Query 010531
Match_columns 508
No_of_seqs 252 out of 2067
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 08:48:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010531.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010531hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dva_I Dihydrolipoyllysine-res 100.0 7.6E-75 2.6E-79 615.1 1.2 360 119-493 3-374 (428)
2 3mae_A 2-oxoisovalerate dehydr 100.0 6.3E-42 2.1E-46 340.4 14.7 180 316-500 17-202 (256)
3 1scz_A E2, dihydrolipoamide su 100.0 3.3E-41 1.1E-45 331.2 15.5 173 317-493 4-179 (233)
4 3l60_A Branched-chain alpha-ke 100.0 1.1E-40 3.6E-45 330.5 15.9 170 321-500 18-197 (250)
5 3rqc_A Probable lipoamide acyl 100.0 3.3E-40 1.1E-44 322.3 14.9 168 316-492 5-177 (224)
6 1dpb_A Dihydrolipoyl-transacet 100.0 6.4E-40 2.2E-44 323.9 15.8 172 317-493 15-191 (243)
7 3b8k_A PDCE2;, dihydrolipoylly 100.0 4.7E-40 1.6E-44 324.1 12.7 176 316-497 11-192 (239)
8 2ii3_A Lipoamide acyltransfera 100.0 2.4E-39 8.2E-44 323.0 15.2 175 316-496 30-212 (262)
9 1zy8_K Pyruvate dehydrogenase 100.0 1.3E-31 4.4E-36 262.2 4.5 167 118-296 3-170 (229)
10 2xt6_A 2-oxoglutarate decarbox 100.0 3.3E-30 1.1E-34 299.3 14.1 157 332-493 1-169 (1113)
11 3cla_A Type III chloramphenico 100.0 4.6E-29 1.6E-33 241.8 14.7 139 338-488 23-172 (213)
12 1q23_A Chloramphenicol acetylt 100.0 2.4E-28 8.2E-33 237.7 15.2 145 326-488 18-176 (219)
13 2i9d_A Chloramphenicol acetylt 99.9 2.1E-27 7.2E-32 230.8 13.3 139 338-488 25-180 (217)
14 1y8o_B Dihydrolipoyllysine-res 99.8 7.9E-20 2.7E-24 163.7 12.2 99 105-203 14-112 (128)
15 2dne_A Dihydrolipoyllysine-res 99.8 1.4E-19 4.6E-24 157.6 9.5 92 113-204 2-93 (108)
16 3crk_C Dihydrolipoyllysine-res 99.8 1.6E-18 5.6E-23 144.5 11.5 83 115-197 2-84 (87)
17 2dnc_A Pyruvate dehydrogenase 99.8 3.3E-18 1.1E-22 146.3 10.8 82 116-198 5-87 (98)
18 1k8m_A E2 component of branche 99.7 1.4E-17 4.6E-22 141.0 10.0 78 117-195 3-80 (93)
19 1ghj_A E2, E2, the dihydrolipo 99.7 7.3E-17 2.5E-21 131.7 8.6 75 119-194 2-76 (79)
20 1pmr_A Dihydrolipoyl succinylt 99.6 1.9E-17 6.3E-22 135.8 -1.3 75 119-194 3-77 (80)
21 2l5t_A Lipoamide acyltransfera 99.6 7.2E-16 2.4E-20 125.1 7.9 75 119-194 2-76 (77)
22 1qjo_A Dihydrolipoamide acetyl 99.6 8.5E-16 2.9E-20 125.4 8.2 74 119-195 3-76 (80)
23 1iyu_A E2P, dihydrolipoamide a 99.6 5.6E-15 1.9E-19 120.5 9.8 73 119-195 2-74 (79)
24 1gjx_A Pyruvate dehydrogenase; 99.6 1.9E-15 6.3E-20 123.8 4.3 76 118-195 2-77 (81)
25 2k7v_A Dihydrolipoyllysine-res 99.4 5.6E-14 1.9E-18 116.4 1.2 71 119-196 3-73 (85)
26 1z6h_A Biotin/lipoyl attachmen 99.3 5.3E-12 1.8E-16 100.4 8.8 64 131-195 6-69 (72)
27 2kcc_A Acetyl-COA carboxylase 99.3 2E-12 6.9E-17 106.9 5.9 64 130-195 11-74 (84)
28 2jku_A Propionyl-COA carboxyla 99.3 9.7E-13 3.3E-17 111.2 3.2 79 114-193 11-93 (94)
29 2dn8_A Acetyl-COA carboxylase 99.2 1.8E-11 6.3E-16 104.3 8.5 63 131-195 24-86 (100)
30 2eq9_C Pyruvate dehydrogenase 99.2 5E-12 1.7E-16 91.0 3.7 40 255-294 1-40 (41)
31 3rnm_E Lipoamide acyltransfera 99.2 4E-12 1.4E-16 98.4 3.2 44 253-296 6-49 (58)
32 2d5d_A Methylmalonyl-COA decar 99.2 7.2E-11 2.5E-15 94.0 9.2 62 131-193 12-73 (74)
33 2eq8_C Pyruvate dehydrogenase 99.2 1.4E-11 4.7E-16 88.2 3.6 37 257-293 2-38 (40)
34 1dcz_A Transcarboxylase 1.3S s 99.1 9.3E-11 3.2E-15 94.4 8.4 62 131-193 15-76 (77)
35 1bdo_A Acetyl-COA carboxylase; 99.1 4.9E-11 1.7E-15 97.1 6.8 56 137-193 24-79 (80)
36 2eq7_C 2-oxoglutarate dehydrog 99.1 9.5E-12 3.2E-16 89.0 2.2 37 257-293 2-38 (40)
37 2ejm_A Methylcrotonoyl-COA car 99.1 7.2E-11 2.5E-15 100.5 7.1 66 131-197 21-86 (99)
38 1w85_I Dihydrolipoyllysine-res 99.1 2.6E-11 9E-16 90.6 3.2 41 254-294 6-46 (49)
39 1bal_A Dihydrolipoamide succin 99.1 2.3E-11 7.9E-16 91.8 2.0 40 254-293 9-48 (51)
40 3va7_A KLLA0E08119P; carboxyla 99.0 2.8E-10 9.7E-15 134.1 8.9 61 132-193 1175-1235(1236)
41 3n6r_A Propionyl-COA carboxyla 99.0 3.1E-10 1.1E-14 126.7 8.8 62 131-193 619-680 (681)
42 1w4i_A Pyruvate dehydrogenase 99.0 1.4E-10 4.8E-15 91.0 4.1 44 254-297 4-47 (62)
43 2f60_K Pyruvate dehydrogenase 99.0 7.7E-11 2.6E-15 93.0 2.6 43 253-295 8-50 (64)
44 2coo_A Lipoamide acyltransfera 99.0 2.6E-10 9.1E-15 91.5 5.6 43 254-296 15-57 (70)
45 3u9t_A MCC alpha, methylcroton 98.9 7.9E-11 2.7E-15 131.4 0.0 63 131-194 609-671 (675)
46 3hbl_A Pyruvate carboxylase; T 98.9 8.7E-10 3E-14 129.4 8.5 63 131-194 1084-1146(1150)
47 2k32_A A; NMR {Campylobacter j 98.7 1.1E-08 3.9E-13 88.7 5.3 66 131-197 8-103 (116)
48 3bg3_A Pyruvate carboxylase, m 98.6 7.2E-09 2.5E-13 116.0 2.8 62 131-193 656-717 (718)
49 2qf7_A Pyruvate carboxylase pr 98.6 1.9E-08 6.4E-13 118.3 5.1 62 131-193 1102-1163(1165)
50 1zko_A Glycine cleavage system 98.5 8.4E-08 2.9E-12 86.5 6.0 55 140-195 53-114 (136)
51 1hpc_A H protein of the glycin 98.1 1.1E-06 3.7E-11 78.8 3.7 54 121-180 30-84 (131)
52 3a7l_A H-protein, glycine clea 98.1 2.3E-06 8E-11 76.3 5.6 55 121-180 31-85 (128)
53 1onl_A Glycine cleavage system 98.1 3.4E-06 1.2E-10 75.2 5.7 68 121-194 30-104 (128)
54 3ne5_B Cation efflux system pr 97.7 4.7E-05 1.6E-09 79.8 7.2 65 131-196 128-241 (413)
55 3lnn_A Membrane fusion protein 97.7 4E-05 1.4E-09 78.0 6.3 65 131-196 64-205 (359)
56 2f1m_A Acriflavine resistance 97.6 1.4E-05 4.6E-10 78.7 2.1 65 131-196 29-166 (277)
57 3fpp_A Macrolide-specific effl 97.6 4.8E-05 1.6E-09 76.9 5.5 65 131-196 38-190 (341)
58 3klr_A Glycine cleavage system 97.5 0.00015 5E-09 64.4 6.4 47 133-179 32-79 (125)
59 3mxu_A Glycine cleavage system 97.4 0.00026 9E-09 64.0 6.4 46 133-178 54-100 (143)
60 3tzu_A GCVH, glycine cleavage 97.3 0.00028 9.5E-09 63.5 5.8 44 133-176 49-93 (137)
61 1vf7_A Multidrug resistance pr 97.3 7.3E-05 2.5E-09 77.0 2.2 65 131-196 50-173 (369)
62 3hgb_A Glycine cleavage system 97.0 0.00085 2.9E-08 61.4 5.7 36 141-176 68-103 (155)
63 4dk0_A Putative MACA; alpha-ha 96.7 8E-05 2.7E-09 76.0 -4.0 63 131-194 39-189 (369)
64 3na6_A Succinylglutamate desuc 96.4 0.0086 2.9E-07 61.1 8.8 61 133-196 265-329 (331)
65 3cdx_A Succinylglutamatedesucc 96.1 0.015 5E-07 59.8 8.9 59 135-196 277-339 (354)
66 3fmc_A Putative succinylglutam 96.0 0.015 5.3E-07 60.1 8.8 60 133-195 298-363 (368)
67 2dn8_A Acetyl-COA carboxylase 95.6 0.0045 1.5E-07 52.1 2.0 46 149-195 5-50 (100)
68 1z6h_A Biotin/lipoyl attachmen 94.7 0.028 9.7E-07 43.5 4.3 32 163-195 1-32 (72)
69 1dcz_A Transcarboxylase 1.3S s 94.7 0.033 1.1E-06 43.8 4.5 34 161-195 8-41 (77)
70 2d5d_A Methylmalonyl-COA decar 94.5 0.045 1.5E-06 42.5 4.9 33 162-195 6-38 (74)
71 2qj8_A MLR6093 protein; struct 94.2 0.12 4.1E-06 52.4 8.5 60 133-195 265-328 (332)
72 2k32_A A; NMR {Campylobacter j 94.1 0.049 1.7E-06 46.4 4.6 33 162-195 2-34 (116)
73 2kcc_A Acetyl-COA carboxylase 93.0 0.052 1.8E-06 44.0 2.8 34 161-195 5-38 (84)
74 1f3z_A EIIA-GLC, glucose-speci 92.3 0.12 4E-06 47.6 4.5 58 131-193 19-115 (161)
75 2f1m_A Acriflavine resistance 91.9 0.13 4.5E-06 50.0 4.7 52 141-194 3-54 (277)
76 2xha_A NUSG, transcription ant 91.5 0.14 4.8E-06 48.3 4.1 32 137-174 22-53 (193)
77 3d4r_A Domain of unknown funct 91.1 0.3 1E-05 44.9 5.8 48 131-178 107-155 (169)
78 2ejm_A Methylcrotonoyl-COA car 91.1 0.15 5.2E-06 42.5 3.6 34 161-195 14-47 (99)
79 2gpr_A Glucose-permease IIA co 90.7 0.18 6E-06 46.1 3.9 58 131-193 14-110 (154)
80 2jku_A Propionyl-COA carboxyla 90.6 0.1 3.5E-06 43.2 2.1 34 161-195 25-58 (94)
81 3lnn_A Membrane fusion protein 90.6 0.16 5.4E-06 51.2 3.9 54 141-195 36-90 (359)
82 1bdo_A Acetyl-COA carboxylase; 90.4 0.17 5.9E-06 40.0 3.2 33 162-195 5-44 (80)
83 1ax3_A Iiaglc, glucose permeas 90.2 0.15 5.2E-06 46.9 3.0 59 130-193 18-115 (162)
84 2l5t_A Lipoamide acyltransfera 90.1 0.24 8.3E-06 38.9 3.8 27 131-157 51-77 (77)
85 3fpp_A Macrolide-specific effl 89.6 0.31 1.1E-05 48.7 5.0 54 140-195 11-64 (341)
86 2xhc_A Transcription antitermi 87.4 0.44 1.5E-05 49.0 4.5 32 137-174 62-93 (352)
87 1ghj_A E2, E2, the dihydrolipo 87.1 0.4 1.4E-05 37.8 3.2 27 131-157 51-77 (79)
88 3ne5_B Cation efflux system pr 87.0 0.49 1.7E-05 49.2 4.7 53 141-194 100-154 (413)
89 1qjo_A Dihydrolipoamide acetyl 86.2 0.38 1.3E-05 37.9 2.6 28 131-158 50-77 (80)
90 3crk_C Dihydrolipoyllysine-res 85.6 0.47 1.6E-05 38.4 2.9 29 131-159 55-84 (87)
91 1k8m_A E2 component of branche 85.4 0.68 2.3E-05 38.1 3.8 28 131-158 54-81 (93)
92 1vf7_A Multidrug resistance pr 85.2 0.48 1.6E-05 48.3 3.4 52 141-194 24-75 (369)
93 1iyu_A E2P, dihydrolipoamide a 84.7 0.57 1.9E-05 36.9 2.9 27 132-158 49-75 (79)
94 1gjx_A Pyruvate dehydrogenase; 84.1 0.58 2E-05 37.0 2.8 31 164-195 10-40 (81)
95 2k7v_A Dihydrolipoyllysine-res 80.8 0.63 2.1E-05 37.4 1.8 28 131-158 46-73 (85)
96 2auk_A DNA-directed RNA polyme 80.6 1.5 5.1E-05 41.1 4.5 42 137-180 63-104 (190)
97 2dnc_A Pyruvate dehydrogenase 80.3 0.85 2.9E-05 38.0 2.5 29 131-159 57-86 (98)
98 2dne_A Dihydrolipoyllysine-res 79.8 0.92 3.2E-05 38.5 2.6 28 167-195 19-46 (108)
99 1y8o_B Dihydrolipoyllysine-res 79.4 1.2 4.2E-05 39.1 3.3 28 131-158 77-105 (128)
100 3n6r_A Propionyl-COA carboxyla 78.4 1.7 5.9E-05 48.3 4.9 35 161-196 612-646 (681)
101 4dk0_A Putative MACA; alpha-ha 78.3 0.44 1.5E-05 48.0 0.1 53 141-195 13-65 (369)
102 2xha_A NUSG, transcription ant 75.5 0.86 2.9E-05 43.0 1.2 45 140-191 85-157 (193)
103 3our_B EIIA, phosphotransferas 72.6 5.1 0.00017 37.4 5.7 17 176-193 121-137 (183)
104 2bco_A Succinylglutamate desuc 72.0 3.4 0.00012 42.0 4.8 50 139-196 280-329 (350)
105 3hbl_A Pyruvate carboxylase; T 70.8 3.3 0.00011 48.8 4.9 34 162-196 1078-1111(1150)
106 1pmr_A Dihydrolipoyl succinylt 70.5 0.55 1.9E-05 37.2 -1.3 27 131-157 52-78 (80)
107 3va7_A KLLA0E08119P; carboxyla 68.9 3.6 0.00012 48.9 4.7 35 161-196 1167-1201(1236)
108 3bg3_A Pyruvate carboxylase, m 67.6 2.8 9.6E-05 46.9 3.3 33 162-195 650-682 (718)
109 3lu0_D DNA-directed RNA polyme 63.1 4.6 0.00016 48.0 3.9 35 137-173 1002-1036(1407)
110 2qf7_A Pyruvate carboxylase pr 62.0 5 0.00017 47.4 4.1 33 162-195 1096-1128(1165)
111 3u9t_A MCC alpha, methylcroton 61.8 1.7 5.7E-05 48.3 0.0 33 162-195 603-635 (675)
112 3our_B EIIA, phosphotransferas 59.4 3 0.0001 39.0 1.3 28 132-159 114-141 (183)
113 3dva_I Dihydrolipoyllysine-res 58.7 2 6.9E-05 45.1 0.0 31 130-160 51-81 (428)
114 1brw_A PYNP, protein (pyrimidi 54.9 13 0.00045 39.0 5.5 43 155-198 329-402 (433)
115 3h5q_A PYNP, pyrimidine-nucleo 53.9 14 0.00047 39.0 5.3 39 156-195 333-402 (436)
116 2dsj_A Pyrimidine-nucleoside ( 53.3 13 0.00045 39.0 5.1 42 155-198 322-394 (423)
117 1qpo_A Quinolinate acid phosph 51.7 9.5 0.00032 37.8 3.6 23 134-156 71-93 (284)
118 2gpr_A Glucose-permease IIA co 50.5 5.2 0.00018 36.3 1.3 38 120-158 74-113 (154)
119 2b7n_A Probable nicotinate-nuc 49.6 11 0.00037 37.0 3.6 21 136-156 60-80 (273)
120 1x1o_A Nicotinate-nucleotide p 49.2 9.2 0.00031 38.0 3.0 21 136-156 74-94 (286)
121 1zy8_K Pyruvate dehydrogenase 49.0 3.6 0.00012 39.6 0.0 29 166-195 14-42 (229)
122 3tqv_A Nicotinate-nucleotide p 48.3 9.7 0.00033 37.9 3.0 21 136-156 77-97 (287)
123 3l0g_A Nicotinate-nucleotide p 47.3 11 0.00036 37.9 3.1 21 136-156 86-106 (300)
124 3fmc_A Putative succinylglutam 47.0 13 0.00044 38.1 3.8 35 159-195 288-322 (368)
125 3gnn_A Nicotinate-nucleotide p 46.3 11 0.00037 37.8 3.0 21 136-156 88-108 (298)
126 1f3z_A EIIA-GLC, glucose-speci 46.0 6.6 0.00023 35.8 1.3 38 120-158 79-118 (161)
127 1o4u_A Type II quinolic acid p 45.7 8.7 0.0003 38.2 2.2 21 136-156 73-93 (285)
128 3paj_A Nicotinate-nucleotide p 45.2 11 0.00039 38.0 3.0 22 135-156 109-130 (320)
129 1qap_A Quinolinic acid phospho 45.0 12 0.0004 37.4 3.0 22 135-156 86-107 (296)
130 2tpt_A Thymidine phosphorylase 44.6 13 0.00046 39.1 3.5 42 155-197 334-406 (440)
131 1uou_A Thymidine phosphorylase 41.3 31 0.001 36.7 5.7 43 155-198 366-437 (474)
132 3d4r_A Domain of unknown funct 40.9 21 0.0007 32.8 3.7 43 146-200 96-138 (169)
133 3na6_A Succinylglutamate desuc 40.8 19 0.00065 36.2 3.8 36 159-196 255-290 (331)
134 2jbm_A Nicotinate-nucleotide p 40.1 13 0.00044 37.1 2.4 21 136-156 73-93 (299)
135 1ax3_A Iiaglc, glucose permeas 39.4 11 0.00036 34.5 1.5 39 120-159 79-119 (162)
136 1brw_A PYNP, protein (pyrimidi 38.3 18 0.00062 38.0 3.3 30 130-159 372-401 (433)
137 2dsj_A Pyrimidine-nucleoside ( 38.0 18 0.00062 37.9 3.3 30 130-159 364-393 (423)
138 3h5q_A PYNP, pyrimidine-nucleo 37.7 16 0.00053 38.6 2.7 31 129-159 374-404 (436)
139 1uou_A Thymidine phosphorylase 36.0 21 0.00073 37.9 3.5 27 133-159 410-436 (474)
140 2xhc_A Transcription antitermi 33.7 50 0.0017 33.7 5.6 14 140-153 125-138 (352)
141 3it5_A Protease LASA; metallop 32.1 17 0.00059 33.5 1.7 19 138-156 85-103 (182)
142 3cdx_A Succinylglutamatedesucc 31.1 39 0.0013 34.1 4.3 39 156-196 262-300 (354)
143 3it5_A Protease LASA; metallop 29.7 50 0.0017 30.3 4.5 63 118-195 34-104 (182)
144 3vr4_A V-type sodium ATPase ca 28.6 55 0.0019 35.8 5.1 52 140-195 131-185 (600)
145 3c2e_A Nicotinate-nucleotide p 27.1 24 0.00081 35.1 1.8 21 136-156 69-95 (294)
146 1zko_A Glycine cleavage system 25.9 47 0.0016 29.2 3.4 31 164-195 39-70 (136)
147 2tpt_A Thymidine phosphorylase 25.8 24 0.00082 37.2 1.7 30 130-159 377-406 (440)
148 3tuf_B Stage II sporulation pr 24.9 30 0.001 33.5 2.1 26 133-158 130-155 (245)
149 4etm_A LMPTP, low molecular we 24.5 39 0.0013 30.7 2.7 32 257-292 68-99 (173)
150 2hsi_A Putative peptidase M23; 24.2 32 0.0011 33.9 2.2 22 175-197 232-253 (282)
151 3mfy_A V-type ATP synthase alp 23.6 96 0.0033 33.8 5.9 53 139-194 123-178 (588)
152 1qwy_A Peptidoglycan hydrolase 23.4 34 0.0012 34.0 2.2 22 175-197 239-260 (291)
153 1hpc_A H protein of the glycin 23.1 56 0.0019 28.5 3.3 29 165-194 31-60 (131)
154 3tuf_B Stage II sporulation pr 21.7 65 0.0022 31.1 3.8 67 119-196 84-155 (245)
155 2qj8_A MLR6093 protein; struct 21.4 71 0.0024 31.7 4.1 34 161-196 257-290 (332)
156 3nyy_A Putative glycyl-glycine 21.4 91 0.0031 30.1 4.8 68 118-196 127-202 (252)
157 2hsi_A Putative peptidase M23; 20.7 72 0.0025 31.4 3.9 14 162-175 191-204 (282)
158 3nyy_A Putative glycyl-glycine 20.3 42 0.0014 32.6 2.1 25 133-157 176-201 (252)
No 1
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=100.00 E-value=7.6e-75 Score=615.14 Aligned_cols=360 Identities=29% Similarity=0.428 Sum_probs=40.0
Q ss_pred eEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEeccCC
Q 010531 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEE 198 (508)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~~ 198 (508)
++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+ .|++|++|+++.++++
T Consensus 3 ~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~-~V~~G~~l~~i~~~~~ 81 (428)
T 3dva_I 3 FEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGT-VATVGQTLITLDAPGY 81 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCC-EeCCCCEEEEEecCCc
Confidence 689999999999999999999999999999999999999999999999999999999999997 9999999999876554
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHHHcCCCCCccccc
Q 010531 199 DIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIKGT 278 (508)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~aRrLA~e~gIDLs~V~GT 278 (508)
+....... +. .. ++.+ +.+.+. +.+...+...+.... .......+.++++||+|||||+|+||||++|+||
T Consensus 82 ~~~~~~~~-~~--~~--~~~~--~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gt 152 (428)
T 3dva_I 82 ENMTFKGQ-EQ--EE--AKKE--EKTETV-SKEEKVDAVAPNAPA-AEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGT 152 (428)
T ss_dssp -------------------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCC
T ss_pred cccccccc-cc--cc--cccC--CCcccC-CccccccCCCccccc-cccccccccccccCHHHHHHHHHcCCCHHHCCCC
Confidence 33211100 00 00 0000 000000 000000000000000 0011112347899999999999999999999999
Q ss_pred CCCCccchhhHHHHHHhcCCCCCCCC--CCC--CCC---CCCCCcccccCCchhhHHHHHhhhhccCCcceEEEeeeecH
Q 010531 279 GPNGLIVKADIEDYLASRGKEVPAKA--PKG--KDV---AAPALDYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICV 351 (508)
Q Consensus 279 Gp~GRItk~DV~~~~~~~~~~~~a~~--~a~--~~~---~~~~~~~~~ipls~iRkaiA~~m~~S~~~iP~~~l~~~vdv 351 (508)
||+|||+++||++|++......+... ++. ... ......++++|+++|||+||++|.+||+++||||++.++|+
T Consensus 153 G~~GrI~k~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evDv 232 (428)
T 3dva_I 153 GKNGRVLKEDIDAFLAGGAKPAPAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADV 232 (428)
T ss_dssp STTSCCCTTTTTTTSCC---------------------------------------------------------------
T ss_pred CCCCceeHHHHHHHhhccccccccccccccccCCCCccccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEEeH
Confidence 99999999999999754321111000 000 000 00111356899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceeeC--CeeEEcCCccEEEEeecCCceEeeeecccc
Q 010531 352 DNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD--EYIRQFKNVNINVAVQTENGLYVPVIRDAD 429 (508)
Q Consensus 352 t~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~~--~~I~~~~~vnIgVAVdt~~GLvvPVIrdAd 429 (508)
|+|+++|+++|+..+ .+|.|+||++|++||+++||++||++|++|++ +.|++|+++|||+||++++||+||||+|++
T Consensus 233 t~l~~~rk~~~~~~~-~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~ 311 (428)
T 3dva_I 233 TKLVAHRKKFKAIAA-EKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHAD 311 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHhhhhHh-hcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeeccCC
Confidence 999999999986543 35899999999999999999999999999988 799999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCccccccccceee---ehhhhcccce
Q 010531 430 KKGLSTIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLSILLNLAFL---QLDLLRKGLS 493 (508)
Q Consensus 430 ~ksL~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fGi~~~~Pil---~~~~~~~g~~ 493 (508)
+++|.+|++++++|++++|+|+|.++||+|||||||| +|+ ||+..|+||+ +.++++.|+-
T Consensus 312 ~~sl~eia~~~~~l~~~ar~gkL~~~e~~ggtftISn---lG~-~G~~~ftpIin~pq~aIl~vG~i 374 (428)
T 3dva_I 312 RKPIFALAQEINELAEKARDGKLTPGEMKGASCTITN---IGS-AGGQWFTPVINHPEVAILGIGRI 374 (428)
T ss_dssp -------------------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEc---CCC-CCccceEeecCCCCceEEEcccc
Confidence 9999999999999999999999999999999999999 999 9999999998 5566666654
No 2
