Query 010531
Match_columns 508
No_of_seqs 252 out of 2067
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 01:37:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02744 dihydrolipoyllysine-r 100.0 3E-100 7E-105 822.3 39.8 483 2-498 1-492 (539)
2 KOG0557 Dihydrolipoamide acety 100.0 1.4E-79 3.1E-84 636.1 31.2 395 98-500 18-422 (470)
3 TIGR02927 SucB_Actino 2-oxoglu 100.0 2.5E-75 5.5E-80 640.9 37.8 373 116-493 133-530 (590)
4 PRK05704 dihydrolipoamide succ 100.0 2E-74 4.4E-79 608.9 37.1 345 119-493 3-353 (407)
5 TIGR01347 sucB 2-oxoglutarate 100.0 4E-74 8.7E-79 605.6 37.4 345 119-493 1-349 (403)
6 TIGR01349 PDHac_trf_mito pyruv 100.0 1.6E-71 3.5E-76 591.5 37.3 364 120-493 1-380 (435)
7 TIGR01348 PDHac_trf_long pyruv 100.0 1.6E-71 3.5E-76 606.4 36.8 365 119-498 117-501 (546)
8 COG0508 AceF Pyruvate/2-oxoglu 100.0 2.9E-71 6.2E-76 584.4 33.0 349 118-497 2-358 (404)
9 PLN02528 2-oxoisovalerate dehy 100.0 5.3E-70 1.1E-74 577.0 35.6 351 121-503 1-372 (416)
10 PRK11854 aceF pyruvate dehydro 100.0 1.4E-66 3.1E-71 576.6 36.6 360 117-496 205-587 (633)
11 PLN02226 2-oxoglutarate dehydr 100.0 3.5E-65 7.5E-70 541.0 33.8 336 96-493 68-409 (463)
12 PRK11855 dihydrolipoamide acet 100.0 4.8E-64 1.1E-68 548.9 35.2 357 118-493 119-495 (547)
13 PTZ00144 dihydrolipoamide succ 100.0 1.1E-63 2.4E-68 525.9 33.8 322 114-493 40-364 (418)
14 PRK11856 branched-chain alpha- 100.0 1.8E-62 3.8E-67 520.0 37.2 351 119-493 3-358 (411)
15 KOG0558 Dihydrolipoamide trans 100.0 1.6E-63 3.5E-68 497.5 23.1 343 117-493 63-418 (474)
16 KOG0559 Dihydrolipoamide succi 100.0 4.1E-58 8.9E-63 460.8 24.0 319 118-483 72-390 (457)
17 PRK14843 dihydrolipoamide acet 100.0 2E-55 4.3E-60 455.5 21.7 237 253-493 47-295 (347)
18 PRK11857 dihydrolipoamide acet 100.0 1.1E-54 2.4E-59 443.1 22.8 235 255-493 2-253 (306)
19 PF00198 2-oxoacid_dh: 2-oxoac 100.0 6.5E-42 1.4E-46 337.2 15.3 180 316-502 3-189 (231)
20 PRK12270 kgd alpha-ketoglutara 100.0 3.6E-35 7.8E-40 325.3 23.1 172 317-493 115-298 (1228)
21 PRK14875 acetoin dehydrogenase 99.8 3.9E-18 8.5E-23 175.4 12.6 76 118-194 2-77 (371)
22 PF00364 Biotin_lipoyl: Biotin 99.7 4.9E-18 1.1E-22 139.1 7.9 74 119-193 1-74 (74)
23 PRK06748 hypothetical protein; 99.7 6.2E-16 1.3E-20 129.3 9.9 62 132-194 12-74 (83)
24 PRK11892 pyruvate dehydrogenas 99.6 5.3E-15 1.2E-19 159.4 15.8 83 119-201 3-85 (464)
25 PRK05889 putative acetyl-CoA c 99.5 9.7E-14 2.1E-18 112.7 9.6 61 132-193 10-70 (71)
26 cd06663 Biotinyl_lipoyl_domain 99.5 1.5E-13 3.2E-18 111.4 9.9 72 121-193 2-73 (73)
27 TIGR02927 SucB_Actino 2-oxoglu 99.5 3.8E-13 8.2E-18 149.2 13.4 77 119-196 3-79 (590)
28 PRK11854 aceF pyruvate dehydro 99.5 2.7E-13 5.9E-18 151.6 11.7 75 119-196 3-77 (633)
29 PRK08225 acetyl-CoA carboxylas 99.4 2.1E-12 4.6E-17 104.3 9.0 61 132-193 9-69 (70)
30 COG0511 AccB Biotin carboxyl c 99.4 1.8E-12 3.8E-17 119.0 8.2 62 131-193 77-138 (140)
31 PF02817 E3_binding: e3 bindin 99.4 4.6E-13 1E-17 96.5 3.4 38 254-291 2-39 (39)
32 PRK11855 dihydrolipoamide acet 99.3 7.6E-12 1.7E-16 138.0 11.3 76 119-196 3-78 (547)
33 PRK06549 acetyl-CoA carboxylas 99.3 1.8E-11 4E-16 110.8 9.3 62 131-193 68-129 (130)
34 TIGR01348 PDHac_trf_long pyruv 99.2 2.1E-11 4.6E-16 134.3 10.7 74 120-195 2-75 (546)
35 cd06850 biotinyl_domain The bi 99.2 7E-11 1.5E-15 92.9 9.2 62 131-193 6-67 (67)
36 PRK05641 putative acetyl-CoA c 99.2 4.2E-11 9.1E-16 111.4 9.0 62 131-193 91-152 (153)
37 PRK07051 hypothetical protein; 99.2 6.4E-11 1.4E-15 98.5 9.2 61 133-194 12-79 (80)
38 cd06849 lipoyl_domain Lipoyl d 99.2 3.9E-10 8.5E-15 88.0 10.9 73 120-193 2-74 (74)
39 PLN02983 biotin carboxyl carri 99.2 9.1E-11 2E-15 116.6 8.8 61 132-193 205-272 (274)
40 TIGR00531 BCCP acetyl-CoA carb 99.1 1.5E-10 3.2E-15 108.2 8.5 61 132-193 88-155 (156)
41 PRK06302 acetyl-CoA carboxylas 99.1 2.9E-10 6.3E-15 106.1 8.7 60 133-193 88-154 (155)
42 PRK14042 pyruvate carboxylase 99.0 5.7E-10 1.2E-14 123.6 9.9 62 132-194 533-594 (596)
43 TIGR02712 urea_carbox urea car 99.0 1.4E-09 3E-14 129.3 9.7 62 131-193 1139-1200(1201)
44 TIGR01108 oadA oxaloacetate de 98.9 2.2E-09 4.8E-14 119.0 7.8 59 131-190 524-582 (582)
45 PRK14040 oxaloacetate decarbox 98.9 5.9E-09 1.3E-13 115.9 9.6 62 131-193 531-592 (593)
46 TIGR01235 pyruv_carbox pyruvat 98.8 8E-09 1.7E-13 122.1 9.3 61 132-193 1082-1142(1143)
47 PRK09282 pyruvate carboxylase 98.7 3.9E-08 8.5E-13 109.5 9.1 62 131-193 529-590 (592)
48 PRK12999 pyruvate carboxylase; 98.6 1.3E-07 2.9E-12 112.2 9.3 61 132-193 1084-1144(1146)
49 COG4770 Acetyl/propionyl-CoA c 98.4 5.6E-07 1.2E-11 97.4 7.5 63 131-194 582-644 (645)
50 COG1038 PycA Pyruvate carboxyl 98.3 1.2E-06 2.7E-11 97.6 6.7 66 126-193 1082-1147(1149)
51 cd06848 GCS_H Glycine cleavage 98.3 1.7E-06 3.6E-11 74.4 5.9 62 119-181 16-78 (96)
52 KOG0369 Pyruvate carboxylase [ 97.9 2.4E-05 5.2E-10 86.1 7.3 61 132-193 1114-1174(1176)
53 TIGR03077 not_gcvH glycine cle 97.9 2.1E-05 4.5E-10 69.6 5.4 46 134-180 33-78 (110)
54 PRK00624 glycine cleavage syst 97.8 3.8E-05 8.2E-10 68.4 5.4 42 134-176 35-76 (114)
55 KOG0238 3-Methylcrotonyl-CoA c 97.7 0.00015 3.2E-09 78.1 9.0 61 132-193 609-669 (670)
56 KOG0368 Acetyl-CoA carboxylase 97.6 7.8E-05 1.7E-09 87.7 6.6 66 129-196 690-755 (2196)
57 PRK14843 dihydrolipoamide acet 97.6 3E-05 6.6E-10 81.4 2.9 42 253-294 4-45 (347)
58 TIGR00998 8a0101 efflux pump m 97.6 0.00015 3.3E-09 74.7 8.0 35 162-197 205-239 (334)
59 PRK13380 glycine cleavage syst 97.6 0.00011 2.5E-09 67.9 6.0 60 119-179 31-91 (144)
60 PRK09783 copper/silver efflux 97.6 0.00025 5.4E-09 76.1 9.4 66 131-197 130-244 (409)
61 TIGR01730 RND_mfp RND family e 97.5 0.00013 2.9E-09 74.1 6.2 65 131-196 33-168 (322)
62 PRK10559 p-hydroxybenzoic acid 97.5 0.0002 4.4E-09 73.9 7.5 65 131-196 54-188 (310)
63 PF00302 CAT: Chloramphenicol 97.4 0.0017 3.6E-08 63.7 12.1 139 338-487 23-172 (206)
64 PRK10476 multidrug resistance 97.4 0.00035 7.6E-09 72.9 7.3 35 162-197 209-243 (346)
65 PRK01202 glycine cleavage syst 97.3 0.0004 8.7E-09 62.9 5.2 36 141-176 46-81 (127)
66 PRK15136 multidrug efflux syst 97.2 0.00066 1.4E-08 72.3 7.4 35 162-197 216-250 (390)
67 TIGR00527 gcvH glycine cleavag 97.2 0.00044 9.5E-09 62.7 5.0 38 140-177 44-81 (127)
68 PRK03598 putative efflux pump 97.2 0.00063 1.4E-08 70.5 6.6 34 162-196 204-237 (331)
69 PRK09578 periplasmic multidrug 97.2 0.00082 1.8E-08 71.2 7.2 65 131-196 70-207 (385)
70 PRK13757 chloramphenicol acety 97.1 0.0087 1.9E-07 59.2 13.3 136 341-487 31-175 (219)
71 PRK09859 multidrug efflux syst 97.0 0.0018 3.9E-08 68.7 7.5 65 131-196 68-205 (385)
72 PF13533 Biotin_lipoyl_2: Biot 96.9 0.0016 3.4E-08 49.5 4.8 34 161-195 2-35 (50)
73 PRK15030 multidrug efflux syst 96.9 0.0023 4.9E-08 68.3 7.5 65 131-196 72-209 (397)
74 PF13533 Biotin_lipoyl_2: Biot 96.9 0.0011 2.3E-08 50.4 3.4 29 131-159 9-37 (50)
75 PRK11578 macrolide transporter 96.8 0.0032 7E-08 66.3 7.7 64 132-196 69-220 (370)
76 PF01597 GCV_H: Glycine cleava 96.8 0.0029 6.2E-08 56.9 6.1 37 140-176 39-75 (122)
77 PRK11556 multidrug efflux syst 96.8 0.0027 5.9E-08 68.2 6.8 64 131-195 94-230 (415)
78 PRK12784 hypothetical protein; 96.7 0.0086 1.9E-07 49.4 7.8 63 131-194 12-75 (84)
79 TIGR02971 heterocyst_DevB ABC 96.5 0.0058 1.3E-07 63.0 6.8 32 163-196 206-237 (327)
80 COG0509 GcvH Glycine cleavage 96.5 0.0031 6.8E-08 57.2 4.1 44 133-176 39-83 (131)
81 PF12700 HlyD_2: HlyD family s 96.4 0.0022 4.7E-08 65.3 3.1 26 131-157 28-53 (328)
82 TIGR03309 matur_yqeB selenium- 96.2 0.013 2.7E-07 59.1 7.4 55 132-193 172-226 (256)
83 TIGR01843 type_I_hlyD type I s 95.5 0.04 8.7E-07 58.2 8.1 33 163-196 273-306 (423)
84 PRK05889 putative acetyl-CoA c 95.4 0.033 7.1E-07 45.0 5.3 32 163-195 4-35 (71)
85 PF13375 RnfC_N: RnfC Barrel s 95.3 0.022 4.7E-07 49.7 4.3 56 119-178 28-83 (101)
86 cd06253 M14_ASTE_ASPA_like_3 A 95.3 0.06 1.3E-06 55.6 8.0 59 132-193 236-297 (298)
87 cd06251 M14_ASTE_ASPA_like_1 A 95.0 0.073 1.6E-06 54.5 7.8 58 133-193 227-286 (287)
88 cd06250 M14_PaAOTO_like An unc 95.0 0.071 1.5E-06 56.5 7.7 59 132-193 296-358 (359)
89 PRK08225 acetyl-CoA carboxylas 94.9 0.03 6.4E-07 45.0 3.7 26 131-156 45-70 (70)
90 COG4845 Chloramphenicol O-acet 94.5 0.23 5.1E-06 48.4 9.2 103 338-451 26-129 (219)
91 TIGR02994 ectoine_eutE ectoine 94.3 0.12 2.5E-06 54.2 7.3 58 133-193 263-324 (325)
92 cd06252 M14_ASTE_ASPA_like_2 A 94.3 0.16 3.5E-06 52.7 8.4 60 132-194 251-314 (316)
93 COG3608 Predicted deacylase [G 94.1 0.12 2.7E-06 53.9 7.0 62 131-195 262-326 (331)
94 PRK06748 hypothetical protein; 94.1 0.09 1.9E-06 44.4 4.9 31 164-195 7-37 (83)
95 cd06850 biotinyl_domain The bi 93.6 0.11 2.5E-06 40.1 4.4 30 164-194 2-31 (67)
96 COG0511 AccB Biotin carboxyl c 93.6 0.11 2.4E-06 47.8 4.9 36 160-196 69-104 (140)
97 PF13437 HlyD_3: HlyD family s 93.5 0.11 2.4E-06 44.3 4.5 32 164-196 2-33 (105)
98 PF05896 NQRA: Na(+)-transloca 93.2 0.096 2.1E-06 53.0 4.1 41 136-179 41-83 (257)
99 cd06254 M14_ASTE_ASPA_like_4 A 92.4 0.29 6.4E-06 50.1 6.5 56 132-190 230-287 (288)
100 PRK07051 hypothetical protein; 92.4 0.18 3.8E-06 41.8 4.0 27 130-156 53-79 (80)
101 PF09891 DUF2118: Uncharacteri 92.2 0.21 4.7E-06 46.6 4.7 48 131-178 87-135 (150)
102 PRK05035 electron transport co 91.7 0.3 6.6E-06 56.0 6.2 57 116-176 32-88 (695)
103 PRK06549 acetyl-CoA carboxylas 91.1 0.42 9E-06 43.7 5.3 34 161-195 61-94 (130)
104 KOG0559 Dihydrolipoamide succi 91.1 1.3 2.8E-05 46.7 9.4 36 119-158 114-149 (457)
105 TIGR01936 nqrA NADH:ubiquinone 91.0 0.2 4.4E-06 54.6 3.7 45 132-177 37-81 (447)
106 PRK10476 multidrug resistance 90.8 0.43 9.3E-06 49.8 5.9 39 153-194 42-80 (346)
107 PF00529 HlyD: HlyD family sec 90.1 0.26 5.6E-06 49.6 3.4 33 162-195 2-34 (305)
108 TIGR00998 8a0101 efflux pump m 89.9 0.39 8.5E-06 49.5 4.7 34 160-194 41-74 (334)
109 PRK05641 putative acetyl-CoA c 89.6 0.62 1.3E-05 43.7 5.2 32 162-194 85-116 (153)
110 PRK05352 Na(+)-translocating N 89.4 0.5 1.1E-05 51.6 5.1 43 133-176 39-81 (448)
111 TIGR02971 heterocyst_DevB ABC 88.9 0.65 1.4E-05 47.9 5.3 41 154-195 6-49 (327)
112 PF00364 Biotin_lipoyl: Biotin 88.7 0.54 1.2E-05 38.3 3.7 33 163-196 2-40 (74)
113 TIGR01730 RND_mfp RND family e 88.6 0.78 1.7E-05 46.5 5.6 39 154-194 20-58 (322)
114 TIGR01945 rnfC electron transp 88.5 0.42 9.2E-06 51.9 3.8 43 133-176 40-82 (435)
115 PF00529 HlyD: HlyD family sec 87.7 0.38 8.3E-06 48.4 2.7 29 131-159 8-36 (305)
116 TIGR01235 pyruv_carbox pyruvat 87.7 1.1 2.3E-05 54.4 6.8 61 133-195 1047-1107(1143)
117 PF12700 HlyD_2: HlyD family s 87.4 0.61 1.3E-05 47.4 4.0 39 153-195 15-53 (328)
118 TIGR01843 type_I_hlyD type I s 87.1 1 2.2E-05 47.6 5.6 42 153-195 35-76 (423)
119 PF13437 HlyD_3: HlyD family s 86.9 1.3 2.9E-05 37.6 5.3 27 131-157 6-32 (105)
120 cd06255 M14_ASTE_ASPA_like_5 A 86.8 1.9 4.2E-05 44.3 7.2 41 135-175 241-283 (293)
121 PRK11578 macrolide transporter 86.8 1.4 3.1E-05 46.4 6.4 55 137-193 38-92 (370)
122 TIGR00999 8a0102 Membrane Fusi 86.7 0.97 2.1E-05 44.8 4.9 35 161-196 88-122 (265)
123 PRK11556 multidrug efflux syst 86.6 1.4 3.1E-05 47.4 6.5 55 138-194 65-119 (415)
124 TIGR03794 NHPM_micro_HlyD NHPM 86.3 1.1 2.3E-05 48.3 5.3 37 158-195 55-91 (421)
125 PRK09859 multidrug efflux syst 86.3 1.7 3.7E-05 46.1 6.8 54 139-194 40-93 (385)
126 TIGR01000 bacteriocin_acc bact 86.2 1.2 2.7E-05 48.4 5.8 41 154-195 52-92 (457)
127 PRK03598 putative efflux pump 86.1 1 2.2E-05 46.7 4.8 33 161-194 43-75 (331)
128 PRK10559 p-hydroxybenzoic acid 85.9 0.97 2.1E-05 46.8 4.5 33 162-195 48-80 (310)
129 PF07831 PYNP_C: Pyrimidine nu 85.8 0.81 1.8E-05 37.8 3.1 30 130-159 28-57 (75)
130 KOG3373 Glycine cleavage syste 85.8 0.55 1.2E-05 44.2 2.3 39 141-179 89-127 (172)
131 PRK15136 multidrug efflux syst 85.6 0.99 2.1E-05 48.2 4.5 33 161-194 61-93 (390)
132 COG4656 RnfC Predicted NADH:ub 85.5 0.89 1.9E-05 50.1 4.1 53 119-176 31-83 (529)
133 TIGR00531 BCCP acetyl-CoA carb 85.5 0.79 1.7E-05 43.0 3.3 27 130-156 130-156 (156)
134 PRK06302 acetyl-CoA carboxylas 85.0 0.91 2E-05 42.5 3.5 27 130-156 129-155 (155)
135 PRK09578 periplasmic multidrug 84.3 2.2 4.7E-05 45.3 6.4 54 139-194 42-95 (385)
136 PF04952 AstE_AspA: Succinylgl 83.8 2.8 6E-05 42.5 6.7 59 133-194 228-290 (292)
137 PLN02226 2-oxoglutarate dehydr 82.8 1.3 2.8E-05 48.6 4.0 30 129-158 139-168 (463)
138 COG1726 NqrA Na+-transporting 82.7 1.4 3E-05 46.5 4.0 39 137-178 42-82 (447)
139 PLN02983 biotin carboxyl carri 81.6 1.5 3.2E-05 44.6 3.6 25 132-156 249-273 (274)
140 PF02749 QRPTase_N: Quinolinat 81.0 1.2 2.7E-05 37.5 2.5 23 135-157 46-68 (88)
141 PRK15030 multidrug efflux syst 80.6 2.3 5E-05 45.4 5.0 42 151-194 56-97 (397)
142 PRK09783 copper/silver efflux 80.5 2.3 4.9E-05 45.8 4.9 44 150-194 111-156 (409)
143 COG4072 Uncharacterized protei 80.3 3.8 8.2E-05 37.7 5.4 45 131-175 98-143 (161)
144 PRK14042 pyruvate carboxylase 79.8 2.6 5.6E-05 47.8 5.1 33 163-196 527-559 (596)
145 COG0845 AcrA Membrane-fusion p 78.2 6.2 0.00013 39.7 7.0 46 148-195 54-99 (372)
146 COG1566 EmrA Multidrug resista 77.1 2.6 5.7E-05 44.7 4.0 34 163-197 210-243 (352)
147 TIGR01108 oadA oxaloacetate de 77.1 3.4 7.4E-05 46.7 5.1 34 162-196 518-551 (582)
148 TIGR03794 NHPM_micro_HlyD NHPM 76.5 3.3 7.1E-05 44.5 4.6 33 162-195 254-286 (421)
149 PRK09439 PTS system glucose-sp 76.4 6.6 0.00014 37.5 6.1 18 175-193 106-123 (169)
150 TIGR01000 bacteriocin_acc bact 75.9 2.5 5.4E-05 46.0 3.6 31 130-160 65-95 (457)
151 PRK05305 phosphatidylserine de 75.1 6.5 0.00014 38.4 5.9 54 133-192 150-204 (206)
152 PRK09439 PTS system glucose-sp 74.5 5.4 0.00012 38.1 5.0 29 132-160 100-128 (169)
153 cd00210 PTS_IIA_glc PTS_IIA, P 74.1 9.1 0.0002 34.7 6.1 19 174-193 83-101 (124)
154 cd06663 Biotinyl_lipoyl_domain 73.7 3.9 8.5E-05 32.5 3.3 25 131-155 49-73 (73)
155 PRK14875 acetoin dehydrogenase 73.2 4.1 8.9E-05 41.8 4.2 29 131-159 52-80 (371)
156 cd06849 lipoyl_domain Lipoyl d 73.0 4.1 8.8E-05 30.8 3.2 24 132-155 51-74 (74)
157 PRK14040 oxaloacetate decarbox 72.8 5.1 0.00011 45.4 5.1 34 161-195 524-557 (593)
158 COG0845 AcrA Membrane-fusion p 72.3 3.3 7.1E-05 41.7 3.2 27 131-157 73-99 (372)
159 COG4770 Acetyl/propionyl-CoA c 72.3 4.7 0.0001 45.1 4.5 34 162-196 576-609 (645)
160 PF00358 PTS_EIIA_1: phosphoen 72.2 6.2 0.00014 36.1 4.6 17 176-193 89-105 (132)
161 PRK05704 dihydrolipoamide succ 72.1 4.5 9.7E-05 43.8 4.3 31 129-159 50-80 (407)
162 TIGR00164 PS_decarb_rel phosph 72.0 8.4 0.00018 37.1 5.8 52 133-190 130-181 (189)
163 TIGR01347 sucB 2-oxoglutarate 71.7 4.6 0.0001 43.6 4.3 30 129-158 48-77 (403)
164 TIGR00830 PTBA PTS system, glu 71.6 11 0.00023 34.1 5.9 19 174-193 83-101 (121)
165 PTZ00144 dihydrolipoamide succ 71.5 4.3 9.4E-05 44.1 4.0 30 129-158 92-121 (418)
166 cd00210 PTS_IIA_glc PTS_IIA, P 70.7 3.6 7.9E-05 37.3 2.7 28 132-159 78-105 (124)
167 PLN02528 2-oxoisovalerate dehy 69.8 5.5 0.00012 43.2 4.4 31 129-159 46-76 (416)
168 PRK09282 pyruvate carboxylase 69.6 6.7 0.00015 44.5 5.1 34 161-195 522-555 (592)
169 COG2190 NagE Phosphotransferas 69.4 14 0.00031 34.8 6.5 29 132-160 85-113 (156)
170 TIGR00830 PTBA PTS system, glu 69.4 3.9 8.5E-05 36.9 2.6 28 132-159 78-105 (121)
171 PF07247 AATase: Alcohol acety 68.1 51 0.0011 35.7 11.5 38 345-389 252-289 (480)
172 PF02666 PS_Dcarbxylase: Phosp 68.1 8.9 0.00019 37.2 5.0 57 133-192 145-202 (202)
173 COG1566 EmrA Multidrug resista 68.0 6.8 0.00015 41.6 4.5 33 162-195 54-86 (352)
174 TIGR02712 urea_carbox urea car 66.6 7.4 0.00016 47.8 5.0 34 161-195 1132-1165(1201)
175 COG0508 AceF Pyruvate/2-oxoglu 66.4 6.9 0.00015 42.3 4.3 33 129-161 50-82 (404)
176 COG2190 NagE Phosphotransferas 66.0 13 0.00029 35.0 5.5 23 170-193 86-108 (156)
177 PF00358 PTS_EIIA_1: phosphoen 65.4 2.7 5.8E-05 38.5 0.8 28 132-159 82-109 (132)
178 TIGR01995 PTS-II-ABC-beta PTS 63.8 8.6 0.00019 43.8 4.5 29 132-160 542-570 (610)
179 TIGR02645 ARCH_P_rylase putati 61.2 14 0.0003 41.0 5.4 43 153-196 405-471 (493)
180 PRK12999 pyruvate carboxylase; 61.0 11 0.00023 46.2 4.9 33 162-195 1077-1109(1146)
181 TIGR01349 PDHac_trf_mito pyruv 60.5 11 0.00023 41.2 4.4 30 130-159 48-78 (435)
182 PRK09824 PTS system beta-gluco 58.0 18 0.00039 41.4 5.8 28 132-159 558-585 (627)
183 TIGR01042 V-ATPase_V1_A V-type 56.3 21 0.00046 40.4 5.9 54 139-195 123-179 (591)
184 PRK11892 pyruvate dehydrogenas 55.0 14 0.0003 40.7 4.2 30 129-158 50-80 (464)
185 COG1155 NtpA Archaeal/vacuolar 54.5 28 0.00061 38.9 6.3 57 140-198 122-180 (588)
186 COG0157 NadC Nicotinate-nucleo 54.4 12 0.00026 38.5 3.3 23 134-156 64-86 (280)
187 PRK04350 thymidine phosphoryla 52.8 23 0.0005 39.3 5.4 42 154-196 398-463 (490)
188 cd01134 V_A-ATPase_A V/A-type 52.5 36 0.00079 36.4 6.6 54 139-195 54-110 (369)
189 TIGR03327 AMP_phos AMP phospho 52.0 23 0.0005 39.4 5.2 41 155-196 408-472 (500)
190 PRK03934 phosphatidylserine de 51.9 22 0.00049 36.1 4.8 54 134-192 211-264 (265)
191 PF01551 Peptidase_M23: Peptid 51.8 24 0.00052 29.5 4.3 56 130-195 19-74 (96)
192 TIGR03309 matur_yqeB selenium- 51.7 19 0.0004 36.7 4.1 33 161-195 164-196 (256)
193 TIGR02644 Y_phosphoryl pyrimid 51.6 25 0.00054 38.2 5.3 41 155-196 327-398 (405)
194 cd06255 M14_ASTE_ASPA_like_5 A 51.3 23 0.00049 36.5 4.8 35 161-197 231-265 (293)
195 TIGR02643 T_phosphoryl thymidi 51.0 23 0.00051 38.7 5.0 38 157-195 335-403 (437)
196 PRK11856 branched-chain alpha- 49.1 22 0.00047 38.3 4.4 31 130-160 51-81 (411)
197 cd06253 M14_ASTE_ASPA_like_3 A 48.6 21 0.00045 36.9 4.1 34 161-196 229-262 (298)
198 KOG0369 Pyruvate carboxylase [ 48.3 15 0.00032 42.1 3.0 31 164-195 1109-1139(1176)
199 PRK14844 bifunctional DNA-dire 48.3 29 0.00064 45.5 5.9 20 137-156 2423-2442(2836)
200 PRK06078 pyrimidine-nucleoside 48.2 28 0.0006 38.1 5.1 41 155-196 329-400 (434)
201 PRK05820 deoA thymidine phosph 47.7 29 0.00062 38.1 5.1 39 157-196 336-405 (440)
202 COG4072 Uncharacterized protei 47.7 36 0.00079 31.5 4.9 32 167-199 97-128 (161)
203 cd06251 M14_ASTE_ASPA_like_1 A 47.6 28 0.00061 35.6 4.8 36 159-196 217-252 (287)
204 cd06254 M14_ASTE_ASPA_like_4 A 47.5 25 0.00054 36.0 4.4 37 159-197 221-257 (288)
205 PRK08072 nicotinate-nucleotide 47.3 18 0.0004 37.1 3.4 21 136-156 66-86 (277)
206 cd01572 QPRTase Quinolinate ph 46.5 21 0.00045 36.5 3.6 25 132-156 56-80 (268)
207 cd06250 M14_PaAOTO_like An unc 45.9 30 0.00066 36.7 4.9 34 162-197 290-323 (359)
208 COG1038 PycA Pyruvate carboxyl 45.7 35 0.00075 40.1 5.4 31 164-195 1082-1112(1149)
209 PRK12784 hypothetical protein; 45.5 31 0.00067 28.9 3.7 29 132-160 51-79 (84)
210 PLN02744 dihydrolipoyllysine-r 45.3 22 0.00048 39.9 3.9 30 129-158 160-190 (539)
211 TIGR02643 T_phosphoryl thymidi 45.3 17 0.00036 39.8 2.8 28 129-156 375-402 (437)
212 PRK05820 deoA thymidine phosph 44.2 18 0.00038 39.7 2.8 30 128-157 375-404 (440)
213 TIGR02994 ectoine_eutE ectoine 43.8 30 0.00065 36.3 4.4 35 160-196 254-288 (325)
214 cd06252 M14_ASTE_ASPA_like_2 A 43.4 44 0.00094 34.8 5.5 36 159-196 242-277 (316)
215 TIGR00999 8a0102 Membrane Fusi 42.9 34 0.00073 33.7 4.5 26 131-156 95-120 (265)
216 PRK06543 nicotinate-nucleotide 42.9 24 0.00052 36.4 3.4 22 135-156 66-87 (281)
217 cd01573 modD_like ModD; Quinol 42.7 24 0.00052 36.1 3.4 23 134-156 56-78 (272)
218 PRK05742 nicotinate-nucleotide 42.6 24 0.00052 36.3 3.4 21 136-156 68-88 (277)
219 TIGR02645 ARCH_P_rylase putati 42.2 22 0.00048 39.5 3.2 32 126-157 439-470 (493)
220 PRK04350 thymidine phosphoryla 41.7 23 0.0005 39.3 3.3 32 126-157 431-462 (490)
221 cd01568 QPRTase_NadC Quinolina 41.6 25 0.00054 35.8 3.3 24 133-156 56-79 (269)
222 KOG0238 3-Methylcrotonyl-CoA c 41.5 22 0.00047 39.6 3.0 32 164-196 604-635 (670)
223 PRK06096 molybdenum transport 41.4 26 0.00056 36.2 3.4 21 136-156 63-83 (284)
224 PRK10255 PTS system N-acetyl g 41.0 47 0.001 38.2 5.7 41 149-193 526-601 (648)
225 PRK03140 phosphatidylserine de 41.0 31 0.00067 35.0 3.9 51 140-192 207-257 (259)
226 PRK07428 nicotinate-nucleotide 40.8 27 0.00058 36.2 3.4 22 135-156 73-94 (288)
227 TIGR03327 AMP_phos AMP phospho 40.7 24 0.00051 39.3 3.2 32 126-157 440-471 (500)
228 PRK06078 pyrimidine-nucleoside 40.6 22 0.00047 39.0 2.8 30 130-159 372-401 (434)
229 TIGR02644 Y_phosphoryl pyrimid 40.3 23 0.0005 38.4 2.9 29 130-158 370-398 (405)
230 PRK10255 PTS system N-acetyl g 39.9 39 0.00084 38.9 4.8 29 132-160 578-606 (648)
231 PRK06978 nicotinate-nucleotide 39.8 29 0.00062 36.1 3.4 22 135-156 83-104 (294)
232 COG0213 DeoA Thymidine phospho 39.7 53 0.0011 35.8 5.4 42 154-196 329-401 (435)
233 PRK09016 quinolinate phosphori 39.7 29 0.00062 36.1 3.4 21 136-156 87-107 (296)
234 PRK05848 nicotinate-nucleotide 39.5 29 0.00063 35.6 3.4 21 136-156 60-80 (273)
235 PRK07896 nicotinate-nucleotide 38.9 30 0.00065 35.9 3.4 22 135-156 77-98 (289)
236 TIGR01995 PTS-II-ABC-beta PTS 38.8 55 0.0012 37.4 5.8 57 132-193 470-565 (610)
237 PLN02716 nicotinate-nucleotide 38.7 30 0.00065 36.2 3.4 22 135-156 79-100 (308)
238 PRK04192 V-type ATP synthase s 38.3 67 0.0014 36.6 6.2 57 139-198 123-182 (586)
239 PRK06106 nicotinate-nucleotide 38.2 31 0.00067 35.6 3.4 23 134-156 70-92 (281)
240 PRK09824 PTS system beta-gluco 37.8 55 0.0012 37.6 5.6 58 131-193 485-581 (627)
241 TIGR00078 nadC nicotinate-nucl 37.7 32 0.0007 35.1 3.4 21 136-156 56-76 (265)
242 TIGR00163 PS_decarb phosphatid 37.7 32 0.0007 34.4 3.3 48 143-192 189-236 (238)
243 PRK08385 nicotinate-nucleotide 37.3 33 0.00071 35.4 3.4 22 135-156 59-80 (278)
244 PF06898 YqfD: Putative stage 36.4 51 0.0011 35.3 4.8 52 132-191 167-225 (385)
245 PF09891 DUF2118: Uncharacteri 36.4 30 0.00065 32.5 2.7 44 145-200 75-118 (150)
246 TIGR01334 modD putative molybd 36.2 35 0.00076 35.1 3.4 22 135-156 61-82 (277)
247 PF07831 PYNP_C: Pyrimidine nu 35.8 45 0.00098 27.4 3.4 29 167-198 30-58 (75)
248 TIGR01043 ATP_syn_A_arch ATP s 35.0 78 0.0017 36.0 6.1 53 140-195 121-176 (578)
249 COG3608 Predicted deacylase [G 33.8 73 0.0016 33.7 5.3 43 150-196 247-289 (331)
250 PF06898 YqfD: Putative stage 33.6 55 0.0012 35.1 4.5 24 131-154 196-226 (385)
251 PF01551 Peptidase_M23: Peptid 32.5 37 0.00079 28.4 2.4 24 135-158 52-75 (96)
252 PRK14698 V-type ATP synthase s 31.9 86 0.0019 38.1 6.1 69 120-197 106-181 (1017)
253 PRK00044 psd phosphatidylserin 31.4 51 0.0011 34.0 3.7 58 134-194 224-286 (288)
254 PRK08662 nicotinate phosphorib 28.8 51 0.0011 34.9 3.3 24 132-157 69-92 (343)
255 cd05789 S1_Rrp4 S1_Rrp4: Rrp4 28.5 48 0.001 27.1 2.5 55 138-195 2-67 (86)
256 PF05896 NQRA: Na(+)-transloca 28.5 45 0.00098 34.0 2.7 29 163-192 31-59 (257)
257 KOG0557 Dihydrolipoamide acety 28.3 53 0.0012 36.1 3.3 30 166-196 49-78 (470)
258 cd06910 M14_ASTE_ASPA_like_7 A 27.9 83 0.0018 31.9 4.5 44 141-192 227-271 (272)
259 TIGR02876 spore_yqfD sporulati 27.2 98 0.0021 33.3 5.1 47 139-185 208-254 (382)
260 PF02749 QRPTase_N: Quinolinat 27.2 1.2E+02 0.0025 25.4 4.6 35 159-194 17-67 (88)
261 CHL00117 rpoC2 RNA polymerase 26.3 71 0.0015 39.9 4.2 36 137-172 405-448 (1364)
262 PRK07188 nicotinate phosphorib 26.0 74 0.0016 33.9 3.8 23 135-157 72-94 (352)
263 PF13375 RnfC_N: RnfC Barrel s 25.7 1.1E+02 0.0025 26.6 4.3 47 145-193 14-61 (101)
264 PRK06559 nicotinate-nucleotide 25.6 66 0.0014 33.4 3.3 24 133-156 70-95 (290)
265 PRK11536 6-N-hydroxylaminopuri 24.8 57 0.0012 32.6 2.6 71 120-193 78-163 (223)
266 PF03869 Arc: Arc-like DNA bin 24.7 3.1E+02 0.0068 20.7 6.0 49 338-395 2-50 (50)
267 PRK02259 aspartoacylase; Provi 22.4 43 0.00093 34.4 1.2 49 139-191 231-281 (288)
268 COG3453 Uncharacterized protei 22.4 79 0.0017 28.8 2.7 34 259-294 48-81 (130)
269 COG0213 DeoA Thymidine phospho 22.2 73 0.0016 34.7 2.9 28 130-157 373-400 (435)
270 PTZ00403 phosphatidylserine de 21.6 1.1E+02 0.0024 32.6 4.2 59 132-194 280-339 (353)
271 PRK10871 nlpD lipoprotein NlpD 21.5 51 0.0011 34.7 1.6 23 174-197 271-293 (319)
272 cd00516 PRTase_typeII Phosphor 21.4 91 0.002 31.5 3.4 25 132-156 48-72 (281)
273 smart00226 LMWPc Low molecular 21.4 64 0.0014 28.8 2.0 31 257-292 42-72 (140)
274 COG2258 Uncharacterized protei 21.0 1.1E+02 0.0023 30.5 3.5 70 121-193 76-160 (210)
275 KOG0368 Acetyl-CoA carboxylase 20.8 1.2E+02 0.0026 38.2 4.6 50 143-193 667-716 (2196)
276 KOG1668 Elongation factor 1 be 20.6 53 0.0011 32.9 1.4 27 137-163 181-207 (231)
No 1
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=100.00 E-value=3.4e-100 Score=822.34 Aligned_cols=483 Identities=70% Similarity=0.998 Sum_probs=391.2
Q ss_pred cchhhhhhhhhhhhhhhhhccccccceEEeecCCCcC---CcccceeeecceeccccceeccccCCccceeeeeeeccce
Q 010531 2 AYASHIINHSKKLKNVSNLLWHENAVLVRWFSNDAVS---SRDDLLKIHRHVYVPVESERVINSSAISSVSSVGVFKKKF 78 (508)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (508)
+||+||||||||||+++|+|+|||+.+||||||++|+ |++++.+.+++. ...+.+++ ..+++++|++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~------~~~~~~~~~~~~ 72 (539)
T PLN02744 1 AYASRIINHSKKLRNVSNLLRREHAALVRYFSNSTRSSLGKGDDIAKRRGYP--PLERRSQP------KVSSLGLFGSNI 72 (539)
T ss_pred CchHHHhhhchhhcchHHHhcccccceEEEecCCCccCcccccchhhcccCC--cccccccc------ccccccccccch
Confidence 5899999999999999999999999999999999999 999999877764 33333333 456788999999
Q ss_pred eeeccccCCccccccccccccccccccccccccCCCCCCceEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEec
Q 010531 79 CSVARKAGSPIAGSFLNRGFACSKVHLKRGFSSDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (508)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~f~~~~~~~~~~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetd 158 (508)
||+.++.++|+....++..++|+++.+.|+|++.+++|.|++|.||+||++|+||+|.+|+|++||.|++||+||+||||
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ei~mP~lg~~m~eg~I~~W~vkeGD~V~~g~~l~eVETD 152 (539)
T PLN02744 73 SRTARKNGSPMTGSGLFKSLSSSQMQSARGFSSSSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETD 152 (539)
T ss_pred hhhhhhcCCccccchhhhccccccccccccccccccCCCCceEeCCCCCCCcceeEEEEEEecCCCEecCCCeeEEEeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEeccCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCC
Q 010531 159 KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPIST 238 (508)
Q Consensus 159 Ka~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 238 (508)
|+++||+||.+|+|.+|++++|++.|+||++|+++.+++++..+++++.++..+.+..+.+ .++++.+.....+.+...
T Consensus 153 Ka~~evea~~~G~l~ki~~~eG~~~v~vG~~ia~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 231 (539)
T PLN02744 153 KATVEMECMEEGYLAKIVKGDGAKEIKVGEVIAITVEEEEDIGKFKDYKPSSSAAPAAPKA-KPSPPPPKEEEVEKPASS 231 (539)
T ss_pred cceeEecCCCCcEEEEEEecCCCcccCCCCEEEEEccCccccccccccccccccccccccc-cCCCCCcccccccCCCCC
Confidence 9999999999999999999999536999999998876554433222211110000000000 000000000000001111
Q ss_pred CCCCCCCC-CCCCCCCccccChhHHHHHHHcCCCCCcccccCCCCccchhhHHHHHHhcCCCCCCCCCCCCCCCCCCCcc
Q 010531 239 SEPKASKP-SAASPEDRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGKEVPAKAPKGKDVAAPALDY 317 (508)
Q Consensus 239 ~~~~~~~~-~~~~~~~~v~aSP~aRrLA~e~gIDLs~V~GTGp~GRItk~DV~~~~~~~~~~~~a~~~a~~~~~~~~~~~ 317 (508)
+.+....+ .....+.++++||+||+||+|+||||+.|+||||+|||+++||++|++......+++++ .....+...+
T Consensus 232 ~~~~~~~~~~~~~~~~~i~ASP~aRrLAre~GVDLs~V~GTGp~GRI~k~DV~a~~~~~~~~~~~~~~--~~~~~~~~~~ 309 (539)
T PLN02744 232 PEPKASKPSAPPSSGDRIFASPLARKLAEDNNVPLSSIKGTGPDGRIVKADIEDYLASGGKGATAPPS--TDSKAPALDY 309 (539)
T ss_pred cccccccccccccccccccCCchhHHHHHHcCCCHHHCCCCCCCCcccHHHHHHHhhccccccCCCCC--cccCCCCCcc
Confidence 11100000 01112346889999999999999999999999999999999999998542211111100 0001111124
Q ss_pred cccCCchhhHHHHHhhhhccCCcceEEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCcee
Q 010531 318 VDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSW 397 (508)
Q Consensus 318 ~~ipls~iRkaiA~~m~~S~~~iP~~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~ 397 (508)
+++|+++|||+||++|++|++++||||++.++|+++|+++|+++|+..+..+|.|+||++||+||+++||++||.+|++|
T Consensus 310 ~~vpls~~Rk~IA~~m~~S~~~iPh~t~~~evdvt~L~~lR~~l~~~~~~~~g~kls~~~~liKA~a~AL~~~P~lNa~~ 389 (539)
T PLN02744 310 TDIPNTQIRKVTASRLLQSKQTIPHYYLTVDTRVDKLMALRSQLNSLQEASGGKKISVNDLVIKAAALALRKVPQCNSSW 389 (539)
T ss_pred ccccchhHHHHHHHHHHHHHhhCCeEEEEEEEEcHHHHHHHHHHHHHhhhcccCccCHHHHHHHHHHHHHHhCcHhheee
Confidence 57899999999999999999999999999999999999999999976555558999999999999999999999999999
Q ss_pred eCCeeEEcCCccEEEEeecCCceEeeeecccccCCHHHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCcccccc
Q 010531 398 ADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLSIL 477 (508)
Q Consensus 398 ~~~~I~~~~~vnIgVAVdt~~GLvvPVIrdAd~ksL~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fGi~ 477 (508)
+++.|+++++|||||||++++||+|||||||++|+|.||++++++|+++||+|+|+++||+|||||||| +||.||+.
T Consensus 390 ~~~~i~~~~~vnIgvAV~t~~GL~vPVIr~ad~~sl~eIa~ei~~L~~kAr~~kL~~~dl~GGTfTISN---lGg~~G~~ 466 (539)
T PLN02744 390 TDDYIRQYHNVNINVAVQTENGLYVPVVKDADKKGLSTIAEEVKQLAQKARENSLKPEDYEGGTFTVSN---LGGPFGIK 466 (539)
T ss_pred ccCcEEEeCCcceEEEEECCCCeEECcCCCcccCCHHHHHHHHHHHHHHHHcCCCChhhcCCceEEEeC---CCcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999 98339999
Q ss_pred ccceee---ehhhhcccce--eeEEe
Q 010531 478 LNLAFL---QLDLLRKGLS--LAWVQ 498 (508)
Q Consensus 478 ~~~Pil---~~~~~~~g~~--~~w~~ 498 (508)
+|+||+ +.++++.|.- .+|+.
