BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010531
(508 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl
Acetyltransferase (E2)
Length = 239
Score = 140 bits (352), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 72/158 (45%), Positives = 102/158 (64%), Gaps = 8/158 (5%)
Query: 301 PAKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQ 360
P AP P + DIP S IR++ A RL+ SKQTIPHYYL++D+ + ++ +R +
Sbjct: 2 PGMAP------VPTGVFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKE 55
Query: 361 LNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGL 420
LN I E + +ISVND +IKA+ALA KVP NSSW D IRQ V+++VAV T GL
Sbjct: 56 LNKILEGRS--KISVNDFIIKASALACLKVPEANSSWMDTVIRQNHVVDVSVAVSTPAGL 113
Query: 421 YVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYE 458
P++ +A KG+ TIA +V LA KA++ L+P +++
Sbjct: 114 ITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQ 151
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|J Chain J, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 428
Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 104/344 (30%), Positives = 164/344 (47%), Gaps = 20/344 (5%)
Query: 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 179
E +P + + EG I +W K GD+V+ +VLCEV+ DKA VE+ +G + +I+ +
Sbjct: 4 EFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPE 63
Query: 180 GSKEIKVGEVIAITVEEEEDIPKFKDYSPSVSDAGXXXXXXXXXXXXXXXXXXXXXISTX 239
G+ VG+ + IT+ D P +++ ++ G +
Sbjct: 64 GTVA-TVGQTL-ITL----DAPGYEN----MTFKGQEQEEAKKEEKTETVSKEEKVDAVA 113
Query: 240 XXXXXXXXXXXXXDRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGKE 299
R+ A P R A E V + ++GTG NG ++K DI+ +LA K
Sbjct: 114 PNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAGGAKP 173
Query: 300 VPAKAPKGKDVAAPALDYVD--IPHSQ-----IRKITASRLLFSKQTIPHYYLTVDICVD 352
PA A + AA + P ++ IR+ A ++ SK T PH L + V
Sbjct: 174 APAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVT 233
Query: 353 NLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEY--IRQFKNVNI 410
L+ R + +I A G +++ V+KA ALR+ P N+S DE I Q NI
Sbjct: 234 KLVAHRKKFKAIA-AEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNI 292
Query: 411 NVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKP 454
+A T+ GL VPVI+ AD+K + +A+E+ +LA+KA+D L P
Sbjct: 293 GIAADTDRGLLVPVIKHADRKPIFALAQEINELAEKARDGKLTP 336
>pdb|1ZY8|K Chain K, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|L Chain L, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|M Chain M, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|N Chain N, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex.
pdb|1ZY8|O Chain O, The Crystal Structure Of Dihydrolipoamide Dehydrogenase
And Dihydrolipoamide Dehydrogenase-Binding Protein
(Didomain) Subcomplex Of Human Pyruvate Dehydrogenase
Complex
Length = 229
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 71/174 (40%), Positives = 91/174 (52%), Gaps = 21/174 (12%)
Query: 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 179
+I MPSLSPTM+EGNI +WLKKEG+ VS G+ LCE+ETDKA V ++ ++G LAKIV +
Sbjct: 5 KILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEE 64
Query: 180 GSKEIKVGEVIAITVEEEED-----IPKFKDYSPSVSDAGXXXXXXXXXXXXXXXXXXXX 234
GSK I++G +I + VEE ED IPK P VS
Sbjct: 65 GSKNIRLGSLIGLIVEEGEDWKHVEIPKDVGPPPPVSKP------------SEPRPSPEP 112
Query: 235 XISTXXXXXXXXXXXXXXDRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKAD 288
IS R SP ARN+ E+H++ S TGP G+ K D
Sbjct: 113 QISIPVKKEHIPGTL----RFRLSPAARNILEKHSLDASQGTATGPRGIFTKED 162
>pdb|1Y8N|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8O|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|1Y8P|B Chain B, Crystal Structure Of The Pdk3-L2 Complex
pdb|2Q8I|B Chain B, Pyruvate Dehydrogenase Kinase Isoform 3 In Complex With
Antitumor Drug Radicicol
pdb|2PNR|C Chain C, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
pdb|2PNR|G Chain G, Crystal Structure Of The Asymmetric Pdk3-L2 Complex
Length = 128
Score = 108 bits (269), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/97 (49%), Positives = 69/97 (71%)
Query: 113 SGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYL 172
S PPH ++ +P+LSPTM G + RW KK G+K+S G++L E+ETDKAT+ E EEGYL
Sbjct: 22 SSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYL 81
Query: 173 AKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYSPS 209
AKI+ +G++++ +G + I VE+E DI F DY P+
Sbjct: 82 AKILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPT 118
>pdb|1FYC|A Chain A, Inner Lipoyl Domain From Human Pyruvate Dehydrogenase
(Pdh) Complex, Nmr, 1 Structure
Length = 106
Score = 107 bits (266), Expect = 2e-23, Method: Composition-based stats.
