig~~--------~~~~~~~~v~d~~~~------~~~gIlG~d~ 94 (96)
T cd05483 49 TANG-RVRAARVRLDSLQIGGI--------TLRNVPAVVLPGDAL------GVDGLLGMDF 94 (96)
T ss_pred ecCC-CccceEEEcceEEECCc--------EEeccEEEEeCCccc------CCceEeChHH
Confidence 7764 45555666888999876 334556655543321 3589999853
No 28
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=94.92 E-value=0.22 Score=43.25 Aligned_cols=27 Identities=19% Similarity=0.081 Sum_probs=23.4
Q ss_pred CCceEEcceeeeeEEEEEeCCCCEEEE
Q 010525 398 GDIGTIGQNFMTGYRVVFDRENLKLGW 424 (508)
Q Consensus 398 ~~~~IlG~~fl~~~yvVFD~e~~rIGf 424 (508)
....|||.+||+.+..+.|.++++|-+
T Consensus 98 ~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 98 DVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred CcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 345899999999999999999998753
No 29
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=94.81 E-value=0.43 Score=41.30 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=28.1
Q ss_pred ceeEEEEeeeEEECCeeeccCccceEEccCccceeccHHHHHHH
Q 010525 281 YITYIIGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 324 (508)
Q Consensus 281 ~~~y~V~l~~i~Vg~~~~~~~~~~aiiDSGTs~t~LP~~~~~~l 324 (508)
..+|.++ +.|||+.+ .+++|||.+.+.++.+..+++
T Consensus 9 ~g~~~v~---~~InG~~~-----~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 9 DGHFYAT---GRVNGRNV-----RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCeEEEE---EEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 3667664 67888744 599999999999999977663
No 30
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=91.35 E-value=0.29 Score=43.28 Aligned_cols=28 Identities=11% Similarity=0.192 Sum_probs=25.5
Q ss_pred ceEEcceeeeeEEEEEeCCCCEEEEeeC
Q 010525 400 IGTIGQNFMTGYRVVFDRENLKLGWSHS 427 (508)
Q Consensus 400 ~~IlG~~fl~~~yvVFD~e~~rIGfa~~ 427 (508)
..|||.++|+.|..+-|..+++|-|...
T Consensus 105 DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 105 DVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred eeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 4899999999999999999999998753
No 31
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=87.78 E-value=2.6 Score=35.56 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=20.8
Q ss_pred CceEEcceeeeeEEEEEeCCCCEE
Q 010525 399 DIGTIGQNFMTGYRVVFDRENLKL 422 (508)
Q Consensus 399 ~~~IlG~~fl~~~yvVFD~e~~rI 422 (508)
+..+||..||+.+-++.|..++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 468999999999999999987753
No 32
>PF13650 Asp_protease_2: Aspartyl protease
Probab=87.54 E-value=2.9 Score=33.11 Aligned_cols=21 Identities=19% Similarity=0.180 Sum_probs=17.3
Q ss_pred CCceeEeccccCCceeEEecc
Q 010525 89 GSKTMSLGNDFGCDLLWIPCD 109 (508)
Q Consensus 89 g~q~~~l~~DTGS~~~WV~c~ 109 (508)
.++++++++|||++.+.+..+
T Consensus 6 ng~~~~~liDTGa~~~~i~~~ 26 (90)
T PF13650_consen 6 NGKPVRFLIDTGASISVISRS 26 (90)
T ss_pred CCEEEEEEEcCCCCcEEECHH
Confidence 357889999999999888764
No 33
>PF13650 Asp_protease_2: Aspartyl protease
Probab=83.20 E-value=1.5 Score=34.81 Aligned_cols=29 Identities=10% Similarity=0.400 Sum_probs=23.8
Q ss_pred EEECCeeeccCccceEEccCccceeccHHHHHHH
Q 010525 291 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 324 (508)
Q Consensus 291 i~Vg~~~~~~~~~~aiiDSGTs~t~LP~~~~~~l 324 (508)
+.|||+.+ .++||||.+.+.+.+++++++
T Consensus 3 v~vng~~~-----~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-----RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-----EEEEcCCCCcEEECHHHHHHc
Confidence 56788654 499999999999999977764
No 34
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=80.07 E-value=8.9 Score=34.79 Aligned_cols=22 Identities=32% Similarity=0.649 Sum_probs=17.7
Q ss_pred cceEEccCccceeccHHHHHHH
Q 010525 303 FKAIVDSGSSFTFLPKEVYETI 324 (508)
Q Consensus 303 ~~aiiDSGTs~t~LP~~~~~~l 324 (508)
..++||||+...+.-.+..+.|