T Consensus 467 ~ftpIInpPqvaILgvG~i~~~pvv~ 492 (539)
T PLN02744 467 QFCAIINPPQSAILAVGSAEKRVIPG 492 (539)
T ss_pred eeeccccCCcEEEEEcccceeEeEEe
Confidence 999998 7778877774 13663
No 2
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=100.00 E-value=1.4e-79 Score=636.13 Aligned_cols=395 Identities=47% Similarity=0.732 Sum_probs=324.8
Q ss_pred ccccccccccccccCCCCCCceEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEe
Q 010531 98 FACSKVHLKRGFSSDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVK 177 (508)
Q Consensus 98 ~~~~~~~~~r~f~~~~~~~~~~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~ 177 (508)
-+|+.+.+.+.+++...+|.|.+|.||.|+++|+||+|++|.++|||.+++||+||||||||++|++|++++|||.||++
T Consensus 18 ~~~~~~~~~~~~~~a~~~p~h~~i~MPALSPTMeeGnIvsW~kKeGdkls~GDvl~EVETDKAtmd~E~~ddGyLAKILi 97 (470)
T KOG0557|consen 18 KSCTSVKTKCAHHSASKLPAHKTFSMPALSPTMEEGNIVSWKKKEGDKLSAGDVLLEVETDKATMDVEAQDDGYLAKILI 97 (470)
T ss_pred chhcccchhhhccccccCCcceEeecCCCCccccCCceeeEeeccCCccCCCceEEEEecccceeeeeeccCCeeeeeee
Confidence 34444444555555555999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCeeeecCCEEEEEeccCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCcccc
Q 010531 178 GDGSKEIKVGEVIAITVEEEEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFA 257 (508)
Q Consensus 178 ~eG~~~v~vG~~la~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~a 257 (508)
+||.+.|+||++||+++|.++|++.++.++++++..+..+.++. .++++.....+.|.+.+.+..+.+.....++|+++
T Consensus 98 ~EGskdvpVGk~Iaiive~e~di~~~k~~k~~~s~~~~~~~~~~-~~app~~~~~~~Ps~~~~~~~~~p~~~~~~~r~~a 176 (470)
T KOG0557|consen 98 EEGSKDVPVGKPIAIIVEDEDDIAAFKLPKDEASSGEQSPSAAP-PPAPPKVAKPEAPSAPSKPSTSQPVKAKNGGRVFA 176 (470)
T ss_pred ccCcccccCCCceEEEecccccHHHhhccccccccccCCcccCC-CCCCCcccccCCCCCCccccccccCCcCCCCceec
Confidence 99966999999999999999999999887764222221122111 11111111112222222222222222223569999
Q ss_pred ChhHHHHHHHcCCCCCcccccCCCCccchhhHHHHHHhcCCCCCCC------CCCCCCCCCCCCcccccCCchhhHHHHH
Q 010531 258 SPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGKEVPAK------APKGKDVAAPALDYVDIPHSQIRKITAS 331 (508)
Q Consensus 258 SP~aRrLA~e~gIDLs~V~GTGp~GRItk~DV~~~~~~~~~~~~a~------~~a~~~~~~~~~~~~~ipls~iRkaiA~ 331 (508)
||+||+||+|+|+|+++|+||||+|||++.||+.|++......... +++...+..+...|+++|++.||+.|++
T Consensus 177 sP~Ak~la~e~~l~ls~i~gtGP~Gri~k~Di~~~v~~~~~k~~~~~~~~~~~~~~~a~~~~~~~~~diP~s~mr~viak 256 (470)
T KOG0557|consen 177 SPLAKKLAEEKGLELSSIPGTGPHGRILKGDIEKHVGSGKKKSAKAPKASAPPPAPAAPPVSLPGYEDIPVSNMRRVIAK 256 (470)
T ss_pred ChHHHHHHHHhCCccccCcCcCCCceeehhhHHHhhcccccccccCCCccCCCcCccCCcCCCCcccccccchhhhhhhh
Confidence 9999999999999999999999999999999999998644322111 1111111222345899999999999999
Q ss_pred hhhhccCCcceEEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceeeC-CeeEEcCCccE
Q 010531 332 RLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD-EYIRQFKNVNI 410 (508)
Q Consensus 332 ~m~~S~~~iP~~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~~-~~I~~~~~vnI 410 (508)
||.+|+++|||+|++.+++++.|+++|+.+| ++ .++.++|+++||+||++.||+++|++|++|++ +.|+++++|||
T Consensus 257 rl~eSk~~IPh~yvt~~~~~d~ll~~r~~ln--~~-~~~~~vsvndliiKAaa~al~~vPevNs~w~~~~~i~~~~~Vdi 333 (470)
T KOG0557|consen 257 RLLESKQTIPHYYVTVDVNLDKLLALREKLN--FE-KSIKKVSLNDLIAKAAALALAKVPEVNSSWMDELVIRQLSSVDI 333 (470)
T ss_pred hhhhhhcCCCeEEEeeeeehHHHHHHHHHhh--hc-ccCcccchhHHHHHHHHHHHhcCCcccceecCCccccccCcCCh
Confidence 9999999999999999999999999999998 23 35899999999999999999999999999998 79999999999
Q ss_pred EEEeecCCceEeeeecccccCCHHHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCccccccccceee---ehhh
Q 010531 411 NVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLSILLNLAFL---QLDL 487 (508)
Q Consensus 411 gVAVdt~~GLvvPVIrdAd~ksL~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fGi~~~~Pil---~~~~ 487 (508)
++||+|++||++|+|+|++.++|.+|+.++++|+++||.|+|.|+||+|||||||| ||| ||+..|+.|+ +.|+
T Consensus 334 svAVat~~GLitPii~na~~kgl~~is~~vkel~~kAr~~kL~Pee~qgGtftiSN---LGm-f~V~~F~AiinPpq~~I 409 (470)
T KOG0557|consen 334 SVAVATPNGLITPIIQNADAKGLSTISSKVKELAQKAREGKLQPEEFQGGTFTLSN---LGM-FGVDMFTAIINPPQADI 409 (470)
T ss_pred hheeeccCcccchhhhhcccccHHHHHHHHHHHHHHHhhccCCcccccCCceeHhh---ccC-cCccccccccCCchhhh
Confidence 99999999999999999999999999999999999999999999999999999999 999 9999999998 8889
Q ss_pred hcccceeeEEeec
Q 010531 488 LRKGLSLAWVQIS 500 (508)
Q Consensus 488 ~~~g~~~~w~~~~ 500 (508)
+++|..-.=+|.|
T Consensus 410 Lavg~~~~~~v~d 422 (470)
T KOG0557|consen 410 LAVGAATPSVVPD 422 (470)
T ss_pred hhcccCccccccC
Confidence 9999884355644
No 3
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=100.00 E-value=2.5e-75 Score=640.93 Aligned_cols=373 Identities=26% Similarity=0.377 Sum_probs=286.8
Q ss_pred CCceEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 116 PPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 116 ~~~~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
+..++|.||+||++|+||+|.+|+|++||.|++||+||+|||||+++||+||++|+|.+|++++|+ .|++|++|+++.+
T Consensus 133 ~~~~~~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~s~~~G~v~~i~v~~G~-~v~vG~~l~~i~~ 211 (590)
T TIGR02927 133 GAATDIEMPELGESVTEGTITQWLKAVGDKIEVDEPILEVSTDKVDTEIPSPVAGTILEILAEEDD-TVDVGAEIAKIGD 211 (590)
T ss_pred CCceEEEcCCCCCCcceEEEEEEEeCCCCEecCCCEeEEEEecceeeEEcCCCCeEEEEEecCCCC-EecCCCEEEEEec
Confidence 345799999999999999999999999999999999999999999999999999999999999997 9999999999865
Q ss_pred cCCccccccCCCCCCCCCCCCCCCCCCCCCCCCC-CccC-CCC--CCCCCCCC-CC-CCCCCCCccccChhHHHHHHHcC
Q 010531 196 EEEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQ-EEVE-KPI--STSEPKAS-KP-SAASPEDRLFASPVARNLAEEHN 269 (508)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-~~~~-~~~--~~~~~~~~-~~-~~~~~~~~v~aSP~aRrLA~e~g 269 (508)
++++........+.......++.+..+...+... .... .+. ....+... .+ .....+.++++||+|||||+|+|
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~g 291 (590)
T TIGR02927 212 AGAAAAEDAKAEEEAEAKAEAKPEEKPDPKKDEAAEPEPDEPEAEKAEKKEEKAAAAPAANSDGSPYVTPLVRKLAAEHG 291 (590)
T ss_pred CCCccccccccccccccccccccCCCCccccccccccccccccccccccccccccccccccccCcccCCchhHHHHHHcC
Confidence 4433211000000000000000000000000000 0000 000 00000000 00 00112347889999999999999
Q ss_pred CCCCcccccCCCCccchhhHHHHHHhcCC--CCCCC-----CCCCC--CCC--CC---CCcccccCCchhhHHHHHhhhh
Q 010531 270 VSLSSIKGTGPNGLIVKADIEDYLASRGK--EVPAK-----APKGK--DVA--AP---ALDYVDIPHSQIRKITASRLLF 335 (508)
Q Consensus 270 IDLs~V~GTGp~GRItk~DV~~~~~~~~~--~~~a~-----~~a~~--~~~--~~---~~~~~~ipls~iRkaiA~~m~~ 335 (508)
|||++|+|||++|||+++||++|+..... ..+.. .++.. ... .+ ...++.+||++|||+||++|++
T Consensus 292 vdl~~v~GtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~rk~ia~~m~~ 371 (590)
T TIGR02927 292 IDLNSVKGTGIGGRIRKQDVLAAAEGAKAAAEAPAAEAAAAAPAAAAAASASPAPAKAHLRGTTQKANRIREITAKKTRE 371 (590)
T ss_pred CCHHHCCCCCCCCeEeHHHHHHHHhccccccccccccccccCccccccccCCCccccccccCceeeccHHHHHHHHHHHH
Confidence 99999999999999999999999854211 10110 00000 000 00 0124567999999999999999
Q ss_pred ccCCcceEEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceeeC--CeeEEcCCccEEEE
Q 010531 336 SKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD--EYIRQFKNVNINVA 413 (508)
Q Consensus 336 S~~~iP~~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~~--~~I~~~~~vnIgVA 413 (508)
||+++||||++.++|+++|+++|+++|+.....+|.||||++||+||++.||++||.+|++|++ +.|++|+++|||||
T Consensus 372 S~~~iPh~~~~~evdvt~l~~~R~~l~~~~~~~~~~kls~~~~iiKA~a~AL~~~P~~Na~~~~~~~~i~~~~~vnigvA 451 (590)
T TIGR02927 372 ALQASAQLTQLHEVDMTKIAALRARAKAAFAEKEGVNLTFLPFFAKAVIDALKAHPNVNASYNADTKEITYHAAEHLGFA 451 (590)
T ss_pred HhccCCeEEEEeEEEcHHHHHHHHHHHhhhHHhcCCcccHHHHHHHHHHHHHHhCCHhheEEecCCCEEEEeCCccEEEE
Confidence 9999999999999999999999999997554445899999999999999999999999999974 47999999999999
Q ss_pred eecCCceEeeeecccccCCHHHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCccccccccceee---ehhhhcc
Q 010531 414 VQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLSILLNLAFL---QLDLLRK 490 (508)
Q Consensus 414 Vdt~~GLvvPVIrdAd~ksL~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fGi~~~~Pil---~~~~~~~ 490 (508)
|++++||+||||||+++|+|.+|++++++|++|||+|+|+++||+|||||||| ||| ||+.+|+||+ ++++++.
T Consensus 452 v~t~~GL~vPvIk~a~~~sl~~ia~~i~~l~~kAr~gkL~p~e~~GgTfTISN---lG~-~G~~~~tpIIn~PqvaILgv 527 (590)
T TIGR02927 452 VDTDAGLLSPVIHNAGDLSLGEIAKAIADIAARARNGKLKPDDLAGGTFTITN---IGS-EGALFDTPILIPPQAAILGT 527 (590)
T ss_pred EECCCCcEecccCCcccCCHHHHHHHHHHHHHHHHcCCCChHHhCCCeEEEEC---CCC-CCccceeceecCCCeEEEEc
Confidence 99999999999999999999999999999999999999999999999999999 999 9999999999 7777777
Q ss_pred cce
Q 010531 491 GLS 493 (508)
Q Consensus 491 g~~ 493 (508)
|+-
T Consensus 528 G~i 530 (590)
T TIGR02927 528 GAI 530 (590)
T ss_pred ccc
Confidence 765
No 4
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=100.00 E-value=2e-74 Score=608.91 Aligned_cols=345 Identities=29% Similarity=0.413 Sum_probs=282.1
Q ss_pred eEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEeccCC
Q 010531 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (508)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~~ 198 (508)
++|+||+||++|+||+|.+|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+ .|++|++|+++.++++
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~Gd~l~~vEtdK~~~ei~a~~~G~v~~i~v~~G~-~V~~G~~l~~i~~~~~ 81 (407)
T PRK05704 3 VEIKVPTLPESVTEATIATWHKKPGDAVKRDEVLVEIETDKVVLEVPAPAAGVLSEILAEEGD-TVTVGQVLGRIDEGAA 81 (407)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecCceeEEecCCCEEEEEEEeCCCC-EeCCCCEEEEEecCCc
Confidence 599999999999999999999999999999999999999999999999999999999999997 8999999999864432
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHHHcCCCCCccccc
Q 010531 199 DIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGT 278 (508)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~aRrLA~e~gIDLs~V~GT 278 (508)
+... .++ +...++. .+ .+.. .+... . ... ..+++||+||+||+|+||||++|+||
T Consensus 82 ~~~~----~~~-------~~~~~~~-~~-------~~~~--~~~~~--~-~~~-~~~~asP~aR~lA~e~gidl~~v~gt 136 (407)
T PRK05704 82 AGAA----AAA-------AAAAAAA-AA-------APAQ--AQAAA--A-AEQ-SNDALSPAARKLAAENGLDASAVKGT 136 (407)
T ss_pred cccc----CCC-------CCCCCCC-CC-------CCCC--CCCCc--c-CCC-ccccCCchhhhHHhhcCCChhhCCCC
Confidence 2110 000 0000000 00 0000 00000 0 011 13579999999999999999999999
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCCCCCCCC-C--CCCCcccccCCchhhHHHHHhhhhccCCcceEEEeeeecHHHHH
Q 010531 279 GPNGLIVKADIEDYLASRGKEVPAKAPKGKDV-A--APALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLM 355 (508)
Q Consensus 279 Gp~GRItk~DV~~~~~~~~~~~~a~~~a~~~~-~--~~~~~~~~ipls~iRkaiA~~m~~S~~~iP~~~l~~~vdvt~L~ 355 (508)
|++|||+++||++|++........++...... + ......+.+||++|||+||++|++|++++||||+..++|+++|+
T Consensus 137 G~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vpls~~rk~ia~~m~~S~~~iPh~~~~~evd~~~l~ 216 (407)
T PRK05704 137 GKGGRVTKEDVLAALAAAAAAPAAPAAAAPAAAPAPLGARPEERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVM 216 (407)
T ss_pred CCCCcccHHHHHHHhhcccccCCCCCCCCCcCCCccccCCcceEeeChHHHHHHHHHHHHHhhcCCeEEEEEEEeHHHHH
Confidence 99999999999999753211110000000000 0 01111245799999999999999999999999999999999999
Q ss_pred HHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceeeCCeeEEcCCccEEEEeecCCceEeeeecccccCCHHH
Q 010531 356 GLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLST 435 (508)
Q Consensus 356 ~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~~~~I~~~~~vnIgVAVdt~~GLvvPVIrdAd~ksL~e 435 (508)
++|+++++.+....|.|+||++||+||+++||++||.+|++|+++.+++++++||||||++++||+|||||||++|||.|
T Consensus 217 ~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~i~~~~~~nIgiAv~~~~GLivPVI~~a~~~sl~e 296 (407)
T PRK05704 217 DLRKQYKDAFEKKHGVKLGFMSFFVKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAE 296 (407)
T ss_pred HHHHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhhcEEcCCeEEEcCCCCeEEEEECCCceEeCcCCCcccCCHHH
Confidence 99999987555445899999999999999999999999999999899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCccccccccceee---ehhhhcccce
Q 010531 436 IAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLSILLNLAFL---QLDLLRKGLS 493 (508)
Q Consensus 436 Ia~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fGi~~~~Pil---~~~~~~~g~~ 493 (508)
|++++++|++|||+|+|+++||+|||||||| +|+ ||+.+|+||+ ++++++.|.-
T Consensus 297 Ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSN---lG~-~G~~~~tpiIn~pq~aILgvG~i 353 (407)
T PRK05704 297 IEKKIAELAKKARDGKLSIEELTGGTFTITN---GGV-FGSLMSTPIINPPQSAILGMHKI 353 (407)
T ss_pred HHHHHHHHHHHHHcCCCChHHcCCceEEEec---CCc-ccccceeccccCCcEEEEEcccc
Confidence 9999999999999999999999999999999 999 9999999998 7777777764
No 5
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=100.00 E-value=4e-74 Score=605.61 Aligned_cols=345 Identities=28% Similarity=0.419 Sum_probs=282.6
Q ss_pred eEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEeccCC
Q 010531 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (508)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~~ 198 (508)
++|+||+||++|+||+|++|+|++||.|++||+|++|||||+++||+||++|+|.+|++++|+ .|++|++|+++.++++
T Consensus 1 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ei~a~~~G~v~~i~~~eG~-~v~vG~~l~~i~~~~~ 79 (403)
T TIGR01347 1 IEIKVPELAESITEGTVAEWHKKVGDTVKRDENIVEIETDKVVLEVPSPADGVLQEILFKEGD-TVESGQVLAILEEGND 79 (403)
T ss_pred CeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEEcceeeEEecCCCEEEEEEEeCCCC-EeCCCCEEEEEecCCC
Confidence 379999999999999999999999999999999999999999999999999999999999997 9999999999854322
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHHHcCCCCCccccc
Q 010531 199 DIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGT 278 (508)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~aRrLA~e~gIDLs~V~GT 278 (508)
. . +..+++ +.+. .+.+ . +. + ..+.+ . ..+.++++||+||+||+|+||||+.|+||
T Consensus 80 ~-~-------~~~~~~--~~~~--~~~~--~-~~--~-~~~~~-----~--~~~~~~~asP~aR~lA~e~gvdl~~v~gt 134 (403)
T TIGR01347 80 A-T-------AAPPAK--SGEE--KEET--P-AA--S-AAAAP-----T--AAANRPSLSPAARRLAKEHGIDLSAVPGT 134 (403)
T ss_pred C-c-------cccccc--ccCC--CCCC--C-CC--C-CCCCC-----c--CccccccCCchhhhHHHHcCCChhhCCCC
Confidence 1 0 000000 0000 0000 0 00 0 00000 0 11236779999999999999999999999
Q ss_pred CCCCccchhhHHHHHHhcCCCC-CCCCCCCCCCCCCCCcccccCCchhhHHHHHhhhhccCCcceEEEeeeecHHHHHHH
Q 010531 279 GPNGLIVKADIEDYLASRGKEV-PAKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGL 357 (508)
Q Consensus 279 Gp~GRItk~DV~~~~~~~~~~~-~a~~~a~~~~~~~~~~~~~ipls~iRkaiA~~m~~S~~~iP~~~l~~~vdvt~L~~l 357 (508)
|++|||+++||++|++.....+ ++..++...+..+....+.+|+++|||+||++|..||+++||||++.++|+++|+++
T Consensus 135 G~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pls~~r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~ 214 (403)
T TIGR01347 135 GVTGRVTKEDIIKKTEAPASAQAPAPAAAAKAPANFTRPEERVKMTRLRQRIAERLKEAQNSTAMLTTFNEVDMSAVMEL 214 (403)
T ss_pred CCCCcccHHHHHHhhhcccccCCCCCCcccCCccccCCCceEeeCcHHHHHHHHHHHHHhccCCEEEEEEEEEHHHHHHH
Confidence 9999999999999975321111 000000000000011134579999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceeeCCeeEEcCCccEEEEeecCCceEeeeecccccCCHHHHH
Q 010531 358 RNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIA 437 (508)
Q Consensus 358 R~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~~~~I~~~~~vnIgVAVdt~~GLvvPVIrdAd~ksL~eIa 437 (508)
|+++++.+...+|.++||++||+||++.||++||.+|++|+++.|++++++||||||++++||+||||||||+|+|.+|+
T Consensus 215 r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~i~~~~~vnIgvAv~~~~GL~vPVIr~ad~~sl~eIa 294 (403)
T TIGR01347 215 RKRYKEEFEKKHGVKLGFMSFFVKAVVAALKRFPEVNAEIDGDDIVYKDYYDISVAVSTDRGLVVPVVRNADRMSFADIE 294 (403)
T ss_pred HHHHHhhhHhhcCCCcCHHHHHHHHHHHHHHhCcHhheEEcCCEEEEcCCCCeEEEEECCCCeEECcCCCcccCCHHHHH
Confidence 99999765555589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCccccccccceee---ehhhhcccce
Q 010531 438 EEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLSILLNLAFL---QLDLLRKGLS 493 (508)
Q Consensus 438 ~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fGi~~~~Pil---~~~~~~~g~~ 493 (508)
+++++|++|||+|+|+++||+|||||||| +|+ ||+.+|+||+ +.++++.|.-
T Consensus 295 ~~~~~l~~~ar~gkL~~~d~~ggTfTISN---lG~-~G~~~~tpiin~pq~aILgvG~i 349 (403)
T TIGR01347 295 KEIADLGKKARDGKLTLEDMTGGTFTITN---GGV-FGSLMSTPIINPPQSAILGMHGI 349 (403)
T ss_pred HHHHHHHHHHHcCCCChhhcCCceEEEec---CCc-CcccceeccccCCceEEEecccc
Confidence 99999999999999999999999999999 999 9999999999 7778777774
No 6
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=100.00 E-value=1.6e-71 Score=591.54 Aligned_cols=364 Identities=46% Similarity=0.743 Sum_probs=280.6
Q ss_pred EEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCee-eecCCEEEEEeccCC
Q 010531 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKE-IKVGEVIAITVEEEE 198 (508)
Q Consensus 120 ~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~-v~vG~~la~i~~~~~ 198 (508)
+|.||+||++|+||+|.+|++++||.|++||+||+|||||++++|+||.+|+|.++++++|+ . |++|++|++|.++++
T Consensus 1 ~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vetdKa~~ei~a~~~G~l~~i~v~~g~-~~v~vG~~l~~i~~~~~ 79 (435)
T TIGR01349 1 KITMPALSPTMTTGNLAKWLKKEGDKVNPGDVIAEIETDKATMEFEAVEEGYLAKILVPEGT-KDVPVNKPIAVLVEEKE 79 (435)
T ss_pred CcccCCCCCCcceEEEEEEEeCCCCccCCCCEEEEEEecceeeEEcCCCCEEEEEEEECCCC-EEecCCCEEEEEeccCC
Confidence 37899999999999999999999999999999999999999999999999999999999997 8 999999999865433
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCC---CCC--CC-CCCCCCCccccChhHHHHHHHcCCCC
Q 010531 199 DIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEP---KAS--KP-SAASPEDRLFASPVARNLAEEHNVSL 272 (508)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~-~~~~~~~~v~aSP~aRrLA~e~gIDL 272 (508)
+..............+ ++..... .+..+...+.+...+.+ ... .. .....+.++++||+||+||+||||||
T Consensus 80 ~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~vR~lA~e~gvdl 156 (435)
T TIGR01349 80 DVADAFKNYKLESSAS-APKPSEI--APTAPPSAPKPSPAPQKQSPEPSSPAPLSDKESGDRIFASPLAKKLAKEKGIDL 156 (435)
T ss_pred cccccccccccccccc-CCCCccc--ccCCCCcCCCCCCCccccccccccccccccccccccccCCHHHHHHHHHcCCCH
Confidence 2210000000000000 0000000 00000000000000000 000 00 00112236789999999999999999
Q ss_pred CcccccCCCCccchhhHHHHHHhcCCCCCCC--CCCCC--CCCCC--CCcccccCCchhhHHHHHhhhhccCCcceEEEe
Q 010531 273 SSIKGTGPNGLIVKADIEDYLASRGKEVPAK--APKGK--DVAAP--ALDYVDIPHSQIRKITASRLLFSKQTIPHYYLT 346 (508)
Q Consensus 273 s~V~GTGp~GRItk~DV~~~~~~~~~~~~a~--~~a~~--~~~~~--~~~~~~ipls~iRkaiA~~m~~S~~~iP~~~l~ 346 (508)
+.|+|||++|||+++||++|++......+.+ .+... ....+ ....+.+||++|||+|+++|++|++++||||+.
T Consensus 157 ~~v~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ls~~rk~ia~~m~~S~~~ip~~~~~ 236 (435)
T TIGR01349 157 SAVAGSGPNGRIVKKDIESFVPQSPASANFQAAATTPATKKAAAPVSTGSYEDVPLSNIRKIIAKRLLESKQTIPHYYVS 236 (435)
T ss_pred hHCCCCCCCCceeHHHHHHHHhcccccCCCccccccccccccCCCccCCcceeecccHHHHHHHHHHHHHHhhCCeEEEE
Confidence 9999999999999999999986421111110 00000 00001 112346899999999999999999999999999
Q ss_pred eeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceeeCCeeEEcCCccEEEEeecCCceEeeeec
Q 010531 347 VDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIR 426 (508)
Q Consensus 347 ~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~~~~I~~~~~vnIgVAVdt~~GLvvPVIr 426 (508)
.++|+++|+++|+++++.... |.++||++||+||+++||++||.+|++|+++.|++|++|||||||++++||+|||||
T Consensus 237 ~evd~t~l~~~r~~~~~~~~~--~~klt~~~~l~kA~a~AL~~~P~~Na~~~~~~i~~~~~vnigvAv~~~~GL~vPvi~ 314 (435)
T TIGR01349 237 IECNVDKLLALRKELNAMASE--VYKLSVNDFIIKASALALREVPEANSSWTDNFIRRYKNVDISVAVATPDGLITPIVR 314 (435)
T ss_pred EEEEhHHHHHHHHHHHhhhhc--CCcccHHHHHHHHHHHHHHhCcHhheEEeCCeEEEeCCeeEEEEEECCCCeEECCCC
Confidence 999999999999999865432 789999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCHHHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCccccccccceee---ehhhhcccce
Q 010531 427 DADKKGLSTIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLSILLNLAFL---QLDLLRKGLS 493 (508)
Q Consensus 427 dAd~ksL~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fGi~~~~Pil---~~~~~~~g~~ 493 (508)
|||+|||.+|++++++|+++||+|+|+++||+|||||||| +|+ ||+.+|+||+ +.++++.|.-
T Consensus 315 ~a~~~sl~eia~~i~~l~~~ar~~~L~~~d~~ggTfTISN---lG~-~G~~~~tpiin~pq~aIlgvG~i 380 (435)
T TIGR01349 315 NADAKGLSTISNEIKDLAKRARNNKLKPEEFQGGTFTISN---LGM-FGIKDFTAIINPPQACILAVGAV 380 (435)
T ss_pred CcccCCHHHHHHHHHHHHHHHhcCCCChhhcCCCeEEEec---CCc-cCccceECccCCCceEEEEcccc
Confidence 9999999999999999999999999999999999999999 999 9999999998 5666666654
No 7
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=100.00 E-value=1.6e-71 Score=606.40 Aligned_cols=365 Identities=27% Similarity=0.396 Sum_probs=283.5
Q ss_pred eEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEeccCC
Q 010531 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (508)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~~ 198 (508)
++|+||+||+ |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+ .|++|++|+++.++++
T Consensus 117 ~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ei~a~~~G~v~~i~v~~G~-~v~vG~~l~~i~~~~~ 194 (546)
T TIGR01348 117 QEVTVPDIGD-IEKVTVIEVLVKVGDTVSADQSLITLESDKASMEVPAPASGVVKSVKVKVGD-SVPTGDLILTLSVAGS 194 (546)
T ss_pred eEEeCCCCCC-cceeEEeEEeeCCCCcccCCCeeEEEEecceeeEecCCCCcEEEEEecCCCC-EecCCCEEEEEecCCC
Confidence 6999999999 9999999999999999999999999999999999999999999999999997 9999999999865443
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCcc-ccChhHHHHHHHcCCCCCcccc
Q 010531 199 DIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRL-FASPVARNLAEEHNVSLSSIKG 277 (508)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~aSP~aRrLA~e~gIDLs~V~G 277 (508)
+..... .+.. + ++....+.+..+.+...+.+.....+. ........+.++ ++||+||+||+||||||+.|+|
T Consensus 195 ~~~~~~--~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~asP~aR~lA~e~gvdl~~v~g 267 (546)
T TIGR01348 195 TPATAP--APAS-A---QPAAQSPAATQPEPAAAPAAAKAQAPA-PQQAGTQNPAKVDHAAPAVRRLAREFGVDLSAVKG 267 (546)
T ss_pred Cccccc--Cccc-c---cccCCCCccccccccCCCCCCCccCcc-cccccccccccccCCCHHHHHHHHHcCCCHhhCCC
Confidence 211000 0000 0 000000000000000000000000000 000001122356 7999999999999999999999
Q ss_pred cCCCCccchhhHHHHHHhcCC-CCCCCCCCC-C---CCCCC-----C-CcccccCCchhhHHHHHhhhhccCCcceEEEe
Q 010531 278 TGPNGLIVKADIEDYLASRGK-EVPAKAPKG-K---DVAAP-----A-LDYVDIPHSQIRKITASRLLFSKQTIPHYYLT 346 (508)
Q Consensus 278 TGp~GRItk~DV~~~~~~~~~-~~~a~~~a~-~---~~~~~-----~-~~~~~ipls~iRkaiA~~m~~S~~~iP~~~l~ 346 (508)
||++|||+++||++|+..... .++.++++. . ....+ . ..++.+||++|||+||++|.+|++++||||++
T Consensus 268 tG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~rk~ia~~m~~S~~~iPh~~~~ 347 (546)
T TIGR01348 268 TGIKGRILREDVQRFVKEPSVRAQAAAASAAGGAPGALPWPNVDFSKFGEVEEVDMSRIRKISGANLTRNWTMIPHVTHF 347 (546)
T ss_pred CCCCCeEeHHHHHHHhhccccccCcccccccCCccccCCCccccccccCcceeeecchHHHHHHHHHHHHhhcCCEEEEE
Confidence 999999999999999853211 111000000 0 00000 0 01346799999999999999999999999999
Q ss_pred eeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceeeC--CeeEEcCCccEEEEeecCCceEeee
Q 010531 347 VDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD--EYIRQFKNVNINVAVQTENGLYVPV 424 (508)
Q Consensus 347 ~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~~--~~I~~~~~vnIgVAVdt~~GLvvPV 424 (508)
.++|+++|+++|+++|+..+. +|.|+||++||+||++.||++||.+|++|++ +.|++++++||||||++++||+|||
T Consensus 348 ~evdvt~l~~~r~~l~~~~~~-~g~kls~~~~l~kA~~~AL~~~P~~Na~~~~~~~~i~~~~~vnigvAv~~~~GL~vPv 426 (546)
T TIGR01348 348 DKADITEMEAFRKQQNAAVEK-EGVKLTVLHILMKAVAAALKKFPKFNASLDLGGEQLILKKYVNIGVAVDTPNGLLVPV 426 (546)
T ss_pred EEEEcHHHHHHHHHHHhhhhh-cCCcccHHHHHHHHHHHHHHhCChhhEEEeCCCCEEEEeCCcCEEEEEECCCCeEECC
Confidence 999999999999999975544 4889999999999999999999999999984 4799999999999999999999999
Q ss_pred ecccccCCHHHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCccccccccceee---ehhhhcccc---eeeEEe
Q 010531 425 IRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLSILLNLAFL---QLDLLRKGL---SLAWVQ 498 (508)
Q Consensus 425 IrdAd~ksL~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fGi~~~~Pil---~~~~~~~g~---~~~w~~ 498 (508)
|||+++|||.+|++++++|+++||+|+|+++||+|||||||| +|| ||+.+|+||+ +.++++.|. .| |+.
T Consensus 427 i~~a~~~sl~~ia~~~~~l~~~ar~g~L~~~d~~ggTfTiSN---lG~-~G~~~~~piin~Pq~aIl~vg~~~~~p-~~~ 501 (546)
T TIGR01348 427 IKDVDRKGITELALELSDLAKKARDGKLTPDEMQGACFTISS---LGG-IGGTAFTPIVNAPEVAILGVSKSGMEP-VWN 501 (546)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHhcCCCCHHHhCCCeEEEeC---CCC-CCCcceECCCCCCceEEEEcccceEEe-EEE
Confidence 999999999999999999999999999999999999999999 999 9999999999 677777776 46 443
No 8
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=100.00 E-value=2.9e-71 Score=584.43 Aligned_cols=349 Identities=41% Similarity=0.591 Sum_probs=286.6
Q ss_pred ceEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEeccC
Q 010531 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (508)
Q Consensus 118 ~~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~ 197 (508)
.++|+||+||++|+||+|++|+||+||.|++||+|+||||||+++||+||++|+|.+|++++|+ +|+||++|+++.+++
T Consensus 2 ~~ei~mP~lge~~~EG~I~~W~~k~GD~V~~gd~L~eVeTDKa~~EV~ap~~G~l~~i~~~~G~-~V~Vg~~I~~i~~~~ 80 (404)
T COG0508 2 AIEIKMPDLGETMTEGTIVEWLKKVGDKVKEGDVLVEVETDKATMEVPAPDAGVLAKILVEEGD-TVPVGAVIARIEEEG 80 (404)
T ss_pred CceEecCCCCCccceEEEEEEecCCCCeecCCCeeEEEEcCceeEEecCCCCeEEEEEeccCCC-EEcCCCeEEEEecCC
Confidence 4799999999999999999999999999999999999999999999999999999999999998 899999999997665
Q ss_pred CccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHHHcCCCCCcccc
Q 010531 198 EDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKG 277 (508)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~aRrLA~e~gIDLs~V~G 277 (508)
++. +..+.. + +.+..+.+ ..++.+. ......+..+||++|+||+|+||||+++.|
T Consensus 81 ~~~-------~a~~~~---~----~~~~~~~~------~~~~~~~-----~~~~~~~~~asP~~r~la~e~gidl~~v~g 135 (404)
T COG0508 81 ADA-------PAAAEA---P----PEPAAAAP------ASAPATA-----ASAAAGRVLASPAVRRLAREAGIDLSKVKG 135 (404)
T ss_pred Ccc-------cccCcc---c----CCccccCc------CcccCcc-----ccccccccccCcchhhhhhhcCCCHHHcCC
Confidence 432 000000 0 00000000 0000000 000114788999999999999999999999
Q ss_pred cCCCCccchhhHHHHHHhcCCCCCCCCCCCCCCCCCCCcccccCCchhhHHHHHhhhhccCCcceEEEeeeecHHHHHHH
Q 010531 278 TGPNGLIVKADIEDYLASRGKEVPAKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGL 357 (508)
Q Consensus 278 TGp~GRItk~DV~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~ipls~iRkaiA~~m~~S~~~iP~~~l~~~vdvt~L~~l 357 (508)
||++|||+++|++.++...........+...........++.+|++++||.|+++|..|++++||+|.+.++|+++|+++
T Consensus 136 tG~~gri~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rk~ia~~m~~s~~~~p~~t~~~evd~t~l~~l 215 (404)
T COG0508 136 TGPGGRITKKDVEAAVAEKAAAAAAPAPAAAAPASAAGEEERVPMSRIRKAIAERMVESKQTIPHLTLFNEVDMTKLMAL 215 (404)
T ss_pred cCCCCceeccchhhhcccccccccccccccCCcccccCCceeeecccHHHHHHHHHHHHHhhCCeEEEEeeecHHHHHHH
Confidence 99999999999999987541111111110000111223567899999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceeeCC--eeEEcCCccEEEEeecCCceEeeeecccccCCHHH
Q 010531 358 RNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADE--YIRQFKNVNINVAVQTENGLYVPVIRDADKKGLST 435 (508)
Q Consensus 358 R~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~~~--~I~~~~~vnIgVAVdt~~GLvvPVIrdAd~ksL~e 435 (508)
|++++..++.. |.|+|+++|++||++.||++||.+|++|+++ .+.+++++|||+||++++||+|||||||+++++.+
T Consensus 216 r~~~~~~~~~~-g~klt~~~f~~kA~~~Alk~~P~~Na~~~~~~~~iv~~~~~~igiAv~t~~GLvvpVir~a~~~~~~~ 294 (404)
T COG0508 216 RKKLKEEFEKK-GVKLTFLSFLVKAVVKALKKFPEVNASIDGDGEEIVYHKYVNIGIAVDTPRGLVVPVIRDADKKSLAE 294 (404)
T ss_pred HHHhhhhhccc-CccccHHHHHHHHHHHHHHhCCccceeeccccceEEEeccccEEEEEecCCCeEecceeecccCCHHH
Confidence 99999866644 9999999999999999999999999888865 79999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCccccccccceee---ehhhhccc---ceeeEE
Q 010531 436 IAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLSILLNLAFL---QLDLLRKG---LSLAWV 497 (508)
Q Consensus 436 Ia~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fGi~~~~Pil---~~~~~~~g---~~~~w~ 497 (508)
|+.++.+|+.+||+|+|+++||+|||||||| +|+ ||+..|+||+ +.++++.| .+|+|+
T Consensus 295 i~~~i~~la~~aR~~kl~~~e~~ggtftisn---~G~-~g~~~~tpiin~Pq~aILgv~~~~~rpv~~ 358 (404)
T COG0508 295 IAKEIKDLAKKARDGKLTPEEMQGGTFTISN---LGM-FGSLMFTPIINPPQVAILGVGAIEERPVVV 358 (404)
T ss_pred HHHHHHHHHHHHHhcCcCHHHhCCceEEeec---CCc-cccceecccccChhHheeeccccccCceEe
Confidence 9999999999999999999999999999999 888 9999999998 55554444 447665
No 9
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=100.00 E-value=5.3e-70 Score=577.02 Aligned_cols=351 Identities=25% Similarity=0.375 Sum_probs=279.7
Q ss_pred EecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEeccCCcc
Q 010531 121 IGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDI 200 (508)
Q Consensus 121 i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~~~~ 200 (508)
|.||+||++|+||+|++|+|++||.|++||+|++|||||+.++++||.+|+|.++++++|+ .|++|++|+++..++++.
T Consensus 1 ~~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdK~~~ev~a~~~G~v~~i~v~~G~-~v~vG~~l~~i~~~~~~~ 79 (416)
T PLN02528 1 VPLAQTGEGIAECELLRWFVKEGDQVEEFQPLCEVQSDKATIEITSRYKGKVAQINFSPGD-IVKVGETLLKIMVEDSQH 79 (416)
T ss_pred CCCCCCCCCccEEEEEEEEeCCCCEECCCCEEEEEEeCceeEEEecCCCEEEEEEEeCCCC-EeCCCCEEEEEeccCCcc
Confidence 4799999999999999999999999999999999999999999999999999999999997 999999999885433221
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHHHcCCCCCcccccCC
Q 010531 201 PKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGTGP 280 (508)
Q Consensus 201 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~aRrLA~e~gIDLs~V~GTGp 280 (508)
.. +.+.+ ++.+.. +.+ .+... .+. . .....+++||+||+||+|+||||+.|+|||+
T Consensus 80 ~~-----~~~~~---~~~~~~--~~~-------~~~~~-~~~----~--~~~~~~~asP~aR~lA~e~gvdl~~v~gtG~ 135 (416)
T PLN02528 80 LR-----SDSLL---LPTDSS--NIV-------SLAES-DER----G--SNLSGVLSTPAVRHLAKQYGIDLNDILGTGK 135 (416)
T ss_pred cc-----ccCCC---CCCCCc--cCC-------CCCCC-Ccc----c--cccCCccCChHHHHHHHHhCCCHHHCCCCCC
Confidence 10 00000 000000 000 00000 000 0 0111357999999999999999999999999
Q ss_pred CCccchhhHHHHHHhcCC-CCCC-CCC-CCCCC-------CCC-CC--cccccCCchhhHHHHHhhhhccCCcceEEEee
Q 010531 281 NGLIVKADIEDYLASRGK-EVPA-KAP-KGKDV-------AAP-AL--DYVDIPHSQIRKITASRLLFSKQTIPHYYLTV 347 (508)
Q Consensus 281 ~GRItk~DV~~~~~~~~~-~~~a-~~~-a~~~~-------~~~-~~--~~~~ipls~iRkaiA~~m~~S~~~iP~~~l~~ 347 (508)
+|||+++||++|++.... ..+. .++ ..... ..+ .. ..+.+||++|||+||++|.+|+ ++||||+..
T Consensus 136 ~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~-~ip~~~~~~ 214 (416)
T PLN02528 136 DGRVLKEDVLKYAAQKGVVKDSSSAEEATIAEQEEFSTSVSTPTEQSYEDKTIPLRGFQRAMVKTMTAAA-KVPHFHYVE 214 (416)
T ss_pred CCcEeHHHHHHHhhcccccccccccccccCCccccccccCCCcccccCcceeeccchHHHHHHHHHHhcC-cCCeEEEEE
Confidence 999999999999853221 1100 000 00000 000 01 1245799999999999999996 999999999
Q ss_pred eecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceeeCC--eeEEcCCccEEEEeecCCceEeeee
Q 010531 348 DICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADE--YIRQFKNVNINVAVQTENGLYVPVI 425 (508)
Q Consensus 348 ~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~~~--~I~~~~~vnIgVAVdt~~GLvvPVI 425 (508)
++|+++|+++|+++++... .+|.|+||++||+||+++||++||.+|++|+++ .|++++++||||||++++||+||||
T Consensus 215 eid~~~l~~~r~~~~~~~~-~~g~kls~~~~likA~a~aL~~~P~~Na~~~~~~~~i~~~~~vnIgiAv~~~~GL~vPvi 293 (416)
T PLN02528 215 EINVDALVELKASFQENNT-DPTVKHTFLPFLIKSLSMALSKYPLLNSCFNEETSEIRLKGSHNIGVAMATEHGLVVPNI 293 (416)
T ss_pred EEEhHHHHHHHHHHhhhhh-hcCCcccHHHHHHHHHHHHHHhCchhhEEEecCCceEEEeCCCCeEEEEeCCCCeEeccc
Confidence 9999999999999986433 348999999999999999999999999999865 7999999999999999999999999
Q ss_pred cccccCCHHHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCccccccccceee---ehhhhcccce---eeEEee
Q 010531 426 RDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLSILLNLAFL---QLDLLRKGLS---LAWVQI 499 (508)
Q Consensus 426 rdAd~ksL~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fGi~~~~Pil---~~~~~~~g~~---~~w~~~ 499 (508)
|++++|+|.+|++++++|+++||+|+|+++||+|||||||| +|| ||+.+|+||+ +.++++.|.- | |+++
T Consensus 294 ~~a~~~sl~eI~~~~~~l~~~ar~gkL~~~dl~ggTftiSN---lG~-~G~~~~tpIin~pq~aIlgvG~i~~~p-v~~~ 368 (416)
T PLN02528 294 KNVQSLSLLEITKELSRLQHLAAENKLNPEDITGGTITLSN---IGA-IGGKFGSPVLNLPEVAIIALGRIQKVP-RFVD 368 (416)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEeC---Ccc-ccCCceECcccCCceEEEEcccceEEe-EEeC
Confidence 99999999999999999999999999999999999999999 999 9999999998 7777777765 5 5554
Q ss_pred cccc
Q 010531 500 STNF 503 (508)
Q Consensus 500 ~~~~ 503 (508)
+..+
T Consensus 369 ~g~i 372 (416)
T PLN02528 369 DGNV 372 (416)
T ss_pred CCcE
Confidence 4433
No 10
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=100.00 E-value=1.4e-66 Score=576.63 Aligned_cols=360 Identities=30% Similarity=0.426 Sum_probs=280.9
Q ss_pred CceEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 117 PHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 117 ~~~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
..++|+||+|| |+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.+|++++|+ .|++|++|+++.++
T Consensus 205 ~~~~~~~p~lg--~~eg~v~~w~v~~Gd~V~~g~~l~~vetdK~~~~i~ap~~G~l~~i~~~~G~-~v~~G~~l~~i~~~ 281 (633)
T PRK11854 205 GVKDVNVPDIG--GDEVEVTEVMVKVGDKVEAEQSLITVEGDKASMEVPAPFAGTVKEIKVNVGD-KVKTGSLIMRFEVE 281 (633)
T ss_pred CceEEecCCCc--ccceEEEEEEecCCCeecCCCceEEEEecceeeEeeCCCCeEEEEEecCCCC-EecCCCEEEEEecC
Confidence 34799999999 9999999999999999999999999999999999999999999999999997 99999999998644
Q ss_pred CCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCC-CCCCCCCCCCccccChhHHHHHHHcCCCCCcc
Q 010531 197 EEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKA-SKPSAASPEDRLFASPVARNLAEEHNVSLSSI 275 (508)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~aSP~aRrLA~e~gIDLs~V 275 (508)
+++.... +.+... ..+ .+.+. .... +...+.+.. ........+.++++||+||+||+|+||||+.|
T Consensus 282 ~~~~~~~----~~~~~~-~~~-----~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~~asP~aR~lA~e~gidl~~v 348 (633)
T PRK11854 282 GAAPAAA----PAKQEA-AAP-----APAAA-KAEA--PAAAPAAKAEGKSEFAENDAYVHATPLVRRLAREFGVNLAKV 348 (633)
T ss_pred CCCcccc----ccccCC-CCC-----Ccccc-ccCC--CCCCCcccccccccccccCCccCCCchhHHHHHHhCCChhhc
Confidence 3321100 000000 000 00000 0000 000000000 00000112336789999999999999999999
Q ss_pred cccCCCCccchhhHHHHHHhcCC-CC--CCCCCCC-C-C--C--CC-C--CC-cccccCCchhhHHHHHhhhhccCCcce
Q 010531 276 KGTGPNGLIVKADIEDYLASRGK-EV--PAKAPKG-K-D--V--AA-P--AL-DYVDIPHSQIRKITASRLLFSKQTIPH 342 (508)
Q Consensus 276 ~GTGp~GRItk~DV~~~~~~~~~-~~--~a~~~a~-~-~--~--~~-~--~~-~~~~ipls~iRkaiA~~m~~S~~~iP~ 342 (508)
+||||+|||+++||++|+..... .. +.++++. . + . +. + .. ..+.+||++|||+||++|..|++++||
T Consensus 349 ~gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~ia~~m~~S~~~ip~ 428 (633)
T PRK11854 349 KGTGRKGRILKEDVQAYVKDAVKRAEAAPAAAAAGGGGPGLLPWPKVDFSKFGEIEEVELGRIQKISGANLHRNWVMIPH 428 (633)
T ss_pred CCCCCCCeEeHHHHHHHhhccccccccCCcccccccccccccccccccccccCcceEEeCchHHHHHHHHHHHHHhcCCe
Confidence 99999999999999999864211 00 1100000 0 0 0 00 0 00 124579999999999999999999999
Q ss_pred EEEeeeecHHHHHHHHHHHhhHHHH-hcCCceeHHHHHHHHHHHHHhhCCCCCceee--CCeeEEcCCccEEEEeecCCc
Q 010531 343 YYLTVDICVDNLMGLRNQLNSIQEA-SAGKRISVNDLVIKAAALALRKVPRCNSSWA--DEYIRQFKNVNINVAVQTENG 419 (508)
Q Consensus 343 ~~l~~~vdvt~L~~lR~~l~~~~~~-~~g~klSi~~~liKAva~AL~~~P~lNas~~--~~~I~~~~~vnIgVAVdt~~G 419 (508)
||++.++|++.|+++|++++..... .+|.++|+++||+||+++||++||.+|++|+ ++.|++++++||||||++++|
T Consensus 429 ~~~~~evD~t~l~~~rk~~~~~~~~~~~g~k~t~~~~likAva~Al~~~P~~Na~~~~~~~~i~~~~~vnigiAV~~~~G 508 (633)
T PRK11854 429 VTQFDKADITELEAFRKQQNAEAEKRKLGVKITPLVFIMKAVAAALEQMPRFNSSLSEDGQRLTLKKYVNIGIAVDTPNG 508 (633)
T ss_pred EEEEeEEEcHHHHHHHHHHhhhhhhhcccCcccHHHHHHHHHHHHHHhCCHhhEEEecCCCEEEEecccCEEEEEECCCc
Confidence 9999999999999999999854322 3489999999999999999999999999996 457999999999999999999
Q ss_pred eEeeeecccccCCHHHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCccccccccceee---ehhhhcccce---
Q 010531 420 LYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLSILLNLAFL---QLDLLRKGLS--- 493 (508)
Q Consensus 420 LvvPVIrdAd~ksL~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fGi~~~~Pil---~~~~~~~g~~--- 493 (508)
|+||||||+++++|.+|++++++|++++|+|+|+++||+|||||||| +|+ ||+.+|+||+ +.++++.|.-
T Consensus 509 L~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggTftISn---lG~-~G~~~~tpii~ppq~aIlgvG~i~~~ 584 (633)
T PRK11854 509 LVVPVFKDVNKKGIIELSRELMDISKKARDGKLTAGDMQGGCFTISS---IGG-LGTTHFTPIVNAPEVAILGVSKSAME 584 (633)
T ss_pred eEEeeECCCccCCHHHHHHHHHHHHHHHHcCCCChHHcCCcEEEEeC---Ccc-cCCcceeccccCCceEEEEcccceEE
Confidence 99999999999999999999999999999999999999999999999 999 9999999998 6666666653
Q ss_pred eeE
Q 010531 494 LAW 496 (508)
Q Consensus 494 ~~w 496 (508)
|+|
T Consensus 585 p~~ 587 (633)
T PRK11854 585 PVW 587 (633)
T ss_pred EEE
Confidence 766
No 11
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=100.00 E-value=3.5e-65 Score=541.00 Aligned_cols=336 Identities=26% Similarity=0.376 Sum_probs=262.1
Q ss_pred ccccccccccc---cccccCCCCCCceEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEE
Q 010531 96 RGFACSKVHLK---RGFSSDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYL 172 (508)
Q Consensus 96 ~~~~~~~~~~~---r~f~~~~~~~~~~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v 172 (508)
++++.++..+. |.|.....-. ++|+||+||++|+||+|++|+|++||.|++||+||+|||||+++||+||++|+|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~m--~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v 145 (463)
T PLN02226 68 RSASLVSSTLQRWVRPFSSESGDT--VEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVI 145 (463)
T ss_pred CchhhhhhhhhhcccccccccCCc--eEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEE
Confidence 44444444333 4455433222 699999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCeeeecCCEEEEEeccCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCC
Q 010531 173 AKIVKGDGSKEIKVGEVIAITVEEEEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPE 252 (508)
Q Consensus 173 ~~i~~~eG~~~v~vG~~la~i~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (508)
.+|++++|| .|++|++|+++.+++++.. .+. ....++. . . .+.+.. +.+ . .. .