Identities = 48/99 (48%), Positives = 70/99 (70%)
Query: 111 SDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEG 170
S+ PPH ++ +P+LSPTM G + RW KK G+K+S G++L E+ETDKAT+ E EEG
Sbjct: 2 SNMSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEG 61
Query: 171 YLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYSPS 209
YLAKI+ +G++++ +G + I VE+E DI F DY P+
Sbjct: 62 YLAKILVPEGTRDVPLGTPLCIIVEKEADISAFADYRPT 100
>pdb|2DNE|A Chain A, Solution Structure Of Rsgi Ruh-058, A Lipoyl Domain Of
Human 2-Oxoacid Dehydrogenase
Length = 108
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 53/100 (53%), Positives = 74/100 (74%), Gaps = 4/100 (4%)
Query: 108 GFSSDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECM 167
G S SG Q++ +PSLSPTMQ G IARW KKEGDK++ G+++ EVETDKATV E +
Sbjct: 1 GSSGSSG----QKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESL 56
Query: 168 EEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYS 207
EE Y+AKI+ +G++++ +G +I ITV + EDI FK+Y+
Sbjct: 57 EECYMAKILVAEGTRDVPIGAIICITVGKPEDIEAFKNYT 96
>pdb|2DNC|A Chain A, Solution Structure Of Rsgi Ruh-054, A Lipoyl Domain From
Human 2-Oxoacid Dehydrogenase
Length = 98
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/92 (56%), Positives = 68/92 (73%), Gaps = 4/92 (4%)
Query: 108 GFSSDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECM 167
G S SG+ +I MPSLSPTM+EGNI +WLKKEG+ VS G+ LCE+ETDKA V ++
Sbjct: 1 GSSGSSGI----KILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDAS 56
Query: 168 EEGYLAKIVKGDGSKEIKVGEVIAITVEEEED 199
++G LAKIV +GSK I++G +I + VEE ED
Sbjct: 57 DDGILAKIVVEEGSKNIRLGSLIGLIVEEGED 88
>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|B Chain B, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
pdb|3MAE|C Chain C, Crystal Structure Of Probable Dihydrolipamide
Acetyltransferase From Listeria Monocytogenes 4b F2365
Length = 256
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 51/140 (36%), Positives = 83/140 (59%)
Query: 319 DIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDL 378
+IP + +RK A + SKQ IPH ++ V++ L+ RN + + G ++
Sbjct: 20 EIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAF 79
Query: 379 VIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAE 438
IKA A AL++ P+ NS+WA + I + N+NI++A+ + LYVPVI++AD+K + IA
Sbjct: 80 FIKAVAQALKEFPQLNSTWAGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAR 139
Query: 439 EVRQLAQKAKDNSLKPQDYE 458
E+ +LA KA++ L D E
Sbjct: 140 EISELAGKARNGKLSQADME 159
>pdb|3CRK|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRK|D Chain D, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|C Chain C, Crystal Structure Of The Pdhk2-L2 Complex.
pdb|3CRL|D Chain D, Crystal Structure Of The Pdhk2-L2 Complex
Length = 87
Score = 94.7 bits (234), Expect = 9e-20, Method: Composition-based stats.
Identities = 42/85 (49%), Positives = 62/85 (72%)
Query: 116 PPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKI 175
PPH ++ +P+LSPTM G + RW KK G+K+S G++L E+ETD AT+ E EEGYLAKI
Sbjct: 3 PPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKI 62
Query: 176 VKGDGSKEIKVGEVIAITVEEEEDI 200
+ +G++++ +G + I VE+E DI
Sbjct: 63 LVPEGTRDVPLGTPLCIIVEKEADI 87
>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|B Chain B, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|C Chain C, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|D Chain D, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
pdb|1B5S|E Chain E, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic
Domain (Residues 184-425) From Bacillus
Stearothermophilus
Length = 242
Score = 84.0 bits (206), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 77/138 (55%), Gaps = 3/138 (2%)
Query: 323 SQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKA 382
S IR+ A ++ SK T PH L + V L+ R + +I A G +++ V+KA
Sbjct: 20 SGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRKKFKAIA-AEKGIKLTFLPYVVKA 78
Query: 383 AALALRKVPRCNSSWADEY--IRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEV 440
ALR+ P N+S DE I Q NI +A T+ GL VPVI+ AD+K + +A+E+
Sbjct: 79 LVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALAQEI 138
Query: 441 RQLAQKAKDNSLKPQDYE 458
+LA+KA+D L P + +
Sbjct: 139 NELAEKARDGKLTPGEMK 156
>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|B Chain B, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1C4T|C Chain C, Catalytic Domain From Trimeric Dihydrolipoamide
Succinyltransferase
pdb|1SCZ|A Chain A, Improved Structural Model For The Catalytic Domain Of
E.Coli Dihydrolipoamide Succinyltransferase
pdb|1E2O|A Chain A, Catalytic Domain From Dihydrolipoamide Succinyltransferase
Length = 233
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 71/137 (51%)
Query: 320 IPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLV 379
+P +++RK A RLL +K + ++ + +M LR Q E G R+
Sbjct: 7 VPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFY 66
Query: 380 IKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEE 439
+KA AL++ P N+S + + ++++AV T GL PV+RD D G++ I ++
Sbjct: 67 VKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKK 126
Query: 440 VRQLAQKAKDNSLKPQD 456
+++LA K +D L +D
Sbjct: 127 IKELAVKGRDGKLTVED 143
>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 319 DIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDL 378
++P +++ +I A+ L S +PH + L R ++ E AG +++V L