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes}
Probab=100.00 E-value=6.3e-42 Score=340.43 Aligned_cols=180 Identities=30% Similarity=0.456 Sum_probs=166.7
Q ss_pred cccccCCchhhHHHHHhhhhccCCcceEEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCc
Q 010531 316 DYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNS 395 (508)
Q Consensus 316 ~~~~ipls~iRkaiA~~m~~S~~~iP~~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNa 395 (508)
.++++|+++|||+||++|.+|++++||+|++.++|+|+|+++|+++|+.++...|.++|+++|++||++.||++||++|+
T Consensus 17 ~~~~~pl~~~rk~ia~~m~~S~~~iP~~t~~~evDvt~l~~~r~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na 96 (256)
T 3mae_A 17 GDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEVDATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNS 96 (256)
T ss_dssp SCEEEECCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHCTTTSE
T ss_pred CceEEeCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhCHHhhh
Confidence 46789999999999999999999999999999999999999999999765555689999999999999999999999999
Q ss_pred eeeCCeeEEcCCccEEEEeecCCceEeeeecccccCCHHHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCcccc
Q 010531 396 SWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLS 475 (508)
Q Consensus 396 s~~~~~I~~~~~vnIgVAVdt~~GLvvPVIrdAd~ksL~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fG 475 (508)
+|+++.|++++++|||+||++++||+||||+|+++++|.+|++++++|+++||+|+|.++|++|||||||| +|+ ||
T Consensus 97 ~~~~~~i~~~~~vnigiAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISN---lG~-~G 172 (256)
T 3mae_A 97 TWAGDKIIEHANINISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVNS---TGS-FG 172 (256)
T ss_dssp EEETTEEEECSSCCEEECCCCTTSCCCCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCHHHHSCCSEEEEC---GGG-GT
T ss_pred EEecCEEEEcCcEEEEeEEEcCCceEEEEEcCCCCCCHHHHHHHHHHHHHHHhcCCCCchhcCCCEEEEec---CCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 999 99
Q ss_pred ccccceee---ehhhhcccce---eeEEeec
Q 010531 476 ILLNLAFL---QLDLLRKGLS---LAWVQIS 500 (508)
Q Consensus 476 i~~~~Pil---~~~~~~~g~~---~~w~~~~ 500 (508)
+..|+||+ +.++++.|.- | |++++
T Consensus 173 ~~~ftpIInppq~aIL~vG~i~~~p-v~~~g 202 (256)
T 3mae_A 173 SVQSMGIINHPQAAILQVESIVKRP-VIIDD 202 (256)
T ss_dssp CSEEECCCCTTSSEEEEEEEEEEEE-EEETT
T ss_pred ccceEcccCCCCceEEEecccEEEE-EEECC
Confidence 99999998 5556666653 6 54443
No 3
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A
Probab=100.00 E-value=3.3e-41 Score=331.23 Aligned_cols=173 Identities=25% Similarity=0.382 Sum_probs=161.9
Q ss_pred ccccCCchhhHHHHHhhhhccCCcceEEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCce
Q 010531 317 YVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 396 (508)
Q Consensus 317 ~~~ipls~iRkaiA~~m~~S~~~iP~~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas 396 (508)
.+++|+++|||+||++|.+|++++||+|++.++|+|+|+++|+++|+.....+|.++|+++|++||++.||++||++|++
T Consensus 4 ~~~~~~~~~r~~ia~~m~~S~~~~P~~~~~~evdvt~l~~~r~~~k~~~~~~~g~kls~~~~~ikA~~~Al~~~P~~Na~ 83 (233)
T 1scz_A 4 EKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNAS 83 (233)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCE
T ss_pred ceeccCCHHHHHHHHHHHHhccCCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhChHhhEE
Confidence 35689999999999999999999999999999999999999999987555556899999999999999999999999999
Q ss_pred eeCCeeEEcCCccEEEEeecCCceEeeeecccccCCHHHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCccccc
Q 010531 397 WADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLSI 476 (508)
Q Consensus 397 ~~~~~I~~~~~vnIgVAVdt~~GLvvPVIrdAd~ksL~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fGi 476 (508)
|+++.+++++++|||+||++++||+||||+||++++|.+|++++++|+++||+|+|+++||+|||||||| +|+ ||+
T Consensus 84 ~~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISn---lG~-~G~ 159 (233)
T 1scz_A 84 IDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITN---GGV-FGS 159 (233)
T ss_dssp EETTEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEE---GGG-GTC
T ss_pred EeCCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEe---CCC-CCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999 999 999
Q ss_pred cccceee---ehhhhcccce
Q 010531 477 LLNLAFL---QLDLLRKGLS 493 (508)
Q Consensus 477 ~~~~Pil---~~~~~~~g~~ 493 (508)
..++||+ +.++++.|.-
T Consensus 160 ~~~tpIin~pq~aIl~vG~~ 179 (233)
T 1scz_A 160 LMSTPIINPPQSAILGMHAI 179 (233)
T ss_dssp CCCCCCCCTTCSEEEEEEEE
T ss_pred cceEcccCCCCcEEEEcccc
Confidence 9999987 5556555553
No 4
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0
Probab=100.00 E-value=1.1e-40 Score=330.54 Aligned_cols=170 Identities=24% Similarity=0.370 Sum_probs=158.4
Q ss_pred CCchhhHHHHHhhhhccCCcceEEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceeeC-
Q 010531 321 PHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWAD- 399 (508)
Q Consensus 321 pls~iRkaiA~~m~~S~~~iP~~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~~- 399 (508)
|+++|||+||++|.+|++++||+|++.++|+|+|+++|+++|+ .|.|+|+++|++||+++||++||++|++|++
T Consensus 18 pls~~rk~ia~~m~~S~~~iP~~~~~~evDvt~l~~~r~~~k~-----~~~kls~~~~iikAva~AL~~~P~~Na~~~~~ 92 (250)
T 3l60_A 18 PVHGVHARMAEKMTLSHKEIPTAKASVEVICAELLRLRDRFVS-----AAPEITPFALTLRLLVIALKHNVILNSTWVDS 92 (250)
T ss_dssp CCCHHHHHHHHHHHHHHHHCCEEEEEEEEECHHHHHHHHHHTT-----TCTTCCHHHHHHHHHHHHHHHCGGGSEEEECT
T ss_pred CCcHHHHHHHHHHHHHhhcCCeEEEEEEEEHHHHHHHHHHHhh-----cCCCCCHHHHHHHHHHHHHHhCHHhhEEEecc
Confidence 9999999999999999999999999999999999999999974 3789999999999999999999999999985
Q ss_pred ---CeeEEcCCccEEEEeecCCceEeeeecccccCCHHHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCccccc
Q 010531 400 ---EYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLSI 476 (508)
Q Consensus 400 ---~~I~~~~~vnIgVAVdt~~GLvvPVIrdAd~ksL~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fGi 476 (508)
+.|++++++|||+||++++||+||||+|+++++|.+|++++++|+++||+|+|.++||+|||||||| +|+ ||+
T Consensus 93 ~~~~~i~~~~~vnigvAV~t~~GL~vPvi~~ad~~sl~ei~~~i~~l~~~Ar~gkL~~~e~~ggTftISN---lG~-~G~ 168 (250)
T 3l60_A 93 GEGPQVHVHRGVHLGFGAATERGLLVPVVTDAQDKNTRELASRVAELITGAREGTLTPAELRGSTFTVSN---FGA-LGV 168 (250)
T ss_dssp TTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCGGGGSCCSEEEEC---GGG-GTC
T ss_pred CCCCeEEEcCceeEEEEEEcCCCeEEeEEecCCCCCHHHHHHHHHHHHHHHHcCCCChhhcCCCEEEEEc---CCC-CCc
Confidence 4999999999999999999999999999999999999999999999999999999999999999999 999 999
Q ss_pred cccceee---ehhhhcccce---eeEEeec
Q 010531 477 LLNLAFL---QLDLLRKGLS---LAWVQIS 500 (508)
Q Consensus 477 ~~~~Pil---~~~~~~~g~~---~~w~~~~ 500 (508)
..|+||+ +.++++.|.- | |++++
T Consensus 169 ~~ftpIinppq~aIL~vG~i~~~p-v~~~g 197 (250)
T 3l60_A 169 DDGVPVINHPEAAILGLGAIKPRP-VVVGG 197 (250)
T ss_dssp SSCCCCCCTTCSEEEEECCCEEEE-EEETT
T ss_pred ceeEeeeCCCCceEEEecceEEEe-EEECC
Confidence 9999998 5666666653 5 55543
No 5
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728}
Probab=100.00 E-value=3.3e-40 Score=322.31 Aligned_cols=168 Identities=20% Similarity=0.345 Sum_probs=157.6
Q ss_pred cccccCCchhhHHHHHhhhhccCCcceEEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCc
Q 010531 316 DYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNS 395 (508)
Q Consensus 316 ~~~~ipls~iRkaiA~~m~~S~~~iP~~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNa 395 (508)
..+++|+++|||+||++|.+|++++||+|++.++|+|+|+++|+++|+. |.|+|+++|++||++.||++||++|+
T Consensus 5 ~~~~~p~~~~r~~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~-----g~kls~~~~~ikA~~~Al~~~P~~N~ 79 (224)
T 3rqc_A 5 REEILEMHGLRRIIFDKMTKAKQIMPHFTVMEEVDVTSMVSILDSAKAR-----NRKVTVTGFLARIVPSILKQYPYLNA 79 (224)
T ss_dssp -CBCCCCCHHHHHHHHHHHHHHHHSCEEEEEECCBTHHHHHHHHHHTTT-----TCCCCHHHHHHHHHHHHHHHSGGGSB
T ss_pred CceEeeCcHHHHHHHHHHHHHhcCCCeEEEEEEEEHHHHHHHHHHHhhc-----CCCCCHHHHHHHHHHHHHHhCHHhhe
Confidence 3567899999999999999999999999999999999999999999752 78999999999999999999999999
Q ss_pred eeeCC--eeEEcCCccEEEEeecCCceEeeeecccccCCHHHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCcc
Q 010531 396 SWADE--YIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVP 473 (508)
Q Consensus 396 s~~~~--~I~~~~~vnIgVAVdt~~GLvvPVIrdAd~ksL~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~ 473 (508)
+|+++ .|++++++|||+||++++||+||||+|++++++.+|++++++|+++||+|+|.++|++|||||||| +|+
T Consensus 80 ~~~~~~~~i~~~~~v~igiAV~~~~GL~vPvi~~a~~~sl~~i~~~~~~l~~~ar~~~L~~~e~~ggtftISn---lG~- 155 (224)
T 3rqc_A 80 IYDETRRVYILKKYYNIGIAVDTPDGLNVFVIKDADRKSMVEISAEISDKASRARENKLQLDEVQDSTFTITN---VGT- 155 (224)
T ss_dssp BCCSSTTCCCEECSCCEEEEEECSSCEEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCCCGGGSCCCSEEEEE---CTT-
T ss_pred EEeCCCCEEEEeCccceEeEEEcCCceEEeEECCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEc---CCc-
Confidence 99987 999999999999999999999999999999999999999999999999999999999999999999 888
Q ss_pred ccccccceee---ehhhhcccc
Q 010531 474 LSILLNLAFL---QLDLLRKGL 492 (508)
Q Consensus 474 fGi~~~~Pil---~~~~~~~g~ 492 (508)
||+..++||+ +.++++.|.
T Consensus 156 ~G~~~~tpiin~pq~aIl~vG~ 177 (224)
T 3rqc_A 156 IGGIMSTPIINYPEVAILGVHR 177 (224)
T ss_dssp TCCSEEECCCCTTBSEEEEECC
T ss_pred CCccceEeccCCCCceEEEecc
Confidence 8999999998 555555555
No 6
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A
Probab=100.00 E-value=6.4e-40 Score=323.94 Aligned_cols=172 Identities=28% Similarity=0.368 Sum_probs=159.9
Q ss_pred ccccCCchhhHHHHHhhhhccCCcceEEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCce
Q 010531 317 YVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSS 396 (508)
Q Consensus 317 ~~~ipls~iRkaiA~~m~~S~~~iP~~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas 396 (508)
++++|+++|||+||++|.+||+++||+|++.++|+|+|+++|+++|+..+. .|.++|+++|++||++.||++||++|++
T Consensus 15 ~~~~~~~~~rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~-~g~kls~~~~~ikA~~~Al~~~P~~Na~ 93 (243)
T 1dpb_A 15 IEEVPMTRLMQIGATNLHRSWLNVPHVTQFESADITELEAFRVAQKAVAEK-AGVKLTVLPLLLKACAYLLKELPDFNSS 93 (243)
T ss_dssp CCCCCCCHHHHHHHHHHHHHHHHSCEEEEEEEEECHHHHHHHHHTHHHHHH-TTCCCCSHHHHHHHHHHHHHHSGGGGEE
T ss_pred ceEeeCcHHHHHHHHHHHHhCcCCCeEEEEEEEEhHHHHHHHHHHhhhhhh-ccCCCChHHHHHHHHHHHHHhChHhhEE
Confidence 467899999999999999999999999999999999999999999875443 5899999999999999999999999999
Q ss_pred eeCC--eeEEcCCccEEEEeecCCceEeeeecccccCCHHHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCccc
Q 010531 397 WADE--YIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPL 474 (508)
Q Consensus 397 ~~~~--~I~~~~~vnIgVAVdt~~GLvvPVIrdAd~ksL~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~f 474 (508)
|+++ .|++++++|||+||++++||+||||+|+++++|.+|++++++|+++||+|+|+++|++|||||||| +|+ |
T Consensus 94 ~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggtftISn---lG~-~ 169 (243)
T 1dpb_A 94 LAPSGQALIRKKYVHIGFAVDTPDGLLVPVIRNVDQKSLLQLAAEAAELAEKARSKKLGADAMQGACFTISS---LGH-I 169 (243)
T ss_dssp ECTTSSCEEECSSCCEEECEEETTEEECCEETTGGGSCHHHHHHHHHHHHHHHHTTCCCGGGGSCCSEEEEE---CTT-T
T ss_pred EecCCCeEEEeCceeEEEEEECCCcEEEEEeCCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEc---CCC-C
Confidence 9864 899999999999999999999999999999999999999999999999999999999999999999 999 9
Q ss_pred cccccceee---ehhhhcccce
Q 010531 475 SILLNLAFL---QLDLLRKGLS 493 (508)
Q Consensus 475 Gi~~~~Pil---~~~~~~~g~~ 493 (508)
|+..|+||+ +.++++.|.-
T Consensus 170 g~~~~tpIin~pq~aIl~vG~~ 191 (243)
T 1dpb_A 170 GGTAFTPIVNAPEVAILGVSKA 191 (243)
T ss_dssp CCSCCCCCCCTTSSEEEEECCC
T ss_pred CccceECccCCCCCeEEEcccc
Confidence 999999997 5555555543
No 7
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens}
Probab=100.00 E-value=4.7e-40 Score=324.13 Aligned_cols=176 Identities=43% Similarity=0.632 Sum_probs=162.2
Q ss_pred cccccCCchhhHHHHHhhhhccCCcceEEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCc
Q 010531 316 DYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNS 395 (508)
Q Consensus 316 ~~~~ipls~iRkaiA~~m~~S~~~iP~~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNa 395 (508)
.++++|+++|||+||++|.+||+++||+|++.++|+|+|+++|+++|+..+. +.++|+++|++||++.||++||++|+
T Consensus 11 ~~~~~~~~~~rk~ia~~m~~s~~~~P~~~~~~evDvt~l~~~r~~~k~~~~~--~~kls~~~~~ikAv~~Al~~~P~~Na 88 (239)
T 3b8k_A 11 VFTDIPISNIRRVIAQRLMQSKQTIPHYYLSIDVNMGEVLLVRKELNKILEG--RSKISVNDFIIKASALACLKVPEANS 88 (239)
T ss_dssp SCCCSSSCCSHHHHHHHHHHHHHHCCCCCEEEEECCTTHHHHHHHTHHHHTT--SSCCCHHHHHHHHHHHHHHHCCCSCT
T ss_pred CceeccCChHHHHHHHHHHHhccCCCeEEEEEEEEcHHHHHHHHHHHhhhhc--cCCCCHHHHHHHHHHHHHHhChHhhE
Confidence 4678999999999999999999999999999999999999999999865332 36999999999999999999999999
Q ss_pred eeeCCeeEEcCCccEEEEeecCCceEeeeecccccCCHHHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCcccc
Q 010531 396 SWADEYIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLS 475 (508)
Q Consensus 396 s~~~~~I~~~~~vnIgVAVdt~~GLvvPVIrdAd~ksL~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fG 475 (508)
+|+++.|++++++|||+||++++||+||||+|+++++|.+|++++++|+++||+|+|+++||+|||||||| +|+ ||
T Consensus 89 ~~~~~~i~~~~~v~igvAV~~~~GL~vPvi~~a~~~~l~~i~~~~~~l~~~ar~~kL~~~e~~ggtftISn---lG~-~g 164 (239)
T 3b8k_A 89 SWMDTVIRQNHVVDVSVAVSTPAGLITPIVFNAHIKGVETIANDVVSLATKAREGKLQPHEFQGGTFTISN---LGM-FG 164 (239)
T ss_dssp TSCCCSSSCSCCCCEEECEECSSCEECCEECCSSCCCHHHHHHHHHHHHHHHHTTCCCGGGGCCCSEEEEE---CCS-SC
T ss_pred EEECCEEEEeCceeEEEEEEcCCcEEEEEEcCCCCCCHHHHHHHHHHHHHHHHcCCCCccccCCCEEEEEc---CCC-CC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999 898 89
Q ss_pred ccccceee---ehhhhcccce---eeEE
Q 010531 476 ILLNLAFL---QLDLLRKGLS---LAWV 497 (508)
Q Consensus 476 i~~~~Pil---~~~~~~~g~~---~~w~ 497 (508)
+..|+||+ +.++++.|.- |+|+
T Consensus 165 ~~~ftpiin~pq~aIl~vG~~~~~pv~~ 192 (239)
T 3b8k_A 165 IKNFSAIINPPQACILAIGASEDKLVPA 192 (239)
T ss_dssp CSSCCCCCCTTSCCCCEECCCCCSCCCC
T ss_pred ceeEECcCCCCceEEEECcccEEEEEEE
Confidence 99999998 5556655553 6553
No 8
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A*
Probab=100.00 E-value=2.4e-39 Score=322.99 Aligned_cols=175 Identities=21% Similarity=0.282 Sum_probs=159.8
Q ss_pred cccccCCchhhHHHHHhhhhccCCcceEEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCc
Q 010531 316 DYVDIPHSQIRKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNS 395 (508)
Q Consensus 316 ~~~~ipls~iRkaiA~~m~~S~~~iP~~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNa 395 (508)
.++++|+++|||+||++|.+|+ ++||||++.++|+|+|+++|+++|+..+ .+|.++|+++|++||++.||++||++|+
T Consensus 30 ~~~~~p~~~~rk~ia~~m~~S~-~~P~~~~~~evDvt~l~~~r~~~k~~~~-~~g~kls~~~~~ikAva~Al~~~P~~Na 107 (262)
T 2ii3_A 30 KDRTEPVKGFHKAMVKTMSAAL-KIPHFGYCDEVDLTELVKLREELKPIAF-ARGIKLSFMPFFLKAASLGLLQFPILNA 107 (262)
T ss_dssp CCEEEECCGGGHHHHHHHHHGG-GSCEEEEEEEEECHHHHHHHHHHHHHHH-HTTCCCCSHHHHHHHHHHHHHHCGGGSE
T ss_pred CcceecCCHHHHHHHHHHHHhh-hCCeEEEEEEEEhHHHHHHHHHHhhhhh-hccCCccHHHHHHHHHHHHHHhChHhhE
Confidence 3567899999999999999996 6999999999999999999999987433 3589999999999999999999999999
Q ss_pred eeeCC--eeEEcCCccEEEEeecCCceEeeeecccccCCHHHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCcc
Q 010531 396 SWADE--YIRQFKNVNINVAVQTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVP 473 (508)
Q Consensus 396 s~~~~--~I~~~~~vnIgVAVdt~~GLvvPVIrdAd~ksL~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~ 473 (508)
+|+++ .|++++++|||+||++++||+||||+||++++|.+|++++++|+++||+|+|+++||+|||||||| +|+
T Consensus 108 ~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~ei~~~~~~l~~~ar~~kL~~~e~~ggTftISN---lG~- 183 (262)
T 2ii3_A 108 SVDENCQNITYKASHNIGIAMDTEQGLIVPNVKNVQIRSIFEIATELNRLQKLGSAGQLSTNDLIGGTFTLSN---IGS- 183 (262)
T ss_dssp EECTTSCEEEECSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHHHHTCCCHHHHSCCCEEEEC---GGG-
T ss_pred EEeCCCCEEEEecccceEEEEEcCCCEEEEEecCCCCCCHHHHHHHHHHHHHHHHhCCCCcccCCCCEEEEEe---CCC-
Confidence 99864 899999999999999999999999999999999999999999999999999999999999999999 999
Q ss_pred ccccccceee---ehhhhcccc---eeeE
Q 010531 474 LSILLNLAFL---QLDLLRKGL---SLAW 496 (508)
Q Consensus 474 fGi~~~~Pil---~~~~~~~g~---~~~w 496 (508)
||+..++||+ +.++++.|. +|+|
T Consensus 184 ~G~~~~tPIinppq~aIL~vG~~~~~pv~ 212 (262)
T 2ii3_A 184 IGGTYAKPVILPPEVAIGALGTIKALPRF 212 (262)
T ss_dssp TCCSCEECCCCTTCCEEEEECCCEEEEEE
T ss_pred CCccceECccCCCcceEEEcCccEEEEEE
Confidence 9999999997 555555554 4644
No 9
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=99.97 E-value=1.3e-31 Score=262.22 Aligned_cols=167 Identities=42% Similarity=0.665 Sum_probs=39.2
Q ss_pred ceEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCee-eecCCEEEEEecc
Q 010531 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKE-IKVGEVIAITVEE 196 (508)
Q Consensus 118 ~~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~-v~vG~~la~i~~~ 196 (508)
+++|+||+||++|+||+|++|+|++||.|++||+||+|||||++++|+||++|+|.++++++|+ . |.+|++|+++.++
T Consensus 3 ~~ei~mP~lGesm~eG~I~~w~vk~Gd~V~~Gd~L~~iEtdK~~~ei~Ap~~G~v~~i~v~~G~-~~V~~G~~l~~i~~~ 81 (229)
T 1zy8_K 3 PIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGS-KNIRLGSLIGLIVEE 81 (229)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeEecCCCCCCCCcEEEEEEecCCCCEeCCCCEEEEEecCCceeEEecCCCeEEEEEEecCCC-eeecCCCEEEEEecc
Confidence 4689999999999999999999999999999999999999999999999999999999999997 7 9999999998654
Q ss_pred CCccccccCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCCCCCCCCCCCCCCCCCccccChhHHHHHHHcCCCCCccc
Q 010531 197 EEDIPKFKDYSPSVSDAGAAPAKEPSPPPPPKQEEVEKPISTSEPKASKPSAASPEDRLFASPVARNLAEEHNVSLSSIK 276 (508)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~aSP~aRrLA~e~gIDLs~V~ 276 (508)
+++..... .+..... +......+.+. ....+. ...+. .. .......++++||+|||||+|+||||+.|+
T Consensus 82 ~~~~~~~~--~~~~~~~---~~~~~~~~~~~---~~~~~~-~~~~~-~~-~~~~~~~~~~asP~vRklAre~gVDL~~V~ 150 (229)
T 1zy8_K 82 GEDWKHVE--IPKDVGP---PPPVSKPSEPR---PSPEPQ-ISIPV-KK-EHIPGTLRFRLSPAARNILEKHSLDASQGT 150 (229)
T ss_dssp -----------------------------------------------------------CBCHHHHHHHHHTTCCSSSSC
T ss_pred Cccccccc--ccccccc---ccccccCCCcc---cccccc-cCCCc-cc-ccccccccccCChHHHHHHHHcCCCccccC
Confidence 33211100 0000000 00000000000 000000 00000 00 000112367899999999999999999999
Q ss_pred ccCCCCccchhhHHHHHHhc
Q 010531 277 GTGPNGLIVKADIEDYLASR 296 (508)
Q Consensus 277 GTGp~GRItk~DV~~~~~~~ 296 (508)
|||++|||+++||++|++..