T Consensus 146 ~~ilv~eGd-~V~vG~~L~~I~~~~~~~~-----~~~--~~~~~~~-------~--~--~~~~~~-~~~-----~-~~-~ 198 (463)
T PLN02226 146 QEFLVKEGD-TVEPGTKVAIISKSEDAAS-----QVT--PSQKIPE-------T--T--DPKPSP-PAE-----D-KQ-K 198 (463)
T ss_pred EEEEeCCCC-EecCCCEEEEeccCCcccc-----ccC--ccCCCCC-------C--C--CCCCCC-ccc-----c-cc-c
Confidence 999999997 9999999999853322100 000 0000000 0 0 000000 000 0 01 1
Q ss_pred CccccChhHHHHHHHcCCCCCcccccCCCCccchhhHHHHHHhcCCCCCCCCCCCCCCCCCCCcccccCCchhhHHHHHh
Q 010531 253 DRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGKEVPAKAPKGKDVAAPALDYVDIPHSQIRKITASR 332 (508)
Q Consensus 253 ~~v~aSP~aRrLA~e~gIDLs~V~GTGp~GRItk~DV~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~ipls~iRkaiA~~ 332 (508)
.++.++|++|+.+ .++|+.+.. .. ...+ ..+.....+.+|+++|||+||++
T Consensus 199 ~~v~asp~~r~~~----------~~~~~~~~~--------------~~-~~~~----~~~~~~~~~~ipls~~Rk~IA~~ 249 (463)
T PLN02226 199 PKVESAPVAEKPK----------APSSPPPPK--------------QS-AKEP----QLPPKERERRVPMTRLRKRVATR 249 (463)
T ss_pred cCCCcchhhcccc----------CCCCCCCCc--------------cc-ccCc----ccccCCCceeeeChHHHHHHHHH
Confidence 2567899987643 234443310 00 0000 00001113458999999999999
Q ss_pred hhhccCCcceEEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceeeCCeeEEcCCccEEE
Q 010531 333 LLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINV 412 (508)
Q Consensus 333 m~~S~~~iP~~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~~~~I~~~~~vnIgV 412 (508)
|.+|+++|||||+..++|+++|+++|+++++..+..+|.|+||++||+||+++||++||.+|++|+++.|+++++|||||
T Consensus 250 M~~S~~tiPh~t~~~evDvt~L~~lR~~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~~~~~i~~~~~vnIGv 329 (463)
T PLN02226 250 LKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISI 329 (463)
T ss_pred HHHHHhcCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEEcCCEEEEeCcccEEE
Confidence 99999999999999999999999999999976555558999999999999999999999999999999999999999999
Q ss_pred EeecCCceEeeeecccccCCHHHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCccccccccceee---ehhhhc
Q 010531 413 AVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLSILLNLAFL---QLDLLR 489 (508)
Q Consensus 413 AVdt~~GLvvPVIrdAd~ksL~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fGi~~~~Pil---~~~~~~ 489 (508)
||++++||+||||||||+|+|.||++++++|+++||+|+|+++||+|||||||| +|+ ||+.+|+||+ +.++++
T Consensus 330 AV~t~~GLvVPVIr~ad~~sl~eIa~ei~~L~~kAR~gkL~~~dl~GGTfTISN---lG~-~Gv~~ftPIInpPqvAILg 405 (463)
T PLN02226 330 AVGTSKGLVVPVIRGADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSN---GGV-YGSLISTPIINPPQSAILG 405 (463)
T ss_pred EEECCCCEEeccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEEC---CCc-ccccceeccccCCcEEEEE
Confidence 999999999999999999999999999999999999999999999999999999 999 9999999999 777777
Q ss_pred ccce
Q 010531 490 KGLS 493 (508)
Q Consensus 490 ~g~~ 493 (508)
.|+-
T Consensus 406 vG~i 409 (463)
T PLN02226 406 MHSI 409 (463)
T ss_pred cccc
Confidence 7775
No 12
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=4.8e-64 Score=548.86 Aligned_cols=357 Identities=32% Similarity=0.436 Sum_probs=279.0
Q ss_pred ceEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEeccC
Q 010531 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (508)
Q Consensus 118 ~~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~ 197 (508)
..+|+||+||+ |+||+|++|+|++||.|++||.|++|||||+.++|+||++|+|.++++++|+ .|++|++|+++.+.+
T Consensus 119 ~~~~~~P~~g~-~~eg~i~~w~v~~Gd~V~~g~~l~~vetdK~~~ev~Ap~~G~v~~i~~~~G~-~v~~G~~l~~i~~~~ 196 (547)
T PRK11855 119 VVEVKVPDIGE-ITEVEVIEWLVKVGDTVEEDQSLITVETDKATMEIPSPVAGVVKEIKVKVGD-KVSVGSLLVVIEVAA 196 (547)
T ss_pred ceEEecCCCCC-cceeEEeEEEeCCCCeecCCCeeEEEEecceeEEecCCCCeEEEEEecCCCC-EecCCCEEEEEecCC
Confidence 37999999999 9999999999999999999999999999999999999999999999999997 999999999986543
Q ss_pred CccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCcc-ccChhHHHHHHHcCCCCCccc
Q 010531 198 EDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRL-FASPVARNLAEEHNVSLSSIK 276 (508)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~aSP~aRrLA~e~gIDLs~V~ 276 (508)
++.... ..+. .. .+.. ...+.+. ..+.....+...... .....+ +. ++||+||+||+|+||||+.|+
T Consensus 197 ~~~~~~--~~~~-~~---~~~~-~~~~~~~---~~~~~~~~~~~~~~~-~~~~~~-~~~~asP~aR~lA~e~gidl~~v~ 264 (547)
T PRK11855 197 AAPAAA--AAPA-AA---APAA-AAAAAPA---PAPAAAAAPAAAAPA-AAAAPG-KAPHASPAVRRLARELGVDLSQVK 264 (547)
T ss_pred Cccccc--cCCC-CC---CCcc-ccccCCC---CCCcccccCCccccc-cccccC-CcccCChHHHHHHHHhCCCHHHCc
Confidence 221000 0000 00 0000 0000000 000000000000000 001122 44 799999999999999999999
Q ss_pred ccCCCCccchhhHHHHHHhcCCC--CCCC-CCCC---CC--CCCCC------CcccccCCchhhHHHHHhhhhccCCcce
Q 010531 277 GTGPNGLIVKADIEDYLASRGKE--VPAK-APKG---KD--VAAPA------LDYVDIPHSQIRKITASRLLFSKQTIPH 342 (508)
Q Consensus 277 GTGp~GRItk~DV~~~~~~~~~~--~~a~-~~a~---~~--~~~~~------~~~~~ipls~iRkaiA~~m~~S~~~iP~ 342 (508)
|||++|||+++||++|++..... .+.. +.+. .. ...+. ...+.+||++|||+||++|..|++++||
T Consensus 265 gtG~~GrI~~~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~r~~ia~~m~~S~~~iP~ 344 (547)
T PRK11855 265 GTGKKGRITKEDVQAFVKGAMSAAAAAAAAAAAAGGGGLGLLPWPKVDFSKFGEIETKPLSRIKKISAANLHRSWVTIPH 344 (547)
T ss_pred CCCCCCcEeHHHHHHHhhccccccccccccccccccccccccCCccccccccCcceEEeCcHHHHHHHHHHHHHhhcCCe
Confidence 99999999999999998642111 0100 0000 00 00110 0134579999999999999999999999
Q ss_pred EEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceee--CCeeEEcCCccEEEEeecCCce
Q 010531 343 YYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWA--DEYIRQFKNVNINVAVQTENGL 420 (508)
Q Consensus 343 ~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~--~~~I~~~~~vnIgVAVdt~~GL 420 (508)
||++.++|+++|+++|+++++..+. .|.++||++||+||+++||++||.||++|+ ++.+++++++|||+||++++||
T Consensus 345 ~~~~~evd~t~l~~~r~~~~~~~~~-~g~k~s~~~~likAv~~al~~~P~ln~~~~~~~~~i~~~~~i~i~~Av~~~~gl 423 (547)
T PRK11855 345 VTQFDEADITDLEALRKQLKKEAEK-AGVKLTMLPFFIKAVVAALKEFPVFNASLDEDGDELTYKKYFNIGFAVDTPNGL 423 (547)
T ss_pred EEEEEEEEChHHHHHHHHhhhhhhh-cCCCCCHHHHHHHHHHHHHHhCcHhhEEEccCCCEEEEeCCccEEEEEECCCcc
Confidence 9999999999999999999865544 389999999999999999999999999998 4589999999999999999999
Q ss_pred EeeeecccccCCHHHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCccccccccceee---ehhhhcccce
Q 010531 421 YVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLSILLNLAFL---QLDLLRKGLS 493 (508)
Q Consensus 421 vvPVIrdAd~ksL~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fGi~~~~Pil---~~~~~~~g~~ 493 (508)
++|||+|+++++|.+|++++++|++++|+|+|.++|++|||||||| +|+ ||+.+++|++ +.++++.|.-
T Consensus 424 ~vpvi~~~~~~sl~~i~~~~~~l~~~ar~~~l~~~~~~ggtftiSn---lg~-~g~~~~tpii~~pq~ail~~G~~ 495 (547)
T PRK11855 424 VVPVIKDVDKKSLLEIAREIAELAKKARDGKLKPDDMQGGCFTISS---LGG-IGGTAFTPIINAPEVAILGVGKS 495 (547)
T ss_pred EeCCcCCCccCCHHHHHHHHHHHHHHHHcCCCChHhcCCceEEEeC---Ccc-ccccceecCcCCCceEEEEcccc
Confidence 9999999999999999999999999999999999999999999999 999 9999999998 5666666654
No 13
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=100.00 E-value=1.1e-63 Score=525.86 Aligned_cols=322 Identities=25% Similarity=0.364 Sum_probs=249.9
Q ss_pred CCCCceEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 114 GLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 114 ~~~~~~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
.+-.+++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+ .|++|++|+++
T Consensus 40 ~~~~i~~i~~P~lg~~~~eg~I~~w~v~~Gd~V~~Gd~L~~vEtdK~~~ei~Ap~~G~v~~i~v~~G~-~V~~G~~L~~I 118 (418)
T PTZ00144 40 SYFSIKVIKVPTMGDSISEGTVVEWKKKVGDYVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGD-TVEVGAPLSEI 118 (418)
T ss_pred ccccceEEecCCCCCCcceEEEEEEEeCCCCEeCCCCEEEEEEEcceEEEEecCCCeEEEEEEeCCCC-EecCCCEEEEE
Confidence 44556899999999999999999999999999999999999999999999999999999999999997 99999999998
Q ss_pred eccCCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHHHcCCCCC
Q 010531 194 VEEEEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLS 273 (508)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~aRrLA~e~gIDLs 273 (508)
.+.+++.. .+.. +. .+.+++ .+ .+.+...+.|.+. .....+..++|.+|+...
T Consensus 119 ~~~~~~~~-----~~~~------~~--~~~~~~-~~--~~~~~~~~~p~~~----~~a~~~~~a~p~vr~~~~------- 171 (418)
T PTZ00144 119 DTGGAPPA-----AAPA------AA--AAAKAE-KT--TPEKPKAAAPTPE----PPAASKPTPPAAAKPPEP------- 171 (418)
T ss_pred cCCCcccc-----cccc------cc--CCCCCc-cC--CCCCCCCCCCccc----cccccccCCchhhhcccc-------
Confidence 54332100 0000 00 000000 00 0000000000000 001113445666653100
Q ss_pred cccccCCCCccchhhHHHHHHhcCCCCCCCCCCCCCCCCCCCcccccCCchhhHHHHHhhhhccCCcceEEEeeeecHHH
Q 010531 274 SIKGTGPNGLIVKADIEDYLASRGKEVPAKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDN 353 (508)
Q Consensus 274 ~V~GTGp~GRItk~DV~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~ipls~iRkaiA~~m~~S~~~iP~~~l~~~vdvt~ 353 (508)
.... +..+. ..+......+.+|+++|||+||++|.+|+++|||||++.++|+++
T Consensus 172 -----------------------~~~~-~~~~~--~~~~~~~~~~~ipls~~Rk~IA~~M~~S~~~iPh~t~~~eid~t~ 225 (418)
T PTZ00144 172 -----------------------APAA-KPPPT--PVARADPRETRVPMSRMRQRIAERLKASQNTCAMLTTFNECDMSA 225 (418)
T ss_pred -----------------------CCCC-CCCCC--CccccCCCceeeeCcHHHHHHHHHHHHHHhhCCeEEEEEEEechH
Confidence 0000 00000 000001112357999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceeeCCeeEEcCCccEEEEeecCCceEeeeecccccCCH
Q 010531 354 LMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGL 433 (508)
Q Consensus 354 L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~~~~I~~~~~vnIgVAVdt~~GLvvPVIrdAd~ksL 433 (508)
|+++|+++++.....+|.|+||++||+||++.||++||.+|++|+++.|++++++||||||++++||+||||+|||+|+|
T Consensus 226 l~~~r~~~~~~~~~~~g~klS~~~~liKAva~AL~~~P~~Na~~~~~~i~~~~~vnIgvAV~~~~GL~vPVI~~ad~~sl 305 (418)
T PTZ00144 226 LMELRKEYKDDFQKKHGVKLGFMSAFVKASTIALKKMPIVNAYIDGDEIVYRNYVDISVAVATPTGLVVPVIRNCENKSF 305 (418)
T ss_pred HHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhheEEcCCEEEEecCCCEEEEEECCCCEEEccCCCcccCCH
Confidence 99999999875555458999999999999999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCccccccccceee---ehhhhcccce
Q 010531 434 STIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLSILLNLAFL---QLDLLRKGLS 493 (508)
Q Consensus 434 ~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fGi~~~~Pil---~~~~~~~g~~ 493 (508)
.+|++++++|+++||+|+|+++||+|||||||| +|+ ||+.+|+||+ +.++++.|.-
T Consensus 306 ~eIa~ei~~L~~~ar~g~L~~~e~~GgTfTISN---lG~-~G~~~~tpIInpPq~aILgvG~i 364 (418)
T PTZ00144 306 AEIEKELADLAEKARNNKLTLEDMTGGTFTISN---GGV-FGSLMGTPIINPPQSAILGMHAI 364 (418)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHhCCceEEEEC---CCC-CCcceeeeeecCCceEEEecccc
Confidence 999999999999999999999999999999999 999 9999999998 7777777765
No 14
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=100.00 E-value=1.8e-62 Score=519.96 Aligned_cols=351 Identities=40% Similarity=0.578 Sum_probs=276.7
Q ss_pred eEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEeccCC
Q 010531 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (508)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~~ 198 (508)
.++.||+||++|+||+|.+|+|++||.|+.||+|++|||||+.++|+||++|+|.++++++|+ .|++|++|+++.+.++
T Consensus 3 ~~~~~P~lg~~~~~g~i~~w~v~~Gd~V~~g~~l~~vet~K~~~~i~Ap~~G~i~~~~v~~G~-~v~~G~~l~~i~~~~~ 81 (411)
T PRK11856 3 FEFKMPDLGEGMTEGEIVEWLVKVGDTVKEGQPLAEVETDKATVEIPSPVAGTVAKLLVEEGD-VVPVGSVIAVIEEEGE 81 (411)
T ss_pred eeEecCCCCCCCceEEEEEEEeCCcCEeCCCCEEEEEEecceEEEEeCCCCeEEEEEecCCCC-EeCCCCEEEEEecCCC
Confidence 589999999999999999999999999999999999999999999999999999999999997 9999999999865443
Q ss_pred -ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHHHcCCCCCcccc
Q 010531 199 -DIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKG 277 (508)
Q Consensus 199 -~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~aRrLA~e~gIDLs~V~G 277 (508)
+.... +..... ++.. . +.+. ..+.....+..........+.++++||+||+||+|+||||++|+|
T Consensus 82 ~~~~~~----~~~~~~--~~~~-~--~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~asP~~r~la~~~gidl~~i~g 147 (411)
T PRK11856 82 AEAAAA----AEAAPE--APAP-E--PAPA-----AAAAAAAAPAAAAAPAAPAAAAAKASPAVRKLARELGVDLSTVKG 147 (411)
T ss_pred Cccccc----cCCCCC--CCCC-C--CCCC-----CCCCCCCCCCcccCcccccCCcccCChHHHHHHHHcCCCHHHCcC
Confidence 21110 000000 0000 0 0000 000000000000000011122457999999999999999999999
Q ss_pred cCCCCccchhhHHHHHHhcCCCCC-CCCCCCCCCCCCCCcccccCCchhhHHHHHhhhhccCCcceEEEeeeecHHHHHH
Q 010531 278 TGPNGLIVKADIEDYLASRGKEVP-AKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMG 356 (508)
Q Consensus 278 TGp~GRItk~DV~~~~~~~~~~~~-a~~~a~~~~~~~~~~~~~ipls~iRkaiA~~m~~S~~~iP~~~l~~~vdvt~L~~ 356 (508)
||++|||+++||++|++.....+. ...+....+......++.+|++++||.||++|..||+++||||++.++|+++|++
T Consensus 148 sG~~Gri~~~Dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~m~~s~~~~P~~~~~~~idvt~l~~ 227 (411)
T PRK11856 148 SGPGGRITKEDVEAAAAAAAPAAAAAAAAAAAPPAAAAEGEERVPLSGMRKAIAKRMVESKREIPHFTLTDEVDVTALLA 227 (411)
T ss_pred CCCCCeEEHHHHHHHHhcccccCCCCCCCCCCCCcccCCCceEeeCcHHHHHHHHHHHHHhhcCCeEEEEEEEEhHHHHH
Confidence 999999999999999864321110 0000000000111134568999999999999999999999999999999999999
Q ss_pred HHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceeeCCeeEEcCCccEEEEeecCCceEeeeecccccCCHHHH
Q 010531 357 LRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTI 436 (508)
Q Consensus 357 lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~~~~I~~~~~vnIgVAVdt~~GLvvPVIrdAd~ksL~eI 436 (508)
+|+++++. +.++|+++|++||+++||.+||++|++|+++.+++|+++|||+||++++||++|||+++++++|.+|
T Consensus 228 ~~k~~~~~-----~~~ls~~~~~ikav~~Al~~~P~~n~~~~~~~i~~~~~i~i~~av~~~~gl~~pvi~~~~~~sl~ei 302 (411)
T PRK11856 228 LRKQLKAI-----GVKLTVTDFLIKAVALALKKFPELNASWDDDAIVLKKYVNIGIAVATDGGLIVPVIRDADKKSLFEL 302 (411)
T ss_pred HHHHHHhh-----ccCccHHHHHHHHHHHHHHhCcHhheEEeCCEEEEcCCcCEEEEEECCCCeEeCcCCCcccCCHHHH
Confidence 99998642 4789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCccccccccceee---ehhhhcccce
Q 010531 437 AEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLSILLNLAFL---QLDLLRKGLS 493 (508)
Q Consensus 437 a~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fGi~~~~Pil---~~~~~~~g~~ 493 (508)
++++.++++++|+|+|.++|++|||||||| +|+ ||+..++|++ +.+++..|.-
T Consensus 303 ~~~~~~~~~~ar~~~l~~~~~~~gtftiSn---~G~-~g~~~~~Pii~~p~~ail~iG~~ 358 (411)
T PRK11856 303 AREIKDLAEKAREGKLKPEELQGGTFTISN---LGM-FGGDYFTPIINPPEVAILGVGAI 358 (411)
T ss_pred HHHHHHHHHHHHcCCCCHHHhCCCeEEEeC---CCc-cCCCceECccCCCceEEEEcccc
Confidence 999999999999999999999999999999 898 8998899998 4444444443
No 15
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=1.6e-63 Score=497.50 Aligned_cols=343 Identities=25% Similarity=0.370 Sum_probs=277.4
Q ss_pred CceEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 117 PHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 117 ~~~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
-.+.|.+-++||+|.|.++.+|+|||||+|++.|+||||++||++++|+|.++|+|++|+...++ ...||++|..+.-+
T Consensus 63 gvv~f~LsdiGEGI~Ev~vkeWfVKEGDtVeqFd~lCEVQSDKAsvtItsRydG~v~ki~h~~dd-ia~VGk~Lvd~eve 141 (474)
T KOG0558|consen 63 GVVQFKLSDIGEGIAEVTVKEWFVKEGDTVEQFDPLCEVQSDKASVTITSRYDGKVKKIYHSPDD-IAKVGKPLVDLEVE 141 (474)
T ss_pred ceEEEEhhhccccceeeeeeeehhhcCCcHHHhcchhhcccccceEEEEeeecceEEEEeeCchh-hhHhCcceeeeeec
Confidence 36799999999999999999999999999999999999999999999999999999999999997 99999999876332
Q ss_pred CCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHHHcCCCCCccc
Q 010531 197 EEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIK 276 (508)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~aRrLA~e~gIDLs~V~ 276 (508)
+ +.+. +. .. ...++.. . ++.+ ....+....+++|++||||+|+||||+.|+
T Consensus 142 ~-~~ds-----~e---------~s--~es~~vs--~------~~~~----~~~~~~~~tlaTPaVRrlA~e~~idla~v~ 192 (474)
T KOG0558|consen 142 D-SQDS-----PE---------DS--DESPAVS--L------GESK----QGEESLLKTLATPAVRRLAKENGIDLAEVT 192 (474)
T ss_pred c-CcCC-----cc---------cC--Ccccccc--C------CCCc----hhhhhccccccCHHHHHHHHHhCCceEeee
Confidence 2 1100 00 00 0000000 0 0000 001122356799999999999999999999
Q ss_pred ccCCCCccchhhHHHHHHhcCCC--CCCC-----CCCCCCCCC--CC-CcccccCCchhhHHHHHhhhhccCCcceEEEe
Q 010531 277 GTGPNGLIVKADIEDYLASRGKE--VPAK-----APKGKDVAA--PA-LDYVDIPHSQIRKITASRLLFSKQTIPHYYLT 346 (508)
Q Consensus 277 GTGp~GRItk~DV~~~~~~~~~~--~~a~-----~~a~~~~~~--~~-~~~~~ipls~iRkaiA~~m~~S~~~iP~~~l~ 346 (508)
|||.+|||+|+||++|+.+.... ++.+ .+.+.+... +. .....+|+.+.+|+|.+.|+++ ..||||.+.
T Consensus 193 gtGKdGRvLKeDvL~fl~q~pg~~~~~~~~~~a~~~~~~ps~~a~~~~~~Dkt~plrGf~rAMvKtMt~a-lkiPHF~y~ 271 (474)
T KOG0558|consen 193 GTGKDGRVLKEDVLRFLGQVPGFVTDPSPSEHAVIPGPSPSTKASSNLEADKTVPLRGFSRAMVKTMTEA-LKIPHFGYV 271 (474)
T ss_pred ccCCCCcchHHHHHHHhccCCCCccCCCCceeecCCCCCCcccccCcccccceeechhHHHHHHHHHHHH-hcCCccccc
Confidence 99999999999999999765221 1110 000000000 11 1234689999999999999998 899999999
Q ss_pred eeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceeeC--CeeEEcCCccEEEEeecCCceEeee
Q 010531 347 VDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD--EYIRQFKNVNINVAVQTENGLYVPV 424 (508)
Q Consensus 347 ~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~~--~~I~~~~~vnIgVAVdt~~GLvvPV 424 (508)
.+||+|.|+++|++++.... ..|+|+||++|++||+++||.+||.+|++++. +.|++....|||||+||+.||+||.
T Consensus 272 dEIn~~sLvklr~elk~~a~-e~~IKltfmPf~iKaaSlaL~kyP~vNss~d~~~e~ii~K~sHNIgvAmdT~~GLvVPN 350 (474)
T KOG0558|consen 272 DEINCDSLVKLRQELKENAK-ERGIKLTFMPFFIKAASLALLKYPIVNSSFDEESENIILKGSHNIGVAMDTEQGLVVPN 350 (474)
T ss_pred cccChHHHHHHHHHHhhhhh-hcCceeeehHHHHHHHHHHHhhCccccchhhhhhhhhhhhcccceeEEecCCCceeccC
Confidence 99999999999999986433 35999999999999999999999999999986 4789999999999999999999999
Q ss_pred ecccccCCHHHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCccccccc-cceeeehhhhcccce
Q 010531 425 IRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLSILL-NLAFLQLDLLRKGLS 493 (508)
Q Consensus 425 IrdAd~ksL~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fGi~~-~~Pil~~~~~~~g~~ 493 (508)
|||++.+++.||++|+.+|.+.++.|+|.++|+.|||||+||||++||+|+... +.| ++++++.|+-
T Consensus 351 iKN~q~~si~eIakeLnrLq~~g~~~qls~~D~t~GTftLSNIG~IGGtf~~P~i~~P--eVAIgAlGri 418 (474)
T KOG0558|consen 351 IKNVQSLSIFEIAKELNRLQELGANGQLSPEDLTGGTFTLSNIGAIGGTFASPVIMPP--EVAIGALGRI 418 (474)
T ss_pred ccccchhhHHHHHHHHHHHHHhhhcCCcChhhccCceEEeeecccccccccCcccccc--hhhhhhcccc
Confidence 999999999999999999999999999999999999999999999999998642 222 5666666654
No 16
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=100.00 E-value=4.1e-58 Score=460.77 Aligned_cols=319 Identities=26% Similarity=0.381 Sum_probs=242.1
Q ss_pred ceEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEeccC
Q 010531 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (508)
Q Consensus 118 ~~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~ 197 (508)
.+++.+|.++|+++||+|.+|++++||.|++||.||+|||||++++|.||.+|+|.++++++|| +|.+|+.|+.|-...
T Consensus 72 ~vtv~vP~faESiteG~l~~~lK~~Gd~v~~DE~va~IETDK~tv~V~sP~sGvi~e~lvk~gd-tV~~g~~la~i~~ga 150 (457)
T KOG0559|consen 72 VVTVEVPPFAESITEGDLAQWLKKVGDRVNEDEAVAEIETDKTTVEVPSPASGVITELLVKDGD-TVTPGQKLAKISPGA 150 (457)
T ss_pred eeEEecCCcccccccchHHHHhhCcccccccchhheeeeccceeeeccCCCcceeeEEecCCCC-cccCCceeEEecCCC
Confidence 5799999999999999999999999999999999999999999999999999999999999997 999999999985432
Q ss_pred CccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHHHcCCCCCcccc
Q 010531 198 EDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKG 277 (508)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~aRrLA~e~gIDLs~V~G 277 (508)
++.+. ....|+.. +|..+.....++.+...+.+ .+..|...+++...+..-..++ +.+.-+.+-.++
T Consensus 151 Apa~~-~~~apa~~----~pk~~~a~~a~p~~~s~~~p-~~~apv~e~p~~p~~~~P~~~~-a~k~~v~~~~~~------ 217 (457)
T KOG0559|consen 151 APAKG-GASAPAKA----EPKTAPAAAAPPKPSSKPPP-KEAAPVAESPPAPSSPEPVPAS-AKKPSVAQPKPP------ 217 (457)
T ss_pred CCccc-cccCCCcc----CCCCCCCCCCCCCccCCCCc-cccCCCCCCCCCCCCCCCCCcc-ccCccccCCCCC------
Confidence 22111 01111110 01000000000000000000 0000000000000000000011 000000000000
Q ss_pred cCCCCccchhhHHHHHHhcCCCCCCCCCCCCCCCCCCCcccccCCchhhHHHHHhhhhccCCcceEEEeeeecHHHHHHH
Q 010531 278 TGPNGLIVKADIEDYLASRGKEVPAKAPKGKDVAAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGL 357 (508)
Q Consensus 278 TGp~GRItk~DV~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~ipls~iRkaiA~~m~~S~~~iP~~~l~~~vdvt~L~~l 357 (508)
+ .....+..+..+++|++||+.||.||.+|.++...+|.+.++||++|+++
T Consensus 218 ----------------------------p-~~~~~~~R~E~RVkMnRmR~RIA~RLKdsQNt~A~LTTFNEvDMS~lm~m 268 (457)
T KOG0559|consen 218 ----------------------------P-SEGATPSRSERRVKMNRMRLRIAERLKDSQNTAAMLTTFNEVDMSNLMEM 268 (457)
T ss_pred ----------------------------c-ccccCCCcchhhhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhhHHHHHHH
Confidence 0 00111223467899999999999999999999999999999999999999
Q ss_pred HHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceeeCCeeEEcCCccEEEEeecCCceEeeeecccccCCHHHHH
Q 010531 358 RNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIA 437 (508)
Q Consensus 358 R~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~~~~I~~~~~vnIgVAVdt~~GLvvPVIrdAd~ksL~eIa 437 (508)
|+++++.+-+++|+|+.++.+|+|||+.||++.|.+|+.++++.|+|++++||+|||+|++||+||||||++.+++.||.
T Consensus 269 Rk~ykdaf~kKhGvKlGfMs~F~KA~~~Alq~qPvVNavIdg~~iVYRDyvDISvAVaTpkGLVvPViRnae~Mn~adIE 348 (457)
T KOG0559|consen 269 RKQYKDAFLKKHGVKLGFMSGFSKAAAYALQDQPVVNAVIDGDDIVYRDYVDISVAVATPKGLVVPVIRNAESMNFADIE 348 (457)
T ss_pred HHHHHHHHHHHhCceeeehhHHHHHHHHHhhhCcceeeeecCCeeEEeecceeEEEeecCCceeeeeecccccccHHHHH
Confidence 99999877778999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCccccccccceee
Q 010531 438 EEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLSILLNLAFL 483 (508)
Q Consensus 438 ~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fGi~~~~Pil 483 (508)
.+|..|..|||+|+|+.|||.|||||||| ||.||+++.+||+
T Consensus 349 ~~i~~L~~KAr~g~laiedM~gGTFTISN----GGVfGSL~gTPII 390 (457)
T KOG0559|consen 349 KTIAGLGKKARDGKLAIEDMAGGTFTISN----GGVFGSLYGTPII 390 (457)
T ss_pred HHHHHHHHhhccCceeeeeccCceEEEeC----CcEeeeeccCccc
Confidence 99999999999999999999999999999 8889999999998
No 17
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=100.00 E-value=2e-55 Score=455.46 Aligned_cols=237 Identities=25% Similarity=0.378 Sum_probs=204.4
Q ss_pred CccccChhHHHHHHHcCCCCCcccccCCCCccchhhHHHHHHhcCCCC-CC---CCCCCCCCCC---CCCcccccCCchh
Q 010531 253 DRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGKEV-PA---KAPKGKDVAA---PALDYVDIPHSQI 325 (508)
Q Consensus 253 ~~v~aSP~aRrLA~e~gIDLs~V~GTGp~GRItk~DV~~~~~~~~~~~-~a---~~~a~~~~~~---~~~~~~~ipls~i 325 (508)
.++++||+||+||+|+||||++|+||||+|||+++||++|+......+ ++ ..++....+. .....+.+|+++|
T Consensus 47 ~~~~asP~aR~lA~e~gidl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~ 126 (347)
T PRK14843 47 NVVRISPLAKRIALEHNIAWQEIQGTGHRGKIMKKDVLALLPENIENDSIKSPAQIEKVEEVPDNVTPYGEIERIPMTPM 126 (347)
T ss_pred ccccCCchhhHHHHHcCCCHhhCCCCCCCCcccHHHHHHHHhccccCccccCCCCCccccCCCcccccCCcceeeeCcHH
Confidence 467899999999999999999999999999999999999985422111 01 0000000000 0112345799999
Q ss_pred hHHHHHhhhhccCCcceEEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceeeC--CeeE
Q 010531 326 RKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD--EYIR 403 (508)
Q Consensus 326 RkaiA~~m~~S~~~iP~~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~~--~~I~ 403 (508)
||+||++|.+|++++||||+..++|+++|+++|+++++.+...+|.|+||++||+||++.||++||.+|++|++ +.|+
T Consensus 127 r~~ia~~m~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~~~kls~~~~likA~a~AL~~~P~~Na~~~~~~~~i~ 206 (347)
T PRK14843 127 RKVIAQRMVESYLTAPTFTLNYEVDMTEMLALRKKVLEPIMEATGKKTTVTDLLSLAVVKTLMKHPYINASLTEDGKTII 206 (347)
T ss_pred HHHHHHHHHHHHhhCCeEEEEEEEEchHHHHHHHHHHHHHHhhcCCcccHHHHHHHHHHHHHHhCcceeEEEecCCCeEE
Confidence 99999999999999999999999999999999999986554445889999999999999999999999999984 4699
Q ss_pred EcCCccEEEEeecCCceEeeeecccccCCHHHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCccccccccceee
Q 010531 404 QFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLSILLNLAFL 483 (508)
Q Consensus 404 ~~~~vnIgVAVdt~~GLvvPVIrdAd~ksL~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fGi~~~~Pil 483 (508)
+++++||||||++++||+|||||||++|+|.+|++++++|+++||+|+|+++||+|||||||| +|| ||+.+|+||+
T Consensus 207 ~~~~vnigvAV~~~~GL~vPVIr~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~d~~GgTfTISN---lG~-~G~~~~tpII 282 (347)
T PRK14843 207 THNYVNLAMAVGMDNGLMTPVVYNAEKMSLSELVVAFKDVIGRTLDGKLAPSELQNSTFTISN---LGM-FGVQSFGPII 282 (347)
T ss_pred EecccceEEEEecCCCeEeCcCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEeC---CCC-Ccccceeccc
Confidence 999999999999999999999999999999999999999999999999999999999999999 999 9999999998
Q ss_pred ---ehhhhcccce
Q 010531 484 ---QLDLLRKGLS 493 (508)
Q Consensus 484 ---~~~~~~~g~~ 493 (508)
+.++++.|+-
T Consensus 283 npPq~aIlgvG~i 295 (347)
T PRK14843 283 NQPNSAILGVSST 295 (347)
T ss_pred cCCceEEEecCCc
Confidence 7777777764
No 18
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed
Probab=100.00 E-value=1.1e-54 Score=443.05 Aligned_cols=235 Identities=25% Similarity=0.401 Sum_probs=202.7
Q ss_pred cccChhHHHHHHHcCCCCCcccccCCCCccchhhHHHHHHhcCC--CC--CCCCCC-CCC-----C-C-CCCCcccccCC
Q 010531 255 LFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRGK--EV--PAKAPK-GKD-----V-A-APALDYVDIPH 322 (508)
Q Consensus 255 v~aSP~aRrLA~e~gIDLs~V~GTGp~GRItk~DV~~~~~~~~~--~~--~a~~~a-~~~-----~-~-~~~~~~~~ipl 322 (508)
+++||+||+||+|+||||++|+|||++|||+++||++|+..... .+ +...+. ... + + .+....+.+|+
T Consensus 2 ~~asP~aR~lA~e~gvdl~~v~gtG~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (306)
T PRK11857 2 ILATPIARALAKKLGIDISLLKGSGRDGKILAEDVENFIKSLKSAPTPAEAASVSSAQQAAKTAAPAAAPPKLEGKREKV 81 (306)
T ss_pred cCCCchhHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHhhccccccCCccccccccccccccccCCcccccCCCceeccC
Confidence 56899999999999999999999999999999999999754211 11 000000 000 0 0 01112345799
Q ss_pred chhhHHHHHhhhhccCCcceEEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceeeC--C
Q 010531 323 SQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD--E 400 (508)
Q Consensus 323 s~iRkaiA~~m~~S~~~iP~~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~~--~ 400 (508)
++||++||++|++|++++||+|+..++|+++|+++|+++++.+.+.+|.|+||++||+||++.||++||.+|++|++ +
T Consensus 82 s~~R~~ia~~M~~S~~~ip~~~~~~evd~t~l~~~r~~~~~~~~~~~g~kls~~~~likA~a~AL~~~P~~Na~~~~~~~ 161 (306)
T PRK11857 82 APIRKAIARAMTNSWSNVAYVNLVNEIDMTKLWDLRKSVKDPVLKTEGVKLTFLPFIAKAILIALKEFPIFAAKYDEATS 161 (306)
T ss_pred cHHHHHHHHHHHHhhccCCeEEEEEEEEchHHHHHHHHHHHhhhhhcCCCCCHHHHHHHHHHHHHHhCcHhhEEEeCCCC
Confidence 99999999999999999999999999999999999999987655556899999999999999999999999999985 4
Q ss_pred eeEEcCCccEEEEeecCCceEeeeecccccCCHHHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCccccccccc
Q 010531 401 YIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLSILLNL 480 (508)
Q Consensus 401 ~I~~~~~vnIgVAVdt~~GLvvPVIrdAd~ksL~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fGi~~~~ 480 (508)
.|+++++|||||||++++||+||||+|||+|||.||++++++|+++||+|+|+++||+|||||||| +|+ ||+.+++
T Consensus 162 ~i~~~~~vnigvAv~~~~GL~vPVI~~a~~~sl~eIa~~i~~l~~~Ar~~kL~~~dl~ggTfTISN---lG~-~G~~~~t 237 (306)
T PRK11857 162 ELVYPDTLNLGIAVDTEAGLMVPVIKNAQKLSIVEIAKEISRLAKAARERKIKPDEMKGGSFTITN---YGS-VGSLYGV 237 (306)
T ss_pred EEEEcCCccEEEEEECCCCEEeCCcCCcCcCCHHHHHHHHHHHHHHHHcCCCChhhcCCccEEEeC---CCC-CCcccee
Confidence 799999999999999999999999999999999999999999999999999999999999999999 999 9999999
Q ss_pred eee---ehhhhcccce
Q 010531 481 AFL---QLDLLRKGLS 493 (508)
Q Consensus 481 Pil---~~~~~~~g~~ 493 (508)
||+ +.++++.|.-
T Consensus 238 piIn~pq~aILgvG~i 253 (306)
T PRK11857 238 PVINYPELAIAGVGAI 253 (306)
T ss_pred cccCCCccceeecccc
Confidence 998 7777777764
No 19
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2.3.1 from EC, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide []. It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3). The domain is also found in the dihydrolipoamide succinyltransferase component of the 2-oxoglutarate dehydrogenase complex 2.3.1.61 from EC. These proteins contain one to three copies of a lipoyl binding domain followed by the catalytic domain.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1EAF_A 1EAA_A 1DPD_A 1EAE_A 1DPC_A 1EAB_A 1DPB_A 1EAC_A 1EAD_A 2II5_H ....
Probab=100.00 E-value=6.5e-42 Score=337.18 Aligned_cols=180 Identities=38% Similarity=0.575 Sum_probs=151.8
Q ss_pred cccccCCchhhHHHHHhhhhccCCcceEEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCc
Q 010531 316 DYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNS 395 (508)
Q Consensus 316 ~~~~ipls~iRkaiA~~m~~S~~~iP~~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNa 395 (508)
+++++|++++||+||++|.+|++++||+|+..++|+++|+++|+++++..... +.++|+++|++||+++||++||.+|+
T Consensus 3 ~~~~~~ls~~r~~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~l~~~~~~~-~~kis~~~~likAva~AL~~~P~lNa 81 (231)
T PF00198_consen 3 EETRVPLSGMRKAIAKRMTESLQTIPHFTLSREVDVTALLALRKELKEAGEEP-GGKISITDFLIKAVALALKEHPELNA 81 (231)
T ss_dssp SCEEEES-HHHHHHHHHHHHHHHHS-EEEEEEEEETHHHHHHHHHHHHHHHHT-TST-THHHHHHHHHHHHHHHSGGGSE
T ss_pred CcEEEECcHHHHHHHHHHHHHHhcCCeEEEEEEEEHHHHHHHHHHhhhHHHhh-ccCCChhHeeeehHhhhhHHHHHhcc
Confidence 35688999999999999999999999999999999999999999998765543 56999999999999999999999999
Q ss_pred eeeCCe-eEEcCCccEEEEeecCCceEeeeecccccCCHHHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCccc
Q 010531 396 SWADEY-IRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPL 474 (508)
Q Consensus 396 s~~~~~-I~~~~~vnIgVAVdt~~GLvvPVIrdAd~ksL~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~f 474 (508)
+|+++. |++++++||||||++++||+||||+|+++++|.||++++++|+++||+|+|+++||+|||||||| +|+ |
T Consensus 82 ~~~~~~~i~~~~~vnIgvAV~~~~GL~vPVIr~a~~~sl~eIa~e~~~l~~~ar~g~l~~~d~~g~TftisN---lG~-~ 157 (231)
T PF00198_consen 82 SWDGDGEIVLYERVNIGVAVDTPDGLVVPVIRDADKKSLAEIAKELRDLAERAREGKLTPEDLQGGTFTISN---LGM-F 157 (231)
T ss_dssp EEETTSEEEEESS--EEEEEEETTEEEEEEETTGGGS-HHHHHHHHHHHHHHHHTT---GGGGSS-SEEEEE---GGG-T
T ss_pred ccccccceeeeeeEEEEEEEEcCCCEEEEEEeCCccccHHHHHHHHhhhhccchhhhhhhhhhhccceeeee---cCC-C
Confidence 999887 99999999999999999999999999999999999999999999999999999999999999999 999 9
Q ss_pred cccccceee---ehhhhcccce---eeEEeeccc
Q 010531 475 SILLNLAFL---QLDLLRKGLS---LAWVQISTN 502 (508)
Q Consensus 475 Gi~~~~Pil---~~~~~~~g~~---~~w~~~~~~ 502 (508)
|+..|+||+ +.++++.|.- | |+ ++..
T Consensus 158 g~~~~~pii~~pq~ail~vG~i~~~p-~~-~~~~ 189 (231)
T PF00198_consen 158 GVESFTPIINPPQVAILGVGAIRDRP-VV-EDGE 189 (231)
T ss_dssp T-SCEE----TTSSEEEEEEEEEEEE-EE-ETTC
T ss_pred CcceeEccCCcccceEEEecceEEEE-EE-Eecc
Confidence 999999998 6666666654 6 66 4443
No 20
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=100.00 E-value=3.6e-35 Score=325.27 Aligned_cols=172 Identities=19% Similarity=0.227 Sum_probs=161.3
Q ss_pred ccccCCchhhHHHHHhhhhccCCcceEEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCce
Q 010531 317 YVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 396 (508)
Q Consensus 317 ~~~ipls~iRkaiA~~m~~S~~~iP~~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas 396 (508)
....|+++++++||++|..| .++|++|...+|+++.|+++|..+|+.+.+.+|.|+|+|+||+||+++||++||.+|++
T Consensus 115 ~~~~~LrG~a~aiAkNM~aS-L~vPtaTsvr~Ip~k~L~dnR~~In~~l~r~~GgKVSFThlI~kAvv~AL~~~P~mNas 193 (1228)
T PRK12270 115 DEVTPLRGAAAAVAKNMDAS-LEVPTATSVRAVPAKLLIDNRIVINNHLKRTRGGKVSFTHLIGYALVQALKAFPNMNRH 193 (1228)
T ss_pred cceeecccHHHHHHHHHHhh-hccCceeeeecccHHHHHHHHHHHHHHhhhccCCcccHHHHHHHHHHHHHHhCchhhce
Confidence 35679999999999999999 56999999999999999999999999888778999999999999999999999999999
Q ss_pred ee--CC--eeEEcCCccEEEEeecC-----CceEeeeecccccCCHHHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCC
Q 010531 397 WA--DE--YIRQFKNVNINVAVQTE-----NGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSA 467 (508)
Q Consensus 397 ~~--~~--~I~~~~~vnIgVAVdt~-----~GLvvPVIrdAd~ksL~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~ 467 (508)
|+ ++ .|+++++||||||||++ +||+|||||+|++|++.+|..++++|+.|||+|||+++||+||||||||
T Consensus 194 y~~~DGKp~iv~~~~VNlGiAVdl~~~dGsRgLVVPvIK~Ad~l~f~ef~~ay~dLV~KAR~gKLt~eD~~GgTFTISN- 272 (1228)
T PRK12270 194 YAEVDGKPTLVTPAHVNLGLAIDLPKKDGSRQLVVPAIKGAETMDFAQFWAAYEDIVRRARDGKLTADDFQGTTISLTN- 272 (1228)
T ss_pred eeccCCCceeeccCCcceEEEEecCCCCCCcceeeccccccccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCceEEEec-
Confidence 98 44 49999999999999999 6899999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccccceee---ehhhhcccce
Q 010531 468 SSNSVPLSILLNLAFL---QLDLLRKGLS 493 (508)
Q Consensus 468 GslGg~fGi~~~~Pil---~~~~~~~g~~ 493 (508)
+|| ||+.+|+||| +.++++.|.-
T Consensus 273 --~G~-iGt~~ftPILnppQ~AILGVGAi 298 (1228)
T PRK12270 273 --PGG-IGTVHSVPRLMKGQGAIIGVGAM 298 (1228)
T ss_pred --CCc-ccccceeeeecCCceEEEecccc
Confidence 999 9999999999 6667777664
No 21
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=99.76 E-value=3.9e-18 Score=175.39 Aligned_cols=76 Identities=39% Similarity=0.646 Sum_probs=73.6
Q ss_pred ceEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 118 ~~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
..+|+||+||++|+||+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+ .|.+|++|+.+.
T Consensus 2 ~~~~~~p~~~~~~~~g~~~~~~~~~g~~v~~~~~~~~~e~~k~~~~~~a~~~g~~~~~~~~~g~-~v~~g~~l~~i~ 77 (371)
T PRK14875 2 ITPITMPKWGLSMTEGKVAGWLVQEGDEVEKGDELLDVETDKITNEVEAPAAGTLRRQVAQEGE-TLPVGALLAVVA 77 (371)
T ss_pred ceEEeCCCCCCCCceEEEEEEEcCCCCEeCCCCEEEEEEecceeEEEecCCCeEEEEEEcCCCC-EeCCCCEEEEEe
Confidence 3699999999999999999999999999999999999999999999999999999999999997 999999999984
No 22
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=99.74 E-value=4.9e-18 Score=139.06 Aligned_cols=74 Identities=42% Similarity=0.721 Sum_probs=71.6
Q ss_pred eEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
.+|.+|.+|..+.+++|.+|++++||.|++||+||+|||||+.++|+||.+|+|.++++++|+ .|.+|++|++|
T Consensus 1 ~~i~~P~~G~~~~~~~i~~~~v~~G~~V~~G~~l~~iet~K~~~~v~a~~~G~i~~i~v~~G~-~V~~G~~l~~I 74 (74)
T PF00364_consen 1 TEIKAPMLGEVMEEGTITKWLVEEGDKVKKGDPLAEIETMKMEMEVEAPVSGIIKEILVEEGD-TVEVGQVLAII 74 (74)
T ss_dssp EEEEESSSSEEEEEEEEEEESSSTTEEESTTSEEEEEESSSEEEEEEBSSSEEEEEESSTTTE-EEETTSEEEEE
T ss_pred CEEECCCCccEEEecceeEEEECCCCEEEcCceEEEEEcCccceEEECCCCEEEEEEEECCCC-EECCCCEEEEC
Confidence 379999999999999999999999999999999999999999999999999999999999997 99999999975
No 23
>PRK06748 hypothetical protein; Validated
Probab=99.65 E-value=6.2e-16 Score=129.28 Aligned_cols=62 Identities=24% Similarity=0.336 Sum_probs=59.9
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEe-cceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVET-DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVet-dKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
.|+|.+|++++||.|++||+|++||| ||++++|+||.+|+|.+|++++|+ .|++|++|+++.