Sbjct: 17 EVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAE-KAGVKLTVLPL 75
Query: 379 VIKAAALALRKVPRCNSSWA---DEYIRQFKNVNINVAVQTENGLYVPVIRDADKK 431
++KA A L+++P NSS A IR+ K V+I AV T +GL VPVIR+ D+K
Sbjct: 76 LLKACAYLLKELPDFNSSLAPSGQALIRK-KYVHIGFAVDTPDGLLVPVIRNVDQK 130
>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 319 DIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDL 378
++P +++ +I A+ L S +PH + L R ++ E AG +++V L
Sbjct: 17 EVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAE-KAGVKLTVLPL 75
Query: 379 VIKAAALALRKVPRCNSSWA---DEYIRQFKNVNINVAVQTENGLYVPVIRDADKK 431
++KA A L+++P NSS A IR+ K V+I AV T +GL VPVIR+ D+K
Sbjct: 76 LLKACAYLLKELPDFNSSLAPSGQALIRK-KYVHIGFAVDTPDGLLVPVIRNVDQK 130
>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|B Chain B, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|C Chain C, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|D Chain D, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|E Chain E, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|F Chain F, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
pdb|3RQC|G Chain G, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid
Dehydrogenase Multienzyme Complex From Thermoplasma
Acidophilum
Length = 224
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 76/132 (57%), Gaps = 9/132 (6%)
Query: 325 IRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAA 384
+R+I ++ +KQ +PH+ + ++ V +++ + L+S + + ++++V + +
Sbjct: 14 LRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSI---LDSAK--ARNRKVTVTGFLARIVP 68
Query: 385 LALRKVPRCNSSWADEYIRQF---KNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVR 441
L++ P N+ + DE R + K NI +AV T +GL V VI+DAD+K + I+ E+
Sbjct: 69 SILKQYPYLNAIY-DETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEIS 127
Query: 442 QLAQKAKDNSLK 453
A +A++N L+
Sbjct: 128 DKASRARENKLQ 139
>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role
Of Ser558, His610 And Asn614 In The Catalytic Mechanism
Of Azotobacter Vinelandii Dihydrolipoamide
Acetyltransferase (E2p)
Length = 243
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 40/116 (34%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 319 DIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDL 378
++P +++ +I A+ L S +PH + L R ++ E AG +++V L
Sbjct: 17 EVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAE-KAGVKLTVLPL 75
Query: 379 VIKAAALALRKVPRCNSSWA---DEYIRQFKNVNINVAVQTENGLYVPVIRDADKK 431
++KA A L+++P NSS A IR+ K V+I AV T +GL VPVIR+ D+K
Sbjct: 76 LLKACAYLLKELPDFNSSLAPSGQALIRK-KYVHIGFAVDTPDGLLVPVIRNVDQK 130
>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid
Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis
Length = 250
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 9/132 (6%)
Query: 330 ASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRK 389
A ++ S + IP +V++ L+ LR++ SA I+ L ++ +AL+
Sbjct: 27 AEKMTLSHKEIPTAKASVEVICAELLRLRDRF-----VSAAPEITPFALTLRLLVIALKH 81
Query: 390 VPRCNSSWADE----YIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQ 445
NS+W D + + V++ TE GL VPV+ DA K +A V +L
Sbjct: 82 NVILNSTWVDSGEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELIT 141
Query: 446 KAKDNSLKPQDY 457
A++ +L P +
Sbjct: 142 GAREGTLTPAEL 153
>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAB|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAC|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAD|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAE|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
pdb|1EAF|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate
Dehydrogenase Multienzyme Complex
Length = 243
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 319 DIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDL 378
++P +++ +I A+ L S +PH + L R ++ + AG +++V L
Sbjct: 17 EVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAK-KAGVKLTVLPL 75
Query: 379 VIKAAALALRKVPRCNSSWA---DEYIRQFKNVNINVAVQTENGLYVPVIRDADKK 431
++KA A L+++P NSS A IR+ K V+I AV T +GL VPVIR+ D+K
Sbjct: 76 LLKACAYLLKELPDFNSSLAPSGQALIRK-KYVHIGFAVDTPDGLLVPVIRNVDQK 130
>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2IHW|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form
pdb|2II3|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II3|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Oxidized
Coenzyme A-Bound Form
pdb|2II4|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II4|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Coenzyme
A-Bound Form
pdb|2II5|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|B Chain B, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|C Chain C, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|D Chain D, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|E Chain E, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|F Chain F, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|G Chain G, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
pdb|2II5|H Chain H, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide
Acyltransferase (E2b) Component In The Branched-Chain
Alpha-Ketoacid Dehydrogenase Complex (Bckdc),
Isobutyryl-Coenzyme A-Bound Form
Length = 262
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 14/153 (9%)
Query: 307 GKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQE 366