T Consensus 151 GTGp~GRItk~DV~~~~~~~ 170 (229)
T 1zy8_K 151 ATGPRGIFTKEDALKLVQLK 170 (229)
T ss_dssp CCSTTSCBCHHHHHHHHHHH
T ss_pred CCCCCCceehHHHHHHHhhh
Confidence 99999999999999998753
No 10
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=99.96 E-value=3.3e-30 Score=299.27 Aligned_cols=157 Identities=18% Similarity=0.236 Sum_probs=123.4
Q ss_pred hhhhccCCcceEEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceeeCC----eeEEcCC
Q 010531 332 RLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADE----YIRQFKN 407 (508)
Q Consensus 332 ~m~~S~~~iP~~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~~~----~I~~~~~ 407 (508)
+|.+|+ ++||+|++.++|+|+|+++|+++|+..+...|.|+|+++|++||++.||++||.+|++|+++ .|+++++
T Consensus 1 ~m~~S~-~~P~~t~~~evDvt~l~~~R~~~k~~~~~~~g~kls~~~~iikAva~AL~~~P~~Na~~~~~~~~~~i~~~~~ 79 (1113)
T 2xt6_A 1 GMNASL-EVPTATSVRAIPAKLMIDNRVVINNHLKRTRGGKISFTHLLGYAIVQAVKKFPNMNRHFAVVDGKPTAITPAH 79 (1113)
T ss_dssp -------CCCEEEEEEEEECHHHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHCGGGGCEEEESSSSEEEECCSS
T ss_pred Chhhhc-cCCeEEEEEEEehHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHHHHHHhChHhhEEEeccCCCceEEEeCc
Confidence 578885 89999999999999999999999976655568999999999999999999999999999854 6999999
Q ss_pred ccEEEEeecC--Cc---eEeeeecccccCCHHHHHHHHHHHHHHHHcCCCCCCccCCCeEEecCCCCCCcccccccccee
Q 010531 408 VNINVAVQTE--NG---LYVPVIRDADKKGLSTIAEEVRQLAQKAKDNSLKPQDYELPIWEDPSASSNSVPLSILLNLAF 482 (508)
Q Consensus 408 vnIgVAVdt~--~G---LvvPVIrdAd~ksL~eIa~ei~~L~~kAr~gkL~~~dl~GGTFTISN~GslGg~fGi~~~~Pi 482 (508)
|||||||+++ +| |+|||||||++++|.+|++++++|+++||+|+|+++||+|||||||| +|+ ||+..++||
T Consensus 80 vnigiAV~t~~~~G~~gL~vPvI~~a~~~sl~ei~~~i~~l~~rAr~gkL~~~d~~ggTftISN---lG~-~G~~~~tPI 155 (1113)
T 2xt6_A 80 TNLGLAIDLQGKDGNRSLVVAAIKRCETMRFGQFIAAYEDIVRRARDGKLTAEDFSGVTISLTN---PGT-LGTVHSVPR 155 (1113)
T ss_dssp CCEEEEC-----------CEEEECCGGGCCHHHHHHHHHHHHHHHTTTCCCGGGTSCCSEEEEC---C------------
T ss_pred ccEEEEEeccCCCCceeEEeeeecCCCCCCHHHHHHHHHHHHHHHhcCCCCccccCCCEEEEeC---CCc-CCCcceECC
Confidence 9999999997 66 99999999999999999999999999999999999999999999999 999 999999999
Q ss_pred e---ehhhhcccce
Q 010531 483 L---QLDLLRKGLS 493 (508)
Q Consensus 483 l---~~~~~~~g~~ 493 (508)
+ +.++++.|.-
T Consensus 156 inppq~aIL~vG~i 169 (1113)
T 2xt6_A 156 LMQGQGAIIGAGAM 169 (1113)
T ss_dssp -CTTCSEEEEECCC
T ss_pred CCCCCceEEEcCcc
Confidence 7 5555555543
No 11
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A*
Probab=99.96 E-value=4.6e-29 Score=241.82 Aligned_cols=139 Identities=11% Similarity=0.053 Sum_probs=124.3
Q ss_pred CCcceEEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceeeCCeeEEcCCccEEEEe-ec
Q 010531 338 QTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQFKNVNINVAV-QT 416 (508)
Q Consensus 338 ~~iP~~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~~~~I~~~~~vnIgVAV-dt 416 (508)
.++||+|++.++|+|+|+++|++ .++|+++|++||++.||++||++|++|+++.|++++++|||+|| ++
T Consensus 23 ~~~P~~~~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~~~v~igiAVf~t 92 (213)
T 3cla_A 23 RLPCGFSLTSKIDITTLKKSLDD----------SAYKFYPVMIYLIAQAVNQFDELRMAIKDDELIVWDSVDPQFTVFHQ 92 (213)
T ss_dssp TSCCEEEEEEEEECHHHHHHHHT----------SSCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEESCCEEEEEEEET
T ss_pred CCCceEEEEEEEEHHHHHHHHHH----------hCCCHHHHHHHHHHHHHhhCHHhhEEEECCEEEEEeccceeEEEEeC
Confidence 68999999999999999999853 36999999999999999999999999999999999999999999 99
Q ss_pred CCceEeeeecccccCCHHHHHHHHHHHHHHHHcC-CCCC-CccCCCeEEecCCCCC-------Cccc-cccccceeeehh
Q 010531 417 ENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDN-SLKP-QDYELPIWEDPSASSN-------SVPL-SILLNLAFLQLD 486 (508)
Q Consensus 417 ~~GLvvPVIrdAd~ksL~eIa~ei~~L~~kAr~g-kL~~-~dl~GGTFTISN~Gsl-------Gg~f-Gi~~~~Pil~~~ 486 (508)
++||++|||++ +.+++.+|++++++|+++||+| +|.+ +||+||||||||+|.+ |+ + |...++||+.++
T Consensus 93 ~~GL~vpvi~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~ggtftISnlg~~~ft~i~~~~-~~g~~~~~PIi~~G 170 (213)
T 3cla_A 93 ETETFSALSCP-YSSDIDQFMVNYLSVMERYKSDTKLFPQGVTPENHLNISALPWVNFDSFNLNV-ANFTDYFAPIITMA 170 (213)
T ss_dssp TTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTSSCCSSEEEEEEETTCCCSCCCCCC-SCCTTCCSCEEEEE
T ss_pred CCceEEEEEec-CCCCHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCEEEEEcCCCCCcccccccC-CCCCcccccEEEee
Confidence 99999999987 5699999999999999999996 9988 8999999999995544 33 4 335678888766
Q ss_pred hh
Q 010531 487 LL 488 (508)
Q Consensus 487 ~~ 488 (508)
.+
T Consensus 171 ~~ 172 (213)
T 3cla_A 171 KY 172 (213)
T ss_dssp CC
T ss_pred EE
Confidence 44
No 12
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A*
Probab=99.95 E-value=2.4e-28 Score=237.74 Aligned_cols=145 Identities=11% Similarity=0.069 Sum_probs=124.9
Q ss_pred hHHHHHhhhhccCCcceEEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceeeCCeeEEc
Q 010531 326 RKITASRLLFSKQTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWADEYIRQF 405 (508)
Q Consensus 326 RkaiA~~m~~S~~~iP~~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~~~~I~~~ 405 (508)
||.--+.. ...++||+|++.++|+|+|+++|++ .++|+++|++||++.||++||++|++|+++.|+++
T Consensus 18 R~~~f~~f--~~~~~P~~t~~~evDvt~l~~~rk~----------~~ls~~~~~ikAv~~Al~~~P~~Na~~~~~~i~~~ 85 (219)
T 1q23_A 18 RKEHFEAF--QSVAQCTYNQTVQLDITAFLKTVKK----------NKHKFYPAFIHILARLMNAHPEFRMAMKDGELVIW 85 (219)
T ss_dssp THHHHHHH--TTTTCEEEEEEEEEECHHHHHHHHH----------TTCCHHHHHHHHHHHHHTTCGGGSEEEETTEEEEE
T ss_pred CHHHHHHh--cCCCCcEEEEEEEEEhHHHHHHHHH----------cCCCHHHHHHHHHHHHHHhChHhhEEEECCEEEEe
Confidence 44444444 3478999999999999999999864 26899999999999999999999999999999999
Q ss_pred CCccEEEEe-ecCCceEeeeecccccCCHHHHHHHHHHHHHHHHcC-CCCC-CccCCCeEEecCCCCCCcccc-------
Q 010531 406 KNVNINVAV-QTENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKDN-SLKP-QDYELPIWEDPSASSNSVPLS------- 475 (508)
Q Consensus 406 ~~vnIgVAV-dt~~GLvvPVIrdAd~ksL~eIa~ei~~L~~kAr~g-kL~~-~dl~GGTFTISN~GslGg~fG------- 475 (508)
+++|||+|| ++++||++|||++ ..+++.+|++++++|+++||+| +|.+ +|+ |||||||| +|+ +|
T Consensus 86 ~~v~igiAV~~t~~GL~~pvi~~-~~~~l~~i~~~~~~l~~~ar~~~kL~~~~~~-ggtftISn---lG~-~~ft~i~~~ 159 (219)
T 1q23_A 86 DSVHPCYTVFHEQTETFSSLWSE-YHDDFRQFLHIYSQDVACYGENLAYFPKGFI-ENMFFVSA---NPW-VSFTSFDLN 159 (219)
T ss_dssp SCCEEEEEEEETTTTEEEEEECC-CCSSHHHHHHHHHHHHHHHTTCCSSSTTCCC-SSEEEEEE---CTT-CCCSEEEEE
T ss_pred cccCeEEEEEecCCcEEEEEEec-CCCCHHHHHHHHHHHHHHHHccCCCCCcccc-CCEEEEEc---Ccc-ccccccccC
Confidence 999999999 9999999999997 5689999999999999999998 6976 999 99999999 555 43
Q ss_pred ----ccccceeeehhhh
Q 010531 476 ----ILLNLAFLQLDLL 488 (508)
Q Consensus 476 ----i~~~~Pil~~~~~ 488 (508)
...++||+.++.+
T Consensus 160 ~~~~~~~~~pIi~~G~~ 176 (219)
T 1q23_A 160 VANMDNFFAPVFTMGKY 176 (219)
T ss_dssp ESCCTTCCSCEEEECCC
T ss_pred CCCCccceeEEEecccE
Confidence 2345677766543
No 13
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron}
Probab=99.94 E-value=2.1e-27 Score=230.78 Aligned_cols=139 Identities=12% Similarity=0.064 Sum_probs=123.5
Q ss_pred CCcceEEEeeeecHHHHHHHHHHHhhHHHHhcCCceeHHHHHHHHHHHHHhhCCCCCceee-CCeeEEcCCccEEEEe-e
Q 010531 338 QTIPHYYLTVDICVDNLMGLRNQLNSIQEASAGKRISVNDLVIKAAALALRKVPRCNSSWA-DEYIRQFKNVNINVAV-Q 415 (508)
Q Consensus 338 ~~iP~~~l~~~vdvt~L~~lR~~l~~~~~~~~g~klSi~~~liKAva~AL~~~P~lNas~~-~~~I~~~~~vnIgVAV-d 415 (508)
.++||+|++.++|+|+|+++|++. ++|+++|++||++.||++||++|++|+ ++.|++++++|||+|| +
T Consensus 25 ~~~P~~~~~~evDvt~l~~~rk~~----------~ls~~~~~ikAv~~Al~~~P~~n~~~~~~~~i~~~~~i~igvAVf~ 94 (217)
T 2i9d_A 25 FQNPQLSITSEVECGGARQRAKAA----------GQSFFLHYLYAVLRAANEIPEFRYRIDPDGRVVLYDTIDMLSPIKI 94 (217)
T ss_dssp CSBCEEEEEEEEECHHHHHHHHHT----------TCCHHHHHHHHHHHHHHHSGGGGEEECTTSCEEEESCCEEEEEEEC
T ss_pred CCCceEEEEEEEEhHHHHHHHHHc----------CCCHHHHHHHHHHHHHHhCHHhheEEcCCCEEEEecccCeEEEEEe
Confidence 689999999999999999998642 699999999999999999999999999 8999999999999999 9
Q ss_pred cCCceEeeeecccccCCHHHHHHHHHHHHHHHHc-CCCCCC------ccCCCeEEecCCCCC-------Cccc-cccccc
Q 010531 416 TENGLYVPVIRDADKKGLSTIAEEVRQLAQKAKD-NSLKPQ------DYELPIWEDPSASSN-------SVPL-SILLNL 480 (508)
Q Consensus 416 t~~GLvvPVIrdAd~ksL~eIa~ei~~L~~kAr~-gkL~~~------dl~GGTFTISN~Gsl-------Gg~f-Gi~~~~ 480 (508)
+++||++||+.. ..+++.+|++++++|+++||+ |+|+++ |++||||||||+|.+ |+ + |...++
T Consensus 95 t~~GL~~pv~~~-~~~~~~~i~~~~~~l~~~ar~~~kL~~~~~~~~~e~~ggtftISnlg~~~ft~i~~~~-~~g~~~~~ 172 (217)
T 2i9d_A 95 KENGKFFTTRFP-YHNDFDTFYQEARLIIDAIPEDGDPYAAENEEVADGDYGLILLSATPDLYFTSITGTQ-EKRSGNNY 172 (217)
T ss_dssp STTSCEEEEEEC-CCSSHHHHHHHHHHHHHHCCSSCCTTHHHHHHHHHTCCCEEEEEECTTCCCSEECCCB-CSTTCCSS
T ss_pred cCCceEeEEEec-CCCCHHHHHHHHHHHHHHHHhcCCCCCccccccccCCCCEEEEEcCCccccceeecCC-CCCccceE
Confidence 999999999974 568999999999999999999 599995 999999999995544 33 4 335678
Q ss_pred eeeehhhh
Q 010531 481 AFLQLDLL 488 (508)
Q Consensus 481 Pil~~~~~ 488 (508)
||+.++.+
T Consensus 173 PIi~~Gk~ 180 (217)
T 2i9d_A 173 PLLNAGKA 180 (217)
T ss_dssp CEEEECCC
T ss_pred EEEecceE
Confidence 88876644
No 14
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=99.81 E-value=7.9e-20 Score=163.68 Aligned_cols=99 Identities=46% Similarity=0.823 Sum_probs=83.0
Q ss_pred cccccccCCCCCCceEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeee
Q 010531 105 LKRGFSSDSGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEI 184 (508)
Q Consensus 105 ~~r~f~~~~~~~~~~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v 184 (508)
.+|.|.....+|++++|.||+||++|.+|+|++|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|++.|
T Consensus 14 ~~~~~~~~~~~p~~~~i~~P~lG~~~~~G~V~~~~V~~Gd~V~~Gd~L~~iEa~K~~~~I~Ap~~G~V~~i~v~~Gd~~V 93 (128)
T 1y8o_B 14 LENLYFQGSSYPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDKATIGFEVQEEGYLAKILVPEGTRDV 93 (128)
T ss_dssp ---------CCCSEEEEECCCSSTTCSEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCSE
T ss_pred hccccCccccCCcceeEEcCCCCCCcccEEEEEEecCCCCEecCCCEEEEEEcCcceeEEeCCCCeEEEEEEeCCCCeee
Confidence 46788887889999999999999999999999999999999999999999999999999999999999999999994269
Q ss_pred ecCCEEEEEeccCCccccc
Q 010531 185 KVGEVIAITVEEEEDIPKF 203 (508)
Q Consensus 185 ~vG~~la~i~~~~~~~~~~ 203 (508)
.+|++|+++.+.++++..+
T Consensus 94 ~~G~~L~~i~~~~~~~~~~ 112 (128)
T 1y8o_B 94 PLGTPLCIIVEKEADISAF 112 (128)
T ss_dssp ETTCEEEEEESSGGGGGGG
T ss_pred cCCCEEEEEecCccchhhh
Confidence 9999999997665554443
No 15
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-19 Score=157.61 Aligned_cols=92 Identities=53% Similarity=0.872 Sum_probs=83.3
Q ss_pred CCCCCceEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEE
Q 010531 113 SGLPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAI 192 (508)
Q Consensus 113 ~~~~~~~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~ 192 (508)
+.+|++++|+||+||++|.+|+|.+|+|++||.|++||+||+||+||+.++|+||++|+|.++++++|++.|.+|++|++
T Consensus 2 ~~~p~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~L~~iE~~K~~~~i~Ap~~G~V~~i~v~~G~~~V~~G~~l~~ 81 (108)
T 2dne_A 2 SSGSSGQKVPLPSLSPTMQAGTIARWEKKEGDKINEGDLIAEVETDKATVGFESLEECYMAKILVAEGTRDVPIGAIICI 81 (108)
T ss_dssp CCCCCCEEEECCCCSSSCCEEEEEECSSCTTCEECTTSEEEEEECSSCEEEEECSSSEEEEECSSCTTCCSEETTCEEEE
T ss_pred CCCccceEEecCCCCCCcccEEEEEEEcCCCCEecCCCEEEEEEcCcceeEEeCCCCEEEEEEEeCCCCeeecCCCEEEE
Confidence 35889999999999999999999999999999999999999999999999999999999999999999416999999999
Q ss_pred EeccCCcccccc
Q 010531 193 TVEEEEDIPKFK 204 (508)
Q Consensus 193 i~~~~~~~~~~~ 204 (508)
+.+.++++..+.
T Consensus 82 i~~~~~~~~~~~ 93 (108)
T 2dne_A 82 TVGKPEDIEAFK 93 (108)
T ss_dssp EESCHHHHHHHH
T ss_pred EecCccchhhhh
Confidence 977655544443
No 16
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=99.77 E-value=1.6e-18 Score=144.50 Aligned_cols=83 Identities=48% Similarity=0.877 Sum_probs=77.6
Q ss_pred CCCceEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 115 LPPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 115 ~~~~~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
+|++++|.||+||+++.+|+|.+|++++||.|++||+||+||+||+.++|+||++|+|.++++++|++.|.+|++|+++.
T Consensus 2 ~~~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~~~V~~G~~l~~i~ 81 (87)
T 3crk_C 2 YPPHMQVLLPALSPTMTMGTVQRWEKKVGEKLSEGDLLAEIETDXATIGFEVQEEGYLAKILVPEGTRDVPLGTPLCIIV 81 (87)
T ss_dssp CCCEEEEECCCSSTTCCEEEEEEECSCTTCEECTTCEEEEEECSSCEEEEECCSCEEEEEESSCTTCCCEETTCEEEEEE
T ss_pred CCcceEEeCCCCCCCCCcEEEEEEEcCCCCEEcCCCEEEEEECCcccceeecCcCcEEEEEEECCCCeEECCCCEEEEEE
Confidence 67789999999999999999999999999999999999999999999999999999999999999941599999999986
Q ss_pred ccC
Q 010531 195 EEE 197 (508)
Q Consensus 195 ~~~ 197 (508)
+.+
T Consensus 82 ~~~ 84 (87)
T 3crk_C 82 EKE 84 (87)
T ss_dssp SSS
T ss_pred ccc
Confidence 543
No 17
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=3.3e-18 Score=146.27 Aligned_cols=82 Identities=55% Similarity=0.907 Sum_probs=76.9
Q ss_pred CCceEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeee-ecCCEEEEEe
Q 010531 116 PPHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEI-KVGEVIAITV 194 (508)
Q Consensus 116 ~~~~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v-~vG~~la~i~ 194 (508)
+++++|.||++|++|.+|+|.+|++++||.|++||+||+||+||+.++|+||++|+|.++++++|+ .| .+|++|+++.
T Consensus 5 ~~~~~i~~P~lg~~~~~G~i~~~~v~~Gd~V~~G~~L~~ie~~K~~~~i~Ap~~G~v~~i~v~~G~-~Vv~~G~~l~~i~ 83 (98)
T 2dnc_A 5 SSGIKILMPSLSPTMEEGNIVKWLKKEGEAVSAGDALCEIETDKAVVTLDASDDGILAKIVVEEGS-KNIRLGSLIGLIV 83 (98)
T ss_dssp CCCEEEECCCCSTTCSEECEEEESSCTTCEECTTSEEEEEECSSCEEEEECSSCEEEEECSSCTTC-CCEESSCEEEEEE
T ss_pred cccEEEECCCCCCCCccEEEEEEEcCCCCEeCCCCEEEEEEcccceeEEeCCCCEEEEEEEeCCCC-EEcCCCCEEEEEe
Confidence 456799999999999999999999999999999999999999999999999999999999999997 88 9999999986
Q ss_pred ccCC
Q 010531 195 EEEE 198 (508)
Q Consensus 195 ~~~~ 198 (508)
..++
T Consensus 84 ~~~~ 87 (98)
T 2dnc_A 84 EEGE 87 (98)
T ss_dssp CTTS
T ss_pred cCCC
Confidence 5443
No 18
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=99.72 E-value=1.4e-17 Score=141.02 Aligned_cols=78 Identities=24% Similarity=0.395 Sum_probs=74.6
Q ss_pred CceEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 117 PHQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 117 ~~~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
..++|.||++|+++.+|+|.+|++++||.|++||+|++||+||+.++|+||++|+|.++++++|+ .|.+|++|+++..
T Consensus 3 ~~~~i~~P~lg~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~K~~~~i~Ap~~G~V~~i~v~~G~-~V~~G~~l~~i~~ 80 (93)
T 1k8m_A 3 QVVQFKLSDIGEGIREVTVKEWYVKEGDTVSQFDSICEVQSDKASVTITSRYDGVIKKLYYNLDD-IAYVGKPLVDIET 80 (93)
T ss_dssp CCEEEECCSSCTTSCCEEEEEECCCTTCEECSSSCCEEEECSSCEEECCCSSCEEEEEECCCSSC-EECTTSEEEEEEC
T ss_pred cceEEEcCCCCCCCCCEEEEEEEcCCcCEECCCCEEEEEEcCCcEEEEEcCCCEEEEEEEcCCCC-EeCCCCEEEEEec
Confidence 35789999999999999999999999999999999999999999999999999999999999997 9999999999853
No 19
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=99.68 E-value=7.3e-17 Score=131.71 Aligned_cols=75 Identities=31% Similarity=0.625 Sum_probs=72.6
Q ss_pred eEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
+++.||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++++++|+ .|.+|++|+++.
T Consensus 2 ~~i~~P~~g~~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~v~~g~~l~~i~ 76 (79)
T 1ghj_A 2 IDIKAPTFPESIADGTVATWHKKPGEAVKRDELIVDIETDKVVMEVLAEADGVIAEIVKNEGD-TVLSGELLGKLT 76 (79)
T ss_dssp EEEECCCCCSSCSCEEECCCSSCTTSEECSSCEEEEEECSSCEEEEECSSCEEEEEESSCTTC-EECTTCEEEEEC
T ss_pred cEEECCCCCCCCCCEEEEEEEcCCCCEECCCCEEEEEEccceeEEEEcCCCEEEEEEEcCCcC-EECCCCEEEEEe
Confidence 579999999999999999999999999999999999999999999999999999999999997 999999999874
No 20
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.62 E-value=1.9e-17 Score=135.80 Aligned_cols=75 Identities=29% Similarity=0.564 Sum_probs=72.2
Q ss_pred eEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
+++.||++|+++.+|+|.+|++++||.|++||+|++||++|+..+|+||++|+|.++++++|+ .|.+|++|+++.
T Consensus 3 ~~i~~P~~g~~~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~v~~G~~l~~i~ 77 (80)
T 1pmr_A 3 VDILVPDLPESVADATVATWHKKPGDAVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGT-TVTSRQILGRLR 77 (80)
T ss_dssp CCEECCCCCSCCSCEECCBCCCCTTCCBSSSCCBCBCCSSSCCCCCBCCSBCCCCBCTTCTTC-EECSSSEEEBCC
T ss_pred cEEEcCCCCCCCccEEEEEEECCCcCEECCCCEEEEEEccceEEEEECCCCEEEEEEEcCCcC-EECCCCEEEEEe
Confidence 579999999999999999999999999999999999999999999999999999999999997 899999998863
No 21
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=99.62 E-value=7.2e-16 Score=125.07 Aligned_cols=75 Identities=35% Similarity=0.523 Sum_probs=72.4
Q ss_pred eEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
+++.||++|+++.+|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+ .|..|++|+.+.
T Consensus 2 ~~i~~P~~g~~~~~G~v~~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~v~~g~~l~~i~ 76 (77)
T 2l5t_A 2 YEFKLPDIGEGVTEGEIVRWDVKEGDMVEKDQDLVEVMTDKVTVKIPSPVRGKIVKILYREGQ-VVPVGSTLLQID 76 (77)
T ss_dssp EEEECCCCSSSCCCEEEEECSCCTTCEECSCCCCCEEESSSCEEECCCCCCEEEEEECCCTTC-EECSCSEEEEEE
T ss_pred eEEECCCCCCCCccEEEEEEEeCCCCEECCCCEEEEEEccceEEEEECCCCEEEEEEEeCCcC-EECCCCEEEEEE
Confidence 579999999999999999999999999999999999999999999999999999999999997 999999999873
No 22
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=99.62 E-value=8.5e-16 Score=125.39 Aligned_cols=74 Identities=28% Similarity=0.428 Sum_probs=71.2
Q ss_pred eEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
++|.||++|++ +|+|.+|++++||.|++||+|++||++|+..+|.||++|+|.++++++|+ .|..|++|+.+..
T Consensus 3 ~~i~~p~~g~~--~G~v~~~~v~~G~~V~~G~~l~~ie~~~~~~~i~Ap~~G~v~~~~v~~G~-~V~~G~~l~~i~~ 76 (80)
T 1qjo_A 3 KEVNVPDIGGD--EVEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGD-KVKTGSLIMIFEV 76 (80)
T ss_dssp EEECCCCCSSS--CEEEEECCCCTTCEECBTSEEEEEESSSSCEEEEBSSCEEEEECCCCTTC-EECTTCCCEEEES
T ss_pred eEEECCCCCCC--CEEEEEEEcCCCCEECCCCEEEEEEcCCceEEEeCCCCEEEEEEecCCCC-EECCCCEEEEEEc
Confidence 58999999998 99999999999999999999999999999999999999999999999997 9999999999864
No 23
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=99.58 E-value=5.6e-15 Score=120.45 Aligned_cols=73 Identities=22% Similarity=0.326 Sum_probs=69.5
Q ss_pred eEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
++|.||++|++ + +|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+ .|..|++|+.+..
T Consensus 2 ~~i~~P~~g~~--~-~i~~~~v~~Gd~V~~G~~l~~le~~k~~~~i~Ap~~G~v~~~~v~~G~-~V~~g~~l~~i~~ 74 (79)
T 1iyu_A 2 EIIRVPDIGGD--G-EVIELLVKTGDLIEVEQGLVVLESAKASMEVPSPKAGVVKSVSVKLGD-KLKEGDAIIELEP 74 (79)
T ss_dssp EEEECCCCSSE--E-EEEEECCCTTCBCCSSSEEEEEECSSCEEEEECSSSSEEEEESCCTTC-EEETTSEEEEEEC
T ss_pred cEEECCCCCCC--C-EEEEEecCCCCEEcCCCEEEEEEccceEEEEECCCCEEEEEEEeCCCC-EECCCCEEEEEec
Confidence 47899999996 7 999999999999999999999999999999999999999999999997 9999999999854
No 24
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=99.55 E-value=1.9e-15 Score=123.79 Aligned_cols=76 Identities=22% Similarity=0.342 Sum_probs=71.9
Q ss_pred ceEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 118 HQEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 118 ~~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
.++|.||++| ++.+|+|.+|++++||.|++||+|+++|++|+..+|.||++|+|.++++++|+ .|..|++|+.+..
T Consensus 2 ~~~i~~p~~g-~~~~G~i~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~v~~g~~l~~i~~ 77 (81)
T 1gjx_A 2 LVELKVPDIG-GHENVDIIAVEVNVGDTIAVDDTLITLETDKATMDVPAEVAGVVKEVKVKVGD-KISEGGLIVVVEA 77 (81)
T ss_dssp CEECCCCCCS-SCSSEEEEEECCCSSCBCCSSCCCEEEECSSCEEEECCCCSSBBCCCCCCSSC-EECSSSCCCEECC
T ss_pred cEEEEcCCCC-CCCcEEEEEEEcCCCCEECCCCEEEEEEeCCcEEEEECCCCEEEEEEecCCCC-EeCCCCEEEEEEe
Confidence 4689999999 78999999999999999999999999999999999999999999999999997 9999999998743
No 25
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=99.38 E-value=5.6e-14 Score=116.36 Aligned_cols=71 Identities=30% Similarity=0.451 Sum_probs=66.9
Q ss_pred eEEecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 119 QEIGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 119 ~~i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
++|.+|.+ |+|.+|++++||.|++||+|++||++|+..+|.||++|+|.++++++|+ .|..|++|+.+...