T Consensus 46 i~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 46 IKVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred EEEEEeCCCccceeehhhHHhh
Confidence 3599999999999888866654
No 35
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=79.84 E-value=2.8 Score=32.52 Aligned_cols=30 Identities=27% Similarity=0.581 Sum_probs=24.8
Q ss_pred eEEECCeeeccCccceEEccCccceeccHHHHHHH
Q 010525 290 TCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 324 (508)
Q Consensus 290 ~i~Vg~~~~~~~~~~aiiDSGTs~t~LP~~~~~~l 324 (508)
.+.|+++.+. +++|||.+..++++...+.+
T Consensus 12 ~~~I~g~~~~-----alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQVK-----ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEEE-----EEEeCCCcceecCHHHHHHh
Confidence 3667776654 99999999999999988775
No 36
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=78.91 E-value=2.9 Score=33.88 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=25.5
Q ss_pred eEEECCeeeccCccceEEccCccceeccHHHHHHH
Q 010525 290 TCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 324 (508)
Q Consensus 290 ~i~Vg~~~~~~~~~~aiiDSGTs~t~LP~~~~~~l 324 (508)
.+.|||+.+. ..+|||.+.+.++++.+.++
T Consensus 4 ~~~Ing~~i~-----~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK-----FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE-----EEEcCCcceEEeCHHHHHHh
Confidence 4678887765 88999999999999988764
No 37
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=74.87 E-value=12 Score=32.32 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=20.3
Q ss_pred CCceeEeccccCCceeEEecc-CCCC
Q 010525 89 GSKTMSLGNDFGCDLLWIPCD-CVRC 113 (508)
Q Consensus 89 g~q~~~l~~DTGS~~~WV~c~-C~~C 113 (508)
+++++.+++|||++..++.-. +..+
T Consensus 24 ng~~~~~LvDTGAs~s~Is~~~a~~l 49 (124)
T cd05479 24 NGVPVKAFVDSGAQMTIMSKACAEKC 49 (124)
T ss_pred CCEEEEEEEeCCCceEEeCHHHHHHc
Confidence 577889999999999999876 4443
No 38
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=74.83 E-value=4.9 Score=32.21 Aligned_cols=30 Identities=23% Similarity=0.430 Sum_probs=23.6
Q ss_pred eEEECCeeeccCccceEEccCccceeccHHHHHHH
Q 010525 290 TCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 324 (508)
Q Consensus 290 ~i~Vg~~~~~~~~~~aiiDSGTs~t~LP~~~~~~l 324 (508)
.+.||++.+ .++||||++.++++.+..+.+
T Consensus 6 ~v~i~~~~~-----~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV-----RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 467777554 499999999999999876654
No 39
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=68.21 E-value=11 Score=30.68 Aligned_cols=21 Identities=24% Similarity=0.567 Sum_probs=16.8
Q ss_pred CccceEEccCccceeccHHHH
Q 010525 301 TSFKAIVDSGSSFTFLPKEVY 321 (508)
Q Consensus 301 ~~~~aiiDSGTs~t~LP~~~~ 321 (508)
+....+||||.....+|....
T Consensus 8 s~~~fLVDTGA~vSviP~~~~ 28 (89)
T cd06094 8 SGLRFLVDTGAAVSVLPASST 28 (89)
T ss_pred CCcEEEEeCCCceEeeccccc
Confidence 345689999999999998643
No 40
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=66.88 E-value=6.8 Score=31.39 Aligned_cols=29 Identities=14% Similarity=0.238 Sum_probs=23.8
Q ss_pred EEECCeeeccCccceEEccCccceeccHHHHHHH
Q 010525 291 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 324 (508)
Q Consensus 291 i~Vg~~~~~~~~~~aiiDSGTs~t~LP~~~~~~l 324 (508)
+.|||+.+. .++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~~-----fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-----FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-----EEEECCCCeEEECHHHhhhc
Confidence 567776554 89999999999999987764
No 41
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=65.25 E-value=18 Score=31.11 Aligned_cols=21 Identities=10% Similarity=0.131 Sum_probs=17.9
Q ss_pred CCceeEeccccCCceeEEecc
Q 010525 89 GSKTMSLGNDFGCDLLWIPCD 109 (508)
Q Consensus 89 g~q~~~l~~DTGS~~~WV~c~ 109 (508)
.++++.+++|||++.+-++..