GKD P + H + K ++ L IPH+ ++ + L+ LR +L I
Sbjct: 29 GKDRTEPVKGF----HKAMVKTMSAAL-----KIPHFGYCDEVDLTELVKLREELKPIAF 79
Query: 367 ASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFK---NVNINVAVQTENGLYVP 423
A G ++S +KAA+L L + P N+S DE + + NI +A+ TE GL VP
Sbjct: 80 AR-GIKLSFMPFFLKAASLGLLQFPILNAS-VDENCQNITYKASHNIGIAMDTEQGLIVP 137
Query: 424 VIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQD 456
+++ + + IA E+ +L + L D
Sbjct: 138 NVKNVQIRSIFEIATELNRLQKLGSAGQLSTND 170
>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
pdb|1LAC|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From
Bacillus Stearothermophilus Pyruvate Dehydrogenase
Multienzyme Complex
Length = 80
Score = 50.4 bits (119), Expect = 2e-06, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 179
E +P + + EG I +W K GD+V+ +VLCEV+ DKA VE+ +G + +I+ +
Sbjct: 3 EFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPE 62
Query: 180 GS 181
G+
Sbjct: 63 GT 64
>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, Minimized Average Structure
pdb|1GHK|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2-
Oxoglutarate Dehydrogenase Complex From Azotobacter
Vineland Ii, Nmr, 25 Structures
Length = 79
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 179
+I P+ ++ +G +A W KK G+ V E++ ++ETDK +E+ +G +A+IVK +
Sbjct: 3 DIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNE 62
Query: 180 GSKEIKVGEVIAITVE 195
G + GE++ E
Sbjct: 63 GDTVLS-GELLGKLTE 77
>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase
Component Of The 2-Oxoglutarate Dehydrogenase
Multienzyme Complex Of Escherichia Coli, Nmr, 25
Structures
Length = 80
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 179
+I +P L ++ + +A W KK GD V EVL E+ETDK +E+ +G L +++ +
Sbjct: 4 DILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDE 63
Query: 180 GS 181
G+
Sbjct: 64 GT 65
>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From
Thermoplasma Acidophilum
Length = 77
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/61 (39%), Positives = 33/61 (54%)
Query: 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 179
E +P + + EG I RW KEGD V + L EV TDK TV++ G + KI+ +
Sbjct: 3 EFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYRE 62
Query: 180 G 180
G
Sbjct: 63 G 63
>pdb|3RNM|E Chain E, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
pdb|3RNM|F Chain F, The Crystal Structure Of The Subunit Binding Of Human
Dihydrolipoamide Transacylase (E2b) Bound To Human
Dihydrolipoamide Dehydrogenase (E3)
Length = 58
Score = 42.7 bits (99), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 30/46 (65%)
Query: 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGKE 299
+ A+P RNLA E+N+ LS + G+G +G I+K DI +YL + E
Sbjct: 7 KTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTLE 52
>pdb|1W4I|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 62
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 24/36 (66%)
Query: 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDY 292
A P AR LA+E + LS +KGTGP G+I D++ Y
Sbjct: 7 AMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRY 42
>pdb|2COO|A Chain A, Solution Structure Of The E3_binding Domain Of
Dihydrolipoamide Branched Chaintransacylase
Length = 70
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASR-GKEVPAKAP 305
+ A+P R LA E+N+ LS + G+G +G I+K DI +YL + G +P P
Sbjct: 15 KTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTGAILPPSGP 67
>pdb|2CYU|A Chain A, Nmr Structure Of A Downhill Folding Protein
Length = 40
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 258 SPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294
SP R L EHN+ S+IKGTG G + + D+E +LA
Sbjct: 3 SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA 39
>pdb|2BTG|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|2BTH|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 47
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 258 SPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294
SP R L EHN+ S+IKGTG G + + D+E +LA
Sbjct: 9 SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKWLA 45
>pdb|1BAL|A Chain A, Three-Dimensional Solution Structure Of The E3-Binding
Domain Of The Dihydrolipoamide Succinyltransferase Core
From The 2-Oxoglutarate Dehydrogenase Multienzyme
Complex Of (Escherichia Coli)
pdb|1BBL|A Chain A, Three-Dimensional Solution Structure Of The E3-Binding
Domain Of The Dihydrolipoamide Succinyltransferase Core
From The 2-Oxoglutarate Dehydrogenase Multienzyme
Complex Of Escherichia Coli
Length = 51
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 258 SPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294
SP R L EHN+ S+IKGTG G + + D+E +LA
Sbjct: 13 SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA 49
>pdb|1W4H|A Chain A, Peripheral-Subunit From Mesophilic, Thermophilic And
Hyperthermophilic Bacteria Fold By Ultrafast, Apparently
Two-State Transitions
Length = 47
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 258 SPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294
SP R L EHN+ S+IKGTG G + + D+E +LA
Sbjct: 9 SPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLA 45
>pdb|1ZWV|A Chain A, Solution Structure Of The Subunit Binding Domain (Hbsbd)
Of The Human Mitochondrial Branched-Chain Alpha-Ketoacid
Dehydrogenase
Length = 58
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGKE 299