T Consensus 3 ~~i~~p~~------G~v~~~~v~~Gd~V~~G~~L~~ie~~k~~~~i~Ap~~G~V~~~~v~~G~-~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 3 KEVNVPDI------VEVTEVMVKVGDKVAAEQSLITVEGDKASMEVPAPFAGVVKELKVNVGD-KVKTGSLIMIFEVE 73 (85)
T ss_dssp SCCCCCSC------CCCCSCCCSSSCCCCCSSSCCCCSCCCSEEEEECSSCBCCCEECSCTTC-CBCTTSEEEEEECC
T ss_pred cEEECCCe------EEEEEEEcCCCCEEcCCCEEEEEEccccEEEEECCCCEEEEEEEeCCCC-EECCCCEEEEEEcC
Confidence 47889988 8999999999999999999999999999999999999999999999997 99999999998653
No 26
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=99.31 E-value=5.3e-12 Score=100.39 Aligned_cols=64 Identities=20% Similarity=0.353 Sum_probs=60.9
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
.+|+|.+|++++||.|++||+|+++|++|...+|.||.+|+|.++++++|+ .|..|++|+.+.+
T Consensus 6 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~v~~G~-~V~~G~~l~~i~~ 69 (72)
T 1z6h_A 6 MAGNLWKVHVKAGDQIEKGQEVAILESMKMEIPIVADRSGIVKEVKKKEGD-FVNEGDVLLELSN 69 (72)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEESSCTTC-EECTTCEEEEEGG
T ss_pred ccEEEEEEEcCCcCEECCCCEEEEEECCccEEEEECCCCcEEEEEecCCCC-EECCCCEEEEEeC
Confidence 469999999999999999999999999999999999999999999999997 9999999998853
No 27
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=99.30 E-value=2e-12 Score=106.94 Aligned_cols=64 Identities=22% Similarity=0.351 Sum_probs=60.4
Q ss_pred CCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
..+|+|.+|++++||.|++||+|++||++|+.++|+||++|+|.+++ ++|+ .|.+|++|+.+.+
T Consensus 11 ~~~G~v~~~~v~~Gd~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~-~~G~-~V~~G~~l~~i~~ 74 (84)
T 2kcc_A 11 PSAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVKYIK-RPGA-VLEAGCVVARLEL 74 (84)
T ss_dssp SSSCCEEEESSCTTEEECTTCEEEEEECSSCEEEEECSSSEEEEECS-CTTC-CCCTTCCCEEEEC
T ss_pred CCCEEEEEEECCCCCEECCCCEEEEEEecceeEEEECCCCEEEEEEc-CCCC-EECCCCEEEEEeC
Confidence 35699999999999999999999999999999999999999999999 9997 8999999999854
No 28
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=99.28 E-value=9.7e-13 Score=111.20 Aligned_cols=79 Identities=18% Similarity=0.273 Sum_probs=29.3
Q ss_pred CCCCceEEecCCCCCCC----CeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCE
Q 010531 114 GLPPHQEIGMPSLSPTM----QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEV 189 (508)
Q Consensus 114 ~~~~~~~i~mP~lg~~~----~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~ 189 (508)
.+....+|.+|...+.. ..|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|.++.+++|+ .|..|++
T Consensus 11 ~~~~~~~v~~~~~~~~~v~a~~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~k~~~~i~AP~~G~V~~~~v~~G~-~V~~G~~ 89 (94)
T 2jku_A 11 VDLGTENLYFQSMTSSVLRSPMPGVVVAVSVKPGDAVAEGQEICVIEAMKMQNSMTAGKTGTVKSVHCQAGD-TVGEGDL 89 (94)
T ss_dssp -------------CCCCCCCSSSCEEEEECCCTTCCCCTTCCCEEEEC--------------------------------
T ss_pred ccccCEEEEcCCCCceEEECCCCEEEEEEECCCCCEEcCCCEEEEEecccccEEEECCCCEEEEEEcCCCcC-EECCCCE
Confidence 34555689999998775 589999999999999999999999999999999999999999999999997 9999999
Q ss_pred EEEE
Q 010531 190 IAIT 193 (508)
Q Consensus 190 la~i 193 (508)
|+.+
T Consensus 90 L~~i 93 (94)
T 2jku_A 90 LVEL 93 (94)
T ss_dssp ----
T ss_pred EEEE
Confidence 9875
No 29
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1.8e-11 Score=104.32 Aligned_cols=63 Identities=22% Similarity=0.398 Sum_probs=59.9
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
.+|+|.+|++++||.|++||+|+++|++|+..+|+||++|+|. +++++|+ .|..|++|+.+.+
T Consensus 24 ~~G~v~~~~v~~Gd~V~~Gq~L~~le~~k~~~~i~Ap~~G~V~-~~v~~G~-~V~~G~~l~~i~~ 86 (100)
T 2dn8_A 24 SAGKLTQYTVEDGGHVEAGSSYAEMEVMKMIMTLNVQERGRVK-YIKRPGA-VLEAGCVVARLEL 86 (100)
T ss_dssp SCEEEEEESSCTTEEECTTCEEEEEEETTEEEEEECSSSEEEE-ECSCTTC-EECSSCEEEEECC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEEecceEEEEEcCCCEEEE-EEeCCCC-EECCCCEEEEEEc
Confidence 5699999999999999999999999999999999999999999 9999997 9999999998853
No 30
>2eq9_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 2.09A {Thermus thermophilus}
Probab=99.22 E-value=5e-12 Score=90.95 Aligned_cols=40 Identities=33% Similarity=0.646 Sum_probs=37.5
Q ss_pred cccChhHHHHHHHcCCCCCcccccCCCCccchhhHHHHHH
Q 010531 255 LFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294 (508)
Q Consensus 255 v~aSP~aRrLA~e~gIDLs~V~GTGp~GRItk~DV~~~~~ 294 (508)
+++||+||+||+|+||||+.|+|||++|||+++||++|++
T Consensus 1 ~~asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~~ 40 (41)
T 2eq9_C 1 MLAVPAARKLARELGIPIEEVPGSGPLGRVRVEDVRAYAE 40 (41)
T ss_dssp CCBCHHHHHHHHHTTCCGGGSCCCSTTCCBCHHHHHHHHC
T ss_pred CCCChHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHhc
Confidence 4589999999999999999999999999999999999863
No 31
>3rnm_E Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex,...; protein-protein interaction, redox protein; HET: FAD NHE; 2.40A {Homo sapiens} SCOP: a.9.1.0 PDB: 1zwv_A
Probab=99.22 E-value=4e-12 Score=98.44 Aligned_cols=44 Identities=43% Similarity=0.746 Sum_probs=39.9
Q ss_pred CccccChhHHHHHHHcCCCCCcccccCCCCccchhhHHHHHHhc
Q 010531 253 DRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASR 296 (508)
Q Consensus 253 ~~v~aSP~aRrLA~e~gIDLs~V~GTGp~GRItk~DV~~~~~~~ 296 (508)
.++.+||+||+||+++||||+.|+|||++|||+++||++|++..
T Consensus 6 ~~v~aSPaaRrlA~e~gIdl~~V~GTG~~GRItk~DV~~~~~~~ 49 (58)
T 3rnm_E 6 RKTLATPAVRNLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQ 49 (58)
T ss_dssp --CCCCHHHHHHHHHTTCCGGGCCCCSGGGCCCHHHHHHHHHHH
T ss_pred CCcCcCHHHHHHHHHcCCCHHHCCCCCCCCceeHHHHHHHHhhh
Confidence 47889999999999999999999999999999999999998643
No 32
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=99.18 E-value=7.2e-11 Score=94.00 Aligned_cols=62 Identities=24% Similarity=0.398 Sum_probs=59.4
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
..|+|.+|++++||.|++||+|++++++|...+|.||.+|+|.++.+++|+ .|..|++|+.+
T Consensus 12 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~~~~~~i~ap~~G~v~~~~~~~G~-~v~~g~~l~~i 73 (74)
T 2d5d_A 12 MPGKVLRVLVRVGDRVRVGQGLLVLEAMKMENEIPSPRDGVVKRILVKEGE-AVDTGQPLIEL 73 (74)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEEETTEEEEEECSSSEEEEEECCCTTC-EECTTCEEEEE
T ss_pred CCEEEEEEEcCCCCEeCCCCEEEEEecccceEEEeCCCCEEEEEEEcCCcC-EECCCCEEEEE
Confidence 469999999999999999999999999999999999999999999999997 99999999876
No 33
>2eq8_C Pyruvate dehydrogenase complex, dihydrolipoamide acetyltransferase E2 component; protein-protein complex, oxidoreductase; HET: FAD; 1.94A {Thermus thermophilus}
Probab=99.16 E-value=1.4e-11 Score=88.17 Aligned_cols=37 Identities=38% Similarity=0.587 Sum_probs=35.9
Q ss_pred cChhHHHHHHHcCCCCCcccccCCCCccchhhHHHHH
Q 010531 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYL 293 (508)
Q Consensus 257 aSP~aRrLA~e~gIDLs~V~GTGp~GRItk~DV~~~~ 293 (508)
+||+||++|+++|||++.|+|||++|||+++||++|+
T Consensus 2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~ 38 (40)
T 2eq8_C 2 AAPSIRRLARELGVDLTRLRGTGLAGRITEEDVRRAA 38 (40)
T ss_dssp CCHHHHHHHHHHTCCGGGCCCCSTTSCCCHHHHHHHH
T ss_pred CChHHHHHHHHhCCChhhcCCCCCCCceeHHHHHHHh
Confidence 6999999999999999999999999999999999986
No 34
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=99.15 E-value=9.3e-11 Score=94.42 Aligned_cols=62 Identities=23% Similarity=0.400 Sum_probs=59.4
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
..|.|.+|++++||.|++||+|++++++|+..+|.||++|+|.++.+++|+ .|..|++|+.+
T Consensus 15 ~~G~v~~~~v~~G~~V~~G~~L~~l~~~~~~~~i~Ap~~G~v~~~~~~~G~-~v~~G~~l~~i 76 (77)
T 1dcz_A 15 LAGTVSKILVKEGDTVKAGQTVLVLEAMKMETEINAPTDGKVEKVLVKERD-AVQGGQGLIKI 76 (77)
T ss_dssp SSCEEEEECCCTTCEECTTSEEEEEEETTEEEEEECSSSEEEEEECCCTTC-BCCBTSEEEEE
T ss_pred CCEEEEEEEcCCcCEEcCCCEEEEEEccceeEEEECCCCEEEEEEecCCcC-EECCCCEEEEE
Confidence 468999999999999999999999999999999999999999999999997 99999999876
No 35
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=99.15 E-value=4.9e-11 Score=97.09 Aligned_cols=56 Identities=25% Similarity=0.430 Sum_probs=53.9
Q ss_pred EEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 137 RWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 137 ~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
+|++++||.|++||+|++||++|+..+|+||++|+|.++.+++|+ .|..|++|+.+
T Consensus 24 ~~~v~~G~~V~~G~~l~~ie~~k~~~~i~Ap~~G~v~~~~v~~G~-~V~~G~~L~~i 79 (80)
T 1bdo_A 24 KAFIEVGQKVNVGDTLCIVEAMKMMNQIEADKSGTVKAILVESGQ-PVEFDEPLVVI 79 (80)
T ss_dssp CCSCCTTCEECTTCEEEEEEETTEEEEEECSSCEEEEEECSCTTC-EECTTCEEEEE
T ss_pred ccccCCcCEECCCCEEEEEEeccEEEEEECCCCEEEEEEEcCCCC-EECCCCEEEEE
Confidence 479999999999999999999999999999999999999999997 99999999876
No 36
>2eq7_C 2-oxoglutarate dehydrogenase E2 component; protein-protein complex, oxidoreductase; HET: FAD NAD; 1.80A {Thermus thermophilus}
Probab=99.15 E-value=9.5e-12 Score=89.02 Aligned_cols=37 Identities=41% Similarity=0.587 Sum_probs=34.9
Q ss_pred cChhHHHHHHHcCCCCCcccccCCCCccchhhHHHHH
Q 010531 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYL 293 (508)
Q Consensus 257 aSP~aRrLA~e~gIDLs~V~GTGp~GRItk~DV~~~~ 293 (508)
+||+||+||+++||||+.|+|||++|||+++||++|+
T Consensus 2 asP~ar~la~e~gidl~~v~gtG~~gri~k~Dv~~~~ 38 (40)
T 2eq7_C 2 AMPAAERLMQEKGVSPAEVQGTGLGGRILKEDVMRHL 38 (40)
T ss_dssp CCHHHHHHHHHTTCCTTTSCCCSSSSCCCHHHHTTC-
T ss_pred CCcHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHh
Confidence 6999999999999999999999999999999998875
No 37
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=99.13 E-value=7.2e-11 Score=100.51 Aligned_cols=66 Identities=24% Similarity=0.338 Sum_probs=61.9
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEeccC
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEE 197 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~ 197 (508)
..|+|.+|++++||.|++||+|++||++|+..+|.||++|+|.++.+++|+ .|..|++|+++.+.+
T Consensus 21 ~~G~v~~~~v~~Gd~V~~Gq~L~~ie~~~~~~~i~AP~~G~V~~~~v~~G~-~V~~G~~L~~i~~~~ 86 (99)
T 2ejm_A 21 MTGTIEKVFVKAGDKVKAGDSLMVMIAMKMEHTIKSPKDGTVKKVFYREGA-QANRHTPLVEFEEEE 86 (99)
T ss_dssp SSEEEEEECCCTTEEECSSCEEEEEESSSSEEEEECSSCEEEEEESCCTTE-EECTTCBCEEECCCC
T ss_pred CCEEEEEEECCCCCEECCCCEEEEEEccceeEEEECCCCeEEEEEEcCCCC-EECCCCEEEEEECCC
Confidence 469999999999999999999999999999999999999999999999997 999999999986543
No 38
>1w85_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: a.9.1.1 PDB: 1w88_I* 1w4g_A 1w4e_A 1w4f_A 2pdd_A 2pde_A 1ebd_C*
Probab=99.11 E-value=2.6e-11 Score=90.65 Aligned_cols=41 Identities=41% Similarity=0.741 Sum_probs=38.8
Q ss_pred ccccChhHHHHHHHcCCCCCcccccCCCCccchhhHHHHHH
Q 010531 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLA 294 (508)
Q Consensus 254 ~v~aSP~aRrLA~e~gIDLs~V~GTGp~GRItk~DV~~~~~ 294 (508)
++++||+||+||+++||||+.|+|||++|||+++||++|+.
T Consensus 6 ~~~asP~ar~la~e~gidl~~v~gtG~~Gri~k~Dv~~~~~ 46 (49)
T 1w85_I 6 RVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLKEDIDAFLA 46 (49)
T ss_dssp CCCCCHHHHHHHHHTTCCTTTSCCCSGGGCCCHHHHHHHHC
T ss_pred cccCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHHh
Confidence 56789999999999999999999999999999999999974
No 39
>1bal_A Dihydrolipoamide succinyltransferase; glycolysis; NMR {Escherichia coli} SCOP: a.9.1.1 PDB: 1bbl_A 1w4h_A 2wav_A 2wxc_A 2btg_A 2bth_A 2cyu_A
Probab=99.09 E-value=2.3e-11 Score=91.76 Aligned_cols=40 Identities=43% Similarity=0.605 Sum_probs=37.7
Q ss_pred ccccChhHHHHHHHcCCCCCcccccCCCCccchhhHHHHH
Q 010531 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYL 293 (508)
Q Consensus 254 ~v~aSP~aRrLA~e~gIDLs~V~GTGp~GRItk~DV~~~~ 293 (508)
++++||+||+||+++||||+.|+|||++|||+++||+.|+
T Consensus 9 ~~~asP~aR~lA~e~gidl~~V~gtG~~GrI~k~DV~~~~ 48 (51)
T 1bal_A 9 NDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHL 48 (51)
T ss_dssp SCCCCGGGTTHHHHTTCCTTSSCCCSTTSCCCHHHHTTTS
T ss_pred CCCCChHHHHHHHHcCCCccccCCCCCCCcccHHHHHHHh
Confidence 5678999999999999999999999999999999999875
No 40
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=99.03 E-value=2.8e-10 Score=134.09 Aligned_cols=61 Identities=21% Similarity=0.406 Sum_probs=59.3
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
.|+|++|+|++||.|++||+|++|||||++++|+||.+|+|.+|++++|+ .|.+|++|++|
T Consensus 1175 ~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~v~ap~~G~v~~i~v~~G~-~V~~G~~l~~i 1235 (1236)
T 3va7_A 1175 TGRFWKPVAAVGDHVEAGDGVIIIEAMKTEMVVGATKSGKVYKILHKNGD-MVEAGDLVAVI 1235 (1236)
T ss_dssp CEEEEEESSCTTCEECSSCEEEEEEETTEEEEEECSSCEEEEEECCCTTC-EECTTCEEEEE
T ss_pred cEEEEEEEcCCCCEECCCCEEEEEEecCcceeEecCCCeEEEEEEeCCcC-EeCCCCEEEEe
Confidence 49999999999999999999999999999999999999999999999997 99999999987
No 41
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=99.03 E-value=3.1e-10 Score=126.68 Aligned_cols=62 Identities=27% Similarity=0.399 Sum_probs=59.8
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
..|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+ .|.+|++|+++
T Consensus 619 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamKm~~~i~ap~~G~v~~i~~~~G~-~v~~g~~l~~i 680 (681)
T 3n6r_A 619 MPGLIVKVDVEVGQEVQEGQALCTIEAMKMENILRAEKKGVVAKINASAGN-SLAVDDVIMEF 680 (681)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEEECSSCEEEEECSSSEEEEEECCCTTC-EECTTCEEEEE
T ss_pred CcEEEEEEEeCCCCEEcCCCEEEEEEecCceeEEECCCCeEEEEEEeCCcC-EeCCCCEEEEE
Confidence 459999999999999999999999999999999999999999999999997 99999999986
No 42
>1w4i_A Pyruvate dehydrogenase E2; transferase, peripheral-subunit binding domain, ultrafast folding, homologues,; NMR {Pyrobaculum aerophilum} PDB: 1w4j_A 1w4k_A
Probab=99.02 E-value=1.4e-10 Score=90.97 Aligned_cols=44 Identities=41% Similarity=0.698 Sum_probs=40.6
Q ss_pred ccccChhHHHHHHHcCCCCCcccccCCCCccchhhHHHHHHhcC
Q 010531 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASRG 297 (508)
Q Consensus 254 ~v~aSP~aRrLA~e~gIDLs~V~GTGp~GRItk~DV~~~~~~~~ 297 (508)
++++||+||+||+++||||+.|+|||++|||+++||+.|+....
T Consensus 4 ~~~asPaaRklA~e~gidl~~V~gtG~~GrItk~DV~~~~~~~~ 47 (62)
T 1w4i_A 4 EVAAMPAARRLAKELGIDLSKVKGTGPGGVITVEDVKRYAEETA 47 (62)
T ss_dssp SSEECHHHHHHHHHHTCCGGGSCCCSTTSEECHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHhCCChhhcCCCCCCCcccHHHHHHHHhccC
Confidence 46789999999999999999999999999999999999987543
No 43
>2f60_K Pyruvate dehydrogenase protein X component; protein-binding protein, E3BD, protein binding; 1.55A {Homo sapiens} PDB: 2f5z_K
Probab=99.02 E-value=7.7e-11 Score=93.04 Aligned_cols=43 Identities=35% Similarity=0.495 Sum_probs=40.1
Q ss_pred CccccChhHHHHHHHcCCCCCcccccCCCCccchhhHHHHHHh
Q 010531 253 DRLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLAS 295 (508)
Q Consensus 253 ~~v~aSP~aRrLA~e~gIDLs~V~GTGp~GRItk~DV~~~~~~ 295 (508)
.++.+||+||+||+++||||+.|+|||++|||+++||++|++.
T Consensus 8 ~~~~asPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~ 50 (64)
T 2f60_K 8 LRFRLSPAARNILEKHSLDASQGTATGPRGIFTKEDALKLVQL 50 (64)
T ss_dssp HHHHBCHHHHHHHHHTTCCGGGSCCCSGGGCBCHHHHHHHHHH
T ss_pred CCCCCCcHHHHHHHHcCCChhhcCCCCCCCcccHHHHHHHHhc
Confidence 3567899999999999999999999999999999999999864
No 44
>2coo_A Lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase...; E3_binding domain; NMR {Homo sapiens}
Probab=99.02 E-value=2.6e-10 Score=91.51 Aligned_cols=43 Identities=42% Similarity=0.739 Sum_probs=40.3
Q ss_pred ccccChhHHHHHHHcCCCCCcccccCCCCccchhhHHHHHHhc
Q 010531 254 RLFASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDYLASR 296 (508)
Q Consensus 254 ~v~aSP~aRrLA~e~gIDLs~V~GTGp~GRItk~DV~~~~~~~ 296 (508)
++++||+||+||+++||||+.|+|||++|||+++||++|+...
T Consensus 15 ~~~aSPaaRklA~e~gidl~~V~GTG~~GRItk~DV~~~~~~~ 57 (70)
T 2coo_A 15 KTLATPAVRRLAMENNIKLSEVVGSGKDGRILKEDILNYLEKQ 57 (70)
T ss_dssp SCCSCHHHHHHHHHHTCCGGGSCCCSTTSCCCHHHHHHHHHHH
T ss_pred ccccCcHHHHHHHHhCCCccccCCCCCCCceeHHHHHHHHhcc
Confidence 5678999999999999999999999999999999999998753
No 45
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=98.95 E-value=7.9e-11 Score=131.37 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=0.0
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
..|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+ .|.+|++|+++.
T Consensus 609 ~~G~v~~~~v~~Gd~V~~g~~l~~iEamK~~~~i~ap~~G~v~~i~~~~G~-~v~~g~~l~~i~ 671 (675)
T 3u9t_A 609 MNGSIVRVLVEPGQTVEAGATLVVLEAMKMEHSIRAPHAGVVKALYCSEGE-LVEEGTPLVELD 671 (675)
T ss_dssp ----------------------------------------------------------------
T ss_pred CCEEEEEEEeCCCCEEcCCCEEEEEEecceeEEEECCCCeEEEEEEeCCcC-CcCCCCEEEEEe
Confidence 459999999999999999999999999999999999999999999999997 999999999884
No 46
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=98.94 E-value=8.7e-10 Score=129.38 Aligned_cols=63 Identities=16% Similarity=0.275 Sum_probs=60.5
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
..|+|++|+|++||.|++||+|++||+||++++|+||.+|+|.++++++|+ .|.+|++|+.+.
T Consensus 1084 ~~G~v~~~~v~~Gd~V~~G~~l~~ieamK~~~~i~ap~~G~v~~i~v~~G~-~V~~g~~l~~i~ 1146 (1150)
T 3hbl_A 1084 MPGSVTEVKVSVGETVKANQPLLITEAMKMETTIQAPFDGVIKQVTVNNGD-TIATGDLLIEIE 1146 (1150)
T ss_dssp SSEEEEEECCCTTCEECTTCEEEEEESSSCEEEEECSSSEEEEEECCCTTC-EECTTBEEEEEC
T ss_pred ceEEEEEEEeCCCCEECCCCEEEEEEeccceeEEecCCCeEEEEEEeCCCC-EeCCCCEEEEEe
Confidence 359999999999999999999999999999999999999999999999997 999999999984
No 47
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=98.70 E-value=1.1e-08 Score=88.69 Aligned_cols=66 Identities=24% Similarity=0.322 Sum_probs=59.9
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecceee-----------------------------EEecCCCeEEEEEEecCCC
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATV-----------------------------EMECMEEGYLAKIVKGDGS 181 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~-----------------------------ei~ap~~G~v~~i~~~eG~ 181 (508)
..|.|.+|++++||.|++||+|+++++.++.. .|.||++|+|.++.+++|+
T Consensus 8 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~a~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~ 87 (116)
T 2k32_A 8 VSGVIVNKLFKAGDKVKKGQTLFIIEQDQASKDFNRSKALFSQSAISQKEYDSSLATLDHTEIKAPFDGTIGDALVNIGD 87 (116)
T ss_dssp SCEEEEEECSCTTSEECTTCEEEEEECTTTSHHHHHHHHHTGGGCCSTTTTTHHHHTTTEEEEECSSSEEECCCSCCTTC
T ss_pred CCEEEEEEECCCcCEECCCCEEEEECHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHhhcCCEEEcCCCEEEEEEECCCCC
Confidence 46999999999999999999999999986654 8999999999999999997
Q ss_pred eeeecC-CEEEEEeccC
Q 010531 182 KEIKVG-EVIAITVEEE 197 (508)
Q Consensus 182 ~~v~vG-~~la~i~~~~ 197 (508)
.|..| ++|+.+.+.+
T Consensus 88 -~v~~g~~~l~~i~~~~ 103 (116)
T 2k32_A 88 -YVSASTTELVRVTNLN 103 (116)
T ss_dssp -EECTTTSCCEEEECSC
T ss_pred -EEcCCCcEEEEEECCC
Confidence 99999 9999987643
No 48
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=98.64 E-value=7.2e-09 Score=115.98 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=59.3
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
.+|+|++|+|++||.|++||+|++||+||+.++|+||.+|+|.++++++|+ .|.+|++|+++
T Consensus 656 ~~G~V~~v~V~~Gd~V~~Gq~L~~iEamKme~~I~Ap~~G~V~~i~v~~G~-~V~~G~~L~~i 717 (718)
T 3bg3_A 656 MPGKVIDIKVVAGAKVAKGQPLCVLSAMKMETVVTSPMEGTVRKVHVTKDM-TLEGDDLILEI 717 (718)
T ss_dssp SCEEEEEECSCTTCCBCTTCCCEEEESSSCEEEECCCCCBCBCCCCCCSEE-EECSSCEEECB
T ss_pred CCeEEEEEEeCCCCeeCCCCEEEEEecccceeEEecCCCeEEEEEecCCCC-EeCCCCEEEEe
Confidence 369999999999999999999999999999999999999999999999997 99999999865
No 49
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=98.61 E-value=1.9e-08 Score=118.34 Aligned_cols=62 Identities=24% Similarity=0.471 Sum_probs=53.6
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
..|+|.+|+|++||.|++||+|++||+||++++|+||.+|+|.++.+++|+ .|.+|++|+++
T Consensus 1102 ~~G~v~~~~v~~Gd~V~~G~~l~~iEamKme~~i~Ap~~G~V~~i~v~~G~-~V~~g~~l~~i 1163 (1165)
T 2qf7_A 1102 MPGVISRVFVSSGQAVNAGDVLVSIEAMKMETAIHAEKDGTIAEVLVKAGD-QIDAKDLLAVY 1163 (1165)
T ss_dssp SCEEEEEECCSSCCCC---CEEEEEEC---CEEEECCSSCCCCEECCCSSC-EECTTBEEEEC
T ss_pred CCeEEEEEEcCCcCEeCCCCEEEEEEcccceEEEEcCCCEEEEEEEeCCCC-EECCCCEEEEe
Confidence 359999999999999999999999999999999999999999999999997 89999999876
No 50
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=98.53 E-value=8.4e-08 Score=86.49 Aligned_cols=55 Identities=22% Similarity=0.299 Sum_probs=50.3
Q ss_pred ccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEE---EecCCCeeee---cCC-EEEEEec
Q 010531 140 KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKI---VKGDGSKEIK---VGE-VIAITVE 195 (508)
Q Consensus 140 v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i---~~~eG~~~v~---vG~-~la~i~~ 195 (508)
+++||.|++||+||+||++|+..+|.||.+|+|.++ ++++|+ .|. -|+ .|+.+..