T Consensus 19 nG~~~~flVDTGAs~t~is~~ 39 (121)
T TIGR02281 19 NGRNVRFLVDTGATSVALNEE 39 (121)
T ss_pred CCEEEEEEEECCCCcEEcCHH
Confidence 457999999999999988764
No 42
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=59.71 E-value=7.4 Score=31.83 Aligned_cols=26 Identities=23% Similarity=0.443 Sum_probs=20.5
Q ss_pred eEEECCeeeccCccceEEccCccceeccHHH
Q 010525 290 TCCIGSSCLKQTSFKAIVDSGSSFTFLPKEV 320 (508)
Q Consensus 290 ~i~Vg~~~~~~~~~~aiiDSGTs~t~LP~~~ 320 (508)
.|.++|+.+ .++||||...++++++.
T Consensus 9 ~v~i~g~~i-----~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 9 TVKINGKKI-----KALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEETTEEE-----EEEEETTBSSEEESSGG
T ss_pred EEeECCEEE-----EEEEecCCCcceecccc
Confidence 456677655 49999999999999863
No 43
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=56.82 E-value=69 Score=32.84 Aligned_cols=39 Identities=8% Similarity=0.057 Sum_probs=32.9
Q ss_pred EEEEecCCCceEEcceeeeeEEEEEeCCCCEEEEeeCCC
Q 010525 391 LAIQPVDGDIGTIGQNFMTGYRVVFDRENLKLGWSHSNC 429 (508)
Q Consensus 391 l~i~~~~~~~~IlG~~fl~~~yvVFD~e~~rIGfa~~~C 429 (508)
+.|....+-...||-.+||++--.-|++++++-++...-
T Consensus 310 ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~~t 348 (380)
T KOG0012|consen 310 FTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGNTET 348 (380)
T ss_pred eEEecCCCcchhhhHHHHHhccceeecccCeEEecCCCc
Confidence 566666555689999999999999999999999987765
No 44
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=53.46 E-value=15 Score=30.07 Aligned_cols=31 Identities=23% Similarity=0.355 Sum_probs=23.5
Q ss_pred EEECCeeeccCccceEEccCccceeccHHHHHHHH
Q 010525 291 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETIA 325 (508)
Q Consensus 291 i~Vg~~~~~~~~~~aiiDSGTs~t~LP~~~~~~l~ 325 (508)
+.++++ ....+.+|||.+...+|...|+.+.
T Consensus 3 ~~i~g~----~~v~~~vDtGA~vnllp~~~~~~l~ 33 (93)
T cd05481 3 MKINGK----QSVKFQLDTGATCNVLPLRWLKSLT 33 (93)
T ss_pred eEeCCc----eeEEEEEecCCEEEeccHHHHhhhc
Confidence 556663 2235889999999999999888753
No 45
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=52.52 E-value=9.3 Score=30.82 Aligned_cols=21 Identities=19% Similarity=0.235 Sum_probs=18.0
Q ss_pred CCceeEeccccCCceeEEecc
Q 010525 89 GSKTMSLGNDFGCDLLWIPCD 109 (508)
Q Consensus 89 g~q~~~l~~DTGS~~~WV~c~ 109 (508)
.++++.+.+||||+..++.-+
T Consensus 8 ng~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 8 NGKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CCEEEEEEEcCCcceEEeCHH
Confidence 467888999999999999764
No 46
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=52.04 E-value=13 Score=35.08 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=20.5
Q ss_pred CceEEcceeeeeEEEEEeCCCCEEEEeeC
Q 010525 399 DIGTIGQNFMTGYRVVFDRENLKLGWSHS 427 (508)
Q Consensus 399 ~~~IlG~~fl~~~yvVFD~e~~rIGfa~~ 427 (508)
-..|||.||+|.|+=-.+.+ .+|-|-..