T Consensus 12 ~G~I~~w~vk~GD~V~~gd~l~~IETMdK~~~ei~Ap~~G~v~~i~v~~Gd-~V~vG~~la~I~ 74 (83)
T PRK06748 12 YGKVEKLFVRESSYVYEWEKLALIETIDKQKVEIKVGISGYIESLEVVEGQ-AIADQKLLITVR 74 (83)
T ss_pred cEEEEEEEeCCCCEECCCCEEEEEEcCCCceEEEecCCCEEEEEEEeCCCC-EECCCCEEEEEE
Confidence 49999999999999999999999999 999999999999999999999997 999999999983
No 24
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=99.62 E-value=5.3e-15 Score=159.39 Aligned_cols=83 Identities=54% Similarity=0.870 Sum_probs=76.8
Q ss_pred eEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEeccCC
Q 010531 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (508)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~~ 198 (508)
++|+||+||++|+||+|.+|+|++||.|++||+|++|||||++++|+||.+|+|.+|++++|++.|++|++|+++.++++
T Consensus 3 ~ei~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~iETdKa~~ev~A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~~~ 82 (464)
T PRK11892 3 IEILMPALSPTMEEGTLAKWLKKEGDKVKSGDVIAEIETDKATMEVEAVDEGTLGKILVPEGTEGVKVNTPIAVLLEEGE 82 (464)
T ss_pred cceecCCCCCCcceeEEEEEEecCCCEecCCCeEEEEEecceeeeecCCCceEEEEEEecCCCcEeCCCCEEEEEccCCC
Confidence 48999999999999999999999999999999999999999999999999999999999999536999999999876555
Q ss_pred ccc
Q 010531 199 DIP 201 (508)
Q Consensus 199 ~~~ 201 (508)
+..
T Consensus 83 ~~~ 85 (464)
T PRK11892 83 SAS 85 (464)
T ss_pred ccc
Confidence 443
No 25
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=99.50 E-value=9.7e-14 Score=112.65 Aligned_cols=61 Identities=23% Similarity=0.404 Sum_probs=59.2
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
.|+|.+|++++||.|++||+|++||+||+.++|.||.+|+|.++++++|+ .|++|++|+++
T Consensus 10 ~G~i~~~~v~~Gd~V~~g~~l~~ve~~K~~~~I~a~~~G~V~~i~v~~G~-~V~~G~~l~~i 70 (71)
T PRK05889 10 VASVLEVVVNEGDQIGKGDTLVLLESMKMEIPVLAEVAGTVSKVSVSVGD-VIQAGDLIAVI 70 (71)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEeccceeEEeCCCCEEEEEEEeCCCC-EECCCCEEEEE
Confidence 49999999999999999999999999999999999999999999999997 99999999986
No 26
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=99.49 E-value=1.5e-13 Score=111.35 Aligned_cols=72 Identities=33% Similarity=0.625 Sum_probs=69.1
Q ss_pred EecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 121 IGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 121 i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
|.+|+++.++.+|++.+|++++||.|++||+|+++|++|+.++|.||.+|+|.++.++.|+ .+..|+.|+.+
T Consensus 2 ~~~~~~~~~~~~g~~~~~~v~~G~~v~~g~~l~~ie~~k~~~~i~ap~~G~v~~~~~~~g~-~v~~g~~l~~i 73 (73)
T cd06663 2 ILIPDLAQHLGDGTVVKWLKKVGDKVKKGDVLAEIEAMKATSDVEAPKSGTVKKVLVKEGT-KVEGDTPLVKI 73 (73)
T ss_pred cccCCCCCCccCEEEEEEEcCCcCEECCCCEEEEEEeCCeEEEEEcCCCEEEEEEEeCCCC-EECCCCEEEEC
Confidence 6789999999999999999999999999999999999999999999999999999999997 89999999864
No 27
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase. This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817).
Probab=99.46 E-value=3.8e-13 Score=149.24 Aligned_cols=77 Identities=36% Similarity=0.575 Sum_probs=73.9
Q ss_pred eEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
++|.||+||++|+||+|.+|+|++||.|++||+||+|||||++++|+||.+|+|.++++++|+ .|++|++|+++.+.
T Consensus 3 ~~i~~P~lg~~~~eg~i~~w~v~~Gd~V~~g~~l~~vEtdKa~~ev~a~~~G~v~~i~v~~Gd-~v~vG~~ia~i~~~ 79 (590)
T TIGR02927 3 FSVEMPALGESVTEGTITQWLKAEGDTVELDEPLLEVSTDKVDTEIPSPAAGVILEIKAEEDD-TVDIGGEIAIIGEA 79 (590)
T ss_pred eeEECCCCCCCccEEEEEEEEECCCCEEeCCCeEEEEEecceEEEecCCCCEEEEEEeecCCC-EEeeeeeEEEEeec
Confidence 579999999999999999999999999999999999999999999999999999999999997 99999999988653
No 28
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated
Probab=99.45 E-value=2.7e-13 Score=151.62 Aligned_cols=75 Identities=31% Similarity=0.438 Sum_probs=71.9
Q ss_pred eEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
.+|.||+|| |+||+|.+|+|++||.|++||+|++|||||++++|+||.+|+|.++++++|+ .|++|++|+++.++
T Consensus 3 ~~i~~P~lg--~~eg~i~~~~v~~Gd~V~~g~~l~~vEt~K~~~~v~a~~~G~v~~i~~~~g~-~V~~G~~l~~i~~~ 77 (633)
T PRK11854 3 IEIKVPDIG--ADEVEVTEILVKVGDKVEAEQSLITVEGDKASMEVPSPQAGVVKEIKVKVGD-KVETGALIMIFESA 77 (633)
T ss_pred ceEeeCCCC--CceEEEEEEEeCCCCEECCCCEEEEEEeCCeeEEEeCCCCEEEEEEEeCCCC-EEeCCCEEEEEecc
Confidence 489999999 9999999999999999999999999999999999999999999999999997 99999999998554
No 29
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.38 E-value=2.1e-12 Score=104.29 Aligned_cols=61 Identities=26% Similarity=0.384 Sum_probs=59.1
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
-|+|.+|++++||.|++||+|++||+||+.++|.||.+|+|.++++++|+ .|..|++|+.+
T Consensus 9 ~G~i~~~~v~~G~~V~~g~~l~~ve~~k~~~~v~s~~~G~v~~~~~~~G~-~V~~g~~l~~i 69 (70)
T PRK08225 9 AGNVWKIVVKVGDTVEEGQDVVILESMKMEIPIVAEEAGTVKKINVQEGD-FVNEGDVLLEI 69 (70)
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEEcCCCcceEeCCCCEEEEEEEecCCC-EECCCCEEEEE
Confidence 38999999999999999999999999999999999999999999999997 99999999986
No 30
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=99.36 E-value=1.8e-12 Score=118.99 Aligned_cols=62 Identities=24% Similarity=0.437 Sum_probs=59.9
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
.-|++.+.+|++||.|++||+||.||.||+.++|+||.+|+|.+|++++|+ .|..||+|+.|
T Consensus 77 m~Gtv~~~~V~vGd~V~~Gq~l~IiEAMKmeneI~A~~~G~V~~Ilv~~G~-~Ve~G~~L~~I 138 (140)
T COG0511 77 MVGTVYKPFVEVGDTVKAGQTLAIIEAMKMENEIEAPADGVVKEILVKNGD-PVEYGDPLAVI 138 (140)
T ss_pred cceEEEEEeeccCCEEcCCCEEEEEEeeeccceecCCCCcEEEEEEecCCC-ccCCCCEEEEe
Confidence 359999999999999999999999999999999999999999999999997 99999999987
No 31
>PF02817 E3_binding: e3 binding domain; InterPro: IPR004167 A small domain of the E2 subunit of 2-oxo-acid dehydrogenases that is responsible for the binding of the E3 subunit. Proteins containing this domain include the branched-chain alpha-keto acid dehydrogenase complex of bacteria, which catalyses the overall conversion of alpha-keto acids to acyl-CoA and carbon dioxide; and the E-3 binding protein of eukaryotic pyruvate dehydrogenase.; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1BBL_A 1W4H_A 1BAL_A 2WXC_A 2BTH_A 2BTG_A 2CYU_A 2EQ7_C 2EQ8_C 3RNM_E ....
Probab=99.35 E-value=4.6e-13 Score=96.55 Aligned_cols=38 Identities=53% Similarity=0.782 Sum_probs=34.4
Q ss_pred ccccChhHHHHHHHcCCCCCcccccCCCCccchhhHHH
Q 010531 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIED 291 (508)
Q Consensus 254 ~v~aSP~aRrLA~e~gIDLs~V~GTGp~GRItk~DV~~ 291 (508)
++++||+||+||+|+|||+++|+|||++|||+++||++
T Consensus 2 ~i~asP~ar~la~e~gidl~~v~gtG~~GrI~k~Dv~a 39 (39)
T PF02817_consen 2 RIKASPAARKLAAELGIDLSQVKGTGPGGRITKEDVLA 39 (39)
T ss_dssp SCCCSHHHHHHHHHTT--GGGSSSSSTTSBBCHHHHHH
T ss_pred CcccCHHHHHHHHHcCCCcccccccCCCCcEeHHHhhC
Confidence 67899999999999999999999999999999999974
No 32
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed
Probab=99.31 E-value=7.6e-12 Score=137.96 Aligned_cols=76 Identities=33% Similarity=0.521 Sum_probs=72.6
Q ss_pred eEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
++|.||++|+ |.||+|.+|+|++||.|++||+|++|||||+.++|.||.+|+|.++++++|+ .|.+|++|+++.+.
T Consensus 3 ~~i~~p~~g~-~~~g~i~~~~v~~Gd~V~~g~~l~~iEt~K~~~~I~A~~~G~I~~i~v~~Gd-~V~~G~~L~~i~~~ 78 (547)
T PRK11855 3 IEFKVPDIGE-VVEVEVIEWLVKEGDTVEEDQPLVTVETDKATMEIPSPAAGVVKEIKVKVGD-TVSVGGLLAVIEAA 78 (547)
T ss_pred ceeecCCcCC-CceEEEEEEEcCCCCEeCCCCEEEEEEecCeeEEEecCCCeEEEEEEeCCCC-EecCCceeeEeccc
Confidence 5799999999 9999999999999999999999999999999999999999999999999997 99999999988543
No 33
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.27 E-value=1.8e-11 Score=110.77 Aligned_cols=62 Identities=23% Similarity=0.279 Sum_probs=59.5
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
..|+|.+|++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+ .|..|++|+.+
T Consensus 68 ~~G~V~~i~V~~Gd~V~~Gq~L~~lEamKme~eI~Ap~~G~V~~i~v~~Gd-~V~~G~~L~~I 129 (130)
T PRK06549 68 MPGTILKVLVAVGDQVTENQPLLILEAMKMENEIVASSAGTVTAIHVTPGQ-VVNPGDGLITI 129 (130)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEeccCccEEEEcCCCeEEEEEEeCCCC-EeCCCCEEEEe
Confidence 358999999999999999999999999999999999999999999999997 99999999876
No 34
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model describes a subset of pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase specifically close by both phylogenetic and per cent identity (UPGMA) trees. Members of this set include two or three copies of the lipoyl-binding domain. E. coli AceF is a member of this model, while mitochondrial and some other bacterial forms belong to a separate model.
Probab=99.25 E-value=2.1e-11 Score=134.30 Aligned_cols=74 Identities=35% Similarity=0.532 Sum_probs=70.9
Q ss_pred EEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 120 ~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
+|+||+||.. .+|+|++|+|++||.|++||+|++|||||+.++|.|+.+|+|.++++++|+ .|++|++|+++..
T Consensus 2 ~i~~p~lg~~-~~g~i~~~~v~~Gd~V~~G~~l~~vet~K~~~~I~a~~~G~V~~i~~~~Gd-~V~~G~~La~i~~ 75 (546)
T TIGR01348 2 EIKVPDIGDN-EEGEVIEVLVKPGDKVEAGQSLITLESDKASMEVPSSAAGIIKEIKVKVGD-TLPVGGVIATLEV 75 (546)
T ss_pred ceecCCCCCC-CceEEEEEEeCCCCEEcCCCEEEEEEcccceeEEEcCCCEEEEEEEecCCC-EEeccceEEEEec
Confidence 6899999987 999999999999999999999999999999999999999999999999997 9999999998843
No 35
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=99.22 E-value=7e-11 Score=92.90 Aligned_cols=62 Identities=27% Similarity=0.498 Sum_probs=59.0
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
.+|+|.+|++++||.|++||+|++++++|...+|.||.+|+|.++++++|+ .|..|++|+.+
T Consensus 6 ~~G~v~~~~v~~G~~v~~g~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~-~V~~G~~l~~i 67 (67)
T cd06850 6 MPGTVVKVLVKEGDKVEAGQPLAVLEAMKMENEVTAPVAGVVKEILVKEGD-QVEAGQLLVVI 67 (67)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEcccEEEEEeCCCCEEEEEEEECCCC-EECCCCEEEEC
Confidence 469999999999999999999999999999999999999999999999997 99999999864
No 36
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.21 E-value=4.2e-11 Score=111.40 Aligned_cols=62 Identities=27% Similarity=0.417 Sum_probs=59.4
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
..|+|.+|++++||.|++||.|+++|+||+.++|.||.+|+|.++++++|+ .|..|++|+.+
T Consensus 91 ~~G~I~~~~V~~Gd~V~~Gq~l~~iEamKme~eI~Ap~~G~V~~i~v~~Gd-~V~~Gq~L~~I 152 (153)
T PRK05641 91 MPGKILRILVREGQQVKVGQGLLILEAMKMENEIPAPKDGVVKKILVKEGD-TVDTGQPLIEL 152 (153)
T ss_pred CCeEEEEEEeCCCCEEcCCCEEEEEeecccceEEecCCCeEEEEEEcCCCC-EECCCCEEEEe
Confidence 348999999999999999999999999999999999999999999999997 99999999976
No 37
>PRK07051 hypothetical protein; Validated
Probab=99.21 E-value=6.4e-11 Score=98.46 Aligned_cols=61 Identities=28% Similarity=0.416 Sum_probs=57.9
Q ss_pred EEEEE-------EEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 133 GNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 133 g~I~~-------W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
|++.+ |++++||.|++||+|+++|+||+.++|.||.+|+|.++++++|+ .|..|++|+++.
T Consensus 12 g~~~~~~~~~~~~~v~~Gd~V~~g~~l~~ve~~k~~~~i~a~~~G~v~~i~~~~G~-~V~~G~~l~~i~ 79 (80)
T PRK07051 12 GTFYRRPSPDAPPYVEVGDAVAAGDVVGLIEVMKQFTEVEAEAAGRVVEFLVEDGE-PVEAGQVLARIE 79 (80)
T ss_pred eEEEecCCCCCCCccCCCCEECCCCEEEEEEEcceEEEEeCCCCEEEEEEEcCCcC-EECCCCEEEEEe
Confidence 66777 99999999999999999999999999999999999999999997 899999999873
No 38
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=99.16 E-value=3.9e-10 Score=88.04 Aligned_cols=73 Identities=56% Similarity=0.865 Sum_probs=69.9
Q ss_pred EEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 120 ~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
++.+|+++....+|+|.+|+++.|+.|..|++|+.++++|+..++.+|.+|++.+....+|+ .+..|++|+++
T Consensus 2 ~~~~~~~~~~~~~g~i~~~~~~~g~~v~~~~~l~~~~~~~~~~~i~a~~~g~v~~~~~~~g~-~v~~g~~l~~~ 74 (74)
T cd06849 2 EIKMPDLGESMTEGTIVEWLVKEGDSVEEGDVLAEVETDKATVEVEAPAAGVLAKILVEEGD-TVPVGQVIAVI 74 (74)
T ss_pred EEECCCCCCCCcEEEEEEEEECCCCEEcCCCEEEEEEeCCeEEEEECCCCEEEEEEeeCCcC-EeCCCCEEEEC
Confidence 58899999999999999999999999999999999999999999999999999999999997 99999999863
No 39
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=99.16 E-value=9.1e-11 Score=116.55 Aligned_cols=61 Identities=31% Similarity=0.502 Sum_probs=58.5
Q ss_pred eEEEEE-------EEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 132 EGNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 132 eg~I~~-------W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
.|++++ |+|++||.|++||+|++||+||+.++|+||.+|+|.+|++++|+ .|.+|++|++|
T Consensus 205 aGtf~r~p~pge~w~VkvGDsVkkGQvLavIEAMKmeieV~AP~sGtV~eIlVkeGD-~V~vGqpL~~I 272 (274)
T PLN02983 205 AGTFYRSPAPGEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADQSGTIVEILAEDGK-PVSVDTPLFVI 272 (274)
T ss_pred CeEEEeccCCCCcceeCCCCEecCCCEEEEEEeeceeeEEecCCCeEEEEEecCCCC-EeCCCCEEEEe
Confidence 478888 99999999999999999999999999999999999999999997 99999999987
No 40
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=99.13 E-value=1.5e-10 Score=108.20 Aligned_cols=61 Identities=28% Similarity=0.473 Sum_probs=57.8
Q ss_pred eEEEEE-------EEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 132 EGNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 132 eg~I~~-------W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
-|++.. |++++||.|++||+||.||+||+..+|+|+.+|+|.+|++++|+ .|..|++|+.+
T Consensus 88 ~G~~~~~~~P~~~~~v~~Gd~V~~Gq~l~iiEamK~~~eI~A~~~G~v~~i~v~~g~-~V~~Gq~L~~i 155 (156)
T TIGR00531 88 VGTFYRAPSPDAKPFVEVGDKVKKGQIVCIVEAMKLMNEIEAEVAGKVVEILVENGQ-PVEYGQPLIVI 155 (156)
T ss_pred CEEEEecCCCCCCccccCCCEeCCCCEEEEEEecccceEEecCCCcEEEEEEeCCCC-EECCCCEEEEE
Confidence 377776 99999999999999999999999999999999999999999997 99999999976
No 41
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=99.09 E-value=2.9e-10 Score=106.11 Aligned_cols=60 Identities=27% Similarity=0.495 Sum_probs=56.9
Q ss_pred EEEEE-------EEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 133 GNIAR-------WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 133 g~I~~-------W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
|++.. |+|++||.|++||+||.||+||+..+|+||.+|+|.++++++|+ .|..|++|+.+
T Consensus 88 G~~~~~~sP~~~~~v~~Gd~V~~Gq~l~~iEamK~~~eI~a~~~G~i~~i~v~~g~-~V~~Gq~L~~i 154 (155)
T PRK06302 88 GTFYRAPSPDAPPFVEVGDTVKEGQTLCIIEAMKVMNEIEADKSGVVTEILVENGQ-PVEFGQPLFVI 154 (155)
T ss_pred EEEEecCCCCCCcccCCCCEeCCCCEEEEEEecccceEEecCCCeEEEEEEcCCCC-EeCCCCEEEEe
Confidence 66665 99999999999999999999999999999999999999999997 99999999876
No 42
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=99.04 E-value=5.7e-10 Score=123.58 Aligned_cols=62 Identities=24% Similarity=0.393 Sum_probs=59.9
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
.|+|++|+|++||.|++||+|++||+||++.+|+||.+|+|.++++++|+ .|.+|++|+.+.
T Consensus 533 ~G~V~~~~V~~Gd~V~~Gq~L~~iEamKme~eV~AP~~GvV~~i~v~~Gd-~V~~G~~L~~I~ 594 (596)
T PRK14042 533 PGSIIAIHVSAGDEVKAGQAVLVIEAMKMETEIKAPANGVVAEILCQKGD-KVTPGQVLIRVE 594 (596)
T ss_pred ceEEEEEEeCCCCEeCCCCEEEEEEecceeeEEecCCCeEEEEEEeCCcC-EECCCCEEEEEe
Confidence 49999999999999999999999999999999999999999999999997 999999999873
No 43
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=98.96 E-value=1.4e-09 Score=129.34 Aligned_cols=62 Identities=26% Similarity=0.420 Sum_probs=59.7
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
..|+|++|+|++||.|++||+|++|||||++++|+||.+|+|.++++++|+ .|.+|++|+++
T Consensus 1139 ~~G~v~~~~v~~Gd~V~~Gd~l~~iEsmK~~~~v~ap~~G~v~~i~~~~G~-~V~~G~~l~~i 1200 (1201)
T TIGR02712 1139 YAGNFWKVLVEVGDRVEAGQPLVILEAMKMEMPVSAPVAGKVTKILCQPGD-MVDAGDIVAVL 1200 (1201)
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEecCeeEEEEcCCCEEEEEEEeCCCC-EeCCCCEEEEe
Confidence 359999999999999999999999999999999999999999999999997 99999999986
No 44
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=98.90 E-value=2.2e-09 Score=119.05 Aligned_cols=59 Identities=31% Similarity=0.468 Sum_probs=56.5
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEE
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVI 190 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~l 190 (508)
..|+|++|+|++||.|++||+|++||+||++++|.||.+|+|.++++++|+ .|.+|++|
T Consensus 524 ~~G~v~~~~V~~Gd~V~~G~~l~~iEamKme~~i~ap~~G~V~~i~v~~Gd-~V~~G~~l 582 (582)
T TIGR01108 524 IAGSIVKVKVSEGQTVAEGEVLLILEAMKMETEIKAAAAGTVREILVKVGD-AVSVGQVL 582 (582)
T ss_pred ccEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCC-EeCCCCCC
Confidence 359999999999999999999999999999999999999999999999997 89999975
No 45
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=98.87 E-value=5.9e-09 Score=115.87 Aligned_cols=62 Identities=27% Similarity=0.452 Sum_probs=59.5
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
..|+|.+|+|++||.|++||+|++||+||+..+|.||.+|+|.++++++|+ .|.+|++|+++
T Consensus 531 ~~G~I~~~~V~~Gd~V~~Gd~l~~iEamKme~~I~Ap~~G~V~~i~v~~Gd-~V~~G~~L~~I 592 (593)
T PRK14040 531 LAGNIFKVIVTEGQTVAEGDVLLILEAMKMETEIRAAQAGTVRGIAVKEGD-AVAVGDTLLTL 592 (593)
T ss_pred ccEEEEEEEeCCCCEeCCCCEEEEEecCceeEEEEcCCCEEEEEEEeCCCC-EECCCCEEEEe
Confidence 358999999999999999999999999999999999999999999999997 99999999986
No 46
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=98.83 E-value=8e-09 Score=122.14 Aligned_cols=61 Identities=18% Similarity=0.348 Sum_probs=59.2
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
.|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+ .|.+|++|+++
T Consensus 1082 ~G~v~~~~v~~Gd~V~~Gd~L~~iEamKm~~~I~Ap~~G~V~~i~v~~G~-~V~~g~~l~~i 1142 (1143)
T TIGR01235 1082 PGVIIEVKVSSGQAVNKGDPLVVLEAMKMETAIQAPKDGTIKEVLVKAGE-QIDAKDLLLVL 1142 (1143)
T ss_pred CcEEEEEEeCCCCEeCCCCEEEEEEecceeEEEecCCCEEEEEEEeCCCC-EECCCCEEEEe
Confidence 49999999999999999999999999999999999999999999999997 89999999986
No 47
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=98.70 E-value=3.9e-08 Score=109.46 Aligned_cols=62 Identities=26% Similarity=0.441 Sum_probs=59.6
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
..|+|.+|++++||.|++||+|++||++|+.++|.||.+|+|.++++++|+ .|..|++|+.+
T Consensus 529 ~~G~v~~~~V~~Gd~V~~Gq~L~~ieamKme~~V~Ap~~G~V~~i~v~~G~-~V~~G~~L~~i 590 (592)
T PRK09282 529 MPGTVVKVKVKEGDKVKAGDTVLVLEAMKMENEIQAPVDGTVKEILVKEGD-RVNPGDVLMEI 590 (592)
T ss_pred CcEEEEEEEeCCCCEECCCCEEEEEeccccceEEEcCCCeEEEEEEeCCCC-EeCCCCEEEEe
Confidence 348999999999999999999999999999999999999999999999997 99999999987
No 48
>PRK12999 pyruvate carboxylase; Reviewed
Probab=98.57 E-value=1.3e-07 Score=112.24 Aligned_cols=61 Identities=23% Similarity=0.463 Sum_probs=59.2
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
.|+|++|+|++||.|++||+|+++|+||+..+|.||.+|+|.++++++|+ .|..|++|+.+
T Consensus 1084 ~G~v~~i~v~~Gd~V~~G~~L~~leamKme~~i~Ap~~G~V~~i~v~~g~-~V~~g~~l~~i 1144 (1146)
T PRK12999 1084 PGSVVTVLVKEGDEVKAGDPLAVIEAMKMETTITAPVDGTVKRVLVKAGD-QVEAGDLLVEL 1144 (1146)
T ss_pred eEEEEEEEcCCCCEECCCCEEEEEEccccceEEecCCCEEEEEEEeCCCC-EECCCCEEEEE
Confidence 39999999999999999999999999999999999999999999999997 89999999987
No 49
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=98.39 E-value=5.6e-07 Score=97.41 Aligned_cols=63 Identities=27% Similarity=0.442 Sum_probs=60.1
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
..|+|+...|++|+.|.+||+|+.+|.||++..|.||.+|+|+++.+.+|+ .|.+|++|..+.
T Consensus 582 MpG~v~~v~V~~G~~V~~G~~lvvlEAMKME~~l~A~~dG~V~~v~v~~Gd-~V~~g~vLve~~ 644 (645)
T COG4770 582 MPGTVVSVAVKEGQEVSAGDLLVVLEAMKMENTLRAPRDGVVAKLAVAEGD-QVAVGTVLVEFE 644 (645)
T ss_pred CCceEEEEEecCCCEecCCCeEEEeEehhcccceecCcCcEEEEEEecCCC-ccccCceEEEec
Confidence 459999999999999999999999999999999999999999999999997 899999998873
No 50
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=98.27 E-value=1.2e-06 Score=97.62 Aligned_cols=66 Identities=26% Similarity=0.475 Sum_probs=60.7
Q ss_pred CCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 126 LSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 126 lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
+|..|. |+|++.+|++||+|++||+|+.+|.||++..|.||.+|+|.++++.+|+ .|..|+.|..+
T Consensus 1082 igApmp-G~Vv~v~V~~G~~Vk~Gd~l~~ieAMKMEt~i~Ap~dG~i~~v~V~~gd-~i~~gDLLi~~ 1147 (1149)
T COG1038 1082 IGAPMP-GVVVEVKVKKGDKVKKGDVLAVIEAMKMETTISAPFDGTVKEVLVKDGD-QIDGGDLLVVV 1147 (1149)
T ss_pred cCCCCC-CceEEEEEccCCeecCCCeeeehhhhhhceeeecCCCceEeEEEecCCC-ccccCceEEEc
Confidence 344443 8999999999999999999999999999999999999999999999997 89999999765
No 51
>cd06848 GCS_H Glycine cleavage H-protein. Glycine cleavage H-proteins are part of the glycine cleavage system (GCS) found in bacteria, archea and the mitochondria of eukaryotes. GCS is a multienzyme complex consisting of 4 different components (P-, H-, T- and L-proteins) which catalyzes the oxidative cleavage of glycine. The H-protein shuttles the methylamine group of glycine from the P-protein (glycine dehydrogenase) to the T-protein (aminomethyltransferase) via a lipoyl group, attached to a completely conserved lysine residue.
Probab=98.26 E-value=1.7e-06 Score=74.41 Aligned_cols=62 Identities=19% Similarity=0.283 Sum_probs=50.1
Q ss_pred eEEecCCCCCCCCeEEEEE-EEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCC
Q 010531 119 QEIGMPSLSPTMQEGNIAR-WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGS 181 (508)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~-W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~ 181 (508)
..+.|=+.+..+- |+|.. |++++||.|++||+|++||++|++.+|.||.+|+|.++..+.++
T Consensus 16 ~~lGlt~~~~~~l-G~i~~i~~~~~G~~v~~g~~l~~iEs~k~~~~i~sP~~G~v~~~n~~l~~ 78 (96)
T cd06848 16 ATVGITDYAQDLL-GDIVFVELPEVGTEVKKGDPFGSVESVKAASDLYSPVSGEVVEVNEALLD 78 (96)
T ss_pred EEEeeCHHHHhhC-CCEEEEEecCCCCEEeCCCEEEEEEEccEEEEEeCCCCEEEEEEhhhhhc
Confidence 3455555544443 56666 88888999999999999999999999999999999998876664
No 52
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=97.89 E-value=2.4e-05 Score=86.08 Aligned_cols=61 Identities=23% Similarity=0.342 Sum_probs=58.5
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
.|+|+++.|++|++|++||+||.+..+|+++-|.||.+|+|+++.+..|+ .+.-|+.|.++
T Consensus 1114 pG~vieikvk~G~kV~Kgqpl~VLSAMKMEmVv~sP~~G~vk~v~v~~g~-~~~g~DL~~~~ 1174 (1176)
T KOG0369|consen 1114 PGTVIEIKVKEGAKVKKGQPLAVLSAMKMEMVISSPHAGTVKKVHVVQGT-KVEGGDLIVEL 1174 (1176)
T ss_pred CCceEEEEEecCceecCCCceEeeecceeeeeecCCCCceeeEEEecCCC-cccccceEEEc
Confidence 49999999999999999999999999999999999999999999999997 89999999876
No 53
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial. The H protein (GcvH) of the glycine cleavage system shuttles the methylamine group of glycine from the P protein to the T protein. Most Chlamydia but lack the P and T proteins, and have a single homolog of GcvH that appears deeply split from canonical GcvH in molecular phylogenetic trees. The protein family modeled here is observed the Chlamydial GcvH homolog, so far always seen as part of a two-gene operon, downstream of a member of the uncharacterized protein family TIGR03076. The function of this protein is unknown.
Probab=97.87 E-value=2.1e-05 Score=69.62 Aligned_cols=46 Identities=20% Similarity=0.183 Sum_probs=38.8
Q ss_pred EEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCC
Q 010531 134 NIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDG 180 (508)
Q Consensus 134 ~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG 180 (508)
.-++|. ++|+.|++||++++||++|+..+|.||.+|+|.++..+..
T Consensus 33 ~~v~lp-~~G~~V~~g~~i~~IEs~K~~~ei~sP~sG~Vv~vN~~l~ 78 (110)
T TIGR03077 33 LHIDLP-SVGSSCKEGEVLVILESSKSAIEVLSPVSGEVIEVNIALE 78 (110)
T ss_pred EEEECC-CCCCEEcCCCEEEEEEeccEEEEEeCCCCEEEEEEHHHhh
Confidence 334443 7799999999999999999999999999999999864443
No 54
>PRK00624 glycine cleavage system protein H; Provisional
Probab=97.77 E-value=3.8e-05 Score=68.36 Aligned_cols=42 Identities=21% Similarity=0.224 Sum_probs=36.8
Q ss_pred EEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEE
Q 010531 134 NIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (508)
Q Consensus 134 ~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~ 176 (508)
.-++|. ++|+.|++||+|++||++|+..+|.||.+|+|.++.
T Consensus 35 ~~v~lp-~~G~~V~~g~~i~~IEs~K~~~~i~sPvsG~Vv~vN 76 (114)
T PRK00624 35 LHIDLP-SVGSFCKEGEVLVILESSKSAIEVLSPVSGEVIEVN 76 (114)
T ss_pred EEEECC-CCCCEEeCCCEEEEEEeccEEEEEeCCCCEEEEEEH
Confidence 334444 679999999999999999999999999999999884
No 55
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=97.67 E-value=0.00015 Score=78.08 Aligned_cols=61 Identities=25% Similarity=0.334 Sum_probs=57.7
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
.|.|.+.+||+||.|.+||.|+.++.+|+..-+.||.+|+|..+.++.|+ .|.-|.+|..+
T Consensus 609 pG~Iekv~Vkpgd~V~~Gq~l~Vl~AMKMe~~~~apk~gtvk~v~~~aG~-~v~~g~vlv~~ 669 (670)
T KOG0238|consen 609 PGIIEKVLVKPGDKVKEGQELVVLIAMKMEHSLKAPKDGTVKDVKYKAGA-TVGDGAVLVEF 669 (670)
T ss_pred CCeeeeeeccchhhhcccCceEEEEecchhhhhhCCCCCceeeEeeecCc-ccCCCceEEEe
Confidence 36999999999999999999999999999999999999999999999997 89999998765
No 56
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=97.63 E-value=7.8e-05 Score=87.69 Aligned_cols=66 Identities=24% Similarity=0.490 Sum_probs=60.6
Q ss_pred CCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 129 TMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 129 ~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
+-+.|++++|+|+.|+.|..||+-+|||.||+.|.+.|+.+|+|. ...++|+ .+.+|++||.+.-+
T Consensus 690 sPs~GKLl~ylVedG~hv~~Gq~YAeiEvMKMvm~lva~~~G~i~-~i~~~G~-~i~aG~vlakL~lD 755 (2196)
T KOG0368|consen 690 SPSPGKLLQYLVEDGEHVEAGQPYAEIEVMKMVMPLVAKEPGRIQ-LIKQEGD-AIEAGSVLAKLTLD 755 (2196)
T ss_pred CCCCccceEEEecCCCceecCCeeeehehhheeeeeeccCCceEE-EecCCCC-ccCccceeEEeecC
Confidence 456799999999999999999999999999999999999999996 6679997 99999999988543
No 57
>PRK14843 dihydrolipoamide acetyltransferase; Provisional
Probab=97.62 E-value=3e-05 Score=81.39 Aligned_cols=42 Identities=40% Similarity=0.731 Sum_probs=39.3
Q ss_pred CccccChhHHHHHHHcCCCCCcccccCCCCccchhhHHHHHH
Q 010531 253 DRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294 (508)
Q Consensus 253 ~~v~aSP~aRrLA~e~gIDLs~V~GTGp~GRItk~DV~~~~~ 294 (508)
+++++||.+|++|+++|||++.|+|||++|||+++||++|..
T Consensus 4 ~~~~asPaar~la~e~~idl~~i~gtG~~gri~k~Dv~~~~~ 45 (347)
T PRK14843 4 DKLRATPAARKLADDLGINLYDVSGSGANGRVHKEDVETYKD 45 (347)
T ss_pred ccccCChHHHHHHHHcCCCHHHCCCCCCCCceeHHHHhhhcc
Confidence 466789999999999999999999999999999999999865
No 58
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=97.62 E-value=0.00015 Score=74.74 Aligned_cols=35 Identities=20% Similarity=0.305 Sum_probs=31.6
Q ss_pred eEEecCCCeEEEEEEecCCCeeeecCCEEEEEeccC
Q 010531 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (508)
Q Consensus 162 ~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~ 197 (508)
..|.||++|+|..+.+++|+ .|..|++|+.+.+.+
T Consensus 205 ~~I~AP~~G~V~~~~~~~G~-~v~~g~~l~~i~~~~ 239 (334)
T TIGR00998 205 TVIRAPFDGYVARRFVQVGQ-VVSPGQPLMAVVPAE 239 (334)
T ss_pred cEEEcCCCcEEEEEecCCCC-EeCCCCeeEEEEcCC
Confidence 46999999999999999997 999999999987643
No 59
>PRK13380 glycine cleavage system protein H; Provisional
Probab=97.60 E-value=0.00011 Score=67.92 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=47.6
Q ss_pred eEEecCCCCCCCCeEEEEEEEcc-CCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecC
Q 010531 119 QEIGMPSLSPTMQEGNIARWLKK-EGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 179 (508)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~W~v~-~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~e 179 (508)
..|-|=+.+..+- |.|+.+.+. +|+.|++||+++.||++|+..+|.||.+|+|.++...-
T Consensus 31 ~~vGitd~aq~~l-G~I~~v~lp~~G~~V~~Gd~~~~IEs~K~~~~v~sPvsG~Vv~vN~~l 91 (144)
T PRK13380 31 VTVGITDYAQTMA-GDVVFVRLKELGKKVEKGKPVATLESGKWAGPVPAPLTGEVVEVNEAL 91 (144)
T ss_pred EEEecCHHHHHhc-CCEEEEEcCCCCCEeeCCCeEEEEEEcceEeeeecCcCEEEEEEHHhh
Confidence 3445554444333 677777765 89999999999999999999999999999999886443
No 60
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=97.59 E-value=0.00025 Score=76.05 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=57.3
Q ss_pred CeEEEEEEE-ccCCCeeCCCCeEEEEEec------------------------------------------------cee
Q 010531 131 QEGNIARWL-KKEGDKVSPGEVLCEVETD------------------------------------------------KAT 161 (508)
Q Consensus 131 ~eg~I~~W~-v~~Gd~V~~gd~L~eVetd------------------------------------------------Ka~ 161 (508)
..|.|.+.+ +++||.|++||+|+++++. ...
T Consensus 130 v~G~V~~l~~~~~Gd~VkkGq~La~l~spel~~aq~e~~~~~~~~~~~~~~~~~~~rl~~~~i~~~~i~~l~~~~~~~~~ 209 (409)
T PRK09783 130 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATRKIQTR 209 (409)
T ss_pred cCEEEEEEEecCCCCEECCCCEEEEEeCHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCc
Confidence 459999998 9999999999999999831 113
Q ss_pred eEEecCCCeEEEEEEecCCCeeeecCCEEEEEeccC
Q 010531 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (508)
Q Consensus 162 ~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~ 197 (508)
..|.||++|+|.+..+.+|+ .|..|++|+.|.+.+
T Consensus 210 ~~I~AP~dGvV~~~~v~~G~-~V~~g~~L~~I~d~~ 244 (409)
T PRK09783 210 FTLKAPIDGVITAFDLRAGM-NIAKDNVVAKIQGMD 244 (409)
T ss_pred EEEECCCCeEEEEEECCCCC-EECCCCeEEEEEcCC
Confidence 57999999999999999997 999999999987543
No 61
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=97.54 E-value=0.00013 Score=74.11 Aligned_cols=65 Identities=25% Similarity=0.420 Sum_probs=56.8
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecce--------------------------------------------------
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA-------------------------------------------------- 160 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa-------------------------------------------------- 160 (508)
.+|.|.++++++||.|++||+|+.+++.-.
T Consensus 33 ~~G~V~~i~v~~G~~V~kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~ 112 (322)
T TIGR01730 33 VAGKITKISVREGQKVKKGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVE 112 (322)
T ss_pred ccEEEEEEEcCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 459999999999999999999999976311
Q ss_pred ---------------------eeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 161 ---------------------TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 161 ---------------------~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
...|.||.+|+|..+.+++|+ .+..|++|+.+.+.
T Consensus 113 ~~~~~l~~~~~~l~~~~~~~~~~~i~AP~~G~V~~~~~~~G~-~v~~g~~l~~i~~~ 168 (322)
T TIGR01730 113 AAQADLEAAKASLASAQLNLRYTEIRAPFDGTIGRRLVEVGA-YVTAGQTLATIVDL 168 (322)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCEEECCCCcEEEEEEcCCCc-eeCCCCcEEEEEcC
Confidence 246999999999999999997 99999999988654
No 62
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=97.53 E-value=0.0002 Score=73.93 Aligned_cols=65 Identities=17% Similarity=0.283 Sum_probs=57.1
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecc---------------------------------------------------
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK--------------------------------------------------- 159 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdK--------------------------------------------------- 159 (508)
..|.|.++++++||.|++||+|++++...
T Consensus 54 v~G~V~~v~V~~Gd~VkkGqvLa~Ld~~~~~~~l~~a~a~l~~~~a~~~~~~~~~~r~~~L~~~aiS~~~~d~a~~~~~~ 133 (310)
T PRK10559 54 VSGLITQVNVHDNQLVKKGQVLFTIDQPRYQKALAEAEADVAYYQVLAQEKRREAGRRNRLGVQAMSREEIDQANNVLQT 133 (310)
T ss_pred CceEEEEEEeCCcCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 45999999999999999999999998731
Q ss_pred -------------------eeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 160 -------------------ATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 160 -------------------a~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
-...|.||++|+|.++.+++|+ .|..|++|+.+++.
T Consensus 134 a~a~l~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~~~~G~-~V~~g~~l~~Iv~~ 188 (310)
T PRK10559 134 VLHQLAKAQATRDLAKLDLERTVIRAPADGWVTNLNVYTGE-FITRGSTAVALVKQ 188 (310)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCEEECCCCeEEEeEecCCCC-EecCCCeeEEEEeC
Confidence 0246999999999999999997 99999999988764
No 63
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2.3.1.28 from EC) [] catalyzes the acetyl-CoA dependent acetylation of chloramphenicol (Cm), an antibiotic which inhibits prokaryotic peptidyltransferase activity. Acetylation of Cm by CAT inactivates the antibiotic. A histidine residue, located in the C-terminal section of the enzyme, plays a central role in its catalytic mechanism. There is a second family of CAT [], evolutionary unrelated to the main family described above. These CAT belong to the bacterial hexapeptide-repeat containing-transferases family (see IPR001451 from INTERPRO). The crystal structure of the type III enzyme from Escherichia coli with chloramphenicol bound has been determined. CAT is a trimer of identical subunits (monomer Mr 25,000) and the trimeric structure is stabilised by a number of hydrogen bonds, some of which result in the extension of a beta-sheet across the subunit interface. Chloramphenicol binds in a deep pocket located at the boundary between adjacent subunits of the trimer, such that the majority of residues forming the binding pocket belong to one subunit while the catalytically essential histidine belongs to the adjacent subunit. His195 is appropriately positioned to act as a general base catalyst in the reaction, and the required tautomeric stabilisation is provided by an unusual interaction with a main-chain carbonyl oxygen [].; GO: 0008811 chloramphenicol O-acetyltransferase activity; PDB: 1CIA_A 4CLA_A 1QCA_A 2CLA_A 1CLA_A 3CLA_A 3U9F_K 1PD5_F 1Q23_F 3U9B_F ....
Probab=97.44 E-value=0.0017 Score=63.65 Aligned_cols=139 Identities=13% Similarity=0.106 Sum_probs=95.3
Q ss_pred CCcceEEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceeeCC-eeEEcCCccEEEEeec
Q 010531 338 QTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADE-YIRQFKNVNINVAVQT 416 (508)
Q Consensus 338 ~~iP~~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~~~-~I~~~~~vnIgVAVdt 416 (508)
..-|.+.++.++|+|+|.+..++ .++++...++.++.+|+-++|+++-++.++ .+.+|+.++.+.+|-.
T Consensus 23 ~~~p~~svT~~lDvT~l~~~~K~----------~~~~Ff~~~ly~i~ka~N~~~efR~ri~~~g~v~~~d~i~ps~Tv~~ 92 (206)
T PF00302_consen 23 FDNPYFSVTVNLDVTNLYKYAKE----------KGLSFFPAYLYAIMKAANEIPEFRYRIVDDGEVVYYDRIDPSYTVFH 92 (206)
T ss_dssp TSBEEEEEEEEEE-HHHHHHHHH----------TT--HHHHHHHHHHHHHTTSGGGCEEEETTSCEEEESS-EEEEEEEE
T ss_pred CCCceEecceeEEhHHHHHHHHH----------cCCCcHHHHHHHHHHHHhcCHHHheeeeCCCcEEEECCcceeeeEEe
Confidence 45689999999999999876543 247899999999999999999999999988 9999999999999875
Q ss_pred -CCceEeeeecccccCCHHHHHHHHHHHHHHHHcC-CCCCCc-cCCCeEEecCCCCC-------Cccccccccceeeehh
Q 010531 417 -ENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDN-SLKPQD-YELPIWEDPSASSN-------SVPLSILLNLAFLQLD 486 (508)
Q Consensus 417 -~~GLvvPVIrdAd~ksL~eIa~ei~~L~~kAr~g-kL~~~d-l~GGTFTISN~Gsl-------Gg~fGi~~~~Pil~~~ 486 (508)
+++.+.-+-- .-..++.++.++.....+++++. .+.++. ...-.|-+|++=-+ ....+...+.|++.++
T Consensus 93 ~~~~tFs~~~~-~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~S~lPW~~FTs~~~~~~~~~~~~~P~it~G 171 (206)
T PF00302_consen 93 KDDETFSFCWT-EYDEDFEEFYANYEADIERYKESKGLFPKPNDPDNLIYISCLPWVSFTSFSHPVPNGKDDSIPRITWG 171 (206)
T ss_dssp TTTTEEEEEEE----SSHHHHHHHHHHHHHHHTTS-SSSTTCCHHSSEEEEEEETTS--SEEEEEESSTTT-SS-EEEEE
T ss_pred CCCCeEEEEEe-cCCCCHHHHHHHHHHHHHHHhccccccCCCCCCcCEEEEecccceecccccccccCCCcccccEEEee
Confidence 4566553322 23558999999999999988764 465543 34456777752111 1112233567888777
Q ss_pred h
Q 010531 487 L 487 (508)
Q Consensus 487 ~ 487 (508)
-
T Consensus 172 K 172 (206)
T PF00302_consen 172 K 172 (206)
T ss_dssp -
T ss_pred e
Confidence 3
No 64
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=97.39 E-value=0.00035 Score=72.86 Aligned_cols=35 Identities=9% Similarity=0.058 Sum_probs=31.5
Q ss_pred eEEecCCCeEEEEEEecCCCeeeecCCEEEEEeccC
Q 010531 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (508)
Q Consensus 162 ~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~ 197 (508)
..|.||++|+|.++.+++|+ .|..|++|+.+++.+
T Consensus 209 ~~I~AP~dG~V~~~~~~~G~-~V~~g~~l~~I~~~~ 243 (346)
T PRK10476 209 TTVRAPFDGRVVGLKVSVGE-FAAPMQPIFTLIDTD 243 (346)
T ss_pred CEEECCCCcEEEeeecCCCC-CcCCCCeEEEEecCC
Confidence 36999999999999999997 999999999987653
No 65
>PRK01202 glycine cleavage system protein H; Provisional
Probab=97.27 E-value=0.0004 Score=62.93 Aligned_cols=36 Identities=28% Similarity=0.386 Sum_probs=34.5
Q ss_pred cCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEE
Q 010531 141 KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (508)
Q Consensus 141 ~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~ 176 (508)
++|+.|++||++++||++|+..+|.||.+|+|.++.