T Consensus 53 p~vGd~V~~Gd~l~~VEs~K~~~eI~aPvsG~V~eiN~~l~~~p~-~Vn~dp~g~GwL~~i~~ 114 (136)
T 1zko_A 53 PEVGREVKKGEVVASIESVKAAADVYAPLSGKIVEVNEKLDTEPE-LINKDPEGEGWLFKMEI 114 (136)
T ss_dssp CCTTCEECTTCEEEEEEESSCEEEEECSSCEEEEEECGGGGTCTT-HHHHCTTTTTCCEEEEE
T ss_pred cCCCCEEeCCCEEEEEEEccEeEEEecCCCeEEEEEehhhccCcc-CcccCCCCCeEEEEEEE
Confidence 499999999999999999999999999999999999 888997 888 888 8887753
No 51
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=98.14 E-value=1.1e-06 Score=78.76 Aligned_cols=54 Identities=20% Similarity=0.183 Sum_probs=43.8
Q ss_pred EecCCCCCCCCeEEEEEEE-ccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCC
Q 010531 121 IGMPSLSPTMQEGNIARWL-KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDG 180 (508)
Q Consensus 121 i~mP~lg~~~~eg~I~~W~-v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG 180 (508)
+.+|.+|+ |+... .++||.|++||+||+||++|+..+|.||.+|+|.++..+.+
T Consensus 30 ~a~~~lG~------i~~v~lp~~G~~V~~g~~l~~vEs~K~~~~I~aPvsG~V~evn~~l~ 84 (131)
T 1hpc_A 30 HAQDHLGE------VVFVELPEPGVSVTKGKGFGAVESVKATSDVNSPISGEVIEVNTGLT 84 (131)
T ss_dssp HHHHHHCS------EEEEECCCTTCEECBTSEEEEEEESSCEEEEEBSSCEEEEEECTHHH
T ss_pred hhcccCCC------ceEEEecCCCCEEeCCCEEEEEEecceeEEEecCCCeEEEEEhhhhh
Confidence 34455554 44443 49999999999999999999999999999999999975444
No 52
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E*
Probab=98.13 E-value=2.3e-06 Score=76.27 Aligned_cols=55 Identities=18% Similarity=0.151 Sum_probs=44.7
Q ss_pred EecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCC
Q 010531 121 IGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDG 180 (508)
Q Consensus 121 i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG 180 (508)
+.+|.||+ +...++ .++||.|++||+||+||++|+..+|.||.+|+|.++..+.+
T Consensus 31 ~a~~~lG~-i~~v~l----p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evN~~l~ 85 (128)
T 3a7l_A 31 HAQELLGD-MVFVDL----PEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALS 85 (128)
T ss_dssp HHHHHHCS-EEEEEC----CCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGGG
T ss_pred HHhccCCc-eEEEEe----cCCCCEEeCCCEEEEEEecceeeEEecCCCeEEEEEhhhhc
Confidence 44556665 444333 59999999999999999999999999999999999976544
No 53
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1
Probab=98.08 E-value=3.4e-06 Score=75.19 Aligned_cols=68 Identities=18% Similarity=0.168 Sum_probs=50.3
Q ss_pred EecCCCCCCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEec---CCCeee---ecCC-EEEEE
Q 010531 121 IGMPSLSPTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKG---DGSKEI---KVGE-VIAIT 193 (508)
Q Consensus 121 i~mP~lg~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~---eG~~~v---~vG~-~la~i 193 (508)
+.+|.||+ +...++ .++||.|++||+||+||++|+..+|.||.+|+|.++... ..+ .| +-|+ -|+.+
T Consensus 30 ~a~~~lG~-i~~v~l----p~vG~~V~~g~~l~~vEs~K~~~~i~aPvsG~V~evn~~l~~~P~-lvn~dpy~~gWl~~i 103 (128)
T 1onl_A 30 YAQDALGD-VVYVEL----PEVGRVVEKGEAVAVVESVKTASDIYAPVAGEIVEVNLALEKTPE-LVNQDPYGEGWIFRL 103 (128)
T ss_dssp HHHHHHCS-EEEEEC----BCTTCEECTTCEEEEEEESSBEEEEECSSSEEEEEECTHHHHCTT-HHHHCTTTTTCCEEE
T ss_pred HHhhcCCC-ceEEEe----cCCCCEEeCCCEEEEEEEcceeeEEecCCCeEEEEEhhhhccChh-hhccCCCCCccEEEE
Confidence 34555655 444333 599999999999999999999999999999999999654 332 33 4455 55555
Q ss_pred e
Q 010531 194 V 194 (508)
Q Consensus 194 ~ 194 (508)
.
T Consensus 104 ~ 104 (128)
T 1onl_A 104 K 104 (128)
T ss_dssp E
T ss_pred E
Confidence 3
No 54
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=97.69 E-value=4.7e-05 Score=79.79 Aligned_cols=65 Identities=20% Similarity=0.261 Sum_probs=57.7
Q ss_pred CeEEEEEEEc-cCCCeeCCCCeEEEEEec------------------------------------------------cee
Q 010531 131 QEGNIARWLK-KEGDKVSPGEVLCEVETD------------------------------------------------KAT 161 (508)
Q Consensus 131 ~eg~I~~W~v-~~Gd~V~~gd~L~eVetd------------------------------------------------Ka~ 161 (508)
..|.|.+++| ++||.|++||+|+++++. ...
T Consensus 128 ~~G~V~~v~V~~~Gd~VkkGq~L~~ld~~~l~~aq~~~~~a~~~~~~~~~~~~a~~~l~~~~~~~~~~~~l~~~~~~~~~ 207 (413)
T 3ne5_B 128 AAGFIDKVYPLTVGDKVQKGTPLLDLTIPDWVEAQSEYLLLRETGGTATQTEGILERLRLAGMPEADIRRLIATQKIQTR 207 (413)
T ss_dssp SCEEEEEECSCCTTCEECTTCEEEEEECCSSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCHHHHHHHHHHTSCCCE
T ss_pred cCEEEEEEEeCCCCCEEcCCCEEEEEcCHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccc
Confidence 4699999998 999999999999999952 234
Q ss_pred eEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 162 ~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
..|.||++|+|.++.+.+|+ .|..|++|+.+.+.
T Consensus 208 ~~I~AP~~G~V~~~~v~~G~-~V~~G~~l~~I~~~ 241 (413)
T 3ne5_B 208 FTLKAPIDGVITAFDLRAGM-NIAKDNVVAKIQGM 241 (413)
T ss_dssp EEEECSSSEEEEECCCCTTC-EECTTSCSEEEEEE
T ss_pred EEEEcCCCeEEEEEEcCCCC-EECCCCcEEEEeCC
Confidence 68999999999999999997 99999999988753
No 55
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=97.68 E-value=4e-05 Score=78.02 Aligned_cols=65 Identities=17% Similarity=0.275 Sum_probs=57.8
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecce--------------------------------------------------
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA-------------------------------------------------- 160 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa-------------------------------------------------- 160 (508)
..|.|.++++++||.|++||+|+++++...
T Consensus 64 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~l~~a~~~l~~a~a~l~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~a~a 143 (359)
T 3lnn_A 64 LAGRIVSLNKQLGDEVKAGDVLFTIDSADLAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAAS 143 (359)
T ss_dssp SCEEEEECCSCTTCEECTTCEEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSCCCCTTHHHHHHHHHHHHH
T ss_pred CCEEEEEEEcCCCCEEcCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 359999999999999999999999997532
Q ss_pred --------------------------eeEEecCCCeEEEEEEecCCCeeeec-CCEEEEEecc
Q 010531 161 --------------------------TVEMECMEEGYLAKIVKGDGSKEIKV-GEVIAITVEE 196 (508)
Q Consensus 161 --------------------------~~ei~ap~~G~v~~i~~~eG~~~v~v-G~~la~i~~~ 196 (508)
...|.||++|+|.++.+.+|+ .|.. |++|+.+.+.
T Consensus 144 ~l~~a~~~l~~~~~~~~~~~~~~~~~~~~i~AP~~G~V~~~~~~~G~-~v~~~g~~l~~i~~~ 205 (359)
T 3lnn_A 144 ESQRADARLAQLGAKGGGTLQAGGGHILAVRSPINGRVVDLNAATGA-YWNDTTASLMTVADL 205 (359)
T ss_dssp HHHHHHHHHHHHHHHHGGGBCSSTTSEEEEECSSCEEEEECCCCBTC-EECCSSCCSEEEECC
T ss_pred HHHHHHHHHHHhcCCcchhhhhcccceEEEECCCCEEEEEeecCCCc-eeCCCCcceEEEecC
Confidence 357999999999999999997 8998 9999988754
No 56
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=97.64 E-value=1.4e-05 Score=78.68 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=56.8
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecc---------------------------------------------------
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK--------------------------------------------------- 159 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdK--------------------------------------------------- 159 (508)
..|.|.++++++||.|++||+|+++++..
T Consensus 29 ~~G~V~~v~v~~G~~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~a~l~~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~ 108 (277)
T 2f1m_A 29 VSGIILKRNFKEGSDIEAGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGTQYISKQEYDQALADAQ 108 (277)
T ss_dssp SCEEEEEECSCTTCEECTTSCSEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSTTCCHHHHHHHHHHHH
T ss_pred ccEEEEEEEcCCCCEecCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 35999999999999999999999998742
Q ss_pred --------------------eeeEEecCCCeEEEEEEecCCCeeeecC--CEEEEEecc
Q 010531 160 --------------------ATVEMECMEEGYLAKIVKGDGSKEIKVG--EVIAITVEE 196 (508)
Q Consensus 160 --------------------a~~ei~ap~~G~v~~i~~~eG~~~v~vG--~~la~i~~~ 196 (508)
....|.||++|+|..+.+.+|+ .|..| ++|+.+.+.
T Consensus 109 ~a~a~l~~a~a~l~~a~~~l~~~~I~AP~~G~V~~~~~~~G~-~v~~g~~~~l~~i~~~ 166 (277)
T 2f1m_A 109 QANAAVTAAKAAVETARINLAYTKVTSPISGRIGKSNVTEGA-LVQNGQATALATVQQL 166 (277)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTEECCSSCEEECCCSSCBTC-EECTTCSSCSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEeEEcCCCC-EEcCCCCceeEEEecC
Confidence 1247999999999999999997 99999 589988754
No 57
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=97.60 E-value=4.8e-05 Score=76.92 Aligned_cols=65 Identities=15% Similarity=0.234 Sum_probs=56.2
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecc---------------------------------------------------
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDK--------------------------------------------------- 159 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdK--------------------------------------------------- 159 (508)
..|.|.++++++||.|++||+|+++++.-
T Consensus 38 ~~G~V~~v~v~~G~~V~kG~~L~~ld~~~~~~~~~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 117 (341)
T 3fpp_A 38 VSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLD 117 (341)
T ss_dssp SCEEEEEECCCTTCEECTTCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTSSSTTHHHH
T ss_pred CCcEEEEEEeCCCCEECCCCEEEEEChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHH
Confidence 45999999999999999999999999742
Q ss_pred ----------------------------------eeeEEecCCCeEEEEEEecCCCeeeecCCE---EEEEecc
Q 010531 160 ----------------------------------ATVEMECMEEGYLAKIVKGDGSKEIKVGEV---IAITVEE 196 (508)
Q Consensus 160 ----------------------------------a~~ei~ap~~G~v~~i~~~eG~~~v~vG~~---la~i~~~ 196 (508)
....|.||++|+|.++.+.+|+ .|..|++ |+.+.+.
T Consensus 118 ~a~~~~~~~~a~l~~~~a~l~~a~a~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~-~v~~g~~~~~l~~i~~~ 190 (341)
T 3fpp_A 118 NAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQ-TVIAAQQAPNILTLADM 190 (341)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHHTHHHHTTTTTTTTSSEEECSSSEEEEEESSCTTC-EECCTTSCCCCEEEECC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCEEECCCCeEEEEEecCCCC-EEecCCCCceEEEEecC
Confidence 1145999999999999999997 9999987 8877653
No 58
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A
Probab=97.49 E-value=0.00015 Score=64.35 Aligned_cols=47 Identities=23% Similarity=0.242 Sum_probs=40.2
Q ss_pred EEEEEEEc-cCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecC
Q 010531 133 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGD 179 (508)
Q Consensus 133 g~I~~W~v-~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~e 179 (508)
|.|+..-. ++|+.|++||+++.||++|+..+|.||.+|+|.++...-
T Consensus 32 Gdiv~velp~vG~~v~~G~~~~~VES~K~~sdi~aPvsG~VvevN~~l 79 (125)
T 3klr_A 32 GDVVYCSLPEVGTKLNKQEEFGALESVKAASELYSPLSGEVTEINKAL 79 (125)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGGG
T ss_pred CCeEEEEeCCCCCEEcCCCEEEEEEEcceeeeeecCCCEEEEEEhhhh
Confidence 45555544 799999999999999999999999999999999985443
No 59
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae}
Probab=97.35 E-value=0.00026 Score=64.03 Aligned_cols=46 Identities=24% Similarity=0.308 Sum_probs=38.8
Q ss_pred EEEEEEEc-cCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEec
Q 010531 133 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKG 178 (508)
Q Consensus 133 g~I~~W~v-~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~ 178 (508)
|.|+..-. ++|+.|++||+++.||+.|+..+|.||.+|+|.++...
T Consensus 54 GdIvfVelP~vG~~v~~Gd~~~~VES~Ka~sdi~sPvsG~VvevN~~ 100 (143)
T 3mxu_A 54 GDLVFIDLPQNGTKLSKGDAAAVVESVKAASDVYAPLDGEVVEINAA 100 (143)
T ss_dssp CSEEEEECCCTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEECGG
T ss_pred CCeEEEEcCCCCCEeeCCCEEEEEEecceeeeeecCcceEEEEEhhh
Confidence 34444333 88999999999999999999999999999999988543
No 60
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum}
Probab=97.29 E-value=0.00028 Score=63.48 Aligned_cols=44 Identities=25% Similarity=0.368 Sum_probs=38.3
Q ss_pred EEEEEEEc-cCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEE
Q 010531 133 GNIARWLK-KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (508)
Q Consensus 133 g~I~~W~v-~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~ 176 (508)
|.|+..-. ++|+.|++||.++.||++|+..+|.||.+|+|.++.
T Consensus 49 Gdiv~VelP~vG~~v~~G~~~~~VES~K~~sdi~sPvsG~VvevN 93 (137)
T 3tzu_A 49 GDLVFVQLPEVGETVSAGESCGEVESTKTVSDLIAPASGQIVEVN 93 (137)
T ss_dssp CSEEEEECCCTTCEECTTSEEEEEEESSEEEEEECSEEEEEEEEC
T ss_pred CCeEEEEcCCCCCEEeCCCEEEEEEecceeeeeecCcceEEEEeh
Confidence 44544433 899999999999999999999999999999999984
No 61
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=97.29 E-value=7.3e-05 Score=76.96 Aligned_cols=65 Identities=20% Similarity=0.304 Sum_probs=56.5
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecce--------------------------------------------------
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA-------------------------------------------------- 160 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa-------------------------------------------------- 160 (508)
..|.|.++++++||.|++||+|+++++...
T Consensus 50 v~G~V~~v~v~~Gd~V~kGq~L~~ld~~~~~~~l~~a~a~l~~a~~~~~R~~~L~~~g~is~~~~~~a~~~~~~a~a~l~ 129 (369)
T 1vf7_A 50 VNGIILKRLFKEGSDVKAGQQLYQIDPATYEADYQSAQANLASTQEQAQRYKLLVADQAVSKQQYADANAAYLQSKAAVE 129 (369)
T ss_dssp SCEEEEECCSCSSEEECTTSEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEcCCCCEEcCCCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 359999999999999999999999986421
Q ss_pred -------eeEEecCCCeEEEEEEecCCCeeeecC--CEEEEEecc
Q 010531 161 -------TVEMECMEEGYLAKIVKGDGSKEIKVG--EVIAITVEE 196 (508)
Q Consensus 161 -------~~ei~ap~~G~v~~i~~~eG~~~v~vG--~~la~i~~~ 196 (508)
...|.||++|+|.++.+++|+ .|..| ++|+.+.+.
T Consensus 130 ~a~~~l~~~~I~AP~~G~V~~~~v~~G~-~V~~g~g~~l~~i~~~ 173 (369)
T 1vf7_A 130 QARINLRYTKVLSPISGRIGRSAVTEGA-LVTNGQANAMATVQQL 173 (369)
T ss_dssp HHHHHHHTTEEECSSSEEECCCSSCBTC-EECTTCSSCSEEEECC
T ss_pred HHHHhhcCCEEECCCCeEEEEEEcCCCC-eEcCCCCceeEEEecC
Confidence 247999999999999999997 99995 899988653
No 62
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A
Probab=96.97 E-value=0.00085 Score=61.42 Aligned_cols=36 Identities=25% Similarity=0.376 Sum_probs=34.6
Q ss_pred cCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEE
Q 010531 141 KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIV 176 (508)
Q Consensus 141 ~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~ 176 (508)
++|+.|++||+++.||+.|+..+|.||.+|+|.++.
T Consensus 68 ~vG~~v~~Gd~~~~VESvKa~sdi~sPvsG~VvevN 103 (155)
T 3hgb_A 68 VIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVN 103 (155)
T ss_dssp CTTCEECTTCEEEEEEESSCEEEEECSSSEEEEEEC
T ss_pred CCCCEEeCCCEEEEEEecceeeeeecCcceEEEEEh
Confidence 799999999999999999999999999999999875
No 63
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=96.68 E-value=8e-05 Score=76.00 Aligned_cols=63 Identities=17% Similarity=0.355 Sum_probs=53.6
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecce--------------------------------------------------
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKA-------------------------------------------------- 160 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa-------------------------------------------------- 160 (508)
..|.|.++++++||.|++||+|+++++...
T Consensus 39 ~~G~V~~v~v~~G~~V~~Gq~L~~ld~~~~~~~l~~~~a~l~~~~a~l~~a~~~~~~a~~~~~r~~~L~~~~~~s~~~~~ 118 (369)
T 4dk0_A 39 VSGKITKLYVKLGQQVKKGDLLAEIDSTTQINTLNTRKAALASYQAQLVARKTAYDVALSNYQRLSKLYGQKATSLDTLN 118 (369)
T ss_dssp SCSBCCEECCCTTSCCCSSCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHGGGSSCSCGGGHH
T ss_pred CCcEEEEEEECCCCEECCCCEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHH
Confidence 358999999999999999999999987521
Q ss_pred -----------------------------------eeEEecCCCeEEEEEEecCCCeeeecCCE---EEEEe
Q 010531 161 -----------------------------------TVEMECMEEGYLAKIVKGDGSKEIKVGEV---IAITV 194 (508)
Q Consensus 161 -----------------------------------~~ei~ap~~G~v~~i~~~eG~~~v~vG~~---la~i~ 194 (508)
...|.||++|+|.++.+.+|+ .|..|++ |+.+.
T Consensus 119 ~a~~~~~~a~a~~~~~~~~l~~~~~~l~~a~~~l~~~~i~AP~~G~V~~~~~~~G~-~v~~g~~~~~l~~i~ 189 (369)
T 4dk0_A 119 TAKATLNNAKAEMDVVQENIKQAEIEVNTAETNLGYTKITSPIDGTVISTPVSEGQ-TVNSNQTTPTIIKVA 189 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCCSCCSCCCBCCCCTTC-BCCTTTSCCCCBBCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCEEECCCCeEEEEeeCCCCC-CccCCCCcceEEEEc
Confidence 134999999999999999997 9999998 55543
No 64
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=96.37 E-value=0.0086 Score=61.05 Aligned_cols=61 Identities=21% Similarity=0.241 Sum_probs=50.4
Q ss_pred EEEEEEEccCCCeeCCCCeEEEEEe----cceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 133 GNIARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 133 g~I~~W~v~~Gd~V~~gd~L~eVet----dKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
+=+.+.+++.||.|++||+|++|.. .....+|.||.+|+|.... ..- .|..|+.|+.+...
T Consensus 265 ~Gl~~~~v~~Gd~V~~G~~la~I~dp~~~g~~~~~v~Ap~dGiVi~~~--~~~-~V~~G~~l~~Ia~~ 329 (331)
T 3na6_A 265 DGLFEIMIDLGEPVQEGDLVARVWSPDRTGEAPVEYRARRSGVLISRH--FPG-MIKSGDCAAVIGVV 329 (331)
T ss_dssp CEEEEESSCTTCEECTTCEEEEEECSSCSSCCCEEEECSSSEEEEEEE--CSS-EECTTCEEEEEECB
T ss_pred CeEEEEcCCCCCEEcCCCEEEEEEcCccCCCeeEEEEcCCCEEEEEEe--CCC-ccCCCCEEEEEecc
Confidence 3477779999999999999999996 3567899999999997654 343 69999999998643
No 65
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=96.10 E-value=0.015 Score=59.76 Aligned_cols=59 Identities=19% Similarity=0.261 Sum_probs=51.1
Q ss_pred EEEEEccCCCeeCCCCeEEEEEe----cceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 135 IARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 135 I~~W~v~~Gd~V~~gd~L~eVet----dKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
+.+..++.||.|++||+|++|+. .+...+|.||.+|+|..+ .... .|..|+.|+.+...
T Consensus 277 ~~~~~~~~g~~V~~G~~La~i~d~~~~g~~~~~v~Ap~dG~v~~~--~~~~-~V~~Gd~l~~ia~~ 339 (354)
T 3cdx_A 277 LFEPTHYVGEEVRTGETAGWIHFVEDVDTAPLELLYRRDGIVWFG--AGPG-RVTRGDAVAVVMED 339 (354)
T ss_dssp EEEESCCTTCEECTTSEEEEEECTTSSSCCCEEEECCSCEEEEEE--ECSS-EECTTCEEEEEEEE
T ss_pred EEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEcCCCeEEEEE--eCCC-ccCCCCEEEEEeee
Confidence 77888999999999999999997 488899999999999865 4665 79999999988643
No 66
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=96.05 E-value=0.015 Score=60.10 Aligned_cols=60 Identities=12% Similarity=0.144 Sum_probs=50.1
Q ss_pred EEEEEEEccCCCeeCCCCeEEEEEe------cceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 133 GNIARWLKKEGDKVSPGEVLCEVET------DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 133 g~I~~W~v~~Gd~V~~gd~L~eVet------dKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
+=|.+.+++.||.|++||+|++|-. .....+|.||.+|+|.-. ...- .|..|+.|+.+..
T Consensus 298 ~Gl~~~~v~lGd~V~kG~~la~I~d~~~~g~g~~~~~v~Ap~dGiVi~~--~~~p-~V~~G~~l~~i~~ 363 (368)
T 3fmc_A 298 AGMVEYLGKVGVPMKATDPLVNLLRLDLYGTGEELTVLRLPEDGVPILH--FASA-SVHQGTELYKVMT 363 (368)
T ss_dssp CEEEEECSCTTCCBCTTCEEEEEECGGGTTSSCSEEEEECSSSEEEEEE--CSSS-EECTTCEEEEEEE
T ss_pred CEEEEEeCCCCCEeCCCCEEEEEEcCCCCCCCCeeEEEEcCCCEEEEEE--eCCC-ccCCCCEEEEEee
Confidence 3456789999999999999999997 457789999999999754 3444 7999999998754
No 67
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.56 E-value=0.0045 Score=52.06 Aligned_cols=46 Identities=17% Similarity=0.264 Sum_probs=40.9
Q ss_pred CCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 149 GEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 149 gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
|..+|.++..+-...|.||.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 5 ~g~~~~~~~~~~~~~v~a~~~G~v~~~~v~~Gd-~V~~Gq~L~~le~ 50 (100)
T 2dn8_A 5 SSGTCVFEKENDPTVLRSPSAGKLTQYTVEDGG-HVEAGSSYAEMEV 50 (100)
T ss_dssp CCCCCCCCCCCCTTEEECSSCEEEEEESSCTTE-EECTTCEEEEEEE
T ss_pred CCEEEEEEcCCCCcEEeCCCCEEEEEEEcCCcC-EECCCCEEEEEEe
Confidence 455688888888889999999999999999997 9999999999853
No 68
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A*
Probab=94.74 E-value=0.028 Score=43.53 Aligned_cols=32 Identities=25% Similarity=0.310 Sum_probs=29.1
Q ss_pred EEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 163 EMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 163 ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
+|.||.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 1 ~v~a~~~G~v~~~~v~~G~-~V~~G~~l~~i~~ 32 (72)
T 1z6h_A 1 TVSIQMAGNLWKVHVKAGD-QIEKGQEVAILES 32 (72)
T ss_dssp CEECCSSEEEEEECCCTTC-EECTTCEEEEEEE
T ss_pred CEECcccEEEEEEEcCCcC-EECCCCEEEEEEC
Confidence 3789999999999999997 9999999999854
No 69
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A
Probab=94.67 E-value=0.033 Score=43.84 Aligned_cols=34 Identities=21% Similarity=0.369 Sum_probs=30.7
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 161 ~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
...|.||.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 8 ~~~v~a~~~G~v~~~~v~~G~-~V~~G~~L~~l~~ 41 (77)
T 1dcz_A 8 EGEIPAPLAGTVSKILVKEGD-TVKAGQTVLVLEA 41 (77)
T ss_dssp SSEEEBSSSCEEEEECCCTTC-EECTTSEEEEEEE
T ss_pred CeEEECCCCEEEEEEEcCCcC-EEcCCCEEEEEEc
Confidence 357899999999999999997 9999999999854
No 70
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A
Probab=94.47 E-value=0.045 Score=42.46 Aligned_cols=33 Identities=12% Similarity=0.240 Sum_probs=30.0
Q ss_pred eEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 162 ~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
..|.||.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 6 ~~v~a~~~G~v~~~~v~~G~-~V~~G~~l~~i~~ 38 (74)
T 2d5d_A 6 NVVSAPMPGKVLRVLVRVGD-RVRVGQGLLVLEA 38 (74)
T ss_dssp CEEECSSCEEEEEECCCTTC-EECTTCEEEEEEE
T ss_pred eEEecCCCEEEEEEEcCCCC-EeCCCCEEEEEec
Confidence 46889999999999999997 9999999999854
No 71
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=94.17 E-value=0.12 Score=52.35 Aligned_cols=60 Identities=17% Similarity=0.169 Sum_probs=48.6
Q ss_pred EEEEEEEccCCCeeCCCCeEEEEEe----cceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 133 GNIARWLKKEGDKVSPGEVLCEVET----DKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 133 g~I~~W~v~~Gd~V~~gd~L~eVet----dKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
+-+...+++.||.|++||+|++|-. .....+|.||.+|+|.-.. ..- .|..|+.|+.+..
T Consensus 265 ~G~~~~~~~~g~~V~~G~~la~i~dp~~~G~~~~~v~Ap~dGiv~~~~--~~p-~V~~Gd~l~~ia~ 328 (332)
T 2qj8_A 265 PGIFEPRCSVMDEVEQGDVVGVLHPMGSLSAASIDIRAQSKSTVFAIR--SAM-YVQGNEEVAILAR 328 (332)
T ss_dssp SEEEEECSCTTCEECTTCEEEEEECTTCSSSCCEEEECSSSEEEEEEE--CSE-EECTTCEEEEEEE
T ss_pred CeEEEEeCCCCCEeCCCCEEEEEECCCCCCCeeEEEEeCCCeEEEEEe--CCC-eeCCCCEEEEEee
Confidence 4455688899999999999999964 4677889999999997553 443 7999999998754
No 72
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A*
Probab=94.05 E-value=0.049 Score=46.45 Aligned_cols=33 Identities=18% Similarity=0.281 Sum_probs=30.5
Q ss_pred eEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 162 ~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
+.|.|+.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 2 ~~v~a~~~G~V~~v~v~~G~-~V~~Gq~L~~ld~ 34 (116)
T 2k32_A 2 VIIKPQVSGVIVNKLFKAGD-KVKKGQTLFIIEQ 34 (116)
T ss_dssp EEECCSSCEEEEEECSCTTS-EECTTCEEEEEEC
T ss_pred eEEeCcCCEEEEEEECCCcC-EECCCCEEEEECH
Confidence 67999999999999999997 9999999999854
No 73
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens}
Probab=92.99 E-value=0.052 Score=44.00 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=30.5
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 161 ~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
...|.||.+|+|.++++++|+ .|..|++|+.+..