+ A+P R LA E+N+ LS + G+G +G I+K DI +YL + E
Sbjct: 7 KTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQTLE 52
>pdb|1K8O|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
pdb|1K8M|A Chain A, Solution Structure Of The Lipoic Acid-Bearing Domain Of
The E2 Component Of Human, Mitochondrial Branched-Chain
Alpha- Ketoacid Dehydrogenase
Length = 93
Score = 39.3 bits (90), Expect = 0.005, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKI 175
++E + W KEGD VS + +CEV++DKA+V + +G + K+
Sbjct: 16 IREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKL 61
>pdb|1W4E|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|1W4F|A Chain A, Peripheral-Subunit From Mesophilic, Thermophilic And
Hyperthermophilic Bacteria Fold By Ultrafast, Apparently
Two-State Transitions
Length = 47
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLAS 295
R+ A P R A E V + ++GTG NG ++K DI+ +LA
Sbjct: 5 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAWLAG 46
>pdb|1W3D|A Chain A, Nmr Structure Of The Peripheral-Subunit Binding Domain Of
Bacillus Stearothermophilus E2p
Length = 55
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLAS 295
R+ A P R A E V + ++GTG NG ++K DI+ +LA
Sbjct: 12 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLAG 53
>pdb|1W85|I Chain I, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|J Chain J, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W88|I Chain I, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|J Chain J, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 49
Score = 38.1 bits (87), Expect = 0.012, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294
R+ A P R A E V + ++GTG NG ++K DI+ +LA
Sbjct: 6 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 46
>pdb|1W4G|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Folding Transitions
Length = 47
Score = 38.1 bits (87), Expect = 0.013, Method: Composition-based stats.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294
R+ A P R A E V + ++GTG NG ++K DI+ +LA
Sbjct: 5 RVIAMPSVRKWAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 45
>pdb|2WXC|A Chain A, The Folding Mechanism Of Bbl: Plasticity Of Transition-
State Structure Observed Within An Ultrafast Folding
Protein Family
Length = 47
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 258 SPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294
SP R L E N+ S+IKGTG G + + D+E +LA
Sbjct: 9 SPAIRRLLAEWNLDASAIKGTGVGGRLTREDVEKHLA 45
>pdb|2PDD|A Chain A, The High Resolution Structure Of The Peripheral Subunit-
Binding Domain Of Dihydrolipoamide Acetyltransferase
From The Pyruvate Dehydrogenase Multienzyme Complex Of
Bacillus Stearothermophilus
Length = 43
Score = 36.2 bits (82), Expect = 0.043, Method: Composition-based stats.
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 255 LFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294
+ A P R A E V + ++GTG NG ++K DI+ +LA
Sbjct: 1 VIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 40
>pdb|1EBD|C Chain C, Dihydrolipoamide Dehydrogenase Complexed With The Binding
Domain Of The Dihydrolipoamide Acetylase
Length = 41
Score = 36.2 bits (82), Expect = 0.050, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294
A P R A E V + ++GTG NG ++K DI+ +LA
Sbjct: 2 AMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 39
>pdb|2PDE|A Chain A, The High Resolution Structure Of The Peripheral
Subunit-Binding Domain Of Dihydrolipoamide
Acetyltransferase From The Pyruvate Dehydrogenase
Multienzyme Complex Of Bacillus Stearothermophilus
Length = 43
Score = 35.8 bits (81), Expect = 0.054, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294
A P R A E V + ++GTG NG ++K DI+ +LA
Sbjct: 3 AMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 40
>pdb|1W4J|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
pdb|1W4K|A Chain A, Peripheral-Subunit Binding Domains From Mesophilic,
Thermophilic, And Hyperthermophilic Bacteria Fold By
Ultrafast, Apparently Two-State Transitions
Length = 51
Score = 35.8 bits (81), Expect = 0.058, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGK 298
A P AR LA+E + S +KGTGP G+I D++ + K
Sbjct: 7 AMPAARRLAKELGIDASKVKGTGPGGVITVEDVKRWAEETAK 48
>pdb|2F5Z|K Chain K, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|L Chain L, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|M Chain M, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|N Chain N, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F5Z|O Chain O, Crystal Structure Of Human Dihydrolipoamide Dehydrogenase
(E3) Complexed To The E3-Binding Domain Of Human E3-
Binding Protein
pdb|2F60|K Chain K, Crystal Structure Of The Dihydrolipoamide Dehydrogenase
(e3)-binding Domain Of Human E3-binding Protein
Length = 64
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 20/35 (57%)
Query: 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKAD 288
R SP ARN+ E+H++ S TGP G+ K D
Sbjct: 9 RFRLSPAARNILEKHSLDASQGTATGPRGIFTKED 43
>pdb|2EQ7|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdo
Length = 40
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 256 FASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYL 293
A P A L +E VS + ++GTG G I+K D+ +L
Sbjct: 1 LAMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL 38
>pdb|4ANU|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors.