T Consensus 46 ~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN 81 (127)
T PRK01202 46 EVGDEVKAGETFGVVESVKAASDIYAPVSGEVVEVN 81 (127)
T ss_pred CCCCEecCCCEEEEEEEcceeeeeecCCCeEEEEEh
Confidence 679999999999999999999999999999999983
No 66
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=97.24 E-value=0.00066 Score=72.32 Aligned_cols=35 Identities=14% Similarity=0.204 Sum_probs=31.6
Q ss_pred eEEecCCCeEEEEEEecCCCeeeecCCEEEEEeccC
Q 010531 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (508)
Q Consensus 162 ~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~ 197 (508)
..|.||++|+|..+.+++|+ .|..|++|+.+++.+
T Consensus 216 t~I~AP~dG~V~~~~v~~G~-~V~~g~pl~~Iv~~~ 250 (390)
T PRK15136 216 TKIVSPMTGYVSRRSVQVGA-QISPTTPLMAVVPAT 250 (390)
T ss_pred CEEECCCCeEEEEEecCCCC-EeCCCCeEEEEEeCC
Confidence 46999999999999999997 999999999987643
No 67
>TIGR00527 gcvH glycine cleavage system H protein. The genome of Aquifex aeolicus contains one protein scoring above the trusted cutoff and clustering with other bacterial H proteins, and four more proteins clustering together and scoring below the trusted cutoff; it seems doubtful that all of these homologs are authentic H protein. The Chlamydial homolog of H protein is nearly as divergent as the Aquifex outgroup, is not accompanied by P and T proteins, is not included in the seed alignment, and consequently also scores below the trusted cutoff.
Probab=97.23 E-value=0.00044 Score=62.71 Aligned_cols=38 Identities=26% Similarity=0.325 Sum_probs=35.3
Q ss_pred ccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEe
Q 010531 140 KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVK 177 (508)
Q Consensus 140 v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~ 177 (508)
.++|+.|++||+++.||++|+..+|.||.+|+|.++..
T Consensus 44 p~~G~~v~~g~~~~~IEs~K~~~~i~sPvsG~Vv~vN~ 81 (127)
T TIGR00527 44 PEVGAEVSAGESCGSVESVKAASDIYAPVSGTVVEVND 81 (127)
T ss_pred CCCCCEecCCCEEEEEEEeeeeeeeecCCcEEEEEehH
Confidence 36899999999999999999999999999999998753
No 68
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=97.21 E-value=0.00063 Score=70.50 Aligned_cols=34 Identities=12% Similarity=0.171 Sum_probs=30.9
Q ss_pred eEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 162 ~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
..|.||++|+|..+.+.+|+ .|..|++|+.+.+.
T Consensus 204 ~~I~AP~dG~V~~~~~~~G~-~V~~G~~l~~I~~~ 237 (331)
T PRK03598 204 TELIAPSDGTILTRAVEPGT-MLNAGSTVFTLSLT 237 (331)
T ss_pred CEEECCCCeEEEeccCCCCC-CcCCCCeEEEEecC
Confidence 47999999999999999997 99999999988654
No 69
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=97.17 E-value=0.00082 Score=71.20 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=54.9
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecce--------------------------------------------------
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA-------------------------------------------------- 160 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa-------------------------------------------------- 160 (508)
..|.|.++++++||.|++||+|+.+++.-.
T Consensus 70 v~G~V~~v~v~~Gd~VkkGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~~~~iS~~~~~~~~~~~~ 149 (385)
T PRK09578 70 VAGIVTARTYEEGQEVKQGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVRDRAVSERDYTEAVADER 149 (385)
T ss_pred CcEEEEEEECCCCCEEcCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 459999999999999999999999987311
Q ss_pred ---------------------eeEEecCCCeEEEEEEecCCCeeeecC--CEEEEEecc
Q 010531 161 ---------------------TVEMECMEEGYLAKIVKGDGSKEIKVG--EVIAITVEE 196 (508)
Q Consensus 161 ---------------------~~ei~ap~~G~v~~i~~~eG~~~v~vG--~~la~i~~~ 196 (508)
-..|.||++|+|.+.++++|+ .|..| ++|+.+.+.
T Consensus 150 ~a~a~~~~a~a~l~~a~~~l~~~~I~AP~dGvV~~~~v~~G~-~V~~g~~~~l~~i~~~ 207 (385)
T PRK09578 150 QAKAAVASAKAELARAQLQLDYATVTAPIDGRARRALVTEGA-LVGQDQATPLTTVEQL 207 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEECCCCeEEEeeecCCCC-eecCCCCcceEEEEec
Confidence 136999999999999999997 99886 588877543
No 70
>PRK13757 chloramphenicol acetyltransferase; Provisional
Probab=97.12 E-value=0.0087 Score=59.17 Aligned_cols=136 Identities=10% Similarity=0.060 Sum_probs=96.9
Q ss_pred ceEEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceeeCCeeEEcCCccEEEEeecCC-c
Q 010531 341 PHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTEN-G 419 (508)
Q Consensus 341 P~~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~~~~I~~~~~vnIgVAVdt~~-G 419 (508)
|+|.+++++|+|+|.+..++ .++++...++.|+..|+-++|+++-++.++.+..++.++.+.++-..+ +
T Consensus 31 ~~fsiT~~iDiT~l~~~~K~----------~~~~fy~~~ly~v~kavN~~~eFR~r~~~~~v~~~D~i~ps~Ti~~~~~~ 100 (219)
T PRK13757 31 CTYNQTVQLDITAFLKTVKK----------NKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIWDSVHPCYTVFHEQTE 100 (219)
T ss_pred CceEEEEEEEHHHHHHHHHH----------cCCChHHHHHHHHHHHHhcCHhHheEEECCeEEEEeEEeeeEEEEeCCCc
Confidence 44999999999999865433 247788899999999999999999999999999999999999987554 4
Q ss_pred eEeeeecccccCCHHHHHHHHHHHHHHHHcC-CCCCCccCCCeEEecCCCC-------CCccccccccceeeehhh
Q 010531 420 LYVPVIRDADKKGLSTIAEEVRQLAQKAKDN-SLKPQDYELPIWEDPSASS-------NSVPLSILLNLAFLQLDL 487 (508)
Q Consensus 420 LvvPVIrdAd~ksL~eIa~ei~~L~~kAr~g-kL~~~dl~GGTFTISN~Gs-------lGg~fGi~~~~Pil~~~~ 487 (508)
.+.- +.-.-.-++.++.+.....++++.+. .+-+.....-.|-||.+== +-...+...++|++..+-
T Consensus 101 tFs~-~~~~y~~df~~F~~~~~~~~~~~~~~~~~~~~~~~~n~~~iS~iPW~sFTs~~~~~~~~~~~~~P~it~GK 175 (219)
T PRK13757 101 TFSS-LWSEYHDDFRQFLHIYSQDVACYGENLAYFPKGFIENMFFVSANPWVSFTSFDLNVANMDNFFAPVFTMGK 175 (219)
T ss_pred eEEE-EEecCcCCHHHHHHHHHHHHHHHhcCccccCCCCCCCeEEeecccCcCccccccccccCCCCcCcEEEeec
Confidence 5542 22333567888888888888888876 4655544445676654210 111122335678887774
No 71
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=96.97 E-value=0.0018 Score=68.66 Aligned_cols=65 Identities=18% Similarity=0.206 Sum_probs=55.0
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecc---------------------------------------------------
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK--------------------------------------------------- 159 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdK--------------------------------------------------- 159 (508)
..|.|.+.++++||.|++||+|++++..-
T Consensus 68 v~G~V~~i~v~~G~~VkkGqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~~~is~~~~d~a~~~~~ 147 (385)
T PRK09859 68 VGGIIIKRNFIEGDKVNQGDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKTNYVSRQDYDTARTQLN 147 (385)
T ss_pred CcEEEEEEEcCCcCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 35999999999999999999999998630
Q ss_pred --------------------eeeEEecCCCeEEEEEEecCCCeeeecCC--EEEEEecc
Q 010531 160 --------------------ATVEMECMEEGYLAKIVKGDGSKEIKVGE--VIAITVEE 196 (508)
Q Consensus 160 --------------------a~~ei~ap~~G~v~~i~~~eG~~~v~vG~--~la~i~~~ 196 (508)
....|.||++|+|.+..++.|+ .|.+|+ +|+.+.+.
T Consensus 148 ~a~a~~~~a~a~l~~a~~~L~~t~I~APfdG~V~~~~v~~G~-~V~~g~~~~l~~i~~~ 205 (385)
T PRK09859 148 EAEANVTVAKAAVEQATINLQYANVTSPITGVSGKSSVTVGA-LVTANQADSLVTVQRL 205 (385)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCEEECCCCeEEcceecCCCC-eECCCCCcceEEEEec
Confidence 1147999999999999999997 999985 68777543
No 72
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=96.93 E-value=0.0016 Score=49.45 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=29.9
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 161 ~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
++.|.+|.+|+|.++++++|+ .|+.|++|+++..
T Consensus 2 ~~~I~~~~~G~V~~v~V~~G~-~VkkGd~L~~ld~ 35 (50)
T PF13533_consen 2 TVTIQAPVSGRVESVYVKEGQ-QVKKGDVLLVLDS 35 (50)
T ss_pred eEEEeCCCCEEEEEEEecCCC-EEcCCCEEEEECc
Confidence 367899999999999999997 8999999998843
No 73
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=96.89 E-value=0.0023 Score=68.26 Aligned_cols=65 Identities=20% Similarity=0.289 Sum_probs=54.3
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecc---------------------------------------------------
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK--------------------------------------------------- 159 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdK--------------------------------------------------- 159 (508)
..|.|.+.++++||.|++||+|++|+...
T Consensus 72 vsG~V~~v~v~~Gd~VkkGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~g~is~~~~d~a~~~~~ 151 (397)
T PRK15030 72 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 151 (397)
T ss_pred CcEEEEEEEcCCCCEecCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHH
Confidence 34999999999999999999999998521
Q ss_pred --------------------eeeEEecCCCeEEEEEEecCCCeeeecCCE--EEEEecc
Q 010531 160 --------------------ATVEMECMEEGYLAKIVKGDGSKEIKVGEV--IAITVEE 196 (508)
Q Consensus 160 --------------------a~~ei~ap~~G~v~~i~~~eG~~~v~vG~~--la~i~~~ 196 (508)
-...|.||++|+|.+..+++|+ .|..|++ |+.+.+.
T Consensus 152 ~a~a~~~~a~a~l~~a~~~l~~t~I~APfdG~V~~~~v~~G~-~V~~g~~~~l~~i~~~ 209 (397)
T PRK15030 152 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGA-LVQNGQATALATVQQL 209 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCEEEcCCCeEEeeeecCCCC-EECCCCCceEEEEEec
Confidence 0135999999999999999997 9999985 6666543
No 74
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like
Probab=96.87 E-value=0.0011 Score=50.38 Aligned_cols=29 Identities=28% Similarity=0.484 Sum_probs=26.4
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecc
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdK 159 (508)
..|+|.+|+|++||.|++||+|+++++..
T Consensus 9 ~~G~V~~v~V~~G~~VkkGd~L~~ld~~~ 37 (50)
T PF13533_consen 9 VSGRVESVYVKEGQQVKKGDVLLVLDSPD 37 (50)
T ss_pred CCEEEEEEEecCCCEEcCCCEEEEECcHH
Confidence 36999999999999999999999998754
No 75
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=96.80 E-value=0.0032 Score=66.29 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=53.7
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEecc----------------------------------------------------
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETDK---------------------------------------------------- 159 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetdK---------------------------------------------------- 159 (508)
.|.|.++++++||.|++||+|++++..-
T Consensus 69 ~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~~~l~~a~~~l~~a~~~~~r~~~L~~~g~is~~~~~~ 148 (370)
T PRK11578 69 SGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTLSRQQRLAKTQAVSQQDLDT 148 (370)
T ss_pred ceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 4999999999999999999999998731
Q ss_pred ---------------------------------eeeEEecCCCeEEEEEEecCCCeeeecC---CEEEEEecc
Q 010531 160 ---------------------------------ATVEMECMEEGYLAKIVKGDGSKEIKVG---EVIAITVEE 196 (508)
Q Consensus 160 ---------------------------------a~~ei~ap~~G~v~~i~~~eG~~~v~vG---~~la~i~~~ 196 (508)
....|.||++|+|..+.+..|+ .|..| ++|+.+.+.
T Consensus 149 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~I~AP~dG~V~~~~~~~G~-~V~~~~~~~~l~~i~~~ 220 (370)
T PRK11578 149 AATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQ-TVIAAQQAPNILTLADM 220 (370)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCEEECCCCcEEEeeecCCCc-EeecccCCceEEEEecC
Confidence 0136999999999999999997 88766 478877554
No 76
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. A lipoyl group is attached to a completely conserved lysine residue. The H protein shuttles the methylamine group of glycine from the P protein to the T protein [].; GO: 0006546 glycine catabolic process, 0005960 glycine cleavage complex; PDB: 3KLR_A 2EDG_A 1ONL_B 2KA7_A 1ZKO_A 3TZU_C 3MXU_A 3A8I_F 3A8J_E 3A7A_B ....
Probab=96.78 E-value=0.0029 Score=56.94 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=31.6
Q ss_pred ccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEE
Q 010531 140 KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (508)
Q Consensus 140 v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~ 176 (508)
.++|+.|++|++++.||++|...++.||.+|+|.++.
T Consensus 39 p~~g~~~~~g~~~~~ies~k~~~~l~sPvsG~Vv~vN 75 (122)
T PF01597_consen 39 PKVGTKLKKGDPFASIESSKAVSDLYSPVSGTVVEVN 75 (122)
T ss_dssp B-TT-EE-TTSEEEEEEESSEEEEEEESSSEEEEEE-
T ss_pred ccCCCEEecCCcEEEEEECceeeecccceEEEEEEEc
Confidence 4679999999999999999999999999999999885
No 77
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=96.75 E-value=0.0027 Score=68.22 Aligned_cols=64 Identities=19% Similarity=0.339 Sum_probs=53.8
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecc---------------------------------------------------
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK--------------------------------------------------- 159 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdK--------------------------------------------------- 159 (508)
..|.|.++++++||.|++||+|+++...-
T Consensus 94 vsG~V~~i~v~eG~~VkkGq~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~~g~is~~~ld~~~~~~~ 173 (415)
T PRK11556 94 VDGQLMALHFQEGQQVKAGDLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAKTNLVSRQELDAQQALVS 173 (415)
T ss_pred ccEEEEEEECCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHH
Confidence 46999999999999999999999997531
Q ss_pred --------------------eeeEEecCCCeEEEEEEecCCCeeeecCC--EEEEEec
Q 010531 160 --------------------ATVEMECMEEGYLAKIVKGDGSKEIKVGE--VIAITVE 195 (508)
Q Consensus 160 --------------------a~~ei~ap~~G~v~~i~~~eG~~~v~vG~--~la~i~~ 195 (508)
-...|.||++|+|....++.|+ .|..|+ +|+.+.+
T Consensus 174 ~a~a~l~~a~a~l~~a~~~L~~~~I~AP~~G~V~~~~v~~G~-~V~~g~~~~l~~i~~ 230 (415)
T PRK11556 174 ETEGTIKADEASVASAQLQLDYSRITAPISGRVGLKQVDVGN-QISSGDTTGIVVITQ 230 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEeccCcCCCc-eecCCCCceeEEEec
Confidence 0236999999999999999997 999985 6776654
No 78
>PRK12784 hypothetical protein; Provisional
Probab=96.73 E-value=0.0086 Score=49.43 Aligned_cols=63 Identities=14% Similarity=0.125 Sum_probs=57.0
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEec-ceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETD-KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetd-Ka~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
-.|+|.+.++.+++.|-+-++|+-|+++ +....|.--.+|.|..+.+++|+ .|..+..|+++.
T Consensus 12 ~~G~Vekifi~esSyVYEWEkL~~I~~~dg~le~v~vGiSG~I~~v~Ve~Gq-~i~~dtlL~~~e 75 (84)
T PRK12784 12 YEGKVEEIFVNESSYVYEWEKLMMIRKNNGELEKVAVGISGNIRLVNVVVGQ-QIHTDTLLVRLE 75 (84)
T ss_pred cccEEEEEEEcCCceEEeeeeeeEEeecCCcEEEEEEeeeeeEEEEEeecCc-eecCCcEEEEEe
Confidence 4689999999999999999999999994 55556899999999999999997 899999999874
No 79
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=96.47 E-value=0.0058 Score=63.00 Aligned_cols=32 Identities=22% Similarity=0.169 Sum_probs=27.6
Q ss_pred EEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 163 EMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 163 ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
.|.||++|+|..+.+.+|+ .|.. ++|+.+.+.
T Consensus 206 ~i~AP~dG~V~~~~~~~G~-~v~~-~~l~~i~~~ 237 (327)
T TIGR02971 206 YVKAPIDGRVLKIHAREGE-VIGS-EGILEMGDT 237 (327)
T ss_pred EEECCCCeEEEEEecCCCC-ccCC-CccEEEecC
Confidence 5889999999999999997 8876 888887654
No 80
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=96.46 E-value=0.0031 Score=57.23 Aligned_cols=44 Identities=30% Similarity=0.377 Sum_probs=37.5
Q ss_pred EEEEEE-EccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEE
Q 010531 133 GNIARW-LKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (508)
Q Consensus 133 g~I~~W-~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~ 176 (508)
|.|+.. +.++|+.|++|+.++.||+-|+..+|.||.+|.|.++.
T Consensus 39 Gdiv~Velpe~G~~v~~g~~~~~vESvKaasdvyaPvsGeVvevN 83 (131)
T COG0509 39 GDIVFVELPEVGAEVKAGESLAVVESVKAASDVYAPVSGEVVEVN 83 (131)
T ss_pred CCEEEEEcCCCCCeecCCCeEEEEEeeeeeccccCCCceeEEEec
Confidence 334333 45789999999999999999999999999999998764
No 81
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=96.41 E-value=0.0022 Score=65.35 Aligned_cols=26 Identities=42% Similarity=0.657 Sum_probs=20.1
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEe
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVET 157 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVet 157 (508)
.+|.| +|++++||.|++||+|+++++
T Consensus 28 ~~G~v-~~~v~~G~~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 28 VSGRV-SVNVKEGDKVKKGQVLAELDS 53 (328)
T ss_dssp S-EEE-EE-S-TTSEEETT-EEEEEE-
T ss_pred CCEEE-EEEeCCcCEECCCCEEEEEEC
Confidence 35999 999999999999999999987
No 82
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=96.24 E-value=0.013 Score=59.07 Aligned_cols=55 Identities=25% Similarity=0.341 Sum_probs=48.1
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
+|.+ +..++.||.|++||+|+.|+. .+|.||.+|+|..+ .++|- .|+.|--|+.+
T Consensus 172 ~Gi~-~~~~~IGd~V~KGqvLa~I~~----~~V~APidGIVrGl-irdG~-~V~~G~Ki~dI 226 (256)
T TIGR03309 172 DGIV-TPTKAIGDSVKKGDVIATVGD----VPVVAPIDGLLRGL-IHEGL-TVTEGLKIGDV 226 (256)
T ss_pred CeEE-eeccCCCCEEeCCCEEEEEcC----EEEEccCCeEEEEE-ecCCC-CcCCCCEEEEE
Confidence 3444 459999999999999999974 79999999999987 58997 89999999987
No 83
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=95.55 E-value=0.04 Score=58.23 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=29.0
Q ss_pred EEecCCCeEEEEEEe-cCCCeeeecCCEEEEEecc
Q 010531 163 EMECMEEGYLAKIVK-GDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 163 ei~ap~~G~v~~i~~-~eG~~~v~vG~~la~i~~~ 196 (508)
.|.||++|+|..+.+ ..|+ .|..|++|+.+.+.
T Consensus 273 ~i~AP~dG~V~~~~~~~~G~-~v~~g~~l~~i~~~ 306 (423)
T TIGR01843 273 IIRSPVDGTVQSLKVHTVGG-VVQPGETLMEIVPE 306 (423)
T ss_pred EEECCCCcEEEEEEEEccCc-eecCCCeeEEEecC
Confidence 499999999999876 6997 99999999998754
No 84
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional
Probab=95.41 E-value=0.033 Score=45.01 Aligned_cols=32 Identities=13% Similarity=0.303 Sum_probs=29.3
Q ss_pred EEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 163 EMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 163 ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
.|.||..|+|.++++++|+ .|..|++|+.+..
T Consensus 4 ~v~a~~~G~i~~~~v~~Gd-~V~~g~~l~~ve~ 35 (71)
T PRK05889 4 DVRAEIVASVLEVVVNEGD-QIGKGDTLVLLES 35 (71)
T ss_pred EEeCCCCEEEEEEEeCCCC-EECCCCEEEEEEe
Confidence 4899999999999999997 9999999998743
No 85
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=95.34 E-value=0.022 Score=49.75 Aligned_cols=56 Identities=27% Similarity=0.380 Sum_probs=43.3
Q ss_pred eEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEec
Q 010531 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKG 178 (508)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~ 178 (508)
..+.+| |.. .-|.-.+-+|++||.|.+||.|++.+ +-....|-||.+|+|..|.-.
T Consensus 28 ~~v~ip-L~q--h~G~~~~p~V~~Gd~V~~GQ~Ia~~~-~~~sa~iHAsvSG~V~~I~~~ 83 (101)
T PF13375_consen 28 KKVVIP-LRQ--HIGAPAEPVVKVGDKVKKGQLIAEAE-GFLSAPIHASVSGTVTAIEKR 83 (101)
T ss_pred CEEEEE-Ccc--cCCCcceEEEcCCCEEcCCCEEEecC-CCcEeeEEcCCCeEEEEEeee
Confidence 355555 222 23455577899999999999999997 566889999999999998543
No 86
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.26 E-value=0.06 Score=55.56 Aligned_cols=59 Identities=22% Similarity=0.225 Sum_probs=48.3
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEe---cceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVET---DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVet---dKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
.+=+...+++.||.|++||+|++|=. +....+|.||.+|+|.-+. ..- .|..|+.|+.|
T Consensus 236 ~~Gl~~~~~~~G~~V~~Gq~lg~i~dp~~g~~~~~v~Ap~dGiv~~~~--~~p-~v~~G~~l~~i 297 (298)
T cd06253 236 TSGIFVPAKHLGDIVKRGDVIGEIVDPLEGEVIEEVIAPCDGILFTLR--EYP-LVYEGSLVARI 297 (298)
T ss_pred CCeEEEECcCCCCEECCCCEEEEEeCCCCCCeeEEEEcCCCeEEEEee--cCC-eecCCceEEEe
Confidence 34566788999999999999999954 4567889999999997654 444 79999999876
No 87
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=95.03 E-value=0.073 Score=54.50 Aligned_cols=58 Identities=22% Similarity=0.334 Sum_probs=45.7
Q ss_pred EEEEEEEccCCCeeCCCCeEEEEEe--cceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 133 GNIARWLKKEGDKVSPGEVLCEVET--DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 133 g~I~~W~v~~Gd~V~~gd~L~eVet--dKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
+=+.++.++.||.|++||+|++|-. .....+|.||.+|+|.-+. ..- .|..|+.|+.+
T Consensus 227 ~G~~~~~~~~Gd~V~~G~~ig~i~d~~~~~~~~v~ap~~G~v~~~~--~~~-~v~~G~~l~~i 286 (287)
T cd06251 227 GGLLRSLVKLGDKVKKGQLLATITDPFGEEEAEVKAPFDGIVIGRN--NLP-LVNEGDALFHI 286 (287)
T ss_pred CeEEEEecCCCCEECCCCEEEEEECCCCCceEEEECCCCeEEEEec--CCC-ccCCCCEEEEe
Confidence 3456789999999999999999964 2334789999999997654 333 68999999875
No 88
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=94.96 E-value=0.071 Score=56.47 Aligned_cols=59 Identities=24% Similarity=0.384 Sum_probs=47.4
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEe----cceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVet----dKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
.+=+..++++.||.|++||+|++|=. +....+|.||.+|+|.-+ ...- .|..|+.|+.|
T Consensus 296 ~~Gl~~~~~~~Gd~V~~G~~lg~I~d~~g~~~~~~~v~Ap~dGiv~~~--~~~~-~V~~G~~l~~I 358 (359)
T cd06250 296 AGGMVVYRAAPGDWVEAGDVLAEILDPLGDGVGPVEIRAPTDGLLFAR--ASRR-FVRAGDELAKI 358 (359)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCccceeEEECCCCcEEEEe--cCCc-cccCCCeEEEe
Confidence 45677899999999999999999854 345555799999999755 4554 79999999875
No 89
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=94.92 E-value=0.03 Score=44.97 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=24.8
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEE
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVe 156 (508)
.+|+|.+|++++||.|..||+|++||
T Consensus 45 ~~G~v~~~~~~~G~~V~~g~~l~~ie 70 (70)
T PRK08225 45 EAGTVKKINVQEGDFVNEGDVLLEIE 70 (70)
T ss_pred CCEEEEEEEecCCCEECCCCEEEEEC
Confidence 67999999999999999999999986
No 90
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms]
Probab=94.52 E-value=0.23 Score=48.38 Aligned_cols=103 Identities=13% Similarity=0.156 Sum_probs=81.5
Q ss_pred CCcceEEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceeeCCeeEEcCCccEEEEeecC
Q 010531 338 QTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAVQTE 417 (508)
Q Consensus 338 ~~iP~~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~~~~I~~~~~vnIgVAVdt~ 417 (508)
...||+.+....|++.+-.. +++ ..++++.+++.|+.+++.++++++-++.++.+.+++.++..+.|..+
T Consensus 26 ~~~p~y~i~~~LDvtn~~~~---vk~-------~~l~Ff~a~l~avtr~~n~~~EFRlr~~~~~~~~~d~v~p~~tv~~~ 95 (219)
T COG4845 26 LQYPHYDINLQLDVTNFYGY---VKE-------NGLSFFPALLYAVTRCANRHQEFRLRIQNGQLGYWDNVPPMYTVFHG 95 (219)
T ss_pred cccceEeeeeeeehhHHHHH---HHH-------cCCcchHHHHHHHHHHhcccHHhHhhhcCCeeEEeecCCcceEEEcC
Confidence 56899999999998876444 331 25899999999999999999999999999999999999999999885
Q ss_pred C-ceEeeeecccccCCHHHHHHHHHHHHHHHHcCC
Q 010531 418 N-GLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNS 451 (508)
Q Consensus 418 ~-GLvvPVIrdAd~ksL~eIa~ei~~L~~kAr~gk 451 (508)
+ +++.-+--+ -..+..++.+....=+++.+++.
T Consensus 96 ~~e~Fs~l~~e-~~~~~~dF~q~y~~~ie~~~~~~ 129 (219)
T COG4845 96 ETETFSVLWTE-YQEDYEDFAQLYIEDIEQYGANN 129 (219)
T ss_pred CCcEEEEEecc-ccccHHHHHHHHHHHHHHhccCc
Confidence 4 555533322 56788888777766666766654
No 91
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=94.32 E-value=0.12 Score=54.16 Aligned_cols=58 Identities=31% Similarity=0.412 Sum_probs=46.5
Q ss_pred EEEEEEEccCCCeeCCCCeEEEEEe----cceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 133 GNIARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 133 g~I~~W~v~~Gd~V~~gd~L~eVet----dKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
+=+....++.||.|++||+|++|=. .....+|.||.+|+|.-+. ..- .|..|+.|+.+
T Consensus 263 ~Gi~~~~v~~G~~V~~G~~lg~I~d~~~~G~~~~~i~Ap~dGiV~~~~--~~~-~V~~Gd~l~~i 324 (325)
T TIGR02994 263 DGLIEFMIDLGDPVSKGDVIARVYPVGRTGVAPVEYRAKRDGLLAARH--FPG-LIKSGDCIAVL 324 (325)
T ss_pred CeEEEEecCCCCEeCCCCEEEEEECCCCCCCceEEEEeCCCcEEEEEe--CCC-ccCCCCEEEEe
Confidence 4455788999999999999999964 2346789999999998654 443 69999999875
No 92
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=94.30 E-value=0.16 Score=52.69 Aligned_cols=60 Identities=22% Similarity=0.323 Sum_probs=47.4
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEe----cceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVet----dKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
.+=+....++.||.|++||+|++|-. ....-+|.||.+|+|.-+. ..- .|..|+.|+.+.
T Consensus 251 ~~G~~~~~~~~G~~V~~G~~lg~i~d~~~~g~~~~~v~Ap~~Giv~~~~--~~~-~v~~G~~l~~i~ 314 (316)
T cd06252 251 HPGLFEPLVDLGDEVSAGQVAGRIHFPERPGRPPLEIRAPDGGVLAARR--PPG-LVRRGDCLAVLA 314 (316)
T ss_pred CCeEEEEecCCCCEEcCCCEEEEEECCCCCCCceEEEEcCCCeEEEEee--CCC-ccCCCCEEEEEe
Confidence 34567888999999999999999864 3456789999999997543 333 688999998764
No 93
>COG3608 Predicted deacylase [General function prediction only]
Probab=94.15 E-value=0.12 Score=53.90 Aligned_cols=62 Identities=19% Similarity=0.376 Sum_probs=51.6
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEe---cceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVET---DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVet---dKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
+++=+++.+++.||.|++||+|+.|=. -+...||.|+.+|+|..+. ..+ .|+.|+.++++..
T Consensus 262 p~~G~v~~~v~lGd~VeaG~~la~i~~~~~~~~~~eirA~~~G~i~~~r-~~~--~v~~Gdl~~~v~~ 326 (331)
T COG3608 262 PAGGLVEFLVDLGDKVEAGDVLATIHDPPLGEGEAEIRAPVSGIIIARR-SLR--LVQPGDLLKVVGR 326 (331)
T ss_pred CCCceEEEeecCCCcccCCCeEEEEecCCCCCcceEEEcCCCceEEEEe-ecc--ccCCCCeeeeecc
Confidence 466788999999999999999998865 4899999999999998875 333 5888888877653
No 94
>PRK06748 hypothetical protein; Validated
Probab=94.13 E-value=0.09 Score=44.36 Aligned_cols=31 Identities=16% Similarity=0.063 Sum_probs=29.2
Q ss_pred EecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 164 MECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 164 i~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
|.||..|.|.++++++|| .|..|++|+.+..
T Consensus 7 v~sp~~G~I~~w~vk~GD-~V~~gd~l~~IET 37 (83)
T PRK06748 7 VYSPCYGKVEKLFVRESS-YVYEWEKLALIET 37 (83)
T ss_pred EecCCcEEEEEEEeCCCC-EECCCCEEEEEEc
Confidence 899999999999999997 9999999999854
No 95
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase. This domain functions in transferring CO2 from one subsite to another, allowing carboxylation, decarboxylation, or transcarboxylation. During this process, biotin is covalently attached to a specific lysine.
Probab=93.61 E-value=0.11 Score=40.10 Aligned_cols=30 Identities=17% Similarity=0.401 Sum_probs=28.0
Q ss_pred EecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 164 MECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 164 i~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
|.||.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 2 v~a~~~G~v~~~~v~~G~-~v~~g~~l~~i~ 31 (67)
T cd06850 2 VTAPMPGTVVKVLVKEGD-KVEAGQPLAVLE 31 (67)
T ss_pred ccCCccEEEEEEEeCCCC-EECCCCEEEEEE
Confidence 689999999999999997 999999999874
No 96
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism]
Probab=93.59 E-value=0.11 Score=47.84 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=31.9
Q ss_pred eeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 160 ATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 160 a~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
....|.||..|++.++++++|| .|+.||+||++...
T Consensus 69 ~~~~V~SPm~Gtv~~~~V~vGd-~V~~Gq~l~IiEAM 104 (140)
T COG0511 69 GGTQVTSPMVGTVYKPFVEVGD-TVKAGQTLAIIEAM 104 (140)
T ss_pred cCceEecCcceEEEEEeeccCC-EEcCCCEEEEEEee
Confidence 3456999999999999999997 99999999998653
No 97
>PF13437 HlyD_3: HlyD family secretion protein
Probab=93.46 E-value=0.11 Score=44.35 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=20.8
Q ss_pred EecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 164 MECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 164 i~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
|.||++|+|..+.+++|+ .|..|++|+.+.+.
T Consensus 2 i~AP~~G~V~~~~~~~G~-~v~~g~~l~~i~~~ 33 (105)
T PF13437_consen 2 IRAPFDGVVVSINVQPGE-VVSAGQPLAEIVDT 33 (105)
T ss_pred EECCCCEEEEEEeCCCCC-EECCCCEEEEEEcc
Confidence 566666666666666665 66666666666543
No 98
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=93.15 E-value=0.096 Score=52.95 Aligned_cols=41 Identities=37% Similarity=0.584 Sum_probs=34.4
Q ss_pred EEEEccCCCeeCCCCeEEEEEeccee--eEEecCCCeEEEEEEecC
Q 010531 136 ARWLKKEGDKVSPGEVLCEVETDKAT--VEMECMEEGYLAKIVKGD 179 (508)
Q Consensus 136 ~~W~v~~Gd~V~~gd~L~eVetdKa~--~ei~ap~~G~v~~i~~~e 179 (508)
-+.+|+|||.|+.||+|++ ||-. +-+.||.+|+|.+|...+
T Consensus 41 Pkm~VkeGD~Vk~Gq~LF~---dK~~p~v~ftsPvsG~V~~I~RG~ 83 (257)
T PF05896_consen 41 PKMLVKEGDRVKAGQPLFE---DKKNPGVKFTSPVSGTVKAINRGE 83 (257)
T ss_pred ccEEeccCCEEeCCCeeEe---eCCCCCcEEecCCCeEEEEEecCC
Confidence 4789999999999999996 6655 448999999999987533
No 99
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=92.41 E-value=0.29 Score=50.07 Aligned_cols=56 Identities=18% Similarity=0.210 Sum_probs=41.0
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEe--cceeeEEecCCCeEEEEEEecCCCeeeecCCEE
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVET--DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVI 190 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVet--dKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~l 190 (508)
.+=+.+.+++.||.|++||+|++|=. .....+|.||.+|+|.-+. ..- .|..|+.|
T Consensus 230 ~~G~~~~~~~~G~~V~~G~~lg~i~dp~g~~~~~i~Ap~dG~v~~~~--~~~-~v~~G~~l 287 (288)
T cd06254 230 ASGLWYPFVKAGDTVQKGALLGYVTDYFGNVIAEYRAPFDGVVLYNT--ATL-PVRKGDPL 287 (288)
T ss_pred CCeEEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEee--CCC-ccCCCCcc
Confidence 44567788899999999999998832 2445679999999997653 332 56777665
No 100
>PRK07051 hypothetical protein; Validated
Probab=92.38 E-value=0.18 Score=41.82 Aligned_cols=27 Identities=30% Similarity=0.667 Sum_probs=25.0
Q ss_pred CCeEEEEEEEccCCCeeCCCCeEEEEE
Q 010531 130 MQEGNIARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~gd~L~eVe 156 (508)
-.+|+|.+|++++||.|+.||+|++++
T Consensus 53 ~~~G~v~~i~~~~G~~V~~G~~l~~i~ 79 (80)
T PRK07051 53 EAAGRVVEFLVEDGEPVEAGQVLARIE 79 (80)
T ss_pred CCCEEEEEEEcCCcCEECCCCEEEEEe
Confidence 457999999999999999999999986
No 101
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=92.22 E-value=0.21 Score=46.59 Aligned_cols=48 Identities=29% Similarity=0.361 Sum_probs=36.6
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecceeeE-EecCCCeEEEEEEec
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVE-MECMEEGYLAKIVKG 178 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~e-i~ap~~G~v~~i~~~ 178 (508)
.||..+-..+.+||.|.+||.|+-+.|-|-.+. +.||++|+|.=+.--
T Consensus 87 veG~~v~~i~~~G~rV~~gd~lA~v~T~KGeVR~iksp~~G~Vv~v~e~ 135 (150)
T PF09891_consen 87 VEGYQVYPIVDEGDRVRKGDRLAYVTTRKGEVRYIKSPVEGTVVFVIEI 135 (150)
T ss_dssp EESSEEEESS-TSEEE-TT-EEEEEE-TTS-EEEEE-SSSEEEEEEEEE
T ss_pred ecceEEEEEcccCcEeccCcEEEEEEecCcceEEecCCCcEEEEEEEec
Confidence 467778889999999999999999999999998 999999999866533
No 102
>PRK05035 electron transport complex protein RnfC; Provisional
Probab=91.71 E-value=0.3 Score=56.05 Aligned_cols=57 Identities=23% Similarity=0.346 Sum_probs=42.3
Q ss_pred CCceEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEE
Q 010531 116 PPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (508)
Q Consensus 116 ~~~~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~ 176 (508)
|....+.+| |... -|.-.+-+|++||+|.+||+|++-. .-..+.|.||.+|+|..|.
T Consensus 32 ~~p~~~~ip-l~qh--iG~~~~~~V~~GD~V~~GQ~i~~~~-~~~s~~vhApvSG~V~~I~ 88 (695)
T PRK05035 32 PLPQRLVIP-LKQH--IGAEGELCVKVGDRVLKGQPLTQGD-GRMSLPVHAPTSGTVVAIE 88 (695)
T ss_pred CCCCEEEEE-CccC--CCCCCcceeCcCCEEcCCCEeeecC-CCceeEEeCCCCeEEeeec
Confidence 334566666 3332 2444568899999999999999664 3467899999999999874
No 103
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=91.10 E-value=0.42 Score=43.68 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=30.9
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 161 ~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
...|.||.+|+|.++++.+|+ .|..|++|+.+..
T Consensus 61 ~~~v~Ap~~G~V~~i~V~~Gd-~V~~Gq~L~~lEa 94 (130)
T PRK06549 61 ADAMPSPMPGTILKVLVAVGD-QVTENQPLLILEA 94 (130)
T ss_pred CcEEECCCCEEEEEEEeCCCC-EECCCCEEEEEec
Confidence 566999999999999999997 9999999998843
No 104
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion]
Probab=91.08 E-value=1.3 Score=46.70 Aligned_cols=36 Identities=33% Similarity=0.628 Sum_probs=29.5
Q ss_pred eEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEec
Q 010531 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (508)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetd 158 (508)
+.+.+|. -..|+|.+.+|++||+|+.|+.|+.|++.
T Consensus 114 ~tv~V~s----P~sGvi~e~lvk~gdtV~~g~~la~i~~g 149 (457)
T KOG0559|consen 114 TTVEVPS----PASGVITELLVKDGDTVTPGQKLAKISPG 149 (457)
T ss_pred eeeeccC----CCcceeeEEecCCCCcccCCceeEEecCC
Confidence 3445553 34599999999999999999999999976
No 105
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit. This model represents the NqrA subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=90.99 E-value=0.2 Score=54.59 Aligned_cols=45 Identities=24% Similarity=0.319 Sum_probs=38.0
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEe
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVK 177 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~ 177 (508)
.|.--+-+|++||+|..||+|++-. .-..+.+.||.+|+|.+|..
T Consensus 37 ~G~~~k~~Vk~GD~V~~Gq~I~~~~-~~~s~~ihApvSGtV~~I~~ 81 (447)
T TIGR01936 37 VGMRPKMKVRPGDKVKAGQPLFEDK-KNPGVKFTSPVSGEVVAINR 81 (447)
T ss_pred CCCCCceEeCcCCEEcCCCEeEecC-CCceEEEEcCCCeEEEEEec
Confidence 3555678999999999999999876 33678899999999999953
No 106
>PRK10476 multidrug resistance protein MdtN; Provisional
Probab=90.83 E-value=0.43 Score=49.81 Aligned_cols=39 Identities=13% Similarity=0.278 Sum_probs=34.1
Q ss_pred EEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 153 CEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 153 ~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
+.||++ .+.|.++.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 42 ~~v~~~--~v~v~~~v~G~V~~v~V~~G~-~VkkGq~L~~ld 80 (346)
T PRK10476 42 AYIDAD--VVHVASEVGGRIVELAVTENQ-AVKKGDLLFRID 80 (346)
T ss_pred eEEEee--eEEEcccCceEEEEEEeCCCC-EEcCCCEEEEEC
Confidence 445554 688999999999999999997 999999999984
No 107
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=90.14 E-value=0.26 Score=49.63 Aligned_cols=33 Identities=21% Similarity=0.364 Sum_probs=23.5
Q ss_pred eEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 162 ~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
..|.+++.|+|.+|++++|+ .|+.|++|+.+.+
T Consensus 2 ~~Vq~~~~G~V~~i~V~eG~-~VkkGq~L~~LD~ 34 (305)
T PF00529_consen 2 KIVQSLVGGIVTEILVKEGQ-RVKKGQVLARLDP 34 (305)
T ss_dssp EEE--SS-EEEEEE-S-TTE-EE-TTSECEEE--
T ss_pred EEEeCCCCeEEEEEEccCcC-EEeCCCEEEEEEe
Confidence 57899999999999999997 9999999999854
No 108
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=89.95 E-value=0.39 Score=49.45 Aligned_cols=34 Identities=15% Similarity=0.235 Sum_probs=31.3
Q ss_pred eeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 160 ATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 160 a~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
-.+.|.|+.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 41 ~~~~v~a~~~G~V~~i~v~~G~-~V~kGq~L~~ld 74 (334)
T TIGR00998 41 NQLQVSSQVSGSVIEVNVDDTD-YVKQGDVLVRLD 74 (334)
T ss_pred ceEEEcccCceEEEEEEeCCCC-EEcCCCEEEEEC
Confidence 3678999999999999999997 999999999984
No 109
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=89.58 E-value=0.62 Score=43.71 Aligned_cols=32 Identities=22% Similarity=0.347 Sum_probs=29.6
Q ss_pred eEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 162 ~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
..|.||..|+|.++++++|| .|..||+|+.+.
T Consensus 85 ~~v~ap~~G~I~~~~V~~Gd-~V~~Gq~l~~iE 116 (153)
T PRK05641 85 NVVTAPMPGKILRILVREGQ-QVKVGQGLLILE 116 (153)
T ss_pred CEEECCCCeEEEEEEeCCCC-EEcCCCEEEEEe
Confidence 46899999999999999997 999999999874
No 110
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional
Probab=89.40 E-value=0.5 Score=51.60 Aligned_cols=43 Identities=30% Similarity=0.379 Sum_probs=36.3
Q ss_pred EEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEE
Q 010531 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (508)
Q Consensus 133 g~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~ 176 (508)
|.-.+-+|++||+|..||+|++-... ..+.+.||.+|+|..|.
T Consensus 39 G~~~~~~V~~GD~V~~Gq~I~~~~~~-~s~~~hspvSGtV~~I~ 81 (448)
T PRK05352 39 GLRPKMKVKEGDKVKKGQPLFEDKKN-PGVKFTSPASGTVVAIN 81 (448)
T ss_pred CCCCceEeCcCCEEcCCCEeEecCCC-ceEEEEcCCCeEEEEEc
Confidence 55567899999999999999965533 56889999999999994
No 111
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=88.90 E-value=0.65 Score=47.89 Aligned_cols=41 Identities=17% Similarity=0.354 Sum_probs=34.8
Q ss_pred EEEecceeeEEecCCC---eEEEEEEecCCCeeeecCCEEEEEec
Q 010531 154 EVETDKATVEMECMEE---GYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 154 eVetdKa~~ei~ap~~---G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
.|+...-.+.|.++.+ |+|.+|++++|+ .|+.|++|+.+..
T Consensus 6 ~v~p~~~~~~v~~~~~~~~G~V~~i~V~eG~-~V~~G~~L~~ld~ 49 (327)
T TIGR02971 6 RLEPEGEVVAVAAPSSGGTDRIKKLLVAEGD-RVQAGQVLAELDS 49 (327)
T ss_pred eEeecCceEEecCCCCCCCcEEEEEEccCCC-EecCCcEEEEecC
Confidence 4555555668999999 999999999997 9999999999843
No 112
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid. Biotin plays a catalytic role in some carboxyl transfer reactions and is covalently attached, via an amide bond, to a lysine residue in enzymes requiring this coenzyme []. E2 acyltransferases have an essential cofactor, lipoic acid, which is covalently bound via an amide linkage to a lysine group []. The lipoic acid cofactor is found in a variety of proteins that include, H-protein of the glycine cleavage system (GCS), mammalian and yeast pyruvate dehydrogenases and fast migrating protein (FMP) (gene acoC) from Ralstonia eutropha (Alcaligenes eutrophus).; PDB: 2EJG_D 2D5D_A 2EJF_C 2EVB_A 1IYV_A 1IYU_A 1LAC_A 1LAB_A 1DCZ_A 1DD2_A ....
Probab=88.72 E-value=0.54 Score=38.26 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=27.5
Q ss_pred EEecCCCeEEEE------EEecCCCeeeecCCEEEEEecc
Q 010531 163 EMECMEEGYLAK------IVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 163 ei~ap~~G~v~~------i~~~eG~~~v~vG~~la~i~~~ 196 (508)
+|.+|.-|.+.+ +++++|+ .|..|++|+.+..+
T Consensus 2 ~i~~P~~G~~~~~~~i~~~~v~~G~-~V~~G~~l~~iet~ 40 (74)
T PF00364_consen 2 EIKAPMLGEVMEEGTITKWLVEEGD-KVKKGDPLAEIETM 40 (74)
T ss_dssp EEEESSSSEEEEEEEEEEESSSTTE-EESTTSEEEEEESS
T ss_pred EEECCCCccEEEecceeEEEECCCC-EEEcCceEEEEEcC
Confidence 577888887665 9999997 99999999998543
No 113
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=88.61 E-value=0.78 Score=46.50 Aligned_cols=39 Identities=23% Similarity=0.368 Sum_probs=32.8
Q ss_pred EEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 154 EVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 154 eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
.|+..+ +..|.+|.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 20 ~v~~~~-~~~v~a~~~G~V~~i~v~~G~-~V~kG~~L~~l~ 58 (322)
T TIGR01730 20 SLEAVD-EADLAAEVAGKITKISVREGQ-KVKKGQVLARLD 58 (322)
T ss_pred EEEEee-EEEEEccccEEEEEEEcCCCC-EEcCCCEEEEEC
Confidence 344333 467999999999999999997 999999999884
No 114
>TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the C subunit.
Probab=88.55 E-value=0.42 Score=51.89 Aligned_cols=43 Identities=23% Similarity=0.315 Sum_probs=36.7
Q ss_pred EEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEE
Q 010531 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (508)
Q Consensus 133 g~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~ 176 (508)
|.-.+-+|++||+|+.||+|++.+ ......|.||.+|+|.+|.