T Consensus 5 ~~~v~a~~~G~v~~~~v~~Gd-~V~~G~~l~~ie~ 38 (84)
T 2kcc_A 5 PTVLRSPSAGKLTQYTVEDGG-HVEAGSSYAEMEV 38 (84)
T ss_dssp TTEECCSSSCCEEEESSCTTE-EECTTCEEEEEEC
T ss_pred CceEECCCCEEEEEEECCCCC-EECCCCEEEEEEe
Confidence 347999999999999999997 9999999999853
No 74
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=92.30 E-value=0.12 Score=47.60 Aligned_cols=58 Identities=24% Similarity=0.332 Sum_probs=49.8
Q ss_pred CeEEEEEEEccCCCeeCC----CCeEEEEEecceeeEEecCCCeEEEEE-------------------------------
Q 010531 131 QEGNIARWLKKEGDKVSP----GEVLCEVETDKATVEMECMEEGYLAKI------------------------------- 175 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~----gd~L~eVetdKa~~ei~ap~~G~v~~i------------------------------- 175 (508)
-.|+|...- ++.|.|-. |+-++...++ ..+.||++|+|..+
T Consensus 19 ~~G~vv~l~-~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHiGidTV~l~G~ 94 (161)
T 1f3z_A 19 LSGEIVNIE-DVPDVVFAEKIVGDGIAIKPTG---NKMVAPVDGTIGKIFETNHAFSIESDSGVELFVHFGIDTVELKGE 94 (161)
T ss_dssp SCEEEEEGG-GSSSHHHHTTSSCEEEEEEECS---SEEECSSSEEEEEECTTSSEEEEEETTSCEEEEECSBSGGGGTTT
T ss_pred CCeEEEEeE-ECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEeCCCCEEEEEECccchhcCCC
Confidence 468998865 78888766 8999988877 47899999999988
Q ss_pred ----EecCCCeeeecCCEEEEE
Q 010531 176 ----VKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 176 ----~~~eG~~~v~vG~~la~i 193 (508)
++++|| .|+.|++|+.+
T Consensus 95 gF~~~V~~Gd-~V~~G~~L~~~ 115 (161)
T 1f3z_A 95 GFKRIAEEGQ-RVKVGDTVIEF 115 (161)
T ss_dssp TEEECSCTTC-EECTTCEEEEE
T ss_pred ccEEEEeCcC-EECCCCEEEEE
Confidence 789997 89999999987
No 75
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=91.94 E-value=0.13 Score=49.95 Aligned_cols=52 Identities=17% Similarity=0.089 Sum_probs=38.4
Q ss_pred cCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 141 KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 141 ~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
+.|+.-..=..-+.|+.. -.+.|.++.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 3 ~~~~~~~~v~~~G~v~~~-~~~~v~a~~~G~V~~v~v~~G~-~V~kGq~L~~ld 54 (277)
T 2f1m_A 3 KTEPLQITTELPGRTSAY-RIAEVRPQVSGIILKRNFKEGS-DIEAGVSLYQID 54 (277)
T ss_dssp -------CCEEEEEEECS-EEEEECCSSCEEEEEECSCTTC-EECTTSCSEEEC
T ss_pred eeeccceEEEEEEEEEee-eEEEEEccccEEEEEEEcCCCC-EecCCCEEEEEC
Confidence 344444444556778865 4678999999999999999997 999999999984
No 76
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=91.47 E-value=0.14 Score=48.33 Aligned_cols=32 Identities=16% Similarity=0.362 Sum_probs=27.1
Q ss_pred EEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEE
Q 010531 137 RWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAK 174 (508)
Q Consensus 137 ~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~ 174 (508)
..+|++|+.|++||.||+-. .|-+..+|+|.+
T Consensus 22 ~L~V~dG~~VkkG~~laeWD------PIitE~~G~V~d 53 (193)
T 2xha_A 22 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVD 53 (193)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred EEEECCCCEEcCCCEEEEeC------cEEEccCEEEEe
Confidence 57899999999999999765 788888888754
No 77
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=91.11 E-value=0.3 Score=44.93 Aligned_cols=48 Identities=19% Similarity=0.146 Sum_probs=41.9
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEecceeeE-EecCCCeEEEEEEec
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETDKATVE-MECMEEGYLAKIVKG 178 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~e-i~ap~~G~v~~i~~~ 178 (508)
.||.-+--.+.+||.|.+||.|+-|.|-|-.+- +.||++|+|.=+.-.
T Consensus 107 aeG~~V~~i~~~G~rV~kgd~lA~i~T~KGEVR~i~spv~G~Vv~v~e~ 155 (169)
T 3d4r_A 107 AEGYKVYPIMDFGFRVLKGYRLATLESKKGDLRYVNSPVSGTVIFMNEI 155 (169)
T ss_dssp ECSSEEEECCCCSEEECTTCEEEEEECTTCCEEEEECSSSEEEEEEEEE
T ss_pred eCceEEEEEcCcCcEeccCCeEEEEEecCceEEEecCCCcEEEEEEEec
Confidence 356667778999999999999999999999998 999999999876543
No 78
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens}
Probab=91.11 E-value=0.15 Score=42.48 Aligned_cols=34 Identities=15% Similarity=0.278 Sum_probs=30.3
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 161 ~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
...|.||.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 14 ~~~v~a~~~G~v~~~~v~~Gd-~V~~Gq~L~~ie~ 47 (99)
T 2ejm_A 14 QGGPLAPMTGTIEKVFVKAGD-KVKAGDSLMVMIA 47 (99)
T ss_dssp CSSCBCSSSEEEEEECCCTTE-EECSSCEEEEEES
T ss_pred ceEEecCCCEEEEEEECCCCC-EECCCCEEEEEEc
Confidence 346899999999999999997 9999999999854
No 79
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=90.72 E-value=0.18 Score=46.06 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=49.1
Q ss_pred CeEEEEEEEccCCCeeCC----CCeEEEEEecceeeEEecCCCeEEEE--------------------------------
Q 010531 131 QEGNIARWLKKEGDKVSP----GEVLCEVETDKATVEMECMEEGYLAK-------------------------------- 174 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~----gd~L~eVetdKa~~ei~ap~~G~v~~-------------------------------- 174 (508)
-.|+|... -++.|.|-. |+-++...++ -.+.||++|+|..
T Consensus 14 ~~G~vv~l-~~v~D~vf~~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~HAigi~~~~G~evLiHiGidTv~l~G~ 89 (154)
T 2gpr_A 14 CDGTIITL-DEVEDEVFKERMLGDGFAINPKS---NDFHAPVSGKLVTAFPTKHAFGIQTKSGVEILLHIGLDTVSLDGN 89 (154)
T ss_dssp SSEEEECG-GGSSCHHHHTTSSCEEEEEEESS---SEEECSSCEEEEECCTTCSEEEEECTTSCEEEEECSSSGGGGTTC
T ss_pred CCeEEEEe-eECCCccccccceeCeEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECcchhhcCCC
Confidence 45888886 488888766 8999988876 4899999999997
Q ss_pred ---EEecCCCeeeecCCEEEEE
Q 010531 175 ---IVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 175 ---i~~~eG~~~v~vG~~la~i 193 (508)
+++++|| .|+.|++|+.+
T Consensus 90 gF~~~V~~Gd-~V~~G~~L~~~ 110 (154)
T 2gpr_A 90 GFESFVTQDQ-EVNAGDKLVTV 110 (154)
T ss_dssp SEEECCCTTC-EECTTCEEEEE
T ss_pred ceEEEEcCCC-EEcCCCEEEEE
Confidence 4789997 89999999987
No 80
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens}
Probab=90.59 E-value=0.1 Score=43.16 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=30.4
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 161 ~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
...|.||.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 25 ~~~v~a~~~G~v~~~~v~~Gd-~V~~Gq~L~~ie~ 58 (94)
T 2jku_A 25 SSVLRSPMPGVVVAVSVKPGD-AVAEGQEICVIEA 58 (94)
T ss_dssp CCCCCCSSSCEEEEECCCTTC-CCCTTCCCEEEEC
T ss_pred ceEEECCCCEEEEEEECCCCC-EEcCCCEEEEEec
Confidence 345899999999999999997 9999999999853
No 81
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans}
Probab=90.57 E-value=0.16 Score=51.22 Aligned_cols=54 Identities=20% Similarity=0.239 Sum_probs=43.7
Q ss_pred cCCCeeCCCCeEEEEEec-ceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 141 KEGDKVSPGEVLCEVETD-KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 141 ~~Gd~V~~gd~L~eVetd-Ka~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
+.|+....-..-+.|+.+ .-.+.|.++.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 36 ~~~~~~~~~~~~G~v~~~p~~~~~v~~~~~G~V~~v~v~~G~-~V~kGq~L~~ld~ 90 (359)
T 3lnn_A 36 TRETVAAPFNLPAMIEADPAKLVKVLPPLAGRIVSLNKQLGD-EVKAGDVLFTIDS 90 (359)
T ss_dssp EEEEECCEEEEEEEEECCSSSEEEECCSSCEEEEECCSCTTC-EECTTCEEEEEEC
T ss_pred eecccceeEEEEEEEEECCCcEEEEeccCCEEEEEEEcCCCC-EEcCCCEEEEECh
Confidence 444444444566788875 67889999999999999999997 9999999999854
No 82
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A
Probab=90.43 E-value=0.17 Score=40.04 Aligned_cols=33 Identities=15% Similarity=0.224 Sum_probs=29.7
Q ss_pred eEEecCCCeEEEEE-------EecCCCeeeecCCEEEEEec
Q 010531 162 VEMECMEEGYLAKI-------VKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 162 ~ei~ap~~G~v~~i-------~~~eG~~~v~vG~~la~i~~ 195 (508)
..|.||..|+|.++ ++++|+ .|+.|++|+.+..
T Consensus 5 ~~v~a~~~G~v~~~~~~~~~~~v~~G~-~V~~G~~l~~ie~ 44 (80)
T 1bdo_A 5 HIVRSPMVGTFYRTPSPDAKAFIEVGQ-KVNVGDTLCIVEA 44 (80)
T ss_dssp EEEECSSSEEEESSSSTTSCCSCCTTC-EECTTCEEEEEEE
T ss_pred eEEEcCCCeEEEEecccCcccccCCcC-EECCCCEEEEEEe
Confidence 46899999999998 899997 9999999999854
No 83
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=90.19 E-value=0.15 Score=46.88 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=49.9
Q ss_pred CCeEEEEEEEccCCCeeCC----CCeEEEEEecceeeEEecCCCeEEEEE------------------------------
Q 010531 130 MQEGNIARWLKKEGDKVSP----GEVLCEVETDKATVEMECMEEGYLAKI------------------------------ 175 (508)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~----gd~L~eVetdKa~~ei~ap~~G~v~~i------------------------------ 175 (508)
.-.|+|+.. .++.|.|-. |+-++...++ ..+.||++|+|..+
T Consensus 18 P~~G~vv~l-~~v~D~vfs~~~~G~Giai~p~~---~~v~AP~~G~V~~v~~t~hAigi~t~~G~evLiHIGidTV~l~G 93 (162)
T 1ax3_A 18 PITGEIHPI-TDVPDQVFSGKMMGDGFAILPSE---GIVVSPVRGKILNVFPTKHAIGLQSDGGREILIHFGIDTVSLKG 93 (162)
T ss_dssp CCSEEEEEG-GGSSSHHHHTCTTSEEEEEEECS---SEEEESCCEEEEECCSSSSEEEEESSSSCEEEEECSSSTTTTTT
T ss_pred cCceEEEEe-EECCCccccccceeceEEEEeCC---CcEECCCCeEEEEEccCCeEEEEEcCCCCEEEEEECccchhcCC
Confidence 356999996 788888766 8889888874 47899999999988
Q ss_pred -----EecCCCeeeecCCEEEEE
Q 010531 176 -----VKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 176 -----~~~eG~~~v~vG~~la~i 193 (508)
++++|| .|+.|++|+.+
T Consensus 94 ~gF~~~V~~Gd-~V~~G~~L~~~ 115 (162)
T 1ax3_A 94 EGFTSFVSEGD-RVEPGQKLLEV 115 (162)
T ss_dssp TTEEESCCCCS-EECSEEEEEEE
T ss_pred CccEEEEeCCC-EEcCCCEEEEE
Confidence 788997 89999999887
No 84
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum}
Probab=90.11 E-value=0.24 Score=38.87 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=25.1
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEe
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVET 157 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVet 157 (508)
..|+|.++++++||.|..|++|++|+|
T Consensus 51 ~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (77)
T 2l5t_A 51 VRGKIVKILYREGQVVPVGSTLLQIDT 77 (77)
T ss_dssp CCEEEEEECCCTTCEECSCSEEEEEEC
T ss_pred CCEEEEEEEeCCcCEECCCCEEEEEEC
Confidence 469999999999999999999999975
No 85
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=89.56 E-value=0.31 Score=48.70 Aligned_cols=54 Identities=13% Similarity=0.189 Sum_probs=41.3
Q ss_pred ccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 140 KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 140 v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
++.|+.-..=..-..|+.. -.+.|.++.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 11 v~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~-~V~kG~~L~~ld~ 64 (341)
T 3fpp_A 11 VRPGDLQQSVLATGKLDAL-RKVDVGAQVSGQLKTLSVAIGD-KVKKDQLLGVIDP 64 (341)
T ss_dssp --CCCCCCEEEEEEEEEES-SEEECCCSSCEEEEEECCCTTC-EECTTCEEEEECC
T ss_pred EEEeceeEEEEEEEEEEee-EEEEEeccCCcEEEEEEeCCCC-EECCCCEEEEECh
Confidence 3445544444455677765 4678999999999999999997 9999999999843
No 86
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=87.38 E-value=0.44 Score=48.96 Aligned_cols=32 Identities=16% Similarity=0.362 Sum_probs=26.6
Q ss_pred EEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEE
Q 010531 137 RWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAK 174 (508)
Q Consensus 137 ~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~ 174 (508)
..+|++||.|++||.||+-. .|-|..+|+|.+
T Consensus 62 ~l~v~~g~~V~~g~~la~wd------pii~e~~G~v~~ 93 (352)
T 2xhc_A 62 KLHVNNGKDVNKGDLIAEEP------PIYARRSGVIVD 93 (352)
T ss_dssp EESCCTTCEECTTCEEEEEC------CEECSSCEEEEE
T ss_pred EEEecCCCEEcCCCEEEEec------cEEEecceEEEe
Confidence 67899999999999999965 677777777743
No 87
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A
Probab=87.14 E-value=0.4 Score=37.83 Aligned_cols=27 Identities=41% Similarity=0.633 Sum_probs=24.9
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEe
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVET 157 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVet 157 (508)
..|+|.++++++||.|..|++|++|+.
T Consensus 51 ~~G~v~~~~v~~G~~v~~g~~l~~i~~ 77 (79)
T 1ghj_A 51 ADGVIAEIVKNEGDTVLSGELLGKLTE 77 (79)
T ss_dssp SCEEEEEESSCTTCEECTTCEEEEECC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 369999999999999999999999875
No 88
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B
Probab=87.01 E-value=0.49 Score=49.17 Aligned_cols=53 Identities=11% Similarity=0.169 Sum_probs=41.1
Q ss_pred cCCCeeCCCCeEEEEEec-ceeeEEecCCCeEEEEEEe-cCCCeeeecCCEEEEEe
Q 010531 141 KEGDKVSPGEVLCEVETD-KATVEMECMEEGYLAKIVK-GDGSKEIKVGEVIAITV 194 (508)
Q Consensus 141 ~~Gd~V~~gd~L~eVetd-Ka~~ei~ap~~G~v~~i~~-~eG~~~v~vG~~la~i~ 194 (508)
+.|+.-..=.....|+.| .-...|.++.+|+|.++++ ++|+ .|+.||+|+.+.
T Consensus 100 ~~~~~~~~v~~~G~V~~~~~~~~~v~a~~~G~V~~v~V~~~Gd-~VkkGq~L~~ld 154 (413)
T 3ne5_B 100 TRGPLTFAQSFPANVSYNEYQYAIVQARAAGFIDKVYPLTVGD-KVQKGTPLLDLT 154 (413)
T ss_dssp EEECCEEEEEEEEEEEEEEEEEEEECCSSCEEEEEECSCCTTC-EECTTCEEEEEE
T ss_pred EEeecceEEEEEEEEEECCCceEEEecccCEEEEEEEeCCCCC-EEcCCCEEEEEc
Confidence 334444444455677753 5678899999999999998 9997 999999999985
No 89
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=86.16 E-value=0.38 Score=37.92 Aligned_cols=28 Identities=25% Similarity=0.378 Sum_probs=25.5
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEec
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETD 158 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetd 158 (508)
..|+|.++++++||.|..|++|++|+..
T Consensus 50 ~~G~v~~~~v~~G~~V~~G~~l~~i~~~ 77 (80)
T 1qjo_A 50 FAGVVKELKVNVGDKVKTGSLIMIFEVE 77 (80)
T ss_dssp SCEEEEECCCCTTCEECTTCCCEEEESC
T ss_pred CCEEEEEEecCCCCEECCCCEEEEEEcc
Confidence 3699999999999999999999999854
No 90
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C*
Probab=85.63 E-value=0.47 Score=38.38 Aligned_cols=29 Identities=34% Similarity=0.585 Sum_probs=25.9
Q ss_pred CeEEEEEEEccCCC-eeCCCCeEEEEEecc
Q 010531 131 QEGNIARWLKKEGD-KVSPGEVLCEVETDK 159 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd-~V~~gd~L~eVetdK 159 (508)
..|+|.++++++|| .|..|++|++|+...
T Consensus 55 ~~G~v~~~~v~~G~~~V~~G~~l~~i~~~~ 84 (87)
T 3crk_C 55 EEGYLAKILVPEGTRDVPLGTPLCIIVEKE 84 (87)
T ss_dssp SCEEEEEESSCTTCCCEETTCEEEEEESSS
T ss_pred cCcEEEEEEECCCCeEECCCCEEEEEEccc
Confidence 46999999999999 899999999998643
No 91
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A
Probab=85.42 E-value=0.68 Score=38.12 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=25.6
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEec
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETD 158 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetd 158 (508)
..|+|.++++++||.|..|++|++|+..
T Consensus 54 ~~G~V~~i~v~~G~~V~~G~~l~~i~~~ 81 (93)
T 1k8m_A 54 YDGVIKKLYYNLDDIAYVGKPLVDIETE 81 (93)
T ss_dssp SCEEEEEECCCSSCEECTTSEEEEEECS
T ss_pred CCEEEEEEEcCCCCEeCCCCEEEEEecC
Confidence 4699999999999999999999999853
No 92
>1vf7_A Multidrug resistance protein MEXA; alpha hairpin, beta barrel, membrane protein; 2.40A {Pseudomonas aeruginosa} SCOP: f.46.1.1 PDB: 2v4d_A 1t5e_A
Probab=85.24 E-value=0.48 Score=48.26 Aligned_cols=52 Identities=15% Similarity=0.134 Sum_probs=37.6
Q ss_pred cCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 141 KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 141 ~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
+.|+.-..-..-+.|+.. -.+.|.++.+|+|.++++++|+ .|+.|++|+.+.
T Consensus 24 ~~~~~~~~~~~~G~v~~~-~~~~v~a~v~G~V~~v~v~~Gd-~V~kGq~L~~ld 75 (369)
T 1vf7_A 24 EAQTVTLNTELPGRTNAF-RIAEVRPQVNGIILKRLFKEGS-DVKAGQQLYQID 75 (369)
T ss_dssp -----CCEEEEEEECEES-CEEEECCSSCEEEEECCSCSSE-EECTTSEEEEEC
T ss_pred EeeccceEEEEEEEEEee-eEEEEEeeCceEEEEEEcCCCC-EEcCCCEEEEEC
Confidence 333333333445566654 4678999999999999999997 999999999984
No 93
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A
Probab=84.67 E-value=0.57 Score=36.93 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=24.9
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEec
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETD 158 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetd 158 (508)
.|+|.++++++||.|..|++|++|+.+
T Consensus 49 ~G~v~~~~v~~G~~V~~g~~l~~i~~~ 75 (79)
T 1iyu_A 49 AGVVKSVSVKLGDKLKEGDAIIELEPA 75 (79)
T ss_dssp SSEEEEESCCTTCEEETTSEEEEEECC
T ss_pred CEEEEEEEeCCCCEECCCCEEEEEecC
Confidence 689999999999999999999999853
No 94
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1
Probab=84.10 E-value=0.58 Score=37.00 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=27.0
Q ss_pred EecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 164 MECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 164 i~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
+-++..|.|.++++++|+ .|+.|++|+.+..
T Consensus 10 ~g~~~~G~i~~~~v~~Gd-~V~~G~~l~~ie~ 40 (81)
T 1gjx_A 10 IGGHENVDIIAVEVNVGD-TIAVDDTLITLET 40 (81)
T ss_dssp CSSCSSEEEEEECCCSSC-BCCSSCCCEEEEC
T ss_pred CCCCCcEEEEEEEcCCCC-EECCCCEEEEEEe
Confidence 335789999999999997 9999999999853
No 95
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli}
Probab=80.80 E-value=0.63 Score=37.39 Aligned_cols=28 Identities=25% Similarity=0.378 Sum_probs=25.2
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEec
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVETD 158 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVetd 158 (508)
..|+|.++++++||.|..|++|+.|+.+
T Consensus 46 ~~G~V~~~~v~~G~~V~~G~~l~~i~~~ 73 (85)
T 2k7v_A 46 FAGVVKELKVNVGDKVKTGSLIMIFEVE 73 (85)
T ss_dssp SCBCCCEECSCTTCCBCTTSEEEEEECC
T ss_pred CCEEEEEEEeCCCCEECCCCEEEEEEcC
Confidence 3588999999999999999999999864
No 96
>2auk_A DNA-directed RNA polymerase beta' chain; sandwich-barrel hybrid motif, transferase; 2.30A {Escherichia coli}
Probab=80.56 E-value=1.5 Score=41.10 Aligned_cols=42 Identities=24% Similarity=0.307 Sum_probs=35.2
Q ss_pred EEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCC
Q 010531 137 RWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDG 180 (508)
Q Consensus 137 ~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG 180 (508)
..+|++||.|++|+.||+. |..+..|-+..+|+|.=--..+|
T Consensus 63 ~L~V~dG~~V~~G~~laew--Dp~t~pIisE~~G~V~f~dii~G 104 (190)
T 2auk_A 63 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVRFTDMIDG 104 (190)
T ss_dssp EESSCTTCEECTTCEEEEC--CSSEEEEECSSCEEEEEESCCBT
T ss_pred EEEecCCCEEcCCCEEEEE--cCcCCcEEeccccEEEEEeccCC
Confidence 5689999999999999977 89999999999999964333333
No 97
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.27 E-value=0.85 Score=37.98 Aligned_cols=29 Identities=21% Similarity=0.384 Sum_probs=26.2
Q ss_pred CeEEEEEEEccCCCee-CCCCeEEEEEecc
Q 010531 131 QEGNIARWLKKEGDKV-SPGEVLCEVETDK 159 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V-~~gd~L~eVetdK 159 (508)
..|+|.++++++||.| ..|++|+.|+.+.
T Consensus 57 ~~G~v~~i~v~~G~~Vv~~G~~l~~i~~~~ 86 (98)
T 2dnc_A 57 DDGILAKIVVEEGSKNIRLGSLIGLIVEEG 86 (98)
T ss_dssp SCEEEEECSSCTTCCCEESSCEEEEEECTT
T ss_pred CCEEEEEEEeCCCCEEcCCCCEEEEEecCC
Confidence 4699999999999999 9999999998653
No 98
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens}
Probab=79.81 E-value=0.92 Score=38.52 Aligned_cols=28 Identities=32% Similarity=0.521 Sum_probs=24.9
Q ss_pred CCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 167 MEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 167 p~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
..+|+|.++++++|+ .|+.|++|+++..
T Consensus 19 ~~~G~v~~~~v~~Gd-~V~~G~~L~~iE~ 46 (108)
T 2dne_A 19 MQAGTIARWEKKEGD-KINEGDLIAEVET 46 (108)
T ss_dssp CCEEEEEECSSCTTC-EECTTSEEEEEEC
T ss_pred cccEEEEEEEcCCCC-EecCCCEEEEEEc
Confidence 368999999999997 9999999999853
No 99
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A
Probab=79.38 E-value=1.2 Score=39.14 Aligned_cols=28 Identities=36% Similarity=0.591 Sum_probs=25.4
Q ss_pred CeEEEEEEEccCCC-eeCCCCeEEEEEec
Q 010531 131 QEGNIARWLKKEGD-KVSPGEVLCEVETD 158 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd-~V~~gd~L~eVetd 158 (508)
..|+|.++++++|| .|..|++|++|+..
T Consensus 77 ~~G~V~~i~v~~Gd~~V~~G~~L~~i~~~ 105 (128)
T 1y8o_B 77 EEGYLAKILVPEGTRDVPLGTPLCIIVEK 105 (128)
T ss_dssp SCEEEEEESSCTTCCSEETTCEEEEEESS
T ss_pred CCeEEEEEEeCCCCeeecCCCEEEEEecC
Confidence 46999999999998 89999999999853
No 100
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi}
Probab=78.45 E-value=1.7 Score=48.27 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=31.1
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 161 ~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
...|.||..|+|.++++++|| .|+.||+|+++...
T Consensus 612 ~~~v~ap~~G~v~~~~v~~Gd-~V~~g~~l~~iEam 646 (681)
T 3n6r_A 612 SKMLLCPMPGLIVKVDVEVGQ-EVQEGQALCTIEAM 646 (681)
T ss_dssp CSEEECCSCEEEEEECCCTTC-EECTTCEEEEEECS
T ss_pred CCeEECCCcEEEEEEEeCCCC-EEcCCCEEEEEEec
Confidence 456999999999999999997 99999999998543
No 101
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=78.28 E-value=0.44 Score=48.02 Aligned_cols=53 Identities=21% Similarity=0.254 Sum_probs=41.3
Q ss_pred cCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 141 KEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 141 ~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
+.|+.-..=..-..|+.. -.+.|.++.+|+|.++++++|+ .|+.|++|+.+..
T Consensus 13 ~~~~~~~~v~~~G~v~~~-~~~~v~~~~~G~V~~v~v~~G~-~V~~Gq~L~~ld~ 65 (369)
T 4dk0_A 13 KRGNIEKNVVATGSIESI-NTVDVGAQVSGKITKLYVKLGQ-QVKKGDLLAEIDS 65 (369)
T ss_dssp CEECCCCCCEEEEEEECS-SCCCBCCCSCSBCCEECCCTTS-CCCSSCCCEECCC
T ss_pred EecceeEEEEEeEEEEee-eeEEEecCCCcEEEEEEECCCC-EECCCCEEEEEcC
Confidence 444444444556677744 4668999999999999999997 9999999999843
No 102
>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}
Probab=75.48 E-value=0.86 Score=42.98 Aligned_cols=45 Identities=31% Similarity=0.450 Sum_probs=33.6
Q ss_pred ccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEE--------------------------E--EecCCCeeeecCCEEE
Q 010531 140 KKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAK--------------------------I--VKGDGSKEIKVGEVIA 191 (508)
Q Consensus 140 v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~--------------------------i--~~~eG~~~v~vG~~la 191 (508)
+++|+.|+.||+|+ -| ..|-|..+|+|.= + ++++|| .|..|++|+
T Consensus 85 V~dG~~V~~GdvLA---Kd---~AIiaEIdG~V~fgkgkrrivI~~~~Ge~~eylIPk~k~i~~~V~eGd-~V~~Ge~L~ 157 (193)
T 2xha_A 85 LRVGTKVKQGLPLS---KN---EEYICELDGKIVEIERMKKVVVQTPDGEQDVYYIPLDVFDRDRIKKGK-EVKQGEMLA 157 (193)
T ss_dssp CCTTCEECTTSBSS---TT---SCSBCCSSEEEEEEEEEEEEEEECTTSCEEEEEEEGGGCCTTTSCTTC-EECTTCEEE
T ss_pred cCCCCEEcCCCEEe---cC---CeEEEccceEEEECCCeEEEEEECCCCCEEEEEeCCCCccccccCCCC-EECCCCCcc
Confidence 68899999999998 33 3345777777641 2 678886 889999885
No 103
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=72.61 E-value=5.1 Score=37.40 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=15.4
Q ss_pred EecCCCeeeecCCEEEEE
Q 010531 176 VKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 176 ~~~eG~~~v~vG~~la~i 193 (508)
++++|+ .|+.||+|+.+
T Consensus 121 ~V~~Gd-~Vk~Gd~L~~f 137 (183)
T 3our_B 121 IAEEGQ-TVKAGDTVIEF 137 (183)
T ss_dssp CSCTTC-EECTTCEEEEE
T ss_pred EEeCcC-EEcCCCEEEEE
Confidence 789997 89999999887
No 104
>2bco_A Succinylglutamate desuccinylase; NESG, VPR14, structural genomics, PSI, protein structure initiative; 2.33A {Vibrio parahaemolyticus} SCOP: c.56.5.7 PDB: 2g9d_A
Probab=71.97 E-value=3.4 Score=42.02 Aligned_cols=50 Identities=16% Similarity=0.110 Sum_probs=39.9
Q ss_pred EccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 139 LKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 139 ~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
.++.|+.|++||+|+++- | .+|.+|.+|.+.- .. .- .|..|+.++.++..