T Consensus 91 ~d~IlG~NF~r~y~Pfiq~~-~~I~f~~~ 118 (201)
T PF02160_consen 91 IDIILGNNFLRLYEPFIQTE-DRIQFHKK 118 (201)
T ss_pred CCEEecchHHHhcCCcEEEc-cEEEEEeC
Confidence 45899999999887665555 46777653
No 47
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=49.96 E-value=30 Score=32.67 Aligned_cols=36 Identities=14% Similarity=0.129 Sum_probs=29.6
Q ss_pred ceeEEEEeeeEEECCeeeccCccceEEccCccceeccHHHHHHH
Q 010525 281 YITYIIGVETCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 324 (508)
Q Consensus 281 ~~~y~V~l~~i~Vg~~~~~~~~~~aiiDSGTs~t~LP~~~~~~l 324 (508)
..||.++ ..|||+.+. .++|||.|-..|+++...++
T Consensus 103 ~GHF~a~---~~VNGk~v~-----fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 103 DGHFEAN---GRVNGKKVD-----FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCcEEEE---EEECCEEEE-----EEEecCcceeecCHHHHHHh
Confidence 4778775 789998876 89999999999999876653
No 48
>cd05480 NRIP_C NRIP_C; putative nuclear receptor interacting protein. Proteins in this family have been described as probable nuclear receptor interacting proteins. The C-terminal domain of this family is homologous to the retroviral aspartyl protease domain. The domain is structurally related to one lobe of the pepsin molecule. The conserved active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=48.96 E-value=1.2e+02 Score=25.29 Aligned_cols=29 Identities=10% Similarity=0.153 Sum_probs=22.5
Q ss_pred EEEEecCCCceEEcceeeeeEEEEEeCCC
Q 010525 391 LAIQPVDGDIGTIGQNFMTGYRVVFDREN 419 (508)
Q Consensus 391 l~i~~~~~~~~IlG~~fl~~~yvVFD~e~ 419 (508)
+.+....+-..+||..+|+++--.-|+++
T Consensus 75 ftVld~~~~d~llGLdmLkrhqc~IdL~k 103 (103)
T cd05480 75 AQVVDDNEKNFSLGLQTLKSLKCVINLEK 103 (103)
T ss_pred EEEEcCCCcceEeeHHHHhhcceeeeccC
Confidence 45555544568999999999999988874
No 49
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=45.76 E-value=14 Score=31.83 Aligned_cols=20 Identities=30% Similarity=0.695 Sum_probs=17.7
Q ss_pred eEEccCcc-ceeccHHHHHHH
Q 010525 305 AIVDSGSS-FTFLPKEVYETI 324 (508)
Q Consensus 305 aiiDSGTs-~t~LP~~~~~~l 324 (508)
.+||||.+ ++.+|.++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 48999999 999999988874
No 50
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=44.85 E-value=24 Score=30.62 Aligned_cols=30 Identities=33% Similarity=0.481 Sum_probs=23.3
Q ss_pred eEEECCeeeccCccceEEccCccceeccHHHHHHH
Q 010525 290 TCCIGSSCLKQTSFKAIVDSGSSFTFLPKEVYETI 324 (508)
Q Consensus 290 ~i~Vg~~~~~~~~~~aiiDSGTs~t~LP~~~~~~l 324 (508)
.+.+||+.+. |+||||+-.+.++....+++
T Consensus 28 ~~~ing~~vk-----A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK-----AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE-----EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE-----EEEeCCCCccccCHHHHHHc
Confidence 4678888775 99999999999999987773
No 51
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=36.85 E-value=27 Score=28.71 Aligned_cols=27 Identities=30% Similarity=0.548 Sum_probs=20.0
Q ss_pred EEECCeeeccCccceEEccCccceeccHHH
Q 010525 291 CCIGSSCLKQTSFKAIVDSGSSFTFLPKEV 320 (508)
Q Consensus 291 i~Vg~~~~~~~~~~aiiDSGTs~t~LP~~~ 320 (508)
|.||.- +..+.++||||++.++++..-
T Consensus 3 i~vGtP---~q~~~~~~DTGSs~~Wv~~~~ 29 (109)
T cd05470 3 IGIGTP---PQTFNVLLDTGSSNLWVPSVD 29 (109)
T ss_pred EEeCCC---CceEEEEEeCCCCCEEEeCCC
Confidence 556652 245679999999999998753
No 52
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=36.13 E-value=29 Score=28.25 Aligned_cols=21 Identities=24% Similarity=0.196 Sum_probs=18.0
Q ss_pred CCceeEeccccCCceeEEecc
Q 010525 89 GSKTMSLGNDFGCDLLWIPCD 109 (508)
Q Consensus 89 g~q~~~l~~DTGS~~~WV~c~ 109 (508)
.++++...+||||+.+-++..
T Consensus 13 ~g~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 13 NGKKIKALLDTGADVSIISEK 33 (100)
T ss_dssp TTEEEEEEEETTBSSEEESSG
T ss_pred CCEEEEEEEecCCCcceeccc
Confidence 456888999999999999865
No 53
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=30.29 E-value=35 Score=27.66 Aligned_cols=20 Identities=25% Similarity=0.106 Sum_probs=17.3
Q ss_pred CCceeEeccccCCceeEEec
Q 010525 89 GSKTMSLGNDFGCDLLWIPC 108 (508)
Q Consensus 89 g~q~~~l~~DTGS~~~WV~c 108 (508)
++|.+...+|||.|++-+.-
T Consensus 6 ~g~~~~~llDTGAd~Tvi~~ 25 (87)
T cd05482 6 NGKLFEGLLDTGADVSIIAE 25 (87)
T ss_pred CCEEEEEEEccCCCCeEEcc
Confidence 46888999999999999964
Done!