T Consensus 40 g~~~~~~V~~Gd~V~~Gq~i~~~~-~~~~~~~ha~vsG~V~~i~ 82 (435)
T TIGR01945 40 GAPAEPIVKVGDKVLKGQKIAKAD-GFVSAPIHAPTSGTVVAIE 82 (435)
T ss_pred CCCCceeeCCCCEECCCCEeccCC-CcceeeeecCCCeEEEEec
Confidence 344567899999999999999984 4578999999999999875
No 115
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry.; InterPro: IPR006143 This entry represents a large family of polypeptides, the MFP (for membrane fusion protein) family. MFPs are a component of the of the RND family of transporters (RND refers to resistance, nodulation, and cell division). MFPs are proposed to span the periplasm in some way linking the inner and outer membranes []. However, some members of this family are found in Gram-positive bacteria, where there is no outer membrane. MFPs are involved in the export of a variety of compounds, from drug molecules to large polypeptides, and are united by their similar overall structural organisation, combined with some conserved regions []. This family includes: Haemolysin secretion protein D (HlyD) from Escherichia coli. Lactococcin A secretion protein LcnD from Lactococcus lactis []. RTX-I toxin determinant D from Actinobacillus pleuropneumoniae. Calmodulin-sensitive adenylate cyclase-haemolysin (cyclolysin) CyaD from Bordetella pertussis. Colicin V secretion protein CvaA from E. coli []. Proteases secretion protein PrtE from Erwinia chrysanthemi []. Alkaline protease secretion protein AprE from Pseudomonas aeruginosa []. Several multidrug resistance proteins []. ; GO: 0055085 transmembrane transport, 0016020 membrane; PDB: 1T5E_E 1VF7_K 2V4D_I 4DK1_C 2F1M_B.
Probab=87.72 E-value=0.38 Score=48.37 Aligned_cols=29 Identities=31% Similarity=0.549 Sum_probs=21.1
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecc
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdK 159 (508)
..|.|.+.+|++||.|++||+|++++.-.
T Consensus 8 ~~G~V~~i~V~eG~~VkkGq~L~~LD~~~ 36 (305)
T PF00529_consen 8 VGGIVTEILVKEGQRVKKGQVLARLDPTD 36 (305)
T ss_dssp S-EEEEEE-S-TTEEE-TTSECEEE--HH
T ss_pred CCeEEEEEEccCcCEEeCCCEEEEEEeec
Confidence 46999999999999999999999999543
No 116
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=87.66 E-value=1.1 Score=54.41 Aligned_cols=61 Identities=10% Similarity=0.177 Sum_probs=47.2
Q ss_pred EEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 133 g~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
|+..+..++.++.+..++.....+. .-...|.||..|+|.++++++|+ .|+.|++|+++..
T Consensus 1047 Gq~reV~V~D~s~~~~~~~~~KAd~-~~~~~I~a~~~G~v~~~~v~~Gd-~V~~Gd~L~~iEa 1107 (1143)
T TIGR01235 1047 GQPRRIKVPDRSHKAEAAVRRKADP-GNPAHVGAPMPGVIIEVKVSSGQ-AVNKGDPLVVLEA 1107 (1143)
T ss_pred CeEEEEEecCccccccccccccccc-ccCceeecCCCcEEEEEEeCCCC-EeCCCCEEEEEEe
Confidence 3566667888877777666554432 23346999999999999999997 9999999999854
No 117
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C ....
Probab=87.38 E-value=0.61 Score=47.43 Aligned_cols=39 Identities=23% Similarity=0.318 Sum_probs=26.8
Q ss_pred EEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 153 CEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 153 ~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
+.|+. -...|.++.+|.| ++++++|+ .|+.|++|+.+..
T Consensus 15 G~v~~--~~~~v~~~~~G~v-~~~v~~G~-~V~kG~~L~~ld~ 53 (328)
T PF12700_consen 15 GTVEP--NEVSVSAPVSGRV-SVNVKEGD-KVKKGQVLAELDS 53 (328)
T ss_dssp EEEEE--SEEEE--SS-EEE-EE-S-TTS-EEETT-EEEEEE-
T ss_pred EEEEE--EEEEEECCCCEEE-EEEeCCcC-EECCCCEEEEEEC
Confidence 45554 5567999999999 99999997 9999999999854
No 118
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=87.15 E-value=1 Score=47.62 Aligned_cols=42 Identities=19% Similarity=0.316 Sum_probs=36.7
Q ss_pred EEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 153 CEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 153 ~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
..|..+.....|.++.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 35 G~v~~~~~~~~v~~~~~G~v~~i~V~eG~-~V~kG~~L~~ld~ 76 (423)
T TIGR01843 35 GKVVPSGNVKVVQHLEGGIVREILVREGD-RVKAGQVLVELDA 76 (423)
T ss_pred eEEEECCCeeecccCCCcEEEEEEeCCCC-EecCCCeEEEEcc
Confidence 45667777788999999999999999997 9999999998844
No 119
>PF13437 HlyD_3: HlyD family secretion protein
Probab=86.90 E-value=1.3 Score=37.62 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=25.2
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEe
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVET 157 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVet 157 (508)
..|.|..|.+++|+.|..|++|++|..
T Consensus 6 ~~G~V~~~~~~~G~~v~~g~~l~~i~~ 32 (105)
T PF13437_consen 6 FDGVVVSINVQPGEVVSAGQPLAEIVD 32 (105)
T ss_pred CCEEEEEEeCCCCCEECCCCEEEEEEc
Confidence 469999999999999999999999984
No 120
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=86.80 E-value=1.9 Score=44.32 Aligned_cols=41 Identities=20% Similarity=0.238 Sum_probs=21.9
Q ss_pred EEEEEccCCCeeCCCCeEEEEEe--cceeeEEecCCCeEEEEE
Q 010531 135 IARWLKKEGDKVSPGEVLCEVET--DKATVEMECMEEGYLAKI 175 (508)
Q Consensus 135 I~~W~v~~Gd~V~~gd~L~eVet--dKa~~ei~ap~~G~v~~i 175 (508)
|.+..++.||.|++||+|++|-. .....++.||.+|+|.-+
T Consensus 241 i~~~~~~~G~~V~~Gq~lg~I~dp~g~~~~~v~Ap~dGiV~~~ 283 (293)
T cd06255 241 LFEPSVPAGDTIPAGQPLGRVVDLYGAEVLEASPPRDGIVIGI 283 (293)
T ss_pred EEEEecCCCCEecCCCEEEEEECCCCCceEEEEcCCCcEEEEe
Confidence 44455666666666666666542 112334566666666543
No 121
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=86.80 E-value=1.4 Score=46.41 Aligned_cols=55 Identities=13% Similarity=0.218 Sum_probs=39.7
Q ss_pred EEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 137 RWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 137 ~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
-+.++.|+....=..-+.|+.. -.+.|.++.+|.|.++++++|+ .|+.|++|+.+
T Consensus 38 ~~~v~~~~~~~~i~~~G~v~~~-~~~~l~a~~~G~V~~v~v~~G~-~V~kG~~L~~l 92 (370)
T PRK11578 38 TLIVRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGD-KVKKDQLLGVI 92 (370)
T ss_pred EEEEEeeeeEEEEEEEEEEEee-eEEEEecccceEEEEEEcCCCC-EEcCCCEEEEE
Confidence 3444444433222344456544 3558999999999999999997 99999999988
No 122
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=86.69 E-value=0.97 Score=44.75 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=31.1
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 161 ~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
.+.|.||++|+|..+.+.+|+ .|..|++|+.+.+.
T Consensus 88 ~~~i~AP~dG~V~~~~~~~G~-~v~~g~~l~~i~~~ 122 (265)
T TIGR00999 88 YVEVRSPFDGYITQKSVTLGD-YVAPQAELFRVADL 122 (265)
T ss_pred eEEEECCCCeEEEEEEcCCCC-EeCCCCceEEEEcC
Confidence 346899999999999999997 99999999988654
No 123
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=86.63 E-value=1.4 Score=47.41 Aligned_cols=55 Identities=20% Similarity=0.163 Sum_probs=42.7
Q ss_pred EEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 138 WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 138 W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
..++.|+.-..-+....|+. .-.+.|.++.+|+|.++++++|+ .|+.||+|+.+.
T Consensus 65 ~~v~~~~~~~~i~~~Gtv~a-~~~v~v~~~vsG~V~~i~v~eG~-~VkkGq~La~ld 119 (415)
T PRK11556 65 ATATEQAVPRYLTGLGTVTA-ANTVTVRSRVDGQLMALHFQEGQ-QVKAGDLLAEID 119 (415)
T ss_pred EEEEEeccceEEEEEEEEEe-eeEEEEEccccEEEEEEECCCCC-EecCCCEEEEEC
Confidence 33444444444445677776 46688999999999999999997 999999999984
No 124
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=86.35 E-value=1.1 Score=48.25 Aligned_cols=37 Identities=16% Similarity=0.268 Sum_probs=32.1
Q ss_pred cceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 158 DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 158 dKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
..-...|.++.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 55 ~~~~~~v~a~~~G~V~~i~V~eG~-~V~kGq~L~~l~~ 91 (421)
T TIGR03794 55 SSGVDTIQSPGSGVVIDLDVEVGD-QVKKGQVVARLFQ 91 (421)
T ss_pred CCceeEEECCCCeEEEEEECCCcC-EECCCCEEEEECc
Confidence 333458999999999999999997 9999999999854
No 125
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=86.26 E-value=1.7 Score=46.10 Aligned_cols=54 Identities=13% Similarity=0.064 Sum_probs=43.5
Q ss_pred EccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 139 LKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 139 ~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
.++.|+....-+....|+... .++|.++.+|+|.++.+++|+ .|+.|++|+.+.
T Consensus 40 ~v~~~~~~~~~~~~G~v~~~~-~~~l~~~v~G~V~~i~v~~G~-~VkkGqvLa~ld 93 (385)
T PRK09859 40 TLSPGSVNVLSELPGRTVPYE-VAEIRPQVGGIIIKRNFIEGD-KVNQGDSLYQID 93 (385)
T ss_pred EeEEEeccceEEEEEEEEEEE-EEEEeccCcEEEEEEEcCCcC-EecCCCEEEEEC
Confidence 345555555555667887654 678999999999999999997 999999999984
No 126
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=86.22 E-value=1.2 Score=48.43 Aligned_cols=41 Identities=10% Similarity=0.199 Sum_probs=34.0
Q ss_pred EEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 154 EVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 154 eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
.|..+.-...|.++..|+|.+|++++|+ .|+.|++|+.+.+
T Consensus 52 ~v~p~~~~~~vq~~~~G~v~~i~V~eG~-~V~~G~~L~~ld~ 92 (457)
T TIGR01000 52 TIEPAKILSKIQSTSNNAIKENYLKENK-FVKKGDLLVVYDN 92 (457)
T ss_pred EEEecCceEEEEcCCCcEEEEEEcCCCC-EecCCCEEEEECc
Confidence 3444444567899999999999999997 9999999999843
No 127
>PRK03598 putative efflux pump membrane fusion protein; Provisional
Probab=86.07 E-value=1 Score=46.67 Aligned_cols=33 Identities=27% Similarity=0.410 Sum_probs=30.9
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 161 ~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
.+.|.++.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 43 ~i~v~a~~~G~V~~i~v~~Gd-~V~kG~~L~~ld 75 (331)
T PRK03598 43 TVNLGFRVGGRLASLAVDEGD-AVKAGQVLGELD 75 (331)
T ss_pred EEEeecccCcEEEEEEcCCCC-EEcCCCEEEEEC
Confidence 668999999999999999997 999999999984
No 128
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional
Probab=85.86 E-value=0.97 Score=46.78 Aligned_cols=33 Identities=18% Similarity=0.247 Sum_probs=30.3
Q ss_pred eEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 162 ~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
+.|.++.+|.|.++++++|+ .|+.|++|+.+..
T Consensus 48 v~i~~~v~G~V~~v~V~~Gd-~VkkGqvLa~Ld~ 80 (310)
T PRK10559 48 VAIAPDVSGLITQVNVHDNQ-LVKKGQVLFTIDQ 80 (310)
T ss_pred EEEccCCceEEEEEEeCCcC-EEcCCCEEEEECc
Confidence 56999999999999999997 9999999999843
No 129
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=85.80 E-value=0.81 Score=37.77 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=22.0
Q ss_pred CCeEEEEEEEccCCCeeCCCCeEEEEEecc
Q 010531 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (508)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~gd~L~eVetdK 159 (508)
+.-+.=+.++++.||.|++||+||+|=++.
T Consensus 28 ID~~vGi~l~~k~Gd~V~~Gd~l~~i~~~~ 57 (75)
T PF07831_consen 28 IDPAVGIELHKKVGDRVEKGDPLATIYAND 57 (75)
T ss_dssp --TT-EEEESS-TTSEEBTTSEEEEEEESS
T ss_pred cCcCcCeEecCcCcCEECCCCeEEEEEcCC
Confidence 445556789999999999999999987653
No 130
>KOG3373 consensus Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism]
Probab=85.80 E-value=0.55 Score=44.23 Aligned_cols=39 Identities=28% Similarity=0.309 Sum_probs=35.8
Q ss_pred cCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecC
Q 010531 141 KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 179 (508)
Q Consensus 141 ~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~e 179 (508)
++|-.|.+||.++-||+-|+.-+|.+|.+|.|.+|..+-
T Consensus 89 e~Gt~vskgds~gavESVKaaSeIysp~sGeVtEiNe~l 127 (172)
T KOG3373|consen 89 EVGTEVSKGDSFGAVESVKAASEIYSPVSGEVTEINEKL 127 (172)
T ss_pred CCCCccccCcceeeeeehhhhhhhhCcCCceEEEecccc
Confidence 689999999999999999999999999999999986443
No 131
>PRK15136 multidrug efflux system protein EmrA; Provisional
Probab=85.55 E-value=0.99 Score=48.23 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=31.1
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 161 ~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
.+.|.++.+|+|.++.+++|+ .|+.|++|+.+.
T Consensus 61 ~v~v~a~v~G~V~~v~V~~Gd-~VkkGqvL~~LD 93 (390)
T PRK15136 61 QVQIMSQVSGSVTKVWADNTD-FVKEGDVLVTLD 93 (390)
T ss_pred EEEEeccCCeEEEEEEcCCCC-EECCCCEEEEEC
Confidence 788999999999999999997 999999999984
No 132
>COG4656 RnfC Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Energy production and conversion]
Probab=85.46 E-value=0.89 Score=50.10 Aligned_cols=53 Identities=26% Similarity=0.286 Sum_probs=41.5
Q ss_pred eEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEE
Q 010531 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (508)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~ 176 (508)
.++.+| |.....+ =...+|++||+|.+||+|.+=+- ....+.||.+|+|.+|.
T Consensus 31 ~~~~iP-l~qh~g~--~~~~~Vkvgd~V~~GQ~l~~~~g--~~~~vHaP~sG~V~~I~ 83 (529)
T COG4656 31 QRALIP-LKQHIGA--PGILLVKVGDKVLKGQPLTRGEG--IMLPVHAPTSGTVTAIE 83 (529)
T ss_pred cceEEe-eecccCC--ccceEEeeCCEEeeCceeeccCC--ceeeeeCCCCceeeeee
Confidence 456666 3322222 25678999999999999998884 88999999999999997
No 133
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein. The gene name is accB or fabE.
Probab=85.46 E-value=0.79 Score=43.01 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=24.9
Q ss_pred CCeEEEEEEEccCCCeeCCCCeEEEEE
Q 010531 130 MQEGNIARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~gd~L~eVe 156 (508)
-..|+|.+|+++.||.|+.||+|++|+
T Consensus 130 ~~~G~v~~i~v~~g~~V~~Gq~L~~i~ 156 (156)
T TIGR00531 130 EVAGKVVEILVENGQPVEYGQPLIVIE 156 (156)
T ss_pred CCCcEEEEEEeCCCCEECCCCEEEEEC
Confidence 457999999999999999999999985
No 134
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated
Probab=85.04 E-value=0.91 Score=42.53 Aligned_cols=27 Identities=26% Similarity=0.384 Sum_probs=24.8
Q ss_pred CCeEEEEEEEccCCCeeCCCCeEEEEE
Q 010531 130 MQEGNIARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~gd~L~eVe 156 (508)
-.+|+|.+|+++.||.|..||+|++|+
T Consensus 129 ~~~G~i~~i~v~~g~~V~~Gq~L~~i~ 155 (155)
T PRK06302 129 DKSGVVTEILVENGQPVEFGQPLFVIE 155 (155)
T ss_pred CCCeEEEEEEcCCCCEeCCCCEEEEeC
Confidence 357999999999999999999999985
No 135
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=84.28 E-value=2.2 Score=45.29 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=42.2
Q ss_pred EccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 139 LKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 139 ~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
.++.++.-..-..-..|+.+ -.++|.++.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 42 ~v~~~~~~~~i~~~G~v~~~-~~~~l~~~v~G~V~~v~v~~Gd-~VkkGq~La~ld 95 (385)
T PRK09578 42 TVRPTSVPMTVELPGRLDAY-RQAEVRARVAGIVTARTYEEGQ-EVKQGAVLFRID 95 (385)
T ss_pred EEEEecccceEEEEEEEEEe-eEEEEeccCcEEEEEEECCCCC-EEcCCCEEEEEC
Confidence 44455544444555677765 4679999999999999999997 999999999983
No 136
>PF04952 AstE_AspA: Succinylglutamate desuccinylase / Aspartoacylase family; InterPro: IPR007036 This family describes both succinylglutamate desuccinylase that catalyses the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway and also includes aspartoacylase 3.5.1.15 from EC which cleaves acylaspartate into a fatty acid and aspartate. Mutations in P45381 from SWISSPROT lead to Canavan disease [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0008152 metabolic process; PDB: 3CDX_A 3FMC_A 3NA6_A 2BCO_B 3B2Y_A 3LWU_A 3IEH_A 2QVP_B 2G9D_A 1YW4_A ....
Probab=83.78 E-value=2.8 Score=42.49 Aligned_cols=59 Identities=20% Similarity=0.326 Sum_probs=46.1
Q ss_pred EEEEEEEccCCCeeCCCCeE--EEEEe--cceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 133 GNIARWLKKEGDKVSPGEVL--CEVET--DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 133 g~I~~W~v~~Gd~V~~gd~L--~eVet--dKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
+=+..+.++.||.|++||+| .++-. +-...+|.||.+|+|.- ..+.- .|..|+.|+.+.
T Consensus 228 ~G~~~~~~~~g~~v~~G~~l~~~~~~~~~~~~~~~v~a~~~g~ii~--~~~~~-~v~~G~~l~~v~ 290 (292)
T PF04952_consen 228 GGLFEPEVKLGDDVEKGDLLGRGEIFDPFGGEVIEVRAPQDGIIIF--IRESP-YVEQGDALAKVA 290 (292)
T ss_dssp SEEEEETSSTTTTETTTCEEETEEEEEETTSTEEEEESSSSEEEES--ECTSS-ECTTTEEEEEEE
T ss_pred cEEEEEeecCCCceECCcccCCeeeecCCCCceEEEEeCCCEEEEE--eCccc-ccCCCCeEEEEe
Confidence 44568999999999999999 54432 23456899999999964 45665 899999998764
No 137
>PLN02226 2-oxoglutarate dehydrogenase E2 component
Probab=82.79 E-value=1.3 Score=48.56 Aligned_cols=30 Identities=33% Similarity=0.571 Sum_probs=27.0
Q ss_pred CCCeEEEEEEEccCCCeeCCCCeEEEEEec
Q 010531 129 TMQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (508)
Q Consensus 129 ~~~eg~I~~W~v~~Gd~V~~gd~L~eVetd 158 (508)
...+|+|.+|++++||.|..|++|+.|+.+
T Consensus 139 Ap~~G~v~~ilv~eGd~V~vG~~L~~I~~~ 168 (463)
T PLN02226 139 SPASGVIQEFLVKEGDTVEPGTKVAIISKS 168 (463)
T ss_pred cCCCeEEEEEEeCCCCEecCCCEEEEeccC
Confidence 346799999999999999999999999854
No 138
>COG1726 NqrA Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrA [Energy production and conversion]
Probab=82.74 E-value=1.4 Score=46.55 Aligned_cols=39 Identities=36% Similarity=0.503 Sum_probs=32.3
Q ss_pred EEEccCCCeeCCCCeEEEEEeccee--eEEecCCCeEEEEEEec
Q 010531 137 RWLKKEGDKVSPGEVLCEVETDKAT--VEMECMEEGYLAKIVKG 178 (508)
Q Consensus 137 ~W~v~~Gd~V~~gd~L~eVetdKa~--~ei~ap~~G~v~~i~~~ 178 (508)
...|++||.|++|++|+| ||-. +-++||.+|+|..|...
T Consensus 42 ~mkV~~gD~VkkGq~LfE---dKknpgv~~Tap~sG~V~aI~RG 82 (447)
T COG1726 42 SMKVREGDAVKKGQVLFE---DKKNPGVVFTAPVSGKVTAIHRG 82 (447)
T ss_pred cceeccCCeeeccceeee---cccCCCeEEeccCCceEEEeecc
Confidence 457899999999999997 5543 55999999999998643
No 139
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=81.62 E-value=1.5 Score=44.63 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=23.6
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEE
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVe 156 (508)
+|+|.+|++++||.|..||+|++||
T Consensus 249 sGtV~eIlVkeGD~V~vGqpL~~IE 273 (274)
T PLN02983 249 SGTIVEILAEDGKPVSVDTPLFVIE 273 (274)
T ss_pred CeEEEEEecCCCCEeCCCCEEEEec
Confidence 6899999999999999999999986
No 140
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=81.02 E-value=1.2 Score=37.45 Aligned_cols=23 Identities=48% Similarity=0.993 Sum_probs=18.7
Q ss_pred EEEEEccCCCeeCCCCeEEEEEe
Q 010531 135 IARWLKKEGDKVSPGEVLCEVET 157 (508)
Q Consensus 135 I~~W~v~~Gd~V~~gd~L~eVet 157 (508)
=++|++++||.|++||+|++++-
T Consensus 46 ~v~~~~~dG~~v~~g~~i~~i~G 68 (88)
T PF02749_consen 46 EVEWLVKDGDRVEPGDVILEIEG 68 (88)
T ss_dssp EEEESS-TT-EEETTCEEEEEEE
T ss_pred EEEEEeCCCCCccCCcEEEEEEe
Confidence 35799999999999999999984
No 141
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=80.59 E-value=2.3 Score=45.39 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=35.5
Q ss_pred eEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 151 VLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 151 ~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
....|+. .-.++|.++.+|+|.++.+++|+ .|+.|++|+.+.
T Consensus 56 ~~G~v~a-~~~~~l~a~vsG~V~~v~v~~Gd-~VkkGqvLa~ld 97 (397)
T PRK15030 56 LPGRTSA-YRIAEVRPQVSGIILKRNFKEGS-DIEAGVSLYQID 97 (397)
T ss_pred EEEEEEE-EEEEEEEecCcEEEEEEEcCCCC-EecCCCEEEEEC
Confidence 3346664 44778999999999999999997 999999999984
No 142
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional
Probab=80.48 E-value=2.3 Score=45.80 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=36.4
Q ss_pred CeEEEEEecc-eeeEEecCCCeEEEEEE-ecCCCeeeecCCEEEEEe
Q 010531 150 EVLCEVETDK-ATVEMECMEEGYLAKIV-KGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 150 d~L~eVetdK-a~~ei~ap~~G~v~~i~-~~eG~~~v~vG~~la~i~ 194 (508)
+..+.|+.|. -...|.++.+|+|.+++ +.+|+ .|+.||+|+.+.
T Consensus 111 ~~~G~v~~~~~~~~~v~arv~G~V~~l~~~~~Gd-~VkkGq~La~l~ 156 (409)
T PRK09783 111 TFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGD-KVQKGTPLLDLT 156 (409)
T ss_pred EEeEEEEECCCceEEEeCCcCEEEEEEEecCCCC-EECCCCEEEEEe
Confidence 4456666543 45689999999999998 89997 999999999985
No 143
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=80.31 E-value=3.8 Score=37.70 Aligned_cols=45 Identities=24% Similarity=0.347 Sum_probs=40.7
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecceeeE-EecCCCeEEEEE
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVE-MECMEEGYLAKI 175 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~e-i~ap~~G~v~~i 175 (508)
.||-++--.+..|+.|.+||+++-|.|-|..+. +++|.+|+|.=+
T Consensus 98 vEGYvVtpIaDvG~RvrkGd~~AAvttRkG~vryv~~P~~g~Vvyi 143 (161)
T COG4072 98 VEGYVVTPIADVGNRVRKGDPFAAVTTRKGEVRYVKPPVPGTVVYI 143 (161)
T ss_pred cCcEEEEEeecccchhcCCCceeEEEecccceEEecCCCCcEEEEE
Confidence 578888999999999999999999999999988 899999998754
No 144
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=79.79 E-value=2.6 Score=47.78 Aligned_cols=33 Identities=18% Similarity=0.344 Sum_probs=30.2
Q ss_pred EEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 163 EMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 163 ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
+|.||..|+|.++++++|| .|+.|++|+++...
T Consensus 527 ~v~apm~G~V~~~~V~~Gd-~V~~Gq~L~~iEam 559 (596)
T PRK14042 527 DITVAIPGSIIAIHVSAGD-EVKAGQAVLVIEAM 559 (596)
T ss_pred eEecCcceEEEEEEeCCCC-EeCCCCEEEEEEec
Confidence 6999999999999999997 99999999998543
No 145
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=78.19 E-value=6.2 Score=39.70 Aligned_cols=46 Identities=24% Similarity=0.307 Sum_probs=36.3
Q ss_pred CCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 148 PGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 148 ~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
.-.....++. .-..++.++..|.|.++++++|+ .|+.|++|+.+.+
T Consensus 54 ~~~~~G~~~~-~~~~~v~~~~~G~v~~i~v~~G~-~Vk~Gq~L~~ld~ 99 (372)
T COG0845 54 AVRAPGRVEA-TRSVEVLARVAGIVAEILVKEGD-RVKKGQLLARLDP 99 (372)
T ss_pred ceeeeeEEEe-eeeeeEecccccEEEEEEccCCC-eecCCCEEEEECC
Confidence 3344455555 44447889999999999999997 9999999999854
No 146
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=77.14 E-value=2.6 Score=44.67 Aligned_cols=34 Identities=15% Similarity=0.282 Sum_probs=30.8
Q ss_pred EEecCCCeEEEEEEecCCCeeeecCCEEEEEeccC
Q 010531 163 EMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (508)
Q Consensus 163 ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~ 197 (508)
.|.||.+|+|.+..+..|+ .|.+|++|+.+++.+
T Consensus 210 ~IrAP~dG~V~~~~v~~G~-~V~~G~~l~alVp~~ 243 (352)
T COG1566 210 VIRAPVDGYVTNLSVRVGQ-YVSAGTPLMALVPLD 243 (352)
T ss_pred EEECCCCceEEeecccCCC-eecCCCceEEEeccc
Confidence 3999999999999999997 999999999887643
No 147
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=77.05 E-value=3.4 Score=46.70 Aligned_cols=34 Identities=21% Similarity=0.310 Sum_probs=30.8
Q ss_pred eEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 162 ~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
-.|.||..|.|.++++++|| .|+.|++|+++...
T Consensus 518 ~~v~ap~~G~v~~~~V~~Gd-~V~~G~~l~~iEam 551 (582)
T TIGR01108 518 TPVTAPIAGSIVKVKVSEGQ-TVAEGEVLLILEAM 551 (582)
T ss_pred CeEeCCccEEEEEEEeCCCC-EECCCCEEEEEEec
Confidence 46999999999999999997 99999999998543
No 148
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=76.53 E-value=3.3 Score=44.52 Aligned_cols=33 Identities=12% Similarity=0.146 Sum_probs=30.0
Q ss_pred eEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 162 ~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
..|.||++|+|..+.+.+|+ .|..|++|+.+..
T Consensus 254 ~~i~AP~dG~V~~~~~~~G~-~v~~g~~l~~i~~ 286 (421)
T TIGR03794 254 TRIVSQHSGRVIELNYTPGQ-LVAAGAPLASLEV 286 (421)
T ss_pred CeEEcCCCeEEEEeeCCCCC-EecCCCcEEEEEc
Confidence 56999999999999999997 9999999998843
No 149
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=76.38 E-value=6.6 Score=37.49 Aligned_cols=18 Identities=28% Similarity=0.462 Sum_probs=15.9
Q ss_pred EEecCCCeeeecCCEEEEE
Q 010531 175 IVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 175 i~~~eG~~~v~vG~~la~i 193 (508)
.++++|+ .|+.||+|+.+
T Consensus 106 ~~Vk~Gd-~Vk~G~~L~~~ 123 (169)
T PRK09439 106 RIAEEGQ-RVKVGDPIIEF 123 (169)
T ss_pred EEecCCC-EEeCCCEEEEE
Confidence 3789997 89999999987
No 150
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=75.95 E-value=2.5 Score=46.04 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=26.7
Q ss_pred CCeEEEEEEEccCCCeeCCCCeEEEEEecce
Q 010531 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (508)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa 160 (508)
...|.|.+.+|++||.|++||+|+.++..-.
T Consensus 65 ~~~G~v~~i~V~eG~~V~~G~~L~~ld~~~~ 95 (457)
T TIGR01000 65 TSNNAIKENYLKENKFVKKGDLLVVYDNGNE 95 (457)
T ss_pred CCCcEEEEEEcCCCCEecCCCEEEEECchHH
Confidence 3459999999999999999999999976433
No 151
>PRK05305 phosphatidylserine decarboxylase; Provisional
Probab=75.07 E-value=6.5 Score=38.45 Aligned_cols=54 Identities=24% Similarity=0.311 Sum_probs=41.9
Q ss_pred EEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCE-EEE
Q 010531 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEV-IAI 192 (508)
Q Consensus 133 g~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~-la~ 192 (508)
+.|..| +++|+.|++||.+.-++-- .++++--|.+ .++.+++|+ .|..|+. |++
T Consensus 150 r~I~~~-~~~g~~v~kGe~~G~f~fG-StV~l~~p~~---~~~~V~~G~-kV~~Getvi~~ 204 (206)
T PRK05305 150 RRIVCY-VKEGDEVERGERFGLIRFG-SRVDVYLPLG---TEPLVSVGQ-KVVAGETVLAR 204 (206)
T ss_pred cEEEEe-CCCCCEEccCcEEeEEecC-CeEEEEEcCC---CcccccCCC-EEEcccEEEEE
Confidence 455554 5899999999999999976 5666666665 278899997 8999985 454
No 152
>PRK09439 PTS system glucose-specific transporter subunit; Provisional
Probab=74.51 E-value=5.4 Score=38.06 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=25.2
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEecce
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetdKa 160 (508)
+|+--+++|++||+|++||+|+++.-+..
T Consensus 100 ~G~gF~~~Vk~Gd~Vk~G~~L~~~D~~~i 128 (169)
T PRK09439 100 KGEGFKRIAEEGQRVKVGDPIIEFDLPLL 128 (169)
T ss_pred CCCceEEEecCCCEEeCCCEEEEEcHHHH
Confidence 46778999999999999999999987543
No 153
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=74.08 E-value=9.1 Score=34.70 Aligned_cols=19 Identities=16% Similarity=0.226 Sum_probs=16.2
Q ss_pred EEEecCCCeeeecCCEEEEE
Q 010531 174 KIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 174 ~i~~~eG~~~v~vG~~la~i 193 (508)
+.++++|+ .|..|++|+.+
T Consensus 83 ~~~vk~Gd-~V~~G~~l~~~ 101 (124)
T cd00210 83 TSHVEEGQ-RVKQGDKLLEF 101 (124)
T ss_pred EEEecCCC-EEcCCCEEEEE
Confidence 45789997 89999999886
No 154
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS). These domains transport CO2, acyl, or methylamine, respectively, between components of the complex/protein via a biotinyl or lipoyl group, which is covalently attached to a highly conserved lysine residue.
Probab=73.66 E-value=3.9 Score=32.52 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=23.1
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEE
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEV 155 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eV 155 (508)
.+|+|.+|+++.|+.|..|+.|+.|
T Consensus 49 ~~G~v~~~~~~~g~~v~~g~~l~~i 73 (73)
T cd06663 49 KSGTVKKVLVKEGTKVEGDTPLVKI 73 (73)
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEC
Confidence 4799999999999999999999875
No 155
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=73.17 E-value=4.1 Score=41.85 Aligned_cols=29 Identities=24% Similarity=0.492 Sum_probs=26.6
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecc
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdK 159 (508)
..|+|.+.++++||.|..|++|+.|+.+.
T Consensus 52 ~~g~~~~~~~~~g~~v~~g~~l~~i~~~~ 80 (371)
T PRK14875 52 AAGTLRRQVAQEGETLPVGALLAVVADAE 80 (371)
T ss_pred CCeEEEEEEcCCCCEeCCCCEEEEEecCC
Confidence 46999999999999999999999998754
No 156
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases. 2-oxo acid dehydrogenase multienzyme complexes, like pyruvate dehydrogenase (PDH), 2-oxoglutarate dehydrogenase (OGDH) and branched-chain 2-oxo acid dehydrogenase (BCDH), contain at least three different enzymes, 2-oxo acid dehydrogenase (E1), dihydrolipoyl acyltransferase (E2) and dihydrolipoamide dehydrogenase (E3) and play a key role in redox regulation. E2, the central component of the complex, catalyzes the transfer of the acyl group of CoA from E1 to E3 via reductive acetylation of a lipoyl group covalently attached to a lysine residue.
Probab=73.03 E-value=4.1 Score=30.77 Aligned_cols=24 Identities=38% Similarity=0.656 Sum_probs=21.9
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEE
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEV 155 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eV 155 (508)
.|++.++++++|+.|..|++|++|
T Consensus 51 ~g~v~~~~~~~g~~v~~g~~l~~~ 74 (74)
T cd06849 51 AGVLAKILVEEGDTVPVGQVIAVI 74 (74)
T ss_pred CEEEEEEeeCCcCEeCCCCEEEEC
Confidence 577999999999999999999875
No 157
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=72.78 E-value=5.1 Score=45.44 Aligned_cols=34 Identities=18% Similarity=0.304 Sum_probs=30.7
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 161 ~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
...|.||..|+|.++++++|+ .|+.|++|+.+..
T Consensus 524 ~~~V~Ap~~G~I~~~~V~~Gd-~V~~Gd~l~~iEa 557 (593)
T PRK14040 524 GEPVTAPLAGNIFKVIVTEGQ-TVAEGDVLLILEA 557 (593)
T ss_pred CceEECCccEEEEEEEeCCCC-EeCCCCEEEEEec
Confidence 447999999999999999997 9999999998743
No 158
>COG0845 AcrA Membrane-fusion protein [Cell envelope biogenesis, outer membrane]
Probab=72.32 E-value=3.3 Score=41.72 Aligned_cols=27 Identities=37% Similarity=0.642 Sum_probs=25.8
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEe
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVET 157 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVet 157 (508)
..|.|.+++|++||.|++||+|+.++.
T Consensus 73 ~~G~v~~i~v~~G~~Vk~Gq~L~~ld~ 99 (372)
T COG0845 73 VAGIVAEILVKEGDRVKKGQLLARLDP 99 (372)
T ss_pred cccEEEEEEccCCCeecCCCEEEEECC
Confidence 679999999999999999999999997
No 159
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism]
Probab=72.30 E-value=4.7 Score=45.09 Aligned_cols=34 Identities=15% Similarity=0.308 Sum_probs=30.4
Q ss_pred eEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 162 ~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
-.+.||..|+|+.+.+++|+ .|..||+|+++...
T Consensus 576 ~~l~aPMpG~v~~v~V~~G~-~V~~G~~lvvlEAM 609 (645)
T COG4770 576 GELLAPMPGTVVSVAVKEGQ-EVSAGDLLVVLEAM 609 (645)
T ss_pred CceecCCCceEEEEEecCCC-EecCCCeEEEeEeh
Confidence 34899999999999999997 99999999988543
No 160
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=72.24 E-value=6.2 Score=36.12 Aligned_cols=17 Identities=18% Similarity=0.393 Sum_probs=13.0
Q ss_pred EecCCCeeeecCCEEEEE
Q 010531 176 VKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 176 ~~~eG~~~v~vG~~la~i 193 (508)
++++|+ .|+.||+|+.+
T Consensus 89 ~v~~G~-~V~~G~~L~~~ 105 (132)
T PF00358_consen 89 LVKEGD-KVKAGQPLIEF 105 (132)
T ss_dssp SS-TTS-EE-TTEEEEEE
T ss_pred EEeCCC-EEECCCEEEEE
Confidence 778997 89999999886
No 161
>PRK05704 dihydrolipoamide succinyltransferase; Validated
Probab=72.14 E-value=4.5 Score=43.76 Aligned_cols=31 Identities=29% Similarity=0.509 Sum_probs=27.8
Q ss_pred CCCeEEEEEEEccCCCeeCCCCeEEEEEecc
Q 010531 129 TMQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (508)
Q Consensus 129 ~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdK 159 (508)
...+|+|.++++++||.|..|++|++|+++.
T Consensus 50 a~~~G~v~~i~v~~G~~V~~G~~l~~i~~~~ 80 (407)
T PRK05704 50 APAAGVLSEILAEEGDTVTVGQVLGRIDEGA 80 (407)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence 4468999999999999999999999998654
No 162
>TIGR00164 PS_decarb_rel phosphatidylserine decarboxylase precursor-related protein. It is unclear whether this protein is a form of phosphatidylserine decarboxylase or is a related enzyme. It is found in Neisseria gonorrhoeae, Mycobacterium tuberculosis, and several archaeal species, all of which lack known phosphatidylserine decarboxylase.
Probab=72.04 E-value=8.4 Score=37.15 Aligned_cols=52 Identities=27% Similarity=0.401 Sum_probs=41.2
Q ss_pred EEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEE
Q 010531 133 GNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVI 190 (508)
Q Consensus 133 g~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~l 190 (508)
..|..| +++|+.|++||.+.-++-- .++++--|.+ .++.+++|+ .|..|+.|
T Consensus 130 ~~i~~~-~~~g~~v~kGeeiG~f~fG-Stv~ll~p~~---~~~~v~~G~-~V~~G~tl 181 (189)
T TIGR00164 130 RRIVCY-VKEGEKVSRGQRIGMIRFG-SRVDLYLPEN---AQAQVKVGE-KVTAGETV 181 (189)
T ss_pred cEEEEe-cCCCCEEecCcEEEEEecC-CeEEEEEcCC---CccccCCCC-EEEeceEE
Confidence 455444 4899999999999999966 6666666765 267899997 89999976
No 163
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component). dihydrolipoamide acetyltransferase. The seed for this model includes mitochondrial and Gram-negative bacterial forms. Mycobacterial candidates are highly derived, differ in having and extra copy of the lipoyl-binding domain at the N-terminus. They score below the trusted cutoff, but above the noise cutoff and above all examples of dihydrolipoamide acetyltransferase.
Probab=71.71 E-value=4.6 Score=43.59 Aligned_cols=30 Identities=37% Similarity=0.545 Sum_probs=27.3
Q ss_pred CCCeEEEEEEEccCCCeeCCCCeEEEEEec
Q 010531 129 TMQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (508)
Q Consensus 129 ~~~eg~I~~W~v~~Gd~V~~gd~L~eVetd 158 (508)
...+|+|.++++++||.|..|++|+.|+.+
T Consensus 48 a~~~G~v~~i~~~eG~~v~vG~~l~~i~~~ 77 (403)
T TIGR01347 48 SPADGVLQEILFKEGDTVESGQVLAILEEG 77 (403)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEecC
Confidence 456899999999999999999999999865
No 164
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=71.56 E-value=11 Score=34.11 Aligned_cols=19 Identities=16% Similarity=0.221 Sum_probs=16.5
Q ss_pred EEEecCCCeeeecCCEEEEE
Q 010531 174 KIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 174 ~i~~~eG~~~v~vG~~la~i 193 (508)
+.++++|+ .|+.|++|+.+
T Consensus 83 ~~~v~~Gd-~V~~G~~l~~~ 101 (121)
T TIGR00830 83 TSHVEEGQ-RVKKGDPLLEF 101 (121)
T ss_pred EEEecCCC-EEcCCCEEEEE
Confidence 45789997 89999999987
No 165
>PTZ00144 dihydrolipoamide succinyltransferase; Provisional
Probab=71.50 E-value=4.3 Score=44.07 Aligned_cols=30 Identities=33% Similarity=0.541 Sum_probs=27.0
Q ss_pred CCCeEEEEEEEccCCCeeCCCCeEEEEEec
Q 010531 129 TMQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (508)
Q Consensus 129 ~~~eg~I~~W~v~~Gd~V~~gd~L~eVetd 158 (508)
...+|+|.++++++||.|..|++|++|+++
T Consensus 92 Ap~~G~v~~i~v~~G~~V~~G~~L~~I~~~ 121 (418)
T PTZ00144 92 APASGVITKIFAEEGDTVEVGAPLSEIDTG 121 (418)
T ss_pred cCCCeEEEEEEeCCCCEecCCCEEEEEcCC
Confidence 346799999999999999999999999854
No 166
>cd00210 PTS_IIA_glc PTS_IIA, PTS system, glucose/sucrose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.
Probab=70.70 E-value=3.6 Score=37.26 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=24.3
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEecc
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETDK 159 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetdK 159 (508)
+|+--++++++||.|++||+|+++.-+.
T Consensus 78 ~g~gF~~~vk~Gd~V~~G~~l~~~D~~~ 105 (124)
T cd00210 78 NGEGFTSHVEEGQRVKQGDKLLEFDLPA 105 (124)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 4677899999999999999999998543
No 167
>PLN02528 2-oxoisovalerate dehydrogenase E2 component
Probab=69.78 E-value=5.5 Score=43.17 Aligned_cols=31 Identities=26% Similarity=0.370 Sum_probs=27.8
Q ss_pred CCCeEEEEEEEccCCCeeCCCCeEEEEEecc
Q 010531 129 TMQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (508)
Q Consensus 129 ~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdK 159 (508)
...+|.|.+|++++||.|..|++|++|+++.
T Consensus 46 a~~~G~v~~i~v~~G~~v~vG~~l~~i~~~~ 76 (416)
T PLN02528 46 SRYKGKVAQINFSPGDIVKVGETLLKIMVED 76 (416)
T ss_pred cCCCEEEEEEEeCCCCEeCCCCEEEEEeccC
Confidence 4567999999999999999999999998655
No 168
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=69.56 E-value=6.7 Score=44.49 Aligned_cols=34 Identities=15% Similarity=0.300 Sum_probs=30.7
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 161 ~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
...|.||..|+|.++.+++|+ .|+.|++|+.+..
T Consensus 522 ~~~V~Ap~~G~v~~~~V~~Gd-~V~~Gq~L~~iea 555 (592)
T PRK09282 522 PGAVTSPMPGTVVKVKVKEGD-KVKAGDTVLVLEA 555 (592)
T ss_pred CceEeCCCcEEEEEEEeCCCC-EECCCCEEEEEec
Confidence 357999999999999999997 9999999999843
No 169
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=69.45 E-value=14 Score=34.78 Aligned_cols=29 Identities=41% Similarity=0.495 Sum_probs=25.4
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEecce
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetdKa 160 (508)
+|+--+-++++||+|++||+|+++.-|..
T Consensus 85 ~GegF~~~v~~Gd~Vk~Gd~Li~fDl~~I 113 (156)
T COG2190 85 NGEGFESLVKEGDKVKAGDPLLEFDLDLI 113 (156)
T ss_pred CCcceEEEeeCCCEEccCCEEEEECHHHH
Confidence 47778899999999999999999988643
No 170
>TIGR00830 PTBA PTS system, glucose subfamily, IIA component. These are part of the The PTS Glucose-Glucoside (Glc) SuperFamily. The Glc family includes permeases specific for glucose, N-acetylglucosamine and a large variety of a- and b-glucosides. However, not all b-glucoside PTS permeases are in this class, as the cellobiose (Cel) b-glucoside PTS permease is in the Lac family (TC #4.A.3). The IIA, IIB and IIC domains of all of the permeases listed below are demonstrably homologous. These permeases show limited sequence similarity with members of the Fru family (TC #4.A.2). Several of the PTS permeases in the Glc family lack their own IIA domains and instead use the glucose IIA protein (IIAglc or Crr). Most of these permeases have the B and C domains linked together in a single polypeptide chain, and a cysteyl residue in the IIB domain is phosphorylated by direct phosphoryl transfer from IIAglc(his~P). Those permeases which lack a IIA domain include the maltose (Mal), arbutin-salicin-c
Probab=69.43 E-value=3.9 Score=36.91 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=24.1
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEecc
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETDK 159 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetdK 159 (508)
+|+--++++++||+|++||+|+++.-+.
T Consensus 78 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 105 (121)
T TIGR00830 78 NGEGFTSHVEEGQRVKKGDPLLEFDLKA 105 (121)
T ss_pred CCCceEEEecCCCEEcCCCEEEEEcHHH
Confidence 4666799999999999999999998653
No 171
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2.3.1.84 from EC) enzymes approximately 500 residues long that seem to be restricted to Saccharomyces. These catalyse the esterification of isoamyl alcohol by acetyl coenzyme A [].; GO: 0004026 alcohol O-acetyltransferase activity, 0006066 alcohol metabolic process
Probab=68.12 E-value=51 Score=35.72 Aligned_cols=38 Identities=24% Similarity=0.263 Sum_probs=28.7
Q ss_pred EeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhh
Q 010531 345 LTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRK 389 (508)
Q Consensus 345 l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~ 389 (508)
....++.+.+-++++..++ .++|+|.+|.-+++.||.+
T Consensus 252 ~~~~i~~~~~~~ll~~CR~-------~~~TlT~~L~al~~~al~~ 289 (480)
T PF07247_consen 252 RSLSISPEELKKLLKACRK-------HGTTLTALLHALIALALSK 289 (480)
T ss_pred EEEEECHHHHHHHHHHHHH-------cCCCHHHHHHHHHHHHHHh
Confidence 3456667777777766653 2589999999999999997
No 172
>PF02666 PS_Dcarbxylase: Phosphatidylserine decarboxylase; InterPro: IPR003817 Phosphatidylserine decarboxylase plays a pivotal role in the synthesis of phospholipid by the mitochondria. The substrate phosphatidylserine is synthesized extramitochondrially and must be translocated to the mitochondria prior to decarboxylation []. Phosphatidylserine decarboxylases 4.1.1.65 from EC is responsible for conversion of phosphatidylserine to phosphatidylethanolamine and plays a central role in the biosynthesis of aminophospholipids [].; GO: 0004609 phosphatidylserine decarboxylase activity, 0008654 phospholipid biosynthetic process
Probab=68.05 E-value=8.9 Score=37.18 Aligned_cols=57 Identities=28% Similarity=0.376 Sum_probs=43.6
Q ss_pred EEEEEEEc-cCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEE
Q 010531 133 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (508)
Q Consensus 133 g~I~~W~v-~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~ 192 (508)
|.|.-|.. ++|+.|++||.+.-++- -.++.+--|.+-.. ++.+++|+ .|..|+.|++
T Consensus 145 ~~I~~~~~~~~g~~v~kG~e~G~f~f-GStvvl~f~~~~~~-~~~v~~g~-~V~~Ge~i~~ 202 (202)
T PF02666_consen 145 GSIVLTVDPKEGDEVKKGEELGYFRF-GSTVVLLFPKDKIF-EWSVKPGQ-KVRAGETIGY 202 (202)
T ss_pred ceeEEEecccCCCEEecCcEeCEEec-CCeEEEEEeCCCcc-ccccCCCC-EEEeeeEEeC
Confidence 56666664 69999999999999997 55565554444333 78899997 8999999874
No 173
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=68.01 E-value=6.8 Score=41.62 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=29.9
Q ss_pred eEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 162 ~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
+.|.+.++|+|.++.+.+++ .|+.|++|+.|.+
T Consensus 54 v~Iap~VsG~V~eV~V~dnq-~Vk~Gd~L~~iD~ 86 (352)
T COG1566 54 VPIAPQVSGRVTEVNVKDNQ-LVKKGDVLFRIDP 86 (352)
T ss_pred EEEcCcCceEEEEEEecCCC-EecCCCeEEEECc
Confidence 45899999999999999997 9999999999843
No 174
>TIGR02712 urea_carbox urea carboxylase. Members of this family are ATP-dependent urea carboxylase, including characterized members from Oleomonas sagaranensis (alpha class Proteobacterium) and yeasts such as Saccharomyces cerevisiae. The allophanate hydrolase domain of the yeast enzyme is not included in this model and is represented by an adjacent gene in Oleomonas sagaranensis. The fusion of urea carboxylase and allophanate hydrolase is designated urea amidolyase. The enzyme from Oleomonas sagaranensis was shown to be highly active on acetamide and formamide as well as urea.