T Consensus 280 ~~~~g~~V~~G~~La~i~-d---~~v~a~~dG~~i~--~p-~p-~V~~G~~~~~i~~~ 329 (350)
T 2bco_A 280 NVENFTSFVHGEVFGHDG-D---KPLMAKNDNEAIV--FP-NR-HVAIGQRAALMVCE 329 (350)
T ss_dssp TCCBTEECCTTCEEEEET-T---EEEECSSSSCEEE--SC-CT-TCCTTSEEEEEEEE
T ss_pred cccCCCEeCCCCEEEEEC-C---EEEEeCCCCEEEE--ec-CC-CCCCCcEEEEEEEE
Confidence 368899999999999994 5 6889999998753 33 44 69999998877643
No 105
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*
Probab=70.80 E-value=3.3 Score=48.77 Aligned_cols=34 Identities=15% Similarity=0.210 Sum_probs=30.8
Q ss_pred eEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 162 ~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
..|.||..|+|.++++++|+ .|+.||+|+++...
T Consensus 1078 ~~v~ap~~G~v~~~~v~~Gd-~V~~G~~l~~ieam 1111 (1150)
T 3hbl_A 1078 SHIGAQMPGSVTEVKVSVGE-TVKANQPLLITEAM 1111 (1150)
T ss_dssp SEEECSSSEEEEEECCCTTC-EECTTCEEEEEESS
T ss_pred ceeecCceEEEEEEEeCCCC-EECCCCEEEEEEec
Confidence 46999999999999999997 99999999998543
No 106
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1
Probab=70.45 E-value=0.55 Score=37.25 Aligned_cols=27 Identities=22% Similarity=0.436 Sum_probs=24.3
Q ss_pred CeEEEEEEEccCCCeeCCCCeEEEEEe
Q 010531 131 QEGNIARWLKKEGDKVSPGEVLCEVET 157 (508)
Q Consensus 131 ~eg~I~~W~v~~Gd~V~~gd~L~eVet 157 (508)
..|+|.++++++||.|..|++|++|+.
T Consensus 52 ~~G~v~~~~v~~G~~v~~G~~l~~i~~ 78 (80)
T 1pmr_A 52 ADGILDAVLEDEGTTVTSRQILGRLRE 78 (80)
T ss_dssp SBCCCCBCTTCTTCEECSSSEEEBCCC
T ss_pred CCEEEEEEEcCCcCEECCCCEEEEEec
Confidence 468999999999999999999998864
No 107
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis}
Probab=68.89 E-value=3.6 Score=48.86 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=31.3
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 161 ~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
...|.||..|+|.++++++|| .|+.||+|+++...
T Consensus 1167 ~~~v~ap~~G~v~~~~v~~Gd-~V~~g~~l~~iEam 1201 (1236)
T 3va7_A 1167 AELLYSEYTGRFWKPVAAVGD-HVEAGDGVIIIEAM 1201 (1236)
T ss_dssp CEEEECSSCEEEEEESSCTTC-EECSSCEEEEEEET
T ss_pred CcEEeCCCcEEEEEEEcCCCC-EECCCCEEEEEEec
Confidence 456999999999999999997 99999999998543
No 108
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A
Probab=67.59 E-value=2.8 Score=46.94 Aligned_cols=33 Identities=12% Similarity=0.196 Sum_probs=30.3
Q ss_pred eEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 162 ~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
..|.||..|+|.++.+++|+ .|+.||+|+++..
T Consensus 650 ~~v~ap~~G~V~~v~V~~Gd-~V~~Gq~L~~iEa 682 (718)
T 3bg3_A 650 GQIGAPMPGKVIDIKVVAGA-KVAKGQPLCVLSA 682 (718)
T ss_dssp SCEECSSCEEEEEECSCTTC-CBCTTCCCEEEES
T ss_pred ceEeCCCCeEEEEEEeCCCC-eeCCCCEEEEEec
Confidence 46999999999999999997 9999999999854
No 109
>3lu0_D DNA-directed RNA polymerase subunit beta'; E. coli RNA polymerase, nucleotidyltransferase, transcription, transferase; 11.20A {Escherichia coli} PDB: 3iyd_D*
Probab=63.10 E-value=4.6 Score=48.01 Aligned_cols=35 Identities=23% Similarity=0.381 Sum_probs=29.8
Q ss_pred EEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEE
Q 010531 137 RWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLA 173 (508)
Q Consensus 137 ~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~ 173 (508)
..+|++||.|++||.||+. |--+..|-+.++|+|.
T Consensus 1002 ~l~v~~g~~V~~g~~ia~w--Dp~~~piise~~G~v~ 1036 (1407)
T 3lu0_D 1002 VLAKGDGEQVAGGETVANW--DPHTMPVITEVSGFVR 1036 (1407)
T ss_dssp EESSCSSCEECTTCEEEEC--CSSCCCEECSSCEEEE
T ss_pred EEEEcCCCEecCCCEEEEE--ecCceeEEeccceEEE
Confidence 5789999999999999987 5677788888888775
No 110
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*
Probab=62.03 E-value=5 Score=47.36 Aligned_cols=33 Identities=12% Similarity=0.340 Sum_probs=27.4
Q ss_pred eEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 162 ~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
..|.||..|+|.++.+++|+ .|+.||+|+++..
T Consensus 1096 ~~v~ap~~G~v~~~~v~~Gd-~V~~G~~l~~iEa 1128 (1165)
T 2qf7_A 1096 AHVGAPMPGVISRVFVSSGQ-AVNAGDVLVSIEA 1128 (1165)
T ss_dssp TEEECSSCEEEEEECCSSCC-CC---CEEEEEEC
T ss_pred ceeeCCCCeEEEEEEcCCcC-EeCCCCEEEEEEc
Confidence 56999999999999999997 9999999999853
No 111
>3u9t_A MCC alpha, methylcrotonyl-COA carboxylase, alpha-subunit; biotin carboxylase, carboxyltransferase, BT domain, BCCP DOM ligase; 2.90A {Pseudomonas aeruginosa} PDB: 3u9s_A
Probab=61.83 E-value=1.7 Score=48.34 Aligned_cols=33 Identities=9% Similarity=0.288 Sum_probs=0.0
Q ss_pred eEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 162 VEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 162 ~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
-.|.||..|+|.++++++|| .|+.||+|+++..
T Consensus 603 ~~v~ap~~G~v~~~~v~~Gd-~V~~g~~l~~iEa 635 (675)
T 3u9t_A 603 GGLSAPMNGSIVRVLVEPGQ-TVEAGATLVVLEA 635 (675)
T ss_dssp ----------------------------------
T ss_pred CeEECCCCEEEEEEEeCCCC-EEcCCCEEEEEEe
Confidence 45999999999999999997 9999999998743
No 112
>3our_B EIIA, phosphotransferase system IIA component; exhibit no hydrolase activity1, lyase-transferase complex; 2.20A {Vibrio vulnificus} SCOP: b.84.3.1
Probab=59.41 E-value=3 Score=38.96 Aligned_cols=28 Identities=21% Similarity=0.375 Sum_probs=24.1
Q ss_pred eEEEEEEEccCCCeeCCCCeEEEEEecc
Q 010531 132 EGNIARWLKKEGDKVSPGEVLCEVETDK 159 (508)
Q Consensus 132 eg~I~~W~v~~Gd~V~~gd~L~eVetdK 159 (508)
+|+--+++|++||+|++||+|+++.-++
T Consensus 114 ~G~gF~~~V~~Gd~Vk~Gd~L~~fD~~~ 141 (183)
T 3our_B 114 KGEGFTRIAEEGQTVKAGDTVIEFDLAL 141 (183)
T ss_dssp TTTTEEECSCTTCEECTTCEEEEECHHH
T ss_pred CCccceEEEeCcCEEcCCCEEEEECHHH
Confidence 4666789999999999999999998654
No 113
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A
Probab=58.69 E-value=2 Score=45.11 Aligned_cols=31 Identities=19% Similarity=0.296 Sum_probs=0.0
Q ss_pred CCeEEEEEEEccCCCeeCCCCeEEEEEecce
Q 010531 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDKA 160 (508)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa 160 (508)
-.+|+|.++++++||.|..|++|+.|+.+..
T Consensus 51 p~~G~v~~i~v~~G~~V~~G~~l~~i~~~~~ 81 (428)
T 3dva_I 51 PVKGKVLEILVPEGTVATVGQTLITLDAPGY 81 (428)
T ss_dssp -------------------------------
T ss_pred CCCeEEEEEEeCCCCEeCCCCEEEEEecCCc
Confidence 3579999999999999999999999997543
No 114
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=54.94 E-value=13 Score=39.04 Aligned_cols=43 Identities=21% Similarity=0.360 Sum_probs=36.2
Q ss_pred EEecceeeEEecCCCeEEEEE-------------------------------EecCCCeeeecCCEEEEEeccCC
Q 010531 155 VETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVEEEE 198 (508)
Q Consensus 155 VetdKa~~ei~ap~~G~v~~i-------------------------------~~~eG~~~v~vG~~la~i~~~~~ 198 (508)
+-..+...+|.|+.+|+|..| +.+.|+ .|..|++|+++....+
T Consensus 329 ~~~~~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~~d~~~Gi~~~~k~g~-~v~~g~~l~~i~~~~~ 402 (433)
T 1brw_A 329 LPKAAYTSTVTAAADGYVAEMAADDIGTAAMWLGAGRAKKEDVIDLAVGIVLHKKIGD-RVQKGEALATIHSNRP 402 (433)
T ss_dssp SCCCSEEEEEECSSSEEEEEECHHHHHHHHHHHTTSCSSTTCCCCTTCEEEESCCTTC-EECTTCEEEEEEESSS
T ss_pred CCCCCeEEEEecCCCeEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCC-EECCCCeEEEEEcCCc
Confidence 456788899999999999887 778897 9999999999876543
No 115
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=53.93 E-value=14 Score=39.00 Aligned_cols=39 Identities=18% Similarity=0.361 Sum_probs=33.8
Q ss_pred EecceeeEEecCCCeEEEEE-------------------------------EecCCCeeeecCCEEEEEec
Q 010531 156 ETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 156 etdKa~~ei~ap~~G~v~~i-------------------------------~~~eG~~~v~vG~~la~i~~ 195 (508)
...+...+|.|+.+|+|..| +.+.|+ .|..|++|+++.+
T Consensus 333 ~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lGagr~~~~d~id~~~Gi~l~~~~G~-~V~~g~~l~~i~~ 402 (436)
T 3h5q_A 333 PQAQYQIEYKAKKSGYVTELVSNDIGVASMMLGAGRLTKEDDIDLAVGIVLNKKIGD-KVEEGESLLTIHS 402 (436)
T ss_dssp CCCSEEEEEECSSCEEEEEECHHHHHHHHHHTTTSCSSTTCCCCTTCEEEESCCTTC-EECTTSEEEEEEE
T ss_pred CCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCCCCceEEecCCcC-EeCCCCeEEEEeC
Confidence 34578899999999999988 667997 8999999999983
No 116
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=53.30 E-value=13 Score=38.99 Aligned_cols=42 Identities=17% Similarity=0.373 Sum_probs=34.7
Q ss_pred EEecceeeEEecCCCeEEEEE-------------------------------EecCCCeeeecCCEEEEEeccCC
Q 010531 155 VETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVEEEE 198 (508)
Q Consensus 155 VetdKa~~ei~ap~~G~v~~i-------------------------------~~~eG~~~v~vG~~la~i~~~~~ 198 (508)
+-..+ ..+|.|+.+|+|..| +.+.|| .|..|++|+++..+.+
T Consensus 322 ~~~a~-~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~-~v~~g~~l~~i~~~~~ 394 (423)
T 2dsj_A 322 LPLAE-EHPLRAEREGVVREVDAYKVGLAVLALGGGRKRKGEPIDHGVGVYLLKKPGD-RVERGEALALVYHRRR 394 (423)
T ss_dssp SCCCE-EEEEECSSCEEEEEECHHHHHHHHHHHTSSCSSTTCCCCTTCEEEESCCTTC-EECTTSEEEEEEECSS
T ss_pred CCCCC-eEEEecCCCeEEEEechHHHHHHHHHcCCCcCcCCCCCCcCcCeeeeccCCC-EeCCCCeEEEEEeCCc
Confidence 34567 889999999999877 778897 9999999999876543
No 117
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=51.73 E-value=9.5 Score=37.84 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.2
Q ss_pred EEEEEEccCCCeeCCCCeEEEEE
Q 010531 134 NIARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 134 ~I~~W~v~~Gd~V~~gd~L~eVe 156 (508)
.-++|++++|+.|++||+|++|+
T Consensus 71 ~~v~~~~~dG~~v~~g~~v~~i~ 93 (284)
T 1qpo_A 71 YRVLDRVEDGARVPPGEALMTLE 93 (284)
T ss_dssp EEEEEECCTTCEECTTCEEEEEE
T ss_pred EEEEEEcCCCCEecCCcEEEEEE
Confidence 34689999999999999999988
No 118
>2gpr_A Glucose-permease IIA component; phosphotransferase, enzyme IIA; 2.50A {Mycoplasma capricolum} SCOP: b.84.3.1
Probab=50.49 E-value=5.2 Score=36.26 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=28.8
Q ss_pred EEecCCCCCCC--CeEEEEEEEccCCCeeCCCCeEEEEEec
Q 010531 120 EIGMPSLSPTM--QEGNIARWLKKEGDKVSPGEVLCEVETD 158 (508)
Q Consensus 120 ~i~mP~lg~~~--~eg~I~~W~v~~Gd~V~~gd~L~eVetd 158 (508)
++.+ .+|.+. -.|+=.+.+|++||+|+.||+|+++.-+
T Consensus 74 evLi-HiGidTv~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~ 113 (154)
T 2gpr_A 74 EILL-HIGLDTVSLDGNGFESFVTQDQEVNAGDKLVTVDLK 113 (154)
T ss_dssp EEEE-ECSSSGGGGTTCSEEECCCTTCEECTTCEEEEECHH
T ss_pred EEEE-EECcchhhcCCCceEEEEcCCCEEcCCCEEEEECHH
Confidence 5555 555432 3566678899999999999999999854
No 119
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=49.56 E-value=11 Score=37.05 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=18.8
Q ss_pred EEEEccCCCeeCCCCeEEEEE
Q 010531 136 ARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 136 ~~W~v~~Gd~V~~gd~L~eVe 156 (508)
++|.+++|+.|..||+|++|+
T Consensus 60 v~~~~~eG~~v~~g~~~~~v~ 80 (273)
T 2b7n_A 60 CVQTIKDKERFKPKDALMEIR 80 (273)
T ss_dssp EEEECCTTCEECTTCEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEE
Confidence 478999999999999999888
No 120
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=49.15 E-value=9.2 Score=37.99 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=19.6
Q ss_pred EEEEccCCCeeCCCCeEEEEE
Q 010531 136 ARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 136 ~~W~v~~Gd~V~~gd~L~eVe 156 (508)
++|++++||.|++||+|++|+
T Consensus 74 v~~~~~dG~~v~~g~~v~~i~ 94 (286)
T 1x1o_A 74 FTPLVAEGARVAEGTEVARVR 94 (286)
T ss_dssp EEESSCTTCEECTTCEEEEEE
T ss_pred EEEEcCCCCCccCCCEEEEEE
Confidence 589999999999999999998
No 121
>1zy8_K Pyruvate dehydrogenase protein X component, mitochondrial; human, dihydrolipoamide dehydrogenase, dihydrolipoyl dehydrogenase; HET: FAD; 2.59A {Homo sapiens}
Probab=48.95 E-value=3.6 Score=39.59 Aligned_cols=29 Identities=28% Similarity=0.514 Sum_probs=0.0
Q ss_pred cCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 166 CMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 166 ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
+..+|+|.++++++|| .|..|++|+.+..
T Consensus 14 sm~eG~I~~w~vk~Gd-~V~~Gd~L~~iEt 42 (229)
T 1zy8_K 14 TMEEGNIVKWLKKEGE-AVSAGDALCEIET 42 (229)
T ss_dssp ------------------------------
T ss_pred CCCcEEEEEEecCCCC-EeCCCCEEEEEec
Confidence 3468999999999997 9999999998743
No 122
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=48.28 E-value=9.7 Score=37.94 Aligned_cols=21 Identities=24% Similarity=0.534 Sum_probs=18.9
Q ss_pred EEEEccCCCeeCCCCeEEEEE
Q 010531 136 ARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 136 ~~W~v~~Gd~V~~gd~L~eVe 156 (508)
++|++++|+.|++||+|++|+
T Consensus 77 v~~~~~dG~~v~~g~~v~~i~ 97 (287)
T 3tqv_A 77 ITWLYSDAQKVPANARIFELK 97 (287)
T ss_dssp EEESSCTTCEECTTCEEEEEE
T ss_pred EEEEeCCCCEeeCCCEEEEEE
Confidence 489999999999999999988
No 123
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=47.33 E-value=11 Score=37.92 Aligned_cols=21 Identities=29% Similarity=0.283 Sum_probs=19.3
Q ss_pred EEEEccCCCeeCCCCeEEEEE
Q 010531 136 ARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 136 ~~W~v~~Gd~V~~gd~L~eVe 156 (508)
++|++++|+.|++||+|++|+
T Consensus 86 v~~~~~dG~~v~~g~~v~~i~ 106 (300)
T 3l0g_A 86 YEIHKKDGDITGKNSTLVSGE 106 (300)
T ss_dssp EEECCCTTCEECSSCEEEEEE
T ss_pred EEEEeCCCCEeeCCCEEEEEE
Confidence 589999999999999999988
No 124
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A*
Probab=47.02 E-value=13 Score=38.08 Aligned_cols=35 Identities=11% Similarity=0.168 Sum_probs=30.1
Q ss_pred ceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 159 KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 159 Ka~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
+...-|.||.+|.+. ..++.|+ .|+.||+|++|.+
T Consensus 288 ~~~~~v~A~~~Gl~~-~~v~lGd-~V~kG~~la~I~d 322 (368)
T 3fmc_A 288 KNYRKFHAPKAGMVE-YLGKVGV-PMKATDPLVNLLR 322 (368)
T ss_dssp GGEEEEECSSCEEEE-ECSCTTC-CBCTTCEEEEEEC
T ss_pred CCcEEEecCCCEEEE-EeCCCCC-EeCCCCEEEEEEc
Confidence 344458999999997 7789997 9999999999976
No 125
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=46.32 E-value=11 Score=37.80 Aligned_cols=21 Identities=33% Similarity=0.892 Sum_probs=18.7
Q ss_pred EEEEccCCCeeCCCCeEEEEE
Q 010531 136 ARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 136 ~~W~v~~Gd~V~~gd~L~eVe 156 (508)
++|++++|+.|..||+|++|+
T Consensus 88 v~~~~~dG~~v~~g~~l~~v~ 108 (298)
T 3gnn_A 88 VDWRHREGDRMSADSTVCELR 108 (298)
T ss_dssp EEESSCTTCEECTTCEEEEEE
T ss_pred EEEEcCCCCEecCCCEEEEEE
Confidence 479999999999999999888
No 126
>1f3z_A EIIA-GLC, glucose-specific phosphocarrier; phosphotransferase, signal transduction, sugar transport; 1.98A {Escherichia coli} SCOP: b.84.3.1 PDB: 1f3g_A 1ggr_A 1gla_F 1glb_F* 1glc_F* 1gld_F* 1gle_F* 1o2f_A 2f3g_A
Probab=46.02 E-value=6.6 Score=35.83 Aligned_cols=38 Identities=18% Similarity=0.323 Sum_probs=27.9
Q ss_pred EEecCCCCCCC--CeEEEEEEEccCCCeeCCCCeEEEEEec
Q 010531 120 EIGMPSLSPTM--QEGNIARWLKKEGDKVSPGEVLCEVETD 158 (508)
Q Consensus 120 ~i~mP~lg~~~--~eg~I~~W~v~~Gd~V~~gd~L~eVetd 158 (508)
++.+ .+|.+. -.|+=.+.+|++||+|+.||+|+++.-+
T Consensus 79 evLi-HiGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~ 118 (161)
T 1f3z_A 79 ELFV-HFGIDTVELKGEGFKRIAEEGQRVKVGDTVIEFDLP 118 (161)
T ss_dssp EEEE-ECSBSGGGGTTTTEEECSCTTCEECTTCEEEEECHH
T ss_pred EEEE-EECccchhcCCCccEEEEeCcCEECCCCEEEEECHH
Confidence 5555 455332 2455577899999999999999999854
No 127
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=45.71 E-value=8.7 Score=38.18 Aligned_cols=21 Identities=19% Similarity=0.427 Sum_probs=19.2
Q ss_pred EEEEccCCCeeCCCCeEEEEE
Q 010531 136 ARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 136 ~~W~v~~Gd~V~~gd~L~eVe 156 (508)
++|++++||.|++||+|++|+
T Consensus 73 v~~~~~dG~~v~~g~~v~~i~ 93 (285)
T 1o4u_A 73 SKFNVEDGEYLEGTGVIGEIE 93 (285)
T ss_dssp EEESCCTTCEEESCEEEEEEE
T ss_pred EEEEcCCCCCcCCCCEEEEEE
Confidence 589999999999999999988
No 128
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=45.18 E-value=11 Score=37.99 Aligned_cols=22 Identities=27% Similarity=0.820 Sum_probs=18.7
Q ss_pred EEEEEccCCCeeCCCCeEEEEE
Q 010531 135 IARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 135 I~~W~v~~Gd~V~~gd~L~eVe 156 (508)
-++|++++|+.|..||+|++|+
T Consensus 109 ~v~~~~~dG~~v~~g~~l~~v~ 130 (320)
T 3paj_A 109 SIEWHVQDGDTLTPNQTLCTLT 130 (320)
T ss_dssp EEEESSCTTCEECTTCEEEEEE
T ss_pred EEEEEeCCCCEecCCCEEEEEE
Confidence 3579999999999999988887
No 129
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=44.95 E-value=12 Score=37.41 Aligned_cols=22 Identities=18% Similarity=0.521 Sum_probs=20.2
Q ss_pred EEEEEccCCCeeCCCCeEEEEE
Q 010531 135 IARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 135 I~~W~v~~Gd~V~~gd~L~eVe 156 (508)
-++|++++|+.|..||+|++|+
T Consensus 86 ~v~~~~~dG~~v~~g~~~~~v~ 107 (296)
T 1qap_A 86 RLTWHVDDGDAIHANQTVFELQ 107 (296)
T ss_dssp EEEESCCTTCEECTTCEEEEEE
T ss_pred EEEEEcCCCCEecCCCEEEEEE
Confidence 3589999999999999999998
No 130
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=44.59 E-value=13 Score=39.09 Aligned_cols=42 Identities=14% Similarity=0.259 Sum_probs=35.8
Q ss_pred EEecceeeEEecCCCeEEEEE-------------------------------EecCCCeeeecCCEEEEEeccC
Q 010531 155 VETDKATVEMECMEEGYLAKI-------------------------------VKGDGSKEIKVGEVIAITVEEE 197 (508)
Q Consensus 155 VetdKa~~ei~ap~~G~v~~i-------------------------------~~~eG~~~v~vG~~la~i~~~~ 197 (508)
+-..+...+|.|+.+|+|..| +.+.|+ .|..|++|+++....
T Consensus 334 ~~~a~~~~~v~a~~~G~v~~i~~~~~g~~~~~lGagr~~~~d~id~~~Gi~~~~k~g~-~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 334 LPTAMLTKAVYADTEGFVSEMDTRALGMAVVAMGGGRRQASDTIDYSVGFTDMARLGD-QVDGQRPLAVIHAKD 406 (440)
T ss_dssp SCCCSEEEEECCSSCEEEEEECHHHHHHHHHHHTTSCSSTTCCCCSSCEEESCCCTTC-EEBTTBCSEEEEESS
T ss_pred CCCCCeEEEEecCCCEEEEEechHHHHHHHHHcCCCcCCCCCCCCcCcCeeEeccCCC-EECCCCeEEEEecCC
Confidence 455788899999999999888 778897 899999999987554
No 131
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=41.32 E-value=31 Score=36.72 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=34.9
Q ss_pred EEecceeeEEecCCCeEEEE-----------------------------EEecCCCeeeecCCEEEEEeccCC
Q 010531 155 VETDKATVEMECMEEGYLAK-----------------------------IVKGDGSKEIKVGEVIAITVEEEE 198 (508)
Q Consensus 155 VetdKa~~ei~ap~~G~v~~-----------------------------i~~~eG~~~v~vG~~la~i~~~~~ 198 (508)
+-..+...+|.|+.+|+|.. ++++.|+ .|..|++|+++....+
T Consensus 366 l~~a~~~~~v~a~~~G~v~~id~~~~g~~~~~lG~gr~~~~id~~~Gi~l~~k~G~-~V~~g~~l~~i~~~~~ 437 (474)
T 1uou_A 366 LPRAREQEELLAPADGTVELVRALPLALVLHELGAGRAGEPLRLGVGAELLVDVGQ-RLRRGTPWLRVHRDGP 437 (474)
T ss_dssp SCCCSEEEEEECSSCEEEEEECHHHHHHHHHHHHC------CCSSCEEEECSCTTC-EECTTCEEEEEEESSS
T ss_pred CCCCCeeEEEECCCCeEEEEecHHHHHHHHHHhCCCCcCCccCCCCceEEEccCCC-EECCCCeEEEEEcCCh
Confidence 45678888999999999954 4778897 9999999999875443
No 132
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis}
Probab=40.93 E-value=21 Score=32.81 Aligned_cols=43 Identities=23% Similarity=0.298 Sum_probs=33.7
Q ss_pred eCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEeccCCcc
Q 010531 146 VSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEEEEDI 200 (508)
Q Consensus 146 V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~~~~~ 200 (508)
+++|+.|+.++. +|+..-+.+.+|+ .|..|+.||.+.....++
T Consensus 96 lkkGt~L~lvpa-----------eG~~V~~i~~~G~-rV~kgd~lA~i~T~KGEV 138 (169)
T 3d4r_A 96 LKAGTKLISVPA-----------EGYKVYPIMDFGF-RVLKGYRLATLESKKGDL 138 (169)
T ss_dssp ECTTCBCEEEEE-----------CSSEEEECCCCSE-EECTTCEEEEEECTTCCE
T ss_pred EcCCCEEEEEEe-----------CceEEEEEcCcCc-EeccCCeEEEEEecCceE
Confidence 677778888874 5666677899997 999999999987655554
No 133
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP}
Probab=40.84 E-value=19 Score=36.18 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=29.7
Q ss_pred ceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 159 KATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 159 Ka~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
....-|.||.+|.+.- .++.|+ .|+.||+|+++.+.