pdb|4ANW|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 337 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 396
K+T PH+ DICV + LR+ N L+I + + + +P+ S
Sbjct: 862 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 907
Query: 397 WADEYIRQFKNVNIN 411
EYIR V N
Sbjct: 908 EDIEYIRDALTVGKN 922
>pdb|4ANX|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 337 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 396
K+T PH+ DICV + LR+ N L+I + + + +P+ S
Sbjct: 862 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 907
Query: 397 WADEYIRQFKNVNIN 411
EYIR V N
Sbjct: 908 EDIEYIRDALTVGKN 922
>pdb|3APC|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5132799
pdb|3APD|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5108134
pdb|3APF|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Ch5039699
Length = 966
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 337 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 396
K+T PH+ DICV + LR+ N L+I + + + +P+ S
Sbjct: 864 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 909
Query: 397 WADEYIRQFKNVNIN 411
EYIR V N
Sbjct: 910 EDIEYIRDALTVGKN 924
>pdb|1HE8|A Chain A, Ras G12v-Pi 3-Kinase Gamma Complex
Length = 965
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 337 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 396
K+T PH+ DICV + LR+ N L+I + + + +P+ S
Sbjct: 857 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 902
Query: 397 WADEYIRQFKNVNIN 411
EYIR V N
Sbjct: 903 EDIEYIRDALTVGKN 917
>pdb|3DBS|A Chain A, Structure Of Pi3k Gamma In Complex With Gdc0941
pdb|3L13|A Chain A, Crystal Structures Of Pan-Pi3-Kinase And Dual
Pan-Pi3-KinaseMTOR Inhibitors
pdb|4AOF|A Chain A, Selective Small Molecule Inhibitor Discovered By
Chemoproteomic Assay Platform Reveals Regulation Of Th17
Cell Differentiation By Pi3kgamma
Length = 960
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 337 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 396
K+T PH+ DICV + LR+ N L+I + + + +P+ S
Sbjct: 858 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 903
Query: 397 WADEYIRQFKNVNIN 411
EYIR V N
Sbjct: 904 EDIEYIRDALTVGKN 918
>pdb|3CST|A Chain A, Crystal Structure Of Pi3k P110gamma Catalytical Domain In
Complex With Organoruthenium Inhibitor E5e2
pdb|3CSF|A Chain A, Crystal Structure Of Pi3k P110gamma Catalytical Domain In
Complex With Organoruthenium Inhibitor Dw2
pdb|3L16|A Chain A, Discovery Of (Thienopyrimidin-2-Yl)aminopyrimidines As
Potent, Selective, And Orally Available Pan-Pi3-Kinase
And Dual Pan-Pi3- KinaseMTOR INHIBITORS FOR THE
TREATMENT OF CANCER
pdb|3L17|A Chain A, Discovery Of (Thienopyrimidin-2-Yl)aminopyrimidines As
Potent, Selective, And Orally Available Pan-Pi3-Kinase
And Dual Pan-Pi3- KinaseMTOR INHIBITORS FOR THE
TREATMENT OF CANCER
pdb|3L08|A Chain A, Structure Of Pi3k Gamma With A Potent Inhibitor:
Gsk2126458
pdb|3OAW|A Chain A, 4-Methylpteridineones As Orally Active And Selective
Pi3kMTOR DUAL Inhibitors
pdb|3PRE|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3PRZ|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3PS6|A Chain A, Quinazolines With Intra-Molecular Hydrogen Bonding
Scaffold (Imhbs) As Pi3kMTOR DUAL INHIBITORS.