Probab=66.55 E-value=7.4 Score=47.76 Aligned_cols=34 Identities=18% Similarity=0.290 Sum_probs=30.5
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 161 ~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
...|.||..|.|.++++++|| .|+.|++|+++..
T Consensus 1132 ~~~v~a~~~G~v~~~~v~~Gd-~V~~Gd~l~~iEs 1165 (1201)
T TIGR02712 1132 AEQVESEYAGNFWKVLVEVGD-RVEAGQPLVILEA 1165 (1201)
T ss_pred CcEEeCCceEEEEEEEeCCCC-EECCCCEEEEEEe
Confidence 345999999999999999997 9999999998743
No 175
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion]
Probab=66.41 E-value=6.9 Score=42.28 Aligned_cols=33 Identities=33% Similarity=0.550 Sum_probs=28.7
Q ss_pred CCCeEEEEEEEccCCCeeCCCCeEEEEEeccee
Q 010531 129 TMQEGNIARWLKKEGDKVSPGEVLCEVETDKAT 161 (508)
Q Consensus 129 ~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~ 161 (508)
...+|+|.+.++++||.|..|++|+.|++.-..
T Consensus 50 ap~~G~l~~i~~~~G~~V~Vg~~I~~i~~~~~~ 82 (404)
T COG0508 50 APDAGVLAKILVEEGDTVPVGAVIARIEEEGAD 82 (404)
T ss_pred CCCCeEEEEEeccCCCEEcCCCeEEEEecCCCc
Confidence 346799999999999999999999999986443
No 176
>COG2190 NagE Phosphotransferase system IIA components [Carbohydrate transport and metabolism]
Probab=66.00 E-value=13 Score=35.03 Aligned_cols=23 Identities=17% Similarity=0.251 Sum_probs=18.4
Q ss_pred eEEEEEEecCCCeeeecCCEEEEE
Q 010531 170 GYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 170 G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
|.--+.++++|| .|++||+|..+
T Consensus 86 GegF~~~v~~Gd-~Vk~Gd~Li~f 108 (156)
T COG2190 86 GEGFESLVKEGD-KVKAGDPLLEF 108 (156)
T ss_pred CcceEEEeeCCC-EEccCCEEEEE
Confidence 444455899997 89999999886
No 177
>PF00358 PTS_EIIA_1: phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1; InterPro: IPR001127 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. ; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3OUR_D 1GPR_A 1F3G_A 2F3G_B 1F3Z_A 1O2F_A 1GLB_F 1GGR_A 1GLA_F 1GLE_F ....
Probab=65.36 E-value=2.7 Score=38.50 Aligned_cols=28 Identities=43% Similarity=0.552 Sum_probs=21.6
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEecc
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETDK 159 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetdK 159 (508)
+|+--+|++++||+|++||+|+++.-++
T Consensus 82 ~G~gF~~~v~~G~~V~~G~~L~~~D~~~ 109 (132)
T PF00358_consen 82 NGEGFETLVKEGDKVKAGQPLIEFDLEK 109 (132)
T ss_dssp TTTTEEESS-TTSEE-TTEEEEEE-HHH
T ss_pred CCcceEEEEeCCCEEECCCEEEEEcHHH
Confidence 4666899999999999999999998654
No 178
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=63.77 E-value=8.6 Score=43.79 Aligned_cols=29 Identities=34% Similarity=0.468 Sum_probs=25.2
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEecce
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetdKa 160 (508)
+|+--+.++++||+|++||+|+++.-++.
T Consensus 542 ~g~gF~~~v~~g~~V~~G~~l~~~d~~~i 570 (610)
T TIGR01995 542 NGEGFEILVKVGDHVKAGQLLLTFDLDKI 570 (610)
T ss_pred CCCCeEEEecCcCEEcCCCEEEEecHHHH
Confidence 56778999999999999999999987643
No 179
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=61.21 E-value=14 Score=41.04 Aligned_cols=43 Identities=21% Similarity=0.381 Sum_probs=36.3
Q ss_pred EEEEecceeeEEecCCCeEEEEE------------------------EecCCCeeeecCCEEEEEecc
Q 010531 153 CEVETDKATVEMECMEEGYLAKI------------------------VKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 153 ~eVetdKa~~ei~ap~~G~v~~i------------------------~~~eG~~~v~vG~~la~i~~~ 196 (508)
..+..-+-+.+|.||.+|+|..| +++.|| .|..|++|+++..+
T Consensus 405 ~~~~~~~~~~~v~A~~~G~v~~id~~~i~~~a~~~GAp~d~~aGi~l~~k~Gd-~V~~Gd~l~~i~a~ 471 (493)
T TIGR02645 405 DDIEAGIYTADIHAETDGYVTEIDNKHITRIARLAGAPNDKGAGVELHVKVGD-QVKKGDPLYTIYAE 471 (493)
T ss_pred cccCCCCeEEEEEcCCCeEEEEeehHHHHHHHHHcCCCcCcCcCeEEeccCCC-EecCCCeEEEEECC
Confidence 33455688899999999999988 789997 89999999998743
No 180
>PRK12999 pyruvate carboxylase; Reviewed
Probab=61.01 E-value=11 Score=46.21 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=30.3
Q ss_pred eEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 162 ~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
..|.||..|+|.++++++|+ .|+.||+|+.+..
T Consensus 1077 ~~v~apm~G~v~~i~v~~Gd-~V~~G~~L~~lea 1109 (1146)
T PRK12999 1077 GHVGAPMPGSVVTVLVKEGD-EVKAGDPLAVIEA 1109 (1146)
T ss_pred ceEeCCceEEEEEEEcCCCC-EECCCCEEEEEEc
Confidence 56999999999999999997 9999999998854
No 181
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form. This model represents one of several closely related clades of the dihydrolipoamide acetyltransferase subunit of the pyruvate dehydrogenase complex. It includes sequences from mitochondria and from alpha and beta branches of the proteobacteria, as well as from some other bacteria. Sequences from Gram-positive bacteria are not included. The non-enzymatic homolog protein X, which serves as an E3 component binding protein, falls within the clade phylogenetically but is rejected by its low score.
Probab=60.53 E-value=11 Score=41.24 Aligned_cols=30 Identities=30% Similarity=0.470 Sum_probs=26.9
Q ss_pred CCeEEEEEEEccCCCe-eCCCCeEEEEEecc
Q 010531 130 MQEGNIARWLKKEGDK-VSPGEVLCEVETDK 159 (508)
Q Consensus 130 ~~eg~I~~W~v~~Gd~-V~~gd~L~eVetdK 159 (508)
..+|+|.+|++++||. |..|++|++|+.+.
T Consensus 48 ~~~G~l~~i~v~~g~~~v~vG~~l~~i~~~~ 78 (435)
T TIGR01349 48 VEEGYLAKILVPEGTKDVPVNKPIAVLVEEK 78 (435)
T ss_pred CCCEEEEEEEECCCCEEecCCCEEEEEeccC
Confidence 4569999999999999 99999999998654
No 182
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=57.96 E-value=18 Score=41.39 Aligned_cols=28 Identities=29% Similarity=0.452 Sum_probs=24.4
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEecc
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETDK 159 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetdK 159 (508)
+|+--++++++||+|++||+|+++.-++
T Consensus 558 ~G~gF~~~v~~Gd~V~~G~~l~~~D~~~ 585 (627)
T PRK09824 558 DGKFFTAHVNVGDKVNTGDLLIEFDIPA 585 (627)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHH
Confidence 4666799999999999999999998753
No 183
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=56.32 E-value=21 Score=40.36 Aligned_cols=54 Identities=15% Similarity=0.192 Sum_probs=41.2
Q ss_pred EccCCCeeCCCCeEEEEE-ecceeeE--EecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 139 LKKEGDKVSPGEVLCEVE-TDKATVE--MECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 139 ~v~~Gd~V~~gd~L~eVe-tdKa~~e--i~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
.+++||.|..||++.+|. |.-..-- ++.-..|+|..| +.+|+ ..+.++|+.+..
T Consensus 123 ~~k~gd~v~~G~i~g~v~e~~~~~h~imvpp~~~g~v~~i-~~~g~--ytv~~~i~~~~~ 179 (591)
T TIGR01042 123 KLRVGDHITGGDIYGTVFENSLIKHKIMLPPRARGTITYI-APAGN--YTVDDTVLEVEF 179 (591)
T ss_pred ccccCCCccCCCeEEEEecCCceeeeeecCCCCceEEEEE-ccCCC--ceeeeEEEEEee
Confidence 588899999999999765 3333333 455568999876 57885 899999998854
No 184
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=55.01 E-value=14 Score=40.74 Aligned_cols=30 Identities=20% Similarity=0.357 Sum_probs=26.4
Q ss_pred CCCeEEEEEEEccCCC-eeCCCCeEEEEEec
Q 010531 129 TMQEGNIARWLKKEGD-KVSPGEVLCEVETD 158 (508)
Q Consensus 129 ~~~eg~I~~W~v~~Gd-~V~~gd~L~eVetd 158 (508)
...+|+|.+|++++|+ .|+.|++|++++.+
T Consensus 50 A~~~G~v~~i~v~~G~~~V~vG~~i~~i~~~ 80 (464)
T PRK11892 50 AVDEGTLGKILVPEGTEGVKVNTPIAVLLEE 80 (464)
T ss_pred CCCceEEEEEEecCCCcEeCCCCEEEEEccC
Confidence 4568999999999995 79999999999854
No 185
>COG1155 NtpA Archaeal/vacuolar-type H+-ATPase subunit A [Energy production and conversion]
Probab=54.51 E-value=28 Score=38.89 Aligned_cols=57 Identities=30% Similarity=0.300 Sum_probs=42.1
Q ss_pred ccCCCeeCCCCeEEEEE-ecce-eeEEecCCCeEEEEEEecCCCeeeecCCEEEEEeccCC
Q 010531 140 KKEGDKVSPGEVLCEVE-TDKA-TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (508)
Q Consensus 140 v~~Gd~V~~gd~L~eVe-tdKa-~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~~ 198 (508)
+++||.|..||+|..|. |.-. -+=++.+..|.+..+.+.+|+ ..|-++|+.+..+..
T Consensus 122 ~~~Gd~V~~GdvlGtV~Et~~i~~imvpp~~~~~~v~~i~~~G~--ytv~d~ia~v~~~~g 180 (588)
T COG1155 122 VKKGDTVYPGDVLGTVQETSLITHRIMVPPGVSGKVTWIAEEGE--YTVEDVIATVSTEGG 180 (588)
T ss_pred cccCCEeccCceEEEeccCCceEEEEeCCCCCceEEEEEecCCC--ceeeEEEEEEecCCC
Confidence 47999999999999775 3312 122566667777778888995 999999999854444
No 186
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=54.40 E-value=12 Score=38.51 Aligned_cols=23 Identities=52% Similarity=1.017 Sum_probs=19.5
Q ss_pred EEEEEEccCCCeeCCCCeEEEEE
Q 010531 134 NIARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 134 ~I~~W~v~~Gd~V~~gd~L~eVe 156 (508)
.-..|++++||.|+.||+|++++
T Consensus 64 i~~~~~~~DG~~v~~g~~i~~~~ 86 (280)
T COG0157 64 IEIQWLVKDGDRVKPGDVLAEIE 86 (280)
T ss_pred eEEEEEcCCCCEeCCCCEEEEEe
Confidence 34589999999999999998887
No 187
>PRK04350 thymidine phosphorylase; Provisional
Probab=52.79 E-value=23 Score=39.29 Aligned_cols=42 Identities=19% Similarity=0.349 Sum_probs=35.9
Q ss_pred EEEecceeeEEecCCCeEEEEE------------------------EecCCCeeeecCCEEEEEecc
Q 010531 154 EVETDKATVEMECMEEGYLAKI------------------------VKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 154 eVetdKa~~ei~ap~~G~v~~i------------------------~~~eG~~~v~vG~~la~i~~~ 196 (508)
.+-.-+.+.+|.||.+|+|..| +++.|+ .|..|++|+++..+
T Consensus 398 ~~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGap~d~~aGi~l~~k~Gd-~V~~G~~l~~i~a~ 463 (490)
T PRK04350 398 DIPLGDHTHDVTAPRDGYVTAIDNRRLARIARLAGAPKDKGAGIDLHVKVGD-KVKKGDPLYTIHAE 463 (490)
T ss_pred hcCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCCC-EecCCCeEEEEecC
Confidence 3455688899999999999988 789997 99999999998743
No 188
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=52.53 E-value=36 Score=36.42 Aligned_cols=54 Identities=26% Similarity=0.280 Sum_probs=40.0
Q ss_pred EccCCCeeCCCCeEEEEE-ecceeeE--EecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 139 LKKEGDKVSPGEVLCEVE-TDKATVE--MECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 139 ~v~~Gd~V~~gd~L~eVe-tdKa~~e--i~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
.+|+||.|..||.+.+|. |.-.+-. ++.-..|.|..+ +.+|+ ..+-++++.+..
T Consensus 54 ~~k~gd~v~~gd~~g~v~e~~~~~h~imvp~~~~g~~~~~-~~~g~--~~~~~~~~~~~~ 110 (369)
T cd01134 54 LVKVGDHVTGGDILGTVPENSLIEHKIMVPPRVRGTVTYI-APAGD--YTVDDVILEVEF 110 (369)
T ss_pred ccccCCCccCCCEEEEEecCCceeeEEeCCCCCCeEEEEE-ecCCC--eeEEEEEEEEEe
Confidence 369999999999999886 3323333 455569999875 57885 888899988753
No 189
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=51.99 E-value=23 Score=39.39 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=34.9
Q ss_pred EEecceeeEEecCCCeEEEEE------------------------EecCCCeeeecCCEEEEEecc
Q 010531 155 VETDKATVEMECMEEGYLAKI------------------------VKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 155 VetdKa~~ei~ap~~G~v~~i------------------------~~~eG~~~v~vG~~la~i~~~ 196 (508)
+-.-+.+.+|.||.+|+|..| +++.|| .|..|++|+++..+
T Consensus 408 ~~~a~~~~~v~A~~~G~v~~id~~~ig~~a~~lGA~id~~aGi~l~~k~Gd-~V~~G~pl~~i~a~ 472 (500)
T TIGR03327 408 IQVGDYTYTITAPTDGYVTDIDNKAITQIAREAGAPNDKGAGVYLHVKVGE-KVKKGDPLYTIYAE 472 (500)
T ss_pred CCCCCeEEEEECCCCeEEEEeehHHHHHHHHHcCCCcCcccCeEEeccCcC-EeCCCCeEEEEECC
Confidence 445677889999999999988 788997 99999999998743
No 190
>PRK03934 phosphatidylserine decarboxylase; Provisional
Probab=51.89 E-value=22 Score=36.15 Aligned_cols=54 Identities=26% Similarity=0.278 Sum_probs=40.3
Q ss_pred EEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEE
Q 010531 134 NIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (508)
Q Consensus 134 ~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~ 192 (508)
.|..|.. +|+.|++||.+.-++-. .++.+--|.+ .+ ++.++.|+ .|..|+.|+.
T Consensus 211 ~i~~~~~-~~~~v~kGee~G~F~fG-STVvllf~~~-~~-~~~v~~g~-~V~~Ge~ig~ 264 (265)
T PRK03934 211 FIQTYEY-ENLKLKKGEELGNFEMG-STIVLFSQKG-SL-EFNLKAGK-SVKFGESIGE 264 (265)
T ss_pred ceeeecc-CCceEccccEeeEEccC-CEEEEEEeCC-cc-eEccCCCC-EEEcchhhcc
Confidence 4455554 49999999999999974 5665554543 33 57789997 8999999975
No 191
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=51.77 E-value=24 Score=29.53 Aligned_cols=56 Identities=13% Similarity=0.123 Sum_probs=32.3
Q ss_pred CCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
+.+|+|..+-... ...-...|+...-..-+-.. +..+.++.|+ .|+.|+.|+.+..
T Consensus 19 ~~~G~V~~~~~~~-----~~g~~V~i~~~~g~~~~y~~----l~~~~v~~G~-~V~~G~~IG~~g~ 74 (96)
T PF01551_consen 19 PADGKVVFVGEDP-----GYGNYVIIQHGNGYITVYGH----LDSVSVKVGD-RVKAGQVIGTVGN 74 (96)
T ss_dssp SSSEEEEEEEEET-----TTEEEEEEEETTSEEEEEEE----ESEESS-TTS-EE-TTCEEEEEBS
T ss_pred CccEEEEEEEecc-----CCccEEEEEeCCcCCEEEec----cccccceecc-cccCCCEEEecCC
Confidence 4678887766533 23444555544332222222 4445588997 9999999999853
No 192
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes with labile selenium-containing centers, different from selenocysteine-containing proteins.
Probab=51.66 E-value=19 Score=36.70 Aligned_cols=33 Identities=24% Similarity=0.379 Sum_probs=28.5
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 161 ~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
+--|.||.+|++.. .++-|+ .|+.||+|+++.+
T Consensus 164 Er~IrAp~~Gi~~~-~~~IGd-~V~KGqvLa~I~~ 196 (256)
T TIGR03309 164 ERVLRAPADGIVTP-TKAIGD-SVKKGDVIATVGD 196 (256)
T ss_pred eEEEECCCCeEEee-ccCCCC-EEeCCCEEEEEcC
Confidence 34599999999986 789997 9999999999843
No 193
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=51.56 E-value=25 Score=38.17 Aligned_cols=41 Identities=24% Similarity=0.427 Sum_probs=35.1
Q ss_pred EEecceeeEEecCCCeEEEEE-------------------------------EecCCCeeeecCCEEEEEecc
Q 010531 155 VETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 155 VetdKa~~ei~ap~~G~v~~i-------------------------------~~~eG~~~v~vG~~la~i~~~ 196 (508)
+-..+-..+|.|+.+|+|..| +.+.|+ .|..|++|+++..+
T Consensus 327 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~G~-~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 327 LPKAKYKEEVKAEKSGYISEIDAEELGLAAVDLGAGRARKEDKIDHEAGIYLHKKTGD-RVKKGDPLATLYSS 398 (405)
T ss_pred CCCCCeEEEEECCCCeEEEEechHHHHHHHHHhCCCcCCCCCCCCcCCCeEEecCCcC-EeCCCCeEEEEeCC
Confidence 446788899999999999987 778997 89999999998743
No 194
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=51.29 E-value=23 Score=36.45 Aligned_cols=35 Identities=14% Similarity=0.161 Sum_probs=30.2
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeecCCEEEEEeccC
Q 010531 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (508)
Q Consensus 161 ~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~ 197 (508)
..-|.||..|.+. ..++.|+ .|+.||+|+++.+.-
T Consensus 231 ~~~v~Ap~~Gi~~-~~~~~G~-~V~~Gq~lg~I~dp~ 265 (293)
T cd06255 231 RDWVAAIHGGLFE-PSVPAGD-TIPAGQPLGRVVDLY 265 (293)
T ss_pred eEEEecCCCeEEE-EecCCCC-EecCCCEEEEEECCC
Confidence 5679999999996 6789997 999999999997643
No 195
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=51.01 E-value=23 Score=38.69 Aligned_cols=38 Identities=21% Similarity=0.334 Sum_probs=33.2
Q ss_pred ecceeeEEecCCCeEEEEE-------------------------------EecCCCeeeecCCEEEEEec
Q 010531 157 TDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 157 tdKa~~ei~ap~~G~v~~i-------------------------------~~~eG~~~v~vG~~la~i~~ 195 (508)
.-+-+.+|.|+.+|+|..| +++.|| .|+.|++|+++..
T Consensus 335 ~a~~~~~v~A~~~G~v~~id~~~ig~~~~~lGaGr~~~~d~iD~~aGi~l~~k~Gd-~V~~Gd~l~~i~~ 403 (437)
T TIGR02643 335 TAPLIKPVYADREGYVSEMDTRALGMAVVALGGGRRKADDTIDYSVGLTDLLPLGD-RVEKGEPLAVVHA 403 (437)
T ss_pred CCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCccccCCCCCcCcccCeEeccCCcC-EeCCCCeEEEEEC
Confidence 4577889999999999988 778997 8999999999874
No 196
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed
Probab=49.11 E-value=22 Score=38.32 Aligned_cols=31 Identities=32% Similarity=0.530 Sum_probs=27.6
Q ss_pred CCeEEEEEEEccCCCeeCCCCeEEEEEecce
Q 010531 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (508)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa 160 (508)
..+|+|.++++++|+.|..|++|+.|+.+..
T Consensus 51 p~~G~i~~~~v~~G~~v~~G~~l~~i~~~~~ 81 (411)
T PRK11856 51 PVAGTVAKLLVEEGDVVPVGSVIAVIEEEGE 81 (411)
T ss_pred CCCeEEEEEecCCCCEeCCCCEEEEEecCCC
Confidence 4679999999999999999999999986553
No 197
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=48.64 E-value=21 Score=36.87 Aligned_cols=34 Identities=26% Similarity=0.328 Sum_probs=29.6
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 161 ~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
..-|.||..|.+. ..++.|+ .|+.||+|+++.+.
T Consensus 229 ~~~v~A~~~Gl~~-~~~~~G~-~V~~Gq~lg~i~dp 262 (298)
T cd06253 229 VVYVNAETSGIFV-PAKHLGD-IVKRGDVIGEIVDP 262 (298)
T ss_pred eEEEEcCCCeEEE-ECcCCCC-EECCCCEEEEEeCC
Confidence 5679999999997 5589997 99999999999864
No 198
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=48.33 E-value=15 Score=42.10 Aligned_cols=31 Identities=19% Similarity=0.350 Sum_probs=28.7
Q ss_pred EecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 164 MECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 164 i~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
|-||..|+|.+|.+++|+ -|+.|++|+++..
T Consensus 1109 igAPMpG~vieikvk~G~-kV~Kgqpl~VLSA 1139 (1176)
T KOG0369|consen 1109 IGAPMPGTVIEIKVKEGA-KVKKGQPLAVLSA 1139 (1176)
T ss_pred ccCCCCCceEEEEEecCc-eecCCCceEeeec
Confidence 889999999999999998 8999999998754
No 199
>PRK14844 bifunctional DNA-directed RNA polymerase subunit beta/beta'; Provisional
Probab=48.31 E-value=29 Score=45.52 Aligned_cols=20 Identities=25% Similarity=0.430 Sum_probs=17.9
Q ss_pred EEEccCCCeeCCCCeEEEEE
Q 010531 137 RWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 137 ~W~v~~Gd~V~~gd~L~eVe 156 (508)
..+|++|+.|++||.||+..
T Consensus 2423 ~l~v~~g~~V~~g~~la~wd 2442 (2836)
T PRK14844 2423 KLYVDEGGSVKIGDKVAEWD 2442 (2836)
T ss_pred EEEecCCCEecCCCEEEEEc
Confidence 57899999999999999864
No 200
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=48.18 E-value=28 Score=38.13 Aligned_cols=41 Identities=27% Similarity=0.465 Sum_probs=34.9
Q ss_pred EEecceeeEEecCCCeEEEEE-------------------------------EecCCCeeeecCCEEEEEecc
Q 010531 155 VETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 155 VetdKa~~ei~ap~~G~v~~i-------------------------------~~~eG~~~v~vG~~la~i~~~ 196 (508)
+-.-+...+|.|+.+|+|..| +++.|| .|..|++|+++..+
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~id~~~ig~~~~~lGagr~~~~d~id~~aGi~l~~k~g~-~V~~g~~l~~i~~~ 400 (434)
T PRK06078 329 LPQAKYQIEVPAKESGYISELVADEIGLAAMLLGAGRATKEDEIDLAVGIVLRKKVGD-SVKKGESLATIYAN 400 (434)
T ss_pred cCCCCeEEEEECCCCeEEEEeeHHHHHHHHHHcCCCCCCCCCccCcccCeEeccCCcC-EeCCCCeEEEEeCC
Confidence 445677889999999999988 778997 89999999998843
No 201
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=47.72 E-value=29 Score=38.08 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=33.9
Q ss_pred ecceeeEEecCCCeEEEEE-------------------------------EecCCCeeeecCCEEEEEecc
Q 010531 157 TDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 157 tdKa~~ei~ap~~G~v~~i-------------------------------~~~eG~~~v~vG~~la~i~~~ 196 (508)
..+-..+|.|+.+|+|..| +++.|+ .|..|++|+.+..+
T Consensus 336 ~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGaGR~~~~~~id~~aGi~l~~k~G~-~V~~Gd~l~~i~~~ 405 (440)
T PRK05820 336 TAPHTKPVYADRSGVLSAMDTRALGMAVVRLGGGRRRKGDPIDYSVGLTLHARLGD-RVDAGEPLATLHAD 405 (440)
T ss_pred CCCeEEEEECCCCeEEEEecHHHHHHHHHHhCCCcCCCCCCCCcCCCeEEccCCcC-EECCCCeEEEEeCC
Confidence 4678899999999999887 778997 89999999998743
No 202
>COG4072 Uncharacterized protein conserved in archaea [Function unknown]
Probab=47.67 E-value=36 Score=31.46 Aligned_cols=32 Identities=19% Similarity=0.402 Sum_probs=27.0
Q ss_pred CCCeEEEEEEecCCCeeeecCCEEEEEeccCCc
Q 010531 167 MEEGYLAKIVKGDGSKEIKVGEVIAITVEEEED 199 (508)
Q Consensus 167 p~~G~v~~i~~~eG~~~v~vG~~la~i~~~~~~ 199 (508)
|.+|++.-..+..|+ .+..|+++|-+..-.++
T Consensus 97 PvEGYvVtpIaDvG~-RvrkGd~~AAvttRkG~ 128 (161)
T COG4072 97 PVEGYVVTPIADVGN-RVRKGDPFAAVTTRKGE 128 (161)
T ss_pred ecCcEEEEEeecccc-hhcCCCceeEEEecccc
Confidence 789999999999997 99999999877544433
No 203
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=47.61 E-value=28 Score=35.61 Aligned_cols=36 Identities=19% Similarity=0.351 Sum_probs=30.4
Q ss_pred ceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 159 KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 159 Ka~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
+...-|.||.+|.+. ..++.|+ .|+.||+|+.+.+.
T Consensus 217 ~~~~~v~A~~~G~~~-~~~~~Gd-~V~~G~~ig~i~d~ 252 (287)
T cd06251 217 RSSVWVRAPQGGLLR-SLVKLGD-KVKKGQLLATITDP 252 (287)
T ss_pred cCCeEEecCCCeEEE-EecCCCC-EECCCCEEEEEECC
Confidence 334679999999987 4789997 99999999999764
No 204
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=47.55 E-value=25 Score=35.96 Aligned_cols=37 Identities=8% Similarity=0.100 Sum_probs=30.6
Q ss_pred ceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEeccC
Q 010531 159 KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (508)
Q Consensus 159 Ka~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~ 197 (508)
....-+.||..|.+. ..++.|+ .|+.||+|+++.+.-
T Consensus 221 ~~~~~v~Ap~~G~~~-~~~~~G~-~V~~G~~lg~i~dp~ 257 (288)
T cd06254 221 DDVYYVTSPASGLWY-PFVKAGD-TVQKGALLGYVTDYF 257 (288)
T ss_pred cCCEEEecCCCeEEE-EecCCCC-EecCCCEEEEEECCC
Confidence 345679999999996 5679997 999999999997643
No 205
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.31 E-value=18 Score=37.13 Aligned_cols=21 Identities=38% Similarity=0.647 Sum_probs=18.4
Q ss_pred EEEEccCCCeeCCCCeEEEEE
Q 010531 136 ARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 136 ~~W~v~~Gd~V~~gd~L~eVe 156 (508)
++|++++|+.|+.||+|++++
T Consensus 66 v~~~~~dG~~v~~g~~i~~~~ 86 (277)
T PRK08072 66 VELHKKDGDLVKKGEIIATVQ 86 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEE
Confidence 589999999999999888887
No 206
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=46.54 E-value=21 Score=36.47 Aligned_cols=25 Identities=52% Similarity=0.957 Sum_probs=20.2
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEE
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVe 156 (508)
++--++|++++||.|+.||+|++++
T Consensus 56 ~~l~v~~~~~dG~~v~~g~~i~~i~ 80 (268)
T cd01572 56 PGIEVEWLVKDGDRVEPGQVLATVE 80 (268)
T ss_pred CCeEEEEEeCCCCEecCCCEEEEEE
Confidence 3455688889999999988888887
No 207
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases. This subgroup includes Pseudomonas aeruginosa AotO and related proteins. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD. The gene encoding
Probab=45.89 E-value=30 Score=36.75 Aligned_cols=34 Identities=15% Similarity=0.213 Sum_probs=29.2
Q ss_pred eEEecCCCeEEEEEEecCCCeeeecCCEEEEEeccC
Q 010531 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (508)
Q Consensus 162 ~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~ 197 (508)
.-|.||..|.+. ..++.|+ .|+.|++|+++.+..
T Consensus 290 ~~v~Ap~~Gl~~-~~~~~Gd-~V~~G~~lg~I~d~~ 323 (359)
T cd06250 290 EMLYAPAGGMVV-YRAAPGD-WVEAGDVLAEILDPL 323 (359)
T ss_pred EEEeCCCCeEEE-EecCCCC-EecCCCEEEEEECCC
Confidence 359999999996 5689997 999999999998644
No 208
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=45.74 E-value=35 Score=40.11 Aligned_cols=31 Identities=19% Similarity=0.393 Sum_probs=28.8
Q ss_pred EecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 164 MECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 164 i~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
|-||..|+|.++.+.+|+ .|+.|++|+++..
T Consensus 1082 igApmpG~Vv~v~V~~G~-~Vk~Gd~l~~ieA 1112 (1149)
T COG1038 1082 IGAPMPGVVVEVKVKKGD-KVKKGDVLAVIEA 1112 (1149)
T ss_pred cCCCCCCceEEEEEccCC-eecCCCeeeehhh
Confidence 889999999999999997 8999999998754
No 209
>PRK12784 hypothetical protein; Provisional
Probab=45.54 E-value=31 Score=28.93 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=26.3
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEecce
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetdKa 160 (508)
.|.|....|++||.|..|-.|+.+|.|-.
T Consensus 51 SG~I~~v~Ve~Gq~i~~dtlL~~~edDll 79 (84)
T PRK12784 51 SGNIRLVNVVVGQQIHTDTLLVRLEDDLL 79 (84)
T ss_pred eeeEEEEEeecCceecCCcEEEEEeeceE
Confidence 38999999999999999999999997743
No 210
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex
Probab=45.33 E-value=22 Score=39.91 Aligned_cols=30 Identities=30% Similarity=0.565 Sum_probs=25.5
Q ss_pred CCCeEEEEEEEccCCC-eeCCCCeEEEEEec
Q 010531 129 TMQEGNIARWLKKEGD-KVSPGEVLCEVETD 158 (508)
Q Consensus 129 ~~~eg~I~~W~v~~Gd-~V~~gd~L~eVetd 158 (508)
...+|+|.++++++|| .|..|++||.+..+
T Consensus 160 a~~~G~l~ki~~~eG~~~v~vG~~ia~i~~~ 190 (539)
T PLN02744 160 CMEEGYLAKIVKGDGAKEIKVGEVIAITVEE 190 (539)
T ss_pred CCCCcEEEEEEecCCCcccCCCCEEEEEccC
Confidence 3468999999999996 79999999988533
No 211
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=45.28 E-value=17 Score=39.85 Aligned_cols=28 Identities=32% Similarity=0.247 Sum_probs=23.7
Q ss_pred CCCeEEEEEEEccCCCeeCCCCeEEEEE
Q 010531 129 TMQEGNIARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 129 ~~~eg~I~~W~v~~Gd~V~~gd~L~eVe 156 (508)
.+.-+-=+.|+++.||.|++||+|++|=
T Consensus 375 ~iD~~aGi~l~~k~Gd~V~~Gd~l~~i~ 402 (437)
T TIGR02643 375 TIDYSVGLTDLLPLGDRVEKGEPLAVVH 402 (437)
T ss_pred CcCcccCeEeccCCcCEeCCCCeEEEEE
Confidence 3455566799999999999999999886
No 212
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=44.19 E-value=18 Score=39.68 Aligned_cols=30 Identities=20% Similarity=0.258 Sum_probs=24.8
Q ss_pred CCCCeEEEEEEEccCCCeeCCCCeEEEEEe
Q 010531 128 PTMQEGNIARWLKKEGDKVSPGEVLCEVET 157 (508)
Q Consensus 128 ~~~~eg~I~~W~v~~Gd~V~~gd~L~eVet 157 (508)
..+.-+-=+.|+++.||.|++||+||+|=.
T Consensus 375 ~~id~~aGi~l~~k~G~~V~~Gd~l~~i~~ 404 (440)
T PRK05820 375 DPIDYSVGLTLHARLGDRVDAGEPLATLHA 404 (440)
T ss_pred CCCCcCCCeEEccCCcCEECCCCeEEEEeC
Confidence 345556667999999999999999999873
No 213
>TIGR02994 ectoine_eutE ectoine utilization protein EutE. Members of this family, part of the succinylglutamate desuccinylase / aspartoacylase family (pfam04952), belong to ectoine utilization operons, as found in Sinorhizobium meliloti 1021 (where it the operon is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida.
Probab=43.79 E-value=30 Score=36.28 Aligned_cols=35 Identities=17% Similarity=0.246 Sum_probs=29.8
Q ss_pred eeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 160 ATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 160 a~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
...-|.||..|++. ..++.|+ .|+.||+|+.+.+.
T Consensus 254 ~~~~v~Ap~~Gi~~-~~v~~G~-~V~~G~~lg~I~d~ 288 (325)
T TIGR02994 254 DDCFIFAEDDGLIE-FMIDLGD-PVSKGDVIARVYPV 288 (325)
T ss_pred CCeEEEcCCCeEEE-EecCCCC-EeCCCCEEEEEECC
Confidence 34469999999997 6689997 99999999999863
No 214
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=43.40 E-value=44 Score=34.75 Aligned_cols=36 Identities=17% Similarity=0.131 Sum_probs=30.7
Q ss_pred ceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 159 KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 159 Ka~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
....-|.||..|.+. -.++.|+ .|+.|++|+++.+.
T Consensus 242 ~~~~~v~A~~~G~~~-~~~~~G~-~V~~G~~lg~i~d~ 277 (316)
T cd06252 242 DARCYVFAPHPGLFE-PLVDLGD-EVSAGQVAGRIHFP 277 (316)
T ss_pred CCcEEEEcCCCeEEE-EecCCCC-EEcCCCEEEEEECC
Confidence 445679999999996 6689997 99999999999874
No 215
>TIGR00999 8a0102 Membrane Fusion Protein cluster 2 (function with RND porters).
Probab=42.90 E-value=34 Score=33.71 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=24.0
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEE
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVe 156 (508)
..|.|..+++.+|+.|..|++|+.|-
T Consensus 95 ~dG~V~~~~~~~G~~v~~g~~l~~i~ 120 (265)
T TIGR00999 95 FDGYITQKSVTLGDYVAPQAELFRVA 120 (265)
T ss_pred CCeEEEEEEcCCCCEeCCCCceEEEE
Confidence 46999999999999999999999876
No 216
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.90 E-value=24 Score=36.42 Aligned_cols=22 Identities=18% Similarity=0.466 Sum_probs=18.9
Q ss_pred EEEEEccCCCeeCCCCeEEEEE
Q 010531 135 IARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 135 I~~W~v~~Gd~V~~gd~L~eVe 156 (508)
=++|++++|+.|+.||+|++++
T Consensus 66 ~v~~~~~dG~~v~~G~~i~~~~ 87 (281)
T PRK06543 66 TVTLAVADGERFEAGDILATVT 87 (281)
T ss_pred EEEEEeCCCCEecCCCEEEEEE
Confidence 4589999999999999998887
No 217
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=42.75 E-value=24 Score=36.08 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=18.0
Q ss_pred EEEEEEccCCCeeCCCCeEEEEE
Q 010531 134 NIARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 134 ~I~~W~v~~Gd~V~~gd~L~eVe 156 (508)
.-++|++++|+.|+.||+|++|+
T Consensus 56 ~~v~~~~~dG~~v~~g~~i~~i~ 78 (272)
T cd01573 56 LEVDLAAASGSRVAAGAVLLEAE 78 (272)
T ss_pred cEEEEEcCCCCEecCCCEEEEEE
Confidence 33578888888888888888877
No 218
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.65 E-value=24 Score=36.28 Aligned_cols=21 Identities=33% Similarity=0.735 Sum_probs=19.0
Q ss_pred EEEEccCCCeeCCCCeEEEEE
Q 010531 136 ARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 136 ~~W~v~~Gd~V~~gd~L~eVe 156 (508)
++|++++|+.|++||+|++++
T Consensus 68 ~~~~~~dG~~v~~g~~i~~i~ 88 (277)
T PRK05742 68 VHWQVADGERVSANQVLFHLE 88 (277)
T ss_pred EEEEeCCCCEEcCCCEEEEEE
Confidence 689999999999999998887
No 219
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=42.20 E-value=22 Score=39.45 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=26.8
Q ss_pred CCCCCCeEEEEEEEccCCCeeCCCCeEEEEEe
Q 010531 126 LSPTMQEGNIARWLKKEGDKVSPGEVLCEVET 157 (508)
Q Consensus 126 lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVet 157 (508)
+|-.+.-+-=+.++++.||.|++||+|++|=.
T Consensus 439 ~GAp~d~~aGi~l~~k~Gd~V~~Gd~l~~i~a 470 (493)
T TIGR02645 439 AGAPNDKGAGVELHVKVGDQVKKGDPLYTIYA 470 (493)
T ss_pred cCCCcCcCcCeEEeccCCCEecCCCeEEEEEC
Confidence 45556667778999999999999999999863
No 220
>PRK04350 thymidine phosphorylase; Provisional
Probab=41.66 E-value=23 Score=39.28 Aligned_cols=32 Identities=25% Similarity=0.318 Sum_probs=27.3
Q ss_pred CCCCCCeEEEEEEEccCCCeeCCCCeEEEEEe
Q 010531 126 LSPTMQEGNIARWLKKEGDKVSPGEVLCEVET 157 (508)
Q Consensus 126 lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVet 157 (508)
+|-.+.-+-=+.++++.||.|++||+|+.|=.
T Consensus 431 lGap~d~~aGi~l~~k~Gd~V~~G~~l~~i~a 462 (490)
T PRK04350 431 AGAPKDKGAGIDLHVKVGDKVKKGDPLYTIHA 462 (490)
T ss_pred cCCCcCcccCeEEeccCCCEecCCCeEEEEec
Confidence 45566777778999999999999999999873
No 221
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=41.65 E-value=25 Score=35.81 Aligned_cols=24 Identities=54% Similarity=0.926 Sum_probs=19.9
Q ss_pred EEEEEEEccCCCeeCCCCeEEEEE
Q 010531 133 GNIARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 133 g~I~~W~v~~Gd~V~~gd~L~eVe 156 (508)
+-=++|++++|+.|+.||+|++|+
T Consensus 56 ~~~v~~~~~dG~~v~~g~~i~~i~ 79 (269)
T cd01568 56 GIEVEWLVKDGDRVEAGQVLLEVE 79 (269)
T ss_pred CeEEEEEeCCCCEecCCCEEEEEE
Confidence 344579999999999999998888
No 222
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism]
Probab=41.51 E-value=22 Score=39.59 Aligned_cols=32 Identities=16% Similarity=0.360 Sum_probs=28.9
Q ss_pred EecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 164 MECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 164 i~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
+-||..|+|.++++++|+ .|..|+.|+++...
T Consensus 604 ~~aPMpG~Iekv~Vkpgd-~V~~Gq~l~Vl~AM 635 (670)
T KOG0238|consen 604 IVAPMPGIIEKVLVKPGD-KVKEGQELVVLIAM 635 (670)
T ss_pred eecCCCCeeeeeeccchh-hhcccCceEEEEec
Confidence 789999999999999997 89999999987543
No 223
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=41.42 E-value=26 Score=36.21 Aligned_cols=21 Identities=14% Similarity=0.235 Sum_probs=17.6
Q ss_pred EEEEccCCCeeCCCCeEEEEE
Q 010531 136 ARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 136 ~~W~v~~Gd~V~~gd~L~eVe 156 (508)
++|++++||.|++||+|++++
T Consensus 63 v~~~~~dG~~v~~G~~i~~~~ 83 (284)
T PRK06096 63 IDDAVSDGSQANAGQRLISAQ 83 (284)
T ss_pred EEEEeCCCCEeCCCCEEEEEE
Confidence 588888888888888888776
No 224
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=41.04 E-value=47 Score=38.21 Aligned_cols=41 Identities=22% Similarity=0.326 Sum_probs=33.7
Q ss_pred CCeEEEEEecceeeEEecCCCeEEEEE-----------------------------------EecCCCeeeecCCEEEEE
Q 010531 149 GEVLCEVETDKATVEMECMEEGYLAKI-----------------------------------VKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 149 gd~L~eVetdKa~~ei~ap~~G~v~~i-----------------------------------~~~eG~~~v~vG~~la~i 193 (508)
||-++..=+| -.|.||++|+|..+ ++++|| .|+.||+|+.+
T Consensus 526 G~GvaI~P~~---~~v~AP~~G~v~~v~~T~HA~gi~t~~G~eiLIHiGidTV~l~G~gF~~~Vk~Gd-~V~~G~~l~~~ 601 (648)
T PRK10255 526 GDGVAVKPTD---KIVVSPAAGTIVKIFNTNHAFCLETEKGAEIVVHMGIDTVALEGKGFKRLVEEGA-QVSAGQPILEM 601 (648)
T ss_pred cCcEEEeCCC---CeEEecCCeEEEEEcCCCcEEEEEcCCCCEEEEEeccchhccCCCCceEEecCCC-EEcCCCEEEEE
Confidence 7777766665 47899999999877 688997 89999999886
No 225
>PRK03140 phosphatidylserine decarboxylase; Provisional
Probab=40.96 E-value=31 Score=35.03 Aligned_cols=51 Identities=24% Similarity=0.277 Sum_probs=35.3
Q ss_pred ccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEE
Q 010531 140 KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (508)
Q Consensus 140 v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~ 192 (508)
..+|+.|++||.+.-++-. .++.+--|.+-+--...+.+|+ .|..|+.|+.
T Consensus 207 ~~~g~~v~kGee~G~F~fG-Stvvllf~~~~~~~~~~~~~g~-~V~~Ge~ig~ 257 (259)
T PRK03140 207 THERDTVQKGEEMAYFSFG-STVVLLFEKDMIEPDQELKSGQ-EVRLGEKIGT 257 (259)
T ss_pred ecCCCEEecCcEeeeeccC-CeEEEEEeCCccccchhhcCCC-EEEcChhhcc
Confidence 3578899999999888877 6666555543222234567886 7888888864
No 226
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.81 E-value=27 Score=36.16 Aligned_cols=22 Identities=32% Similarity=0.410 Sum_probs=19.1
Q ss_pred EEEEEccCCCeeCCCCeEEEEE
Q 010531 135 IARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 135 I~~W~v~~Gd~V~~gd~L~eVe 156 (508)
-.+|++++|+.|++||+|++++
T Consensus 73 ~~~~~~~dG~~v~~g~~i~~~~ 94 (288)
T PRK07428 73 SFTPLVAEGAACESGQVVAEIE 94 (288)
T ss_pred EEEEEcCCCCEecCCCEEEEEE
Confidence 3579999999999999999887
No 227
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=40.71 E-value=24 Score=39.29 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=27.2
Q ss_pred CCCCCCeEEEEEEEccCCCeeCCCCeEEEEEe
Q 010531 126 LSPTMQEGNIARWLKKEGDKVSPGEVLCEVET 157 (508)
Q Consensus 126 lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVet 157 (508)
+|-.+.-+-=+.++++.||.|++||+|++|=.
T Consensus 440 lGA~id~~aGi~l~~k~Gd~V~~G~pl~~i~a 471 (500)
T TIGR03327 440 AGAPNDKGAGVYLHVKVGEKVKKGDPLYTIYA 471 (500)
T ss_pred cCCCcCcccCeEEeccCcCEeCCCCeEEEEEC
Confidence 45566777778999999999999999999873
No 228
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=40.62 E-value=22 Score=38.97 Aligned_cols=30 Identities=27% Similarity=0.302 Sum_probs=25.3
Q ss_pred CCeEEEEEEEccCCCeeCCCCeEEEEEecc
Q 010531 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (508)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~gd~L~eVetdK 159 (508)
+.-+-=+.|+++.||.|++||+|++|=.|+
T Consensus 372 id~~aGi~l~~k~g~~V~~g~~l~~i~~~~ 401 (434)
T PRK06078 372 IDLAVGIVLRKKVGDSVKKGESLATIYANR 401 (434)
T ss_pred cCcccCeEeccCCcCEeCCCCeEEEEeCCh
Confidence 455666799999999999999999987654
No 229
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=40.26 E-value=23 Score=38.41 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=24.5
Q ss_pred CCeEEEEEEEccCCCeeCCCCeEEEEEec
Q 010531 130 MQEGNIARWLKKEGDKVSPGEVLCEVETD 158 (508)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~gd~L~eVetd 158 (508)
+.-+-=+.++++.||.|++||+|+.|=++
T Consensus 370 id~~aGi~l~~k~G~~V~~g~~l~~i~~~ 398 (405)
T TIGR02644 370 IDHEAGIYLHKKTGDRVKKGDPLATLYSS 398 (405)
T ss_pred CCcCCCeEEecCCcCEeCCCCeEEEEeCC
Confidence 55566678999999999999999998743
No 230
>PRK10255 PTS system N-acetyl glucosamine specific transporter subunits IIABC; Provisional
Probab=39.93 E-value=39 Score=38.92 Aligned_cols=29 Identities=34% Similarity=0.483 Sum_probs=25.2
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEecce
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetdKa 160 (508)
+|+--+.+|++||+|++||+|+++.-++.