T Consensus 255 ~~~~~v~A~~~Gl~~~-~v~~Gd-~V~~G~~la~I~dp 290 (331)
T 3na6_A 255 DGDCYLFSEHDGLFEI-MIDLGE-PVQEGDLVARVWSP 290 (331)
T ss_dssp CSCCCEECSSCEEEEE-SSCTTC-EECTTCEEEEEECS
T ss_pred CCcEEEeCCCCeEEEE-cCCCCC-EEcCCCEEEEEEcC
Confidence 3445589999998864 689997 99999999999764
No 134
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A
Probab=40.14 E-value=13 Score=37.10 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=18.8
Q ss_pred EEEEccCCCeeCCCCeEEEEE
Q 010531 136 ARWLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 136 ~~W~v~~Gd~V~~gd~L~eVe 156 (508)
++|++++|+.|..||+|++|+
T Consensus 73 v~~~~~dG~~v~~g~~l~~v~ 93 (299)
T 2jbm_A 73 VSWFLPEGSKLVPVARVAEVR 93 (299)
T ss_dssp EEESSCTTCEECSSEEEEEEE
T ss_pred EEEEcCCCCCCCCCCEEEEEE
Confidence 478999999999999999888
No 135
>1ax3_A Iiaglc, glucose permease IIA domain; phosphotransferase system, sugar transport, transferase, phosphorylation, transmembrane; NMR {Bacillus subtilis} SCOP: b.84.3.1 PDB: 1gpr_A
Probab=39.44 E-value=11 Score=34.49 Aligned_cols=39 Identities=33% Similarity=0.450 Sum_probs=28.8
Q ss_pred EEecCCCCCCC--CeEEEEEEEccCCCeeCCCCeEEEEEecc
Q 010531 120 EIGMPSLSPTM--QEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (508)
Q Consensus 120 ~i~mP~lg~~~--~eg~I~~W~v~~Gd~V~~gd~L~eVetdK 159 (508)
++.+ .+|.+. -.|+=.+.+|++||+|+.||+|+++.-++
T Consensus 79 evLi-HIGidTV~l~G~gF~~~V~~Gd~V~~G~~L~~~d~~~ 119 (162)
T 1ax3_A 79 EILI-HFGIDTVSLKGEGFTSFVSEGDRVEPGQKLLEVDLDA 119 (162)
T ss_dssp EEEE-ECSSSTTTTTTTTEEESCCCCSEECSEEEEEEECHHH
T ss_pred EEEE-EECccchhcCCCccEEEEeCCCEEcCCCEEEEECHHH
Confidence 5555 445332 35666788999999999999999998654
No 136
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1
Probab=38.25 E-value=18 Score=37.98 Aligned_cols=30 Identities=27% Similarity=0.382 Sum_probs=25.1
Q ss_pred CCeEEEEEEEccCCCeeCCCCeEEEEEecc
Q 010531 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (508)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~gd~L~eVetdK 159 (508)
+.-+.=+.++++.||.|++||+|++|=+++
T Consensus 372 ~d~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 401 (433)
T 1brw_A 372 IDLAVGIVLHKKIGDRVQKGEALATIHSNR 401 (433)
T ss_dssp CCTTCEEEESCCTTCEECTTCEEEEEEESS
T ss_pred CCcCcCeeEeccCCCEECCCCeEEEEEcCC
Confidence 444555789999999999999999998764
No 137
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus}
Probab=38.02 E-value=18 Score=37.89 Aligned_cols=30 Identities=37% Similarity=0.475 Sum_probs=24.9
Q ss_pred CCeEEEEEEEccCCCeeCCCCeEEEEEecc
Q 010531 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (508)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~gd~L~eVetdK 159 (508)
+.-+.=+.++++.||.|++||+|++|=++.
T Consensus 364 id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 393 (423)
T 2dsj_A 364 IDHGVGVYLLKKPGDRVERGEALALVYHRR 393 (423)
T ss_dssp CCTTCEEEESCCTTCEECTTSEEEEEEECS
T ss_pred CCcCcCeeeeccCCCEeCCCCeEEEEEeCC
Confidence 444555789999999999999999998764
No 138
>3h5q_A PYNP, pyrimidine-nucleoside phosphorylase; structural genomics, glycosyltransferase, transferase; HET: MSE THM; 1.94A {Staphylococcus aureus}
Probab=37.72 E-value=16 Score=38.56 Aligned_cols=31 Identities=29% Similarity=0.332 Sum_probs=25.3
Q ss_pred CCCeEEEEEEEccCCCeeCCCCeEEEEEecc
Q 010531 129 TMQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (508)
Q Consensus 129 ~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdK 159 (508)
.+.-+-=+.++++.||.|++||+|++|=.++
T Consensus 374 ~id~~~Gi~l~~~~G~~V~~g~~l~~i~~~~ 404 (436)
T 3h5q_A 374 DIDLAVGIVLNKKIGDKVEEGESLLTIHSNR 404 (436)
T ss_dssp CCCTTCEEEESCCTTCEECTTSEEEEEEESS
T ss_pred CCCCCCceEEecCCcCEeCCCCeEEEEeCCh
Confidence 3455666799999999999999999887443
No 139
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A
Probab=36.00 E-value=21 Score=37.89 Aligned_cols=27 Identities=26% Similarity=0.297 Sum_probs=23.3
Q ss_pred EEEEEEEccCCCeeCCCCeEEEEEecc
Q 010531 133 GNIARWLKKEGDKVSPGEVLCEVETDK 159 (508)
Q Consensus 133 g~I~~W~v~~Gd~V~~gd~L~eVetdK 159 (508)
+.=+.++++.||.|++||+|++|=+++
T Consensus 410 ~~Gi~l~~k~G~~V~~g~~l~~i~~~~ 436 (474)
T 1uou_A 410 GVGAELLVDVGQRLRRGTPWLRVHRDG 436 (474)
T ss_dssp SCEEEECSCTTCEECTTCEEEEEEESS
T ss_pred CCceEEEccCCCEECCCCeEEEEEcCC
Confidence 445789999999999999999997654
No 140
>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}
Probab=33.73 E-value=50 Score=33.69 Aligned_cols=14 Identities=36% Similarity=0.427 Sum_probs=12.5
Q ss_pred ccCCCeeCCCCeEE
Q 010531 140 KKEGDKVSPGEVLC 153 (508)
Q Consensus 140 v~~Gd~V~~gd~L~ 153 (508)
+++|+.|+.||+|+
T Consensus 125 v~~g~~v~~G~vla 138 (352)
T 2xhc_A 125 LRVGTKVKQGLPLS 138 (352)
T ss_dssp CCTTCEECTTCBSB
T ss_pred cCCCCEEccCcEEe
Confidence 68899999999887
No 141
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=32.14 E-value=17 Score=33.53 Aligned_cols=19 Identities=21% Similarity=0.144 Sum_probs=10.7
Q ss_pred EEccCCCeeCCCCeEEEEE
Q 010531 138 WLKKEGDKVSPGEVLCEVE 156 (508)
Q Consensus 138 W~v~~Gd~V~~gd~L~eVe 156 (508)
+.|++||.|++||+|..+-
T Consensus 85 i~V~~G~~V~~Gq~IG~vG 103 (182)
T 3it5_A 85 IQVSNGQQVSADTKLGVYA 103 (182)
T ss_dssp CCCCTTCEECTTCEEEEEC
T ss_pred cccCCCCEEcCCCEEEeec
Confidence 3455555565555555554
No 142
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2}
Probab=31.07 E-value=39 Score=34.09 Aligned_cols=39 Identities=15% Similarity=0.107 Sum_probs=30.4
Q ss_pred EecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 156 ETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 156 etdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
+..+...-+.||..|.+. ..++.|+ .|+.|++|+.+.+.
T Consensus 262 ~~~~~~~~v~A~~~G~~~-~~~~~g~-~V~~G~~La~i~d~ 300 (354)
T 3cdx_A 262 MVREADAYVMAPRTGLFE-PTHYVGE-EVRTGETAGWIHFV 300 (354)
T ss_dssp ECCCGGGEEECSSCEEEE-ESCCTTC-EECTTSEEEEEECT
T ss_pred eecCCcEEEECCCCEEEE-EeCCCCC-EeCCCCEEEEEECC
Confidence 333455668999999765 5678997 99999999998763
No 143
>3it5_A Protease LASA; metallopeptidase, beta-protein, cell membrane, cell out membrane, hydrolase, membrane, metal-binding; 2.00A {Pseudomonas aeruginosa} PDB: 3it7_A*
Probab=29.70 E-value=50 Score=30.34 Aligned_cols=63 Identities=6% Similarity=0.035 Sum_probs=39.2
Q ss_pred ceEEecCC--CC------CCCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCE
Q 010531 118 HQEIGMPS--LS------PTMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEV 189 (508)
Q Consensus 118 ~~~i~mP~--lg------~~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~ 189 (508)
-++|..|. .+ -.+.+|+|+.-- | -...|+.+.-..-+-+-. .++.+++|+ .|+.||+
T Consensus 34 GiDi~~~~G~~g~~gtpV~A~~~G~V~~~~---------G-~~V~I~H~~g~~t~Y~HL----~~i~V~~G~-~V~~Gq~ 98 (182)
T 3it5_A 34 SFDASYDWPRWGSATYSVVAAHAGTVRVLS---------R-CQVRVTHPSGWATNYYHM----DQIQVSNGQ-QVSADTK 98 (182)
T ss_dssp EEEEESSCCCTTSCCCEEECSSSEEEEEEE---------T-TEEEEECTTSEEEEEESE----ESCCCCTTC-EECTTCE
T ss_pred cEEecCCCCCCCCCCCEEEeccCEEEEEEC---------C-eEEEEEECCcEEEEEEcC----CccccCCCC-EEcCCCE
Confidence 36777772 11 124678887743 2 345566554333333332 356789997 9999999
Q ss_pred EEEEec
Q 010531 190 IAITVE 195 (508)
Q Consensus 190 la~i~~ 195 (508)
|+.+..
T Consensus 99 IG~vG~ 104 (182)
T 3it5_A 99 LGVYAG 104 (182)
T ss_dssp EEEECS
T ss_pred EEeecC
Confidence 999864
No 144
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=28.60 E-value=55 Score=35.80 Aligned_cols=52 Identities=23% Similarity=0.385 Sum_probs=39.9
Q ss_pred ccCCCeeCCCCeEEEEEecc-eeeEE--ecCCCeEEEEEEecCCCeeeecCCEEEEEec
Q 010531 140 KKEGDKVSPGEVLCEVETDK-ATVEM--ECMEEGYLAKIVKGDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 140 v~~Gd~V~~gd~L~eVetdK-a~~ei--~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~ 195 (508)
+++||.|..||++.+|.-.. ....| +....|+|..| .+| ...+-++++.+.+
T Consensus 131 ~~~Gd~v~~g~i~g~v~e~~~i~h~im~pp~~~g~v~~i--~~g--~~~v~~~v~~i~~ 185 (600)
T 3vr4_A 131 IEEGTEVSAGDIIGYVDETKIIQHKIMVPNGIKGTVQKI--ESG--SFTIDDPICVIET 185 (600)
T ss_dssp SCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE--CCE--EECTTSCCEEEEE
T ss_pred cccCCEecCCceEEEEecCCceeeeeecCCCCCceEEEe--cCC--cceeceeEEEEec
Confidence 79999999999999987433 33344 44478999987 777 3889999998753
No 145
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*
Probab=27.11 E-value=24 Score=35.05 Aligned_cols=21 Identities=33% Similarity=0.686 Sum_probs=18.4
Q ss_pred EEEEccCCCeeCCC------CeEEEEE
Q 010531 136 ARWLKKEGDKVSPG------EVLCEVE 156 (508)
Q Consensus 136 ~~W~v~~Gd~V~~g------d~L~eVe 156 (508)
++|++++|+.|..| |+|++|+
T Consensus 69 v~~~~~eG~~v~~g~~~~~~~~l~~v~ 95 (294)
T 3c2e_A 69 VEWLFKEGSFLEPSKNDSGKIVVAKIT 95 (294)
T ss_dssp EEESSCTTCEECGGGSSSSCEEEEEEE
T ss_pred EEEEeCCCCEeCCCCCCCCCcEEEEEE
Confidence 47999999999999 8888887
No 146
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A
Probab=25.88 E-value=47 Score=29.25 Aligned_cols=31 Identities=26% Similarity=0.226 Sum_probs=24.5
Q ss_pred EecCCCeEEEEEEe-cCCCeeeecCCEEEEEec
Q 010531 164 MECMEEGYLAKIVK-GDGSKEIKVGEVIAITVE 195 (508)
Q Consensus 164 i~ap~~G~v~~i~~-~eG~~~v~vG~~la~i~~ 195 (508)
+.+|.-|.|..+.. ++|+ .|..|++|+++..
T Consensus 39 ~a~~~lG~i~~V~lp~vGd-~V~~Gd~l~~VEs 70 (136)
T 1zko_A 39 HAQEQLGDVVYVDLPEVGR-EVKKGEVVASIES 70 (136)
T ss_dssp HHHHHHCSEEEEECCCTTC-EECTTCEEEEEEE
T ss_pred hhcccCCCcEEEEecCCCC-EEeCCCEEEEEEE
Confidence 34677777777766 9997 8999999998843
No 147
>2tpt_A Thymidine phosphorylase; transferase, salvage pathway; 2.60A {Escherichia coli} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 1azy_A 1tpt_A 1otp_A
Probab=25.79 E-value=24 Score=37.16 Aligned_cols=30 Identities=13% Similarity=0.107 Sum_probs=25.1
Q ss_pred CCeEEEEEEEccCCCeeCCCCeEEEEEecc
Q 010531 130 MQEGNIARWLKKEGDKVSPGEVLCEVETDK 159 (508)
Q Consensus 130 ~~eg~I~~W~v~~Gd~V~~gd~L~eVetdK 159 (508)
+.-+.=+.++++.||.|++||+|++|=+++
T Consensus 377 id~~~Gi~~~~k~g~~v~~g~~l~~i~~~~ 406 (440)
T 2tpt_A 377 IDYSVGFTDMARLGDQVDGQRPLAVIHAKD 406 (440)
T ss_dssp CCSSCEEESCCCTTCEEBTTBCSEEEEESS
T ss_pred CCcCcCeeEeccCCCEECCCCeEEEEecCC
Confidence 444555789999999999999999998764
No 148
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=24.88 E-value=30 Score=33.53 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=20.3
Q ss_pred EEEEEEEccCCCeeCCCCeEEEEEec
Q 010531 133 GNIARWLKKEGDKVSPGEVLCEVETD 158 (508)
Q Consensus 133 g~I~~W~v~~Gd~V~~gd~L~eVetd 158 (508)
+-+.++.|++||.|++||+|+.+-..
T Consensus 130 ~HL~~i~Vk~Gd~V~~Gq~IG~vG~t 155 (245)
T 3tuf_B 130 QSLSEVSVEQGDKVKQNQVIGKSGKN 155 (245)
T ss_dssp EEESEESCCTTCEECTTCEEEECBCC
T ss_pred ecCCccccCCCCEECCCCEEEEeCCc
Confidence 34456778999999999999988753
No 149
>4etm_A LMPTP, low molecular weight protein-tyrosine-phosphatase; dephosphorylation, hydrolase; 1.60A {Bacillus subtilis}
Probab=24.52 E-value=39 Score=30.69 Aligned_cols=32 Identities=9% Similarity=0.336 Sum_probs=25.3
Q ss_pred cChhHHHHHHHcCCCCCcccccCCCCccchhhHHHH
Q 010531 257 ASPVARNLAEEHNVSLSSIKGTGPNGLIVKADIEDY 292 (508)
Q Consensus 257 aSP~aRrLA~e~gIDLs~V~GTGp~GRItk~DV~~~ 292 (508)
+.|.+++.++++|||++.-.. -.|+.+|++.|
T Consensus 68 ~d~~a~~~l~~~Gid~s~h~a----r~l~~~d~~~~ 99 (173)
T 4etm_A 68 PHEGTQEILRREGISFDGMLA----RQVSEQDLDDF 99 (173)
T ss_dssp CCHHHHHHHHHTTCCCTTCCC----CBCCHHHHHHC
T ss_pred CCHHHHHHHHHCCccccCCcc----ccCCHhhcCCC
Confidence 579999999999999975432 25888888765
No 150
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=24.24 E-value=32 Score=33.94 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=16.7
Q ss_pred EEecCCCeeeecCCEEEEEeccC
Q 010531 175 IVKGDGSKEIKVGEVIAITVEEE 197 (508)
Q Consensus 175 i~~~eG~~~v~vG~~la~i~~~~ 197 (508)
+.+++|+ .|+.||+|+.+...+
T Consensus 232 i~V~~G~-~V~~Gq~IG~vG~tG 253 (282)
T 2hsi_A 232 IDVKLGQ-QVPRGGVLGKVGATG 253 (282)
T ss_dssp ECSCTTC-EECTTCEEEECCCTT
T ss_pred cccCCcC-EECCCCEEEEECCCC
Confidence 4578886 888888888876543
No 151
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=23.60 E-value=96 Score=33.79 Aligned_cols=53 Identities=30% Similarity=0.367 Sum_probs=39.6
Q ss_pred EccCCCeeCCCCeEEEEEec-ceeeEE--ecCCCeEEEEEEecCCCeeeecCCEEEEEe
Q 010531 139 LKKEGDKVSPGEVLCEVETD-KATVEM--ECMEEGYLAKIVKGDGSKEIKVGEVIAITV 194 (508)
Q Consensus 139 ~v~~Gd~V~~gd~L~eVetd-Ka~~ei--~ap~~G~v~~i~~~eG~~~v~vG~~la~i~ 194 (508)
.+++||.|..||++.+|.-. -....| +....|+|..| +.+|+ ..+-++++.+.
T Consensus 123 ~~~~gd~v~~G~i~g~v~e~~~~~~~imvpp~~~g~v~~i-~~~g~--~~v~~~i~~i~ 178 (588)
T 3mfy_A 123 KAKVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEI-AEEGD--YTIEEVIAKVK 178 (588)
T ss_dssp CCCTTCEECTTCEEEEEECSSSCEEEEECCTTCCEEEEEE-CCSEE--ECTTSEEEEEE
T ss_pred ccccCcccccCceEEEEecccceeeeeecCCCCCceEEEe-ccCCc--ccccceEEEEe
Confidence 47899999999999988633 233333 45578999875 46773 88999999774
No 152
>1qwy_A Peptidoglycan hydrolase; LYTM lysostaphin metalloprotease asparagine switch; 1.30A {Staphylococcus aureus subsp} SCOP: b.84.3.2 PDB: 2b0p_A 2b13_A* 2b44_A
Probab=23.42 E-value=34 Score=34.04 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=17.2
Q ss_pred EEecCCCeeeecCCEEEEEeccC
Q 010531 175 IVKGDGSKEIKVGEVIAITVEEE 197 (508)
Q Consensus 175 i~~~eG~~~v~vG~~la~i~~~~ 197 (508)
+.+++|+ .|+.||+|+.+...+
T Consensus 239 i~Vk~Gq-~V~~GqvIG~vG~TG 260 (291)
T 1qwy_A 239 LTVSAGD-KVKAGDQIAYSGSTG 260 (291)
T ss_dssp ECCCTTC-EECTTCEEEECCCCS
T ss_pred cccCCcC-EECCCCEEEEECCCC
Confidence 4678997 899999999876543
No 153
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A*
Probab=23.10 E-value=56 Score=28.50 Aligned_cols=29 Identities=10% Similarity=0.036 Sum_probs=24.0
Q ss_pred ecCCCeEEEEEEe-cCCCeeeecCCEEEEEe
Q 010531 165 ECMEEGYLAKIVK-GDGSKEIKVGEVIAITV 194 (508)
Q Consensus 165 ~ap~~G~v~~i~~-~eG~~~v~vG~~la~i~ 194 (508)
-.+.-|.|..+.. ++|+ .|..|++|+.+.
T Consensus 31 a~~~lG~i~~v~lp~~G~-~V~~g~~l~~vE 60 (131)
T 1hpc_A 31 AQDHLGEVVFVELPEPGV-SVTKGKGFGAVE 60 (131)
T ss_dssp HHHHHCSEEEEECCCTTC-EECBTSEEEEEE
T ss_pred hcccCCCceEEEecCCCC-EEeCCCEEEEEE
Confidence 3577787888877 8997 899999999884
No 154
>3tuf_B Stage II sporulation protein Q; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_B
Probab=21.71 E-value=65 Score=31.10 Aligned_cols=67 Identities=16% Similarity=0.215 Sum_probs=41.3
Q ss_pred eEEecCCCCC-----CCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEEEecCCCeeeecCCEEEEE
Q 010531 119 QEIGMPSLSP-----TMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIVKGDGSKEIKVGEVIAIT 193 (508)
Q Consensus 119 ~~i~mP~lg~-----~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i 193 (508)
+.|..|. |. .+..|+|+.+--..| -| -.+.|+-..-..-+-+. |.++.++.|+ .|..|++|+++
T Consensus 84 IDi~a~~-Gt~~pV~A~~~G~V~~~g~~~~----~G-~~ViI~Hg~G~~t~Y~H----L~~i~Vk~Gd-~V~~Gq~IG~v 152 (245)
T 3tuf_B 84 IDLAEKD-GKDFDVSASLSGTVVKAEKDPV----LG-YVVEVEHADGLSTVYQS----LSEVSVEQGD-KVKQNQVIGKS 152 (245)
T ss_dssp EEEEETT-CCCCEEECSSCEEEEEEEEETT----TE-EEEEEECSTTEEEEEEE----ESEESCCTTC-EECTTCEEEEC
T ss_pred EEEeCCC-CCcceEEeCcCeEEEEEEecCC----Cc-eEEEEEeCCCEEEEEec----CCccccCCCC-EECCCCEEEEe
Confidence 5666653 33 356788877654322 12 34455554433333333 3467799997 99999999998
Q ss_pred ecc
Q 010531 194 VEE 196 (508)
Q Consensus 194 ~~~ 196 (508)
...
T Consensus 153 G~t 155 (245)
T 3tuf_B 153 GKN 155 (245)
T ss_dssp BCC
T ss_pred CCc
Confidence 655
No 155
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti}
Probab=21.40 E-value=71 Score=31.72 Aligned_cols=34 Identities=12% Similarity=0.166 Sum_probs=28.2
Q ss_pred eeEEecCCCeEEEEEEecCCCeeeecCCEEEEEecc
Q 010531 161 TVEMECMEEGYLAKIVKGDGSKEIKVGEVIAITVEE 196 (508)
Q Consensus 161 ~~ei~ap~~G~v~~i~~~eG~~~v~vG~~la~i~~~ 196 (508)
..-+.||..|.+. -.++.|+ .|+.|++|+.+.+.
T Consensus 257 ~~~~~a~~~G~~~-~~~~~g~-~V~~G~~la~i~dp 290 (332)
T 2qj8_A 257 SDQLKSPSPGIFE-PRCSVMD-EVEQGDVVGVLHPM 290 (332)
T ss_dssp GGEEECSSSEEEE-ECSCTTC-EECTTCEEEEEECT
T ss_pred ceEEeCCCCeEEE-EeCCCCC-EeCCCCEEEEEECC
Confidence 3457899999887 6678897 99999999998753
No 156
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=21.38 E-value=91 Score=30.11 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=38.1
Q ss_pred ceEEecCCCCC-------CCCeEEEEEEEccCCCeeCCCCeEEEEEecceeeEEecCCCeEEEEE-EecCCCeeeecCCE
Q 010531 118 HQEIGMPSLSP-------TMQEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKI-VKGDGSKEIKVGEV 189 (508)
Q Consensus 118 ~~~i~mP~lg~-------~~~eg~I~~W~v~~Gd~V~~gd~L~eVetdKa~~ei~ap~~G~v~~i-~~~eG~~~v~vG~~ 189 (508)
-++|..|. |. .+.+|+|+.---..| +--.+.|+.+.-..-+-+- +.++ .+++|+ .|+.||+
T Consensus 127 GiDi~a~~-Gt~~~~pV~A~~~G~V~~~g~~~~-----~G~~V~I~H~~G~~t~Y~H----L~~~~~V~~G~-~V~~Gq~ 195 (252)
T 3nyy_A 127 GTDIMAEK-NTPGYYPVVSMTDGVVTEKGWLEK-----GGWRIGITAPTGAYFYYAH----LDSYAELEKGD-PVKAGDL 195 (252)
T ss_dssp CEEEEESS-CCTTCSEEECSSCEEEEEEEEETT-----TEEEEEEECTTSCEEEEEE----ESEECSCCTTC-EECTTCE
T ss_pred cEEEecCC-CCCCCceEEeccCEEEEEEEecCC-----CCCEEEEEeCCcEEEEEee----CCCCCcCCCCC-EECCCCE
Confidence 35666653 32 356787765322211 2233455544333333332 3344 689997 9999999
Q ss_pred EEEEecc
Q 010531 190 IAITVEE 196 (508)
Q Consensus 190 la~i~~~ 196 (508)
|+.+...
T Consensus 196 IG~vG~t 202 (252)
T 3nyy_A 196 LGYMGDS 202 (252)
T ss_dssp EEECBCC
T ss_pred EEEECCC
Confidence 9997543
No 157
>2hsi_A Putative peptidase M23; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.90A {Pseudomonas aeruginosa PAO1}
Probab=20.67 E-value=72 Score=31.38 Aligned_cols=14 Identities=14% Similarity=0.209 Sum_probs=10.9
Q ss_pred eEEecCCCeEEEEE
Q 010531 162 VEMECMEEGYLAKI 175 (508)
Q Consensus 162 ~ei~ap~~G~v~~i 175 (508)
.+|.|+.+|+|...
T Consensus 191 tpV~A~~~G~V~~~ 204 (282)
T 2hsi_A 191 TPIKAPAAGKVILI 204 (282)
T ss_dssp CEEECSSCEEEEEE
T ss_pred CeEEeccCeEEEEE
Confidence 46888888888765
No 158
>3nyy_A Putative glycyl-glycine endopeptidase LYTM; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE 2PE SO4; 1.60A {Ruminococcus gnavus}
Probab=20.32 E-value=42 Score=32.56 Aligned_cols=25 Identities=20% Similarity=0.419 Sum_probs=20.7
Q ss_pred EEEEEE-EccCCCeeCCCCeEEEEEe
Q 010531 133 GNIARW-LKKEGDKVSPGEVLCEVET 157 (508)
Q Consensus 133 g~I~~W-~v~~Gd~V~~gd~L~eVet 157 (508)
+-+.+. .|++||.|++||+|+.+-.
T Consensus 176 ~HL~~~~~V~~G~~V~~Gq~IG~vG~ 201 (252)
T 3nyy_A 176 AHLDSYAELEKGDPVKAGDLLGYMGD 201 (252)
T ss_dssp EEESEECSCCTTCEECTTCEEEECBC
T ss_pred eeCCCCCcCCCCCEECCCCEEEEECC
Confidence 345556 7999999999999998864
Done!