pdb|3R7Q|A Chain A, Structure-Based Design Of Thienobenzoxepin Inhibitors Of
Pi3- Kinase
pdb|3R7R|A Chain A, Structure-Based Design Of Thienobenzoxepin Inhibitors Of
Pi3-Kinase
pdb|3ZVV|A Chain A, Fragment Bound To Pi3kinase Gamma
pdb|3ZW3|A Chain A, Fragment Based Discovery Of A Novel And Selective Pi3
Kinase Inhibitor
pdb|3TL5|A Chain A, Discovery Of Gdc-0980: A Potent, Selective, And Orally
Available Class I Phosphatidylinositol 3-Kinase
(Pi3k)MAMMALIAN TARGET OF RAPAMYCIN (Mtor) Kinase
Inhibitor For The Treatment Of Cancer
pdb|3T8M|A Chain A, Rational Design Of Pi3k-Alpha Inhibitors That Exhibit
Selectivity Over The Pi3k-Beta Isoform
pdb|4GB9|A Chain A, Potent And Highly Selective Benzimidazole Inhibitors Of
Pi3k-Delta
pdb|4G11|A Chain A, X-Ray Structure Of Pi3k-Gamma Bound To A
4-(Morpholin-4-Yl)- (6-Oxo-1,
6-Dihydropyrimidin-2-Yl)amide Inhibitor
pdb|4HLE|A Chain A, Compound 21 (1-alkyl-substituted 1,2,4-triazoles)
Length = 966
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 337 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 396
K+T PH+ DICV + LR+ N L+I + + + +P+ S
Sbjct: 858 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 903
Query: 397 WADEYIRQFKNVNIN 411
EYIR V N
Sbjct: 904 EDIEYIRDALTVGKN 918
>pdb|1E8Y|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|1E8Z|A Chain A, Structure Determinants Of Phosphoinositide 3-Kinase
Inhibition By Wortmannin, Ly294002, Quercetin, Myricetin
And Staurosporine
pdb|2A4Z|A Chain A, Crystal Structure Of Human Pi3kgamma Complexed With
As604850
pdb|2A5U|A Chain A, Crystal Structure Of Human Pi3kgamma Complexed With
As605240
pdb|2CHW|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110 Alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-39
pdb|2CHX|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-90
pdb|2CHZ|A Chain A, A Pharmacological Map Of The Pi3-K Family Defines A Role
For P110alpha In Signaling: The Structure Of Complex Of
Phosphoinositide 3-Kinase Gamma With Inhibitor Pik-93
pdb|3DPD|A Chain A, Achieving Multi-Isoform Pi3k Inhibition In A Series Of
Substituted 3,4-Dihydro-2h-Benzo[1,4]oxazines
pdb|2V4L|A Chain A, Complex Of Human Phosphoinositide 3-kinase Catalytic
Subunit Gamma (p110 Gamma) With Pik-284
pdb|3IBE|A Chain A, Crystal Structure Of A Pyrazolopyrimidine Inhibitor Bound
To Pi3 Kinase Gamma
pdb|3LJ3|A Chain A, Pi3-Kinase-Gamma With A Pyrrolopyridine-Benzofuran
Inhibitor
pdb|3ML8|A Chain A, Discovery Of The Highly Potent Pi3kMTOR DUAL INHIBITOR
PF-0 Through Structure Based Drug Design
pdb|3ML9|A Chain A, Discovery Of The Highly Potent Pi3kMTOR DUAL INHIBITOR
PF-0 Through Structure Based Drug Design
pdb|3MJW|A Chain A, Pi3 Kinase Gamma With A Benzofuranone Inhibitor
pdb|3P2B|A Chain A, Crystal Structure Of Pi3k Gamma With
3-(2-Morpholino-6-(Pyridin-3-
Ylamino)pyrimidin-4-Yl)phenol
pdb|3SD5|A Chain A, Crystal Structure Of Pi3k Gamma With
5-(2,4-Dimorpholinopyrimidin-6-
Yl)-4-(Trifluoromethyl)pyridin-2-Amine
pdb|3TJP|A Chain A, Crystal Structure Of Pi3k Gamma With
N6-(3,4-Dimethoxyphenyl)-2-
Morpholino-[4,5'-Bipyrimidine]-2',6-Diamine
pdb|4FUL|A Chain A, Pi3 Kinase Gamma Bound To A Pyrmidine Inhibitor
Length = 966
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 337 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 396
K+T PH+ DICV + LR+ N L+I + + + +P+ S
Sbjct: 858 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 903
Query: 397 WADEYIRQFKNVNIN 411
EYIR V N
Sbjct: 904 EDIEYIRDALTVGKN 918
>pdb|3QAQ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Triazine-Benzimidazole 1
pdb|3QAR|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Triazine-Benzimidazole 32
pdb|3QJZ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Benzothiazole 1
pdb|3QK0|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Benzothiazole 82
pdb|3S2A|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With A
Quinoline Inhibitor
pdb|4FHJ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Imidazopyridine 2
pdb|4F1S|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With A
Pyridyl- Triazine-Sulfonamide Inhibitor
pdb|4FLH|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With
Amg511
pdb|4FJY|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Quinoline-Indoline Inhibitor 24f
pdb|4FJZ|A Chain A, Crystal Structure Of Pi3k-Gamma In Complex With
Pyrrolo-Pyridine Inhibitor 63
Length = 960
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 337 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 396
K+T PH+ DICV + LR+ N L+I + + + +P+ S
Sbjct: 858 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 903
Query: 397 WADEYIRQFKNVNIN 411
EYIR V N
Sbjct: 904 EDIEYIRDALTVGKN 918