T Consensus 578 ~G~gF~~~Vk~Gd~V~~G~~l~~~D~~~i 606 (648)
T PRK10255 578 EGKGFKRLVEEGAQVSAGQPILEMDLDYL 606 (648)
T ss_pred CCCCceEEecCCCEEcCCCEEEEEcHHHH
Confidence 46677899999999999999999987654
No 231
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.77 E-value=29 Score=36.10 Aligned_cols=22 Identities=32% Similarity=0.809 Sum_probs=18.2
Q ss_pred EEEEEccCCCeeCCCCeEEEEE
Q 010531 135 IARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 135 I~~W~v~~Gd~V~~gd~L~eVe 156 (508)
-++|+++.||.|++||+|++++
T Consensus 83 ~v~~~~~dG~~v~~G~~i~~~~ 104 (294)
T PRK06978 83 EVTWRYREGDRMTADSTVCELE 104 (294)
T ss_pred EEEEEcCCCCEeCCCCEEEEEE
Confidence 3588888888888888888876
No 232
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=39.74 E-value=53 Score=35.78 Aligned_cols=42 Identities=29% Similarity=0.423 Sum_probs=34.7
Q ss_pred EEEecceeeEEecCCCeEEEEE-------------------------------EecCCCeeeecCCEEEEEecc
Q 010531 154 EVETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 154 eVetdKa~~ei~ap~~G~v~~i-------------------------------~~~eG~~~v~vG~~la~i~~~ 196 (508)
.+..-+...+|.|..+|+|.++ ..+.|| .|++|++|+.+..+
T Consensus 329 ~l~~~~~~~~v~A~~~G~v~~id~~~ig~~a~~lGAgR~~k~d~iD~~aGi~l~kk~ge-~Vk~Gd~l~tiya~ 401 (435)
T COG0213 329 YLPVAKYTAEVKAQTSGYVSEIDARAIGMAAMELGAGRATKTDRIDKGAGIYLHKKLGE-KVKKGDPLATIYAE 401 (435)
T ss_pred hcccCceEEEEeccCceeEEeechHHHHHHHHHhCCCCCCcccccCcccceEEEecCCC-eeccCCeEEEEecC
Confidence 4455678888999999999887 678897 89999999998763
No 233
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=39.68 E-value=29 Score=36.14 Aligned_cols=21 Identities=24% Similarity=0.612 Sum_probs=17.1
Q ss_pred EEEEccCCCeeCCCCeEEEEE
Q 010531 136 ARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 136 ~~W~v~~Gd~V~~gd~L~eVe 156 (508)
++|++++|+.|++||+|++++
T Consensus 87 v~~~~~dG~~v~~G~~i~~i~ 107 (296)
T PRK09016 87 IEWHVDDGDVITANQTLFELT 107 (296)
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 578888888888888888777
No 234
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.45 E-value=29 Score=35.61 Aligned_cols=21 Identities=29% Similarity=0.667 Sum_probs=17.7
Q ss_pred EEEEccCCCeeCCCCeEEEEE
Q 010531 136 ARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 136 ~~W~v~~Gd~V~~gd~L~eVe 156 (508)
.+|++++|+.|+.||+|++++
T Consensus 60 ~~~~~~dG~~v~~g~~i~~i~ 80 (273)
T PRK05848 60 CVFTIKDGERFKKGDILMEIE 80 (273)
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 588888888888888888877
No 235
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.87 E-value=30 Score=35.86 Aligned_cols=22 Identities=27% Similarity=0.373 Sum_probs=17.8
Q ss_pred EEEEEccCCCeeCCCCeEEEEE
Q 010531 135 IARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 135 I~~W~v~~Gd~V~~gd~L~eVe 156 (508)
=++|++++|+.|++||+|++++
T Consensus 77 ~v~~~~~dG~~v~~g~~i~~i~ 98 (289)
T PRK07896 77 EVLDRVEDGARVPPGQALLTVT 98 (289)
T ss_pred EEEEEcCCCCEecCCCEEEEEE
Confidence 3578888888888888888877
No 236
>TIGR01995 PTS-II-ABC-beta PTS system, beta-glucoside-specific IIABC component. This model represents a family of PTS enzyme II proteins in which all three domains are found in the same polypeptide chain and which appear to have a broad specificity for beta-glucosides including salicin (beta-D-glucose-1-salicylate) and arbutin (Hydroquinone-O-beta-D-glucopyranoside). These are distinct from the closely related sucrose-specific and trehalose-specific PTS transporters.
Probab=38.77 E-value=55 Score=37.36 Aligned_cols=57 Identities=18% Similarity=0.304 Sum_probs=40.5
Q ss_pred eEEEEEEEccCCCeeCC----CCeEEEEEecceeeEEecCCCeEEEEE--------------------------------
Q 010531 132 EGNIARWLKKEGDKVSP----GEVLCEVETDKATVEMECMEEGYLAKI-------------------------------- 175 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~----gd~L~eVetdKa~~ei~ap~~G~v~~i-------------------------------- 175 (508)
+|++... .++-|.|=. ||-++..=+| -.|.||++|+|..+
T Consensus 470 ~G~~~~l-~~v~D~vFs~~~~G~G~ai~P~~---~~v~aP~~G~v~~~~~t~Ha~gi~~~~G~eiliHiGidTv~l~g~g 545 (610)
T TIGR01995 470 AGEMLPL-NEVPDEVFSSGAMGKGIAILPTE---GEVVAPVDGTVTAVFPTKHAIGIRSDNGIEILIHVGIDTVELNGEG 545 (610)
T ss_pred ceEEeeH-hhCCCccccccCcCCceEeeCCC---CEEECCCCeEEEEEcCCCCEEEEEECCCcEEEEEeccchhccCCCC
Confidence 4555554 345555544 6666655544 47889999988876
Q ss_pred ---EecCCCeeeecCCEEEEE
Q 010531 176 ---VKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 176 ---~~~eG~~~v~vG~~la~i 193 (508)
++++|| .|+.||+|+.+
T Consensus 546 F~~~v~~g~-~V~~G~~l~~~ 565 (610)
T TIGR01995 546 FEILVKVGD-HVKAGQLLLTF 565 (610)
T ss_pred eEEEecCcC-EEcCCCEEEEe
Confidence 789997 89999999886
No 237
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=38.69 E-value=30 Score=36.19 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=17.8
Q ss_pred EEEEEccCCCeeCCCCeEEEEE
Q 010531 135 IARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 135 I~~W~v~~Gd~V~~gd~L~eVe 156 (508)
-++|++++|+.|++||+|++++
T Consensus 79 ~v~~~~~dG~~v~~G~~i~~v~ 100 (308)
T PLN02716 79 KVEWAAIDGDFVHKGLKFGKVT 100 (308)
T ss_pred EEEEEeCCCCEecCCCEEEEEE
Confidence 3568888888888888888877
No 238
>PRK04192 V-type ATP synthase subunit A; Provisional
Probab=38.35 E-value=67 Score=36.55 Aligned_cols=57 Identities=26% Similarity=0.402 Sum_probs=42.8
Q ss_pred EccCCCeeCCCCeEEEEEecc-e--eeEEecCCCeEEEEEEecCCCeeeecCCEEEEEeccCC
Q 010531 139 LKKEGDKVSPGEVLCEVETDK-A--TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (508)
Q Consensus 139 ~v~~Gd~V~~gd~L~eVetdK-a--~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~~ 198 (508)
.+++||.|..||+|.+|.-.. . -+=++.-..|.+..| +.+|+ ..+-++|+.+.+.++
T Consensus 123 ~~k~gd~v~~gdi~g~v~e~~~~~h~imvp~~~~g~~~~i-~~~G~--ytv~~~i~~~~~~~G 182 (586)
T PRK04192 123 TVKVGDKVEAGDILGTVQETPSIEHKIMVPPGVSGTVKEI-VSEGD--YTVDDTIAVLEDEDG 182 (586)
T ss_pred ccccCCEecCCceEEEEecCCceeeeeecCCCCceEEEEE-ccCCC--ceeeeEEEEEEccCC
Confidence 478999999999999987431 1 122566679999876 58885 899999998865443
No 239
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.18 E-value=31 Score=35.59 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=19.0
Q ss_pred EEEEEEccCCCeeCCCCeEEEEE
Q 010531 134 NIARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 134 ~I~~W~v~~Gd~V~~gd~L~eVe 156 (508)
.-++|++++|+.|++||+|++++
T Consensus 70 ~~~~~~~~dG~~v~~g~~i~~i~ 92 (281)
T PRK06106 70 IEMRRHLPDGAAVAPGDVIATIS 92 (281)
T ss_pred eEEEEEeCCCCEEcCCCEEEEEE
Confidence 44688888999999998888887
No 240
>PRK09824 PTS system beta-glucoside-specific transporter subunits IIABC; Provisional
Probab=37.81 E-value=55 Score=37.59 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=42.4
Q ss_pred CeEEEEEEEccCCCeeCC----CCeEEEEEecceeeEEecCCCeEEEEE-------------------------------
Q 010531 131 QEGNIARWLKKEGDKVSP----GEVLCEVETDKATVEMECMEEGYLAKI------------------------------- 175 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~----gd~L~eVetdKa~~ei~ap~~G~v~~i------------------------------- 175 (508)
-+|++...- ++-|.|=. ||-++..=+| -+|.||++|+|..+
T Consensus 485 ~~G~v~~L~-~v~D~vFs~~~mG~G~AI~P~~---~~v~AP~~G~v~~vf~T~HAigi~t~~G~eiLiHiGiDTV~L~G~ 560 (627)
T PRK09824 485 MTGEVVPLE-QVADTTFASGLLGKGIAILPSV---GEVRSPVAGRVASLFATLHAIGLESDDGVEVLIHVGIDTVKLDGK 560 (627)
T ss_pred cceEEeeHH-HCCCccccccccCCceEecCCC---CeEEccCCeEEEEEcCCCcEEEEEeCCCcEEEEEechhhhhcCCC
Confidence 356665543 55665554 6666665554 47899999999876
Q ss_pred ----EecCCCeeeecCCEEEEE
Q 010531 176 ----VKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 176 ----~~~eG~~~v~vG~~la~i 193 (508)
++++|| .|+.||+|..+
T Consensus 561 gF~~~v~~Gd-~V~~G~~l~~~ 581 (627)
T PRK09824 561 FFTAHVNVGD-KVNTGDLLIEF 581 (627)
T ss_pred CceEEecCCC-EEcCCCEEEEE
Confidence 788997 89999999886
No 241
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=37.73 E-value=32 Score=35.05 Aligned_cols=21 Identities=62% Similarity=1.183 Sum_probs=18.0
Q ss_pred EEEEccCCCeeCCCCeEEEEE
Q 010531 136 ARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 136 ~~W~v~~Gd~V~~gd~L~eVe 156 (508)
++|++++|+.|+.||+|++++
T Consensus 56 v~~~~~dG~~v~~g~~i~~i~ 76 (265)
T TIGR00078 56 VEWLVKDGDRVEPGEVVAEVE 76 (265)
T ss_pred EEEEeCCCCEecCCCEEEEEE
Confidence 478999999999999888887
No 242
>TIGR00163 PS_decarb phosphatidylserine decarboxylase precursor. Phosphatidylserine decarboxylase is synthesized as a single chain precursor. Generation of the pyruvoyl active site from a Ser is coupled to cleavage of a Gly-Ser bond between the larger (beta) and smaller (alpha chains). It is an integral membrane protein. A closely related family, possibly also active as phosphatidylserine decarboxylase, falls under model TIGR00164.
Probab=37.69 E-value=32 Score=34.41 Aligned_cols=48 Identities=25% Similarity=0.299 Sum_probs=36.5
Q ss_pred CCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEE
Q 010531 143 GDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (508)
Q Consensus 143 Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~ 192 (508)
|+.|++||.+.-++-- .++.+--|.+-+-.+..+.+|+ .|..|+.|++
T Consensus 189 g~~v~kGee~G~F~fG-StVvllf~~~~~~~~~~v~~g~-kV~~Ge~lg~ 236 (238)
T TIGR00163 189 PVKLLKGEEMGYFELG-STVILLFEADAFQLSAHLAVGQ-EVKIGELLAY 236 (238)
T ss_pred CceeccccEeeeEcCC-CeEEEEEeCCCcccChhhccCC-EEEcChhhcc
Confidence 9999999999999974 6666665543222256778997 8999999864
No 243
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=37.29 E-value=33 Score=35.36 Aligned_cols=22 Identities=32% Similarity=0.576 Sum_probs=17.6
Q ss_pred EEEEEccCCCeeCCCCeEEEEE
Q 010531 135 IARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 135 I~~W~v~~Gd~V~~gd~L~eVe 156 (508)
-++|++++|+.|+.||+|++++
T Consensus 59 ~v~~~~~dG~~v~~g~~i~~i~ 80 (278)
T PRK08385 59 KVEVRKRDGEEVKAGEVILELK 80 (278)
T ss_pred EEEEEcCCCCEecCCCEEEEEE
Confidence 3578888888888888888777
No 244
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=36.44 E-value=51 Score=35.34 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=36.7
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEE-------EecCCCeeeecCCEEE
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKI-------VKGDGSKEIKVGEVIA 191 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i-------~~~eG~~~v~vG~~la 191 (508)
+|+-....+.|-... +...+..--+|-|-.+|+|.++ ++++|| .|+.||+|.
T Consensus 167 ~GT~l~I~v~E~~~p-------~~~~~~~p~~lVA~kdGvI~~i~v~~G~p~Vk~Gd-~VkkGdvLI 225 (385)
T PF06898_consen 167 KGTRLIIEVVEKVDP-------EEIDKEEPCNLVAKKDGVITSIIVRSGTPLVKVGD-TVKKGDVLI 225 (385)
T ss_pred EeeEEEEEEEEcCCC-------CcccCCCCcceEECCCCEEEEEEecCCeEEecCCC-EECCCCEEE
Confidence 566666666654433 3333556678999999999998 457776 788888884
No 245
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function. ; PDB: 3D4R_D.
Probab=36.40 E-value=30 Score=32.51 Aligned_cols=44 Identities=23% Similarity=0.496 Sum_probs=27.3
Q ss_pred eeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEeccCCcc
Q 010531 145 KVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDI 200 (508)
Q Consensus 145 ~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~~~~ 200 (508)
.+++|+-|+.++. +|+..-+.+.+|+ .|..|+.||.+.....++
T Consensus 75 ~l~~G~~L~l~~v-----------eG~~v~~i~~~G~-rV~~gd~lA~v~T~KGeV 118 (150)
T PF09891_consen 75 LLKKGTELCLVPV-----------EGYQVYPIVDEGD-RVRKGDRLAYVTTRKGEV 118 (150)
T ss_dssp EE-TT-B-EEEEE-----------ESSEEEESS-TSE-EE-TT-EEEEEE-TTS-E
T ss_pred EECCCCEEEEEEe-----------cceEEEEEcccCc-EeccCcEEEEEEecCcce
Confidence 3677777888773 4666678899997 999999999987655544
No 246
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=36.21 E-value=35 Score=35.11 Aligned_cols=22 Identities=18% Similarity=0.330 Sum_probs=17.2
Q ss_pred EEEEEccCCCeeCCCCeEEEEE
Q 010531 135 IARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 135 I~~W~v~~Gd~V~~gd~L~eVe 156 (508)
-++|+++.|+.|+.|++|++++
T Consensus 61 ~~~~~~~dG~~v~~g~~i~~~~ 82 (277)
T TIGR01334 61 SIDYAVPSGSRALAGTLLLEAK 82 (277)
T ss_pred EEEEEeCCCCEeCCCCEEEEEE
Confidence 3578888888888888888777
No 247
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ]. It has slightly different conformations in different members of this family. For example, in pyrimidine nucleoside phosphorylase (PYNP, P77826 from SWISSPROT) there is an added three-stranded anti-parallel beta sheet as compared to other members of the family, such as Escherichia coli thymidine phosphorylase (TP, P07650 from SWISSPROT) []. The domain contains an alpha/ beta hammerhead fold and residues in this domain seem to be important in formation of the homodimer []. ; GO: 0016763 transferase activity, transferring pentosyl groups, 0006213 pyrimidine nucleoside metabolic process; PDB: 1AZY_A 1OTP_A 2TPT_A 3H5Q_A 1BRW_A 2WK5_C 2J0F_C 2WK6_B 1UOU_A 2DSJ_B ....
Probab=35.81 E-value=45 Score=27.42 Aligned_cols=29 Identities=21% Similarity=0.306 Sum_probs=20.8
Q ss_pred CCCeEEEEEEecCCCeeeecCCEEEEEeccCC
Q 010531 167 MEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (508)
Q Consensus 167 p~~G~v~~i~~~eG~~~v~vG~~la~i~~~~~ 198 (508)
|..|+. +.++.|| .|..|++|+++....+
T Consensus 30 ~~vGi~--l~~k~Gd-~V~~Gd~l~~i~~~~~ 58 (75)
T PF07831_consen 30 PAVGIE--LHKKVGD-RVEKGDPLATIYANDE 58 (75)
T ss_dssp TT-EEE--ESS-TTS-EEBTTSEEEEEEESSS
T ss_pred cCcCeE--ecCcCcC-EECCCCeEEEEEcCCh
Confidence 445654 6789997 9999999999876543
No 248
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=35.01 E-value=78 Score=35.96 Aligned_cols=53 Identities=32% Similarity=0.431 Sum_probs=40.9
Q ss_pred ccCCCeeCCCCeEEEE-EecceeeE--EecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 140 KKEGDKVSPGEVLCEV-ETDKATVE--MECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 140 v~~Gd~V~~gd~L~eV-etdKa~~e--i~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
+++||.|..||++++| ||.-.+.. ++.-..|+|..| +.+|+ ..+-++|+.+..
T Consensus 121 ~~~gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i-~~~g~--~~~~~~v~~~~~ 176 (578)
T TIGR01043 121 VKEGDKVEGGDIIGVVPETSLIEHKILVPPNVEGEIVEI-AEEGD--YTVEDTIAVVDT 176 (578)
T ss_pred cccCccccCCceEEEEecccceeeeeecCCCCcceEEEe-ccCCC--ceeeeeEEEEec
Confidence 7899999999999988 44443333 445579999876 57885 899999998753
No 249
>COG3608 Predicted deacylase [General function prediction only]
Probab=33.79 E-value=73 Score=33.69 Aligned_cols=43 Identities=12% Similarity=0.212 Sum_probs=33.3
Q ss_pred CeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 150 EVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 150 d~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
......+++ .--+.||..|.|. .++..|| .|..|++|+++.+.
T Consensus 247 ~~~~~~~~~--~~~i~Ap~~G~v~-~~v~lGd-~VeaG~~la~i~~~ 289 (331)
T COG3608 247 TKGLALPSS--DEMIRAPAGGLVE-FLVDLGD-KVEAGDVLATIHDP 289 (331)
T ss_pred cceeecccc--cceeecCCCceEE-EeecCCC-cccCCCeEEEEecC
Confidence 334445555 3459999999885 7899997 89999999998754
No 250
>PF06898 YqfD: Putative stage IV sporulation protein YqfD; InterPro: IPR010690 This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis (P54469 from SWISSPROT) is known to be essential for efficient sporulation although its exact function is unknown [].
Probab=33.63 E-value=55 Score=35.09 Aligned_cols=24 Identities=42% Similarity=0.624 Sum_probs=19.9
Q ss_pred CeEEEEEE-------EccCCCeeCCCCeEEE
Q 010531 131 QEGNIARW-------LKKEGDKVSPGEVLCE 154 (508)
Q Consensus 131 ~eg~I~~W-------~v~~Gd~V~~gd~L~e 154 (508)
.+|.|.+. +|++||.|++||+|..
T Consensus 196 kdGvI~~i~v~~G~p~Vk~Gd~VkkGdvLIS 226 (385)
T PF06898_consen 196 KDGVITSIIVRSGTPLVKVGDTVKKGDVLIS 226 (385)
T ss_pred CCCEEEEEEecCCeEEecCCCEECCCCEEEe
Confidence 56788877 4789999999999973
No 251
>PF01551 Peptidase_M23: Peptidase family M23; InterPro: IPR016047 Members of this family are zinc metallopeptidases with a range of specificities. The peptidase family M23 is included in this family, these are Gly-Gly endopeptidases. Peptidase family M23 are also endopeptidases. This family also includes some bacterial lipoproteins such as Swiss:P33648 for which no proteolytic activity has been demonstrated. This family also includes leukocyte cell-derived chemotaxin 2 (LECT2) proteins. LECT2 is a liver-specific protein which is thought to be linked to hepatocyte growth although the exact function of this protein is unknown.; PDB: 3IT5_A 3IT7_B 2GU1_A 3NYY_A 2HSI_B 3SLU_B 3UZ0_D 3TUF_B 1QWY_A 2B44_B ....
Probab=32.54 E-value=37 Score=28.37 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=17.4
Q ss_pred EEEEEccCCCeeCCCCeEEEEEec
Q 010531 135 IARWLKKEGDKVSPGEVLCEVETD 158 (508)
Q Consensus 135 I~~W~v~~Gd~V~~gd~L~eVetd 158 (508)
+..-.+++||.|++||.|+.+...
T Consensus 52 l~~~~v~~G~~V~~G~~IG~~g~~ 75 (96)
T PF01551_consen 52 LDSVSVKVGDRVKAGQVIGTVGNT 75 (96)
T ss_dssp ESEESS-TTSEE-TTCEEEEEBSC
T ss_pred cccccceecccccCCCEEEecCCC
Confidence 334448999999999999999853
No 252
>PRK14698 V-type ATP synthase subunit A; Provisional
Probab=31.89 E-value=86 Score=38.08 Aligned_cols=69 Identities=32% Similarity=0.448 Sum_probs=49.7
Q ss_pred EEecCCCCCCCCeEEEEEEE----ccCCCeeCCCCeEEEEE-ecceeeE--EecCCCeEEEEEEecCCCeeeecCCEEEE
Q 010531 120 EIGMPSLSPTMQEGNIARWL----KKEGDKVSPGEVLCEVE-TDKATVE--MECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (508)
Q Consensus 120 ~i~mP~lg~~~~eg~I~~W~----v~~Gd~V~~gd~L~eVe-tdKa~~e--i~ap~~G~v~~i~~~eG~~~v~vG~~la~ 192 (508)
=|.+|.|..+. +|. +++||.|..||++.+|. |.=.+-- ++.-..|+|+.| +.+|+ ..|-++|+.
T Consensus 106 g~~~~~l~~~~------~w~f~p~~~~g~~~~~g~~~g~~~e~~~~~h~i~~p~~~~g~~~~~-~~~g~--~~~~~~~~~ 176 (1017)
T PRK14698 106 GISAPALPRDK------KWHFIPKVKVGDKVVGGDIIGEVPETSIITHKIMVPPGIEGEIVEI-ADEGE--YTIEEVIAK 176 (1017)
T ss_pred CCCCCCCCCCC------eeeeEeeeecCCCccCCCEEEEEecCCceeEeEecCCCCCEEEEEE-cCCCC--cceeeEEEE
Confidence 45567776642 453 68899999999999885 3333333 455669999876 57895 899999999
Q ss_pred EeccC
Q 010531 193 TVEEE 197 (508)
Q Consensus 193 i~~~~ 197 (508)
+...+
T Consensus 177 ~~~~~ 181 (1017)
T PRK14698 177 VKTPS 181 (1017)
T ss_pred EEcCC
Confidence 86533
No 253
>PRK00044 psd phosphatidylserine decarboxylase; Reviewed
Probab=31.41 E-value=51 Score=33.97 Aligned_cols=58 Identities=19% Similarity=0.176 Sum_probs=40.0
Q ss_pred EEEEEEccC----CCeeCCCCeEEEEEecceeeEEecCCCeEEE-EEEecCCCeeeecCCEEEEEe
Q 010531 134 NIARWLKKE----GDKVSPGEVLCEVETDKATVEMECMEEGYLA-KIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 134 ~I~~W~v~~----Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~-~i~~~eG~~~v~vG~~la~i~ 194 (508)
.|..|.... |..|++||.+.-++-. .++.+--|.+ .+. ...+.+|+ .|..|+.|+.+.
T Consensus 224 ~~~~~~~~~~~~~~~~v~kGee~G~F~fG-StVvllfe~~-~~~~~~~v~~g~-kV~~Ge~ig~~~ 286 (288)
T PRK00044 224 IIKRWDYPEAGDGAITLKKGAEMGRFKLG-STVINLFPPG-KVQLAEQLQAGS-VVRMGQPLAHIT 286 (288)
T ss_pred cceeeeccccccCCCeEccccEeecccCC-CeEEEEEeCC-CceeccccCCCC-EEEcChhhcCcc
Confidence 455565532 7799999999999974 5665554443 331 23467897 899999998754
No 254
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=28.76 E-value=51 Score=34.90 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=20.8
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEe
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVET 157 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVet 157 (508)
.+++ |++++|+.|..|++|++||-
T Consensus 69 ~~~v--~~~~dG~~v~~g~~il~i~G 92 (343)
T PRK08662 69 PVDV--YALPEGTLFDPKEPVMRIEG 92 (343)
T ss_pred CcEE--EEeCCCCEecCCceEEEEEE
Confidence 4554 89999999999999999984
No 255
>cd05789 S1_Rrp4 S1_Rrp4: Rrp4 S1-like RNA-binding domain. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. Rrp4 protein is a subunit of the exosome complex. The exosome plays a central role in 3' to 5' RNA processing and degradation in eukarytes and archaea. Its functions include the removal of incorrectly processed RNA and the maintenance of proper levels of mRNA, rRNA and a number of small RNA species. In Saccharomyces cerevisiae, the exosome includes nine core components, six of which are homologous to bacterial RNase PH. These form a hexameric ring structure. The other three subunits (RrP4, Rrp40, and Csl4) contain an S1 RNA binding domain and are part of the "S1 pore structure".
Probab=28.53 E-value=48 Score=27.08 Aligned_cols=55 Identities=24% Similarity=0.261 Sum_probs=35.4
Q ss_pred EEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecC----------CCeeeecCCEE-EEEec
Q 010531 138 WLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD----------GSKEIKVGEVI-AITVE 195 (508)
Q Consensus 138 W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~e----------G~~~v~vG~~l-a~i~~ 195 (508)
|..++||.| .|.+ ..+..+.+.+++..+.+|.|..-.... .+ .+++|+.| +.+..
T Consensus 2 y~p~~GdiV-~g~V-~~i~~~g~~v~i~~~~~G~l~~se~~~~~~~~~~~~~~~-~l~vGd~i~~~V~~ 67 (86)
T cd05789 2 YIPEVGDVV-IGRV-TEVGFKRWKVDINSPYDAVLPLSEVNLPRTDEDELNMRS-YLDEGDLIVAEVQS 67 (86)
T ss_pred CcCCCCCEE-EEEE-EEECCCEEEEECCCCeEEEEEHHHccCCCCccchHHHHh-hCCCCCEEEEEEEE
Confidence 556777777 3433 346667788889888999987433221 21 47899998 44443
No 256
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins. The Na+-translocating NADH: ubiquinone oxidoreductase (Na+-NQR) generates an electrochemical Na+ potential driven by aerobic respiration [].; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0006814 sodium ion transport, 0055114 oxidation-reduction process
Probab=28.53 E-value=45 Score=34.01 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=25.9
Q ss_pred EEecCCCeEEEEEEecCCCeeeecCCEEEE
Q 010531 163 EMECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (508)
Q Consensus 163 ei~ap~~G~v~~i~~~eG~~~v~vG~~la~ 192 (508)
-+...+-|..-+++++||| .|+.||+|++
T Consensus 31 l~~~Df~g~~Pkm~VkeGD-~Vk~Gq~LF~ 59 (257)
T PF05896_consen 31 LLPDDFPGMKPKMLVKEGD-RVKAGQPLFE 59 (257)
T ss_pred EcCcccCCCCccEEeccCC-EEeCCCeeEe
Confidence 3677889999999999997 9999999986
No 257
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion]
Probab=28.26 E-value=53 Score=36.09 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=26.1
Q ss_pred cCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 166 CMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 166 ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
....|.|.++..+||| -+..|++|+++..+
T Consensus 49 TMeeGnIvsW~kKeGd-kls~GDvl~EVETD 78 (470)
T KOG0557|consen 49 TMEEGNIVSWKKKEGD-KLSAGDVLLEVETD 78 (470)
T ss_pred cccCCceeeEeeccCC-ccCCCceEEEEecc
Confidence 3578999999999998 89999999998543
No 258
>cd06910 M14_ASTE_ASPA_like_7 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases. ASTE catalyzes the fifth and last step in arginine catabolism by the arginine succinyltransferase pathway, and aspartoacylase (ASPA, also known as aminoacylase 2, and ACY-2; EC:3.5.1.15) cleaves N-acetyl L-aspartic acid (NAA) into aspartate and acetate. NAA is abundant in the brain, and hydrolysis of NAA by ASPA may help maintain white matter. ASPA is an NAA scavenger in other tissues. Mutations in the gene encoding ASPA cause Canavan disease (CD), a fatal progressive neurodegenerative disorder involving dysmyelination and spongiform degeneration of white matter in children. This enzyme binds zinc which is necessary for activity. Measurement of elevated NAA levels in urine is used in the diagnosis of CD.
Probab=27.88 E-value=83 Score=31.95 Aligned_cols=44 Identities=9% Similarity=0.089 Sum_probs=26.7
Q ss_pred cCCCeeCC-CCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEE
Q 010531 141 KEGDKVSP-GEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (508)
Q Consensus 141 ~~Gd~V~~-gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~ 192 (508)
..|+.|.+ |++|++.. .-++.+|++|.+. +-+.. .+.+|+...+
T Consensus 227 ~~~~~~~~~G~~la~~~----~~~~~ap~~g~vl---~~p~~-~~~~G~~~~~ 271 (272)
T cd06910 227 RGGETIPRAGTVIAHDG----GEPIRTPYDDCVL---IMPSL-RPLRGQTAVR 271 (272)
T ss_pred CCcceeccCCcEEEEeC----CeEEeCCCCCEEE---EccCC-CCCCCceeee
Confidence 45677777 77777732 2667777777653 23443 4557766543
No 259
>TIGR02876 spore_yqfD sporulation protein YqfD. YqfD is part of the sigma-E regulon in the sporulation program of endospore-forming Gram-positive bacteria. Mutation results in a sporulation defect in Bacillus subtilis. Members are found in all currently known endospore-forming bacteria, including the genera Bacillus, Symbiobacterium, Carboxydothermus, Clostridium, and Thermoanaerobacter.
Probab=27.18 E-value=98 Score=33.26 Aligned_cols=47 Identities=21% Similarity=0.193 Sum_probs=0.0
Q ss_pred EccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeee
Q 010531 139 LKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIK 185 (508)
Q Consensus 139 ~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~ 185 (508)
.|++||.|++||+|..=.-.+-.-...-..+|.|..-..-+.+.+++
T Consensus 208 ~Vk~GD~VkkGqvLIsG~i~~~~~~~~v~A~g~V~a~t~ye~~~~vp 254 (382)
T TIGR02876 208 VVKKGDVVKKGDLLISGILGKEGKTYTVHAEGEVFARTWYEKTVEVP 254 (382)
T ss_pred EEccCCEEcCCCEEEEeEeCCCCceEEEccceEEEEEEEEEEEEEEe
No 260
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0016763 transferase activity, transferring pentosyl groups; PDB: 3L0G_B 1QAP_A 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 2I14_C 1X1O_B 2B7Q_B ....
Probab=27.16 E-value=1.2e+02 Score=25.42 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=24.9
Q ss_pred ceeeEEecCCCeEE----------------EEEEecCCCeeeecCCEEEEEe
Q 010531 159 KATVEMECMEEGYL----------------AKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 159 Ka~~ei~ap~~G~v----------------~~i~~~eG~~~v~vG~~la~i~ 194 (508)
+++..+-+..+|+| .++++++|+ .|..|++|+.+.
T Consensus 17 ~~~a~i~are~gV~aG~~~~~~i~~~l~~~v~~~~~dG~-~v~~g~~i~~i~ 67 (88)
T PF02749_consen 17 TGTATIIAREDGVLAGLEEAEEIFEKLGLEVEWLVKDGD-RVEPGDVILEIE 67 (88)
T ss_dssp EEEEEEEESSSEEE-SHHHHHHHHHHCTEEEEESS-TT--EEETTCEEEEEE
T ss_pred EEEEEEEeCCCEEEECHHHHHHHHhhccEEEEEEeCCCC-CccCCcEEEEEE
Confidence 45556666666665 456889997 999999999874
No 261
>CHL00117 rpoC2 RNA polymerase beta'' subunit; Reviewed
Probab=26.35 E-value=71 Score=39.89 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=31.0
Q ss_pred EEEccCCCeeCCCCeEEEEEe--------cceeeEEecCCCeEE
Q 010531 137 RWLKKEGDKVSPGEVLCEVET--------DKATVEMECMEEGYL 172 (508)
Q Consensus 137 ~W~v~~Gd~V~~gd~L~eVet--------dKa~~ei~ap~~G~v 172 (508)
..+|+.||.|++||+|+|+.. +|+...|-|..+|.|
T Consensus 405 ~l~v~~g~~V~~~q~iae~~~~~~~~~~~e~~~~~i~s~~~G~v 448 (1364)
T CHL00117 405 LLLVQNDQYVESEQVIAEIRAGTSTLNFKEKVRKHIYSDSEGEM 448 (1364)
T ss_pred EEEEeCcCEEcCCCEEEEECCCCcccccccccceeEEEcCCcEE
Confidence 468999999999999999984 566678999999985
No 262
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=25.98 E-value=74 Score=33.92 Aligned_cols=23 Identities=30% Similarity=0.449 Sum_probs=18.6
Q ss_pred EEEEEccCCCeeCCCCeEEEEEe
Q 010531 135 IARWLKKEGDKVSPGEVLCEVET 157 (508)
Q Consensus 135 I~~W~v~~Gd~V~~gd~L~eVet 157 (508)
+..|.+++|+.|..||+|++||-
T Consensus 72 ~~i~a~~eG~~v~~gepvl~i~G 94 (352)
T PRK07188 72 LKIRYLKDGDIINPFETVLEIEG 94 (352)
T ss_pred eEEEEcCCCCEecCCCEEEEEEE
Confidence 45788888888888888888874
No 263
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain
Probab=25.70 E-value=1.1e+02 Score=26.57 Aligned_cols=47 Identities=23% Similarity=0.268 Sum_probs=30.9
Q ss_pred eeCCCCeEEEEEe-cceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 145 KVSPGEVLCEVET-DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 145 ~V~~gd~L~eVet-dKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
....+.+|-++.. +++.+.+ ....|.-.+.++++|| .|..||.|+..
T Consensus 14 ~~s~~~~i~~~~~p~~v~ipL-~qh~G~~~~p~V~~Gd-~V~~GQ~Ia~~ 61 (101)
T PF13375_consen 14 ELSKDKPIEEAPLPKKVVIPL-RQHIGAPAEPVVKVGD-KVKKGQLIAEA 61 (101)
T ss_pred ccccCCCeEECCCcCEEEEEC-cccCCCcceEEEcCCC-EEcCCCEEEec
Confidence 3445555555543 3344433 3445666778999997 99999999874
No 264
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=25.61 E-value=66 Score=33.41 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=19.6
Q ss_pred EEEEEEEc--cCCCeeCCCCeEEEEE
Q 010531 133 GNIARWLK--KEGDKVSPGEVLCEVE 156 (508)
Q Consensus 133 g~I~~W~v--~~Gd~V~~gd~L~eVe 156 (508)
..-..|++ ++|+.|++||+|++++
T Consensus 70 ~~~~~~~~~~~dG~~v~~G~~i~~v~ 95 (290)
T PRK06559 70 EVTFQNPHQFKDGDRLTSGDLVLEII 95 (290)
T ss_pred cEEEEEeecCCCCCEecCCCEEEEEE
Confidence 34457888 9999999999998887
No 265
>PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional
Probab=24.75 E-value=57 Score=32.55 Aligned_cols=71 Identities=15% Similarity=0.252 Sum_probs=53.0
Q ss_pred EEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEec-----cee----------eEEecCCCeEEEEEEecCCCeee
Q 010531 120 EIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETD-----KAT----------VEMECMEEGYLAKIVKGDGSKEI 184 (508)
Q Consensus 120 ~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetd-----Ka~----------~ei~ap~~G~v~~i~~~eG~~~v 184 (508)
.+....+||+++---+.+--+-+||.+.-|+.+++|--- |.. .-.+.-..|+..+++ ++| .|
T Consensus 78 ~l~~G~fGENLtv~Gl~e~~v~IGD~~riG~avleVsqpR~PC~kl~~r~~~~~~~~~~~~~g~~G~Y~RVL-~~G--~V 154 (223)
T PRK11536 78 LFVAPAFGENLSTDGLTESNVFIGDIFRWGEALIQVTQPRSPCYKLNYHFDISDIAQLMQNSGKCGWLYRVI-APG--KV 154 (223)
T ss_pred ccCCCCccCCEEecCcChhhCCccCEEEECCEEEEEecCCCCCCchhhhccchhHHHHHHhhCCcEEEEEEE-CCc--EE
Confidence 355568999987656777888999999999999888641 211 113345679998875 888 49
Q ss_pred ecCCEEEEE
Q 010531 185 KVGEVIAIT 193 (508)
Q Consensus 185 ~vG~~la~i 193 (508)
.+|+.|-.+
T Consensus 155 ~~GD~v~l~ 163 (223)
T PRK11536 155 SADAPLELV 163 (223)
T ss_pred cCCCEEEEE
Confidence 999999776
No 266
>PF03869 Arc: Arc-like DNA binding domain; InterPro: IPR005569 Arc repressor act by the cooperative binding of two Arc repressor dimers to a 21-base-pair operator site. Each Arc dimer uses an antiparallel beta-sheet to recognise bases in the major groove [].; GO: 0003677 DNA binding; PDB: 3QOQ_D 1MNT_B 1QTG_B 1BDV_A 1PAR_C 1BDT_C 1ARR_B 1MYL_F 1MYK_A 1NLA_B ....
Probab=24.66 E-value=3.1e+02 Score=20.71 Aligned_cols=49 Identities=20% Similarity=0.269 Sum_probs=33.4
Q ss_pred CCcceEEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCc
Q 010531 338 QTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNS 395 (508)
Q Consensus 338 ~~iP~~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNa 395 (508)
.+.|+|++..+.++-..++.+... +| -|++.-|+.++..+|++...+++
T Consensus 2 r~~~~f~lRlP~~l~~~lk~~A~~-------~g--RS~NsEIv~~L~~~l~~e~~i~~ 50 (50)
T PF03869_consen 2 RKDPQFNLRLPEELKEKLKERAEE-------NG--RSMNSEIVQRLEEALKKEGRIQA 50 (50)
T ss_dssp CCSEEEEEECEHHHHHHHHHHHHH-------TT--S-HHHHHHHHHHHHHHHCTSSCT
T ss_pred CCCCceeeECCHHHHHHHHHHHHH-------hC--CChHHHHHHHHHHHHhccccCCC
Confidence 356888888886544444433332 23 58999999999999998877653
No 267
>PRK02259 aspartoacylase; Provisional
Probab=22.43 E-value=43 Score=34.39 Aligned_cols=49 Identities=16% Similarity=0.163 Sum_probs=37.2
Q ss_pred EccCC--CeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEE
Q 010531 139 LKKEG--DKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIA 191 (508)
Q Consensus 139 ~v~~G--d~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la 191 (508)
.++.| +.|++||+|+.. .|--++.++++.+|+.. +..|.. .+..|..++
T Consensus 231 ~v~~~d~~~v~~G~~lf~~-~~g~~~~~~~~~~~~pv--fine~a-y~~kg~a~~ 281 (288)
T PRK02259 231 QLQGRDWQPLKPGDPLFLT-FDGKTIFYEGDSTVYPV--FINEAA-YYEKGIAMS 281 (288)
T ss_pred hhcCCCccccCCCCcceec-CCCCEEEecCCCCEEeE--EecHHH-HHhhhhHhh
Confidence 34557 559999999999 78888899999999885 455665 666666654
No 268
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=22.43 E-value=79 Score=28.83 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=28.9
Q ss_pred hhHHHHHHHcCCCCCcccccCCCCccchhhHHHHHH
Q 010531 259 PVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294 (508)
Q Consensus 259 P~aRrLA~e~gIDLs~V~GTGp~GRItk~DV~~~~~ 294 (508)
-..+.-|++.|++...|+-+| +.||++||+.|..
T Consensus 48 ~~i~~aa~~aGl~y~~iPV~~--~~iT~~dV~~f~~ 81 (130)
T COG3453 48 AAIAAAAEAAGLTYTHIPVTG--GGITEADVEAFQR 81 (130)
T ss_pred HHHHHHHHhcCCceEEeecCC--CCCCHHHHHHHHH
Confidence 356778999999999999887 5799999998854
No 269
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=22.24 E-value=73 Score=34.73 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=23.6
Q ss_pred CCeEEEEEEEccCCCeeCCCCeEEEEEe
Q 010531 130 MQEGNIARWLKKEGDKVSPGEVLCEVET 157 (508)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~gd~L~eVet 157 (508)
|.-+.=+..+++.||.|++||+|+.|=+
T Consensus 373 iD~~aGi~l~kk~ge~Vk~Gd~l~tiya 400 (435)
T COG0213 373 IDKGAGIYLHKKLGEKVKKGDPLATIYA 400 (435)
T ss_pred cCcccceEEEecCCCeeccCCeEEEEec
Confidence 4556667899999999999999998765
No 270
>PTZ00403 phosphatidylserine decarboxylase; Provisional
Probab=21.62 E-value=1.1e+02 Score=32.60 Aligned_cols=59 Identities=15% Similarity=0.149 Sum_probs=42.2
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEecceeeE-EecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVE-MECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~e-i~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
++.+..|.-..+..|++||.+...+-.-+.+- ++++. .+ +..+++|+ .|++||.|+.+.
T Consensus 280 ~~~~~~~~y~~~~~v~KGeElG~F~~GSTVVllFe~~~--~~-~~~l~~g~-~Vr~Gq~lg~~~ 339 (353)
T PTZ00403 280 GGDINTKIYDSYKSVEVGDEVGEFRMGSSIVVIFENKK--NF-SWNVKPNQ-TVSVGQRLGGVG 339 (353)
T ss_pred CCcceeeecCCCCcccccceeeEeccCCeEEEEEeCCC--cC-CcccCCCC-EEEeeeeccccC
Confidence 34455676777789999999999997444433 45554 23 34578997 899999998763
No 271
>PRK10871 nlpD lipoprotein NlpD; Provisional
Probab=21.53 E-value=51 Score=34.65 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=14.3
Q ss_pred EEEecCCCeeeecCCEEEEEeccC
Q 010531 174 KIVKGDGSKEIKVGEVIAITVEEE 197 (508)
Q Consensus 174 ~i~~~eG~~~v~vG~~la~i~~~~ 197 (508)
++++++|+ .|+.||.|+.+...+
T Consensus 271 ~i~Vk~Gq-~V~~Gq~Ig~~G~tg 293 (319)
T PRK10871 271 TMLVREQQ-EVKAGQKIATMGSTG 293 (319)
T ss_pred ccccCCcC-EECCCCeEEeEcCCC
Confidence 35566675 677777777665443
No 272
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=21.42 E-value=91 Score=31.47 Aligned_cols=25 Identities=36% Similarity=0.517 Sum_probs=21.5
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEE
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVe 156 (508)
.+.+..|.+++|+.|..||++++||
T Consensus 48 ~~~~~~~~~~eG~~v~~g~~vl~i~ 72 (281)
T cd00516 48 PGPLVILAVPEGTVVEPGEPLLTIE 72 (281)
T ss_pred CCceEEEECCCCCEecCCCEEEEEE
Confidence 3566789999999999999999888
No 273
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=21.38 E-value=64 Score=28.85 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=24.3
Q ss_pred cChhHHHHHHHcCCCCCcccccCCCCccchhhHHHH
Q 010531 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDY 292 (508)
Q Consensus 257 aSP~aRrLA~e~gIDLs~V~GTGp~GRItk~DV~~~ 292 (508)
..|.|.++++++|||++.. .+ .|+.+|++.+
T Consensus 42 ~~~~a~~~l~~~Gid~~~~---~~--~l~~~~~~~~ 72 (140)
T smart00226 42 ADPRAVEVLKEHGIALSHH---AS--QLTSSDFKNA 72 (140)
T ss_pred CCHHHHHHHHHcCcCccce---ec--cCCHHHHHhC
Confidence 6899999999999998642 22 7888887654
No 274
>COG2258 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.00 E-value=1.1e+02 Score=30.47 Aligned_cols=70 Identities=16% Similarity=0.321 Sum_probs=52.4
Q ss_pred EecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEec---------cee-----eE-EecCCCeEEEEEEecCCCeeee
Q 010531 121 IGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETD---------KAT-----VE-MECMEEGYLAKIVKGDGSKEIK 185 (508)
Q Consensus 121 i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetd---------Ka~-----~e-i~ap~~G~v~~i~~~eG~~~v~ 185 (508)
+.-+.+||+++--=|.+-.+..||.+.-||.|.||--- +.. .. -++-..|+..+++ ++| .|.
T Consensus 76 l~pg~fGENltt~Gl~e~~l~iGdr~riG~allEVSqpR~PC~~l~~~~~~~~~~~~~~~~G~~G~y~RVL-~~G--~v~ 152 (210)
T COG2258 76 LQPGAFGENLTTSGLDEANLCIGDRFRIGEALLEVTQPRKPCSKLNKRFGIPDLAKRFQQTGRTGWYARVL-EEG--KVR 152 (210)
T ss_pred CCcccccCceeecCcchhhccccCEEEeccEEEEecCCCCchHHHHHhcCCccHHHHhhccCcccEEEEEc-ccc--eec
Confidence 44567999988777888889999999999999999641 110 01 2344568888775 788 499
Q ss_pred cCCEEEEE
Q 010531 186 VGEVIAIT 193 (508)
Q Consensus 186 vG~~la~i 193 (508)
+|++|-.+
T Consensus 153 ~gD~l~l~ 160 (210)
T COG2258 153 AGDPLKLI 160 (210)
T ss_pred CCCceEEe
Confidence 99999775
No 275
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=20.81 E-value=1.2e+02 Score=38.19 Aligned_cols=50 Identities=18% Similarity=0.320 Sum_probs=41.0
Q ss_pred CCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 143 GDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 143 Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
|-.+.-|--.|..|-+-=..-+.||..|.+.+++++.|+ -|.+|++-|.+
T Consensus 667 ~~rltIdn~t~~fe~enDpt~LrsPs~GKLl~ylVedG~-hv~~Gq~YAei 716 (2196)
T KOG0368|consen 667 GYRLTIDNNTCLFEKENDPTVLRSPSPGKLLQYLVEDGE-HVEAGQPYAEI 716 (2196)
T ss_pred eEEEEECCeEEEEecCCCcceecCCCCccceEEEecCCC-ceecCCeeeeh
Confidence 445666777777776666666999999999999999997 89999998765
No 276
>KOG1668 consensus Elongation factor 1 beta/delta chain [Transcription]
Probab=20.57 E-value=53 Score=32.94 Aligned_cols=27 Identities=26% Similarity=0.398 Sum_probs=25.7
Q ss_pred EEEccCCCeeCCCCeEEEEEecceeeE
Q 010531 137 RWLKKEGDKVSPGEVLCEVETDKATVE 163 (508)
Q Consensus 137 ~W~v~~Gd~V~~gd~L~eVetdKa~~e 163 (508)
.|++.+|..+++=+..|.||.||+.++
T Consensus 181 sklvpvGygikKlqi~~vveddkvs~D 207 (231)
T KOG1668|consen 181 SKLVPVGYGIKKLQIQCVVEDDKVSID 207 (231)
T ss_pred ccccccccceeeEEEEEEEEcCccccc
Confidence 599999999999999999999999987
Done!