>pdb|3JSL|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+-
Dependent Dna Ligase From Staphylococcus Aureus
pdb|3JSL|B Chain B, Crystal Structure Of The Adenylation Domain Of Nad+-
Dependent Dna Ligase From Staphylococcus Aureus
pdb|3JSN|A Chain A, Crystal Structure Of The Adenylation Domain Of Nad+-
Dependent Dna Ligase From Staphylococcus Aureus
Length = 318
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/59 (20%), Positives = 33/59 (55%)
Query: 123 MPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGS 181
M SL E ++ ++ ++ +++ E +CE++ D V ++ ++ ++ + +GDG+
Sbjct: 79 MLSLGNAFNEDDLRKFDQRIREQIGNVEYMCELKIDGLAVSLKYVDGYFVQGLTRGDGT 137
>pdb|4DK5|A Chain A, Crystal Structure Of Human Pi3k-Gamma In Complex With A
Pyridyl- Triazine Inhibitor
Length = 959
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 337 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 396
K+T PH+ DICV + LR+ N L+I + + + +P+ S
Sbjct: 857 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 902
Query: 397 WADEYIRQFKNVNIN 411
EYIR V N
Sbjct: 903 EDIEYIRDALTVGKN 917
>pdb|3ENE|A Chain A, Complex Of Pi3k Gamma With An Inhibitor
Length = 959
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 337 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 396
K+T PH+ DICV + LR+ N L+I + + + +P+ S
Sbjct: 857 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 902
Query: 397 WADEYIRQFKNVNIN 411
EYIR V N
Sbjct: 903 EDIEYIRDALTVGKN 917
>pdb|3NZS|A Chain A, Structure-Based Optimization Of Pyrazolo -Pyrimidine And
-Pyridine Inhibitors Of Pi3-Kinase
pdb|3NZU|A Chain A, Structure-Based Optimization Of Pyrazolo -Pyrimidine And
-Pyridine Inhibitors Of Pi3-Kinase
Length = 954
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 337 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 396
K+T PH+ DICV + LR+ N L+I + + + +P+ S
Sbjct: 854 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 899
Query: 397 WADEYIRQFKNVNIN 411
EYIR V N
Sbjct: 900 EDIEYIRDALTVGKN 914
>pdb|4ANV|A Chain A, Complexes Of Pi3kgamma With Isoform Selective Inhibitors
Length = 980
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 14/75 (18%)
Query: 337 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 396
K+T PH+ DICV + LR+ N L+I + + + +P S
Sbjct: 862 KKTSPHFQKFQDICVKAYLALRHH--------------TNLLIILFSMMLMTGMPELTSK 907
Query: 397 WADEYIRQFKNVNIN 411
EYIR V N
Sbjct: 908 EDIEYIRDALTVGKN 922
>pdb|2EQ9|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|F Chain F, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|I Chain I, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
pdb|2EQ9|L Chain L, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdb
Length = 41
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 255 LFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDY 292
+ A P AR LA E + + + G+GP G + D+ Y
Sbjct: 1 MLAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAY 38
>pdb|2EQ8|C Chain C, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
pdb|2EQ8|F Chain F, Crystal Structure Of Lipoamide Dehydrogenase From Thermus
Thermophilus Hb8 With Psbdp
Length = 40
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADI 289
A+P R LA E V L+ ++GTG G I + D+
Sbjct: 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDV 34
>pdb|3L54|A Chain A, Structure Of Pi3k Gamma With Inhibitor
Length = 966
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 14/75 (18%)
Query: 337 KQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 396
K+T PH+ D+CV + LR+ N L+I + + + +P+ S
Sbjct: 858 KKTSPHFQKFQDVCVKAYLALRHH--------------TNLLIILFSMMLMTGMPQLTSK 903
Query: 397 WADEYIRQFKNVNIN 411
EYIR V N
Sbjct: 904 EDIEYIRDALTVGKN 918
>pdb|1QJO|A Chain A, Innermost Lipoyl Domain Of The Pyruvate Dehydrogenase From
Escherichia Coli
Length = 80
Score = 29.6 bits (65), Expect = 4.7, Method: Composition-based stats.
Identities = 22/74 (29%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKG 178
+E+ +P + E + + K GDKV+ + L VE DKA++E+ G + ++
Sbjct: 3 KEVNVPDIGG--DEVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVN 60
Query: 179 DGSKEIKVGEVIAI 192
G K +K G +I I
Sbjct: 61 VGDK-VKTGSLIMI 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.131 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,919,318
Number of Sequences: 62578
Number of extensions: 489625
Number of successful extensions: 1053
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 993
Number of HSP's gapped (non-prelim): 68
length of query: 508
length of database: 14,973,337
effective HSP length: 103
effective length of query: 405
effective length of database: 8,527,803
effective search space: 3453760215
effective search space used: 3453760215
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 54 (25.4 bits)